Query 004048
Match_columns 776
No_of_seqs 282 out of 879
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 16:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3706 Uncharacterized conser 100.0 4.7E-46 1E-50 403.5 14.0 264 272-634 181-450 (629)
2 COG2850 Uncharacterized conser 100.0 4.4E-43 9.5E-48 373.9 15.0 211 292-591 13-233 (383)
3 PF08007 Cupin_4: Cupin superf 100.0 2.2E-38 4.7E-43 336.4 19.7 208 296-579 1-217 (319)
4 PF13621 Cupin_8: Cupin-like d 99.7 2.2E-17 4.7E-22 164.5 13.8 98 452-550 123-232 (251)
5 KOG2132 Uncharacterized conser 99.0 1.1E-10 2.5E-15 124.9 2.0 117 435-552 218-351 (355)
6 KOG2131 Uncharacterized conser 98.1 3.8E-06 8.1E-11 91.9 5.1 94 463-570 201-299 (427)
7 KOG2130 Phosphatidylserine-spe 98.0 4.3E-06 9.3E-11 90.1 5.1 88 464-552 183-288 (407)
8 KOG2508 Predicted phospholipas 97.8 4.3E-05 9.3E-10 83.7 6.7 97 453-550 155-293 (437)
9 PF02373 JmjC: JmjC domain, hy 97.4 0.00022 4.9E-09 64.1 4.8 88 463-552 1-106 (114)
10 TIGR03037 anthran_nbaC 3-hydro 96.0 0.024 5.3E-07 56.7 7.7 57 472-552 39-95 (159)
11 PRK13264 3-hydroxyanthranilate 95.8 0.029 6.3E-07 57.0 7.8 56 473-552 46-101 (177)
12 PF07883 Cupin_2: Cupin domain 95.8 0.015 3.3E-07 48.0 4.7 53 472-552 9-62 (71)
13 COG0662 {ManC} Mannose-6-phosp 95.7 0.047 1E-06 51.7 8.2 60 464-552 41-100 (127)
14 COG1917 Uncharacterized conser 95.6 0.055 1.2E-06 50.8 8.5 70 462-567 46-116 (131)
15 COG4101 Predicted mannose-6-ph 94.8 0.064 1.4E-06 51.8 5.9 61 467-552 53-113 (142)
16 PF00190 Cupin_1: Cupin; Inte 94.6 0.14 3E-06 49.1 7.8 71 461-551 35-108 (144)
17 PF02311 AraC_binding: AraC-li 94.1 0.18 3.9E-06 45.1 7.1 54 471-552 13-66 (136)
18 TIGR03404 bicupin_oxalic bicup 92.5 0.53 1.2E-05 52.6 9.1 65 463-552 249-314 (367)
19 TIGR03404 bicupin_oxalic bicup 92.0 0.67 1.5E-05 51.9 9.2 67 461-552 69-135 (367)
20 KOG1633 F-box protein JEMMA an 90.3 0.41 9E-06 58.2 5.8 81 473-554 138-223 (776)
21 PF06052 3-HAO: 3-hydroxyanthr 90.2 0.99 2.1E-05 45.1 7.3 56 473-552 45-100 (151)
22 COG2140 Thermophilic glucose-6 90.1 1.1 2.5E-05 46.8 8.1 68 461-553 82-152 (209)
23 PRK04190 glucose-6-phosphate i 89.7 1.6 3.4E-05 45.1 8.6 26 527-552 120-145 (191)
24 PRK13290 ectC L-ectoine syntha 88.6 1.7 3.6E-05 41.8 7.4 54 472-552 46-100 (125)
25 KOG2132 Uncharacterized conser 88.4 0.3 6.6E-06 54.0 2.5 125 421-553 140-279 (355)
26 smart00835 Cupin_1 Cupin. This 88.2 2.8 6E-05 40.4 8.7 59 472-552 41-100 (146)
27 PF06560 GPI: Glucose-6-phosph 88.0 0.45 9.9E-06 48.7 3.4 28 526-553 109-136 (182)
28 PRK15457 ethanolamine utilizat 87.6 1.2 2.6E-05 47.3 6.2 49 472-549 167-215 (233)
29 TIGR03214 ura-cupin putative a 87.2 1.7 3.7E-05 46.3 7.2 27 527-553 218-244 (260)
30 PRK13500 transcriptional activ 86.5 2.1 4.6E-05 46.0 7.6 71 453-552 41-111 (312)
31 PRK10296 DNA-binding transcrip 85.3 4.4 9.6E-05 42.3 9.1 62 461-550 23-84 (278)
32 PRK09943 DNA-binding transcrip 83.8 4.2 9.2E-05 40.6 7.8 48 477-552 124-171 (185)
33 PRK13502 transcriptional activ 82.5 4.2 9.1E-05 42.5 7.5 52 472-551 29-80 (282)
34 PRK13501 transcriptional activ 82.3 3.8 8.2E-05 43.2 7.1 51 473-551 30-80 (290)
35 PF10508 Proteasom_PSMB: Prote 82.2 3.6 7.9E-05 47.7 7.5 113 41-162 59-171 (503)
36 TIGR03214 ura-cupin putative a 80.7 8.6 0.00019 41.1 9.1 26 527-552 98-123 (260)
37 smart00558 JmjC A domain famil 80.5 1.8 3.8E-05 35.4 3.1 29 461-490 27-57 (57)
38 PLN00212 glutelin; Provisional 79.9 11 0.00024 44.3 10.2 80 472-552 91-173 (493)
39 PF05523 FdtA: WxcM-like, C-te 78.6 6.5 0.00014 38.0 6.8 71 467-569 40-112 (131)
40 TIGR01479 GMP_PMI mannose-1-ph 78.2 7.2 0.00016 44.9 8.1 26 527-552 415-440 (468)
41 PRK11171 hypothetical protein; 76.1 17 0.00038 38.9 9.8 26 527-552 101-126 (266)
42 PRK10371 DNA-binding transcrip 75.2 6.9 0.00015 42.2 6.6 64 460-552 26-89 (302)
43 PF01050 MannoseP_isomer: Mann 74.4 12 0.00026 37.3 7.5 26 527-552 102-127 (151)
44 PLN00212 glutelin; Provisional 74.0 11 0.00023 44.4 8.0 60 472-553 359-419 (493)
45 TIGR02297 HpaA 4-hydroxyphenyl 73.7 9.7 0.00021 39.7 7.1 52 473-552 35-87 (287)
46 PF02041 Auxin_BP: Auxin bindi 72.5 22 0.00049 36.0 8.8 86 461-573 43-130 (167)
47 PF06249 EutQ: Ethanolamine ut 72.0 3.2 7E-05 41.6 2.9 20 527-546 113-132 (152)
48 PRK13503 transcriptional activ 71.9 6.7 0.00014 40.6 5.3 63 461-551 14-77 (278)
49 PF00514 Arm: Armadillo/beta-c 71.9 4.5 9.7E-05 30.9 3.1 37 102-138 4-40 (41)
50 PRK15401 alpha-ketoglutarate-d 71.8 27 0.00058 36.9 9.7 85 443-551 96-194 (213)
51 PF05899 Cupin_3: Protein of u 70.7 3 6.6E-05 36.3 2.1 18 527-544 44-61 (74)
52 cd00020 ARM Armadillo/beta-cat 70.0 9.9 0.00022 33.3 5.3 87 70-158 11-98 (120)
53 TIGR00568 alkb DNA alkylation 69.5 23 0.00049 36.0 8.3 38 440-480 72-114 (169)
54 TIGR00218 manA mannose-6-phosp 69.0 2.5 5.4E-05 45.8 1.5 21 527-547 151-171 (302)
55 smart00185 ARM Armadillo/beta- 68.9 4.7 0.0001 29.6 2.6 37 102-138 4-40 (41)
56 PRK15460 cpsB mannose-1-phosph 68.3 18 0.00039 42.2 8.3 26 527-552 424-449 (478)
57 COG3837 Uncharacterized conser 67.9 22 0.00047 36.2 7.6 75 450-552 32-109 (161)
58 cd00020 ARM Armadillo/beta-cat 67.7 6 0.00013 34.7 3.4 71 66-138 49-119 (120)
59 PRK15131 mannose-6-phosphate i 66.4 3.8 8.3E-05 46.4 2.4 23 527-549 237-259 (389)
60 PF03079 ARD: ARD/ARD' family; 63.5 27 0.00059 35.2 7.4 25 527-551 115-139 (157)
61 PF12852 Cupin_6: Cupin 62.4 21 0.00047 35.3 6.5 24 529-552 57-80 (186)
62 PF13532 2OG-FeII_Oxy_2: 2OG-F 62.3 18 0.0004 35.7 6.0 89 439-552 72-176 (194)
63 COG1482 ManA Phosphomannose is 61.7 5.1 0.00011 44.4 2.1 23 527-549 158-180 (312)
64 PF00908 dTDP_sugar_isom: dTDP 61.4 12 0.00027 38.0 4.7 76 459-552 42-123 (176)
65 PRK05467 Fe(II)-dependent oxyg 61.0 1.1E+02 0.0023 32.7 11.7 27 527-553 141-167 (226)
66 COG3450 Predicted enzyme of th 59.0 29 0.00062 33.6 6.4 60 460-549 45-104 (116)
67 TIGR02272 gentisate_1_2 gentis 57.9 23 0.00051 39.7 6.5 52 474-552 94-145 (335)
68 PF12973 Cupin_7: ChrR Cupin-l 54.9 10 0.00022 33.8 2.5 24 530-553 61-84 (91)
69 COG4766 EutQ Ethanolamine util 53.2 23 0.0005 36.1 4.9 24 527-550 136-159 (176)
70 PLN02288 mannose-6-phosphate i 52.2 8.7 0.00019 43.8 2.1 23 527-549 251-273 (394)
71 PRK10572 DNA-binding transcrip 51.7 49 0.0011 34.8 7.4 25 527-551 67-91 (290)
72 TIGR01221 rmlC dTDP-4-dehydror 49.7 87 0.0019 32.1 8.5 76 459-552 43-123 (176)
73 COG1898 RfbC dTDP-4-dehydrorha 49.3 56 0.0012 33.6 7.1 77 459-553 44-124 (173)
74 KOG2107 Uncharacterized conser 46.7 18 0.00039 37.1 3.1 26 526-551 115-140 (179)
75 COG5064 SRP1 Karyopherin (impo 44.8 57 0.0012 37.3 6.8 112 65-201 326-439 (526)
76 COG4297 Uncharacterized protei 41.8 45 0.00098 33.6 4.9 43 481-549 65-107 (163)
77 PF10508 Proteasom_PSMB: Prote 41.8 62 0.0013 37.8 6.9 139 20-163 116-255 (503)
78 PRK09685 DNA-binding transcrip 41.4 72 0.0016 33.7 6.8 25 527-551 89-113 (302)
79 PF04970 LRAT: Lecithin retino 41.0 22 0.00047 33.5 2.6 30 530-565 6-36 (125)
80 PRK11171 hypothetical protein; 39.2 85 0.0019 33.7 7.0 26 527-552 223-248 (266)
81 TIGR03027 pepcterm_export puta 38.2 17 0.00037 36.0 1.4 17 527-543 148-164 (165)
82 KOG2422 Uncharacterized conser 38.1 18 0.00038 43.4 1.7 51 197-247 284-334 (665)
83 smart00702 P4Hc Prolyl 4-hydro 38.1 1.4E+02 0.003 29.4 7.8 27 527-553 139-168 (178)
84 KOG2508 Predicted phospholipas 37.8 34 0.00074 39.0 3.8 38 527-567 361-398 (437)
85 PF13513 HEAT_EZ: HEAT-like re 34.3 90 0.002 24.8 4.8 46 87-134 7-52 (55)
86 PF14525 AraC_binding_2: AraC- 33.3 1.5E+02 0.0033 27.8 7.0 27 527-553 73-99 (172)
87 PF11699 CENP-C_C: Mif2/CENP-C 32.8 35 0.00076 31.2 2.4 26 527-552 51-76 (85)
88 PLN03200 cellulose synthase-in 32.5 64 0.0014 44.1 5.6 91 68-160 448-539 (2102)
89 PF05804 KAP: Kinesin-associat 32.4 60 0.0013 39.9 5.0 63 99-161 320-382 (708)
90 COG3065 Slp Starvation-inducib 32.1 53 0.0012 34.2 3.8 46 481-547 134-179 (191)
91 PLN03200 cellulose synthase-in 30.8 55 0.0012 44.7 4.6 85 74-160 659-744 (2102)
92 COG3145 AlkB Alkylated DNA rep 29.5 2.1E+02 0.0046 30.1 7.7 87 439-549 82-182 (194)
93 TIGR02451 anti_sig_ChrR anti-s 29.1 1.9E+02 0.0042 30.2 7.5 23 530-552 164-186 (215)
94 TIGR02466 conserved hypothetic 29.0 3.7E+02 0.0081 28.1 9.4 25 527-551 162-186 (201)
95 COG1791 Uncharacterized conser 29.0 1.9E+02 0.0041 30.1 7.1 25 527-551 118-142 (181)
96 PF01238 PMI_typeI: Phosphoman 29.0 28 0.00062 39.2 1.5 23 527-549 250-272 (373)
97 PF13993 YccJ: YccJ-like prote 27.0 44 0.00095 29.4 1.9 26 258-292 14-40 (69)
98 TIGR01762 chlorin-enz chlorina 26.6 2.5E+02 0.0053 30.7 8.0 24 527-550 209-232 (288)
99 COG2164 Uncharacterized conser 26.4 27 0.00059 33.5 0.6 16 530-545 64-79 (126)
100 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 26.3 1.1E+02 0.0023 31.7 4.9 60 475-550 117-177 (195)
101 PF07710 P53_tetramer: P53 tet 25.6 19 0.0004 29.3 -0.5 19 479-497 6-24 (42)
102 COG3257 GlxB Uncharacterized p 24.7 3.3E+02 0.0071 29.6 8.1 25 527-551 101-125 (264)
103 KOG0166 Karyopherin (importin) 23.6 1.7E+02 0.0038 34.9 6.5 114 42-162 213-332 (514)
104 COG3822 ABC-type sugar transpo 23.5 67 0.0015 33.9 2.8 26 527-552 153-178 (225)
105 KOG0166 Karyopherin (importin) 23.4 4.4E+02 0.0095 31.7 9.6 139 65-232 320-486 (514)
106 PF01602 Adaptin_N: Adaptin N 22.8 6.9E+02 0.015 28.4 10.9 89 36-137 91-179 (526)
107 PF13646 HEAT_2: HEAT repeats; 22.6 2E+02 0.0043 24.3 5.2 82 26-131 2-83 (88)
108 PF13640 2OG-FeII_Oxy_3: 2OG-F 22.3 84 0.0018 27.8 2.9 21 530-550 65-86 (100)
109 PF13646 HEAT_2: HEAT repeats; 21.9 1.3E+02 0.0027 25.5 3.8 55 70-137 4-58 (88)
110 PF07385 DUF1498: Protein of u 21.7 87 0.0019 33.6 3.3 79 471-552 97-179 (225)
111 PF05536 Neurochondrin: Neuroc 21.5 5.7E+02 0.012 30.6 10.2 92 70-162 54-151 (543)
112 TIGR03028 EpsE polysaccharide 20.8 51 0.0011 34.6 1.4 15 530-544 225-239 (239)
113 PRK09687 putative lyase; Provi 20.4 3E+02 0.0065 29.9 7.1 102 20-134 51-152 (280)
114 TIGR02408 ectoine_ThpD ectoine 20.1 1E+02 0.0022 33.0 3.6 38 527-567 211-248 (277)
No 1
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.7e-46 Score=403.54 Aligned_cols=264 Identities=27% Similarity=0.353 Sum_probs=211.6
Q ss_pred ccCccccCchhhh--HHhhhccCC--CCHHHHHHhhhccCCeeeeccCCCccccccchhhhhcccccccchhhhhhhhhh
Q 004048 272 NADQLTTISKGRI--ERSIFSLNE--GCFENFIVNYWEVSPFLVRRSTDSLIEGNDIFTSFVQGLSSQESVCSFLSCIFQ 347 (776)
Q Consensus 272 ~~~~~~~~~~~~v--~~~lf~~~~--~s~e~Fl~~YWEKKPLLIRra~p~~~~~~~~fs~f~~~l~~~~~~~~l~~s~~~ 347 (776)
|+.-.+..+.++| .+++|+|++ +..++||++|||++|+||+|..|. +|.+++
T Consensus 181 Ea~~i~s~~adsv~~~srlfe~lisP~~t~tFfk~fwe~~allVqR~dpt------Yfgslf------------------ 236 (629)
T KOG3706|consen 181 EAAGIPSDDADSVDSPSRLFEWLISPIKTETFFKEFWEQKALLVQRDDPT------YFGSLF------------------ 236 (629)
T ss_pred HhccCCccccccccchHHHHHHhhcCCchHHHHHHHHhccceEEeccCcc------HHhhhh------------------
Confidence 3444444456666 899999997 566999999999999999999997 233333
Q ss_pred ccccCCCCCchhhhhhhchhhhhhhcCCCCccccceeEEEeCCCCcccccccCCCCCCccccCCccccccChhHHHHHhh
Q 004048 348 RHISCLPIASDELDILSFLNDMRHKLGCPLVYEQDIRVLKTDKISKKEVHFFPRISDSFDVKDPYLIYANDISKCEEAYK 427 (776)
Q Consensus 348 g~~s~~pi~~deLa~lalle~V~~~l~~p~~y~~d~Rlv~~~~~~~~E~h~~~~~~d~w~~r~Gp~~~f~d~~~l~~l~~ 427 (776)
|. +.|+++ .-++.+.||+++++.+|.|| ++|+-+.+|. +-+..+|.+|.
