Query 004051
Match_columns 776
No_of_seqs 407 out of 1507
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 99.9 8.2E-27 2.8E-31 216.9 13.6 103 203-307 12-114 (117)
2 2oss_A HUNK1 protein, bromodom 99.9 5.4E-27 1.8E-31 221.4 12.4 105 202-306 19-123 (127)
3 2ouo_A HUNK1 protein, bromodom 99.9 3.9E-27 1.3E-31 223.3 11.0 105 202-306 20-127 (130)
4 3fkm_X Signaling protein; brom 99.9 1E-26 3.5E-31 229.0 12.4 109 198-306 15-123 (166)
5 3d7c_A General control of amin 99.9 1.3E-26 4.4E-31 214.1 12.2 103 202-306 5-107 (112)
6 4alg_A Bromodomain-containing 99.9 1.3E-26 4.3E-31 225.8 11.8 107 201-307 29-135 (154)
7 3p1f_A CREB-binding protein; s 99.9 2.5E-26 8.5E-31 214.2 12.6 109 201-309 8-117 (119)
8 3jvl_A Bromodomain-containing 99.9 8.7E-27 3E-31 217.6 9.1 106 201-306 6-114 (120)
9 2d9e_A Peregrin; four-helix bu 99.9 3.6E-26 1.2E-30 214.1 12.6 106 203-310 6-111 (121)
10 3q2e_A Bromodomain and WD repe 99.9 3E-26 1E-30 215.1 11.8 109 201-311 7-116 (123)
11 2dat_A Possible global transcr 99.9 3.7E-26 1.3E-30 214.4 12.4 104 201-306 10-119 (123)
12 3mb3_A PH-interacting protein; 99.9 2.9E-26 9.9E-31 218.3 11.5 108 201-310 18-126 (135)
13 2grc_A Probable global transcr 99.9 6.6E-26 2.2E-30 214.5 12.7 107 201-309 8-121 (129)
14 1e6i_A Transcriptional activat 99.9 4.1E-26 1.4E-30 213.7 11.1 101 205-307 14-114 (121)
15 2i7k_A Bromodomain-containing 99.9 8.8E-26 3E-30 210.4 12.6 104 201-306 5-108 (117)
16 3nxb_A CAT eye syndrome critic 99.9 4.9E-26 1.7E-30 211.3 10.7 101 203-305 15-115 (116)
17 2yyn_A Transcription intermedi 99.9 9.4E-26 3.2E-30 215.1 12.9 104 201-307 17-122 (135)
18 3mb4_A Protein polybromo-1; PB 99.9 8.7E-26 3E-30 212.1 10.2 103 203-307 14-122 (124)
19 3rcw_A Bromodomain-containing 99.9 2.7E-25 9.4E-30 211.6 13.2 107 202-310 11-117 (135)
20 3ljw_A Protein polybromo-1; al 99.9 2.1E-25 7.1E-30 208.4 11.9 109 201-311 5-119 (120)
21 3uv5_A Transcription initiatio 99.9 7E-26 2.4E-30 238.3 8.7 198 38-310 43-241 (265)
22 3iu5_A Protein polybromo-1; PB 99.9 2.7E-25 9.2E-30 206.4 11.2 104 203-308 4-113 (116)
23 3hme_A Bromodomain-containing 99.9 4.3E-25 1.5E-29 207.3 12.4 102 203-306 12-113 (123)
24 3mqm_A Probable histone-lysine 99.9 3.9E-25 1.3E-29 208.2 11.7 107 202-310 7-119 (126)
25 3k2j_A Protein polybromo-1; PB 99.9 9.1E-25 3.1E-29 207.1 12.5 107 201-309 14-126 (130)
26 3uv4_A Second bromodomain of h 99.9 2.7E-24 9.1E-29 210.2 11.1 107 202-310 27-134 (158)
27 2ri7_A Nucleosome-remodeling f 99.9 2.9E-24 1E-28 212.1 9.9 104 201-306 69-172 (174)
28 3aad_A Transcription initiatio 99.9 8.8E-25 3E-29 232.9 6.6 198 38-310 76-274 (292)
29 3o36_A Transcription intermedi 99.9 1.7E-23 5.8E-28 208.8 13.5 104 200-306 77-182 (184)
30 3tlp_A Protein polybromo-1; PB 99.9 1.5E-23 5E-28 203.0 11.3 101 205-307 25-132 (150)
31 3dai_A ATPase family AAA domai 99.9 2.9E-23 1E-27 196.5 12.7 101 202-304 8-112 (130)
32 2r10_A Chromatin structure-rem 99.9 1.1E-23 3.6E-28 230.7 9.8 86 218-305 227-312 (361)
33 2r0y_A Chromatin structure-rem 99.9 1E-23 3.5E-28 226.5 7.2 86 218-305 177-262 (311)
34 2ro1_A Transcription intermedi 99.9 7.3E-23 2.5E-27 205.5 9.9 100 201-307 73-177 (189)
35 3uv5_A Transcription initiatio 99.9 1.2E-22 4.2E-27 213.6 11.9 106 203-310 13-118 (265)
36 3u5n_A E3 ubiquitin-protein li 99.9 2.3E-22 7.9E-27 204.2 12.3 104 200-306 77-200 (207)
37 2dkw_A Hypothetical protein KI 99.9 2.7E-22 9.1E-27 190.4 11.7 98 200-304 8-109 (131)
38 3aad_A Transcription initiatio 99.9 2.8E-22 9.5E-27 213.7 9.6 105 202-308 45-149 (292)
39 2r10_A Chromatin structure-rem 99.8 3.9E-19 1.3E-23 194.6 11.4 100 204-307 78-180 (361)
40 2r0y_A Chromatin structure-rem 99.7 9.3E-19 3.2E-23 188.0 7.9 101 203-307 27-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 4E-17 1.4E-21 156.8 13.1 101 203-309 6-112 (147)
42 2jns_A Bromodomain-containing 99.5 3E-15 1E-19 133.3 2.0 75 351-425 10-86 (90)
43 3lqh_A Histone-lysine N-methyl 99.4 2.4E-13 8.3E-18 135.6 8.9 98 202-312 73-170 (183)
44 2lm0_A AF4/FMR2 family member 93.3 0.11 3.6E-06 48.3 5.6 60 360-419 60-120 (125)
45 2d9e_A Peregrin; four-helix bu 91.7 0.015 5.2E-07 53.8 -2.2 81 38-129 36-116 (121)
46 3rcw_A Bromodomain-containing 86.8 0.062 2.1E-06 50.5 -2.1 85 39-134 43-127 (135)
