Query 004051
Match_columns 776
No_of_seqs 407 out of 1507
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 2E-43 4.4E-48 411.9 25.7 554 39-703 24-625 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 1.3E-26 2.9E-31 217.8 12.2 107 202-310 3-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1.7E-26 3.7E-31 213.7 12.5 104 203-306 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 2.2E-26 4.8E-31 212.6 11.5 102 204-305 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 6.2E-26 1.3E-30 206.2 10.5 95 206-302 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 1.3E-25 2.8E-30 204.1 10.5 99 205-303 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2E-25 4.4E-30 202.6 10.5 96 206-303 2-97 (97)
8 cd05498 Bromo_Brdt_II_like Bro 99.9 2.9E-25 6.3E-30 203.0 10.3 98 206-303 2-102 (102)
9 cd05504 Bromo_Acf1_like Bromod 99.9 4.7E-25 1E-29 206.3 11.9 103 202-306 10-112 (115)
10 cd05507 Bromo_brd8_like Bromod 99.9 6.6E-25 1.4E-29 201.8 11.6 101 203-305 2-102 (104)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 5.6E-25 1.2E-29 201.3 10.7 98 206-303 2-102 (102)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.2E-24 2.6E-29 199.6 11.6 101 202-302 2-102 (103)
13 cd05502 Bromo_tif1_like Bromod 99.9 2.4E-24 5.1E-29 199.6 12.5 101 203-306 3-106 (109)
14 cd05501 Bromo_SP100C_like Brom 99.9 2.4E-24 5.2E-29 197.0 12.2 97 205-306 3-99 (102)
15 cd05510 Bromo_SPT7_like Bromod 99.9 2.5E-24 5.3E-29 200.5 11.5 102 203-306 6-109 (112)
16 cd05509 Bromo_gcn5_like Bromod 99.9 3.2E-24 6.9E-29 195.8 11.1 99 205-305 2-100 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 3.2E-24 7E-29 195.6 11.0 97 203-302 2-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 5.8E-24 1.3E-28 196.5 10.0 99 205-305 2-106 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 1.2E-23 2.7E-28 191.5 10.2 92 205-298 2-93 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.9 2.7E-23 5.8E-28 193.6 11.5 102 203-306 2-107 (112)
21 cd05512 Bromo_brd1_like Bromod 99.9 2.2E-23 4.7E-28 189.9 10.1 92 205-298 2-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 4.4E-23 9.6E-28 192.1 11.1 102 207-310 3-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 9.5E-23 2E-27 187.1 9.9 97 205-303 1-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 1.3E-22 2.7E-27 187.0 10.0 97 206-304 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 2.1E-22 4.6E-27 187.9 10.8 101 205-307 3-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 8.9E-22 1.9E-26 187.5 12.6 105 199-304 19-126 (128)
27 smart00297 BROMO bromo domain. 99.9 8.1E-22 1.8E-26 180.2 11.3 102 202-305 5-106 (107)
28 cd05517 Bromo_polybromo_II Bro 99.9 4.1E-22 8.9E-27 183.0 9.2 94 206-301 2-101 (103)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 8.5E-22 1.8E-26 181.9 10.2 96 205-302 3-104 (106)
30 cd05520 Bromo_polybromo_III Br 99.9 8.4E-22 1.8E-26 181.0 9.9 91 210-302 6-102 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 9E-22 2E-26 180.8 9.7 94 207-302 3-102 (103)
32 PF00439 Bromodomain: Bromodom 99.8 1.5E-20 3.2E-25 164.6 9.3 84 209-294 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.8 1.9E-20 4.1E-25 166.1 9.6 96 206-303 2-99 (99)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.9E-20 4.2E-25 172.3 10.0 94 207-302 4-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 2.7E-20 6E-25 171.8 10.6 95 205-303 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.5E-19 3.2E-24 167.6 11.5 98 210-307 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 2.8E-17 6.2E-22 152.3 10.8 100 204-307 3-108 (110)
38 COG5076 Transcription factor i 99.7 9E-17 1.9E-21 178.1 9.0 105 203-309 141-251 (371)
39 KOG1245 Chromatin remodeling c 99.6 1.7E-16 3.6E-21 197.3 7.8 95 209-306 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.4 5.9E-13 1.3E-17 155.1 6.1 101 204-306 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.3 1.3E-12 2.8E-17 122.5 4.4 81 204-284 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.0 3E-10 6.4E-15 137.8 8.1 104 201-306 562-665 (1051)
43 KOG0386 Chromatin remodeling c 98.9 2E-09 4.4E-14 127.8 7.2 100 207-308 1027-1132(1157)
44 cd05491 Bromo_TBP7_like Bromod 98.9 1.7E-09 3.6E-14 101.4 4.1 41 245-285 63-103 (119)
45 KOG0008 Transcription initiati 98.7 1.1E-08 2.3E-13 124.2 6.2 94 210-305 1388-1481(1563)
46 KOG1827 Chromatin remodeling c 98.7 1.8E-08 3.8E-13 116.7 7.5 99 203-303 51-155 (629)
47 KOG0008 Transcription initiati 98.6 6E-08 1.3E-12 117.9 8.2 101 206-308 1263-1363(1563)
48 KOG1474 Transcription initiati 98.5 3.8E-08 8.3E-13 116.6 1.7 91 215-305 3-93 (640)
49 KOG1472 Histone acetyltransfer 98.4 2.1E-07 4.6E-12 109.4 4.9 67 218-286 300-366 (720)
50 KOG1828 IRF-2-binding protein 97.9 2.6E-05 5.5E-10 85.7 8.0 85 210-297 214-298 (418)
51 KOG1828 IRF-2-binding protein 97.9 2.9E-06 6.2E-11 92.9 -0.1 95 207-303 22-116 (418)
52 COG5076 Transcription factor i 97.5 1.8E-05 3.9E-10 88.4 -0.5 192 33-306 171-363 (371)
53 KOG1029 Endocytic adaptor prot 95.8 0.029 6.4E-07 66.5 8.5 75 609-686 329-409 (1118)
54 PF11600 CAF-1_p150: Chromatin 95.1 0.35 7.5E-06 50.6 13.0 8 743-750 206-213 (216)
55 PLN03086 PRLI-interacting fact 95.0 0.052 1.1E-06 63.9 7.3 74 627-701 5-82 (567)
56 cd05493 Bromo_ALL-1 Bromodomai 94.9 0.045 9.7E-07 53.0 5.4 60 246-305 59-118 (131)
57 PF09726 Macoilin: Transmembra 93.6 1.8 4E-05 52.7 16.6 44 593-636 428-474 (697)
58 PF13904 DUF4207: Domain of un 93.5 2 4.3E-05 46.4 14.9 21 641-661 111-131 (264)
59 PTZ00266 NIMA-related protein 92.5 0.52 1.1E-05 59.3 9.9 32 260-299 206-237 (1021)
60 KOG1029 Endocytic adaptor prot 91.9 0.56 1.2E-05 56.3 8.6 65 617-681 348-419 (1118)
61 PTZ00266 NIMA-related protein 91.8 0.66 1.4E-05 58.5 9.7 7 739-745 602-608 (1021)
62 KOG0163 Myosin class VI heavy 90.1 1.2 2.6E-05 53.5 9.0 21 405-425 770-790 (1259)
63 KOG0644 Uncharacterized conser 87.6 0.38 8.3E-06 58.1 2.9 60 243-302 1050-1109(1113)
64 PTZ00121 MAEBL; Provisional 87.4 2.4 5.1E-05 54.4 9.4 15 599-613 1121-1135(2084)
65 KOG0163 Myosin class VI heavy 86.7 3.1 6.6E-05 50.3 9.5 13 292-304 478-490 (1259)
66 KOG1144 Translation initiation 85.6 2.6 5.7E-05 51.0 8.3 8 609-616 216-223 (1064)
67 KOG0732 AAA+-type ATPase conta 83.8 0.58 1.3E-05 58.6 2.0 64 222-285 533-601 (1080)
68 cd05497 Bromo_Brdt_I_like Brom 83.0 0.17 3.6E-06 47.3 -2.3 55 38-97 36-90 (107)
69 KOG4364 Chromatin assembly fac 80.5 18 0.00039 43.5 12.2 7 681-687 360-366 (811)
70 cd05518 Bromo_polybromo_IV Bro 78.4 0.28 6.1E-06 45.5 -2.5 54 39-97 36-89 (103)
71 KOG3116 Predicted C3H1-type Zn 77.1 3 6.5E-05 41.2 4.0 9 533-541 144-152 (177)
72 KOG2072 Translation initiation 76.7 15 0.00032 45.2 10.3 72 611-688 568-644 (988)
73 TIGR03825 FliH_bacil flagellar 76.2 11 0.00023 40.5 8.3 83 599-681 4-92 (255)
74 KOG2891 Surface glycoprotein [ 75.7 7.4 0.00016 42.1 6.8 19 628-646 330-348 (445)
75 PLN03086 PRLI-interacting fact 75.4 6.1 0.00013 47.1 6.7 63 610-675 7-70 (567)
76 cd05495 Bromo_cbp_like Bromodo 75.0 0.46 1E-05 44.4 -2.1 55 38-97 35-89 (108)
77 PTZ00121 MAEBL; Provisional 74.0 14 0.0003 47.9 9.4 6 605-610 1142-1147(2084)
78 KOG1363 Predicted regulator of 73.7 6.7 0.00015 45.7 6.4 14 667-680 351-364 (460)
79 PF07888 CALCOCO1: Calcium bin 73.2 15 0.00034 43.5 9.2 103 597-705 334-451 (546)
80 cd05513 Bromo_brd7_like Bromod 72.2 0.34 7.4E-06 44.6 -3.6 55 38-97 30-84 (98)
81 PF10252 PP28: Casein kinase s 71.5 28 0.0006 31.5 8.3 40 619-658 17-58 (82)
82 KOG1150 Predicted molecular ch 71.4 46 0.001 34.9 11.0 9 621-629 149-157 (250)
83 cd05511 Bromo_TFIID Bromodomai 71.3 0.94 2E-05 42.6 -1.0 79 38-127 29-107 (112)
84 KOG2072 Translation initiation 70.8 19 0.00041 44.4 9.2 26 638-663 794-819 (988)
85 PRK09510 tolA cell envelope in 70.8 22 0.00048 40.6 9.5 8 641-648 107-114 (387)
86 TIGR02794 tolA_full TolA prote 69.6 25 0.00053 39.7 9.5 12 650-661 143-154 (346)
87 KOG2002 TPR-containing nuclear 69.1 21 0.00046 44.7 9.4 43 237-286 261-304 (1018)
88 PRK06569 F0F1 ATP synthase sub 68.8 38 0.00082 34.1 9.6 97 606-705 36-134 (155)
89 cd05508 Bromo_RACK7 Bromodomai 68.5 0.51 1.1E-05 43.5 -3.3 55 38-97 31-85 (99)
90 PF05672 MAP7: MAP7 (E-MAP-115 68.2 30 0.00065 35.3 8.8 24 625-648 43-66 (171)
91 cd05501 Bromo_SP100C_like Brom 67.7 0.75 1.6E-05 42.9 -2.4 52 37-93 28-79 (102)
92 cd05496 Bromo_WDR9_II Bromodom 67.6 0.89 1.9E-05 43.4 -2.0 50 38-92 34-83 (119)
93 cd05507 Bromo_brd8_like Bromod 67.1 0.71 1.5E-05 42.8 -2.7 55 38-97 32-86 (104)
94 cd05524 Bromo_polybromo_I Brom 66.9 0.9 1.9E-05 42.9 -2.1 55 38-97 37-91 (113)
95 cd05509 Bromo_gcn5_like Bromod 66.9 0.73 1.6E-05 42.2 -2.6 53 38-95 30-82 (101)
96 PLN02316 synthase/transferase 66.8 13 0.00029 47.4 7.3 15 398-412 100-114 (1036)
97 PHA03308 transcriptional regul 66.6 5.1 0.00011 48.1 3.5 13 405-417 1192-1204(1463)
98 cd05520 Bromo_polybromo_III Br 66.5 0.6 1.3E-05 43.3 -3.3 55 38-97 35-89 (103)
99 cd05504 Bromo_Acf1_like Bromod 65.2 0.91 2E-05 43.0 -2.4 55 38-97 41-95 (115)
100 KOG3375 Phosphoprotein/predict 64.6 24 0.00053 35.0 7.1 57 627-683 108-169 (174)
101 KOG1144 Translation initiation 64.2 27 0.00059 42.9 8.7 8 700-707 339-346 (1064)
102 KOG3054 Uncharacterized conser 64.1 38 0.00083 36.3 8.9 16 678-693 172-187 (299)
103 PRK00409 recombination and DNA 62.4 46 0.00099 41.5 10.8 43 605-649 501-543 (782)
104 cd05512 Bromo_brd1_like Bromod 62.1 0.73 1.6E-05 42.4 -3.6 55 38-97 30-84 (98)
105 COG4942 Membrane-bound metallo 62.0 68 0.0015 37.1 11.1 14 624-637 201-214 (420)
106 PRK06568 F0F1 ATP synthase sub 61.5 79 0.0017 31.7 10.3 28 608-636 32-59 (154)
107 TIGR01069 mutS2 MutS2 family p 61.5 37 0.0008 42.2 9.7 50 638-687 541-590 (771)
108 cd05517 Bromo_polybromo_II Bro 61.2 0.89 1.9E-05 42.2 -3.2 55 38-97 35-89 (103)
109 cd05505 Bromo_WSTF_like Bromod 60.9 0.85 1.8E-05 41.9 -3.4 55 38-97 29-83 (97)
110 cd05529 Bromo_WDR9_I_like Brom 60.3 0.88 1.9E-05 43.9 -3.5 55 38-97 57-111 (128)
111 PHA03308 transcriptional regul 59.0 6.4 0.00014 47.3 2.5 12 621-632 1351-1362(1463)
112 cd05515 Bromo_polybromo_V Brom 58.7 1 2.2E-05 41.9 -3.3 55 38-97 35-89 (105)
113 cd05528 Bromo_AAA Bromodomain; 58.1 0.57 1.2E-05 44.2 -5.1 51 38-93 32-82 (112)
114 PF03154 Atrophin-1: Atrophin- 57.9 6 0.00013 49.2 2.1 48 625-681 578-625 (982)
115 PF06936 Selenoprotein_S: Sele 57.7 53 0.0011 34.1 8.6 23 617-639 68-90 (190)
116 PF13904 DUF4207: Domain of un 57.7 1.7E+02 0.0037 31.7 12.9 20 665-684 195-214 (264)
117 cd05499 Bromo_BDF1_2_II Bromod 56.5 1.2 2.7E-05 40.9 -3.1 55 38-97 34-88 (102)
118 PF05262 Borrelia_P83: Borreli 55.9 57 0.0012 38.5 9.4 10 413-422 83-92 (489)
119 cd05521 Bromo_Rsc1_2_I Bromodo 55.7 1.3 2.9E-05 41.3 -3.0 53 38-97 36-88 (106)
120 PF05672 MAP7: MAP7 (E-MAP-115 55.2 87 0.0019 32.0 9.4 21 626-646 36-56 (171)
121 PRK01558 V-type ATP synthase s 55.0 92 0.002 32.2 9.9 62 629-690 22-84 (198)
122 KOG2002 TPR-containing nuclear 54.9 47 0.001 41.9 8.8 21 637-660 841-861 (1018)
123 KOG2133 Transcriptional corepr 54.7 7.7 0.00017 48.1 2.3 78 597-683 784-861 (1229)
124 KOG4661 Hsp27-ERE-TATA-binding 53.9 55 0.0012 38.9 8.7 8 414-421 422-429 (940)
125 CHL00019 atpF ATP synthase CF0 53.6 1.3E+02 0.0028 30.5 10.7 15 603-617 47-61 (184)
126 cd05516 Bromo_SNF2L2 Bromodoma 53.5 1.7 3.6E-05 40.6 -2.8 55 38-97 36-90 (107)
127 PF07946 DUF1682: Protein of u 52.7 51 0.0011 36.6 8.1 8 396-403 110-117 (321)
128 PF15236 CCDC66: Coiled-coil d 52.1 84 0.0018 31.7 8.7 17 625-641 69-85 (157)
129 PF06785 UPF0242: Uncharacteri 51.2 82 0.0018 35.3 9.1 63 629-694 130-192 (401)
130 PF06936 Selenoprotein_S: Sele 51.0 84 0.0018 32.6 8.8 44 644-687 77-124 (190)
131 KOG4661 Hsp27-ERE-TATA-binding 50.8 72 0.0016 38.0 9.0 11 638-648 627-637 (940)
132 PRK06231 F0F1 ATP synthase sub 50.1 1E+02 0.0023 32.1 9.5 11 606-616 74-84 (205)
133 PF06785 UPF0242: Uncharacteri 50.1 2E+02 0.0043 32.5 11.7 41 592-642 62-102 (401)
134 PRK11546 zraP zinc resistance 50.0 1.1E+02 0.0023 30.6 8.9 57 578-634 33-98 (143)
135 KOG2357 Uncharacterized conser 50.0 45 0.00098 38.3 7.1 21 617-637 361-381 (440)
136 TIGR01069 mutS2 MutS2 family p 49.9 1.4E+02 0.003 37.4 12.0 8 606-613 497-504 (771)
137 PRK00409 recombination and DNA 49.4 86 0.0019 39.2 10.2 11 675-685 609-619 (782)
138 PF00836 Stathmin: Stathmin fa 49.2 22 0.00049 35.1 4.1 39 645-683 47-85 (140)
139 KOG1827 Chromatin remodeling c 48.5 2.6 5.7E-05 50.4 -2.8 75 223-299 214-288 (629)
140 cd05525 Bromo_ASH1 Bromodomain 48.5 1.8 3.9E-05 40.4 -3.4 56 37-97 36-91 (106)
141 PF12544 LAM_C: Lysine-2,3-ami 48.4 5.2 0.00011 38.6 -0.3 45 31-85 4-49 (127)
142 PRK06800 fliH flagellar assemb 48.3 1.3E+02 0.0028 31.2 9.3 21 664-684 78-98 (228)
143 smart00297 BROMO bromo domain. 47.6 2.3 5E-05 38.7 -2.8 49 39-92 37-85 (107)
144 CHL00118 atpG ATP synthase CF0 47.6 2E+02 0.0043 28.4 10.7 9 608-616 50-58 (156)
145 PRK05759 F0F1 ATP synthase sub 47.5 2E+02 0.0043 28.1 10.6 10 607-616 31-40 (156)
146 KOG0644 Uncharacterized conser 47.4 5.3 0.00011 48.9 -0.6 68 228-298 89-186 (1113)
147 PRK06568 F0F1 ATP synthase sub 47.2 1.6E+02 0.0036 29.5 9.9 26 624-649 54-79 (154)
148 KOG0982 Centrosomal protein Nu 46.9 96 0.0021 35.9 9.0 27 223-249 66-93 (502)
149 KOG3054 Uncharacterized conser 46.5 87 0.0019 33.8 8.1 9 663-671 149-157 (299)
150 cd05498 Bromo_Brdt_II_like Bro 45.9 2.1 4.5E-05 39.3 -3.4 52 38-94 34-85 (102)
151 PRK07352 F0F1 ATP synthase sub 45.3 2.1E+02 0.0045 28.8 10.6 13 605-617 44-56 (174)
152 PRK00247 putative inner membra 45.2 1.2E+02 0.0026 35.4 9.7 16 360-375 80-95 (429)
153 KOG2129 Uncharacterized conser 45.0 1.1E+02 0.0024 35.3 9.1 80 626-706 257-338 (552)
154 PRK09174 F0F1 ATP synthase sub 45.0 1.8E+02 0.0039 30.4 10.3 29 606-635 79-107 (204)
155 TIGR01932 hflC HflC protein. H 44.5 1.5E+02 0.0033 32.8 10.2 12 590-601 204-215 (317)
156 PRK13454 F0F1 ATP synthase sub 44.3 2.1E+02 0.0045 29.2 10.5 11 606-616 57-67 (181)
157 cd05510 Bromo_SPT7_like Bromod 44.0 3.3 7.1E-05 39.1 -2.5 50 38-92 37-86 (112)
158 PF07218 RAP1: Rhoptry-associa 44.0 1.4E+02 0.003 35.8 9.9 23 636-658 238-260 (782)
159 KOG2130 Phosphatidylserine-spe 43.7 15 0.00032 40.7 2.1 20 259-278 156-175 (407)
160 cd05503 Bromo_BAZ2A_B_like Bro 43.3 2.5 5.4E-05 38.6 -3.3 54 39-97 30-83 (97)
161 cd05519 Bromo_SNF2 Bromodomain 42.6 2.6 5.6E-05 38.9 -3.3 55 38-97 35-89 (103)
162 PF09727 CortBP2: Cortactin-bi 42.4 1.5E+02 0.0034 30.8 9.1 58 630-688 85-155 (192)
163 PF15346 ARGLU: Arginine and g 42.1 1.8E+02 0.004 29.1 9.2 30 628-657 75-105 (149)
164 cd05500 Bromo_BDF1_2_I Bromodo 42.1 2.7 5.9E-05 38.8 -3.3 52 38-94 35-86 (103)
165 PRK14474 F0F1 ATP synthase sub 41.8 2.1E+02 0.0047 30.7 10.6 9 608-616 33-41 (250)
166 PF07946 DUF1682: Protein of u 41.3 1E+02 0.0022 34.3 8.3 7 603-609 242-248 (321)
167 PRK13455 F0F1 ATP synthase sub 41.2 2.4E+02 0.0052 28.6 10.4 11 607-617 54-64 (184)
168 PF15437 PGBA_C: Plasminogen-b 41.0 1.3E+02 0.0029 27.2 7.1 13 672-684 71-83 (86)
169 PRK14471 F0F1 ATP synthase sub 40.9 2.3E+02 0.0049 28.2 9.9 7 608-614 36-42 (164)
170 PRK08476 F0F1 ATP synthase sub 40.4 3.4E+02 0.0073 26.5 10.8 19 666-684 96-114 (141)
171 KOG2140 Uncharacterized conser 40.4 19 0.00041 42.4 2.4 7 76-82 38-44 (739)
172 KOG0742 AAA+-type ATPase [Post 40.2 5E+02 0.011 30.6 13.3 28 589-616 73-108 (630)
173 PRK08475 F0F1 ATP synthase sub 40.0 2.9E+02 0.0062 27.8 10.6 6 609-614 51-56 (167)
174 TIGR03321 alt_F1F0_F0_B altern 39.7 2.4E+02 0.0053 30.0 10.6 7 608-614 33-39 (246)
175 PRK14471 F0F1 ATP synthase sub 39.6 2.3E+02 0.0049 28.1 9.7 11 672-682 114-124 (164)
176 PF09726 Macoilin: Transmembra 39.5 83 0.0018 38.8 7.8 21 633-653 506-527 (697)
177 PRK14472 F0F1 ATP synthase sub 39.5 2.6E+02 0.0057 28.1 10.3 10 607-616 45-54 (175)
178 PRK13460 F0F1 ATP synthase sub 39.0 2.4E+02 0.0053 28.3 9.9 9 608-616 44-52 (173)
179 PF06098 Radial_spoke_3: Radia 39.0 2E+02 0.0044 31.8 9.9 13 579-591 120-132 (291)
180 KOG2130 Phosphatidylserine-spe 38.8 21 0.00047 39.5 2.4 9 298-306 163-171 (407)
181 PRK14472 F0F1 ATP synthase sub 38.7 2.5E+02 0.0054 28.2 9.9 14 674-687 135-148 (175)
182 PRK09173 F0F1 ATP synthase sub 38.7 3E+02 0.0066 27.1 10.4 9 608-616 30-38 (159)
183 PRK13453 F0F1 ATP synthase sub 38.5 2.5E+02 0.0055 28.3 9.9 10 607-616 45-54 (173)
184 KOG2656 DNA methyltransferase 38.4 68 0.0015 36.6 6.2 63 600-662 173-247 (445)
185 PF14372 DUF4413: Domain of un 38.2 86 0.0019 28.9 6.0 51 258-308 3-53 (101)
186 CHL00118 atpG ATP synthase CF0 37.8 2.8E+02 0.006 27.4 9.9 10 604-613 58-67 (156)
187 KOG4220 Muscarinic acetylcholi 37.5 5.2E+02 0.011 30.4 12.9 17 669-685 407-423 (503)
188 PF09802 Sec66: Preprotein tra 37.5 5E+02 0.011 27.1 12.9 38 586-623 65-110 (190)
189 PRK08476 F0F1 ATP synthase sub 36.9 3E+02 0.0066 26.8 9.9 9 608-616 35-43 (141)
190 KOG1420 Ca2+-activated K+ chan 36.6 24 0.00053 41.8 2.5 11 638-648 91-101 (1103)
191 PF05110 AF-4: AF-4 proto-onco 36.2 32 0.00068 44.7 3.7 19 498-516 442-461 (1191)
192 PTZ00491 major vault protein; 35.9 60 0.0013 40.6 5.8 32 678-710 772-803 (850)
193 PF15236 CCDC66: Coiled-coil d 35.8 3E+02 0.0065 27.9 9.7 8 638-645 92-99 (157)
194 cd03405 Band_7_HflC Band_7_Hfl 35.0 2.5E+02 0.0053 29.3 9.6 9 696-704 230-238 (242)
195 TIGR01933 hflK HflK protein. H 34.9 2.1E+02 0.0045 30.4 9.2 8 698-705 229-236 (261)
196 PRK07353 F0F1 ATP synthase sub 34.4 4.2E+02 0.0091 25.3 10.7 7 608-614 33-39 (140)
197 PRK13460 F0F1 ATP synthase sub 34.2 4.1E+02 0.0089 26.7 10.7 11 603-613 51-61 (173)
198 PF05262 Borrelia_P83: Borreli 34.0 1.1E+02 0.0023 36.3 7.2 7 699-705 335-341 (489)
199 cd05506 Bromo_plant1 Bromodoma 33.4 4.4 9.4E-05 36.9 -3.3 55 38-97 31-85 (99)
200 PRK01005 V-type ATP synthase s 33.3 3E+02 0.0064 29.0 9.7 8 694-701 107-114 (207)
201 KOG2412 Nuclear-export-signal 33.1 1.4E+02 0.003 35.6 7.8 15 672-686 261-275 (591)
202 PRK13428 F0F1 ATP synthase sub 33.1 2.9E+02 0.0063 32.3 10.6 10 607-616 28-37 (445)
203 PRK02292 V-type ATP synthase s 33.0 2.9E+02 0.0062 28.0 9.4 8 639-646 26-33 (188)
204 PF06637 PV-1: PV-1 protein (P 32.8 2.7E+02 0.006 31.9 9.7 38 605-652 292-334 (442)
205 PRK06669 fliH flagellar assemb 32.6 4.1E+02 0.0089 28.8 11.1 47 601-652 76-122 (281)
206 COG3074 Uncharacterized protei 32.4 3.2E+02 0.0069 24.2 7.9 55 627-686 23-77 (79)
207 PRK13454 F0F1 ATP synthase sub 31.9 3.7E+02 0.0081 27.3 10.0 16 669-684 134-149 (181)
208 PRK06231 F0F1 ATP synthase sub 31.9 3.4E+02 0.0075 28.3 9.9 11 603-613 83-93 (205)
209 COG3064 TolA Membrane protein 31.5 2.2E+02 0.0048 31.9 8.5 49 602-654 170-218 (387)
210 PRK13461 F0F1 ATP synthase sub 31.4 3.5E+02 0.0075 26.7 9.5 7 608-614 33-39 (159)
211 COG5269 ZUO1 Ribosome-associat 31.3 3.2E+02 0.007 30.1 9.6 82 620-706 226-316 (379)
212 PRK14473 F0F1 ATP synthase sub 31.3 4.9E+02 0.011 25.8 10.6 9 608-616 36-44 (164)
213 PF09831 DUF2058: Uncharacteri 31.1 1.2E+02 0.0027 31.1 6.3 29 664-692 59-87 (177)
214 PF12052 VGCC_beta4Aa_N: Volta 30.9 50 0.0011 26.1 2.6 16 673-688 24-39 (42)
215 PRK11029 FtsH protease regulat 30.8 3.4E+02 0.0073 30.6 10.2 10 591-600 215-224 (334)
216 PRK10930 FtsH protease regulat 30.8 3.8E+02 0.0083 31.2 10.9 9 679-687 325-333 (419)
217 TIGR03321 alt_F1F0_F0_B altern 30.6 3.5E+02 0.0075 28.8 9.9 10 604-613 41-50 (246)
218 KOG3654 Uncharacterized CH dom 30.5 1.1E+02 0.0025 35.9 6.5 8 697-704 458-465 (708)
219 TIGR01216 ATP_synt_epsi ATP sy 30.4 98 0.0021 29.8 5.3 23 618-640 83-105 (130)
220 PRK14474 F0F1 ATP synthase sub 30.2 3.5E+02 0.0077 29.0 9.9 16 672-687 120-135 (250)
221 cd05502 Bromo_tif1_like Bromod 29.6 8.2 0.00018 36.0 -2.2 54 38-96 32-88 (109)
222 cd05522 Bromo_Rsc1_2_II Bromod 29.3 5.5 0.00012 37.0 -3.4 55 38-97 36-90 (104)
223 PF06548 Kinesin-related: Kine 28.9 3E+02 0.0065 32.3 9.4 62 627-688 397-470 (488)
224 KOG2412 Nuclear-export-signal 28.8 2.5E+02 0.0053 33.7 8.8 8 606-613 175-182 (591)
225 COG4942 Membrane-bound metallo 28.7 2.3E+02 0.005 33.0 8.5 10 740-749 319-328 (420)
226 PRK14475 F0F1 ATP synthase sub 28.4 6.1E+02 0.013 25.3 10.9 11 606-616 36-46 (167)
227 PRK03963 V-type ATP synthase s 28.2 3.8E+02 0.0082 27.3 9.4 21 630-650 33-53 (198)
228 cd05492 Bromo_ZMYND11 Bromodom 27.6 9.2 0.0002 36.1 -2.3 72 39-121 36-107 (109)
229 KOG2117 Uncharacterized conser 27.6 1.2E+02 0.0026 34.5 5.9 25 629-653 81-109 (379)
230 KOG3634 Troponin [Cytoskeleton 27.6 1.8E+02 0.0038 32.8 7.1 22 623-644 90-111 (361)
231 PTZ00436 60S ribosomal protein 27.5 3.5E+02 0.0075 30.2 9.1 44 638-681 145-191 (357)
232 PF06658 DUF1168: Protein of u 27.4 4.4E+02 0.0095 26.3 9.2 16 628-643 46-61 (142)
233 KOG0577 Serine/threonine prote 26.6 1.3E+03 0.029 28.6 21.5 24 635-658 537-560 (948)
234 TIGR03545 conserved hypothetic 26.4 4.2E+02 0.009 32.0 10.5 77 598-690 178-261 (555)
235 PF15186 TEX13: Testis-express 26.1 4.1E+02 0.0089 26.7 8.6 52 634-686 75-130 (152)
236 KOG2357 Uncharacterized conser 26.0 3.3E+02 0.0071 31.6 9.0 11 394-404 207-217 (440)
237 CHL00019 atpF ATP synthase CF0 25.6 5.4E+02 0.012 26.1 9.9 11 603-613 59-69 (184)
238 PF00769 ERM: Ezrin/radixin/mo 25.2 4.5E+02 0.0099 28.2 9.7 23 638-660 45-67 (246)
239 PRK07352 F0F1 ATP synthase sub 25.1 5.6E+02 0.012 25.7 9.8 12 602-613 53-64 (174)
240 cd04369 Bromodomain Bromodomai 25.1 10 0.00022 33.0 -2.4 51 37-92 30-80 (99)
241 KOG2689 Predicted ubiquitin re 25.1 3.1E+02 0.0067 30.2 8.2 9 587-595 82-90 (290)
242 PRK14473 F0F1 ATP synthase sub 25.1 6E+02 0.013 25.1 9.9 9 605-613 45-53 (164)
243 PF10376 Mei5: Double-strand r 25.0 3.5E+02 0.0075 28.8 8.6 33 664-696 169-201 (221)
244 PLN03188 kinesin-12 family pro 24.9 3E+02 0.0065 36.2 9.2 63 627-689 1167-1241(1320)
245 PF09731 Mitofilin: Mitochondr 24.5 2.5E+02 0.0055 33.5 8.4 12 675-686 339-350 (582)
246 TIGR02606 antidote_CC2985 puta 24.4 95 0.0021 26.9 3.5 27 250-276 12-38 (69)
247 TIGR01932 hflC HflC protein. H 24.3 4E+02 0.0087 29.5 9.4 11 641-651 226-236 (317)
248 PRK05759 F0F1 ATP synthase sub 24.3 6.5E+02 0.014 24.4 9.9 7 606-612 42-48 (156)
249 PF15290 Syntaphilin: Golgi-lo 23.7 9.1E+02 0.02 26.8 11.4 7 477-483 5-11 (305)
250 cd03404 Band_7_HflK Band_7_Hfl 23.5 8.7E+02 0.019 25.7 11.5 8 592-599 175-182 (266)
251 PRK12472 hypothetical protein; 23.3 4E+02 0.0086 31.7 9.1 84 605-689 209-309 (508)
252 PRK13461 F0F1 ATP synthase sub 23.3 5.1E+02 0.011 25.5 9.0 9 604-612 41-49 (159)
253 PRK09173 F0F1 ATP synthase sub 23.2 6.9E+02 0.015 24.5 9.9 12 672-683 108-119 (159)
254 COG4372 Uncharacterized protei 23.0 1.5E+02 0.0033 33.9 5.7 36 644-684 78-113 (499)
255 PF01237 Oxysterol_BP: Oxyster 23.0 1.3E+02 0.0028 33.7 5.3 35 606-643 284-318 (354)
256 KOG2548 SWAP mRNA splicing reg 23.0 2.6E+02 0.0056 33.3 7.6 120 391-515 192-396 (653)
257 PRK13453 F0F1 ATP synthase sub 22.9 6.7E+02 0.015 25.2 9.9 9 605-613 55-63 (173)
258 PRK01885 greB transcription el 22.9 1.5E+02 0.0033 29.7 5.2 25 625-652 13-37 (157)