T Consensus 237 ---st-----------a~Ldel--l~r~hl~ygrnvnvarykNG-kRetLN~~GR--------------A~p~av~~f~q 285 (629)
T KOG3706|consen 237 ---ST-----------ADLDEL--LSRGHLYYGRNVNVARYKNG-KRETLNPDGR--------------ALPLAVWKFYQ 285 (629)
T ss_pred ---hH-----------hhHHHH--HhhcceeecccccceeeecC-cceecCCccc--------------cchHHHHHHHh
Confidence 22 224444 11245899999999999995 5687666632 12458999999
Q ss_pred CCceEEEcCcccCcHHHHHHHHHHHhhhCCCcccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCC--CCCC
Q 004048 428 EGYTIALRGMEFRFECLANIADGLASLFGQPSVGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPS--VQLP 505 (776)
Q Consensus 428 ~G~TLvL~~ld~~~p~LaeL~~aLe~~FG~P~v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~--~~lP 505 (776)
+||||.+.+++.|...+|.+|..|++.||+ .|++|+|+||+|+|||+||||+.++||+|++|+|+|+||.|+. ..+|
T Consensus 286 ~~cSiqllnPqty~drlwq~cevlqeqFgc-~vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~ 364 (629)
T KOG3706|consen 286 KGCSIQLLNPQTYKDRLWQICEVLQEQFGC-LVGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELA 364 (629)
T ss_pred cCceEEeeCchhHHHHHHHHHHHHHHHhcc-ccccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhh
Confidence 999999999999999999999999999998 8999999999999999999999999999999999999999753 2334
Q ss_pred CCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCCCccCCCccceeEEEeeccccCcchHHHHHHHHHH
Q 004048 506 RLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTLGVEVERPFEWEGFAHVALC 585 (776)
Q Consensus 506 r~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~deg~~~~~~~SLHLT~SI~~raP~~We~l~~~Al~ 585 (776)
+.. .-|+.++++|+ |+++++|+|||+||+|||++|+|.+.+. . ||||||+|.+.+
T Consensus 365 l~s----S~Nf~eedlge-PV~e~vle~GDllYfPRG~IHQA~t~~~-v-----HSlHvTlStyqq-------------- 419 (629)
T KOG3706|consen 365 LVS----SDNFTEEDLGE-PVHEFVLEPGDLLYFPRGTIHQADTPAL-V-----HSLHVTLSTYQQ-------------- 419 (629)
T ss_pred hcc----CCCCChhHhCC-chHHhhcCCCcEEEecCcceeeccccch-h-----ceeEEEeehhhh--------------
Confidence 322 23455666775 5689999999999999999999999864 3 899999998643
Q ss_pred HhhhhcccccccccccchhhhhHhHHHHHHHHHHHhcCCChhhhhhhcc
Q 004048 586 CWNQAQKTHHHASIESFSGILNLMSVNLLHLLIGLFGHSDPTFRKACLV 634 (776)
Q Consensus 586 ~~~~~~~~~~~~l~~~~~~~~~~l~~~Ll~~Airl~~~~dp~~Rkac~v 634 (776)
..|.. +.+.+++.|+..+++++.+||++.|.
T Consensus 420 ----~s~an--------------lle~~ip~av~~a~d~~velRrGLP~ 450 (629)
T KOG3706|consen 420 ----NSWAN--------------LLEDTIPGAVFDAADEDVELRRGLPR 450 (629)
T ss_pred ----hhHHH--------------HHHHHHHHHHHHHHhhhhHHhhCCCh
Confidence 22222 66778899999999999999999554
No 2
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-43 Score=373.88 Aligned_cols=211 Identities=23% Similarity=0.393 Sum_probs=180.1
Q ss_pred CCCCHHHHHHhhhccCCeeeeccCCCccccccchhhhhcccccccchhhhhhhhhhccccCCCCCchhhhhhhchhhhhh
Q 004048 292 NEGCFENFIVNYWEVSPFLVRRSTDSLIEGNDIFTSFVQGLSSQESVCSFLSCIFQRHISCLPIASDELDILSFLNDMRH 371 (776)
Q Consensus 292 ~~~s~e~Fl~~YWEKKPLLIRra~p~~~~~~~~fs~f~~~l~~~~~~~~l~~s~~~g~~s~~pi~~deLa~lalle~V~~ 371 (776)
.++|+++|+++||||||+|||++.|+ |+ .|+++|||++++++++|
T Consensus 13 ~glt~~~FL~~YWqkKPlliR~a~p~----------~~-----------------------~p~~pdeLa~La~~edV-- 57 (383)
T COG2850 13 LGLTPEDFLRDYWQKKPLLIRNAFPE----------FH-----------------------SPLSPDELAGLAQEEDV-- 57 (383)
T ss_pred CCCCHHHHHHHHhhhcchHHhhcccc----------cc-----------------------cCCCHHHHHHHhccccc--
Confidence 67999999999999999999999987 54 57899999999999999
Q ss_pred hcCCCCccccceeEEEeCCCCcccccccCCCCCCccccCCccccccChhHHHHHhhCCceEEEcCcccCcHHHHHHHHHH
Q 004048 372 KLGCPLVYEQDIRVLKTDKISKKEVHFFPRISDSFDVKDPYLIYANDISKCEEAYKEGYTIALRGMEFRFECLANIADGL 451 (776)
Q Consensus 372 ~l~~p~~y~~d~Rlv~~~~~~~~E~h~~~~~~d~w~~r~Gp~~~f~d~~~l~~l~~~G~TLvL~~ld~~~p~LaeL~~aL 451 (776)
++|+|....+ +.|.+++|||..+..++ .. .+|||.++++++|.|+++.+.+.
T Consensus 58 ----------~srLV~~~~~------------~~w~~~~gPfe~~d~~~----~p-~~wsllvq~vd~w~p~v~~l~~~- 109 (383)
T COG2850 58 ----------TSRLVSHESD------------GTWQVSHGPFEEEDFLG----LP-RNWSLLVQAVDHWHPEVAALMEP- 109 (383)
T ss_pred ----------cchhhhhccC------------CceeEeeCccchhcccc----CC-cCceEEEehhhhcCHHHHHHHHH-
Confidence 8999986531 56999999997654332 22 79999999999999999999987
Q ss_pred HhhhCC-Ccc---cceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCC--CCCCC----CCCCCCCCCCccccc
Q 004048 452 ASLFGQ-PSV---GANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPS--VQLPR----LYNPCDIVNGVEAES 521 (776)
Q Consensus 452 e~~FG~-P~v---~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~--~~lPr----~~~pf~p~~~~~dd~ 521 (776)
|++ |.| ++|+|++++ |+||++|||.||||++|+.|+|||+|..+.. ...|. ...+|+
T Consensus 110 ---FrflP~wr~ddiMIS~a~~-GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~--------- 176 (383)
T COG2850 110 ---FRFLPDWRIDDIMISFAAP-GGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFE--------- 176 (383)
T ss_pred ---hccCccccccceEEEEecC-CCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCC---------
Confidence 887 877 999999999 4599999999999999999999999998643 22231 112222
Q ss_pred ccccceEEEEcCCcEeeeCCCCceeeeeCCCccCCCccceeEEEeeccccCcchHHHHHHHHHHHhhhhc
Q 004048 522 SMAECRQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTLGVEVERPFEWEGFAHVALCCWNQAQ 591 (776)
Q Consensus 522 g~~~~~evvLePGDVLYIPRGwwH~a~A~deg~~~~~~~SLHLT~SI~~raP~~We~l~~~Al~~~~~~~ 591 (776)
+..+++|+|||||||||||||++++.++|+ |||||+|+|+..+.+.+++.+..+.+.
T Consensus 177 ---~~~d~vlepGDiLYiPp~~~H~gvae~dc~----------tySvG~r~Pn~~ell~~~~~~~~~~~~ 233 (383)
T COG2850 177 ---PDIDEVLEPGDILYIPPGFPHYGVAEDDCM----------TYSVGFRAPNTRELLSGFLDFFLQRES 233 (383)
T ss_pred ---chhhhhcCCCceeecCCCCCcCCccccccc----------ceeeeccCCcHHHHHHHHHhhcccccc
Confidence 237889999999999999999999999997 999999999999999999988877766
No 3
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=100.00 E-value=2.2e-38 Score=336.40 Aligned_cols=208 Identities=35% Similarity=0.586 Sum_probs=143.1
Q ss_pred HHHHHHhhhccCCeeeeccCCCccccccchhhhhcccccccchhhhhhhhhhccccCCCCCchhhhhhhchhhhhhhcCC
Q 004048 296 FENFIVNYWEVSPFLVRRSTDSLIEGNDIFTSFVQGLSSQESVCSFLSCIFQRHISCLPIASDELDILSFLNDMRHKLGC 375 (776)
Q Consensus 296 ~e~Fl~~YWEKKPLLIRra~p~~~~~~~~fs~f~~~l~~~~~~~~l~~s~~~g~~s~~pi~~deLa~lalle~V~~~l~~ 375 (776)
+++||++||||||++||++.+. |. ++++.++|+.+...+++
T Consensus 1 pe~F~~~yw~kkPl~i~~~~~~----------f~-----------------------~l~s~~~l~~L~~~~~l------ 41 (319)
T PF08007_consen 1 PETFLREYWEKKPLLIRRADPY----------FD-----------------------DLFSWDDLDELLREEDL------ 41 (319)
T ss_dssp HHHHHHHTTTTS-EEE--SGCC----------CC-----------------------CSCCHHHHCCHHHHSCH------
T ss_pred ChhHHHHHhccCCEEECCCCcc----------cc-----------------------CccCHHHHHHHHHhcCh------
Confidence 5899999999999999999985 22 45577888888888887
Q ss_pred CCccccceeEEEeCCCCcccccccCCCCCCccccCCcccc--c-cChhHHHHHhhCCceEEEcCcccCcHHH-----HHH
Q 004048 376 PLVYEQDIRVLKTDKISKKEVHFFPRISDSFDVKDPYLIY--A-NDISKCEEAYKEGYTIALRGMEFRFECL-----ANI 447 (776)
Q Consensus 376 p~~y~~d~Rlv~~~~~~~~E~h~~~~~~d~w~~r~Gp~~~--f-~d~~~l~~l~~~G~TLvL~~ld~~~p~L-----aeL 447 (776)
+.|+++. +... +.|...+||+.. + ...++.+.++.+|+++++..+..+++++ +.+
T Consensus 42 ------~~rl~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~l~~~~~~~~~~~~ 104 (319)
T PF08007_consen 42 ------ESRLVRG-GRDA----------DDYRLERGPFRNPRFRALPEKGWTLLVQGATLVLPELARLLQPFRFIPQWRL 104 (319)
T ss_dssp ------BBS-ECT-CECC----------CCCCCTCEEE-E-SCEE-HHHHHHHHHTTEEE-ECTCCEEC-GGGTHHHHHH
T ss_pred ------Hhhhhhc-cccc----------ccceecccccccccchhhhHhhHHHHHhhhhhhhHHHHHHHHHHhhChHHHH
Confidence 4588863 2111 346677777753 2 2456778999999999777766666655 889
Q ss_pred HHHHHhhhCCCcccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCC-CCCCCCCCcccccccccc
Q 004048 448 ADGLASLFGQPSVGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLY-NPCDIVNGVEAESSMAEC 526 (776)
Q Consensus 448 ~~aLe~~FG~P~v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~-~pf~p~~~~~dd~g~~~~ 526 (776)
++.+++. + .+++|+|+||+|++||+||||+|||||+|++|+|+|+||.++....+... .++.. .+. ..++
T Consensus 105 ~~~l~~~--~-~~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~-----~~~-~~~~ 175 (319)
T PF08007_consen 105 DDLLESF--C-PVGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQ-----LEE-FEPV 175 (319)
T ss_dssp HHHHHHH--S--EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTT-----CG---STS
T ss_pred HHHhhhc--c-ccceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccc-----ccc-Ccee
Confidence 9999987 5 59999999999999999999999999999999999999985332222111 11111 111 1346
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCCccCCCccceeEEEeeccccCcchHHHH
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTLGVEVERPFEWEGF 579 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~deg~~~~~~~SLHLT~SI~~raP~~We~l 579 (776)
.+++|+|||||||||||||++++.+ .|+|+|+|+. +| +|.++
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~--------~S~hltv~~~--~~-t~~dl 217 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTD--------PSLHLTVGFR--AP-TWADL 217 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS---------EEEEEEEEC--CE-BHHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCC--------CceEEEEeee--CC-chhhH
Confidence 8999999999999999999999976 5999999964 44 55543
No 4
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.74 E-value=2.2e-17 Score=164.53 Aligned_cols=98 Identities=27% Similarity=0.466 Sum_probs=61.1
Q ss_pred HhhhCCCcccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCC--CCCCCC----CCCCCCCC---c---cc
Q 004048 452 ASLFGQPSVGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSV--QLPRLY----NPCDIVNG---V---EA 519 (776)
Q Consensus 452 e~~FG~P~v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~--~lPr~~----~pf~p~~~---~---~d 519 (776)
.+.|+......|+|++++| .+.+.|||.++++++||.|+|+|+|++|... ..+... ..+...+. . ..
T Consensus 123 ~~~~~~~~~~~~l~ig~~g-s~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p 201 (251)
T PF13621_consen 123 PELFGKEPQSSNLWIGPPG-SFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFP 201 (251)
T ss_dssp HCHSCCHCCEEEEEEE-TT-EEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-C
T ss_pred hhhcccCccccEEEEeCCC-ceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhh
Confidence 3445541247899999984 5679999999999999999999999987432 112110 01111111 0 01
Q ss_pred ccccccceEEEEcCCcEeeeCCCCceeeeeC
Q 004048 520 ESSMAECRQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 520 d~g~~~~~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
........+++|+|||+||||+||||++++.
T Consensus 202 ~~~~~~~~~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 202 KFRKAPPYEVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp GGGG--EEEEEEETT-EEEE-TT-EEEEEES
T ss_pred hhccCceeEEEECCCeEEEECCCCeEEEEEc
Confidence 1223356999999999999999999999999
No 5
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.00 E-value=1.1e-10 Score=124.89 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=81.8
Q ss_pred cCcccCcHHHHHHHHHH-----HhhhCCCc--ccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCC--CCC
Q 004048 435 RGMEFRFECLANIADGL-----ASLFGQPS--VGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSV--QLP 505 (776)
Q Consensus 435 ~~ld~~~p~LaeL~~aL-----e~~FG~P~--v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~--~lP 505 (776)
...++++..+.++..++ +...+++. ++.|+|+.|.|+. .+.|+|.++++++|+.|+|+|++|+|.+. .+|
T Consensus 218 lAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~~~~w~GpaGtV-~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP 296 (355)
T KOG2132|consen 218 LAQHHLFDQIPELKFDISIPDYCSFPNFENEVVDINAWIGPAGTV-LPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYP 296 (355)
T ss_pred hhhhhhhccchhhhhccCCCceeecCCCCccccceeEEeccCCce-eccccccccceeeeeecceEEEEecCcccCCCCC
Confidence 45556666666666665 34556644 7999999998554 69999999999999999999999987542 344
Q ss_pred CC--CCCCCCCCCcccc------cccccceEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 506 RL--YNPCDIVNGVEAE------SSMAECRQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 506 r~--~~pf~p~~~~~dd------~g~~~~~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
.. +..+..++....+ ..+.+..+++|+|||+||+|+-|||.+++.+.
T Consensus 297 ~d~~~~~tsqvdvenPdlk~fp~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~d~ 351 (355)
T KOG2132|consen 297 TDTYLLETSQVDVENPDLKAFPKFAKARFLDCLLEPGEALFIPPKWWHYVRSLDK 351 (355)
T ss_pred ccchhhcccccccCCCChhhhhHHHHHHHHHHhcCCchhccccHHHhhhhhhccc
Confidence 21 1111111111111 12234577899999999999999999999875
No 6
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=98.07 E-value=3.8e-06 Score=91.86 Aligned_cols=94 Identities=17% Similarity=0.332 Sum_probs=66.6
Q ss_pred eeEEcCCCCCcccccccCCCe--EEEEEeeeEEEEEecCCCC-CCCCCC--CCCCCCCCcccccccccceEEEEcCCcEe
Q 004048 463 NMYLTPPNSQGLASHYDDHCV--FVCQLFGTKQWKIFAQPSV-QLPRLY--NPCDIVNGVEAESSMAECRQFLLREGDIL 537 (776)
Q Consensus 463 NaYlTPpg~qGf~pHyD~~DV--FVlQL~GrKrWrL~~pp~~-~lPr~~--~pf~p~~~~~dd~g~~~~~evvLePGDVL 537 (776)
-+|..|. +.+++.|.|.+.- |-+-|-|+|+|-++||+.. .+...+ .|+. ...+..+...-+..+..=+||+++
T Consensus 201 Fvy~Gp~-gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~-~~~~~ld~~~~~~lei~Qepge~V 278 (427)
T KOG2131|consen 201 FVYAGPA-GSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLP-SWITKLDLFRGPLLEIFQEPGETV 278 (427)
T ss_pred EEEeccC-CCCCccchhhhcCCcceeeeecceeEEEeChHHhhhhhhhccCcCCc-cccccccccccchhhhhccCCcee
Confidence 4899988 4578999998764 6889999999999997542 221111 1221 111222221223477788999999
Q ss_pred eeCCCCceeeeeCCCccCCCccceeEEEeeccc
Q 004048 538 YIPRGFSHEACTEDDGRTGLAEFSLHLTLGVEV 570 (776)
Q Consensus 538 YIPRGwwH~a~A~deg~~~~~~~SLHLT~SI~~ 570 (776)
|+|.||-|++..+++ |+||+.