47 2dat_A Possible global transcr 86.7 0.041 1.4E-06 51.0 -3.4 54 39-97 49-102 (123)
48 3hme_A Bromodomain-containing 83.1 0.06 2E-06 49.9 -4.0 75 38-123 42-116 (123)
49 4alg_A Bromodomain-containing 82.1 0.079 2.7E-06 51.1 -3.7 73 39-132 64-136 (154)
50 2oss_A HUNK1 protein, bromodom 81.7 0.081 2.8E-06 49.3 -3.7 55 38-97 52-106 (127)
51 2ouo_A HUNK1 protein, bromodom 81.0 0.087 3E-06 49.3 -3.8 54 39-97 57-110 (130)
52 3uv4_A Second bromodomain of h 80.7 0.11 3.8E-06 50.3 -3.3 78 38-126 59-136 (158)
53 1e6i_A Transcriptional activat 78.4 0.12 4E-06 47.8 -3.8 55 38-97 42-96 (121)
54 3d7c_A General control of amin 77.9 0.12 4.2E-06 46.9 -3.8 54 38-96 36-89 (112)
55 2zuo_A MVP, major vault protei 77.7 6.5 0.00022 46.9 9.6 27 592-618 647-675 (861)
56 3jvl_A Bromodomain-containing 76.4 0.15 5E-06 46.9 -3.8 54 39-97 44-97 (120)
57 2i7k_A Bromodomain-containing 73.3 0.2 6.8E-06 46.1 -3.7 55 38-97 37-91 (117)
58 3p1f_A CREB-binding protein; s 73.0 0.22 7.6E-06 45.6 -3.4 54 39-97 44-97 (119)
59 2grc_A Probable global transcr 72.2 0.19 6.6E-06 46.9 -4.1 55 38-97 47-101 (129)
60 3mqm_A Probable histone-lysine 71.3 0.26 9E-06 45.6 -3.4 54 39-97 45-98 (126)
61 3fkm_X Signaling protein; brom 71.2 0.23 7.9E-06 48.4 -4.0 55 38-97 52-106 (166)
62 3iu5_A Protein polybromo-1; PB 69.4 0.24 8E-06 45.3 -4.1 54 39-97 41-94 (116)
63 3ryc_E Stathmin-4; alpha-tubul 68.7 10 0.00036 36.1 6.9 38 645-682 48-85 (143)
64 3g0l_A Hwalp4, bromodomain adj 68.2 0.33 1.1E-05 44.3 -3.4 53 39-96 43-95 (117)
65 3tlp_A Protein polybromo-1; PB 68.0 0.28 9.5E-06 46.8 -4.1 54 39-97 61-114 (150)
66 3ljw_A Protein polybromo-1; al 67.1 0.24 8.3E-06 45.5 -4.6 54 39-97 44-97 (120)
67 3nxb_A CAT eye syndrome critic 67.0 0.25 8.4E-06 45.1 -4.5 53 39-96 46-98 (116)
68 3k2j_A Protein polybromo-1; PB 66.1 0.31 1.1E-05 45.6 -4.1 53 39-96 53-105 (130)
69 3mb4_A Protein polybromo-1; PB 65.8 0.28 9.4E-06 45.4 -4.5 54 39-97 51-104 (124)
70 3mb3_A PH-interacting protein; 64.8 0.44 1.5E-05 44.6 -3.4 50 38-92 50-99 (135)
71 2ri7_A Nucleosome-remodeling f 62.1 0.37 1.3E-05 46.8 -4.6 55 38-97 101-155 (174)
72 2yyn_A Transcription intermedi 59.2 0.64 2.2E-05 43.7 -3.4 54 39-97 49-104 (135)
73 1ij5_A Plasmodial specific LAV 57.0 12 0.0004 39.6 5.5 19 643-661 40-58 (323)
74 2dkw_A Hypothetical protein KI 57.0 0.37 1.3E-05 45.2 -5.4 51 39-94 37-87 (131)
75 3q2e_A Bromodomain and WD repe 55.4 0.78 2.7E-05 42.3 -3.4 49 39-92 40-88 (123)
76 3dai_A ATPase family AAA domai 54.9 0.89 3.1E-05 42.3 -3.1 51 38-93 39-89 (130)
77 4f6r_C Stathmin-like domain R1 50.2 26 0.00088 30.7 5.5 33 645-677 47-79 (87)
78 1f5n_A Interferon-induced guan 44.6 30 0.001 40.0 6.8 33 623-655 495-527 (592)
79 3etw_A Adhesin A; antiparallel 44.1 1.1E+02 0.0037 28.3 9.0 27 632-658 16-42 (119)
80 2b5u_A Colicin E3; high resolu 41.9 30 0.001 39.1 5.8 6 679-684 355-360 (551)
81 3v6i_A V-type ATP synthase sub 41.6 1.3E+02 0.0043 29.1 9.9 13 676-688 84-96 (187)
82 3rk3_E Complexin-1; snare prot 40.0 73 0.0025 25.9 6.2 15 669-683 33-47 (63)
83 2i1j_A Moesin; FERM, coiled-co 39.4 25 0.00086 40.5 5.0 11 599-609 291-301 (575)
84 3o36_A Transcription intermedi 38.7 2.2 7.6E-05 41.7 -3.4 50 39-93 110-161 (184)
85 1go4_E MAD1 (mitotic arrest de 38.5 1.2E+02 0.0041 27.2 8.1 25 626-650 16-43 (100)
86 1lsh_B Lipovitellin (LV-2); vi 33.8 8.7 0.0003 41.2 0.0 10 741-750 296-305 (319)
87 1kil_E Complexin I snare-compl 32.7 55 0.0019 25.5 4.2 16 668-683 29-44 (49)
88 2i1j_A Moesin; FERM, coiled-co 31.7 32 0.0011 39.6 4.3 16 673-688 384-399 (575)
89 4f61_I Stathmin-like domain R4 31.7 62 0.0021 33.2 5.8 36 647-682 49-84 (240)
90 2zuo_A MVP, major vault protei 30.6 2.3E+02 0.0078 34.1 11.1 7 739-745 821-827 (861)
91 3adg_A F21M12.9 protein; HYL1, 26.9 36 0.0012 28.0 2.7 15 672-686 58-72 (73)
92 1lsh_B Lipovitellin (LV-2); vi 24.5 16 0.00054 39.2 0.0 9 739-747 245-253 (319)
93 2p4v_A Transcription elongatio 24.3 62 0.0021 31.0 4.1 26 625-650 12-37 (158)
94 3u5n_A E3 ubiquitin-protein li 23.6 3.6 0.00012 41.1 -5.0 49 39-92 110-161 (207)
95 1ij5_A Plasmodial specific LAV 22.7 1.3E+02 0.0043 31.5 6.6 44 618-661 35-80 (323)
96 2b7v_A Double-stranded RNA-spe 22.0 52 0.0018 26.8 2.7 18 670-687 51-68 (71)
97 1di2_A XLRBPA, double stranded 21.3 56 0.0019 26.5 2.7 16 671-686 53-68 (69)