259 PF02841 GBP_C: Guanylate-bind 22.8 2.3E+02 0.0049 31.0 7.0 35 624-658 213-247 (297)
260 PRK14475 F0F1 ATP synthase sub 22.8 4.5E+02 0.0098 26.2 8.6 11 672-682 116-126 (167)
261 PRK13428 F0F1 ATP synthase sub 22.7 4.8E+02 0.01 30.5 9.9 18 672-689 116-133 (445)
262 PF15346 ARGLU: Arginine and g 22.6 4.7E+02 0.01 26.3 8.4 24 635-658 74-98 (149)
263 KOG4403 Cell surface glycoprot 22.1 2.7E+02 0.0059 32.4 7.4 41 654-695 291-331 (575)
264 KOG0288 WD40 repeat protein Ti 21.9 5E+02 0.011 30.2 9.4 33 669-701 84-119 (459)
265 PF12037 DUF3523: Domain of un 21.8 1.1E+03 0.024 26.1 13.2 28 589-616 29-64 (276)
266 PF07795 DUF1635: Protein of u 21.6 5.5E+02 0.012 27.3 9.1 55 632-686 4-60 (214)
267 COG5269 ZUO1 Ribosome-associat 21.4 6.3E+02 0.014 28.0 9.6 77 607-686 233-312 (379)
268 PRK12585 putative monovalent c 21.2 1.6E+02 0.0034 30.8 4.9 15 624-638 128-142 (197)
269 COG1390 NtpE Archaeal/vacuolar 21.2 6.6E+02 0.014 26.2 9.6 58 628-685 16-74 (194)
270 PRK00539 atpC F0F1 ATP synthas 21.1 86 0.0019 30.5 3.0 19 622-640 89-107 (133)
271 TIGR00570 cdk7 CDK-activating 20.8 5E+02 0.011 29.1 9.0 7 622-628 113-119 (309)
272 PRK09174 F0F1 ATP synthase sub 20.3 7.7E+02 0.017 25.8 9.9 11 603-613 88-98 (204)
273 PF11221 Med21: Subunit 21 of 20.3 2.8E+02 0.0061 27.2 6.4 57 605-672 76-136 (144)
274 cd03404 Band_7_HflK Band_7_Hfl 20.3 3.8E+02 0.0083 28.4 8.0 7 624-630 175-181 (266)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=2e-43 Score=411.86 Aligned_cols=554 Identities=27% Similarity=0.359 Sum_probs=348.6
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccC--------------------------------CCC
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNI--------------------------------DGY 86 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~--------------------------------~~~ 86 (776)
+|+|+..|.++|+.+ ++-.||-++||.+...|...+..+.-|. .+.
T Consensus 24 ~~~~~~~~~~~~d~~--~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 24 LPAYYEIIKRPMDIG--TIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDK 101 (640)
T ss_pred chhhhcccCCCCCch--hhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccccccccCC
Confidence 588999999999888 8899999988888888776665442221 112
Q ss_pred ccCCcccceeecccCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCcccCC-CCCcccCCCCCCCCCccCCCCCccccC
Q 004051 87 DNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQVRVLQKKVASLSSNVVLSP-SSDIRSCNDGQKRPLLESVGGPSVVLA 165 (776)
Q Consensus 87 ~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eLeqvR~l~kki~~~~~~~vlsp-~~~~~s~~~~~~~~~~~s~~~~s~s~~ 165 (776)
..+.++..++++.+++..+++.|+.||+.+|++||.+.++++.....-++++ +..... ...+... .........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~d~~~~ 176 (640)
T KOG1474|consen 102 SSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQP--FKSKNGV---KKVADTCVK 176 (640)
T ss_pred cccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccc--cccccch---hhhhccccc
Confidence 2355777888999999999999999999999999999999972222222322 000000 0000000 000000000
Q ss_pred C---CCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCC
Q 004051 166 P---KGKKRAPNGRNGPQTKKGNSGRLEPK-----KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIP 237 (776)
Q Consensus 166 ~---~~kKr~~~~~~~r~~kr~~~~r~~p~-----k~~~~~~~~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~P 237 (776)
. ...+-..++....+...+ .....+. ............++++|..||..||.|+++|+|+.|||++.+++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLp 255 (640)
T KOG1474|consen 177 SYKSKSEREPSPGQKREGTVAP-NSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLP 255 (640)
T ss_pred cccccCcCCCCccccccccccC-ccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCc
Confidence 0 000000001000000000 0000000 122334456789999999999999999999999999999999999
Q ss_pred ChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC-
Q 004051 238 DYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVDM- 316 (776)
Q Consensus 238 DYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~p~~~~~- 316 (776)
|||+||++||||+|||+||.++.|.++.+|++||||||+||++||++|++||.||..|+++|+.+|..+...+......
T Consensus 256 DY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~ 335 (640)
T KOG1474|consen 256 DYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAV 335 (640)
T ss_pred chhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976554321000
Q ss_pred CCCCCCcchhhHHhhhcCCCCccccCCCCccccccccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhccC--CCC
Q 004051 317 TAVPSRADDMIETETRMGMPPMKKKKVSPKETKIKAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSA--GET 394 (776)
Q Consensus 317 e~~p~~~~~~~e~~~~~~~Pp~kkrK~sp~~~~~~~ep~kr~mT~eEK~kL~~~I~~Lp~E~l~~Iv~IIkk~~~--~~~ 394 (776)
........ .......+....++..-.......++....|+.+|+..+...+..++.+...+++..++.... ...
T Consensus 336 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 411 (640)
T KOG1474|consen 336 KEEAGMAS----SDQIPSNSVEGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRK 411 (640)
T ss_pred cccccccc----ccccccccccCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCcccc
Confidence 00000000 000000000111111111112223335678999999999999999999999999999988873 334
Q ss_pred CCCeEEEEccCCCHHHHHHHHHH--HHHHHHHHhhhcCCCCCCccccccccCCCCCccccccCCCCccccccccCCCCCC
Q 004051 395 GEDELEIDIDALSDDTLFALRKL--LDDYLLEKQQKQANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGNDPP 472 (776)
Q Consensus 395 ~~dEIEIDId~L~~~TL~eL~~~--V~~~L~ek~K~~~k~e~~e~e~~~~sg~s~Ss~~~~K~~e~~eE~vdi~gg~~~p 472 (776)
...++++++..+... |.+... .........+..+..+ + ..+.+..+++ .+|
T Consensus 412 ~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~t~~~--------------------~-~~l~~~~~~~----~~p 464 (640)
T KOG1474|consen 412 IEEELESDKRPLVTG--KLIKEKNKKEKAANENKRDMTAPE--------------------K-AKLKELLQNL----LPP 464 (640)
T ss_pred ccccccccccccchh--hhhhhhhccccccccccccccccc--------------------c-ccchhhccCC----CCC
Confidence 445666666665554 333321 0111110000000000 0 1111111211 111
Q ss_pred CCCCCcchhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCccchhhhhccCCCccCcccCCCCCCCC
Q 004051 473 VTDIPPVAIEKDAANRNSKCSSSSSSSSESGSSSSDSGSSSGSEPDAAKASVPANAVEENLVSGANLDEKKSEGVPDIGN 552 (776)
Q Consensus 473 ~~~~pPv~iekd~~~~~s~~SSssSSSSdS~SSSS~s~S~sss~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 552 (776)
-..-.++.+.+- .
T Consensus 465 ~~l~~~~~~~~~----------------------------------------------~--------------------- 477 (640)
T KOG1474|consen 465 NKLESIVEILKP----------------------------------------------E--------------------- 477 (640)
T ss_pred ccccCcccccch----------------------------------------------h---------------------
Confidence 111111221100 0
Q ss_pred CCCcccccccccCCCCCCcccccCCCCCCCCCCCCCCCchHHHHHHHhhccchhhHHHHHH-HHhh-cCCCCChhHHHHH
Q 004051 553 SSVNSLDQVELNSQGKPVAIVADGHHEGESAPSERQVSPDKLYRAALLRNRFADTILKARE-KALE-KGEKRDPEKLRIE 630 (776)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~k~~raa~lk~rfadtilka~~-k~l~-~~~k~dp~kl~~e 630 (776)
.....|.+........-..++ .--+..|..-+...++.+++..+...|++-+.++++ +.+- .....+|+++...
T Consensus 478 ~~~~~l~~~~~~~~~~~~~vd----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 553 (640)
T KOG1474|consen 478 KRQLDLSQNDDEIELDLDSVD----GSQSREPSSNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRS 553 (640)
T ss_pred hhcccccccccchhhcccccc----cccccCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhh
Confidence 000000000000111111110 000111225677789999999999999999999999 5655 4666699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHh
Q 004051 631 REELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENSRFMEDLEM 703 (776)
Q Consensus 631 ~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~~t~~~~~~~~~~~~le~ 703 (776)
.++.+.+.+.++++.++.-..++.+++.+.+.+.. .++.++.+|++++.++..|+.++++..+..+....+.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~~ 625 (640)
T KOG1474|consen 554 ISEEKLREKSEKSSSEASSSSSEDGENKAASSGSL-SPSSSSLERESNNSAEANGSSSSESSSSSSSSSSEEG 625 (640)
T ss_pred hhHHhhhhhhHhhhhhhhhhhHHHHhhcccccccc-CccccccccchhHHHHhcccCccccccccccchhhcc
Confidence 99999999999999999999999999876644333 4677789999999999999999999999998877775
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.3e-26 Score=217.76 Aligned_cols=107 Identities=37% Similarity=0.626 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...|.+.|..||..|++|+.+++|..|||+. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~y 80 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSY 80 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 282 NPP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 282 N~~-gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
|++ ++.||.+|..|++.|+++|+.|...+
T Consensus 81 N~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 81 TPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 99999999999999999999987655
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.7e-26 Score=213.70 Aligned_cols=104 Identities=37% Similarity=0.580 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~-~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
.++++.|..|+++|+++ +.+|+|..||++...++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|+++|.||.+|..|++.|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-26 Score=212.58 Aligned_cols=102 Identities=40% Similarity=0.676 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 004051 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (776)
Q Consensus 204 ~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 283 (776)
++.-.+..||..|++|+.+|+|..|||+.+.++||||+||++||||+||++||+++.|.++.+|.+||+|||.||++||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44455578899999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 004051 284 PQNDVHIMADTLRKYFEVRWKA 305 (776)
Q Consensus 284 ~gS~Vy~~A~~Le~~Fe~~~k~ 305 (776)
+||.||.+|..|++.|+++++.
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998865
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.2e-26 Score=206.17 Aligned_cols=95 Identities=32% Similarity=0.557 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 004051 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (776)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~g 285 (776)
++.|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||++|.|.|+.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004051 286 NDVHIMADTLRKYFEVR 302 (776)
Q Consensus 286 S~Vy~~A~~Le~~Fe~~ 302 (776)
|.||.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999865
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=204.13 Aligned_cols=99 Identities=66% Similarity=1.179 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 004051 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 284 (776)
+++.|..||+.|++|+.+++|..||++....+|+||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004051 285 QNDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 285 gS~Vy~~A~~Le~~Fe~~~ 303 (776)
+|.+|.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2e-25 Score=202.64 Aligned_cols=96 Identities=41% Similarity=0.766 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 004051 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (776)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~g 285 (776)
+..|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004051 286 NDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 286 S~Vy~~A~~Le~~Fe~~~ 303 (776)
+.+|.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.9e-25 Score=202.97 Aligned_cols=98 Identities=50% Similarity=0.901 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcC---CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
++.|..||+.|+++ +.+++|..||++....+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 889999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004051 283 PPQNDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~ 303 (776)
+++|.+|.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.7e-25 Score=206.26 Aligned_cols=103 Identities=36% Similarity=0.705 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
....+..|..||..|+.++.+|+|..||++. .+||||++|++||||+||++||++|.|.|+.+|..||+|||.||++|
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999965 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|+++|.+|.+|..|+++|+++++.+
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.6e-25 Score=201.79 Aligned_cols=101 Identities=33% Similarity=0.463 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
..|.+.|..|++.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999974 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 004051 283 PPQNDVHIMADTLRKYFEVRWKA 305 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~k~ 305 (776)
++++.||.+|..|++.|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999877653
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.6e-25 Score=201.29 Aligned_cols=98 Identities=47% Similarity=0.898 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcC---CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
++.|.+||..|+++ +.+++|..|||+.+..+||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999995 579999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004051 283 PPQNDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~ 303 (776)
+++|.+|.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999887
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.2e-24 Score=199.60 Aligned_cols=101 Identities=38% Similarity=0.521 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...+.+.|..||..|++++.+++|..||++.+.++||||++|++||||+||++||.++.|.++.+|..||+|||.||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 004051 282 NPPQNDVHIMADTLRKYFEVR 302 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~ 302 (776)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.4e-24 Score=199.56 Aligned_cols=101 Identities=37% Similarity=0.695 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHhhhhh
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFSNAM 279 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~---~~Y~S~~eF~~DvrLIF~NA~ 279 (776)
...++.|..||..|++|+.+++|..||++ .+|+||++|++||||+||++||+. +.|.++.+|.+||+|||+||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999997 699999999999999999999998 699999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 280 TYNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 280 ~YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
.||+++|.++.+|..|++.|++.|+.+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 14
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.4e-24 Score=197.02 Aligned_cols=97 Identities=29% Similarity=0.397 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 004051 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 284 (776)
.++.|+.||..|++++.+++|..+ |. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 356799999999999999999763 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 004051 285 QNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 285 gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
+ .++.+|..|++.|+++|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.5e-24 Score=200.52 Aligned_cols=102 Identities=29% Similarity=0.453 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~-~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
..+...|..||..|++| +.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999 8999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHH
Q 004051 282 NPPQN-DVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 282 N~~gS-~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|++++ .++.+|..|++.|+..+..|
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99876 67899999999999888765
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.2e-24 Score=195.78 Aligned_cols=99 Identities=38% Similarity=0.652 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 004051 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 284 (776)
+..+|..|++.|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999977 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 004051 285 QNDVHIMADTLRKYFEVRWKA 305 (776)
Q Consensus 285 gS~Vy~~A~~Le~~Fe~~~k~ 305 (776)
++.+|.+|..|++.|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998775
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.2e-24 Score=195.60 Aligned_cols=97 Identities=29% Similarity=0.393 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
.++...+..++..|. |+.+|+|..||++. .+||||.+|++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457788889999999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 004051 283 PPQNDVHIMADTLRKYFEVR 302 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~ 302 (776)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.8e-24 Score=196.48 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 004051 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 278 (776)
+.+.|..||+.|+++.. +++|..||+.. .+||||.+|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999876 89999988754 89999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 004051 279 MTYNPPQNDVHIMADTLRKYFEVRWKA 305 (776)
Q Consensus 279 ~~YN~~gS~Vy~~A~~Le~~Fe~~~k~ 305 (776)
++||++||.||.+|..|++.|++.+++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998865
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.2e-23 Score=191.47 Aligned_cols=92 Identities=35% Similarity=0.475 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 004051 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 284 (776)
+.+.|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004051 285 QNDVHIMADTLRKY 298 (776)
Q Consensus 285 gS~Vy~~A~~Le~~ 298 (776)
+|.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999764
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=2.7e-23 Score=193.61 Aligned_cols=102 Identities=34% Similarity=0.468 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
.++...|..|+++|+.|+.+++|..||++. .+||||++|++||||+||++||+++.|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHHH
Q 004051 283 PP----QNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 283 ~~----gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
++ |+.||.+|..|++.|..++..+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 99 5799999999999999887754
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.2e-23 Score=189.88 Aligned_cols=92 Identities=32% Similarity=0.485 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 004051 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 284 (776)
+...|+.+|+.|+.|+.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 004051 285 QNDVHIMADTLRKY 298 (776)
Q Consensus 285 gS~Vy~~A~~Le~~ 298 (776)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.4e-23 Score=192.12 Aligned_cols=102 Identities=31% Similarity=0.516 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 004051 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (776)
Q Consensus 207 k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS 286 (776)
..+..|+.+|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35688999999999999999999976 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 287 DVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 287 ~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
.+|.+|..|.+.|+..+..+..++
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999987665
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=9.5e-23 Score=187.05 Aligned_cols=97 Identities=27% Similarity=0.395 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcC------CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 004051 205 LMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 205 l~k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 278 (776)
+++.|..|++.|+++ +.+++|..|++. ..+||||++|++||||+||++||++|.|.|+.+|..||+|||.||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na 78 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSK--KLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANA 78 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCC--CCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999954 568999999774 489999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 004051 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 279 ~~YN~~gS~Vy~~A~~Le~~Fe~~~ 303 (776)
++||++++.+|.+|..|++.|+.++
T Consensus 79 ~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 79 RTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.3e-22 Score=187.01 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcC------CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 004051 206 MKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (776)
Q Consensus 206 ~k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 279 (776)
+++|..|++.|..+ +.+++|..||+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~--~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSK--SEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCc--ccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57888898888875 458999999774 4899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q 004051 280 TYNPPQNDVHIMADTLRKYFEVRWK 304 (776)
Q Consensus 280 ~YN~~gS~Vy~~A~~Le~~Fe~~~k 304 (776)
+||++||.||.+|..|+++|.+..+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=2.1e-22 Score=187.85 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 004051 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 278 (776)
..+.|..|++.|++++ .+.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||+||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999753 4578998655 6699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 279 ~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
++||++||.+|.+|..|+++|++.++++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887764
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=8.9e-22 Score=187.49 Aligned_cols=105 Identities=28% Similarity=0.403 Sum_probs=98.5
Q ss_pred CCchHHHHHHHHHHHHHHH---cCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 004051 199 SSSNAMLMKQCENLLTRLM---SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (776)
Q Consensus 199 ~~~~~~l~k~c~~IL~~L~---~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF 275 (776)
......+...|..++.+|+ +++.+++|..||++.. .+|+||++|++||||+||++||.++.|+++.+|..||+|||
T Consensus 19 ~~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 97 (128)
T cd05529 19 PHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLIL 97 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3456788999999999999 8999999999999664 79999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 004051 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWK 304 (776)
Q Consensus 276 ~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k 304 (776)
.||++||+++|.+|.+|..|++.|...+.