T Consensus 279 FvPsGW~hQV~NL~d------------TISINH 299 (427)
T KOG2131|consen 279 FVPSGWHHQVLNLGD------------TISINH 299 (427)
T ss_pred eccCccccccccccc------------eeeecc
Confidence 999999999999987 999984
No 7
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=98.05 E-value=4.3e-06 Score=90.05 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=55.0
Q ss_pred eEEcCCCCCcccccccCCC--eEEEEEeeeEEEEEecCCCCC-----CCCCC--CC------CC---CCCCccccccccc
Q 004048 464 MYLTPPNSQGLASHYDDHC--VFVCQLFGTKQWKIFAQPSVQ-----LPRLY--NP------CD---IVNGVEAESSMAE 525 (776)
Q Consensus 464 aYlTPpg~qGf~pHyD~~D--VFVlQL~GrKrWrL~~pp~~~-----lPr~~--~p------f~---p~~~~~dd~g~~~ 525 (776)
+-+.|+ ..|.+.|.|+-- ..-.-|.|.|||-|+||...+ .+... ++ |. +....+.-..+-.
T Consensus 183 fvmGPa-rSGtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e~g~~~de~itwf~~~y~rt~~Pswp~E~k 261 (407)
T KOG2130|consen 183 FVMGPA-RSGTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDEGGKQPDEIITWFSTIYPRTQLPSWPDEYK 261 (407)
T ss_pred EEecCC-CCCceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeecccccCCCCcceechhhhccccccCCCCccccC
Confidence 446777 567899999954 344456799999999864321 11100 11 10 0000000001112
Q ss_pred ceEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 526 CRQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 526 ~~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
..|+...||+++|||-||||.+..+++
T Consensus 262 PIEc~q~pGEt~fVP~GWWHvVlNle~ 288 (407)
T KOG2130|consen 262 PIECLQKPGETMFVPSGWWHVVLNLEP 288 (407)
T ss_pred CceeeecCCceEEecCCeEEEEeccCc
Confidence 378999999999999999999999976
No 8
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=97.76 E-value=4.3e-05 Score=83.69 Aligned_cols=97 Identities=19% Similarity=0.286 Sum_probs=66.4
Q ss_pred hhhCCCcccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCC-CC-----CC-C------CCCCCCC--C--
Q 004048 453 SLFGQPSVGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSV-QL-----PR-L------YNPCDIV--N-- 515 (776)
Q Consensus 453 ~~FG~P~v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~-~l-----Pr-~------~~pf~p~--~-- 515 (776)
+.||.+.-.+|+|+.-. ..+...|-|.|+|+.+-|.|.|++-+.||.+. .+ |. . ..+|... +
T Consensus 155 eafgk~PdavNlWiG~~-~avTSlHkDhyENlYaViSGeKhFvlipP~d~~~lp~eiyp~g~ysy~~e~g~fk~e~~dEe 233 (437)
T KOG2508|consen 155 EAFGKVPDAVNLWIGKS-EAVTSLHKDHYENLYAVISGEKHFVLIPPDDANQLPLEIYPNGLYSYEGEDGPFKSEGLDEE 233 (437)
T ss_pred HHhCCChhheeeeeccc-ccccccccccccceEEEEeccceEEEeCcccccccceeecCCcceeeecCCCceeecccchh
Confidence 45888335899999877 45667999999999999999999999987542 12 21 1 1122111 0
Q ss_pred ---------------Ccc--------cc--cccccceEEEEcCCcEeeeCCCCceeeeeC
Q 004048 516 ---------------GVE--------AE--SSMAECRQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 516 ---------------~~~--------dd--~g~~~~~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
.+. .. ..+.....+.+.+|+++|.|+-|.|.+-..
T Consensus 234 ~~~~a~~~~svd~~~s~~~~a~~~~k~~l~~~~~k~~~~rv~a~~i~~lp~~w~h~~sq~ 293 (437)
T KOG2508|consen 234 DAAIAKTWFSVDPIGSPKELAVPQEKIPLLEAEYKPEMDRVLAGQILYLPEDWFHHVSQV 293 (437)
T ss_pred hhhhcceeeeecccCCHHHhccchhhCccccccccceeeeeeccccccChhhhhhhcccc
Confidence 000 00 111233667899999999999999988776
No 9
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=97.38 E-value=0.00022 Score=64.08 Aligned_cols=88 Identities=17% Similarity=0.301 Sum_probs=49.5
Q ss_pred eeEEcCCCCCcccccccCCCeE---EEEEeeeEEEEEecCCCCC-------------CCCCCCCCCCCCCcccc--cccc
Q 004048 463 NMYLTPPNSQGLASHYDDHCVF---VCQLFGTKQWKIFAQPSVQ-------------LPRLYNPCDIVNGVEAE--SSMA 524 (776)
Q Consensus 463 NaYlTPpg~qGf~pHyD~~DVF---VlQL~GrKrWrL~~pp~~~-------------lPr~~~pf~p~~~~~dd--~g~~ 524 (776)
.+|++.+ +..++.|.|++... ..-.-|.|.|.+.++.... .|... .....-..+.. ....
T Consensus 1 ~~~ig~~-~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~l~~~gi 78 (114)
T PF02373_consen 1 WLYIGMK-GSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSKESQNCPQFL-DHKNIFVSPEQLKKAGI 78 (114)
T ss_dssp EEEEE-T-TEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHHHHHHSTTGG-CTGGEEEGHHHHHHTTS
T ss_pred CEEEeCC-CcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhcccccccccc-cccccccceeeeeccCc
Confidence 3788888 45689999998765 3356679999999864311 01000 00000000011 1123
Q ss_pred cceEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 525 ECRQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 525 ~~~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
++..++-+|||.+++|+|++|++.+.+.
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred ccccceECCCCEEEECCCceEEEEeCCc
Confidence 5789999999999999999999999875
No 10
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=95.95 E-value=0.024 Score=56.70 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=46.9
Q ss_pred CcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 472 QGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 472 qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
+-+..|.+..|-+..|+.|+=...+... . ...+++|++||+++||+|..|...+.+
T Consensus 39 ~R~d~H~~~tdE~FyqleG~~~l~v~d~-g-----------------------~~~~v~L~eGd~flvP~gvpHsP~r~~ 94 (159)
T TIGR03037 39 ARTDFHDDPGEEFFYQLKGEMYLKVTEE-G-----------------------KREDVPIREGDIFLLPPHVPHSPQRPA 94 (159)
T ss_pred CCcccccCCCceEEEEEcceEEEEEEcC-C-----------------------cEEEEEECCCCEEEeCCCCCcccccCC
Confidence 3467899889999999999988887642 1 015679999999999999999999976
Q ss_pred C
Q 004048 552 D 552 (776)
Q Consensus 552 e 552 (776)
+
T Consensus 95 ~ 95 (159)
T TIGR03037 95 G 95 (159)
T ss_pred C
Confidence 5
No 11
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=95.83 E-value=0.029 Score=57.05 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=46.7
Q ss_pred cccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 473 GLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 473 Gf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
-+..|+|..|-|..|+.|.=..++..... ..+++|.+||+++||+|+.|..++.++
T Consensus 46 r~d~H~~~tdE~FyqleG~~~l~v~d~g~------------------------~~~v~L~eGd~fllP~gvpHsP~r~~~ 101 (177)
T PRK13264 46 RTDFHYDPGEEFFYQLEGDMYLKVQEDGK------------------------RRDVPIREGEMFLLPPHVPHSPQREAG 101 (177)
T ss_pred ccccccCCCceEEEEECCeEEEEEEcCCc------------------------eeeEEECCCCEEEeCCCCCcCCccCCC
Confidence 47889999999999999998888864210 145799999999999999999998654
No 12
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=95.80 E-value=0.015 Score=47.97 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=43.5
Q ss_pred CcccccccCCC-eEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeC
Q 004048 472 QGLASHYDDHC-VFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 472 qGf~pHyD~~D-VFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
...++|.+... .++.=+.|+-...+.. ..+.|+|||.+|+|+|.+|...+.
T Consensus 9 ~~~~~h~H~~~~e~~~vl~G~~~~~~~~----------------------------~~~~l~~Gd~~~i~~~~~H~~~n~ 60 (71)
T PF07883_consen 9 GSIPPHRHPGEDEFFYVLSGEGTLTVDG----------------------------ERVELKPGDAIYIPPGVPHQVRNP 60 (71)
T ss_dssp EEEEEEEESSEEEEEEEEESEEEEEETT----------------------------EEEEEETTEEEEEETTSEEEEEEE
T ss_pred CCCCCEECCCCCEEEEEEECCEEEEEcc----------------------------EEeEccCCEEEEECCCCeEEEEEC
Confidence 36788987776 8888899997777431 356999999999999999999998
Q ss_pred CC
Q 004048 551 DD 552 (776)
Q Consensus 551 de 552 (776)
++
T Consensus 61 ~~ 62 (71)
T PF07883_consen 61 GD 62 (71)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 13
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.047 Score=51.72 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=44.5
Q ss_pred eEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCC
Q 004048 464 MYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGF 543 (776)
Q Consensus 464 aYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGw 543 (776)
+.+-|.+..++..|++ .|-+.+=++|+=.+.+.. .++.|++||++|||+|.
T Consensus 41 ~~v~pg~~~~~~~H~~-~dE~~~Vl~G~g~v~~~~----------------------------~~~~v~~gd~~~iP~g~ 91 (127)
T COG0662 41 ILVKPGEEISLHHHHH-RDEHWYVLEGTGKVTIGG----------------------------EEVEVKAGDSVYIPAGT 91 (127)
T ss_pred EEECCCcccCcccccC-cceEEEEEeeEEEEEECC----------------------------EEEEecCCCEEEECCCC
Confidence 4444544446778888 566666677777776652 45699999999999999
Q ss_pred ceeeeeCCC
Q 004048 544 SHEACTEDD 552 (776)
Q Consensus 544 wH~a~A~de 552 (776)
+|..+..+.
T Consensus 92 ~H~~~N~G~ 100 (127)
T COG0662 92 PHRVRNTGK 100 (127)
T ss_pred cEEEEcCCC
Confidence 999999865
No 14
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.65 E-value=0.055 Score=50.76 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=53.5
Q ss_pred ceeEEcCCCCCcccccccC-CCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeC
Q 004048 462 ANMYLTPPNSQGLASHYDD-HCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIP 540 (776)
Q Consensus 462 aNaYlTPpg~qGf~pHyD~-~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIP 540 (776)
..+.+.| ++..+.|+-+ ++..+.-+.|+=++++..+ ..+|+|||++++|
T Consensus 46 ~~v~~~~--G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~----------------------------~~~l~~Gd~i~ip 95 (131)
T COG1917 46 VLVTFEP--GAVIPWHTHPLGEQTIYVLEGEGTVQLEGE----------------------------KKELKAGDVIIIP 95 (131)
T ss_pred EEEEECC--CcccccccCCCcceEEEEEecEEEEEecCC----------------------------ceEecCCCEEEEC
Confidence 3455544 4667999997 8899999999999888732 2388999999999
Q ss_pred CCCceeeeeCCCccCCCccceeEEEee
Q 004048 541 RGFSHEACTEDDGRTGLAEFSLHLTLG 567 (776)
Q Consensus 541 RGwwH~a~A~deg~~~~~~~SLHLT~S 567 (776)
+|.+|...+.++. ...||.+-
T Consensus 96 ~g~~H~~~a~~~~------~~~~l~v~ 116 (131)
T COG1917 96 PGVVHGLKAVEDE------PMVLLLVF 116 (131)
T ss_pred CCCeeeeccCCCC------ceeEEEEe
Confidence 9999999998763 23666554
No 15
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.75 E-value=0.064 Score=51.79 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=45.2
Q ss_pred cCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCcee
Q 004048 467 TPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHE 546 (776)
Q Consensus 467 TPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~ 546 (776)
-|+|+..=.-|.-.++..|--+.|+-+-+.... + ....+..|||++|||+|+.|+
T Consensus 53 i~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r-------L------------------E~ha~~~pGDf~YiPpgVPHq 107 (142)
T COG4101 53 IPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR-------L------------------EEHAEVGPGDFFYIPPGVPHQ 107 (142)
T ss_pred eCCCccccccccccccEEEEEEeceeeeeeccc-------e------------------eeeEEecCCCeEEcCCCCCCc
Confidence 366666545556678899999999887665431 0 045688999999999999999
Q ss_pred eeeCCC
Q 004048 547 ACTEDD 552 (776)
Q Consensus 547 a~A~de 552 (776)
-...++
T Consensus 108 p~N~S~ 113 (142)
T COG4101 108 PANLST 113 (142)
T ss_pred ccccCC
Confidence 887753
No 16
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=94.55 E-value=0.14 Score=49.12 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=46.4
Q ss_pred cceeEE-cCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEE--EEcCCcEe
Q 004048 461 GANMYL-TPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQF--LLREGDIL 537 (776)
Q Consensus 461 ~aNaYl-TPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~ev--vLePGDVL 537 (776)
.+.... .|. +-+.|||-+.+-+++=+.|+=+..+..+.... . ..+ .... .+++||++
T Consensus 35 ~~~~~~i~pg--~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~--------~-------~~~---~~~~~v~l~~Gdv~ 94 (144)
T PF00190_consen 35 AVRRVLIEPG--GLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQ--------E-------EFR---DFSQKVRLKAGDVF 94 (144)
T ss_dssp EEEEEEEETT--EEEEEEEESSEEEEEEEESEEEEEEEETTCSS--------S-------EEE---EEEEEEEEETTEEE
T ss_pred EEEeeehhcC--CccceeEeeeeEEeeeeccceEEEEEecCCcc--------c-------cce---eeeceeeeecccce
Confidence 344343 443 56799999777788888898776666542200 0 000 1222 59999999
Q ss_pred eeCCCCceeeeeCC
Q 004048 538 YIPRGFSHEACTED 551 (776)
Q Consensus 538 YIPRGwwH~a~A~d 551 (776)
+||+|++|+..+.+
T Consensus 95 ~vP~G~~h~~~n~~ 108 (144)
T PF00190_consen 95 VVPAGHPHWIINDG 108 (144)
T ss_dssp EE-TT-EEEEEECS
T ss_pred eeccceeEEEEcCC
Confidence 99999999999986
No 17
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=94.09 E-value=0.18 Score=45.06 Aligned_cols=54 Identities=22% Similarity=0.457 Sum_probs=38.6
Q ss_pred CCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeC
Q 004048 471 SQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 471 ~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
...+++|+-++-.|++.+.|+-.+.+-. .+..++|||++++|+|.+|...+.
T Consensus 13 ~~~~~~h~h~~~~i~~v~~G~~~~~~~~----------------------------~~~~l~~g~~~li~p~~~H~~~~~ 64 (136)
T PF02311_consen 13 NFEFPPHWHDFYEIIYVLSGEGTLHIDG----------------------------QEYPLKPGDLFLIPPGQPHSYYPD 64 (136)
T ss_dssp T-SEEEETT-SEEEEEEEEE-EEEEETT----------------------------EEEEE-TT-EEEE-TTS-EEEEE-
T ss_pred CCccCCEECCCEEEEEEeCCEEEEEECC----------------------------EEEEEECCEEEEecCCccEEEecC
Confidence 3457889999999999999999887643 456899999999999999999998
Q ss_pred CC
Q 004048 551 DD 552 (776)
Q Consensus 551 de 552 (776)
++
T Consensus 65 ~~ 66 (136)
T PF02311_consen 65 SN 66 (136)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 18
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=92.49 E-value=0.53 Score=52.64 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=46.9
Q ss_pred eeEEcCCCCCcccccccCC-CeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCC
Q 004048 463 NMYLTPPNSQGLASHYDDH-CVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPR 541 (776)
Q Consensus 463 NaYlTPpg~qGf~pHyD~~-DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPR 541 (776)
.+.+.|. +...+|+-.+ |=+..=+.|+=+.++..+.. ...+..|+|||++|||+
T Consensus 249 ~~~l~PG--~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g-----------------------~~~~~~l~~GD~~~iP~ 303 (367)
T TIGR03404 249 IVTVEPG--AMRELHWHPNADEWQYFIQGQARMTVFAAGG-----------------------NARTFDYQAGDVGYVPR 303 (367)
T ss_pred EEEECCC--CccCCeeCcCCCeEEEEEEEEEEEEEEecCC-----------------------cEEEEEECCCCEEEECC
Confidence 4455543 5678999775 44666677777888875311 01556899999999999
Q ss_pred CCceeeeeCCC
Q 004048 542 GFSHEACTEDD 552 (776)
Q Consensus 542 GwwH~a~A~de 552 (776)
|..|..+..++
T Consensus 304 g~~H~i~N~G~ 314 (367)
T TIGR03404 304 NMGHYVENTGD 314 (367)
T ss_pred CCeEEEEECCC
Confidence 99999998764
No 19
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=92.04 E-value=0.67 Score=51.88 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=49.9
Q ss_pred cceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeC
Q 004048 461 GANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIP 540 (776)
Q Consensus 461 ~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIP 540 (776)
.+.+.+.|. +...+|+-..+=++.-+.|+=+..+...... ....+|+|||++|+|
T Consensus 69 ~~~~~l~pG--~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~-----------------------~~~~~L~~GD~~~fP 123 (367)
T TIGR03404 69 GVNMRLEPG--AIRELHWHKEAEWAYVLYGSCRITAVDENGR-----------------------NYIDDVGAGDLWYFP 123 (367)
T ss_pred ceEEEEcCC--CCCCcccCCCceEEEEEeeEEEEEEEcCCCc-----------------------EEEeEECCCCEEEEC
Confidence 345666665 3467888877778999999999888752110 133379999999999
Q ss_pred CCCceeeeeCCC
Q 004048 541 RGFSHEACTEDD 552 (776)
Q Consensus 541 RGwwH~a~A~de 552 (776)
+|++|..++.++
T Consensus 124 ~g~~H~~~n~~~ 135 (367)
T TIGR03404 124 PGIPHSLQGLDE 135 (367)
T ss_pred CCCeEEEEECCC
Confidence 999999998754
No 20
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=90.34 E-value=0.41 Score=58.25 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=54.1
Q ss_pred cccccccCCCeEEE--EEeeeEEEEEecCCCCCCCCCCCCCCC-CCCcccccccc--cceEEEEcCCcEeeeCCCCceee
Q 004048 473 GLASHYDDHCVFVC--QLFGTKQWKIFAQPSVQLPRLYNPCDI-VNGVEAESSMA--ECRQFLLREGDILYIPRGFSHEA 547 (776)
Q Consensus 473 Gf~pHyD~~DVFVl--QL~GrKrWrL~~pp~~~lPr~~~pf~p-~~~~~dd~g~~--~~~evvLePGDVLYIPRGwwH~a 547 (776)
-...|.|.-.-.+. =+.|.|...+-+|....+.+ |..|.. ........|.. -|+.++|++|+.|+||-||+|.+
T Consensus 138 Ytdfhidfggtsvwyhil~G~K~f~lI~pt~~nl~~-ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV 216 (776)
T KOG1633|consen 138 YTDFHIDFGGTSVWYHILAGEKTFYLIPPTCENLEL-YECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAV 216 (776)
T ss_pred ccccccCCCCcchhhhhhccccceeeeCCcccchhh-hhhhhhcccccccccCCccceeEEEEeccCceEecccceeEee
Confidence 35778887654444 57899988888766555542 443431 11111112322 47889999999999999999999
Q ss_pred eeCCCcc
Q 004048 548 CTEDDGR 554 (776)
Q Consensus 548 ~A~deg~ 554 (776)
.+..++.