98 3adj_A F21M12.9 protein; HYL1, 21.2 55 0.0019 27.2 2.7 17 670-686 57-73 (76)
99 2eqb_B RAB guanine nucleotide 20.9 3.6E+02 0.012 24.0 8.0 34 624-657 7-43 (97)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.94 E-value=8.2e-27 Score=216.86 Aligned_cols=103 Identities=39% Similarity=0.697 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
...++.|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 283 PPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
+++|.||.+|..|++.|++.|+++-
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 2
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.94 E-value=5.4e-27 Score=221.44 Aligned_cols=105 Identities=37% Similarity=0.688 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...+...|..||..|++|+.+|+|..|||+.++.+||||+||++||||+||++||.+|.|.++.+|.+||+|||+||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|++||.||.+|..|++.|++.|+.+
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.94 E-value=3.9e-27 Score=223.26 Aligned_cols=105 Identities=42% Similarity=0.790 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHcCCC---CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 004051 202 NAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~---s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA 278 (776)
....++.|..||..|+.++. +|+|..|||+..+++||||+||++||||+||++||.+|.|.++.+|.+||+|||.||
T Consensus 20 ~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 99 (130)
T 2ouo_A 20 VSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNC 99 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46678999999999999874 899999999998889999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 279 MTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 279 ~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
++||+++|.||.+|..|++.|+.+|+.|
T Consensus 100 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 100 YKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999864
No 4
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1e-26 Score=229.00 Aligned_cols=109 Identities=33% Similarity=0.532 Sum_probs=99.5
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 004051 198 ASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (776)
Q Consensus 198 ~~~~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~N 277 (776)
..+....|.+.|..||..|++++.+|+|..||++.++.+||||+||++||||+||++||.++.|.++.+|..||+|||.|
T Consensus 15 ~~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (166)
T 3fkm_X 15 YFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDN 94 (166)
T ss_dssp --CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 278 A~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|++||+++|.||.+|..|+++|++.|+.+
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 95 CSLYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHHSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999875
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=1.3e-26 Score=214.05 Aligned_cols=103 Identities=33% Similarity=0.574 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...|...|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|+++|.+|.+|..|++.|++.|+++
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999875
No 6
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=1.3e-26 Score=225.79 Aligned_cols=107 Identities=36% Similarity=0.636 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
....+...|..||+.|++|+.+|+|..||++.++++||||+||++||||+||++||+++.|.++.+|.+||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44788889999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 281 YNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
||++++.||.+|..|+++|++.|+.+.
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999998653
No 7
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.93 E-value=2.5e-26 Score=214.20 Aligned_cols=109 Identities=35% Similarity=0.542 Sum_probs=103.9
Q ss_pred chHHHHHHHHHHHHHHHc-CCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 004051 201 SNAMLMKQCENLLTRLMS-HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~-~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 279 (776)