T Consensus 98 ~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 98 SNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 27
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=8.1e-22 Score=180.19 Aligned_cols=102 Identities=44% Similarity=0.724 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...+...|..|+..+.+|+.+++|..||++. .+|+||.+|++||||++|++||++|.|.++.+|.+||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999866 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKA 305 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~ 305 (776)
|++++.+|.+|..|...|+..|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 28
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=4.1e-22 Score=183.05 Aligned_cols=94 Identities=34% Similarity=0.517 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 004051 206 MKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (776)
Q Consensus 206 ~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 279 (776)
++.|..|++.|+++. .+++|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 578899999999864 4799999866 55999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 004051 280 TYNPPQNDVHIMADTLRKYFEV 301 (776)
Q Consensus 280 ~YN~~gS~Vy~~A~~Le~~Fe~ 301 (776)
+||++||.||.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=8.5e-22 Score=181.86 Aligned_cols=96 Identities=27% Similarity=0.399 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcC------CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 004051 205 LMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 205 l~k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 278 (776)
+.+.|..|++.|..+ ..+++|..+++ +..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 456677777777765 45799999766 6699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 004051 279 MTYNPPQNDVHIMADTLRKYFEVR 302 (776)
Q Consensus 279 ~~YN~~gS~Vy~~A~~Le~~Fe~~ 302 (776)
+.||++||.||.+|..|++.|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 30
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=8.4e-22 Score=181.00 Aligned_cols=91 Identities=27% Similarity=0.453 Sum_probs=81.8
Q ss_pred HHHHHHHHcC------CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 004051 210 ENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (776)
Q Consensus 210 ~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 283 (776)
..|++.|+.+ ..+++|..||+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||+
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~~--~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPSK--RKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCCc--ccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3445555544 578999998774 58999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 004051 284 PQNDVHIMADTLRKYFEVR 302 (776)
Q Consensus 284 ~gS~Vy~~A~~Le~~Fe~~ 302 (776)
+||.+|.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=9e-22 Score=180.80 Aligned_cols=94 Identities=27% Similarity=0.415 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHcC------CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 207 KQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 207 k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
+++..|++.|.++ ..+.+|..+|+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSK--KDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCc--ccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566666666654 568899988774 48999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 004051 281 YNPPQNDVHIMADTLRKYFEVR 302 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~ 302 (776)
||++||.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.83 E-value=1.5e-20 Score=164.64 Aligned_cols=84 Identities=44% Similarity=0.799 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHH
Q 004051 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (776)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~V 288 (776)
|..||+.|++|+.+++|..||++. .+|+|+.+|++||||.+|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999999755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004051 289 HIMADT 294 (776)
Q Consensus 289 y~~A~~ 294 (776)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=1.9e-20 Score=166.12 Aligned_cols=96 Identities=45% Similarity=0.624 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 004051 206 MKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (776)
Q Consensus 206 ~k~c~~IL~~L~~~--~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 283 (776)
...|..|+..|+.+ +.+++|..||++. .+|+||.+|++||||++|+.||.++.|.++.+|.+||++||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46899999999999 9999999999974 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 004051 284 PQNDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 284 ~gS~Vy~~A~~Le~~Fe~~~ 303 (776)
+++.+|.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.9e-20 Score=172.26 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHc------CCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 207 KQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 207 k~c~~IL~~L~~------~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
.++..|++.|.+ ++.+++|..+++.. .+||||++|++||||+||++||..+.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555555554 46799999988754 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 004051 281 YNPPQNDVHIMADTLRKYFEVR 302 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~ 302 (776)
||++|+.+|.+|..|++.|+..
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.7e-20 Score=171.84 Aligned_cols=95 Identities=26% Similarity=0.372 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 004051 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 278 (776)
+.++|..|++.|++.+. +.+|..+++ +..+||||++|++||||+||++||.+ |.++.+|.+||+|||+||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 56788999999987643 568886544 66899999999999999999999998 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 004051 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 279 ~~YN~~gS~Vy~~A~~Le~~Fe~~~ 303 (776)
++||++||.+|.+|..|+++|..++
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998765
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=1.5e-19 Score=167.61 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=87.2
Q ss_pred HHHHHHHHc-CCCCccccCCCC---ccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 004051 210 ENLLTRLMS-HQFGWVFNTPVD---VMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (776)
Q Consensus 210 ~~IL~~L~~-~~~s~~F~~PVd---p~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~g 285 (776)
.-++..+.+ -+..++|..||. +.+.++|+||++|++||||+||++||++|.|+++++|.+||+|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445556655 466799999997 4455699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 004051 286 NDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 286 S~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
|.+|.+|..|.......+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888774
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.72 E-value=2.8e-17 Score=152.27 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 004051 204 MLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (776)
Q Consensus 204 ~l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~N 277 (776)
.+++.+..|+..+++|. ++.+|.+.+. ..|+||.+|++||||++|++||++|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 46788899999999985 4678887433 4688999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 278 A~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
|++||.+||.||.+|.+|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998887765
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=9e-17 Score=178.06 Aligned_cols=105 Identities=30% Similarity=0.463 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHcC------CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 203 AMLMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
..+.+.|..|+..+... ..+++|..+|+ +..+|+||+||+.||||++|++||+.+.|.++.+|..|+.|||.
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34445555554444432 56788887655 77999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (776)
Q Consensus 277 NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k 309 (776)
||.+||.+++.||.+|..|++.|...+..+...
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999877543
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.64 E-value=1.7e-16 Score=197.35 Aligned_cols=95 Identities=40% Similarity=0.850 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHH
Q 004051 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (776)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~V 288 (776)
|..||..|+.|..+|||++||++. .+||||+||++||||.||+.|+..|.|.++.+|..||.|||.||.+||.. |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 999999999999999999999976 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004051 289 HIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 289 y~~A~~Le~~Fe~~~k~i 306 (776)
+.....|.++|...|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988753
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.35 E-value=5.9e-13 Score=155.11 Aligned_cols=101 Identities=35% Similarity=0.625 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 004051 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (776)
Q Consensus 204 ~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 283 (776)
.+......||..|.+|..+|+|..||+.. ++||||.+|++||||.||+.+|..+.|.....|++|+..||.||+.||.
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 45667889999999999999999999965 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 004051 284 PQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 284 ~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
.++..|+.|..|...|...++..
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998877765
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.31 E-value=1.3e-12 Score=122.45 Aligned_cols=81 Identities=23% Similarity=0.195 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCC-------CCCCHHHHHHHHHHHhh
Q 004051 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSG-------QYSDPLAFAADVRLTFS 276 (776)
Q Consensus 204 ~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~-------~Y~S~~eF~~DvrLIF~ 276 (776)
+....|..+|..++.|+.+|+|..||++.+..+||||++||+||||+||+++|..+ .|..-..+.+++..+|.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45677888888888889999999999998889999999999999999999999997 45555567777778888
Q ss_pred hhhhcCCC
Q 004051 277 NAMTYNPP 284 (776)
Q Consensus 277 NA~~YN~~ 284 (776)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 87777764
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.04 E-value=3e-10 Score=137.76 Aligned_cols=104 Identities=31% Similarity=0.434 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
..-...+.+..++..|...+...+|..|||+. ++|||+++|++||||.||+.++.++.|.++++|.+|+.||..||+.
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 34567888999999999999999999999977 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
||..+...|..|..|++.....+...
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHhc
Confidence 99999999999999999877766544
No 43
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=2e-09 Score=127.75 Aligned_cols=100 Identities=28% Similarity=0.389 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcC------CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 207 KQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 207 k~c~~IL~~L~~~------~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
+.|..|+....+| ..+.+|.. .|++..+||||.||++||++..|+++|..+.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~--~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLK--LPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhccc--CcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 7788888777765 34678887 456779999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004051 281 YNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~ 308 (776)
||.+||.||.+|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998888764
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.86 E-value=1.7e-09 Score=101.38 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 004051 245 HPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (776)
Q Consensus 245 ~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~g 285 (776)
+||||+||++||.+|.|.++.+|.+||+|||+||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 68999999999999999999999999999999999999863
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.73 E-value=1.1e-08 Score=124.16 Aligned_cols=94 Identities=28% Similarity=0.489 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHH
Q 004051 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVH 289 (776)
Q Consensus 210 ~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy 289 (776)
..|+.+++.-+.+|+|++||+.. .+|+||.+|++||||.||.+++..++|.+..+|..||++|+.||..||+..+.+.
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 44555655667899999999966 7999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHH
Q 004051 290 IMADTLRKYFEVRWKA 305 (776)
Q Consensus 290 ~~A~~Le~~Fe~~~k~ 305 (776)
..|..+-.+....+.+
T Consensus 1466 ~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLLE 1481 (1563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666655544433
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.72 E-value=1.8e-08 Score=116.69 Aligned_cols=99 Identities=27% Similarity=0.404 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
.....++..||..+..+. ....|.+. |.++..|+||.+|..||+|..|++|+..+.|.+++.|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~fekl--p~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKL--PSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhc--cccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 455667777777777663 35677774 4577999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 004051 277 NAMTYNPPQNDVHIMADTLRKYFEVRW 303 (776)
Q Consensus 277 NA~~YN~~gS~Vy~~A~~Le~~Fe~~~ 303 (776)
||+.||.+++.+|.++..|+..|....
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999998754
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.62 E-value=6e-08 Score=117.86 Aligned_cols=101 Identities=26% Similarity=0.371 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 004051 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (776)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~g 285 (776)
.-....|++.+...++..+|..||+.. .++|||.||+.||||.|+|+.+....|.+-++|..|+.|||+|..+||++-
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 445678899999999999999999955 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 004051 286 NDVHIMADTLRKYFEVRWKAIEK 308 (776)
Q Consensus 286 S~Vy~~A~~Le~~Fe~~~k~i~~ 308 (776)
+.+...+..+....-..|..-+.
T Consensus 1341 ~~~t~~~q~mls~~~~~~~eked 1363 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLKEKED 1363 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhchhHH
Confidence 99999888887776666655443
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.49 E-value=3.8e-08 Score=116.56 Aligned_cols=91 Identities=34% Similarity=0.658 Sum_probs=85.2
Q ss_pred HHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHH
Q 004051 215 RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADT 294 (776)
Q Consensus 215 ~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~ 294 (776)
.+..|.++|.|..||+.+++.+|+||.+|++|||++||.+++.++.|.+..+..+|+..+|.||..||.++..|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004051 295 LRKYFEVRWKA 305 (776)
Q Consensus 295 Le~~Fe~~~k~ 305 (776)
++..|......
T Consensus 83 ~~~~~~~~~~~ 93 (640)
T KOG1474|consen 83 LEKLFPKKLRS 93 (640)
T ss_pred chhhccccccc
Confidence 99998765544
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.40 E-value=2.1e-07 Score=109.41 Aligned_cols=67 Identities=31% Similarity=0.517 Sum_probs=63.3
Q ss_pred cCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 004051 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (776)
Q Consensus 218 ~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS 286 (776)
.+.++|+|.++|+.. ..|+||+||+-||||+|+.+|+..+.|.+.++|..|+.+||.||.+||.+-+
T Consensus 300 ~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEES 366 (720)
T ss_pred ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccc
Confidence 489999999999955 8999999999999999999999999999999999999999999999998644
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.91 E-value=2.6e-05 Score=85.68 Aligned_cols=85 Identities=19% Similarity=0.113 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHH
Q 004051 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVH 289 (776)
Q Consensus 210 ~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy 289 (776)
.....+|........|+.|+-.. ..|.|..+|++|+|++|++.|..++.|.| .+|..|+.||+.||++||.+...+|
T Consensus 214 ~~q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yy 290 (418)
T KOG1828|consen 214 TLQEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYY 290 (418)
T ss_pred HHHHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHH
Confidence 34445555566778888877644 79999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHH
Q 004051 290 IMADTLRK 297 (776)
Q Consensus 290 ~~A~~Le~ 297 (776)
..|..+..
T Consensus 291 elank~lh 298 (418)
T KOG1828|consen 291 ELANKQLH 298 (418)
T ss_pred HHHHhhhh
Confidence 99987766
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.87 E-value=2.9e-06 Score=92.95 Aligned_cols=95 Identities=25% Similarity=0.213 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 004051 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (776)
Q Consensus 207 k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS 286 (776)
.....++.+|-+...-..|.-||.+. -.|+|-+||+.|||+.|++.|++.++|.++.+|..|.++|..||..||...+
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCc
Confidence 34456667777777777788888766 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004051 287 DVHIMADTLRKYFEVRW 303 (776)
Q Consensus 287 ~Vy~~A~~Le~~Fe~~~ 303 (776)
.++..|..|..+-...+
T Consensus 100 v~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 100 VPIVAAKRLCPVRLGMT 116 (418)
T ss_pred cccccccccchhhcchh
Confidence 99999999877654433
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.52 E-value=1.8e-05 Score=88.44 Aligned_cols=192 Identities=23% Similarity=0.361 Sum_probs=132.8
Q ss_pred CCCCCC-CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHH
Q 004051 33 GHSSGF-VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLEL 111 (776)
Q Consensus 33 g~~~~~-~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~ 111 (776)
++++.. .|+||.+|..||+-. ++-..+-+.-|.|-..=..+ +.|.+++|.+||-|.-.++
T Consensus 171 ~~p~k~~~PdYy~iIk~Pm~L~--~i~kkl~~~~Y~s~eef~~D---~~lM~~N~~~yN~~~s~v~-------------- 231 (371)
T COG5076 171 GLPSKREYPDYYEIIKSPMDLL--TIQKKLKNGRYKSFEEFVSD---LNLMFDNCKLYNGPDSSVY-------------- 231 (371)
T ss_pred cCCccccCCChheeecchhhHH--HHHHHHHhhhhhhHHHHHHH---HHHHHHhhhhccCCCcchh--------------
Confidence 334444 699999999999876 66666666556655444322 2455677999998876555
Q ss_pred HHHhHHHHHHHHHHHhhhccCCcccCCCCCcccCCCCCCCCCccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004051 112 KLKTDLEQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEP 191 (776)
Q Consensus 112 Rl~~eLeqvR~l~kki~~~~~~~vlsp~~~~~s~~~~~~~~~~~s~~~~s~s~~~~~kKr~~~~~~~r~~kr~~~~r~~p 191 (776)
+-...|+ ..+.+.|..++.... . . . .. +++ ..+..
T Consensus 232 ~~a~~l~--~~~~~~i~~~~~~~~-------~---------~--------~-----~~----~~~----~~~~~------ 266 (371)
T COG5076 232 VDAKELE--KYFLKLIEEIPEEML-------E---------L--------S-----IK----PGR----EEREE------ 266 (371)
T ss_pred hhhHHHH--HHHHHHHHhccccch-------h---------h--------c-----cC----ccc----ccccc------
Confidence 3333444 344555544332110 0 0 0 00 000 00000
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHH
Q 004051 192 KKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271 (776)
Q Consensus 192 ~k~~~~~~~~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~Dv 271 (776)
+-..++.....+...|+|..++... ..|+|+++|..+|++.|.+.++..+.|....+|..|.
T Consensus 267 ----------------~~~~~i~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (371)
T COG5076 267 ----------------RESVLITNSQAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDA 328 (371)
T ss_pred ----------------chhhcccccccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCCcccccccc
Confidence 1122333336778899999988755 8999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 272 RLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 272 rLIF~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
.++|+||..||.....++..+..+..+|......+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 329 KLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred chhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 99999999999999999999999999887765543
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.029 Score=66.54 Aligned_cols=75 Identities=36% Similarity=0.465 Sum_probs=36.1
Q ss_pred HHHHHHHhh-cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHH
Q 004051 609 LKAREKALE-KGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRK----AEAEAAAE-AKRKRELEREAARQAL 682 (776)
Q Consensus 609 lka~~k~l~-~~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~----~~~~~~~e-~~~~re~er~~ar~~l 682 (776)
|..|-++|. |-.+.--++-|.||||-||+ |++|.++|-|+..+-.++ +|-|++.| .++|+-.+|||||++|
T Consensus 329 LerRRq~leeqqqreree~eqkEreE~ekk---ererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~El 405 (1118)
T KOG1029|consen 329 LERRRQALEEQQQREREEVEQKEREEEEKK---ERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREEL 405 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554 33222222333344433333 345666666666554432 33333322 2333334578999998
Q ss_pred HHhh
Q 004051 683 QMME 686 (776)
Q Consensus 683 ~~m~ 686 (776)
.+|-
T Consensus 406 EkqR 409 (1118)
T KOG1029|consen 406 EKQR 409 (1118)
T ss_pred HHHH
Confidence 7653
No 54
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=95.06 E-value=0.35 Score=50.56 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=5.1
Q ss_pred hccccccC
Q 004051 743 LGLYMKMD 750 (776)
Q Consensus 743 lgl~~k~d 750 (776)
|=||+|.|
T Consensus 206 ~pF~~k~~ 213 (216)
T PF11600_consen 206 LPFFVKDD 213 (216)
T ss_pred cCceecCC
Confidence 34777765
No 55
>PLN03086 PRLI-interacting factor K; Provisional
Probab=94.99 E-value=0.052 Score=63.87 Aligned_cols=74 Identities=36% Similarity=0.422 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHH
Q 004051 627 LRIEREELERRHREEKA----RLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENSRFMEDL 701 (776)
Q Consensus 627 l~~e~e~le~~q~eeka----rl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~~t~~~~~~~~~~~~l 701 (776)
|+.-+|.||+.|+|-|+ ||++|-|+-++|++++||..+ ..+++|--.++|+-.|=|+|+....-...+-|..-|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEA-AQRSRRLDAIEAQIKADQQMQESLQAGRGIVFSRIF 82 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 45556666666655443 688899998888888886333 333333334555566778888766555555444333
No 56
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=94.92 E-value=0.045 Score=52.98 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 004051 246 PMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKA 305 (776)
Q Consensus 246 PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~ 305 (776)
|.||.-|++|+..|.|+++.+|.+||-.|+.-++.-......+-..-..+.-+|-+.+..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 889999999999999999999999999999877765543333333333344455444433
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.63 E-value=1.8 Score=52.70 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=28.3
Q ss_pred HHHHHHHhhccchhhHHHHHHHHhhcC---CCCChhHHHHHHHHHHH
Q 004051 593 KLYRAALLRNRFADTILKAREKALEKG---EKRDPEKLRIEREELER 636 (776)
Q Consensus 593 k~~raa~lk~rfadtilka~~k~l~~~---~k~dp~kl~~e~e~le~ 636 (776)
|.|||-|=-.|-.+.=|+.|---|..+ -|.+-.-||+|-|+|+.
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 668888878888888888885545443 23444445556665555
No 58
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=93.47 E-value=2 Score=46.41 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004051 641 EKARLQAEAKAAEEARRKAEA 661 (776)
Q Consensus 641 ekarl~a~~~aae~a~r~~~~ 661 (776)
.+++++++...++++.|++.|
T Consensus 111 ~~~~~E~~k~~~e~e~Rk~lA 131 (264)
T PF13904_consen 111 LKQKEEREKQEEEKEERKRLA 131 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444
No 59
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.46 E-value=0.52 Score=59.33 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHH
Q 004051 260 QYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299 (776)
Q Consensus 260 ~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~~F 299 (776)
.|..++.|.. +...| ..-++||.++..|-.++
T Consensus 206 ~YmAPEvL~g-------e~~~~-s~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 206 YYWSPELLLH-------ETKSY-DDKSDMWALGCIIYELC 237 (1021)
T ss_pred cccCHHHHhc-------cCCCC-CchhHHHHHHHHHHHHH
Confidence 4666665532 22223 34578888888775554
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=0.56 Score=56.31 Aligned_cols=65 Identities=35% Similarity=0.500 Sum_probs=30.7
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 004051 617 EKGEKRDPEKLRIEREELERRHREEKA-RLQA----EAKAAEEARRKAEA--EAAAEAKRKRELEREAARQA 681 (776)
Q Consensus 617 ~~~~k~dp~kl~~e~e~le~~q~eeka-rl~a----~~~aae~a~r~~~~--~~~~e~~~~re~er~~ar~~ 681 (776)
.+-++..-+|-++|+-|.||+++.|-. +||- |+...|+.+|..|+ .|..|..++|.+|=|.||.+
T Consensus 348 eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~q 419 (1118)
T KOG1029|consen 348 EQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQ 419 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555665555555555544432 2211 12222333332222 23455666666666666654
No 61
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.80 E-value=0.66 Score=58.46 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=3.6
Q ss_pred hhhhhcc
Q 004051 739 PLEQLGL 745 (776)
Q Consensus 739 ~le~lgl 745 (776)
-|+++|+
T Consensus 602 ~~~r~~~ 608 (1021)
T PTZ00266 602 DSMRSGV 608 (1021)
T ss_pred hhhhccc
Confidence 4555554
No 62
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.08 E-value=1.2 Score=53.50 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 004051 405 ALSDDTLFALRKLLDDYLLEK 425 (776)
Q Consensus 405 ~L~~~TL~eL~~~V~~~L~ek 425 (776)
.-|++|+.+|-.-|+.||.-.