T Consensus 217 ~Tp~d~l 223 (776)
T KOG1633|consen 217 LTPTDCL 223 (776)
T ss_pred ecCcchh
Confidence 9987654
No 21
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=90.17 E-value=0.99 Score=45.13 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=39.3
Q ss_pred cccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 473 GLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 473 Gf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
-...|+|..+-|..|+.|.=.-++... . ...++++++|||.++|+++.|..+-.++
T Consensus 45 R~DyHine~eE~FyQ~kG~m~Lkv~e~-g-----------------------~~kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 45 RTDYHINETEEFFYQLKGDMCLKVVED-G-----------------------KFKDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp -SSEEE-SS-EEEEEEES-EEEEEEET-T-----------------------EEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred CCccccCCcceEEEEEeCcEEEEEEeC-C-----------------------ceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 358999999999999999988887752 1 1267899999999999999999999764
No 22
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=90.14 E-value=1.1 Score=46.82 Aligned_cols=68 Identities=26% Similarity=0.464 Sum_probs=47.4
Q ss_pred cceeEEcCCCCCcccccccCC-Ce--EEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEe
Q 004048 461 GANMYLTPPNSQGLASHYDDH-CV--FVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDIL 537 (776)
Q Consensus 461 ~aNaYlTPpg~qGf~pHyD~~-DV--FVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVL 537 (776)
+.=..+||+ ++--.||... |= +..-+.|+=+..|..+.. +...+.++|||+.
T Consensus 82 g~e~~~t~G--~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G-----------------------~~~v~~~~~Gd~i 136 (209)
T COG2140 82 GAEVFKTPG--AMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG-----------------------EARVIAVRAGDVI 136 (209)
T ss_pred ceEEEecCC--cccccccCCCCCcccEEEEEeccEEEEEEcCCC-----------------------cEEEEEecCCcEE
Confidence 333455554 3446787763 33 555577888888876421 1267799999999
Q ss_pred eeCCCCceeeeeCCCc
Q 004048 538 YIPRGFSHEACTEDDG 553 (776)
Q Consensus 538 YIPRGwwH~a~A~deg 553 (776)
|||+||.|..+..+++
T Consensus 137 yVPp~~gH~t~N~Gd~ 152 (209)
T COG2140 137 YVPPGYGHYTINTGDE 152 (209)
T ss_pred EeCCCcceEeecCCCC
Confidence 9999999999998764
No 23
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=89.70 E-value=1.6 Score=45.07 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=23.5
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
..+.++|||++|||+|+.|.....++
T Consensus 120 ~~~~v~pGd~v~IPpg~~H~~iN~G~ 145 (191)
T PRK04190 120 RWIEMEPGTVVYVPPYWAHRSVNTGD 145 (191)
T ss_pred EEEEECCCCEEEECCCCcEEeEECCC
Confidence 56799999999999999999998765
No 24
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=88.60 E-value=1.7 Score=41.84 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=40.4
Q ss_pred CcccccccCCCeEEEEEeeeEEEE-EecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeC
Q 004048 472 QGLASHYDDHCVFVCQLFGTKQWK-IFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 472 qGf~pHyD~~DVFVlQL~GrKrWr-L~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
+..+.|+-.++-++.-++|+=... +... .+..|+|||.+|+|++.+|...+.
T Consensus 46 ~~~~~h~h~~~E~~yVL~G~~~~~~i~~g---------------------------~~~~L~aGD~i~~~~~~~H~~~N~ 98 (125)
T PRK13290 46 TETHLHYKNHLEAVYCIEGEGEVEDLATG---------------------------EVHPIRPGTMYALDKHDRHYLRAG 98 (125)
T ss_pred CcccceeCCCEEEEEEEeCEEEEEEcCCC---------------------------EEEEeCCCeEEEECCCCcEEEEcC
Confidence 356777765555777788877666 3211 456999999999999999999987
Q ss_pred CC
Q 004048 551 DD 552 (776)
Q Consensus 551 de 552 (776)
++
T Consensus 99 e~ 100 (125)
T PRK13290 99 ED 100 (125)
T ss_pred CC
Confidence 43
No 25
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=88.38 E-value=0.3 Score=53.96 Aligned_cols=125 Identities=15% Similarity=0.210 Sum_probs=80.1
Q ss_pred HHHHHhhCCceEEEcCcccCcHHHHHHHHH-HHhhhCCCcccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecC
Q 004048 421 KCEEAYKEGYTIALRGMEFRFECLANIADG-LASLFGQPSVGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQ 499 (776)
Q Consensus 421 ~l~~l~~~G~TLvL~~ld~~~p~LaeL~~a-Le~~FG~P~v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~p 499 (776)
.+.+.+..|+-+++.+...++|.+...-.. ++...|+ -..|-..+....|+|-.++++.|+.|-||-.+.+|
T Consensus 140 ~l~d~~~~~~p~~~l~~~~hwpa~~kw~l~~l~~va~~-------rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~p 212 (355)
T KOG2132|consen 140 FLNDTVGRGTPVILLGFNWHWPAIQKWSLGYLQQVAGN-------RTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFEP 212 (355)
T ss_pred HHHHhhcCCCceEEecccccchHhhhcchhHHHhcccc-------eeeeeecccccchhHHHhhhHHHhhhhhhhhcCCc
Confidence 566788999999999999999998877322 2233332 12222234457899999999999999999999987
Q ss_pred CCCC-CCCCCCCCCCCCCcc-----cc-------cc-cccceEEEEcCCcEeeeCCCCceeeeeCCCc
Q 004048 500 PSVQ-LPRLYNPCDIVNGVE-----AE-------SS-MAECRQFLLREGDILYIPRGFSHEACTEDDG 553 (776)
Q Consensus 500 p~~~-lPr~~~pf~p~~~~~-----dd-------~g-~~~~~evvLePGDVLYIPRGwwH~a~A~deg 553 (776)
.... ++ .+..|..+...+ ++ .+ ......+....|||+|||--|||...+.--|
T Consensus 213 ~~~~YlA-qh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~hNi~~qv~G 279 (355)
T KOG2132|consen 213 RECLYLA-QHHLFDQIPELKFDISIPDYCSFPNFENEVVDINAWIGPAGTVLPIHMDPWHNILSQVFG 279 (355)
T ss_pred cccchhh-hhhhhccchhhhhccCCCceeecCCCCccccceeEEeccCCceeccccccccceeeeeec
Confidence 5211 11 111121111110 00 01 1223455666699999999999999987444
No 26
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=88.22 E-value=2.8 Score=40.37 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=38.7
Q ss_pred CcccccccC-CCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeC
Q 004048 472 QGLASHYDD-HCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 472 qGf~pHyD~-~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
+.+++|+-. .+-++.=+.|+=.-.+..+... ......+++||++|||+|.+|...+.
T Consensus 41 ~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~----------------------~~~~~~l~~GD~~~ip~g~~H~~~n~ 98 (146)
T smart00835 41 GMLPPHYHPRATELLYVVRGEGRVGVVDPNGN----------------------KVYDARLREGDVFVVPQGHPHFQVNS 98 (146)
T ss_pred cCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCC----------------------eEEEEEecCCCEEEECCCCEEEEEcC
Confidence 457788843 4444444666655555432110 12567999999999999999999886
Q ss_pred CC
Q 004048 551 DD 552 (776)
Q Consensus 551 de 552 (776)
++
T Consensus 99 ~~ 100 (146)
T smart00835 99 GD 100 (146)
T ss_pred CC
Confidence 54
No 27
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=87.98 E-value=0.45 Score=48.72 Aligned_cols=28 Identities=29% Similarity=0.637 Sum_probs=21.0
Q ss_pred ceEEEEcCCcEeeeCCCCceeeeeCCCc
Q 004048 526 CRQFLLREGDILYIPRGFSHEACTEDDG 553 (776)
Q Consensus 526 ~~evvLePGDVLYIPRGwwH~a~A~deg 553 (776)
+.-+.+.|||+.|||+||.|.....++.
T Consensus 109 ~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 109 VIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred EEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 4667999999999999999999998753
No 28
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=87.56 E-value=1.2 Score=47.32 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=34.9
Q ss_pred CcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeee
Q 004048 472 QGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACT 549 (776)
Q Consensus 472 qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A 549 (776)
..|..|+|..+.. .-++|+=+.++.. .+++++|||++|||+|..|+-.+
T Consensus 167 ~sf~wtl~~dEi~-YVLEGe~~l~IdG----------------------------~t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 167 AFFPWTLNYDEID-MVLEGELHVRHEG----------------------------ETMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred CccceeccceEEE-EEEEeEEEEEECC----------------------------EEEEeCCCcEEEECCCCeEEecC
Confidence 4577777765544 4467877766632 45699999999999999955533
No 29
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=87.19 E-value=1.7 Score=46.35 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.7
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCCc
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDDG 553 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~deg 553 (776)
....++|||++|||+|..|+..+.++.
T Consensus 218 ~~~~V~~GD~i~i~~~~~h~~~~~G~~ 244 (260)
T TIGR03214 218 NWVPVEAGDYIWMGAYCPQACYAGGRG 244 (260)
T ss_pred EEEEecCCCEEEECCCCCEEEEecCCC
Confidence 456899999999999999999998653
No 30
>PRK13500 transcriptional activator RhaR; Provisional
Probab=86.47 E-value=2.1 Score=46.04 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=47.9
Q ss_pred hhhCCCcccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEc
Q 004048 453 SLFGQPSVGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLR 532 (776)
Q Consensus 453 ~~FG~P~v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLe 532 (776)
++|..+...+.+...-+ ...+++|+.++.-+++-..|+=.-.+-. ....+.
T Consensus 41 ~~f~~~~~~~~v~~~~~-~~~~~~H~H~~~el~~v~~G~g~~~v~~----------------------------~~~~l~ 91 (312)
T PRK13500 41 DFFASDQQAVAVADRYP-QDVFAEHTHDFCELVIVWRGNGLHVLND----------------------------RPYRIT 91 (312)
T ss_pred hhcCCCCCCEEEecCCC-CCCCCccccceEEEEEEEcCeEEEEECC----------------------------EEEeec
Confidence 34543322333333333 2468999988888888888876644432 445888
Q ss_pred CCcEeeeCCCCceeeeeCCC
Q 004048 533 EGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 533 PGDVLYIPRGwwH~a~A~de 552 (776)
|||++|||+|..|...+.++
T Consensus 92 ~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 92 RGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCeEEEECCCCeecccccCC
Confidence 99999999999999876543
No 31
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=85.34 E-value=4.4 Score=42.29 Aligned_cols=62 Identities=24% Similarity=0.364 Sum_probs=44.6
Q ss_pred cceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeC
Q 004048 461 GANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIP 540 (776)
Q Consensus 461 ~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIP 540 (776)
...+++....+...++|+.++--|++=+.|.-.-.+-. ..+.+.|||+++||
T Consensus 23 ~~~~~~~~~~~~~~~~H~H~~~ei~~v~~G~~~~~i~~----------------------------~~~~l~~g~l~~i~ 74 (278)
T PRK10296 23 NFHVFIYNKTESVSGLHQHDYYEFTLVLTGRYYQEING----------------------------KRVLLERGDFVFIP 74 (278)
T ss_pred eEEEEEEehhhcCCCCcccccEEEEEEEeceEEEEECC----------------------------EEEEECCCcEEEeC
Confidence 45566665544456899988777777777776544422 44589999999999
Q ss_pred CCCceeeeeC
Q 004048 541 RGFSHEACTE 550 (776)
Q Consensus 541 RGwwH~a~A~ 550 (776)
+|..|.....
T Consensus 75 p~~~H~~~~~ 84 (278)
T PRK10296 75 LGSHHQSFYE 84 (278)
T ss_pred CCCccceeee
Confidence 9999987544
No 32
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=83.84 E-value=4.2 Score=40.62 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=36.1
Q ss_pred cccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 477 HYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 477 HyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
|.-..+=|+.-+.|+=.-.+.. ....|+|||.+|+|.+.+|...+.++
T Consensus 124 ~~h~~~E~~~Vl~G~~~~~~~~----------------------------~~~~l~~Gd~~~~~~~~~H~~~n~~~ 171 (185)
T PRK09943 124 IKHQGEEIGTVLEGEIVLTING----------------------------QDYHLVAGQSYAINTGIPHSFSNTSA 171 (185)
T ss_pred cccCCcEEEEEEEeEEEEEECC----------------------------EEEEecCCCEEEEcCCCCeeeeCCCC
Confidence 3334467777788877665532 45689999999999999999888654
No 33
>PRK13502 transcriptional activator RhaR; Provisional
Probab=82.50 E-value=4.2 Score=42.47 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=40.7
Q ss_pred CcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 472 QGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 472 qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
..+++|+.++-.+++...|+-.-.+.. ....+.|||+++||+|.+|.....+
T Consensus 29 ~~~~~H~h~~~~l~~v~~G~~~~~i~~----------------------------~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 29 DVFAEHTHEFCELVMVWRGNGLHVLNE----------------------------RPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCccccceEEEEEEecCcEEEEECC----------------------------EEEeecCCcEEEECCCCcccccccC
Confidence 447899988888888899985544422 4458899999999999999876543
No 34
>PRK13501 transcriptional activator RhaR; Provisional
Probab=82.31 E-value=3.8 Score=43.22 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=39.8
Q ss_pred cccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 473 GLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 473 Gf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
.+++|+.++--+++-..|+=.-.|-. ..+.++|||+++||+|..|.....+
T Consensus 30 ~~~~H~H~~~ei~~i~~G~~~~~i~~----------------------------~~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 30 TFVEHTHQFCEIVIVWRGNGLHVLND----------------------------HPYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCccccccceeEEEEecCceEEEECC----------------------------eeeeecCCeEEEEcCCCcccccccC
Confidence 47899988777777778876655532 3458899999999999999987653
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=82.24 E-value=3.6 Score=47.66 Aligned_cols=113 Identities=24% Similarity=0.275 Sum_probs=83.7
Q ss_pred HHHHHHHHhhhhccccCCCCCCCchhhHHHHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHhhh
Q 004048 41 EFIIKKCLNRLRLSLLSQSQPTLPIPILSLLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQIAADAEVVRGLVSLLR 120 (776)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~s~~~~~~~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~a~d~~~~~~l~~~l~ 120 (776)
..+|+|||.... +. .+--.+..+|-..|.+..+ .|=.+++-.+|-.+=-+ +.--++..|.+++..++..|+
T Consensus 59 ~~iL~~~l~~~~-----~~--~l~~~~~~~L~~gL~h~~~-~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 59 CDILKRLLSALS-----PD--SLLPQYQPFLQRGLTHPSP-KVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred HHHHHHHHhccC-----HH--HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHc
Confidence 455777777654 11 2233456677777888777 77777787777665333 334567889999999999999
Q ss_pred cchhhHHHHHhhhhhccccchhhhhhhhcchhHHHHHHHHHH
Q 004048 121 NSEKRVLVAAANAVLDLSTTSVGRQKLLESSALEALLLIFLQ 162 (776)
Q Consensus 121 ~~~~~v~~~a~n~vld~s~t~~~~~~l~~~~~l~~~~~~~~~ 162 (776)
..+-.|..+|++++-+++.+..|.+.|.....+..+..+..+
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~ 171 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ 171 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999998776665555544333
No 36
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=80.68 E-value=8.6 Score=41.11 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.4
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
...+|+|||.+|+|+|..|.-...++
T Consensus 98 ~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 98 ETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred EEEEECCCCEEEECCCCCEEEEECCC
Confidence 34599999999999999999988654
No 37
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=80.55 E-value=1.8 Score=35.37 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=24.1
Q ss_pred cceeEEcCCCCCcccccccCCC--eEEEEEee
Q 004048 461 GANMYLTPPNSQGLASHYDDHC--VFVCQLFG 490 (776)
Q Consensus 461 ~aNaYlTPpg~qGf~pHyD~~D--VFVlQL~G 490 (776)
..++|+.+. ...++.|+|+++ ++.+|+.|
T Consensus 27 ~~~~~~G~~-~s~t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 27 VPYLYMGMA-GSVTPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred cceEEEeCC-CCccceeEcCCCeEEEEEecCC
Confidence 377999998 557899999999 88888765
No 38
>PLN00212 glutelin; Provisional
Probab=79.89 E-value=11 Score=44.28 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=43.1
Q ss_pred CcccccccCCC--eEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccc-cccccceEEEEcCCcEeeeCCCCceeee
Q 004048 472 QGLASHYDDHC--VFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAE-SSMAECRQFLLREGDILYIPRGFSHEAC 548 (776)
Q Consensus 472 qGf~pHyD~~D--VFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd-~g~~~~~evvLePGDVLYIPRGwwH~a~ 548 (776)
+=+.|||-+.+ ++|+|..|.=-+.+ |.+....-..++++......... .....-....|++|||+.||+|..|+..