....+.+.|..+|..|++ ++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||+||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999998 7899999999999888899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 280 TYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (776)
Q Consensus 280 ~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k 309 (776)
+||+++|.||.+|..|++.|++.|..+...
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.93 E-value=8.7e-27 Score=217.59 Aligned_cols=106 Identities=42% Similarity=0.784 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~---s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~N 277 (776)
....+++.|..||..|++++. +|+|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999987 99999999999777999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 278 A~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|++||+++|.||.+|..|++.|++.|+.+
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999998764
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=3.6e-26 Score=214.06 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
..+...|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
+++|.+|.+|..|++.|+..|..+...+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~ 111 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQA 111 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 10
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=215.05 Aligned_cols=109 Identities=34% Similarity=0.631 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
....|++.|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 84 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKA 84 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999977 8999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004051 281 YNPP-QNDVHIMADTLRKYFEVRWKAIEKKLP 311 (776)
Q Consensus 281 YN~~-gS~Vy~~A~~Le~~Fe~~~k~i~~k~p 311 (776)
||++ +|.||.+|..|++.|+++|+.+...+.
T Consensus 85 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 85 YTPNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp HSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 999999999999999999999977664
No 11
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=214.44 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004051 201 SNAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLI 274 (776)
....+.+.|..||+.|++|+ .+|+|..||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+||
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 87 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLL 87 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34789999999999999986 689999999854 8999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 275 F~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|.||++||++++.||.+|..|+++|++.|+.+
T Consensus 88 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 88 CHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988753
No 12
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=218.32 Aligned_cols=108 Identities=31% Similarity=0.595 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
....|.+.|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999975 8999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 281 YNPP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 281 YN~~-gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
||++ +|.||.+|..|+++|++.|..+...+
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 99999999999999999999876543
No 13
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=6.6e-26 Score=214.51 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHHcCC-------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004051 201 SNAMLMKQCENLLTRLMSHQ-------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRL 273 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~-------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrL 273 (776)
....+.+.|..||+.|++++ .+++|..||+. ..+||||+||++||||+||++||.+|.|.++.+|.+||+|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34789999999999999875 58999999985 4899999999999999999999999999999999999999
Q ss_pred HhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 274 TFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (776)
Q Consensus 274 IF~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k 309 (776)
||+||++||+++|.||.+|..|++.|++.|+.|...