T Consensus 770 ksDPe~m~~lv~kVn~WLv~s 790 (1259)
T KOG0163|consen 770 KSDPETMLELVAKVNKWLVRS 790 (1259)
T ss_pred hcCHHHHHHHHHHHHHHHHHh
Confidence 347778888877788876543
No 63
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=87.64 E-value=0.38 Score=58.14 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=51.7
Q ss_pred cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 004051 243 IKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVR 302 (776)
Q Consensus 243 Ik~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~~Fe~~ 302 (776)
-.-|..|..|+.+|++++|++.+.|.+||..|.+||.+|-.-+..+-..+..|...|...
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 346899999999999999999999999999999999999988877777777776666543
No 64
>PTZ00121 MAEBL; Provisional
Probab=87.38 E-value=2.4 Score=54.37 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=7.2
Q ss_pred HhhccchhhHHHHHH
Q 004051 599 LLRNRFADTILKARE 613 (776)
Q Consensus 599 ~lk~rfadtilka~~ 613 (776)
..|.++|-.+-.||.
T Consensus 1121 ~~r~e~arr~eeARr 1135 (2084)
T PTZ00121 1121 KKKAEDARKAEEARK 1135 (2084)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345555555544443
No 65
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=86.74 E-value=3.1 Score=50.27 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 004051 292 ADTLRKYFEVRWK 304 (776)
Q Consensus 292 A~~Le~~Fe~~~k 304 (776)
-+.|+.+|.+.+-
T Consensus 478 NEKLQ~FFNerIL 490 (1259)
T KOG0163|consen 478 NEKLQKFFNERIL 490 (1259)
T ss_pred HHHHHHHHHHHHH
Confidence 3566666665543
No 66
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=85.61 E-value=2.6 Score=51.04 Aligned_cols=8 Identities=38% Similarity=0.605 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 004051 609 LKAREKAL 616 (776)
Q Consensus 609 lka~~k~l 616 (776)
|+|-+.+|
T Consensus 216 v~~~qe~L 223 (1064)
T KOG1144|consen 216 VRAMQEAL 223 (1064)
T ss_pred HHHHHHHH
Confidence 44444444
No 67
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=83.77 E-value=0.58 Score=58.61 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=55.8
Q ss_pred CccccCCCCccccC---CCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHHhhhhhhcCCCC
Q 004051 222 GWVFNTPVDVMKLN---IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA--DVRLTFSNAMTYNPPQ 285 (776)
Q Consensus 222 s~~F~~PVdp~k~~---~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~--DvrLIF~NA~~YN~~g 285 (776)
...|..|+.+...- +++|-.+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 56777777643222 5699999999999999999999999999999999 9999999999999864
No 68
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=83.04 E-value=0.17 Score=47.28 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=44.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|||+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.| +.+|..||-|.-.+.
T Consensus 36 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~D~~li---~~Na~~yN~~~s~i~ 90 (107)
T cd05497 36 NLPDYHKIIKTPMDLG--TIKKRLENNYYWSASECIQDFNTM---FTNCYIYNKPGDDVV 90 (107)
T ss_pred cCCcHHHHHcCcccHH--HHHHHHcCCCCCCHHHHHHHHHHH---HHHHHHHCCCCCHHH
Confidence 3799999999999988 899999999999988875555554 445889998875555
No 69
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=80.45 E-value=18 Score=43.49 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=3.0
Q ss_pred HHHHhhh
Q 004051 681 ALQMMEK 687 (776)
Q Consensus 681 ~l~~m~~ 687 (776)
++.+-|.
T Consensus 360 e~ea~E~ 366 (811)
T KOG4364|consen 360 EVEAQEL 366 (811)
T ss_pred HHHHHHH
Confidence 4444443
No 70
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=78.40 E-value=0.28 Score=45.52 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=45.0
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|||+.+|..||+.. ++-.+|++..|.+.+.-..+-+.|.-| |-.||-++-.+.
T Consensus 36 ~pdYy~iIk~Pmdl~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 89 (103)
T cd05518 36 YPDYYKIILEPIDLK--TIEHNIRNDKYATEEELMDDFKLMFRN---ARHYNEEGSQVY 89 (103)
T ss_pred CccHHHHcCCCcCHH--HHHHHHCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999987 899999999999998887777776555 888997764444
No 71
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=77.14 E-value=3 Score=41.22 Aligned_cols=9 Identities=11% Similarity=0.125 Sum_probs=3.4
Q ss_pred hccCCCccC
Q 004051 533 LVSGANLDE 541 (776)
Q Consensus 533 ~~~~~~~d~ 541 (776)
++++.+++.
T Consensus 144 SssdSdS~s 152 (177)
T KOG3116|consen 144 SSSDSDSES 152 (177)
T ss_pred CCCcccccc
Confidence 333333333
No 72
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=76.67 E-value=15 Score=45.18 Aligned_cols=72 Identities=26% Similarity=0.385 Sum_probs=34.6
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 004051 611 AREKALEKGEKRDPEKLRIEREELERRHREEK--ARLQAEAKAAEEARRKAEAEAAAEAKRKRELE---REAARQALQMM 685 (776)
Q Consensus 611 a~~k~l~~~~k~dp~kl~~e~e~le~~q~eek--arl~a~~~aae~a~r~~~~~~~~e~~~~re~e---r~~ar~~l~~m 685 (776)
||.+++ ..-|.|-+|++.++|.-+.++++.+ +--+||.|++.++...+ +..|..+|.| -+..+..+++|
T Consensus 568 aRk~li-E~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Er-----e~~R~l~E~e~i~~k~~ke~~~~~ 641 (988)
T KOG2072|consen 568 ARKSLI-EKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKER-----EAKRILREKEAIRKKELKERLEQL 641 (988)
T ss_pred HHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 4457788888776665555544333 22223333333222211 1122233444 55667777777
Q ss_pred hhc
Q 004051 686 EKT 688 (776)
Q Consensus 686 ~~t 688 (776)
+.|
T Consensus 642 ~~t 644 (988)
T KOG2072|consen 642 KQT 644 (988)
T ss_pred HHH
Confidence 654
No 73
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=76.16 E-value=11 Score=40.50 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=45.4
Q ss_pred HhhccchhhHHHHHHHH-hhc-----CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 599 LLRNRFADTILKAREKA-LEK-----GEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRE 672 (776)
Q Consensus 599 ~lk~rfadtilka~~k~-l~~-----~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re 672 (776)
++|+.|+-+..+.|... +.+ ..+.+-++++.+.+++-..-++|-++|.++|++..++-+.+.....++++.+++
T Consensus 4 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e 83 (255)
T TIGR03825 4 IIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83 (255)
T ss_pred hhcCccCCcchhhcceeeeeeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555431 111 223345677778888777777888888777776555444322122233344444
Q ss_pred HHHHHHHHH
Q 004051 673 LEREAARQA 681 (776)
Q Consensus 673 ~er~~ar~~ 681 (776)
.-++.||+.
T Consensus 84 ~~~e~A~~e 92 (255)
T TIGR03825 84 RLIQEAKQE 92 (255)
T ss_pred HHHHHHHHH
Confidence 444444444
No 74
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.71 E-value=7.4 Score=42.14 Aligned_cols=19 Identities=47% Similarity=0.615 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004051 628 RIEREELERRHREEKARLQ 646 (776)
Q Consensus 628 ~~e~e~le~~q~eekarl~ 646 (776)
|+|+-+||+...|||.|++
T Consensus 330 rqekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 330 RQEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777764
No 75
>PLN03086 PRLI-interacting factor K; Provisional
Probab=75.35 E-value=6.1 Score=47.08 Aligned_cols=63 Identities=35% Similarity=0.495 Sum_probs=41.1
Q ss_pred HHHHHHh-hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 610 KAREKAL-EKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELER 675 (776)
Q Consensus 610 ka~~k~l-~~~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er 675 (776)
+|++|.. .|.+..+-.|+++|+| |+.|+|.|+--.++-|+...||.-.++|+++++++-+.-|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKLERE---RKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESL 70 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677644 3666677777777664 5666776666666777777777766666666655555433
No 76
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=74.98 E-value=0.46 Score=44.42 Aligned_cols=55 Identities=13% Similarity=-0.015 Sum_probs=44.3
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|..||+.+ ++..+++++.|.+-+....+-++|--| |..||-+.-.+.
T Consensus 35 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 89 (108)
T cd05495 35 GIPDYFDIVKNPMDLS--TIRRKLDTGQYQDPWQYVDDVWLMFDN---AWLYNRKTSRVY 89 (108)
T ss_pred CCCcHHHHhCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999988 899999999999988887666666544 888996654443
No 77
>PTZ00121 MAEBL; Provisional
Probab=74.04 E-value=14 Score=47.92 Aligned_cols=6 Identities=33% Similarity=0.291 Sum_probs=2.1
Q ss_pred hhhHHH
Q 004051 605 ADTILK 610 (776)
Q Consensus 605 adtilk 610 (776)
|+.+-|
T Consensus 1142 ~EeaRK 1147 (2084)
T PTZ00121 1142 AEEARK 1147 (2084)
T ss_pred HHHHHH
Confidence 333333
No 78
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=73.67 E-value=6.7 Score=45.68 Aligned_cols=14 Identities=50% Similarity=0.717 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 004051 667 AKRKRELEREAARQ 680 (776)
Q Consensus 667 ~~~~re~er~~ar~ 680 (776)
-|+.++-|||.+|+
T Consensus 351 er~~~~ee~e~~R~ 364 (460)
T KOG1363|consen 351 ERKEEEEERETARQ 364 (460)
T ss_pred hhhhHHHHHHHHHH
Confidence 33344566777775
No 79
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=73.19 E-value=15 Score=43.49 Aligned_cols=103 Identities=30% Similarity=0.365 Sum_probs=65.8
Q ss_pred HHHhhccchhhHH--------HHHHH-HhhcCCCCC---hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 004051 597 AALLRNRFADTIL--------KAREK-ALEKGEKRD---PEKLRIEREELERRHREEK---ARLQAEAKAAEEARRKAEA 661 (776)
Q Consensus 597 aa~lk~rfadtil--------ka~~k-~l~~~~k~d---p~kl~~e~e~le~~q~eek---arl~a~~~aae~a~r~~~~ 661 (776)
+|=|+.+.||.-+ .+|+| +|.|.-..+ -+||+.|++++++.-+||+ .+|+.++....++.|-.-.
T Consensus 334 ~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqls 413 (546)
T PF07888_consen 334 AAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLS 413 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5556666666644 34555 455544455 4577888888888766654 4888888877777764331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHhhh
Q 004051 662 EAAAEAKRKRELEREAARQALQMMEKTVDINENSRFMEDLEMLR 705 (776)
Q Consensus 662 ~~~~e~~~~re~er~~ar~~l~~m~~t~~~~~~~~~~~~le~l~ 705 (776)
...||+.--.+-..+.+|||.=-..++-..+.+++.|.
T Consensus 414 ------E~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 414 ------ENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344444456667778888777777777777766654
No 80
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=72.19 E-value=0.34 Score=44.64 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=46.9
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|..||+.. ++..||++..|.+-+.-..+-+.|--| |-.||-|.-.++
T Consensus 30 ~~pdY~~vIk~PmDL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 84 (98)
T cd05513 30 IAPGYSSIIKHPMDFS--TMKEKIKNNDYQSIEEFKDDFKLMCEN---AMKYNKPDTIYY 84 (98)
T ss_pred ccccHHHHHcCccCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999988 899999999999998887777776555 889998876666
No 81
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=71.54 E-value=28 Score=31.46 Aligned_cols=40 Identities=35% Similarity=0.518 Sum_probs=28.5
Q ss_pred CCCCChhHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 004051 619 GEKRDPEKL-RIEREELERRHREEKA-RLQAEAKAAEEARRK 658 (776)
Q Consensus 619 ~~k~dp~kl-~~e~e~le~~q~eeka-rl~a~~~aae~a~r~ 658 (776)
.+..+|.-| |+|+|++|+++..++= .|+++.|..|+..-+
T Consensus 17 ~~~~~~~~lSRRERE~iekq~A~erY~klh~~GKT~eakaDL 58 (82)
T PF10252_consen 17 IDEDAPPELSRREREEIEKQRARERYMKLHAEGKTDEAKADL 58 (82)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHhhchHHHHHhH
Confidence 333455556 7899999999766654 688888887765544
No 82
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.41 E-value=46 Score=34.88 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=4.6
Q ss_pred CCChhHHHH
Q 004051 621 KRDPEKLRI 629 (776)
Q Consensus 621 k~dp~kl~~ 629 (776)
.-||+...+
T Consensus 149 edDp~lfk~ 157 (250)
T KOG1150|consen 149 EDDPELFKQ 157 (250)
T ss_pred ccCHHHHHH
Confidence 346665543
No 83
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=71.30 E-value=0.94 Score=42.62 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=59.2
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHH
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eL 117 (776)
..|+|+..|..|++.. ++-.++.+..|.+.+....+-+.|--| |..||-+.-.+. ...+.|++.....+
T Consensus 29 ~~p~Y~~~I~~PmdL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~s~i~------~~A~~l~~~~~~~~ 97 (112)
T cd05511 29 KVPDYYKIIKRPMDLQ--TIRKKISKHKYQSREEFLEDIELIVDN---SVLYNGPDSVYT------KKAKEMLELAEELL 97 (112)
T ss_pred hcccHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999887 889999999999998887777777655 788986654443 34556777777666
Q ss_pred HHHHHHHHHh
Q 004051 118 EQVRVLQKKV 127 (776)
Q Consensus 118 eqvR~l~kki 127 (776)
+++..-.+-+
T Consensus 98 ~~~~~~~~~~ 107 (112)
T cd05511 98 AEREEKLTQL 107 (112)
T ss_pred HHhHHHHHHH
Confidence 6655544444
No 84
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=70.79 E-value=19 Score=44.36 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 638 HREEKARLQAEAKAAEEARRKAEAEA 663 (776)
Q Consensus 638 q~eekarl~a~~~aae~a~r~~~~~~ 663 (776)
++.|+-|+....+.+|++.|++|.++
T Consensus 794 ~R~eerk~~~~re~EEEr~Rr~EEe~ 819 (988)
T KOG2072|consen 794 ARIEERKQAYYREIEEERARREEEEA 819 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566566667777777666543
No 85
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=70.78 E-value=22 Score=40.61 Aligned_cols=8 Identities=63% Similarity=0.808 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 004051 641 EKARLQAE 648 (776)
Q Consensus 641 ekarl~a~ 648 (776)
|+.|++++
T Consensus 107 e~er~~~~ 114 (387)
T PRK09510 107 EKERLAAQ 114 (387)
T ss_pred HHHHHHHH
Confidence 33444443
No 86
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=69.59 E-value=25 Score=39.68 Aligned_cols=12 Identities=58% Similarity=0.678 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 004051 650 KAAEEARRKAEA 661 (776)
Q Consensus 650 ~aae~a~r~~~~ 661 (776)
|++|+|.+++|+
T Consensus 143 K~~e~a~~kae~ 154 (346)
T TIGR02794 143 KAKEEAAKQAEE 154 (346)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=69.14 E-value=21 Score=44.67 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=23.4
Q ss_pred CChhhhcCCCCCHHHHHHHH-hCCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 004051 237 PDYFTVIKHPMDLGTIKCKI-TSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (776)
Q Consensus 237 PDYy~iIk~PMDL~TIkkKL-~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS 286 (776)
--|+.--.+||-|.-+...+ -.+.|..+.+|+ .||..++..++
T Consensus 261 ~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la-------~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 261 RAYKENNENPVALNHLANHFYFKKDYERVWHLA-------EHAIKNTENKS 304 (1018)
T ss_pred HHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHH-------HHHHHhhhhhH
Confidence 34666777888776665554 233454444443 35555554443
No 88
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=68.84 E-value=38 Score=34.08 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=49.2
Q ss_pred hhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 606 DTILKAREKALEKGEKRDPEKLRIEREELERRHREEKA--RLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQ 683 (776)
Q Consensus 606 dtilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eeka--rl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~ 683 (776)
..||..|++....+ -...++++.|-++++..-+++-+ |.+|+.-++| ||.+..|+++++.+.-.+.=+..--+..+
T Consensus 36 ~~iLe~R~~~I~~~-L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e-~~~~~~a~~~~~~~~~ea~L~~~~~~~~~ 113 (155)
T PRK06569 36 EEIFNNRQTNIQDN-ITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE-KIDSLESEFLIKKKNLEQDLKNSINQNIE 113 (155)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777654321 22334555555555554444433 3333333333 34444555555555555555556667788
Q ss_pred HhhhccCcccccccHHHHHhhh
Q 004051 684 MMEKTVDINENSRFMEDLEMLR 705 (776)
Q Consensus 684 ~m~~t~~~~~~~~~~~~le~l~ 705 (776)
+|.+.++ +--...-..|-+|.
T Consensus 114 ~~~~~~~-~~~~~~~~~~i~~~ 134 (155)
T PRK06569 114 DINLAAK-QFRTNKSEAIIKLA 134 (155)
T ss_pred HHHHHHH-HHHHhHHHHHHHHH
Confidence 8888887 32333233444444
No 89
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=68.47 E-value=0.51 Score=43.54 Aligned_cols=55 Identities=22% Similarity=0.109 Sum_probs=46.0
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|||+..|.+||+-. ++-.|++++.|.+-+....+-+.|--| +..||-|.-.++
T Consensus 31 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~LI~~N---a~~YN~~~s~i~ 85 (99)
T cd05508 31 QFPDYAQYVFKPMDLS--TLEKNVRKKAYGSTDAFLADAKWILHN---AIIYNGGDHKLT 85 (99)
T ss_pred hCCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5799999999999987 899999999999999987777776555 788997764444
No 90
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=68.17 E-value=30 Score=35.30 Aligned_cols=24 Identities=63% Similarity=0.757 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 625 EKLRIEREELERRHREEKARLQAE 648 (776)
Q Consensus 625 ~kl~~e~e~le~~q~eekarl~a~ 648 (776)
++.|+++|+.+++.+++.++..++
T Consensus 43 E~ER~ekEE~er~~ree~~~k~~E 66 (171)
T PF05672_consen 43 EQERLEKEEQERRKREELARKLAE 66 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 91
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=67.68 E-value=0.75 Score=42.85 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=44.9
Q ss_pred CCCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCccc
Q 004051 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (776)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~ 93 (776)
..+|||+.+|.+||+-+ ++-.+++++.|.+-+.-..+-+.|--| |-.||-+.
T Consensus 28 ~~~pdY~~iIk~PMDL~--tI~~kL~~~~Y~s~~ef~~D~~Lif~N---~~~yN~~~ 79 (102)
T cd05501 28 YYIRDYCQGIKEPMWLN--KVKERLNERVYHTVEGFVRDMRLIFHN---HKLFYKDD 79 (102)
T ss_pred CCCCchHHHcCCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHcCCC
Confidence 46899999999999987 899999999999999988777777555 88899665
No 92
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=67.64 E-value=0.89 Score=43.41 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=42.1
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcc
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~ 92 (776)
.+|||+.+|.+||+.. ++-.|+.++.|.+-+.-..+-+.|--| |-.||.+
T Consensus 34 ~~pdY~~iIk~PmDL~--tIk~kL~~~~Y~~~~ef~~D~~lif~N---a~~yN~~ 83 (119)
T cd05496 34 KYPDYRDIIDTPMDLG--TVKETLFGGNYDDPMEFAKDVRLIFSN---SKSYTPN 83 (119)
T ss_pred hcCcHHHHhCCcccHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 3799999999999987 899999999999988887666666555 8889964
No 93
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=67.05 E-value=0.71 Score=42.79 Aligned_cols=55 Identities=7% Similarity=0.016 Sum_probs=43.8
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+..|..||+.+ ++-.|++++.|.|-+.-..+-..|- .+|..||-|...+.
T Consensus 32 ~~p~Y~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~---~Na~~yN~~~s~v~ 86 (104)
T cd05507 32 IAPGYHSVVYRPMDLS--TIKKNIENGTIRSTAEFQRDVLLMF---QNAIMYNSSDHDVY 86 (104)
T ss_pred ccCCHHHHhCCCcCHH--HHHHHHhcCCCCCHHHHHHHHHHHH---HHHHHHCCCCCHHH
Confidence 4799999999999988 8999999999998888765555554 44888997764444
No 94
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=66.94 E-value=0.9 Score=42.86 Aligned_cols=55 Identities=15% Similarity=0.075 Sum_probs=45.6
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|..|++.. ++..||++..|.+-..-..+-+.|.-| +-.||.|.-.+.
T Consensus 37 ~~PdYy~iI~~Pmdl~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~~~ 91 (113)
T cd05524 37 NEPEYYEVVSNPIDLL--KIQQKLKTEEYDDVDDLTADFELLINN---AKAYYKPDSPEH 91 (113)
T ss_pred cCCCHHHHhCCccCHH--HHHHHhCcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999988 899999999999998887777776555 788997765444
No 95
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=66.87 E-value=0.73 Score=42.18 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=43.6
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccce
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQV 95 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v 95 (776)
.+|+|+.+|..||+.. ++-.|+++..|.+-+.-..+-+.|.-| |..||-+.-.
T Consensus 30 ~~p~Y~~~I~~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~li~~N---a~~yN~~~s~ 82 (101)
T cd05509 30 EAPDYYDVIKKPMDLS--TMEEKLENGYYVTLEEFVADLKLIFDN---CRLYNGPDTE 82 (101)
T ss_pred hcCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCH
Confidence 4899999999999887 899999999999998887666666545 8889966533
No 96
>PLN02316 synthase/transferase
Probab=66.77 E-value=13 Score=47.36 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=7.1
Q ss_pred eEEEEccCCCHHHHH
Q 004051 398 ELEIDIDALSDDTLF 412 (776)
Q Consensus 398 EIEIDId~L~~~TL~ 412 (776)
.+-+|.+.++++.+.
T Consensus 100 ~~~~~~~~~~~~~~~ 114 (1036)
T PLN02316 100 SISTDMDGIDDDSLD 114 (1036)
T ss_pred cccccccccchHHHH
Confidence 344455555554443
No 97
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=66.62 E-value=5.1 Score=48.07 Aligned_cols=13 Identities=38% Similarity=0.370 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHH
Q 004051 405 ALSDDTLFALRKL 417 (776)
Q Consensus 405 ~L~~~TL~eL~~~ 417 (776)
.|..-||+.|+..
T Consensus 1192 flthvtlrrlrdv 1204 (1463)
T PHA03308 1192 FLTHVTLRRLRDV 1204 (1463)
T ss_pred hhhhhhHHHHHHH
Confidence 3566778777764
No 98
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=66.51 E-value=0.6 Score=43.30 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|..|++.. ++..++++..|.+-+.-..+-+.|.-| +..||-+.-.+.
T Consensus 35 ~~PdYy~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~i~ 89 (103)
T cd05520 35 KYPDYYQEIKNPISLQ--QIRTKLKNGEYETLEELEADLNLMFEN---AKRYNVPNSRIY 89 (103)
T ss_pred cCCCHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999988 899999999999988887776666555 888997764444
No 99
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=65.17 E-value=0.91 Score=42.96 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=44.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
-+|+|+.+|..||+.+ ++-.+|++..|.+.+.-..+-+.|--| |..||-+.-.+.