T Consensus 91 gL~lP~y~na~~liyV~qG~G~~G~v~-pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~y 169 (493)
T PLN00212 91 GLLLPRYSNTPGLVYIIQGRGSMGLTF-PGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFY 169 (493)
T ss_pred cccCccccCCCeEEEEEeCeEEEEEEe-CCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEE
Confidence 34577777655 46777777766654 21221111111111100000000 0001113459999999999999999999
Q ss_pred eCCC
Q 004048 549 TEDD 552 (776)
Q Consensus 549 A~de 552 (776)
..++
T Consensus 170 N~Gd 173 (493)
T PLN00212 170 NDGD 173 (493)
T ss_pred eCCC
Confidence 9865
No 39
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=78.65 E-value=6.5 Score=37.96 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=34.1
Q ss_pred cCCCC-CcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCC-cEeeeCCCCc
Q 004048 467 TPPNS-QGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREG-DILYIPRGFS 544 (776)
Q Consensus 467 TPpg~-qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePG-DVLYIPRGww 544 (776)
+|++. .|--.|....+ +++-+.|+=+-.+..... ..+++|... ..||||+|+|
T Consensus 40 ~~~~~~RG~H~Hk~~~~-~~~~l~Gs~~v~~~d~~~------------------------~~~~~L~~~~~~L~Ippg~w 94 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQ-WFIVLSGSFKVVLDDGRE------------------------EEEFILDEPNKGLYIPPGVW 94 (131)
T ss_dssp --SS--EEEEEESS--E-EEEEEES-EEEEEE-SS-------------------------EEEEEE--TTEEEEE-TT-E
T ss_pred CCCCCcccccccccccE-EEEEEeCEEEEEEecCCC------------------------cEEEEECCCCeEEEECCchh
Confidence 45533 44445544444 445578888777654210 145566655 4999999999
Q ss_pred eeeeeCCCccCCCccceeEEEeecc
Q 004048 545 HEACTEDDGRTGLAEFSLHLTLGVE 569 (776)
Q Consensus 545 H~a~A~deg~~~~~~~SLHLT~SI~ 569 (776)
|.....+++ |+=|.++-.
T Consensus 95 ~~~~~~s~~-------svlLv~as~ 112 (131)
T PF05523_consen 95 HGIKNFSED-------SVLLVLASE 112 (131)
T ss_dssp EEEE---TT--------EEEEEESS
T ss_pred hHhhccCCC-------cEEEEEcCC
Confidence 999988653 454555543
No 40
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=78.19 E-value=7.2 Score=44.95 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.2
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
.+..|+|||.+|+|+|..|.....++
T Consensus 415 ~~~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 415 ETLLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 56699999999999999999998765
No 41
>PRK11171 hypothetical protein; Provisional
Probab=76.12 E-value=17 Score=38.92 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.8
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
.+.+|++||.+|+|+|..|.-...++
T Consensus 101 ~~~~L~~GDsi~~p~~~~H~~~N~g~ 126 (266)
T PRK11171 101 KTHALSEGGYAYLPPGSDWTLRNAGA 126 (266)
T ss_pred EEEEECCCCEEEECCCCCEEEEECCC
Confidence 45699999999999999999987654
No 42
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=75.18 E-value=6.9 Score=42.16 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=48.3
Q ss_pred ccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeee
Q 004048 460 VGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYI 539 (776)
Q Consensus 460 v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYI 539 (776)
-.+.+-.-|+. ..+++||.+.--+++++.|+=...+.. .+++|.|||++.|
T Consensus 26 ~~~~~~~~~~~-~m~~~HwH~e~Ei~yv~~G~~~~~i~g----------------------------~~~~l~~Gd~ili 76 (302)
T PRK10371 26 QRLEIEFRPPH-IMPTSHWHGQVEVNVPFDGDVEYLINN----------------------------EKVQINQGHITLF 76 (302)
T ss_pred ceeEEEeeCCC-CCCCCCccccEEEEEecCCcEEEEECC----------------------------EEEEEcCCcEEEE
Confidence 35666777774 447899999888889999964433321 5569999999999
Q ss_pred CCCCceeeeeCCC
Q 004048 540 PRGFSHEACTEDD 552 (776)
Q Consensus 540 PRGwwH~a~A~de 552 (776)
|+|..|.....++
T Consensus 77 ~s~~~H~~~~~~~ 89 (302)
T PRK10371 77 WACTPHQLTDPGN 89 (302)
T ss_pred ecCCcccccccCC
Confidence 9999998876543
No 43
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=74.45 E-value=12 Score=37.28 Aligned_cols=26 Identities=42% Similarity=0.783 Sum_probs=23.2
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
....+.+||.+|||+|..|...+.+.
T Consensus 102 ~~~~~~~g~sv~Ip~g~~H~i~n~g~ 127 (151)
T PF01050_consen 102 EEFTLKEGDSVYIPRGAKHRIENPGK 127 (151)
T ss_pred EEEEEcCCCEEEECCCCEEEEECCCC
Confidence 66799999999999999999988754
No 44
>PLN00212 glutelin; Provisional
Probab=74.05 E-value=11 Score=44.38 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=41.7
Q ss_pred CcccccccCC-CeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeC
Q 004048 472 QGLASHYDDH-CVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 472 qGf~pHyD~~-DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
+-++|||... ..+++-+.|+=+-.+-.+.. ....+-+|++|||+.||+|++|...+.
T Consensus 359 am~~PHwn~nA~eI~yV~rG~g~vqvV~~~g----------------------~~vf~~~L~~GdvfVVPqg~~v~~~A~ 416 (493)
T PLN00212 359 ALLSPFWNVNAHSVVYITQGRARVQVVSNNG----------------------KTVFNGVLRPGQLLIIPQHYAVLKKAE 416 (493)
T ss_pred cccCCeecCCCCEEEEEeecceEEEEEcCCC----------------------CEEEEEEEcCCCEEEECCCCeEEEeec
Confidence 4579999763 34555566666666653210 012566999999999999999999887
Q ss_pred CCc
Q 004048 551 DDG 553 (776)
Q Consensus 551 deg 553 (776)
+++
T Consensus 417 ~eg 419 (493)
T PLN00212 417 REG 419 (493)
T ss_pred CCc
Confidence 654
No 45
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=73.69 E-value=9.7 Score=39.72 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=37.4
Q ss_pred cccccccC-CCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 473 GLASHYDD-HCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 473 Gf~pHyD~-~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
-+++|+.+ +--+++-..|+-.-.+.. ..+.++|||++.+|+|..|.....+
T Consensus 35 ~~~~H~H~~~~~l~~~~~G~~~~~~~~----------------------------~~~~l~~g~~~ii~~~~~H~~~~~~ 86 (287)
T TIGR02297 35 NMPVHFHDRYYQLHYLTEGSIALQLDE----------------------------HEYSEYAPCFFLTPPSVPHGFVTDL 86 (287)
T ss_pred CCCCcccccceeEEEEeeCceEEEECC----------------------------EEEEecCCeEEEeCCCCccccccCC
Confidence 36889876 556666777765433321 3458899999999999999987654
Q ss_pred C
Q 004048 552 D 552 (776)
Q Consensus 552 e 552 (776)
+
T Consensus 87 ~ 87 (287)
T TIGR02297 87 D 87 (287)
T ss_pred C
Confidence 3
No 46
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=72.49 E-value=22 Score=36.04 Aligned_cols=86 Identities=14% Similarity=0.226 Sum_probs=44.9
Q ss_pred cceeEEc--CCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEee
Q 004048 461 GANMYLT--PPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILY 538 (776)
Q Consensus 461 ~aNaYlT--Ppg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLY 538 (776)
.+.+|+- .| +.+.++|--..+=+.+-+.|+=.-.++. ....+| |+ .+++...|++.++
T Consensus 43 evEVwlQTfAP-G~~TPiHRHsCEEVFvVLkG~GTl~l~~-~~~~~p----------------G~--pqef~~~pnSTf~ 102 (167)
T PF02041_consen 43 EVEVWLQTFAP-GSATPIHRHSCEEVFVVLKGSGTLYLAS-SHEKYP----------------GK--PQEFPIFPNSTFH 102 (167)
T ss_dssp SEEEEEEEE-T-T-B--EEEESS-EEEEEEE--EEEEE---SSSSS------------------S---EEEEE-TTEEEE
T ss_pred eeeEEeeeecC-CCCCCCccccccEEEEEEecceEEEEec-ccccCC----------------CC--ceEEEecCCCeEE
Confidence 4455542 23 4678999988875555678887777773 222222 22 2788999999999
Q ss_pred eCCCCceeeeeCCCccCCCccceeEEEeeccccCc
Q 004048 539 IPRGFSHEACTEDDGRTGLAEFSLHLTLGVEVERP 573 (776)
Q Consensus 539 IPRGwwH~a~A~deg~~~~~~~SLHLT~SI~~raP 573 (776)
||.+-.|+....++. .-+++.+-+. |+|
T Consensus 103 IPvn~~HQv~NT~e~------eDlqvlViiS-rpP 130 (167)
T PF02041_consen 103 IPVNDAHQVWNTNEH------EDLQVLVIIS-RPP 130 (167)
T ss_dssp E-TT--EEEE---SS------S-EEEEEEEE-SSS
T ss_pred eCCCCcceeecCCCC------cceEEEEEec-CCC
Confidence 999999999998764 3566666554 444
No 47
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=71.98 E-value=3.2 Score=41.61 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=13.9
Q ss_pred eEEEEcCCcEeeeCCCCcee
Q 004048 527 RQFLLREGDILYIPRGFSHE 546 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~ 546 (776)
..++.+|||++|||+|.==.
T Consensus 113 ~~~~A~~GDvi~iPkGs~I~ 132 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGSTIT 132 (152)
T ss_dssp EEEEEETT-EEEE-TT-EEE
T ss_pred EEEEEcCCcEEEECCCCEEE
Confidence 66799999999999996433
No 48
>PRK13503 transcriptional activator RhaS; Provisional
Probab=71.86 E-value=6.7 Score=40.64 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=42.9
Q ss_pred cceeEEcCC-CCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeee
Q 004048 461 GANMYLTPP-NSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYI 539 (776)
Q Consensus 461 ~aNaYlTPp-g~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYI 539 (776)
...+++.+. ....+++|+.++--+++=..|.=.-.+.. ..+.+.|||+++|
T Consensus 14 ~~~~~~~~~~~~~~~~~H~H~~~ei~~v~~G~~~~~i~~----------------------------~~~~l~~g~~~~i 65 (278)
T PRK13503 14 NAPVAIEPRLPQAAFPEHHHDFHEIVIVEHGTGIHVFNG----------------------------QPYTLSGGTVCFV 65 (278)
T ss_pred CCCeeeecCCccccccccccCceeEEEEecCceeeEecC----------------------------CcccccCCcEEEE
Confidence 344455322 13557889988877777777775544432 2337789999999
Q ss_pred CCCCceeeeeCC
Q 004048 540 PRGFSHEACTED 551 (776)
Q Consensus 540 PRGwwH~a~A~d 551 (776)
|+|..|.....+
T Consensus 66 ~~~~~h~~~~~~ 77 (278)
T PRK13503 66 RDHDRHLYEHTD 77 (278)
T ss_pred CCCccchhhhcc
Confidence 999999876553
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=71.86 E-value=4.5 Score=30.86 Aligned_cols=37 Identities=32% Similarity=0.345 Sum_probs=32.8
Q ss_pred hhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccc
Q 004048 102 NEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLS 138 (776)
Q Consensus 102 ~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s 138 (776)
|-+.--|.+.+..|+.+|.+.+.+|.+.||-|+-+++
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4455668999999999999999999999999998776
No 50
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=71.84 E-value=27 Score=36.91 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhCC----C-cccceeEEcCCCCCcccccccCCC------eEEEEEeeeEEEEEecCCCCCCCCCCCCC
Q 004048 443 CLANIADGLASLFGQ----P-SVGANMYLTPPNSQGLASHYDDHC------VFVCQLFGTKQWKIFAQPSVQLPRLYNPC 511 (776)
Q Consensus 443 ~LaeL~~aLe~~FG~----P-~v~aNaYlTPpg~qGf~pHyD~~D------VFVlQL~GrKrWrL~~pp~~~lPr~~~pf 511 (776)
.+.+|++.++...|+ | .+-+|.|- +| .+.+.|.|..+ ++.+=+-....+++.....
T Consensus 96 ~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~--~G-~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~---------- 162 (213)
T PRK15401 96 SFLALAQRAAAAAGFPGFQPDACLINRYA--PG-AKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKR---------- 162 (213)
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEecc--Cc-CccccccCCCcccCCCCEEEEeCCCCeEEEecccCC----------
Confidence 577888777666553 2 34677776 33 48999999522 3344444444444443100
Q ss_pred CCCCCcccccccccceEEEEcCCcEeeeC---CCCceeeeeCC
Q 004048 512 DIVNGVEAESSMAECRQFLLREGDILYIP---RGFSHEACTED 551 (776)
Q Consensus 512 ~p~~~~~dd~g~~~~~evvLePGDVLYIP---RGwwH~a~A~d 551 (776)
..+...+.|+.||+|.+- |-|||.+....
T Consensus 163 -----------~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~ 194 (213)
T PRK15401 163 -----------SDPLQRILLEHGDVVVWGGPSRLRYHGILPLK 194 (213)
T ss_pred -----------CCceEEEEeCCCCEEEECchHhheeccCCcCC
Confidence 011367899999999985 56888876553
No 51
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=70.65 E-value=3 Score=36.28 Aligned_cols=18 Identities=22% Similarity=0.857 Sum_probs=14.7
Q ss_pred eEEEEcCCcEeeeCCCCc
Q 004048 527 RQFLLREGDILYIPRGFS 544 (776)
Q Consensus 527 ~evvLePGDVLYIPRGww 544 (776)
...++.|||++|+|+||-
T Consensus 44 ~~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 44 ETVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEEETTEEEEE-TTEE
T ss_pred CEEEEcCCcEEEECCCCE
Confidence 456999999999999983
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=70.03 E-value=9.9 Score=33.30 Aligned_cols=87 Identities=24% Similarity=0.227 Sum_probs=59.7
Q ss_pred HHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccccch-hhhhhhh
Q 004048 70 LLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLSTTS-VGRQKLL 148 (776)
Q Consensus 70 llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s~t~-~~~~~l~ 148 (776)
.|.-+|.+... .+...++-.++..+..+ +.+.....+.+++..|+.+|...+.+|...||.++-.++... ..++.+.
T Consensus 11 ~l~~~l~~~~~-~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 11 ALVSLLSSSDE-NVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 33444555554 56666666666665554 444444456799999999999999999999999999998766 3445555
Q ss_pred cchhHHHHHH
Q 004048 149 ESSALEALLL 158 (776)
Q Consensus 149 ~~~~l~~~~~ 158 (776)
+...++.++.
T Consensus 89 ~~g~l~~l~~ 98 (120)
T cd00020 89 EAGGVPKLVN 98 (120)
T ss_pred HCCChHHHHH
Confidence 5555665553
No 53
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=69.48 E-value=23 Score=35.97 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHHhhhCC----C-cccceeEEcCCCCCcccccccC
Q 004048 440 RFECLANIADGLASLFGQ----P-SVGANMYLTPPNSQGLASHYDD 480 (776)
Q Consensus 440 ~~p~LaeL~~aLe~~FG~----P-~v~aNaYlTPpg~qGf~pHyD~ 480 (776)
+-+.+.+|.+.++...|. | .+=+|-|- +| .+++.|.|.