T Consensus 41 ~~pdY~~vI~~PmDL~--tI~~kL~~~~Y~s~~~f~~Dv~LI~~N---a~~yN~~~s~i~ 95 (115)
T cd05504 41 EVPDYYDIIKKPMDLG--TIKEKLNMGEYKLAEEFLSDIQLVFSN---CFLYNPEHTSVY 95 (115)
T ss_pred ccccHHHHhcCcccHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999988 899999999999988776666665444 888997775555
No 100
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=64.60 E-value=24 Score=35.00 Aligned_cols=57 Identities=33% Similarity=0.430 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 004051 627 LRIEREELERRHREEK-ARLQAEAKAAEEARRKAEA----EAAAEAKRKRELEREAARQALQ 683 (776)
Q Consensus 627 l~~e~e~le~~q~eek-arl~a~~~aae~a~r~~~~----~~~~e~~~~re~er~~ar~~l~ 683 (776)
-|+|+|++|++.-.|+ -+|+...|.-++..-.|-. ..-+|+-++||.|+.||+-+-+
T Consensus 108 SRRereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekkaa~~~tk 169 (174)
T KOG3375|consen 108 SRREREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKKAADVATK 169 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4889999998755444 3666665554443322111 1245667788888888876643
No 101
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=64.18 E-value=27 Score=42.88 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=3.9
Q ss_pred HHHhhhcc
Q 004051 700 DLEMLRIA 707 (776)
Q Consensus 700 ~le~l~~~ 707 (776)
-++.|+.+
T Consensus 339 s~~~~~~~ 346 (1064)
T KOG1144|consen 339 SVEKLGEV 346 (1064)
T ss_pred hhhhcccC
Confidence 34555544
No 102
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.12 E-value=38 Score=36.34 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=10.0
Q ss_pred HHHHHHHhhhccCccc
Q 004051 678 ARQALQMMEKTVDINE 693 (776)
Q Consensus 678 ar~~l~~m~~t~~~~~ 693 (776)
+-.+..+|+-.+-+++
T Consensus 172 eheEylkmKaaFsVee 187 (299)
T KOG3054|consen 172 EHEEYLKMKAAFSVEE 187 (299)
T ss_pred HHHHHHHHHhheeecc
Confidence 3456678887666553
No 103
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.43 E-value=46 Score=41.52 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 605 ADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEA 649 (776)
Q Consensus 605 adtilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekarl~a~~ 649 (776)
.+.|-+|++. | ..+..+-++|=.+.++..+...+++..+++..
T Consensus 501 ~~ii~~A~~~-~-~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~ 543 (782)
T PRK00409 501 ENIIEEAKKL-I-GEDKEKLNELIASLEELERELEQKAEEAEALL 543 (782)
T ss_pred HHHHHHHHHH-H-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566663 2 22334555654444433333333333333333
No 104
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=62.05 E-value=0.73 Score=42.38 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=46.8
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.|.-| |..||-|.-.++
T Consensus 30 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~~~ 84 (98)
T cd05512 30 EVPDYLDHIKQPMDFS--TMRKKLESQRYRTLEDFEADFNLIINN---CLAYNAKDTIFY 84 (98)
T ss_pred ccCCHHHHhcCCcCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5899999999999988 899999999999998887777777655 888998765555
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=61.97 E-value=68 Score=37.14 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHH
Q 004051 624 PEKLRIEREELERR 637 (776)
Q Consensus 624 p~kl~~e~e~le~~ 637 (776)
-.+++.|+..++.+
T Consensus 201 l~~~~~E~kk~~~~ 214 (420)
T COG4942 201 LAQLLEERKKTLAQ 214 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455444443
No 106
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=61.48 E-value=79 Score=31.73 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 004051 608 ILKAREKALEKGEKRDPEKLRIEREELER 636 (776)
Q Consensus 608 ilka~~k~l~~~~k~dp~kl~~e~e~le~ 636 (776)
+|..|++-.. ++--+.++++.|-+.|..
T Consensus 32 ~LeeR~~~I~-~~Ld~Ae~~r~eA~~l~~ 59 (154)
T PRK06568 32 SLDAKILEVQ-EKVLKAEKLKEDAALLFE 59 (154)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4455554332 112233444444444433
No 107
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.48 E-value=37 Score=42.24 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004051 638 HREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEK 687 (776)
Q Consensus 638 q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~~ 687 (776)
.++.+++|+.+.+..++.+++..++|..|+.+.-+.-|+.++..|.+..+
T Consensus 541 ~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 541 QEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555444444444444434434444444444443
No 108
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=61.21 E-value=0.89 Score=42.19 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=44.6
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
-+|+|+.+|..|++.. ++-.|+++..|.+-.....+-+.|.-| +-+||-|+-.+.
T Consensus 35 ~~pdYy~vI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~lm~~N---a~~yN~~~s~i~ 89 (103)
T cd05517 35 LYPDYYAVIKEPIDLK--TIAQRIQSGYYKSIEDMEKDLDLMVKN---AKTFNEPGSQVY 89 (103)
T ss_pred CCCCHHHHcCCCcCHH--HHHHHHCcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999988 899999999999888887666666544 788997764444
No 109
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=60.93 E-value=0.85 Score=41.91 Aligned_cols=55 Identities=7% Similarity=0.061 Sum_probs=43.4
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|||+.+|-.||+.+ ++-.++++..|.|-+.-..+-..| +.++-.||-++-.+.
T Consensus 29 ~~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~D~~li---~~Na~~yN~~~s~i~ 83 (97)
T cd05505 29 EAEDYKKVITNPMDLQ--TMQTKCSCGSYSSVQEFLDDMKLV---FSNAEKYYENGSYVL 83 (97)
T ss_pred hcccHHHHcCCcCCHH--HHHHHHcCCCCCCHHHHHHHHHHH---HHHHHHHCCCCCHHH
Confidence 4799999999999988 899999999999988875555554 445888997764433
No 110
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=60.34 E-value=0.88 Score=43.85 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=46.8
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
..|+|+.+|..|++.. ++-.||.+.+|.+-++-..+-+.|..| |-.||-+.-.+.
T Consensus 57 ~~p~Y~~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~Li~~N---a~~yN~~~s~i~ 111 (128)
T cd05529 57 WYPDYWNRVPVPMDLE--TIRSRLENRYYRSLEALRHDVRLILSN---AETFNEPNSEIA 111 (128)
T ss_pred cCCcHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 5799999999999988 899999999999988887777777666 888997765555
No 111
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=59.01 E-value=6.4 Score=47.29 Aligned_cols=12 Identities=33% Similarity=0.302 Sum_probs=6.8
Q ss_pred CCChhHHHHHHH
Q 004051 621 KRDPEKLRIERE 632 (776)
Q Consensus 621 k~dp~kl~~e~e 632 (776)
--||-|+-+|.-
T Consensus 1351 wsdpskipqevl 1362 (1463)
T PHA03308 1351 WSDPSKIPQEVL 1362 (1463)
T ss_pred cCCcccchHHHH
Confidence 346666665543
No 112
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=58.70 E-value=1 Score=41.86 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=45.1
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
..|+|+.+|..|++.. ++-.+|++..|.+-+....+-+.|.-| +.+||-+.-.+.
T Consensus 35 ~~pdYy~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~l~~~N---a~~yN~~~s~i~ 89 (105)
T cd05515 35 EYPDYYDVIKKPIDME--KIRSKIEGNQYQSLDDMVSDFVLMFDN---ACKYNEPDSQIY 89 (105)
T ss_pred cCCcHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3689999999999887 899999999999998887776666555 888997764444
No 113
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=58.11 E-value=0.57 Score=44.18 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCccc
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~ 93 (776)
-+|+|+.+|..||+.. ++-.|+++..|.+-+....+-+.|--| |-.||-+.
T Consensus 32 ~~pdY~~vI~~PmdL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~ 82 (112)
T cd05528 32 EVPDYYEIIKQPMDLQ--TILQKLDTHQYLTAKDFLKDIDLIVTN---ALEYNPDR 82 (112)
T ss_pred ccCcHHHHHcCCCCHH--HHHHHHcCCCcCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 3799999999999987 899999999999998887666666544 78888663
No 114
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=57.87 E-value=6 Score=49.19 Aligned_cols=48 Identities=54% Similarity=0.626 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 625 EKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQA 681 (776)
Q Consensus 625 ~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~ 681 (776)
-||-+.|||+ -||+|-|||.||-|++.|.++ -|..+.||+||++.|++
T Consensus 578 SKLAkKRee~-----~ek~RReaEq~~reerERer~----~e~~rerer~~~~~r~~ 625 (982)
T PF03154_consen 578 SKLAKKREER-----VEKARREAEQRAREERERERE----REREREREREREAERAA 625 (982)
T ss_pred cHHhhhhHHH-----HHHHHhhhhccchhhhhhccc----ccchhhhhhhhhhhhhh
Confidence 5777766664 356777888777665555332 22233444444444444
No 115
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=57.70 E-value=53 Score=34.11 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=14.8
Q ss_pred hcCCCCChhHHHHHHHHHHHHHH
Q 004051 617 EKGEKRDPEKLRIEREELERRHR 639 (776)
Q Consensus 617 ~~~~k~dp~kl~~e~e~le~~q~ 639 (776)
..-.+.||..+.+..|.++...+
T Consensus 68 ~~~~~~dpd~v~~rqEa~eaAR~ 90 (190)
T PF06936_consen 68 DAAAKKDPDVVVRRQEAMEAARR 90 (190)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHH
T ss_pred hhhhhcChhHHHHHHHHHHHHHH
Confidence 33457888888777776664433
No 116
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=57.67 E-value=1.7e+02 Score=31.69 Aligned_cols=20 Identities=45% Similarity=0.493 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004051 665 AEAKRKRELEREAARQALQM 684 (776)
Q Consensus 665 ~e~~~~re~er~~ar~~l~~ 684 (776)
.+.+++|+.+++++.+..++
T Consensus 195 ~e~~~~r~~~~~~~~~~~~e 214 (264)
T PF13904_consen 195 EEQQQKREEEREKEQQKQQE 214 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444433333
No 117
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=56.49 E-value=1.2 Score=40.88 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=44.8
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
-.|+|+.+|..|++.. ++-.|+++..|.+...-..+-+.|--| |-.||-+.-.+.
T Consensus 34 ~~pdY~~~I~~P~dL~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---~~~yn~~~s~~~ 88 (102)
T cd05499 34 NIPNYFSIIKKPMDLG--TISKKLQNGQYQSAKEFERDVRLIFKN---CYTFNPEGTDVY 88 (102)
T ss_pred CCCCHHHHhcCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999988887776666555 788997764444
No 118
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.86 E-value=57 Score=38.51 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 004051 413 ALRKLLDDYL 422 (776)
Q Consensus 413 eL~~~V~~~L 422 (776)
.|++.+..||
T Consensus 83 nlrrIiagyl 92 (489)
T PF05262_consen 83 NLRRIIAGYL 92 (489)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 119
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=55.70 E-value=1.3 Score=41.32 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|.+|++.. ++-.+|.+ |.+......+-+.|.-| +-.||-++-.+.
T Consensus 36 ~~pdYy~iI~~PmdL~--tI~~kl~~--Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 88 (106)
T cd05521 36 DYPDYYKIIKNPLSLN--TVKKRLPH--YTNAQEFVNDLAQIPWN---ARLYNTKGSVIY 88 (106)
T ss_pred cCccHHHHhcCCCCHH--HHHHHHHc--CCCHHHHHHHHHHHHHH---HHHHcCCCCHHH
Confidence 6799999999999887 89999998 76777666666665444 778997765555
No 120
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=55.18 E-value=87 Score=32.04 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004051 626 KLRIEREELERRHREEKARLQ 646 (776)
Q Consensus 626 kl~~e~e~le~~q~eekarl~ 646 (776)
.+|.|+|+.|++++||..|+.
T Consensus 36 ReQkErEE~ER~ekEE~er~~ 56 (171)
T PF05672_consen 36 REQKEREEQERLEKEEQERRK 56 (171)
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 457788888888888877654
No 121
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=54.97 E-value=92 Score=32.22 Aligned_cols=62 Identities=31% Similarity=0.349 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 004051 629 IEREELERRHREEKARLQAEAKA-AEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVD 690 (776)
Q Consensus 629 ~e~e~le~~q~eekarl~a~~~a-ae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~~t~~ 690 (776)
.+-+++-...+++..+|-++|++ |+.-.++|+.+|+...++-..--+-++|+.|...++.+.
T Consensus 22 ~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~ 84 (198)
T PRK01558 22 RLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLISFEKSIK 84 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544555555555544443 222233333344433333334444556666666666553
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=54.92 E-value=47 Score=41.85 Aligned_cols=21 Identities=52% Similarity=0.722 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 637 RHREEKARLQAEAKAAEEARRKAE 660 (776)
Q Consensus 637 ~q~eekarl~a~~~aae~a~r~~~ 660 (776)
+.++++|+++.+ +|+|||++|
T Consensus 841 q~~~~~a~~~~~---~ee~~r~~e 861 (1018)
T KOG2002|consen 841 QEKEEEALIEKE---LEEARRKEE 861 (1018)
T ss_pred HHHHHHHHHHHH---HHHHHHHHH
Confidence 335566666544 566777755
No 123
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=54.72 E-value=7.7 Score=48.12 Aligned_cols=78 Identities=37% Similarity=0.357 Sum_probs=46.4
Q ss_pred HHHhhccchhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 597 AALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELERE 676 (776)
Q Consensus 597 aa~lk~rfadtilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~ 676 (776)
|++-|.+=++|=--||- ++--.---|+||-..++.+ +|||+-+|+++|+|+.+|-+ +++.|..|+||.|||
T Consensus 784 a~~~~h~d~~~nS~~rs--d~~~~Pl~p~~~akl~~~~-----~~kak~aa~~ra~er~~~~r--~re~e~~~e~e~~~~ 854 (1229)
T KOG2133|consen 784 ARFRKHLDRGTNSCARS--DLYFEPLSPSKLAKLRSNV-----EEKAKRAAEQRARERSERER--ERETELEREREVERE 854 (1229)
T ss_pred HHHHHHhcccccccccc--ccccCCCCcccccccccch-----HHHHHHHHHHHHHHhhhhhh--hhhhcccccccccch
Confidence 33334444444444443 2222223344444333333 57899999999999877754 466677777788888
Q ss_pred HHHHHHH
Q 004051 677 AARQALQ 683 (776)
Q Consensus 677 ~ar~~l~ 683 (776)
+-|-+-.
T Consensus 855 aersak~ 861 (1229)
T KOG2133|consen 855 AERSAKE 861 (1229)
T ss_pred HHhhhhh
Confidence 7777665
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=53.91 E-value=55 Score=38.94 Aligned_cols=8 Identities=38% Similarity=0.928 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 004051 414 LRKLLDDY 421 (776)
Q Consensus 414 L~~~V~~~ 421 (776)
|++++.+|
T Consensus 422 LKnlFSKy 429 (940)
T KOG4661|consen 422 LKNLFSKY 429 (940)
T ss_pred HHHHHHHh
Confidence 44444444
No 125
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=53.61 E-value=1.3e+02 Score=30.53 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.0
Q ss_pred cchhhHHHHHHHHhh
Q 004051 603 RFADTILKAREKALE 617 (776)
Q Consensus 603 rfadtilka~~k~l~ 617 (776)
++--.+|..|.....
T Consensus 47 kPI~~~l~~R~~~I~ 61 (184)
T CHL00019 47 GVLSDLLDNRKQTIL 61 (184)
T ss_pred hHHHHHHHHHHHHHH
Confidence 555566677776553
No 126
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=53.52 E-value=1.7 Score=40.61 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=43.9
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|||+..|..|++.. ++-.+|++..|.+-+....+-..|--| +-.||-++-.+.
T Consensus 36 ~~pdYy~iI~~Pmdl~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 90 (107)
T cd05516 36 ELPEYYELIRKPVDFK--KIKERIRNHKYRSLEDLEKDVMLLCQN---AQTFNLEGSLIY 90 (107)
T ss_pred cCCCHHHHcCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999988 899999999999888887666666544 778887754444
No 127
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=52.75 E-value=51 Score=36.65 Aligned_cols=8 Identities=38% Similarity=0.779 Sum_probs=6.9
Q ss_pred CCeEEEEc
Q 004051 396 EDELEIDI 403 (776)
Q Consensus 396 ~dEIEIDI 403 (776)
.|.|+|+|
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 78888888
No 128
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=52.10 E-value=84 Score=31.75 Aligned_cols=17 Identities=65% Similarity=0.784 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004051 625 EKLRIEREELERRHREE 641 (776)
Q Consensus 625 ~kl~~e~e~le~~q~ee 641 (776)
+|-++..++.+++.+||
T Consensus 69 Ek~r~k~~E~err~~EE 85 (157)
T PF15236_consen 69 EKRRQKQEEEERRRREE 85 (157)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44445555555554443
No 129
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.22 E-value=82 Score=35.32 Aligned_cols=63 Identities=27% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc
Q 004051 629 IEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINEN 694 (776)
Q Consensus 629 ~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~~t~~~~~~ 694 (776)
+..|+|-++.+||+++||++..+.....+..| ++-+..-||+....|+++-.-=|-.+-+++-
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke---eesq~LnrELaE~layqq~L~~eyQatf~eq 192 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKE---EESQTLNRELAEALAYQQELNDEYQATFVEQ 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 46799999999999999999999876665444 3334455677767777766666655555543
No 130
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=50.97 E-value=84 Score=32.63 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Q 004051 644 RLQAEAKAAEEARRKAEAE----AAAEAKRKRELEREAARQALQMMEK 687 (776)
Q Consensus 644 rl~a~~~aae~a~r~~~~~----~~~e~~~~re~er~~ar~~l~~m~~ 687 (776)
.+.+...|.++||++.+++ |+..+..++++|.|+=|++|.+-|+
T Consensus 77 ~v~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~EEEKRrqkie~we~ 124 (190)
T PF06936_consen 77 VVVRRQEAMEAARRRMQEELDAKAEEYKEKQKQEEEEKRRQKIEMWES 124 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455444433 2223333455555666666655444
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=50.83 E-value=72 Score=37.98 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 004051 638 HREEKARLQAE 648 (776)
Q Consensus 638 q~eekarl~a~ 648 (776)
|+.+..|++.|
T Consensus 627 ~RirE~rerEq 637 (940)
T KOG4661|consen 627 QRIREEREREQ 637 (940)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 132
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=50.14 E-value=1e+02 Score=32.07 Aligned_cols=11 Identities=18% Similarity=0.450 Sum_probs=5.8
Q ss_pred hhHHHHHHHHh
Q 004051 606 DTILKAREKAL 616 (776)
Q Consensus 606 dtilka~~k~l 616 (776)
..+|..|++..
T Consensus 74 ~~~L~~R~~~I 84 (205)
T PRK06231 74 QRFLNKRKELI 84 (205)
T ss_pred HHHHHHHHHHH
Confidence 34555666544
No 133
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.09 E-value=2e+02 Score=32.47 Aligned_cols=41 Identities=29% Similarity=0.507 Sum_probs=27.7
Q ss_pred hHHHHHHHhhccchhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHH
Q 004051 592 DKLYRAALLRNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEK 642 (776)
Q Consensus 592 ~k~~raa~lk~rfadtilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eek 642 (776)
+|.|++| |+.+|.++-.-+...+ |-||+=+|-+|.+|.|-+
T Consensus 62 e~qlk~a------a~~llq~kirk~~e~~----eglr~i~es~~e~q~e~~ 102 (401)
T PF06785_consen 62 EKQLKTA------AGQLLQTKIRKITEKD----EGLRKIRESVEERQQESE 102 (401)
T ss_pred HHHHHHH------HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHH
Confidence 6677776 6778877766554332 447888888888877644
No 134
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.99 E-value=1.1e+02 Score=30.56 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCCchHHHHHHHhhccchhhHHHHHHH---------HhhcCCCCChhHHHHHHHHH
Q 004051 578 HEGESAPSERQVSPDKLYRAALLRNRFADTILKAREK---------ALEKGEKRDPEKLRIEREEL 634 (776)
Q Consensus 578 ~~~~~~~~~~~~sp~k~~raa~lk~rfadtilka~~k---------~l~~~~k~dp~kl~~e~e~l 634 (776)
..|+....-.+|+||+.=-+=-|...|.+....-|++ +|...++-|++|++.-..|+
T Consensus 33 ~~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI 98 (143)
T PRK11546 33 GHGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEM 98 (143)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555678999999888888889999888777764 34578889988776543333
No 135
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.95 E-value=45 Score=38.28 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=11.2
Q ss_pred hcCCCCChhHHHHHHHHHHHH
Q 004051 617 EKGEKRDPEKLRIEREELERR 637 (776)
Q Consensus 617 ~~~~k~dp~kl~~e~e~le~~ 637 (776)
..--+.+-.+.|++.|+--++
T Consensus 361 S~~~k~kt~~~RQ~~~e~~~K 381 (440)
T KOG2357|consen 361 SKDAKAKTDKNRQRVEEEFLK 381 (440)
T ss_pred hHHHHhhhhhhHHHHHHHHHH
Confidence 344455666676655543333
No 136
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.93 E-value=1.4e+02 Score=37.41 Aligned_cols=8 Identities=25% Similarity=0.110 Sum_probs=3.5
Q ss_pred hhHHHHHH
Q 004051 606 DTILKARE 613 (776)
Q Consensus 606 dtilka~~ 613 (776)
+.|-.|++
T Consensus 497 ~ii~~A~~ 504 (771)
T TIGR01069 497 FIIEQAKT 504 (771)
T ss_pred HHHHHHHH
Confidence 34444444
No 137
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.44 E-value=86 Score=39.19 Aligned_cols=11 Identities=27% Similarity=0.175 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q 004051 675 REAARQALQMM 685 (776)
Q Consensus 675 r~~ar~~l~~m 685 (776)
.+.+|++|.++
T Consensus 609 ~~~~~~~l~~~ 619 (782)
T PRK00409 609 LIEARKRLNKA 619 (782)
T ss_pred HHHHHHHHHHh
Confidence 33444444443
No 138
>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers. Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....
Probab=49.17 E-value=22 Score=35.08 Aligned_cols=39 Identities=41% Similarity=0.537 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 645 LQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQ 683 (776)
Q Consensus 645 l~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~ 683 (776)
||.-.+|||+.|+-.||+--.....+||.+|+.++.|+.
T Consensus 47 IqkKLeAAEERRKs~Ea~~l~~laekreh~~ev~~Ka~E 85 (140)
T PF00836_consen 47 IQKKLEAAEERRKSQEAQVLKKLAEKREHEREVLQKALE 85 (140)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788877777766555556677777777666654
No 139
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=48.54 E-value=2.6 Score=50.38 Aligned_cols=75 Identities=8% Similarity=-0.058 Sum_probs=66.2
Q ss_pred ccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHH
Q 004051 223 WVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299 (776)
Q Consensus 223 ~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~~F 299 (776)
..|..-++ ...+|+||.+++-||.+..+.+++..+.|.....|..|..+.|.|+..||.....++..+..|.+.+
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 34444333 4579999999999999999999999999999999999999999999999999999999998887643
No 140
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=48.47 E-value=1.8 Score=40.42 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=45.1
Q ss_pred CCCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
..+|+|+.+|..|++.. ++-.+|.+..|.+-+....+-..|.-| +-.||.+.-.+.
T Consensus 36 ~~~pdYy~~I~~P~dL~--tI~~kl~~~~Y~s~~ef~~D~~l~f~N---a~~yn~~~S~i~ 91 (106)
T cd05525 36 KKNPDYYERITDPVDLS--TIEKQILTGYYKTPEAFDSDMLKVFRN---AEKYYGRKSPIG 91 (106)
T ss_pred ccCCchhhhCCCCcCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 35799999999999987 899999999999988887776666555 778887764444
No 141
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=48.40 E-value=5.2 Score=38.62 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCCCCCC-CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCC
Q 004051 31 SKGHSSGF-VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDG 85 (776)
Q Consensus 31 ~~g~~~~~-~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~ 85 (776)
-+||-||| ||+| +|+.||.-+ --.|.-+|..|.. ..+.+..|..|
T Consensus 4 LRGhtSGlAvPty--VvD~PGGgG----KvPl~P~Yli~~~----~~~~vlrNyeG 49 (127)
T PF12544_consen 4 LRGHTSGLAVPTY--VVDAPGGGG----KVPLMPNYLISQS----GDKVVLRNYEG 49 (127)
T ss_dssp TCTTC-GGG--EE--EEEETTTTE----EEE-----EEEEE----SSEEEEE-TTS
T ss_pred ccccccccccceE--EEECCCCCC----CcccCCceEEecC----CCEEEEECCCC
Confidence 47999999 9999 999997322 2235555555433 34566667654
No 142
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=48.28 E-value=1.3e+02 Score=31.24 Aligned_cols=21 Identities=38% Similarity=0.305 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004051 664 AAEAKRKRELEREAARQALQM 684 (776)
Q Consensus 664 ~~e~~~~re~er~~ar~~l~~ 684 (776)
=.+.+++-+.+-|++|++.++
T Consensus 78 ~~~~~~e~~~~~e~~r~~fek 98 (228)
T PRK06800 78 FQEHVQQQMKEIEAARQQFQK 98 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566665554
No 143
>smart00297 BROMO bromo domain.
Probab=47.65 E-value=2.3 Score=38.68 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=41.4
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcc
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~ 92 (776)
.|+|+..|..|++.. ++-.||+++.|.+.+.-..+-+.|.-| +..||-+
T Consensus 37 ~p~Y~~~i~~P~dl~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---a~~~n~~ 85 (107)
T smart00297 37 APDYYDIIKKPMDLS--TIKKKLENGKYSSVEEFVADVQLMFSN---AKTYNGP 85 (107)
T ss_pred ccCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 589999999999888 899999999999988887777777655 6778844
No 144
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=47.61 E-value=2e+02 Score=28.43 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q 004051 608 ILKAREKAL 616 (776)
Q Consensus 608 ilka~~k~l 616 (776)
++..|+...
T Consensus 50 ~l~~R~~~I 58 (156)
T CHL00118 50 VLDERKEYI 58 (156)
T ss_pred HHHHHHHHH
Confidence 345555433
No 145
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=47.46 E-value=2e+02 Score=28.09 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=5.1
Q ss_pred hHHHHHHHHh
Q 004051 607 TILKAREKAL 616 (776)
Q Consensus 607 tilka~~k~l 616 (776)
.+|..|.+..
T Consensus 31 ~~l~~R~~~I 40 (156)
T PRK05759 31 KALEERQKKI 40 (156)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 146
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=47.41 E-value=5.3 Score=48.95 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=52.6
Q ss_pred CCCccccCCCChhhhcCCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHHhhh
Q 004051 228 PVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQY--------------S----------DPLA------FAADVRLTFSN 277 (776)
Q Consensus 228 PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y--------------~----------S~~e------F~~DvrLIF~N 277 (776)
++| +..+|.|..+...|.+|+|++..|.+..| . ++.+ ..+-+.+|-.|
T Consensus 89 ~~d--~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~a 166 (1113)
T KOG0644|consen 89 MLD--KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCA 166 (1113)
T ss_pred CcC--CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccccc
Confidence 445 33789999999999999999999998777 2 3333 66778899999
Q ss_pred hhhcCCCCCHHHHHHHHHHHH
Q 004051 278 AMTYNPPQNDVHIMADTLRKY 298 (776)
Q Consensus 278 A~~YN~~gS~Vy~~A~~Le~~ 298 (776)
|+.+|.||+ +|+-++.+.++
T Consensus 167 t~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 167 TFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred eeeecCcHH-HHHHHHHHHHH
Confidence 999999999 55555544443
No 147
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=47.25 E-value=1.6e+02 Score=29.49 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 624 PEKLRIEREELERRHREEKARLQAEA 649 (776)
Q Consensus 624 p~kl~~e~e~le~~q~eekarl~a~~ 649 (776)
-++|..+.+++-+.-+.|...|.+++
T Consensus 54 A~~l~~e~e~~L~~Ar~EA~~Ii~~A 79 (154)
T PRK06568 54 AALLFEQTNAQIKKLETLRSQMIEES 79 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 148
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.89 E-value=96 Score=35.91 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=14.0
Q ss_pred ccccCCCCccccCCCChhhhcCCC-CCH
Q 004051 223 WVFNTPVDVMKLNIPDYFTVIKHP-MDL 249 (776)
Q Consensus 223 ~~F~~PVdp~k~~~PDYy~iIk~P-MDL 249 (776)
..|..+....-..+|+.|..|+.| |+.
T Consensus 66 sd~es~~glg~nsfp~~yse~r~~nm~g 93 (502)
T KOG0982|consen 66 SDFESQMGLGLNSFPKRYSELRERNMSG 93 (502)
T ss_pred cccccccCcccccchHHHHHHhcCCCCC
Confidence 344444443333567766666655 443
No 149
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.46 E-value=87 Score=33.77 Aligned_cols=9 Identities=44% Similarity=0.364 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 004051 663 AAAEAKRKR 671 (776)
Q Consensus 663 ~~~e~~~~r 671 (776)
+++|+.+++
T Consensus 149 ~~eEae~k~ 157 (299)
T KOG3054|consen 149 LAEEAELKE 157 (299)
T ss_pred HHHHHHHhH
Confidence 455555554
No 150
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=45.91 E-value=2.1 Score=39.28 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccc
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQ 94 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~ 94 (776)
..|+|+..|..|++.. ++-.++.++.|.|...-..+-+.|.-| |-.||-+.-
T Consensus 34 ~~p~Y~~~I~~Pmdl~--~I~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yn~~~s 85 (102)
T cd05498 34 GLHDYHDIIKHPMDLS--TIKKKLDNREYADAQEFAADVRLMFSN---CYKYNPPDH 85 (102)
T ss_pred CCCcHHHHccCCCcHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCC
Confidence 4699999999999887 899999999999888877666666555 778886653
No 151
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=45.27 E-value=2.1e+02 Score=28.77 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHhh
Q 004051 605 ADTILKAREKALE 617 (776)
Q Consensus 605 adtilka~~k~l~ 617 (776)
--.+|..|++.+.
T Consensus 44 I~~~l~~R~~~I~ 56 (174)
T PRK07352 44 LGKILEERREAIL 56 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666766553
No 152
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=45.15 E-value=1.2e+02 Score=35.40 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhhc
Q 004051 360 TNEEKRILSTELEALL 375 (776)
Q Consensus 360 T~eEK~kL~~~I~~Lp 375 (776)
+.+++..+.+.+..|-
T Consensus 80 d~e~~~~~qqe~~~Ly 95 (429)
T PRK00247 80 DEASIRELQQKQKDLN 95 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3455666655555443
No 153
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=45.02 E-value=1.1e+02 Score=35.29 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCcccccccHHHHHh
Q 004051 626 KLRIEREELERRHR-EEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELERE-AARQALQMMEKTVDINENSRFMEDLEM 703 (776)
Q Consensus 626 kl~~e~e~le~~q~-eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~-~ar~~l~~m~~t~~~~~~~~~~~~le~ 703 (776)
|||-|.|+|..... .+|.--+..++-+++.+-.+|+-+...+|.++|+||. |-=+.|.+-|+..+.+ .-.|+.++-+
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemd-eery~Ne~~~ 335 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMD-EERYLNEFVD 335 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhhhhc
Confidence 56667777765422 2222222222233444445565666777788888874 3334444445555554 2334444444
Q ss_pred hhc
Q 004051 704 LRI 706 (776)
Q Consensus 704 l~~ 706 (776)
.|.
T Consensus 336 ~g~ 338 (552)
T KOG2129|consen 336 FGD 338 (552)
T ss_pred cCC
Confidence 443
No 154
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=44.95 E-value=1.8e+02 Score=30.39 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=12.8
Q ss_pred hhHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 004051 606 DTILKAREKALEKGEKRDPEKLRIEREELE 635 (776)
Q Consensus 606 dtilka~~k~l~~~~k~dp~kl~~e~e~le 635 (776)
..||..|+..... +-.+-++++.|-+++.
T Consensus 79 ~~vLe~R~~~I~~-~L~~Ae~~k~eAe~~~ 107 (204)
T PRK09174 79 GGIIETRRDRIAQ-DLDQAARLKQEADAAV 107 (204)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4556666654432 1223344444444333
No 155
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=44.51 E-value=1.5e+02 Score=32.85 Aligned_cols=12 Identities=0% Similarity=0.002 Sum_probs=6.0
Q ss_pred CchHHHHHHHhh
Q 004051 590 SPDKLYRAALLR 601 (776)
Q Consensus 590 sp~k~~raa~lk 601 (776)
.|...+..|+..
T Consensus 204 ~~p~~v~~Ai~~ 215 (317)
T TIGR01932 204 NYSDELSESIYN 215 (317)
T ss_pred CCCHHHHHHHHH
Confidence 344456555543
No 156
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=44.32 E-value=2.1e+02 Score=29.17 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=6.3
Q ss_pred hhHHHHHHHHh
Q 004051 606 DTILKAREKAL 616 (776)
Q Consensus 606 dtilka~~k~l 616 (776)
..||..|....
T Consensus 57 ~~~l~~R~~~I 67 (181)
T PRK13454 57 GAVLAERQGTI 67 (181)
T ss_pred HHHHHHHHHHH
Confidence 45566666554
No 157
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=44.02 E-value=3.3 Score=39.14 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=41.5
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcc
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~ 92 (776)
-+|+|+.+|..||+.+ ++-.++.+..|.+-+.-..+-+.|--| |-.||-+
T Consensus 37 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~Li~~N---~~~yN~~ 86 (112)
T cd05510 37 EAPDYYDIIKKPMDLG--TMLKKLKNLQYKSKAEFVDDLNLIWKN---CLLYNSD 86 (112)
T ss_pred hcCCHHHHhcCccCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 3799999999999988 899999999999988886666665544 8889965
No 158
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=44.00 E-value=1.4e+02 Score=35.79 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004051 636 RRHREEKARLQAEAKAAEEARRK 658 (776)
Q Consensus 636 ~~q~eekarl~a~~~aae~a~r~ 658 (776)
+-..||-.-+.++.++++++|+.
T Consensus 238 kvk~~e~~~~dee~k~i~~~rke 260 (782)
T PF07218_consen 238 KVKEEEEKELDEEHKEIEEKRKE 260 (782)
T ss_pred HHHHHHHhHHhHHHHHHHHHHHH
Confidence 44455555677788887777653
No 159
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=43.71 E-value=15 Score=40.73 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHhhhh
Q 004051 259 GQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 259 ~~Y~S~~eF~~DvrLIF~NA 278 (776)
..|.-+.=|..|+-.+..|-
T Consensus 156 ~dY~VPk~F~dDlF~y~g~e 175 (407)
T KOG2130|consen 156 EDYSVPKYFRDDLFQYLGEE 175 (407)
T ss_pred hhcCcchhhhHHHHHhcCcc
Confidence 35777777888876666654
No 160
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=43.29 E-value=2.5 Score=38.63 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..|++.+ ++-.||.+..|.+-..-..+-+.|--| +..||-+.-.+.
T Consensus 30 ~p~Y~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 83 (97)
T cd05503 30 VPGYRKIIKKPMDFS--TIREKLESGQYKTLEEFAEDVRLVFDN---CETFNEDDSEVG 83 (97)
T ss_pred cCCHHHHhCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999988 899999999999888876665555444 788987654443
No 161
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.58 E-value=2.6 Score=38.93 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
..|+|+.+|..|++.. ++..||++..|.+...-..+-+.|.-| +-.||-|.-.+.
T Consensus 35 ~~pdYy~iIk~Pmdl~--~I~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yn~~~s~i~ 89 (103)
T cd05519 35 LYPDYYVIIKRPIALD--QIKRRIEGRAYKSLEEFLEDFHLMFAN---ARTYNQEGSIVY 89 (103)
T ss_pred CCcCHHHHcCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4699999999999887 899999999999988887776666555 778886654443
No 162
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=42.40 E-value=1.5e+02 Score=30.82 Aligned_cols=58 Identities=29% Similarity=0.364 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhc
Q 004051 630 EREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKR-------------ELEREAARQALQMMEKT 688 (776)
Q Consensus 630 e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~r-------------e~er~~ar~~l~~m~~t 688 (776)
+.+.|...||+=-.|+.++..+||..-|+--.+.+.|.++.. |+||+.-++ +.+|||+
T Consensus 85 ~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq-~lE~Ek~ 155 (192)
T PF09727_consen 85 ELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQ-QLEQEKA 155 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 667788889999999999999999999887766666655543 677776665 4455553
No 163
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=42.11 E-value=1.8e+02 Score=29.15 Aligned_cols=30 Identities=43% Similarity=0.577 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 004051 628 RIEREELERRHREEKARL-QAEAKAAEEARR 657 (776)
Q Consensus 628 ~~e~e~le~~q~eekarl-~a~~~aae~a~r 657 (776)
+.++++|++...+.+.++ +||.|.|++..+
T Consensus 75 r~~~eELe~ileen~rkvEEAQrk~aeEr~~ 105 (149)
T PF15346_consen 75 RKKREELEKILEENRRKVEEAQRKLAEERLR 105 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333 233344443333
No 164
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.06 E-value=2.7 Score=38.76 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=43.1
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccc
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQ 94 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~ 94 (776)
..|+|+.+|..|++.. ++-.|+.+..|.+.+....+-+.|.-| |-.||-+.-
T Consensus 35 ~~p~Y~~~I~~P~dL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s 86 (103)
T cd05500 35 NIPHYPTIIKKPMDLG--TIERKLKSNVYTSVEEFTADFNLMVDN---CLTFNGPEH 86 (103)
T ss_pred cCCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCC
Confidence 5699999999999887 899999999999988887777776655 778886643
No 165
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=41.83 E-value=2.1e+02 Score=30.70 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q 004051 608 ILKAREKAL 616 (776)
Q Consensus 608 ilka~~k~l 616 (776)
++..|++..
T Consensus 33 ~l~eR~~~I 41 (250)
T PRK14474 33 VMKKRQQRI 41 (250)
T ss_pred HHHHHHHHH
Confidence 445555433
No 166
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=41.30 E-value=1e+02 Score=34.27 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=4.6
Q ss_pred cchhhHH
Q 004051 603 RFADTIL 609 (776)
Q Consensus 603 rfadtil 609 (776)
.|+|.+.
T Consensus 242 ~l~D~~~ 248 (321)
T PF07946_consen 242 YLIDKLA 248 (321)
T ss_pred HHHHHhh
Confidence 4677776
No 167
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=41.21 E-value=2.4e+02 Score=28.58 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=6.5
Q ss_pred hHHHHHHHHhh
Q 004051 607 TILKAREKALE 617 (776)
Q Consensus 607 tilka~~k~l~ 617 (776)
.+|..|++...
T Consensus 54 ~~L~~R~~~I~ 64 (184)
T PRK13455 54 GMLDKRAEGIR 64 (184)
T ss_pred HHHHHHHHHHH
Confidence 45667776443
No 168
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=40.97 E-value=1.3e+02 Score=27.18 Aligned_cols=13 Identities=54% Similarity=0.629 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 004051 672 ELEREAARQALQM 684 (776)
Q Consensus 672 e~er~~ar~~l~~ 684 (776)
|+|-|.-|.||.+
T Consensus 71 EkElEERrKALe~ 83 (86)
T PF15437_consen 71 EKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHhhhc
Confidence 4444445666643
No 169
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=40.95 E-value=2.3e+02 Score=28.15 Aligned_cols=7 Identities=43% Similarity=0.620 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 004051 608 ILKAREK 614 (776)
Q Consensus 608 ilka~~k 614 (776)
+|..|+.
T Consensus 36 ~l~~R~~ 42 (164)
T PRK14471 36 AVKERED 42 (164)
T ss_pred HHHHHHH
Confidence 3444544
No 170
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=40.44 E-value=3.4e+02 Score=26.53 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004051 666 EAKRKRELEREAARQALQM 684 (776)
Q Consensus 666 e~~~~re~er~~ar~~l~~ 684 (776)
+++..-+.+++.|+..|..
T Consensus 96 ~A~~~~~~~~~~a~~~l~~ 114 (141)
T PRK08476 96 AKKAELESKYEAFAKQLAN 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555554443
No 171
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=40.39 E-value=19 Score=42.43 Aligned_cols=7 Identities=29% Similarity=0.240 Sum_probs=2.6
Q ss_pred ccccccc
Q 004051 76 RKCISLN 82 (776)
Q Consensus 76 rk~i~~n 82 (776)
|+.-..+
T Consensus 38 r~~~ek~ 44 (739)
T KOG2140|consen 38 RKIKEKD 44 (739)
T ss_pred ccccccc
Confidence 3333333
No 172
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.15 E-value=5e+02 Score=30.59 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=19.4
Q ss_pred CCchHHHHHHHh-----hccchhhHH---HHHHHHh
Q 004051 589 VSPDKLYRAALL-----RNRFADTIL---KAREKAL 616 (776)
Q Consensus 589 ~sp~k~~raa~l-----k~rfadtil---ka~~k~l 616 (776)
..|+-+=|||-- .+++|--.| +-|++|.
T Consensus 73 FDpeaLERaAKAlrein~s~~aK~vfel~r~qE~Tr 108 (630)
T KOG0742|consen 73 FDPEALERAAKALREINHSPYAKDVFELARMQEQTR 108 (630)
T ss_pred CChHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHH
Confidence 458888888743 678887654 5677765
No 173
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=40.00 E-value=2.9e+02 Score=27.80 Aligned_cols=6 Identities=33% Similarity=0.396 Sum_probs=2.4
Q ss_pred HHHHHH
Q 004051 609 LKAREK 614 (776)
Q Consensus 609 lka~~k 614 (776)
+..|+.
T Consensus 51 l~~R~~ 56 (167)
T PRK08475 51 YKSRIN 56 (167)
T ss_pred HHHHHH
Confidence 344443
No 174
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=39.69 E-value=2.4e+02 Score=30.00 Aligned_cols=7 Identities=57% Similarity=0.781 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 004051 608 ILKAREK 614 (776)
Q Consensus 608 ilka~~k 614 (776)
+|..|.+
T Consensus 33 ~l~~R~~ 39 (246)
T TIGR03321 33 AMDAREK 39 (246)
T ss_pred HHHHHHH
Confidence 3444444
No 175
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=39.59 E-value=2.3e+02 Score=28.11 Aligned_cols=11 Identities=36% Similarity=0.438 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 004051 672 ELEREAARQAL 682 (776)
Q Consensus 672 e~er~~ar~~l 682 (776)
+.|++.|+.+|
T Consensus 114 ~~ek~~a~~~l 124 (164)
T PRK14471 114 ESEKNAAMAEI 124 (164)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 176
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.54 E-value=83 Score=38.82 Aligned_cols=21 Identities=48% Similarity=0.639 Sum_probs=9.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHH
Q 004051 633 ELERRHREEK-ARLQAEAKAAE 653 (776)
Q Consensus 633 ~le~~q~eek-arl~a~~~aae 653 (776)
.||++..+|| +|.+|+.+||.
T Consensus 506 ~lEkQL~eErk~r~~ee~~aar 527 (697)
T PF09726_consen 506 SLEKQLQEERKARKEEEEKAAR 527 (697)
T ss_pred HHHHHHHHHHHHHhHHHHhhhh
Confidence 3444433333 44444444443
No 177
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=39.47 E-value=2.6e+02 Score=28.07 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=4.6
Q ss_pred hHHHHHHHHh
Q 004051 607 TILKAREKAL 616 (776)
Q Consensus 607 tilka~~k~l 616 (776)
.+|..|+...
T Consensus 45 ~~l~~R~~~I 54 (175)
T PRK14472 45 SALEEREKGI 54 (175)
T ss_pred HHHHHHHHHH
Confidence 3444555433
No 178
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.05 E-value=2.4e+02 Score=28.28 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 004051 608 ILKAREKAL 616 (776)
Q Consensus 608 ilka~~k~l 616 (776)
+|..|+...
T Consensus 44 ~l~~R~~~I 52 (173)
T PRK13460 44 ALDERASGV 52 (173)
T ss_pred HHHHHHHHH
Confidence 444555433
No 179
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=39.04 E-value=2e+02 Score=31.84 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCc
Q 004051 579 EGESAPSERQVSP 591 (776)
Q Consensus 579 ~~~~~~~~~~~sp 591 (776)
+|+=+-|+.-|-|
T Consensus 120 ~gdLFDFd~EV~P 132 (291)
T PF06098_consen 120 EGDLFDFDEEVKP 132 (291)
T ss_pred cccccchHhhhhh
Confidence 4555557777776
No 180
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=38.76 E-value=21 Score=39.55 Aligned_cols=9 Identities=22% Similarity=0.264 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 004051 298 YFEVRWKAI 306 (776)
Q Consensus 298 ~Fe~~~k~i 306 (776)
+|.+-|..+
T Consensus 163 ~F~dDlF~y 171 (407)
T KOG2130|consen 163 YFRDDLFQY 171 (407)
T ss_pred hhhHHHHHh
Confidence 444444443
No 181
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.69 E-value=2.5e+02 Score=28.25 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhh
Q 004051 674 EREAARQALQMMEK 687 (776)
Q Consensus 674 er~~ar~~l~~m~~ 687 (776)
..+++..|++-.+|
T Consensus 135 ~~~i~~lA~~~a~k 148 (175)
T PRK14472 135 RNEVADLAVKGAEK 148 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 182
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=38.66 E-value=3e+02 Score=27.08 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 004051 608 ILKAREKAL 616 (776)
Q Consensus 608 ilka~~k~l 616 (776)
+|..|+...
T Consensus 30 ~l~~R~~~I 38 (159)
T PRK09173 30 SLDARADRI 38 (159)
T ss_pred HHHHHHHHH
Confidence 455555433
No 183
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=38.52 E-value=2.5e+02 Score=28.26 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=4.5
Q ss_pred hHHHHHHHHh
Q 004051 607 TILKAREKAL 616 (776)
Q Consensus 607 tilka~~k~l 616 (776)
-+|..|+...
T Consensus 45 ~~l~~R~~~I 54 (173)
T PRK13453 45 DVMDKRERDI 54 (173)
T ss_pred HHHHHHHHHH
Confidence 3444555433
No 184
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=38.38 E-value=68 Score=36.62 Aligned_cols=63 Identities=33% Similarity=0.395 Sum_probs=45.9
Q ss_pred hhccchh---hHHHHHHHH---hhcCCCCChhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 600 LRNRFAD---TILKAREKA---LEKGEKRDPEKLRIEREELERR------HREEKARLQAEAKAAEEARRKAEAE 662 (776)
Q Consensus 600 lk~rfad---tilka~~k~---l~~~~k~dp~kl~~e~e~le~~------q~eekarl~a~~~aae~a~r~~~~~ 662 (776)
||.||=- .|++||.-+ |++-..-|-++=++-|+-|++. |-+|-+-|-+|+|.-|+++++++++
T Consensus 173 LKeRyY~v~r~l~kAr~~s~sdllk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~KkiEarkke~~~~ 247 (445)
T KOG2656|consen 173 LKERYYSVCRKLLKARAPSNSDLLKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKKIEARKKERLAE 247 (445)
T ss_pred HHHHHHHHHHHHHHccCCCchhhhhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6777754 477787654 6677778888888888888885 7777788888888777666554443
No 185
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=38.20 E-value=86 Score=28.86 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004051 258 SGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (776)
Q Consensus 258 ~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~ 308 (776)
...|.|..-|...+..|-.....++..+..+..+|..|...|++.|+.+..
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346888888888888887777777777889999999999999999986543
No 186
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=37.76 E-value=2.8e+02 Score=27.44 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=3.9
Q ss_pred chhhHHHHHH
Q 004051 604 FADTILKARE 613 (776)
Q Consensus 604 fadtilka~~ 613 (776)
.++.+-.|.+
T Consensus 58 I~~~l~~Ae~ 67 (156)
T CHL00118 58 IRKNLTKASE 67 (156)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 187
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=37.55 E-value=5.2e+02 Score=30.41 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 004051 669 RKRELEREAARQALQMM 685 (776)
Q Consensus 669 ~~re~er~~ar~~l~~m 685 (776)
..+-+||+|||.-..=|
T Consensus 407 ~~~~rErKAAkTLsAIL 423 (503)
T KOG4220|consen 407 MSLVRERKAAKTLSAIL 423 (503)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34467888998754433
No 188
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=37.50 E-value=5e+02 Score=27.11 Aligned_cols=38 Identities=39% Similarity=0.598 Sum_probs=27.8
Q ss_pred CCCCCchHHHHHHHhhccchhh--HHHHHHH-----Hhh-cCCCCC
Q 004051 586 ERQVSPDKLYRAALLRNRFADT--ILKAREK-----ALE-KGEKRD 623 (776)
Q Consensus 586 ~~~~sp~k~~raa~lk~rfadt--ilka~~k-----~l~-~~~k~d 623 (776)
..|-.|++.|+|||||+--+|. |+|-|+. .|. +|--||
T Consensus 65 k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGD 110 (190)
T PF09802_consen 65 KKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGD 110 (190)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccH
Confidence 4577899999999999876663 6666662 333 677776
No 189
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=36.87 E-value=3e+02 Score=26.83 Aligned_cols=9 Identities=11% Similarity=0.486 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 004051 608 ILKAREKAL 616 (776)
Q Consensus 608 ilka~~k~l 616 (776)
++..|+...