T Consensus 72 ~P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~--~G-d~mg~H~D~ 114 (169)
T TIGR00568 72 MPQDLGDLCERVATAAGFPDFQPDACLVNRYA--PG-ATLSLHQDR 114 (169)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCEEEEEeec--CC-Ccccccccc
Confidence 447788888888877764 1 24667663 43 789999996
No 54
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=69.01 E-value=2.5 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=19.0
Q ss_pred eEEEEcCCcEeeeCCCCceee
Q 004048 527 RQFLLREGDILYIPRGFSHEA 547 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a 547 (776)
..+.++|||++|||.|.+|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 457999999999999999985
No 55
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=68.90 E-value=4.7 Score=29.62 Aligned_cols=37 Identities=35% Similarity=0.427 Sum_probs=32.3
Q ss_pred hhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccc
Q 004048 102 NEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLS 138 (776)
Q Consensus 102 ~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s 138 (776)
|.+.--+.++++.|+.+|++.+.+|...||.++-+++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5555667889999999999999999999999998876
No 56
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=68.34 E-value=18 Score=42.23 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.1
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
.+..|+|||.+|||+|..|.-...++
T Consensus 424 ~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 424 DIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 56799999999999999999888754
No 57
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=67.92 E-value=22 Score=36.24 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=58.0
Q ss_pred HHHhhhCCCcccceeEEcCCCCCcccccccCC-CeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceE
Q 004048 450 GLASLFGQPSVGANMYLTPPNSQGLASHYDDH-CVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQ 528 (776)
Q Consensus 450 aLe~~FG~P~v~aNaYlTPpg~qGf~pHyD~~-DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~e 528 (776)
.|...+|+...++|+=.-+||+.+...|+-.+ |=|+.-++|+=.-++-. .+
T Consensus 32 ~lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~----------------------------~e 83 (161)
T COG3837 32 RLGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG----------------------------GE 83 (161)
T ss_pred hhhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECC----------------------------ee
Confidence 46677888667999777777788889999985 66888888865444321 45
Q ss_pred EEEcCCcEeeeCCC--CceeeeeCCC
Q 004048 529 FLLREGDILYIPRG--FSHEACTEDD 552 (776)
Q Consensus 529 vvLePGDVLYIPRG--wwH~a~A~de 552 (776)
..|+|||.+=+|.| ..|+-+..++
T Consensus 84 ~~lrpGD~~gFpAG~~~aHhliN~s~ 109 (161)
T COG3837 84 TRLRPGDSAGFPAGVGNAHHLINRSD 109 (161)
T ss_pred EEecCCceeeccCCCcceeEEeecCC
Confidence 69999999999999 9999887654
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=67.74 E-value=6 Score=34.70 Aligned_cols=71 Identities=25% Similarity=0.189 Sum_probs=54.6
Q ss_pred hhHHHHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccc
Q 004048 66 PILSLLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLS 138 (776)
Q Consensus 66 ~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s 138 (776)
.++..|--+|+++.+ .+...++-+++-.+-. -+.+..+.-+.+++..|+..|+..+.+|...||+++-.+.
T Consensus 49 ~~i~~l~~~l~~~~~-~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 49 GGLPALVQLLKSEDE-EVVKAALWALRNLAAG-PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CChHHHHHHHhCCCH-HHHHHHHHHHHHHccC-cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 334445556677777 8888888888877654 3456667778899999999999999999999999886653
No 59
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=66.43 E-value=3.8 Score=46.39 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.2
Q ss_pred eEEEEcCCcEeeeCCCCceeeee
Q 004048 527 RQFLLREGDILYIPRGFSHEACT 549 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A 549 (776)
..+.|+|||.+|||.|.+|.--+
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcC
Confidence 46799999999999999998654
No 60
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=63.54 E-value=27 Score=35.16 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=19.2
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
..+.++|||+|.||+|+.|.....+
T Consensus 115 iri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 115 IRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp EEEEEETTCEEEE-TT--EEEEEST
T ss_pred EEEEEcCCCEEecCCCCceeEEcCC
Confidence 5679999999999999999998754
No 61
>PF12852 Cupin_6: Cupin
Probab=62.42 E-value=21 Score=35.33 Aligned_cols=24 Identities=38% Similarity=0.724 Sum_probs=20.8
Q ss_pred EEEcCCcEeeeCCCCceeeeeCCC
Q 004048 529 FLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 529 vvLePGDVLYIPRGwwH~a~A~de 552 (776)
+.|++||++++|+|..|.-.+..+
T Consensus 57 ~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 57 IRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred EEecCCCEEEEcCCCCeEeCCCCC
Confidence 489999999999999999976543
No 62
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=62.28 E-value=18 Score=35.66 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=45.9
Q ss_pred cCcHHHHHHHHHHHhhhC----C-C-cccceeEEcCCCCCcccccccCCCe------EEEEEeeeEEEEEecCCCCCCCC
Q 004048 439 FRFECLANIADGLASLFG----Q-P-SVGANMYLTPPNSQGLASHYDDHCV------FVCQLFGTKQWKIFAQPSVQLPR 506 (776)
Q Consensus 439 ~~~p~LaeL~~aLe~~FG----~-P-~v~aNaYlTPpg~qGf~pHyD~~DV------FVlQL~GrKrWrL~~pp~~~lPr 506 (776)
.+.+.+.++++.+....+ . | .+-+|.|- + ++ ++++|.|+.+. +.+=+-+.....+.....
T Consensus 72 ~~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~-~-g~-~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~----- 143 (194)
T PF13532_consen 72 PFPEWLSRLLERLVEATGIPPGWRPNQCLINYYR-D-GS-GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD----- 143 (194)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHSS--SEEEEEEES-S-TT--EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG-----
T ss_pred CccHHHHHHHHHHHHHhccccCCCCCEEEEEecC-C-CC-CcCCCCCcccccCCCcEEEEEEccCceEEEeeccC-----
Confidence 334556777777665433 2 2 23455554 3 34 89999999743 334444455565553210
Q ss_pred CCCCCCCCCCcccccccccceEEEEcCCcEeeeC----CCCceeeeeCCC
Q 004048 507 LYNPCDIVNGVEAESSMAECRQFLLREGDILYIP----RGFSHEACTEDD 552 (776)
Q Consensus 507 ~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIP----RGwwH~a~A~de 552 (776)
..+...+.|.+||++++- ..| |.+.....
T Consensus 144 ----------------~~~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~ 176 (194)
T PF13532_consen 144 ----------------DDEPIEVPLPPGSLLVMSGEARYDW-HGIPPVKK 176 (194)
T ss_dssp ----------------TS-EEEEEE-TTEEEEEETTHHHHE-EEE-S-SC
T ss_pred ----------------CCccEEEEcCCCCEEEeChHHhhhe-eEcccccC
Confidence 012478899999999998 345 87776643
No 63
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=61.66 E-value=5.1 Score=44.45 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEcCCcEeeeCCCCceeeee
Q 004048 527 RQFLLREGDILYIPRGFSHEACT 549 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A 549 (776)
..+.|+|||.+|+|.|.+|.-..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred cEEecCCCCEEEecCCCceeecc
Confidence 56799999999999999998654
No 64
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=61.40 E-value=12 Score=38.05 Aligned_cols=76 Identities=24% Similarity=0.181 Sum_probs=45.3
Q ss_pred cccceeEEcCCCCCcccccccCCC----eEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCC
Q 004048 459 SVGANMYLTPPNSQGLASHYDDHC----VFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREG 534 (776)
Q Consensus 459 ~v~aNaYlTPpg~qGf~pHyD~~D----VFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePG 534 (776)
.++.|.+++-+ +.==|.||-... =++.-+.|+=-=-+..- |..+|. .| .+..++|.++
T Consensus 42 ~~q~n~S~s~~-gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDl------R~~SpT---------fg--~~~~~~Ls~~ 103 (176)
T PF00908_consen 42 FVQDNISVSKK-GVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDL------RKGSPT---------FG--KWVSVELSAE 103 (176)
T ss_dssp EEEEEEEEEET-TBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-------BTTSTT---------TT---EEEEEEETT
T ss_pred cCceEEEEccc-cEEEEEEEecCCCCCCcEEEEecCeEEEEEEEC------CCCCCC---------CC--EEEEEEeCcc
Confidence 46899999877 333378886654 24444455322222211 111110 12 2467788888
Q ss_pred c--EeeeCCCCceeeeeCCC
Q 004048 535 D--ILYIPRGFSHEACTEDD 552 (776)
Q Consensus 535 D--VLYIPRGwwH~a~A~de 552 (776)
+ +||||+|++|--.++++
T Consensus 104 n~~~l~IP~G~aHGf~~l~d 123 (176)
T PF00908_consen 104 NPRQLYIPPGVAHGFQTLED 123 (176)
T ss_dssp T--EEEE-TTEEEEEEESSS
T ss_pred ccCEEEeCCcceeeEEeccC
Confidence 7 79999999999999976
No 65
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=61.03 E-value=1.1e+02 Score=32.70 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=24.1
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCCc
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDDG 553 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~deg 553 (776)
..+.+.+||++..|...+|.+.....|
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt~G 167 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVTRG 167 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeeccCc
Confidence 678999999999999999999987554
No 66
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=59.03 E-value=29 Score=33.63 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=39.3
Q ss_pred ccceeEEcCCCCCcccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeee
Q 004048 460 VGANMYLTPPNSQGLASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYI 539 (776)
Q Consensus 460 v~aNaYlTPpg~qGf~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYI 539 (776)
+.+.+|-+.| +.+..+||. +=|.-=|+|+-+-+ + + .| .-++++|||.+|+
T Consensus 45 ~~~GiWe~Tp--G~~r~~y~~-~E~chil~G~v~~T---~-d-------------------~G----e~v~~~aGD~~~~ 94 (116)
T COG3450 45 VETGIWECTP--GKFRVTYDE-DEFCHILEGRVEVT---P-D-------------------GG----EPVEVRAGDSFVF 94 (116)
T ss_pred eeEeEEEecC--ccceEEccc-ceEEEEEeeEEEEE---C-C-------------------CC----eEEEEcCCCEEEE
Confidence 4666788777 357888888 44444466654433 1 1 12 3459999999999
Q ss_pred CCCCceeeee
Q 004048 540 PRGFSHEACT 549 (776)
Q Consensus 540 PRGwwH~a~A 549 (776)
|+||.=.-+-
T Consensus 95 ~~G~~g~W~V 104 (116)
T COG3450 95 PAGFKGTWEV 104 (116)
T ss_pred CCCCeEEEEE
Confidence 9999644433
No 67
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=57.91 E-value=23 Score=39.68 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=36.3
Q ss_pred ccccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 474 LASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 474 f~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
..+|-...-.+-.-++|+-.|++-. -..+.+++||++++|.+.||.=...++
T Consensus 94 ~~~HRht~sAl~~vveG~G~~t~V~---------------------------g~~~~~~~gD~~~tP~w~wH~H~n~~d 145 (335)
T TIGR02272 94 APSHRHTQSALRFIVEGKGAFTAVD---------------------------GERTTMHPGDFIITPSWTWHDHGNPGD 145 (335)
T ss_pred CCccccccceEEEEEEcCceEEEEC---------------------------CEEEeeeCCCEEEeCCCeeEecccCCC
Confidence 4667666666555555665555532 156799999999999999999766543
No 68
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=54.90 E-value=10 Score=33.85 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEcCCcEeeeCCCCceeeeeCCCc
Q 004048 530 LLREGDILYIPRGFSHEACTEDDG 553 (776)
Q Consensus 530 vLePGDVLYIPRGwwH~a~A~deg 553 (776)
+..+||.+|.|+|..|...+.++|
T Consensus 61 ~~~~G~~~~~p~g~~h~~~s~~gc 84 (91)
T PF12973_consen 61 RYGAGDWLRLPPGSSHTPRSDEGC 84 (91)
T ss_dssp EEETTEEEEE-TTEEEEEEESSCE
T ss_pred cCCCCeEEEeCCCCccccCcCCCE
Confidence 568999999999999999986554
No 69
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=53.24 E-value=23 Score=36.06 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=17.9
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
..++-+|||++|||.|=--.-.+.
T Consensus 136 ~tv~a~aGDvifiPKgssIefst~ 159 (176)
T COG4766 136 RTVIAGAGDVIFIPKGSSIEFSTT 159 (176)
T ss_pred CeEecCCCcEEEecCCCeEEEecc
Confidence 445778999999999965554443
No 70
>PLN02288 mannose-6-phosphate isomerase
Probab=52.16 E-value=8.7 Score=43.81 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.0
Q ss_pred eEEEEcCCcEeeeCCCCceeeee
Q 004048 527 RQFLLREGDILYIPRGFSHEACT 549 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A 549 (776)
-.+.|+||+.+|+|+|.+|.-..
T Consensus 251 N~v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 251 NYVKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred ceEecCCCCEEEecCCCCceecC
Confidence 35799999999999999998654
No 71
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=51.71 E-value=49 Score=34.83 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=20.7
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
....++|||++++|+|..|.....+
T Consensus 67 ~~~~~~~g~~i~i~p~~~h~~~~~~ 91 (290)
T PRK10572 67 RAFVCRPGDLLLFPPGEIHHYGRHP 91 (290)
T ss_pred eeEecCCCCEEEECCCCceeeccCC
Confidence 4568999999999999999866543
No 72
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=49.67 E-value=87 Score=32.09 Aligned_cols=76 Identities=24% Similarity=0.186 Sum_probs=46.0
Q ss_pred cccceeEEcCCCCCcccccccC---CCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcC--
Q 004048 459 SVGANMYLTPPNSQGLASHYDD---HCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLRE-- 533 (776)
Q Consensus 459 ~v~aNaYlTPpg~qGf~pHyD~---~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLeP-- 533 (776)
.+++|.++|-+ +.==|.||-. +.=++--+.|+=.=-+... |..+|. .| ....++|.+
T Consensus 43 ~~Q~n~S~S~~-gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDl------R~~SpT---------fG--~~~~~~L~~~~ 104 (176)
T TIGR01221 43 FVQDNHSKSYK-GVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDL------RRNSPT---------FG--KWVGVLLSAEN 104 (176)
T ss_pred cceeEEEEecC-CEEEEEEECCCCCCceEEEEccCCEEEEEEEC------CCCcCC---------CC--eEEEEEECCCC
Confidence 35899999876 3334788863 3334445555543333321 111110 12 235667777
Q ss_pred CcEeeeCCCCceeeeeCCC
Q 004048 534 GDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 534 GDVLYIPRGwwH~a~A~de 552 (776)
+-+||||+|++|--.++++
T Consensus 105 ~~~l~IP~G~aHGF~~L~d 123 (176)
T TIGR01221 105 KRQLWIPEGFAHGFVVLSD 123 (176)
T ss_pred CCEEEeCCcceeEEEEcCC
Confidence 5699999999999999865
No 73
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=49.28 E-value=56 Score=33.63 Aligned_cols=77 Identities=23% Similarity=0.218 Sum_probs=44.6
Q ss_pred cccceeEEcCCCCCcccccccCCC--eEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCC--
Q 004048 459 SVGANMYLTPPNSQGLASHYDDHC--VFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREG-- 534 (776)
Q Consensus 459 ~v~aNaYlTPpg~qGf~pHyD~~D--VFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePG-- 534 (776)
.++.|+++|-+|. -=|.||..-. -++.-+.|+=.=.++.- |..+|. .+ .+..++|.+-
T Consensus 44 ~~Q~n~S~S~~Gv-lRGlHyq~~~q~klv~~v~G~v~dv~vDl------R~~SpT---------yg--~~~~~~ls~~N~ 105 (173)
T COG1898 44 FVQDNHSFSYPGV-LRGLHYQHKPQGKLVRVVSGKVFDVAVDL------RKDSPT---------YG--KWVGVVLSAENK 105 (173)
T ss_pred cccceEEEecCCe-eEEEEcccCCCCeEEEEecCeEEEEEEEc------cCCCCC---------cc--eEEEEEecCCCc
Confidence 3689999998633 3378888765 22333333322111110 111110 11 2345566655
Q ss_pred cEeeeCCCCceeeeeCCCc
Q 004048 535 DILYIPRGFSHEACTEDDG 553 (776)
Q Consensus 535 DVLYIPRGwwH~a~A~deg 553 (776)
-+||||+|++|--.++++.
T Consensus 106 ~~l~IP~G~AHGf~~L~d~ 124 (173)
T COG1898 106 RQLYIPPGFAHGFQVLSDD 124 (173)
T ss_pred eEEEeCCcccceeEEccCc
Confidence 8999999999999999763
No 74
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=46.66 E-value=18 Score=37.14 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=23.2
Q ss_pred ceEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 526 CRQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 526 ~~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
+..+-++.||++.||+|+.|.-++..
T Consensus 115 WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 115 WIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred EEEEEEecCCEEEecCcceeeeecCc
Confidence 57789999999999999999998764
No 75
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=44.83 E-value=57 Score=37.32 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=76.4
Q ss_pred hhhHHHHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhh--hhhHHHHHHHHHhhhcchhhHHHHHhhhhhccccchh
Q 004048 65 IPILSLLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQI--AADAEVVRGLVSLLRNSEKRVLVAAANAVLDLSTTSV 142 (776)
Q Consensus 65 ~~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~--a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s~t~~ 142 (776)
-++|..|+.||+|... +|-+.+|=-+.-.- --..||| --|+.++--||++|.+.+-+.-.-||=||.+.++--.
T Consensus 326 ~G~L~a~~~lLs~~ke-~irKEaCWTiSNIT---AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 326 CGALKAFRSLLSSPKE-NIRKEACWTISNIT---AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred cccHHHHHHHhcChhh-hhhhhhheeecccc---cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4568888999999887 78777775432111 1122343 3478889999999999999999999999999988766
Q ss_pred hhhhhhcchhHHHHHHHHHHHhccccccccccCCCCCccccccccccchhhHHHHHHHh
Q 004048 143 GRQKLLESSALEALLLIFLQVHRSSTLVSLCAGENGNEASLCIACEEDEFLVLLLDAAI 201 (776)
Q Consensus 143 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 201 (776)
+|--. +-++++| |++. .-|.--.+-.||+.-..+|+.=
T Consensus 402 ~~PD~--------iryLv~q-----G~Ik--------pLc~~L~~~dNkiiev~LD~~e 439 (526)
T COG5064 402 NRPDI--------IRYLVSQ-----GFIK--------PLCDLLDVVDNKIIEVALDAIE 439 (526)
T ss_pred CCchH--------HHHHHHc-----cchh--------HHHHHHhccCccchhhhHHHHH
Confidence 66422 2255554 3333 2344455667777777788764
No 76
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=41.84 E-value=45 Score=33.56 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=31.6
Q ss_pred CCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceeeee
Q 004048 481 HCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEACT 549 (776)
Q Consensus 481 ~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a~A 549 (776)
|+|+ +-+.|+-.-++..+.. .+..+..||+|.||.|+-|.-..