T Consensus 35 ~l~~R~~~I 43 (141)
T PRK08476 35 FMDNRNASI 43 (141)
T ss_pred HHHHHHHHH
Confidence 444555433
No 190
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.58 E-value=24 Score=41.82 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 004051 638 HREEKARLQAE 648 (776)
Q Consensus 638 q~eekarl~a~ 648 (776)
|++.++--||+
T Consensus 91 qk~~~~s~~~~ 101 (1103)
T KOG1420|consen 91 QKINNGSSQAD 101 (1103)
T ss_pred hhhhcccchhh
Confidence 44444444433
No 191
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=36.21 E-value=32 Score=44.68 Aligned_cols=19 Identities=74% Similarity=0.595 Sum_probs=8.8
Q ss_pred CCCCCCCCC-CCCCCCCCCC
Q 004051 498 SSSESGSSS-SDSGSSSGSE 516 (776)
Q Consensus 498 SSSdS~SSS-S~s~S~sss~ 516 (776)
|+|+|.|+| |||+|+||++
T Consensus 442 SsS~SESsS~SDSESESSSS 461 (1191)
T PF05110_consen 442 SSSESESSSSSDSESESSSS 461 (1191)
T ss_pred CCCCCCccCccccccccccc
Confidence 344444433 4555555544
No 192
>PTZ00491 major vault protein; Provisional
Probab=35.93 E-value=60 Score=40.55 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=17.3
Q ss_pred HHHHHHHhhhccCcccccccHHHHHhhhccccc
Q 004051 678 ARQALQMMEKTVDINENSRFMEDLEMLRIAQDE 710 (776)
Q Consensus 678 ar~~l~~m~~t~~~~~~~~~~~~le~l~~~~~~ 710 (776)
+..++++-..-++|+ +..|-.=++-||.-++.
T Consensus 772 ~~le~~k~~~la~ie-~~kf~~~v~aig~~T~~ 803 (850)
T PTZ00491 772 NELEIAKAKELADIE-ATKFERIVEALGRETLI 803 (850)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhChHHHH
Confidence 334444545556665 55666666666654433
No 193
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=35.83 E-value=3e+02 Score=27.89 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004051 638 HREEKARL 645 (776)
Q Consensus 638 q~eekarl 645 (776)
...|+++|
T Consensus 92 l~rere~~ 99 (157)
T PF15236_consen 92 LAREREEL 99 (157)
T ss_pred HHHHHHHH
Confidence 33333333
No 194
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=35.03 E-value=2.5e+02 Score=29.29 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=4.7
Q ss_pred ccHHHHHhh
Q 004051 696 RFMEDLEML 704 (776)
Q Consensus 696 ~~~~~le~l 704 (776)
.|++.|+.|
T Consensus 230 ~~~~~l~~~ 238 (242)
T cd03405 230 AFYRSLEAY 238 (242)
T ss_pred HHHHHHHHH
Confidence 445555554
No 195
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=34.94 E-value=2.1e+02 Score=30.39 Aligned_cols=8 Identities=25% Similarity=0.123 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 004051 698 MEDLEMLR 705 (776)
Q Consensus 698 ~~~le~l~ 705 (776)
..-|+.+.
T Consensus 229 ~~~le~~~ 236 (261)
T TIGR01933 229 RLYLETME 236 (261)
T ss_pred HHHHHHHH
Confidence 33344333
No 196
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=34.44 E-value=4.2e+02 Score=25.32 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 004051 608 ILKAREK 614 (776)
Q Consensus 608 ilka~~k 614 (776)
+|..|..
T Consensus 33 ~l~~R~~ 39 (140)
T PRK07353 33 VVEERED 39 (140)
T ss_pred HHHHHHH
Confidence 3344443
No 197
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=34.18 E-value=4.1e+02 Score=26.66 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=4.7
Q ss_pred cchhhHHHHHH
Q 004051 603 RFADTILKARE 613 (776)
Q Consensus 603 rfadtilka~~ 613 (776)
+..+.|-.|++
T Consensus 51 ~I~~~l~~Ae~ 61 (173)
T PRK13460 51 GVQNDINKASE 61 (173)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 198
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=34.00 E-value=1.1e+02 Score=36.34 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=3.5
Q ss_pred HHHHhhh
Q 004051 699 EDLEMLR 705 (776)
Q Consensus 699 ~~le~l~ 705 (776)
+|++.+.
T Consensus 335 kD~qk~~ 341 (489)
T PF05262_consen 335 KDQQKLI 341 (489)
T ss_pred HHHHHHH
Confidence 4555544
No 199
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=33.37 E-value=4.4 Score=36.90 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=42.3
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|++.|..|++.. ++-.|+.+..|.+-+.-..+=+.|.-| +-.||-+.-.+.
T Consensus 31 ~~p~Y~~~I~~P~dl~--tI~~kL~~~~Y~s~~ef~~D~~li~~N---a~~yn~~~s~i~ 85 (99)
T cd05506 31 GLPDYFDIIKKPMDLG--TVKKKLEKGEYSSPEEFAADVRLTFAN---AMRYNPPGNDVH 85 (99)
T ss_pred CCCCHHHHHcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3699999999999887 899999999999888776555555444 778886653333
No 200
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=33.28 E-value=3e+02 Score=28.96 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.5
Q ss_pred ccccHHHH
Q 004051 694 NSRFMEDL 701 (776)
Q Consensus 694 ~~~~~~~l 701 (776)
+..|++.|
T Consensus 107 d~~~l~~l 114 (207)
T PRK01005 107 DPEVSAKL 114 (207)
T ss_pred CHHHHHHH
Confidence 34445443
No 201
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=33.13 E-value=1.4e+02 Score=35.61 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhh
Q 004051 672 ELEREAARQALQMME 686 (776)
Q Consensus 672 e~er~~ar~~l~~m~ 686 (776)
|.||.+|+++-.+|.
T Consensus 261 eee~ke~e~~~~k~~ 275 (591)
T KOG2412|consen 261 EEERKEAEEQAEKEV 275 (591)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556666666666654
No 202
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=33.05 E-value=2.9e+02 Score=32.27 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=4.6
Q ss_pred hHHHHHHHHh
Q 004051 607 TILKAREKAL 616 (776)
Q Consensus 607 tilka~~k~l 616 (776)
.++..|++..
T Consensus 28 ~~l~~R~~~I 37 (445)
T PRK13428 28 RLMAARQDTV 37 (445)
T ss_pred HHHHHHHHHH
Confidence 3445555433
No 203
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=33.04 E-value=2.9e+02 Score=27.95 Aligned_cols=8 Identities=25% Similarity=0.327 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 004051 639 REEKARLQ 646 (776)
Q Consensus 639 ~eekarl~ 646 (776)
+.+.+.|.
T Consensus 26 ~~~~~~i~ 33 (188)
T PRK02292 26 DEEAEEII 33 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 204
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=32.82 E-value=2.7e+02 Score=31.92 Aligned_cols=38 Identities=34% Similarity=0.344 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 004051 605 ADTILKAREKALEKGEKRDPEKLRIEREELERR-----HREEKARLQAEAKAA 652 (776)
Q Consensus 605 adtilka~~k~l~~~~k~dp~kl~~e~e~le~~-----q~eekarl~a~~~aa 652 (776)
||.+-.|||. ..||+.+.++|+. .-.|||--+|++++|
T Consensus 292 ~~I~~VarEN----------s~LqrQKle~e~~l~a~qeakek~~KEAqarea 334 (442)
T PF06637_consen 292 AGIERVAREN----------SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREA 334 (442)
T ss_pred hhHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566662 3456666666665 223455555555554
No 205
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=32.59 E-value=4.1e+02 Score=28.75 Aligned_cols=47 Identities=32% Similarity=0.367 Sum_probs=31.8
Q ss_pred hccchhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 601 RNRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAA 652 (776)
Q Consensus 601 k~rfadtilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aa 652 (776)
...+...+++|++.+-.. -+++|.+.|++...-++|++++.+++++.
T Consensus 76 ~~~a~~~l~~~~~ea~~~-----l~~a~~q~e~~~~ea~~e~e~~~~~a~~e 122 (281)
T PRK06669 76 EEEAKEELLKKTDEASSI-----IEKLQMQIEREQEEWEEELERLIEEAKAE 122 (281)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888765433 24777777777777777777766666554
No 206
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.40 E-value=3.2e+02 Score=24.19 Aligned_cols=55 Identities=33% Similarity=0.403 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 627 LRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMME 686 (776)
Q Consensus 627 l~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~ 686 (776)
||.|.||| +|+++.|+.++.-|..+|---+.+ .+..|.+-.-=.|.-|.-|-+||
T Consensus 23 LQmEieEL----KEknn~l~~e~q~~q~~reaL~~e-neqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 23 LQMEIEEL----KEKNNSLSQEVQNAQHQREALERE-NEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHH----HHHhhHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhc
Confidence 57788887 466777877776555444311111 11222222222344566677776
No 207
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=31.93 E-value=3.7e+02 Score=27.33 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 004051 669 RKRELEREAARQALQM 684 (776)
Q Consensus 669 ~~re~er~~ar~~l~~ 684 (776)
.+.+.+|+.|+..|..
T Consensus 134 ~~I~~~k~~a~~~l~~ 149 (181)
T PRK13454 134 KRIAEIRAGALESVEE 149 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554444
No 208
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=31.85 E-value=3.4e+02 Score=28.26 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=5.0
Q ss_pred cchhhHHHHHH
Q 004051 603 RFADTILKARE 613 (776)
Q Consensus 603 rfadtilka~~ 613 (776)
..++.|-.|.+
T Consensus 83 ~I~~~L~~Ae~ 93 (205)
T PRK06231 83 LIEAEINQANE 93 (205)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 209
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=31.50 E-value=2.2e+02 Score=31.89 Aligned_cols=49 Identities=37% Similarity=0.383 Sum_probs=27.0
Q ss_pred ccchhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 602 NRFADTILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEE 654 (776)
Q Consensus 602 ~rfadtilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aae~ 654 (776)
.|-|+.+.+|.+-+-.+-+. .-+..+-|-|-...+|+|+-++++++.-+
T Consensus 170 kkkAe~a~kA~eeAkaKAe~----a~~k~kaEaEAkaa~ekAk~e~~aka~AE 218 (387)
T COG3064 170 KKKAEEAAKAAEEAKAKAEA----AAAKKKAEAEAKAAAEKAKAEAEAKAKAE 218 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45677777777644332211 22334445556666677776666665555
No 210
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.42 E-value=3.5e+02 Score=26.68 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 004051 608 ILKAREK 614 (776)
Q Consensus 608 ilka~~k 614 (776)
+|..|..
T Consensus 33 ~l~~R~~ 39 (159)
T PRK13461 33 VIDSRQS 39 (159)
T ss_pred HHHHHHH
Confidence 3444444
No 211
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=31.31 E-value=3.2e+02 Score=30.10 Aligned_cols=82 Identities=35% Similarity=0.343 Sum_probs=38.8
Q ss_pred CCCCh-hHH--HHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccC
Q 004051 620 EKRDP-EKL--RIEREELERR--HREEKARLQAEAKAAEEA--RRKAEAEAAAEA--KRKRELEREAARQALQMMEKTVD 690 (776)
Q Consensus 620 ~k~dp-~kl--~~e~e~le~~--q~eekarl~a~~~aae~a--~r~~~~~~~~e~--~~~re~er~~ar~~l~~m~~t~~ 690 (776)
-+.|| .|+ .+|++..+.+ .+|+-||+.|.+++--.| .+++|-+|++-+ ..-.-.-.|.+. .-++|+|-|-
T Consensus 226 ~~~DPRIK~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~k-ka~k~~Kk~i 304 (379)
T COG5269 226 KKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMK-KALKMEKKAI 304 (379)
T ss_pred HhcCcchhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHH-HHHHHHHHHH
Confidence 34555 365 3355555555 477888888776553333 333333332221 111122223333 3456666553
Q ss_pred cccccccHHHHHhhhc
Q 004051 691 INENSRFMEDLEMLRI 706 (776)
Q Consensus 691 ~~~~~~~~~~le~l~~ 706 (776)
-| -++|..-+|-
T Consensus 305 kn----a~kd~~yf~d 316 (379)
T COG5269 305 KN----AAKDADYFGD 316 (379)
T ss_pred Hh----hhhhhccccC
Confidence 33 1566665553
No 212
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=31.28 E-value=4.9e+02 Score=25.75 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 004051 608 ILKAREKAL 616 (776)
Q Consensus 608 ilka~~k~l 616 (776)
+|..|+...
T Consensus 36 ~l~~R~~~I 44 (164)
T PRK14473 36 LLNERTRRI 44 (164)
T ss_pred HHHHHHHHH
Confidence 344454433
No 213
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=31.06 E-value=1.2e+02 Score=31.14 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 004051 664 AAEAKRKRELEREAARQALQMMEKTVDIN 692 (776)
Q Consensus 664 ~~e~~~~re~er~~ar~~l~~m~~t~~~~ 692 (776)
+.-+.|+.+.++.+.+.+|.+|=.+-.|+
T Consensus 59 ~Ln~qr~~~~~~K~~~AqikQlI~~~~i~ 87 (177)
T PF09831_consen 59 ELNRQRQAEAERKEIQAQIKQLIEQNRIP 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44445555667777777777775544443
No 214
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=30.95 E-value=50 Score=26.09 Aligned_cols=16 Identities=63% Similarity=0.789 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhc
Q 004051 673 LEREAARQALQMMEKT 688 (776)
Q Consensus 673 ~er~~ar~~l~~m~~t 688 (776)
+-||+-|||+.++||.
T Consensus 24 lRre~erqA~~QLekA 39 (42)
T PF12052_consen 24 LRREAERQALAQLEKA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4466678888888874
No 215
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=30.83 E-value=3.4e+02 Score=30.61 Aligned_cols=10 Identities=10% Similarity=-0.067 Sum_probs=4.5
Q ss_pred chHHHHHHHh
Q 004051 591 PDKLYRAALL 600 (776)
Q Consensus 591 p~k~~raa~l 600 (776)
|...++.|+-
T Consensus 215 ~P~~v~~ai~ 224 (334)
T PRK11029 215 LPTEVSDAIY 224 (334)
T ss_pred CCHHHHHHHH
Confidence 3334555543
No 216
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=30.81 E-value=3.8e+02 Score=31.15 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=5.6
Q ss_pred HHHHHHhhh
Q 004051 679 RQALQMMEK 687 (776)
Q Consensus 679 r~~l~~m~~ 687 (776)
|.=|+-||+
T Consensus 325 RlYletme~ 333 (419)
T PRK10930 325 RLYIETMEK 333 (419)
T ss_pred HHHHHHHHH
Confidence 566666664
No 217
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=30.58 E-value=3.5e+02 Score=28.83 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.4
Q ss_pred chhhHHHHHH
Q 004051 604 FADTILKARE 613 (776)
Q Consensus 604 fadtilka~~ 613 (776)
.++.|-.|..
T Consensus 41 I~~~l~~Ae~ 50 (246)
T TIGR03321 41 IAGELADADT 50 (246)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 218
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=30.50 E-value=1.1e+02 Score=35.94 Aligned_cols=8 Identities=63% Similarity=1.120 Sum_probs=3.7
Q ss_pred cHHHHHhh
Q 004051 697 FMEDLEML 704 (776)
Q Consensus 697 ~~~~le~l 704 (776)
++.||..|
T Consensus 458 lmed~dv~ 465 (708)
T KOG3654|consen 458 LMEDLDVL 465 (708)
T ss_pred HHHhhccc
Confidence 34455533
No 219
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=30.43 E-value=98 Score=29.78 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=18.1
Q ss_pred cCCCCChhHHHHHHHHHHHHHHH
Q 004051 618 KGEKRDPEKLRIEREELERRHRE 640 (776)
Q Consensus 618 ~~~k~dp~kl~~e~e~le~~q~e 640 (776)
.++..|+++++..++++|.+..+
T Consensus 83 ~~~~id~~~a~~~~~~ae~~l~~ 105 (130)
T TIGR01216 83 FADDIDEAEAEKALEAAEKLLES 105 (130)
T ss_pred EcccCCHHHHHHHHHHHHHHHhh
Confidence 46678999999988888887653
No 220
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.16 E-value=3.5e+02 Score=29.05 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 004051 672 ELEREAARQALQMMEK 687 (776)
Q Consensus 672 e~er~~ar~~l~~m~~ 687 (776)
++..+.+..+++--+|
T Consensus 120 ~L~~~v~~la~~~A~k 135 (250)
T PRK14474 120 ALQQQTGQQMVKIIRA 135 (250)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555544444
No 221
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=29.57 E-value=8.2 Score=35.96 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=41.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccC---ccccccccCCcccccccccCCCCccCCccccee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDT---EMTASEDSCAPKRKCISLNIDGYDNFGVPLQVL 96 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~---~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~ 96 (776)
-.|+|+.+|..|++.. ++-.++++ +.|.+.+.-..+-+.|.-| |-.||-|.-.+
T Consensus 32 ~~p~Y~~iI~~PmdL~--tI~~kL~~~~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i 88 (109)
T cd05502 32 SVPNYYKIIKTPMDLS--LIRKKLQPKSPQHYSSPEEFVADVRLMFKN---CYKFNEEDSEV 88 (109)
T ss_pred CCCCHHHHCCCCccHH--HHHHHHhcCCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHH
Confidence 4799999999999987 88999998 5888877776666666544 78888765333
No 222
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=29.26 E-value=5.5 Score=36.96 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=44.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
..|+|+..|..|++.. ++-.|+.+..|.+...-..+-+.|.-| +-.||-|.-.+.
T Consensus 36 ~~pdYy~~I~~Pmdl~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yn~~~s~i~ 90 (104)
T cd05522 36 REPEYYQEISNPISLD--DIKKKVKRRKYKSFDQFLNDLNLMFEN---AKLYNENDSQEY 90 (104)
T ss_pred ccCcHHHHhCCCcCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4589999999999887 899999999999988887777777655 778887664444
No 223
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=28.85 E-value=3e+02 Score=32.29 Aligned_cols=62 Identities=34% Similarity=0.431 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc
Q 004051 627 LRIEREELERRHREEKARLQAEAKAAEEA--------RRKAEAEAA----AEAKRKRELEREAARQALQMMEKT 688 (776)
Q Consensus 627 l~~e~e~le~~q~eekarl~a~~~aae~a--------~r~~~~~~~----~e~~~~re~er~~ar~~l~~m~~t 688 (776)
||.|||+=-+..++|--.|++|.+--.+| -|.+|||.+ .++-..-|.|-+.|.+++.+++|-
T Consensus 397 lr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 397 LRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777888888999988743333 345555432 233333466666666666666663
No 224
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=28.84 E-value=2.5e+02 Score=33.69 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=3.3
Q ss_pred hhHHHHHH
Q 004051 606 DTILKARE 613 (776)
Q Consensus 606 dtilka~~ 613 (776)
-||..+..
T Consensus 175 e~~~~~~~ 182 (591)
T KOG2412|consen 175 ETRKEVKR 182 (591)
T ss_pred HHHHHHHH
Confidence 34444433
No 225
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.68 E-value=2.3e+02 Score=32.97 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.3
Q ss_pred hhhhcccccc
Q 004051 740 LEQLGLYMKM 749 (776)
Q Consensus 740 le~lgl~~k~ 749 (776)
+.=.|+++..
T Consensus 319 ~~wkG~vi~a 328 (420)
T COG4942 319 LRWKGMVIGA 328 (420)
T ss_pred ccccceEEec
Confidence 3344444443
No 226
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=28.43 E-value=6.1e+02 Score=25.32 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=6.3
Q ss_pred hhHHHHHHHHh
Q 004051 606 DTILKAREKAL 616 (776)
Q Consensus 606 dtilka~~k~l 616 (776)
--+|..|.+..
T Consensus 36 ~~~le~R~~~I 46 (167)
T PRK14475 36 AGALDAYAAKI 46 (167)
T ss_pred HHHHHHHHHHH
Confidence 45566666544
No 227
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=28.19 E-value=3.8e+02 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004051 630 EREELERRHREEKARLQAEAK 650 (776)
Q Consensus 630 e~e~le~~q~eekarl~a~~~ 650 (776)
.+++.+++..++.+.+..+++
T Consensus 33 i~~~a~~~a~~~~~~i~~~a~ 53 (198)
T PRK03963 33 IKEEARKRAESKAEWILRKAK 53 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 228
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.64 E-value=9.2 Score=36.09 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=51.6
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHHH
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eLe 118 (776)
.|+|+..|-.||+-+ ++-.++.++.|.+-+....+-+.|--| +..||-+.-.+. .-.++|.+=-.+||.
T Consensus 36 ~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~LI~~N---~~~yNg~~s~~~------~~A~~l~~d~~~el~ 104 (109)
T cd05492 36 LPKRRRLIHTHLDVA--DIQEKINSEKYTSLEEFKADALLLLHN---TAIFHGADSEQY------DAARWLYRDTCHDLR 104 (109)
T ss_pred CCCHHHHhCCCCcHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 799999999999988 899999999999999887777766555 677875543322 223444444455555
Q ss_pred HHH
Q 004051 119 QVR 121 (776)
Q Consensus 119 qvR 121 (776)
.+|
T Consensus 105 Ei~ 107 (109)
T cd05492 105 ELR 107 (109)
T ss_pred HHh
Confidence 443
No 229
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.60 E-value=1.2e+02 Score=34.49 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH
Q 004051 629 IEREELERRHREEKA----RLQAEAKAAE 653 (776)
Q Consensus 629 ~e~e~le~~q~eeka----rl~a~~~aae 653 (776)
.++|.|++.+..++- =|+-.++||+
T Consensus 81 kk~e~~~~~~~~~~r~kPkYi~nLie~ae 109 (379)
T KOG2117|consen 81 KKREQLPRLRLREKRRKPKYIENLIEAAE 109 (379)
T ss_pred HHhhhhHhhhhhccccccHHHHHHHHHHH
Confidence 345555555444444 2455555554
No 230
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=27.57 E-value=1.8e+02 Score=32.76 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=10.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 004051 623 DPEKLRIEREELERRHREEKAR 644 (776)
Q Consensus 623 dp~kl~~e~e~le~~q~eekar 644 (776)
|--++++|+++-+.+...+|+-
T Consensus 90 ~~~~~~rer~E~eL~eLkekq~ 111 (361)
T KOG3634|consen 90 DFDRIEREREEKELKELKEKQE 111 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555554444443
No 231
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=27.48 E-value=3.5e+02 Score=30.24 Aligned_cols=44 Identities=34% Similarity=0.398 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 004051 638 HREEKARLQAEAKAAEEARRKAEA---EAAAEAKRKRELEREAARQA 681 (776)
Q Consensus 638 q~eekarl~a~~~aae~a~r~~~~---~~~~e~~~~re~er~~ar~~ 681 (776)
.+.|+.|.......+++.|-+.+. .+....-++||.|||.||..
T Consensus 145 ~KaE~~R~K~L~dQ~eArR~k~~~~r~~~~~~~~~~~~~~~~~~~~~ 191 (357)
T PTZ00436 145 VKNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDRERARRE 191 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 344445554444444444433331 22223335788888888864
No 232
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=27.35 E-value=4.4e+02 Score=26.28 Aligned_cols=16 Identities=44% Similarity=0.405 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 004051 628 RIEREELERRHREEKA 643 (776)
Q Consensus 628 ~~e~e~le~~q~eeka 643 (776)
|+|.++|+....+.+.
T Consensus 46 RrE~~Rl~~me~~~~~ 61 (142)
T PF06658_consen 46 RREYERLEYMEEEAKK 61 (142)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666665444433
No 233
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.61 E-value=1.3e+03 Score=28.63 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 635 ERRHREEKARLQAEAKAAEEARRK 658 (776)
Q Consensus 635 e~~q~eekarl~a~~~aae~a~r~ 658 (776)
||..+...|-++-++|+|+++.++
T Consensus 537 ekl~~khqa~~ekeak~~~a~EkK 560 (948)
T KOG0577|consen 537 EKLARKHQAIGEKEAKAASAEEKK 560 (948)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 333444445555566666655544
No 234
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.37 E-value=4.2e+02 Score=32.04 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=46.9
Q ss_pred HHhhccchhh-------HHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 598 ALLRNRFADT-------ILKAREKALEKGEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRK 670 (776)
Q Consensus 598 a~lk~rfadt-------ilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~ 670 (776)
+.++.|..+. -+|.|-++|.+++--+|..+++-++++++.+++=+|-. ++-+ -++..
T Consensus 178 ~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~--------~~i~--------~~~~~ 241 (555)
T TIGR03545 178 QKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADK--------QKIK--------SAKND 241 (555)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH--------HHHH--------HHHHH
Confidence 3445555544 46777778888888899999888888887665543322 2222 12233
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 004051 671 RELEREAARQALQMMEKTVD 690 (776)
Q Consensus 671 re~er~~ar~~l~~m~~t~~ 690 (776)
-+.+++..++.+.++++...
T Consensus 242 l~~~~~~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 242 LQNDKKQLKADLAELKKAPQ 261 (555)
T ss_pred HHHhHHHHHHHHHHHHhccH
Confidence 44455556666666666543
No 235
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=26.06 E-value=4.1e+02 Score=26.71 Aligned_cols=52 Identities=31% Similarity=0.388 Sum_probs=30.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 634 LERRHREEKA----RLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQMME 686 (776)
Q Consensus 634 le~~q~eeka----rl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~ 686 (776)
+-.||++..+ +||-+++.-+.|.. |-|-.-.+.+.+||.||+.|.-+|+.+-
T Consensus 75 ~A~RQ~q~q~~rV~~Lqd~~~~hksa~~-aLas~L~~Lr~q~e~e~keaa~qL~~~~ 130 (152)
T PF15186_consen 75 FAARQRQLQARRVQWLQDQAEEHKSAAW-ALASELKRLREQREMERKEAAFQLQLTQ 130 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 67777776666553 2222244566677888888777766544
No 236
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.96 E-value=3.3e+02 Score=31.63 Aligned_cols=11 Identities=9% Similarity=0.332 Sum_probs=5.5
Q ss_pred CCCCeEEEEcc
Q 004051 394 TGEDELEIDID 404 (776)
Q Consensus 394 ~~~dEIEIDId 404 (776)
..+|.|.|++.
T Consensus 207 P~~D~vt~ev~ 217 (440)
T KOG2357|consen 207 PVGDQVTFEVT 217 (440)
T ss_pred cccceEEEEEe
Confidence 34455555543
No 237
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=25.63 E-value=5.4e+02 Score=26.06 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=5.1
Q ss_pred cchhhHHHHHH
Q 004051 603 RFADTILKARE 613 (776)
Q Consensus 603 rfadtilka~~ 613 (776)
+.++.|..|..
T Consensus 59 ~I~~~l~~Ae~ 69 (184)
T CHL00019 59 TILNTIRNSEE 69 (184)
T ss_pred HHHHHHHHHHH
Confidence 34444544444
No 238
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=25.23 E-value=4.5e+02 Score=28.19 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004051 638 HREEKARLQAEAKAAEEARRKAE 660 (776)
Q Consensus 638 q~eekarl~a~~~aae~a~r~~~ 660 (776)
.++|+.+|++.+..|+++-++-+
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444433
No 239
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=25.11 E-value=5.6e+02 Score=25.70 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=6.4
Q ss_pred ccchhhHHHHHH
Q 004051 602 NRFADTILKARE 613 (776)
Q Consensus 602 ~rfadtilka~~ 613 (776)
.+.++.|..|..
T Consensus 53 ~~I~~~l~~A~~ 64 (174)
T PRK07352 53 EAILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 240
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=25.11 E-value=10 Score=33.04 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=40.4
Q ss_pred CCCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcc
Q 004051 37 GFVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (776)
Q Consensus 37 ~~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~ 92 (776)
...|+|+..|..|++.. ++-.|+.++.|.+...-..+-+.|.-| +..||-+
T Consensus 30 ~~~~~Y~~~i~~P~~l~--~I~~kl~~~~Y~s~~~f~~D~~li~~N---a~~~n~~ 80 (99)
T cd04369 30 KEAPDYYEVIKNPMDLS--TIKKKLKNGEYKSLEEFEADVRLIFSN---AKTYNGP 80 (99)
T ss_pred hcCCCHHHHHhCcccHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 46899999999999887 899999999998888776666666555 6667744
No 241
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.09 E-value=3.1e+02 Score=30.24 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.9
Q ss_pred CCCCchHHH
Q 004051 587 RQVSPDKLY 595 (776)
Q Consensus 587 ~~~sp~k~~ 595 (776)
+.|++++..
T Consensus 82 k~ls~eE~~ 90 (290)
T KOG2689|consen 82 KLLSEEEKK 90 (290)
T ss_pred cccChHHHH
Confidence 456665543
No 242
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.08 E-value=6e+02 Score=25.14 Aligned_cols=9 Identities=11% Similarity=0.346 Sum_probs=3.6
Q ss_pred hhhHHHHHH
Q 004051 605 ADTILKARE 613 (776)
Q Consensus 605 adtilka~~ 613 (776)
++.|-.|..
T Consensus 45 ~~~l~~Ae~ 53 (164)
T PRK14473 45 EESLRDAEK 53 (164)
T ss_pred HHHHHHHHH
Confidence 344444433
No 243
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=25.02 E-value=3.5e+02 Score=28.81 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcccccc
Q 004051 664 AAEAKRKRELEREAARQALQMMEKTVDINENSR 696 (776)
Q Consensus 664 ~~e~~~~re~er~~ar~~l~~m~~t~~~~~~~~ 696 (776)
..++....++=|.++.+||.++...+.-++|-.
T Consensus 169 ~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~~e~~~ 201 (221)
T PF10376_consen 169 LEQLQSLIKKWRSASQEALYELQSEMSEEEGEK 201 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 446777778888899999999988777644444
No 244
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.92 E-value=3e+02 Score=36.25 Aligned_cols=63 Identities=32% Similarity=0.402 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004051 627 LRIEREELERRHREEKARLQAEAKAAEEA--------RRKAEAEA----AAEAKRKRELEREAARQALQMMEKTV 689 (776)
Q Consensus 627 l~~e~e~le~~q~eekarl~a~~~aae~a--------~r~~~~~~----~~e~~~~re~er~~ar~~l~~m~~t~ 689 (776)
|+.|||+=-+-.++|--.||+|.+--.+| =|.+|||. +.++-+.-|.|-+.|-+++.+++|--
T Consensus 1167 l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1167 LKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777776677888889999998743333 24455543 23333444666666777777777643
No 245
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=24.49 E-value=2.5e+02 Score=33.51 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhh
Q 004051 675 REAARQALQMME 686 (776)
Q Consensus 675 r~~ar~~l~~m~ 686 (776)
.++..+.|.+|-
T Consensus 339 ~~~~~~~l~~~l 350 (582)
T PF09731_consen 339 EEAHEEHLKNEL 350 (582)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 246
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=24.40 E-value=95 Score=26.87 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 250 GTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 250 ~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
..|+..+.+|.|.|..++++|.-.+|.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999877663
No 247
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=24.34 E-value=4e+02 Score=29.50 Aligned_cols=11 Identities=45% Similarity=0.401 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 004051 641 EKARLQAEAKA 651 (776)
Q Consensus 641 ekarl~a~~~a 651 (776)
++.|.+|++.|
T Consensus 226 ~~~r~ege~~a 236 (317)
T TIGR01932 226 RMHRSQGEEKA 236 (317)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 248
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=24.26 E-value=6.5e+02 Score=24.43 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 004051 606 DTILKAR 612 (776)
Q Consensus 606 dtilka~ 612 (776)
+.|-.|.
T Consensus 42 ~~l~~a~ 48 (156)
T PRK05759 42 DGLAAAE 48 (156)
T ss_pred HHHHHHH
Confidence 3333333
No 249
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.68 E-value=9.1e+02 Score=26.82 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=3.4
Q ss_pred Ccchhhh
Q 004051 477 PPVAIEK 483 (776)
Q Consensus 477 pPv~iek 483 (776)
+||.+..
T Consensus 5 sP~~~~~ 11 (305)
T PF15290_consen 5 SPVNIRD 11 (305)
T ss_pred CCCCCcc
Confidence 4555544
No 250
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=23.47 E-value=8.7e+02 Score=25.71 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=3.8
Q ss_pred hHHHHHHH
Q 004051 592 DKLYRAAL 599 (776)
Q Consensus 592 ~k~~raa~ 599 (776)
...++.||
T Consensus 175 p~~i~~a~ 182 (266)
T cd03404 175 PEEVQDAF 182 (266)
T ss_pred CHHHHHHH
Confidence 33455554
No 251
>PRK12472 hypothetical protein; Provisional
Probab=23.32 E-value=4e+02 Score=31.67 Aligned_cols=84 Identities=26% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 605 ADTILKAREKALEKGEKRDPEKLRIEREELERR-----------------HREEKARLQAEAKAAEEARRKAEAEAAAEA 667 (776)
Q Consensus 605 adtilka~~k~l~~~~k~dp~kl~~e~e~le~~-----------------q~eekarl~a~~~aae~a~r~~~~~~~~e~ 667 (776)
|.++..++. .-.+.-+.+.-||++.+.+-+.. .+.+.++-.|+.++++++.+...|++.++.
T Consensus 209 ~~~~~~~~~-~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~~a~~~~~~ 287 (508)
T PRK12472 209 AKTAAAAAA-REAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEA 287 (508)
T ss_pred HHHHHHHHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 004051 668 KRKRELEREAARQALQMMEKTV 689 (776)
Q Consensus 668 ~~~re~er~~ar~~l~~m~~t~ 689 (776)
|+.--..-..|=.+.+.-..++
T Consensus 288 ~~~~~~~~~~a~~~a~~~~~~~ 309 (508)
T PRK12472 288 KRAAAAATKEAAKAAAAKKAET 309 (508)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
No 252
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=23.28 E-value=5.1e+02 Score=25.50 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=3.7
Q ss_pred chhhHHHHH
Q 004051 604 FADTILKAR 612 (776)
Q Consensus 604 fadtilka~ 612 (776)
.++.|-.|.
T Consensus 41 I~~~l~~A~ 49 (159)
T PRK13461 41 IDNKIEKAD 49 (159)
T ss_pred HHHHHHHHH
Confidence 334444443
No 253
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.18 E-value=6.9e+02 Score=24.54 Aligned_cols=12 Identities=17% Similarity=0.136 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 004051 672 ELEREAARQALQ 683 (776)
Q Consensus 672 e~er~~ar~~l~ 683 (776)
+.||+.|+.+|.
T Consensus 108 ~~ek~~a~~el~ 119 (159)
T PRK09173 108 AQAETDAINAVR 119 (159)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 254
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.03 E-value=1.5e+02 Score=33.94 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 644 RLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQM 684 (776)
Q Consensus 644 rl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~ 684 (776)
.|+++++++...=.. +.+.|++-|-|||+||.+|++
T Consensus 78 di~~qlr~~rtel~~-----a~~~k~~~e~er~~~~~El~~ 113 (499)
T COG4372 78 DIRPQLRALRTELGT-----AQGEKRAAETEREAARSELQK 113 (499)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
No 255
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=23.03 E-value=1.3e+02 Score=33.67 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHH
Q 004051 606 DTILKAREKALEKGEKRDPEKLRIEREELERRHREEKA 643 (776)
Q Consensus 606 dtilka~~k~l~~~~k~dp~kl~~e~e~le~~q~eeka 643 (776)
|..++-=..+|.+ +|-++-+.||.+||.+||++++
T Consensus 284 DSr~R~d~~al~~---gd~~~A~~eK~~lEe~QR~~rk 318 (354)
T PF01237_consen 284 DSRWRPDQRALEN---GDIDKAQEEKKRLEEKQRADRK 318 (354)
T ss_dssp BHHHHHHHHHHHH---T-HHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3433333345544 4778888899999988886644
No 256
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=23.01 E-value=2.6e+02 Score=33.34 Aligned_cols=120 Identities=24% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCCCCCCeEEEEccCCCHHHHHHHHHHHHHH------HHHHhhh------------------------------------
Q 004051 391 AGETGEDELEIDIDALSDDTLFALRKLLDDY------LLEKQQK------------------------------------ 428 (776)
Q Consensus 391 ~~~~~~dEIEIDId~L~~~TL~eL~~~V~~~------L~ek~K~------------------------------------ 428 (776)
.....+.+++||++.|+++++..|.+--+.| +...-|+
T Consensus 192 dedd~D~Dve~D~~~ld~eq~~tlnkqg~~ygmk~g~fv~mlkkdkeea~a~k~lk~~d~eka~lSgResRrerr~~Rer 271 (653)
T KOG2548|consen 192 DEDDEDEDVEFDSNDLDDEQMETLNKQGEFYGMKYGDFVYMLKKDKEEAKAQKELKKGDPEKAKLSGRESRRERRIERER 271 (653)
T ss_pred cccccccccccccccCCHHHHHHHHhhhhhhccccchHHHHhhhhHHHHHHHHHHHhcCHHHHhhccchhHHHHHHHHHH
Q ss_pred -------------------------cCCCCCCccccccccCCCCCccccccCCCCccccccccCCCC-------------
Q 004051 429 -------------------------QANPGPCEMEVLNESGLSNSSMQLCKGNDLVDEDVDIVGGND------------- 470 (776)
Q Consensus 429 -------------------------~~k~e~~e~e~~~~sg~s~Ss~~~~K~~e~~eE~vdi~gg~~------------- 470 (776)
+...++.+ ...+.+|.++ .....+.++--.-..||++
T Consensus 272 r~a~r~~sg~s~a~~~d~~t~~g~k~~~se~se-~srs~sgs~~----d~~r~eKieyITsFGGgde~~a~aaaaasgvs 346 (653)
T KOG2548|consen 272 RRATRRSSGPSYAHHDDYRTRSGSKQKSSEPSE-SSRSRSGSPS----DEIRKEKIEYITSFGGGDERDAMAAAAASGVS 346 (653)
T ss_pred HHhccCCCCccccccCCcccccccccCCCCcch-hhhccCCCCc----cccccccceEEeecCCCcchhhhhhHHhccCC
Q ss_pred ---CCCCCCCcchhhhhhhc-cCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q 004051 471 ---PPVTDIPPVAIEKDAAN-RNSKCSSSSSSSSESGSSS-SDSGSSSGS 515 (776)
Q Consensus 471 ---~p~~~~pPv~iekd~~~-~~s~~SSssSSSSdS~SSS-S~s~S~sss 515 (776)
+|..+++-......... ....+.+.|.+++.+..++ +-|+|-|++
T Consensus 347 ~p~~p~~~~dkl~~~s~nr~~~r~rvds~s~sss~s~tvs~srssSrsss 396 (653)
T KOG2548|consen 347 PPRSPPSQSDKLSRPSPNRILERRRVDSASDSSSESDTVSKSRSSSRSSS 396 (653)
T ss_pred CCCCCCcccccccCCCccchhhhhccCccccccccccccccccccccccc
No 257
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=22.90 E-value=6.7e+02 Score=25.20 Aligned_cols=9 Identities=22% Similarity=0.165 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 004051 605 ADTILKARE 613 (776)
Q Consensus 605 adtilka~~ 613 (776)
.+.|-.|..
T Consensus 55 ~~~l~~Ae~ 63 (173)
T PRK13453 55 NRDIDDAEQ 63 (173)
T ss_pred HHHHHHHHH
Confidence 333434433
No 258
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=22.87 E-value=1.5e+02 Score=29.68 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 625 EKLRIEREELERRHREEKARLQAEAKAA 652 (776)
Q Consensus 625 ~kl~~e~e~le~~q~eekarl~a~~~aa 652 (776)
.||+.|.+.|.. .++..+-+++++|
T Consensus 13 ~~L~~EL~~L~~---~~r~e~~~~i~~A 37 (157)
T PRK01885 13 ARLKQELDYLWR---EERPEVTQKVSWA 37 (157)
T ss_pred HHHHHHHHHHHh---hhhHHHHHHHHHH
Confidence 345555555544 4444444444444
No 259
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.84 E-value=2.3e+02 Score=31.05 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 624 PEKLRIEREELERRHREEKARLQAEAKAAEEARRK 658 (776)
Q Consensus 624 p~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~ 658 (776)
-+.++.+.+.|+..+++..+.|+++.+.-++..+.
T Consensus 213 ~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~ 247 (297)
T PF02841_consen 213 AEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQ 247 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777776665553
No 260
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=22.75 E-value=4.5e+02 Score=26.23 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 004051 672 ELEREAARQAL 682 (776)
Q Consensus 672 e~er~~ar~~l 682 (776)
+.||+.|+.+|
T Consensus 116 ~~e~~~a~~el 126 (167)
T PRK14475 116 AQAEAQAAADV 126 (167)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 261
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.70 E-value=4.8e+02 Score=30.49 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 004051 672 ELEREAARQALQMMEKTV 689 (776)
Q Consensus 672 e~er~~ar~~l~~m~~t~ 689 (776)
++..+.+..+++.-+|.+
T Consensus 116 elr~ei~~lAv~~A~kil 133 (445)
T PRK13428 116 QLRLELGHESVRQAGELV 133 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444554445433
No 262
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=22.59 E-value=4.7e+02 Score=26.31 Aligned_cols=24 Identities=46% Similarity=0.691 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH
Q 004051 635 ERRHREEKARLQAE-AKAAEEARRK 658 (776)
Q Consensus 635 e~~q~eekarl~a~-~~aae~a~r~ 658 (776)
+++.++|=.+|.++ -+-+++|+++
T Consensus 74 er~~~eELe~ileen~rkvEEAQrk 98 (149)
T PF15346_consen 74 ERKKREELEKILEENRRKVEEAQRK 98 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333 3344444443
No 263
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.10 E-value=2.7e+02 Score=32.43 Aligned_cols=41 Identities=34% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccc
Q 004051 654 EARRKAEAEAAAEAKRKRELEREAARQALQMMEKTVDINENS 695 (776)
Q Consensus 654 ~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m~~t~~~~~~~ 695 (776)
+|-|..|.....|-.+-| +|-|.-|.||.+-||-.+-+...
T Consensus 291 ea~rl~elreg~e~e~~r-kelE~lR~~L~kAEkele~nS~w 331 (575)
T KOG4403|consen 291 EAPRLSELREGVENETSR-KELEQLRVALEKAEKELEANSSW 331 (575)
T ss_pred hhhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHhccCC
Confidence 445555544455555555 46688999999999977776433
No 264
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.87 E-value=5e+02 Score=30.22 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHh---hhccCcccccccHHHH
Q 004051 669 RKRELEREAARQALQMM---EKTVDINENSRFMEDL 701 (776)
Q Consensus 669 ~~re~er~~ar~~l~~m---~~t~~~~~~~~~~~~l 701 (776)
..+..|-+.+|-.+..| |++|+|.+.-..+.|+
T Consensus 84 ~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~ 119 (459)
T KOG0288|consen 84 DVLIAENLRIRSLNEIRELREQKAEFENAELALREM 119 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Confidence 33344444455444444 3566666555545443
No 265
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=21.82 E-value=1.1e+03 Score=26.05 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=18.2
Q ss_pred CCchHHHHHHHh-----hccchh---hHHHHHHHHh
Q 004051 589 VSPDKLYRAALL-----RNRFAD---TILKAREKAL 616 (776)
Q Consensus 589 ~sp~k~~raa~l-----k~rfad---tilka~~k~l 616 (776)
..|+-+=|||=. +++.|- -+.|-|+.|.
T Consensus 29 FDP~aLERaAkAlrel~~S~~Ak~afel~k~QE~Tk 64 (276)
T PF12037_consen 29 FDPEALERAAKALRELNSSPHAKKAFELMKKQEETK 64 (276)
T ss_pred CCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 458888888854 678765 3455666554
No 266
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=21.62 E-value=5.5e+02 Score=27.31 Aligned_cols=55 Identities=31% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 632 EELERRHREEKARLQAEAKAAEEARRKAEAE--AAAEAKRKRELEREAARQALQMME 686 (776)
Q Consensus 632 e~le~~q~eekarl~a~~~aae~a~r~~~~~--~~~e~~~~re~er~~ar~~l~~m~ 686 (776)
|||.....--...|++-.-+|.+.-||.+.+ .-..+=++--+||-.||..||+.=
T Consensus 4 EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 4 EELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454444444555555444444444443322 223334455678888999999653
No 267
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=6.3e+02 Score=27.98 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=42.9
Q ss_pred hHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 607 TILKAREKALEKGEKRDPEKLRIEREELERRHRE---EKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQ 683 (776)
Q Consensus 607 tilka~~k~l~~~~k~dp~kl~~e~e~le~~q~e---ekarl~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l~ 683 (776)
..+|-|+|....--|+.|+-=-+++..+-...++ -||.++|++.|--.|-++ .|.+-++...+.+..+-|-++-
T Consensus 233 K~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kk---kaKE~~kka~k~~Kk~ikna~k 309 (379)
T COG5269 233 KSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKK---KAKEVMKKALKMEKKAIKNAAK 309 (379)
T ss_pred hhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHH---hHHHHHHHHHHHHHHHHHhhhh
Confidence 4457777766655566655443333333333333 356677777766555544 2344455555666677788876
Q ss_pred Hhh
Q 004051 684 MME 686 (776)
Q Consensus 684 ~m~ 686 (776)
...
T Consensus 310 d~~ 312 (379)
T COG5269 310 DAD 312 (379)
T ss_pred hhc
Confidence 643
No 268
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.24 E-value=1.6e+02 Score=30.81 Aligned_cols=15 Identities=67% Similarity=0.727 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHH
Q 004051 624 PEKLRIEREELERRH 638 (776)
Q Consensus 624 p~kl~~e~e~le~~q 638 (776)
-+|.|+|||+||.|.
T Consensus 128 ~~~~~~~~~~~~~~~ 142 (197)
T PRK12585 128 IEKARQEREELEERM 142 (197)
T ss_pred HHHHHHhHHHHHHHH
Confidence 467788888888774
No 269
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=21.16 E-value=6.6e+02 Score=26.15 Aligned_cols=58 Identities=33% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004051 628 RIEREELERRHREEKARLQAEAKA-AEEARRKAEAEAAAEAKRKRELEREAARQALQMM 685 (776)
Q Consensus 628 ~~e~e~le~~q~eekarl~a~~~a-ae~a~r~~~~~~~~e~~~~re~er~~ar~~l~~m 685 (776)
+.|.++.....++|-+++.+++++ |+.+.+...+.++.|+-+.++...-.|......+
T Consensus 16 ~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 270
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=21.10 E-value=86 Score=30.55 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 004051 622 RDPEKLRIEREELERRHRE 640 (776)
Q Consensus 622 ~dp~kl~~e~e~le~~q~e 640 (776)
+|.++.+..+|+.|.+..+
T Consensus 89 ID~~~a~~a~erAe~~L~~ 107 (133)
T PRK00539 89 LDYDETLKRKKELERKIKH 107 (133)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8888888888888777654
No 271
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.79 E-value=5e+02 Score=29.10 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=3.2
Q ss_pred CChhHHH
Q 004051 622 RDPEKLR 628 (776)
Q Consensus 622 ~dp~kl~ 628 (776)
.|-++..
T Consensus 113 ~d~~~te 119 (309)
T TIGR00570 113 IDLENTK 119 (309)
T ss_pred CcHHHHH
Confidence 4544443
No 272
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.31 E-value=7.7e+02 Score=25.76 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=4.7
Q ss_pred cchhhHHHHHH
Q 004051 603 RFADTILKARE 613 (776)
Q Consensus 603 rfadtilka~~ 613 (776)
+.++.|-.|..
T Consensus 88 ~I~~~L~~Ae~ 98 (204)
T PRK09174 88 RIAQDLDQAAR 98 (204)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 273
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.30 E-value=2.8e+02 Score=27.25 Aligned_cols=57 Identities=30% Similarity=0.329 Sum_probs=32.5
Q ss_pred hhhHHHHHHH-Hh-hc--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 605 ADTILKAREK-AL-EK--GEKRDPEKLRIEREELERRHREEKARLQAEAKAAEEARRKAEAEAAAEAKRKRE 672 (776)
Q Consensus 605 adtilka~~k-~l-~~--~~k~dp~kl~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~~~~~e~~~~re 672 (776)
.|.|+|+|+- .| ++ |.... |..|.+.=++|++|.+.|++.++.+-.++++..++=++
T Consensus 76 ~dIi~kakqIe~LIdsLPg~~~s-----------ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 76 TDIIRKAKQIEYLIDSLPGIEVS-----------EEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSS------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888886 33 22 32233 33445555678888888877776655444444444333
No 274
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=20.27 E-value=3.8e+02 Score=28.44 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=3.4
Q ss_pred hhHHHHH
Q 004051 624 PEKLRIE 630 (776)
Q Consensus 624 p~kl~~e 630 (776)
|..++.-
T Consensus 175 p~~i~~a 181 (266)
T cd03404 175 PEEVQDA 181 (266)
T ss_pred CHHHHHH
Confidence 5555543
Done!