T Consensus 65 HEVl-~vlrgqA~l~iGG~~G-------------------------~el~v~~GDvlliPAGvGH~rl~ 107 (163)
T COG4297 65 HEVL-GVLRGQAGLQIGGADG-------------------------QELEVGEGDVLLIPAGVGHCRLH 107 (163)
T ss_pred ceEE-EEecceeEEEecCCCC-------------------------ceeeecCCCEEEEecCccccccc
Confidence 4554 4578888888876421 44577899999999999998654
No 77
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=41.80 E-value=62 Score=37.77 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=99.5
Q ss_pred CCchHHHHHHHHHhccCCCchHHHHHHHHhhhhccccCCCCCCC-chhhHHHHHHHhhcCCCCCccchhHHHhhhhhhhh
Q 004048 20 NTNSIFAILVAALSNSNNNYSEFIIKKCLNRLRLSLLSQSQPTL-PIPILSLLPVLLNSKCSGGIAGLSAEIVGAASLLS 98 (776)
Q Consensus 20 ~~~~~f~~l~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~-~~~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s 98 (776)
.++.+++.++-.+...+... +...-++|.++-.... ....+ +..++.-|=.++..+++ .+=+|..|++.-.+-.|
T Consensus 116 ~~~~l~~~i~~~L~~~d~~V-a~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSV-AKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSD-IVRCRVYELLVEIASHS 191 (503)
T ss_pred cCccHHHHHHHHHcCCcHHH-HHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCH-HHHHHHHHHHHHHHhcC
Confidence 56788998888885553333 3334444544431111 11111 33335555555655455 78889999999888888
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccccchhhhhhhhcchhHHHHHHHHHHH
Q 004048 99 LETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLSTTSVGRQKLLESSALEALLLIFLQV 163 (776)
Q Consensus 99 ~e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s~t~~~~~~l~~~~~l~~~~~~~~~~ 163 (776)
-|+=+.+.. +|++.-|+..|.+.+--|-..|+..+-+|..|.-|.+-|.+..+++++..+....
T Consensus 192 ~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 192 PEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc
Confidence 777765554 7899999999999777788899999999999999999999999999998776665
No 78
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=41.38 E-value=72 Score=33.67 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=20.7
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
.+.++.|||++++|++.+|.....+
T Consensus 89 ~~~~l~~G~~~l~~~~~p~~~~~~~ 113 (302)
T PRK09685 89 RQVQLAAGDITLIDASRPCSIYPQG 113 (302)
T ss_pred eEEEEcCCCEEEEECCCCcEeecCC
Confidence 4568999999999999999876644
No 79
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=40.97 E-value=22 Score=33.49 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=21.8
Q ss_pred EEcCCcEeeeCCC-CceeeeeCCCccCCCccceeEEE
Q 004048 530 LLREGDILYIPRG-FSHEACTEDDGRTGLAEFSLHLT 565 (776)
Q Consensus 530 vLePGDVLYIPRG-wwH~a~A~deg~~~~~~~SLHLT 565 (776)
.|+|||+||+||+ ++|++.-.+++ .-+|++
T Consensus 6 ~~~~GD~I~~~r~~y~H~gIYvG~~------~ViH~~ 36 (125)
T PF04970_consen 6 RLKPGDHIEVPRGLYEHWGIYVGDG------EVIHFS 36 (125)
T ss_dssp S--TT-EEEEEETTEEEEEEEEETT------EEEEEE
T ss_pred CCCCCCEEEEecCCccEEEEEecCC------eEEEec
Confidence 6789999999965 78999988765 467776
No 80
>PRK11171 hypothetical protein; Provisional
Probab=39.17 E-value=85 Score=33.74 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=23.3
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
....|++||++|+|++..|.-.+.++
T Consensus 223 ~~~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 223 DWVEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred EEEEeCCCCEEEECCCCCEEEECCCC
Confidence 66799999999999999999998754
No 81
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=38.20 E-value=17 Score=36.03 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=14.8
Q ss_pred eEEEEcCCcEeeeCCCC
Q 004048 527 RQFLLREGDILYIPRGF 543 (776)
Q Consensus 527 ~evvLePGDVLYIPRGw 543 (776)
.++.|+|||++|||+.+
T Consensus 148 ~n~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 148 ANVELKPGDVLIIPESW 164 (165)
T ss_pred CCceeCCCCEEEEeccc
Confidence 45689999999999876
No 82
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.05 E-value=18 Score=43.38 Aligned_cols=51 Identities=6% Similarity=-0.047 Sum_probs=30.4
Q ss_pred HHHHhHhhhccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 004048 197 LDAAIVLINSCDIEQLLRIPRKLYESLFVFLKELWIKVRDQLLSGNIMRSN 247 (776)
Q Consensus 197 ~~~~~~~~n~~~v~~l~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~ 247 (776)
+|..+.|---|+.--=+++-.+|++..+=.+-+.|.-.-.+-+-.|-.-++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~ 334 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYI 334 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCccc
Confidence 455555555666544566777888877777766666555444444544433
No 83
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=38.05 E-value=1.4e+02 Score=29.36 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=21.9
Q ss_pred eEEEEcCCcEeeeCCC---CceeeeeCCCc
Q 004048 527 RQFLLREGDILYIPRG---FSHEACTEDDG 553 (776)
Q Consensus 527 ~evvLePGDVLYIPRG---wwH~a~A~deg 553 (776)
..+.-++|++++.|.+ .+|.+.....|
T Consensus 139 ~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G 168 (178)
T smart00702 139 ATVKPKKGDLLFFPSGRGRSLHGVCPVTRG 168 (178)
T ss_pred eEEeCCCCcEEEEeCCCCCccccCCcceeC
Confidence 4667789999999986 89999877543
No 84
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=37.75 E-value=34 Score=39.04 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=29.4
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCCccCCCccceeEEEee
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTLG 567 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~deg~~~~~~~SLHLT~S 567 (776)
..+.++|||++|+|+-|.|..++-+.. .+++-+||-+-
T Consensus 361 l~v~~~~~~~~~l~~~~~~~~~~~~~s---sg~~~v~l~~~ 398 (437)
T KOG2508|consen 361 LVVDLEPGDMLYLPASWFHEVTSSSAS---SGGSDVHIAFN 398 (437)
T ss_pred EEEecccCceeeechhheeeeeccccc---cCCcceeEEee
Confidence 678999999999999999999986542 23455776543
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=34.31 E-value=90 Score=24.82 Aligned_cols=46 Identities=26% Similarity=0.198 Sum_probs=32.4
Q ss_pred hHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhh
Q 004048 87 SAEIVGAASLLSLETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAV 134 (776)
Q Consensus 87 s~e~~g~a~l~s~e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~v 134 (776)
++-.+|-.+-...+ ..-..=.+++..|+.+|...+..|-.+||.|+
T Consensus 7 A~~aLg~l~~~~~~--~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 7 AAWALGRLAEGCPE--LLQPYLPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHCTTTTTHH--HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred HHHHHhhHhcccHH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45556653322222 22235568999999999999999999999886
No 86
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=33.28 E-value=1.5e+02 Score=27.83 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCCc
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDDG 553 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~deg 553 (776)
.++.+.|||++.++++-.+.....+++
T Consensus 73 ~~~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 73 REVELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEEcCCeEEEEcCCCCEEEEECCCc
Confidence 567999999999999999988776543
No 87
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=32.81 E-value=35 Score=31.18 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=17.7
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
..+++.+||+.|||||=.-.-....+
T Consensus 51 ~~f~v~~G~~F~VP~gN~Y~i~N~~~ 76 (85)
T PF11699_consen 51 TSFVVTKGGSFQVPRGNYYSIKNIGN 76 (85)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred cEEEEeCCCEEEECCCCEEEEEECCC
Confidence 56799999999999998777666543
No 88
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=32.49 E-value=64 Score=44.15 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccccchhhhhhh
Q 004048 68 LSLLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLSTTSVGRQKL 147 (776)
Q Consensus 68 ~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s~t~~~~~~l 147 (776)
+..|--+|.|... .+=..++..+|..+-.+= -|.+.-.|++.+.-|+.+|++++.++-+-||-++.+++..+-..+.+
T Consensus 448 Ip~LV~LL~s~s~-~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 448 VQLLISLLGLSSE-QQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3344445665444 677778888887766443 35556669999999999999999999999999999999976655554
Q ss_pred h-cchhHHHHHHHH
Q 004048 148 L-ESSALEALLLIF 160 (776)
Q Consensus 148 ~-~~~~l~~~~~~~ 160 (776)
. ..-+++.++.+.
T Consensus 526 V~~aGAIppLV~LL 539 (2102)
T PLN03200 526 VESAGAVPALLWLL 539 (2102)
T ss_pred HHHCCCHHHHHHHH
Confidence 4 557788776543
No 89
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=32.45 E-value=60 Score=39.95 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=53.8
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccccchhhhhhhhcchhHHHHHHHHH
Q 004048 99 LETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLSTTSVGRQKLLESSALEALLLIFL 161 (776)
Q Consensus 99 ~e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s~t~~~~~~l~~~~~l~~~~~~~~ 161 (776)
+.-|-.--...+++..|+++|.+.+.++...|...+++||.-+-.|.++...-.+|++..+..
T Consensus 320 ~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~ 382 (708)
T PF05804_consen 320 FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK 382 (708)
T ss_pred CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC
Confidence 333444445668999999999999999999999999999999999999999999999885543
No 90
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=32.06 E-value=53 Score=34.25 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeCCCCceee
Q 004048 481 HCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIPRGFSHEA 547 (776)
Q Consensus 481 ~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIPRGwwH~a 547 (776)
|.--++|..|-|.|+|-.. +..|..+.+|.. +|=.=|-|++|||.-
T Consensus 134 Y~~pvv~a~gy~lW~l~~~--v~~~p~~~pW~~-------------------~~~~~~~~~rw~~~~ 179 (191)
T COG3065 134 YKFPVVQATGYKLWHLTRE--VEVPPTIGPWDY-------------------GGRGGWWPPRWWGWY 179 (191)
T ss_pred ccceEEeeeeEEEEEEeEE--EEcCCcccCcCC-------------------CCccccCCCCCCCcc
Confidence 4567999999999999752 333333455432 334446778888855
No 91
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=30.77 E-value=55 Score=44.71 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=70.4
Q ss_pred HhhcCCCCCccchhHHHhhhhhhhhhhhhh-hhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhccccchhhhhhhhcchh
Q 004048 74 LLNSKCSGGIAGLSAEIVGAASLLSLETNE-QIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDLSTTSVGRQKLLESSA 152 (776)
Q Consensus 74 ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e-~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s~t~~~~~~l~~~~~ 152 (776)
||++... ++.+.+|-.++.++- +...+. .-.-+.++++.|+.+|.+.+.+|.+.|..|+-.+..-.-|++.+....+
T Consensus 659 LLss~~~-~v~keAA~AL~nL~~-~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~ 736 (2102)
T PLN03200 659 LLTNNTE-AVATQSARALAALSR-SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDI 736 (2102)
T ss_pred HHhcCCh-HHHHHHHHHHHHHHh-CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc
Confidence 5666666 899999999998886 444443 3347889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHH
Q 004048 153 LEALLLIF 160 (776)
Q Consensus 153 l~~~~~~~ 160 (776)
++.++.+-
T Consensus 737 I~~Lv~lL 744 (2102)
T PLN03200 737 ILPLTRVL 744 (2102)
T ss_pred HHHHHHHH
Confidence 88877443
No 92
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=29.51 E-value=2.1e+02 Score=30.09 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=54.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCc-----ccceeEEcCCCCCcccccccCCC------eEEEEEeeeEEEEEecCCCCCCCCC
Q 004048 439 FRFECLANIADGLASLFGQPS-----VGANMYLTPPNSQGLASHYDDHC------VFVCQLFGTKQWKIFAQPSVQLPRL 507 (776)
Q Consensus 439 ~~~p~LaeL~~aLe~~FG~P~-----v~aNaYlTPpg~qGf~pHyD~~D------VFVlQL~GrKrWrL~~pp~~~lPr~ 507 (776)
..+|++.++-..+....|.|. +-+|.|- +| .+++.|-|.-. |..+=+-.....++..... .
T Consensus 82 ~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~--pG-d~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r-~---- 153 (194)
T COG3145 82 KPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYR--PG-ASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR-R---- 153 (194)
T ss_pred CCCCccHHHHHHHHHHhcCCCCChhheeEEecc--CC-CccccccccccccCCCceEEEecCCCeEEEeccccC-C----
Confidence 345777777777776677643 3457665 43 78999999732 3444444555555544210 0
Q ss_pred CCCCCCCCCcccccccccceEEEEcCCcEeee---CCCCceeeee
Q 004048 508 YNPCDIVNGVEAESSMAECRQFLLREGDILYI---PRGFSHEACT 549 (776)
Q Consensus 508 ~~pf~p~~~~~dd~g~~~~~evvLePGDVLYI---PRGwwH~a~A 549 (776)
.+...+.|++||++.+ +|-.||+...
T Consensus 154 ----------------~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p 182 (194)
T COG3145 154 ----------------GPGLRLRLEHGDVVVMGGPSRLAWHHIIP 182 (194)
T ss_pred ----------------CCceeEEecCCCEEEecCCcccccccccc
Confidence 0236789999999986 5778885553
No 93
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=29.13 E-value=1.9e+02 Score=30.25 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.8
Q ss_pred EEcCCcEeeeCCCCceeeeeCCC
Q 004048 530 LLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 530 vLePGDVLYIPRGwwH~a~A~de 552 (776)
+..+||++.+|.|.-|..++.++
T Consensus 164 ~y~~Gd~i~~p~~~~H~p~a~~~ 186 (215)
T TIGR02451 164 VYGVGDFEEADGSVQHQPRTVSG 186 (215)
T ss_pred ccCCCeEEECCCCCCcCcccCCC
Confidence 66799999999999999999854
No 94
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=29.03 E-value=3.7e+02 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=20.9
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
..+.-++||++.+|.-.+|.+....
T Consensus 162 ~~v~P~~G~lvlFPS~L~H~v~p~~ 186 (201)
T TIGR02466 162 VYVPPQEGRVLLFESWLRHEVPPNE 186 (201)
T ss_pred EEECCCCCeEEEECCCCceecCCCC
Confidence 3445589999999999999998864
No 95
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=29.01 E-value=1.9e+02 Score=30.15 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.7
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
..+.+++||+|-||+|+-|+-....
T Consensus 118 ~~i~c~~gDLI~vP~gi~HwFtlt~ 142 (181)
T COG1791 118 YQIRCEKGDLISVPPGIYHWFTLTE 142 (181)
T ss_pred EEEEEccCCEEecCCCceEEEEccC
Confidence 5678889999999999999997653
No 96
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=28.99 E-value=28 Score=39.17 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=18.6
Q ss_pred eEEEEcCCcEeeeCCCCceeeee
Q 004048 527 RQFLLREGDILYIPRGFSHEACT 549 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A 549 (776)
--++|+||+.+|+|+|.+|.-..
T Consensus 250 N~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 250 NYVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEEecCCceEEecCCCcccccc
Confidence 35699999999999999998877
No 97
>PF13993 YccJ: YccJ-like protein
Probab=27.03 E-value=44 Score=29.41 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHhhcccCccccCchhhh-HHhhhccC
Q 004048 258 TVNSLAESIFRLSLNADQLTTISKGRI-ERSIFSLN 292 (776)
Q Consensus 258 ~~~~~~~~i~~l~~~~~~~~~~~~~~v-~~~lf~~~ 292 (776)
+..+||++||-|.= .||+ +++|+..+
T Consensus 14 TS~EIAeAIFElA~---------~dE~lAekIWeeG 40 (69)
T PF13993_consen 14 TSIEIAEAIFELAN---------NDEVLAEKIWEEG 40 (69)
T ss_pred CCHHHHHHHHHHhc---------ccHHHHHHHHHcc
Confidence 44999999998853 3444 77886543
No 98
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=26.63 E-value=2.5e+02 Score=30.70 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=21.5
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTE 550 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~ 550 (776)
..++++|||+++.=...||.....
T Consensus 209 v~~~lkaGd~~~f~~~t~HgS~~N 232 (288)
T TIGR01762 209 VPMQMKAGQFIIFWSTLMHASYPN 232 (288)
T ss_pred eeeeeCCceEEEECCCceecCCCC
Confidence 568999999999999999998765
No 99
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=26.38 E-value=27 Score=33.50 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=13.9
Q ss_pred EEcCCcEeeeCCCCce
Q 004048 530 LLREGDILYIPRGFSH 545 (776)
Q Consensus 530 vLePGDVLYIPRGwwH 545 (776)
+.+|||+=|+|||..-
T Consensus 64 vve~GDv~YWpPGkAl 79 (126)
T COG2164 64 VVEPGDVSYWPPGKAL 79 (126)
T ss_pred ccCcccccccCCCcEE
Confidence 7789999999999754
No 100
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=26.35 E-value=1.1e+02 Score=31.70 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=34.8
Q ss_pred cccccCCCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccccccccceEEEEcCCcEeeeC-CCCceeeeeC
Q 004048 475 ASHYDDHCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAESSMAECRQFLLREGDILYIP-RGFSHEACTE 550 (776)
Q Consensus 475 ~pHyD~~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd~g~~~~~evvLePGDVLYIP-RGwwH~a~A~ 550 (776)
|.|-|..|...+-+.|++--. .. ... .+.+ .+........++|||.|.+- +-.||.+...
T Consensus 117 GiH~DG~d~v~~~li~r~Ni~-GG-~s~----i~~~----------~~~~~~~~~l~~p~d~l~~~D~~~~H~vtpI 177 (195)
T PF10014_consen 117 GIHRDGVDFVFIHLINRHNIE-GG-ESQ----IYDN----------DKEILFFFTLLEPGDTLLVDDRRVWHYVTPI 177 (195)
T ss_dssp SSB--SSSEEEEEEEEEESEE-E---EE----EEET----------TSSEEEEE---STTEEEEEETTTEEEEE--E
T ss_pred CccCCCCCEEEEEEEcCCCcc-Cc-eEE----EEeC----------CCCcceEEEecCCCCEEEEeCCcceECCCce
Confidence 689999999988888886441 11 110 0110 11122356789999999999 9999999886
No 101
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=25.62 E-value=19 Score=29.27 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.2
Q ss_pred cCCCeEEEEEeeeEEEEEe
Q 004048 479 DDHCVFVCQLFGTKQWKIF 497 (776)
Q Consensus 479 D~~DVFVlQL~GrKrWrL~ 497 (776)
++-++|.+||.|+++|.+.
T Consensus 6 ~D~E~ftL~VrGRe~yE~l 24 (42)
T PF07710_consen 6 DDEEVFTLQVRGRERYEML 24 (42)
T ss_dssp SCCCEEEEEEESHHHHHHH
T ss_pred CCCCEEEEEEecHHHHHHH
Confidence 7789999999999987654
No 102
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=24.68 E-value=3.3e+02 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.5
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTED 551 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~d 551 (776)
....|++|+-+|+|+|--|..+...
T Consensus 101 ~th~l~eggyaylPpgs~~~~~N~~ 125 (264)
T COG3257 101 KTHALREGGYAYLPPGSGWTLRNAQ 125 (264)
T ss_pred eEEEeccCCeEEeCCCCcceEeecc
Confidence 4568999999999999999998653
No 103
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.59 E-value=1.7e+02 Score=34.88 Aligned_cols=114 Identities=28% Similarity=0.242 Sum_probs=80.0
Q ss_pred HHHHHHHhhhhccccCCCCCCCchhhHHHHHHH---hhcCCCCCccchhHHHhhhhhhhhhhhhhhh--hhhHHHHHHHH
Q 004048 42 FIIKKCLNRLRLSLLSQSQPTLPIPILSLLPVL---LNSKCSGGIAGLSAEIVGAASLLSLETNEQI--AADAEVVRGLV 116 (776)
Q Consensus 42 ~~~~~~l~~~~~~~~~~s~~~~~~~~~~llp~l---l~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~--a~d~~~~~~l~ 116 (776)
+-+--+||.+-+...+ ++ -.-.+-.+||+| |-|+-. +|. +++.=|.|-.+=..||.| ..|++++.-|+
T Consensus 213 Rn~tW~LsNlcrgk~P-~P--~~~~v~~iLp~L~~ll~~~D~-~Vl---~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV 285 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKNP-SP--PFDVVAPILPALLRLLHSTDE-EVL---TDACWALSYLTDGSNEKIQMVIDAGVVPRLV 285 (514)
T ss_pred HHHHHHHHHHHcCCCC-CC--cHHHHHHHHHHHHHHHhcCCH-HHH---HHHHHHHHHHhcCChHHHHHHHHccchHHHH
Confidence 3345578888776663 32 223344455554 555555 555 555566666677778865 57999999999
Q ss_pred HhhhcchhhHHHHHhhhhhccccchhhhh-hhhcchhHHHHHHHHHH
Q 004048 117 SLLRNSEKRVLVAAANAVLDLSTTSVGRQ-KLLESSALEALLLIFLQ 162 (776)
Q Consensus 117 ~~l~~~~~~v~~~a~n~vld~s~t~~~~~-~l~~~~~l~~~~~~~~~ 162 (776)
.+|+..+-+|...|=-+|=+.-|-+-=++ -+....+||.++.++..
T Consensus 286 ~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 286 DLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred HHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence 99999999999999999988766555554 46788899998866654
No 104
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=23.46 E-value=67 Score=33.92 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.7
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCC
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDD 552 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~de 552 (776)
....|+||.-+-+|||.||.-.+.+.
T Consensus 153 ~~lkL~PGesitL~Pg~~HsFwae~g 178 (225)
T COG3822 153 SQLKLSPGESITLPPGLYHSFWAEEG 178 (225)
T ss_pred eeEEECCCCcEecCCCceeeeeecCC
Confidence 67799999999999999999999764
No 105
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.43 E-value=4.4e+02 Score=31.69 Aligned_cols=139 Identities=19% Similarity=0.304 Sum_probs=85.2
Q ss_pred hhhHHHHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhh--hhhHHHHHHHHHhhhcchhhHHHHHhhhhhccccchh
Q 004048 65 IPILSLLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQI--AADAEVVRGLVSLLRNSEKRVLVAAANAVLDLSTTSV 142 (776)
Q Consensus 65 ~~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~--a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~s~t~~ 142 (776)
.+.|.-|+-||+++-.-.|-+.+|=+++=..--.- ||| --|.+++--|+++|++++-+.=.-||=||-+++++.-
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~---~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ---EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH---HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 35577777788854442577777776653222111 222 2477999999999999999999999999999887654
Q ss_pred hhhhhhcchhHHHH-HHHHHHH--hccccccccccCCCCCccccccccccchhhHHHHHH------------------Hh
Q 004048 143 GRQKLLESSALEAL-LLIFLQV--HRSSTLVSLCAGENGNEASLCIACEEDEFLVLLLDA------------------AI 201 (776)
Q Consensus 143 ~~~~l~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------~~ 201 (776)
+++ -|++.|= .-.+.+. .|...+++-.++|+ .-
T Consensus 397 -----------~~qi~yLv~~giI~plcdlL---------------~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~ 450 (514)
T KOG0166|consen 397 -----------PEQIKYLVEQGIIKPLCDLL---------------TCPDVKIILVALDGLENILKVGEAEKNRGTNPLA 450 (514)
T ss_pred -----------HHHHHHHHHcCCchhhhhcc---------------cCCChHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 222 2555443 2222222 12222333333333 23
Q ss_pred Hhhhccc-hhhhhcch----HHHHHHHHHHHHHHHH
Q 004048 202 VLINSCD-IEQLLRIP----RKLYESLFVFLKELWI 232 (776)
Q Consensus 202 ~~~n~~~-v~~l~~~~----~~~~~~~~~~l~~~w~ 232 (776)
.+|+-|. .|+++++| ++++.+++..+.+-|-
T Consensus 451 ~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 451 IMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 5677777 67777666 4777777777777664
No 106
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=22.79 E-value=6.9e+02 Score=28.38 Aligned_cols=89 Identities=17% Similarity=0.302 Sum_probs=55.8
Q ss_pred CCCchHHHHHHHHhhhhccccCCCCCCCchhhHHHHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhhhhhHHHHHHH
Q 004048 36 NNNYSEFIIKKCLNRLRLSLLSQSQPTLPIPILSLLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQIAADAEVVRGL 115 (776)
Q Consensus 36 ~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~a~d~~~~~~l 115 (776)
.+|+...+-=|+|+.+. + +.+--.++..+-.+|+++.+ -|=+.| +++...+... +.++.-++ ++..|
T Consensus 91 ~n~~~~~lAL~~l~~i~------~-~~~~~~l~~~v~~ll~~~~~-~VRk~A--~~~l~~i~~~--~p~~~~~~-~~~~l 157 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR------T-PEMAEPLIPDVIKLLSDPSP-YVRKKA--ALALLKIYRK--DPDLVEDE-LIPKL 157 (526)
T ss_dssp SSHHHHHHHHHHHHHH-------S-HHHHHHHHHHHHHHHHSSSH-HHHHHH--HHHHHHHHHH--CHCCHHGG-HHHHH
T ss_pred CCHHHHHHHHhhhhhhc------c-cchhhHHHHHHHHHhcCCch-HHHHHH--HHHHHHHhcc--CHHHHHHH-HHHHH
Confidence 34444444445555555 2 12333345555566776655 333333 4444444444 55566666 89999
Q ss_pred HHhhhcchhhHHHHHhhhhhcc
Q 004048 116 VSLLRNSEKRVLVAAANAVLDL 137 (776)
Q Consensus 116 ~~~l~~~~~~v~~~a~n~vld~ 137 (776)
..+|...+..|..+|++++..+
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH
Confidence 9999999999999999999998
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=22.56 E-value=2e+02 Score=24.33 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=54.5
Q ss_pred HHHHHHHhccCCCchHHHHHHHHhhhhccccCCCCCCCchhhHHHHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhh
Q 004048 26 AILVAALSNSNNNYSEFIIKKCLNRLRLSLLSQSQPTLPIPILSLLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQI 105 (776)
Q Consensus 26 ~~l~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~ 105 (776)
+.|+..+.++.+++...-.-++|.++. + |..+-.|+. ++.++.. .|...++..+|-.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~------~----~~~~~~L~~-~l~d~~~-~vr~~a~~aL~~i----------- 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG------D----PEAIPALIE-LLKDEDP-MVRRAAARALGRI----------- 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT------H----HHHHHHHHH-HHTSSSH-HHHHHHHHHHHCC-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC------C----HhHHHHHHH-HHcCCCH-HHHHHHHHHHHHh-----------
Confidence 567778877777777666777787665 1 122223333 3466666 7888888888854
Q ss_pred hhhHHHHHHHHHhhhcchhhHHHHHh
Q 004048 106 AADAEVVRGLVSLLRNSEKRVLVAAA 131 (776)
Q Consensus 106 a~d~~~~~~l~~~l~~~~~~v~~~a~ 131 (776)
.|.+.+..|..++.+.+..+.-.+|
T Consensus 59 -~~~~~~~~L~~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 59 -GDPEAIPALIKLLQDDDDEVVREAA 83 (88)
T ss_dssp -HHHHTHHHHHHHHTC-SSHHHHHHH
T ss_pred -CCHHHHHHHHHHHcCCCcHHHHHHH
Confidence 2677899999999998776654444
No 108
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=22.33 E-value=84 Score=27.75 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=18.6
Q ss_pred EEcCCcEeeeCC-CCceeeeeC
Q 004048 530 LLREGDILYIPR-GFSHEACTE 550 (776)
Q Consensus 530 vLePGDVLYIPR-GwwH~a~A~ 550 (776)
+.++|+++.+|. ..||.+...
T Consensus 65 ~p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 65 VPKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp E-BTTEEEEEESCTCEEEEEEE
T ss_pred cCCCCEEEEEeCCCCeecCccc
Confidence 489999999999 999999988
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=21.89 E-value=1.3e+02 Score=25.55 Aligned_cols=55 Identities=29% Similarity=0.424 Sum_probs=41.9
Q ss_pred HHHHHhhcCCCCCccchhHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhhhcc
Q 004048 70 LLPVLLNSKCSGGIAGLSAEIVGAASLLSLETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAVLDL 137 (776)
Q Consensus 70 llp~ll~s~~~~~~a~~s~e~~g~a~l~s~e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~vld~ 137 (776)
|+-.|.+++.. .|=..+++++| ++ -|.+.+..|+.+|+..+-.|-.+|+.++=.+
T Consensus 4 L~~~l~~~~~~-~vr~~a~~~L~-----------~~-~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 4 LLQLLQNDPDP-QVRAEAARALG-----------EL-GDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHTSSSH-HHHHHHHHHHH-----------CC-THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCH-HHHHHHHHHHH-----------Hc-CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33444455555 67677778777 22 2558899999999999999999999998776
No 110
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=21.72 E-value=87 Score=33.64 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=39.8
Q ss_pred CCcccccccC--CCeEEEEEeeeEEEEEecCCCCCCCCCCCCCCCCCCcccc--cccccceEEEEcCCcEeeeCCCCcee
Q 004048 471 SQGLASHYDD--HCVFVCQLFGTKQWKIFAQPSVQLPRLYNPCDIVNGVEAE--SSMAECRQFLLREGDILYIPRGFSHE 546 (776)
Q Consensus 471 ~qGf~pHyD~--~DVFVlQL~GrKrWrL~~pp~~~lPr~~~pf~p~~~~~dd--~g~~~~~evvLePGDVLYIPRGwwH~ 546 (776)
+|-.+.||-. .+-+|--.-|.=.-+||......-.... .++....+. ...++-..++|.||+-+-||||.||.
T Consensus 97 ~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~---~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~yH~ 173 (225)
T PF07385_consen 97 GQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDAD---TDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIYHW 173 (225)
T ss_dssp T-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-S---S-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEEEE
T ss_pred CCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccC---CCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCeee
Confidence 4666666654 4567777777777788863211111000 111111111 11123378899999999999999999
Q ss_pred eeeCCC
Q 004048 547 ACTEDD 552 (776)
Q Consensus 547 a~A~de 552 (776)
-.+.+.
T Consensus 174 Fw~e~g 179 (225)
T PF07385_consen 174 FWGEGG 179 (225)
T ss_dssp EEE-TT
T ss_pred EEecCC
Confidence 998753
No 111
>PF05536 Neurochondrin: Neurochondrin
Probab=21.53 E-value=5.7e+02 Score=30.65 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=68.7
Q ss_pred HHHHHhhcCCCCCccch--hHHHhhhhhhhhhhhhhhhhhhHHHHH---HHHHhhhcchh-hHHHHHhhhhhccccchhh
Q 004048 70 LLPVLLNSKCSGGIAGL--SAEIVGAASLLSLETNEQIAADAEVVR---GLVSLLRNSEK-RVLVAAANAVLDLSTTSVG 143 (776)
Q Consensus 70 llp~ll~s~~~~~~a~~--s~e~~g~a~l~s~e~~e~~a~d~~~~~---~l~~~l~~~~~-~v~~~a~n~vld~s~t~~~ 143 (776)
.|-=||++... +..+. +---+|.+=|.+|=.-+++|+|++++. -|...+.+++. -+..-|.-...-++++.-|
T Consensus 54 Fl~RLL~t~~~-~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G 132 (543)
T PF05536_consen 54 FLDRLLRTGSV-PSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG 132 (543)
T ss_pred HHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh
Confidence 44555666444 33332 233456666777777999999998876 46777777777 7788888888889999999
Q ss_pred hhhhhcchhHHHHHHHHHH
Q 004048 144 RQKLLESSALEALLLIFLQ 162 (776)
Q Consensus 144 ~~~l~~~~~l~~~~~~~~~ 162 (776)
++.|.+..+++.+...+..
T Consensus 133 ~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 133 AKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHhcCCHHHHHHHHHh
Confidence 9999999999988876665
No 112
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.79 E-value=51 Score=34.64 Aligned_cols=15 Identities=20% Similarity=0.612 Sum_probs=13.0
Q ss_pred EEcCCcEeeeCCCCc
Q 004048 530 LLREGDILYIPRGFS 544 (776)
Q Consensus 530 vLePGDVLYIPRGww 544 (776)
.|+|||++|+|..|.
T Consensus 225 ~l~~gDii~V~~s~~ 239 (239)
T TIGR03028 225 LVQPDDVIYVRESLF 239 (239)
T ss_pred ccCCCCEEEEeCccC
Confidence 489999999998873
No 113
>PRK09687 putative lyase; Provisional
Probab=20.37 E-value=3e+02 Score=29.90 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=54.8
Q ss_pred CCchHHHHHHHHHhccCCCchHHHHHHHHhhhhccccCCCCCCCchhhHHHHHHHhhcCCCCCccchhHHHhhhhhhhhh
Q 004048 20 NTNSIFAILVAALSNSNNNYSEFIIKKCLNRLRLSLLSQSQPTLPIPILSLLPVLLNSKCSGGIAGLSAEIVGAASLLSL 99 (776)
Q Consensus 20 ~~~~~f~~l~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~llp~ll~s~~~~~~a~~s~e~~g~a~l~s~ 99 (776)
.+..+|+++... .++.+|.....-=+.|.++. .+..+.+-.+-.|..+++..+.. .|=+-+++++|-..-
T Consensus 51 ~~~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg-----~~~~~~~~a~~~L~~l~~~D~d~-~VR~~A~~aLG~~~~--- 120 (280)
T PRK09687 51 GGQDVFRLAIEL-CSSKNPIERDIGADILSQLG-----MAKRCQDNVFNILNNLALEDKSA-CVRASAINATGHRCK--- 120 (280)
T ss_pred CcchHHHHHHHH-HhCCCHHHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHhcCCCH-HHHHHHHHHHhcccc---
Confidence 345566665553 44444555555556666665 11111223333444455666665 666677777775321
Q ss_pred hhhhhhhhhHHHHHHHHHhhhcchhhHHHHHhhhh
Q 004048 100 ETNEQIAADAEVVRGLVSLLRNSEKRVLVAAANAV 134 (776)
Q Consensus 100 e~~e~~a~d~~~~~~l~~~l~~~~~~v~~~a~n~v 134 (776)
....-+...+..|+.++...+.+|=.+|..|.
T Consensus 121 ---~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 121 ---KNPLYSPKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred ---cccccchHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 11122455666677777776777766666665
No 114
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=20.09 E-value=1e+02 Score=33.02 Aligned_cols=38 Identities=8% Similarity=0.153 Sum_probs=30.2
Q ss_pred eEEEEcCCcEeeeCCCCceeeeeCCCccCCCccceeEEEee
Q 004048 527 RQFLLREGDILYIPRGFSHEACTEDDGRTGLAEFSLHLTLG 567 (776)
Q Consensus 527 ~evvLePGDVLYIPRGwwH~a~A~deg~~~~~~~SLHLT~S 567 (776)
..+.++|||++++-.-.||.+.+... .....++|++|.
T Consensus 211 v~~~~~aGDvl~f~~~~~H~S~~N~s---~~~R~~l~l~y~ 248 (277)
T TIGR02408 211 STFTGKAGSAVWFDCNTMHGSGSNIT---PWPRSNVFMVFN 248 (277)
T ss_pred eeeccCCceEEEEccccccCCCCCCC---CCcceeEEEEEe
Confidence 45688999999999999999977532 234578999885
Done!