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999998754
No 14
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=4.1e-26 Score=213.69 Aligned_cols=101 Identities=36% Similarity=0.598 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 004051 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 284 (776)
+...|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3689999999999999999999999965 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 004051 285 QNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 285 gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
+|.||.+|..|++.|++.|+.+.
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998763
No 15
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=8.8e-26 Score=210.36 Aligned_cols=104 Identities=27% Similarity=0.340 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
....+...|..||..|++++.+++|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999964 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
||++||.+|.+|..|++.|++.|..+
T Consensus 83 yN~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 83 YNKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875
No 16
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.93 E-value=4.9e-26 Score=211.33 Aligned_cols=101 Identities=27% Similarity=0.495 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
..+.+.|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 447899999999999999999999999977 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 004051 283 PPQNDVHIMADTLRKYFEVRWKA 305 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~k~ 305 (776)
+++|.||.+|..|++.|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998863
No 17
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=9.4e-26 Score=215.05 Aligned_cols=104 Identities=38% Similarity=0.678 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHhhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSNA 278 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~--~~Y~S~~eF~~DvrLIF~NA 278 (776)
.....++.|..||..|++|+.+|+|..||+. .+||||+||++||||+||++||.+ +.|.++.+|.+||+|||.||
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999985 599999999999999999999998 59999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 279 ~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
++||+++|.||.+|..|++.|+++|+++.
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999874
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.92 E-value=8.7e-26 Score=212.14 Aligned_cols=103 Identities=23% Similarity=0.406 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHc------CCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 203 AMLMKQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~------~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
..+.+.|..||+.|++ |+.+++|..||+.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999998 56689999999855 899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 277 NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
||++||+++|.||.+|..|++.|++.|+++.
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999874
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=211.59 Aligned_cols=107 Identities=26% Similarity=0.420 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...+...|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
|+++|.+|.+|..|++.|+..|+.+...+
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876543
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.92 E-value=2.1e-25 Score=208.44 Aligned_cols=109 Identities=33% Similarity=0.474 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHHHHHcCCC------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004051 201 SNAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~------s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLI 274 (776)
....|.+.|..|++.|.+++. +++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+||
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 82 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLL 82 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 357889999999999998866 99999998854 8999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004051 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLP 311 (776)
Q Consensus 275 F~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~p 311 (776)
|.||++||++||.||.+|..|++.|++.|++|+...+
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~~~ 119 (120)
T 3ljw_A 83 AKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEM 119 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999986543
No 21
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.92 E-value=7e-26 Score=238.25 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=149.8
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHH
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eL 117 (776)
.+|+|+.+|..||+.. ++-.|++++.|.+-+.-..+-+.|--| |..||-|.-.|. .--+.|..-+...+
T Consensus 43 ~~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~i~------~~A~~l~~~~~~~~ 111 (265)
T 3uv5_A 43 VVKDYYKIITRPMDLQ--TLRENVRKRLYPSREEFREHLELIVKN---SATYNGPKHSLT------QISQSMLDLCDEKL 111 (265)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHHCTTCHHH------HHHHHHHHHHHHHH
T ss_pred hcCCHHHHhCCCCcHH--HHHHHHHcCCCCCHHHHHHHHHHHHhh---hhhcCCCCChHH------HHHHHHHHHHHHHH
Confidence 4899999999999987 899999999999888877666666555 888997654444 11233443333333
Q ss_pred HHHHHHHHHhhhccCCcccCCCCCcccCCCCCCCCCccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004051 118 EQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGA 197 (776)
Q Consensus 118 eqvR~l~kki~~~~~~~vlsp~~~~~s~~~~~~~~~~~s~~~~s~s~~~~~kKr~~~~~~~r~~kr~~~~r~~p~k~~~~ 197 (776)
.+...-..+++..- .|. .
T Consensus 112 ~~~~~~~~~~ek~i-----~p~-----------------------------------~---------------------- 129 (265)
T 3uv5_A 112 KEKEDKLARLEKAI-----NPL-----------------------------------L---------------------- 129 (265)
T ss_dssp HHTHHHHHHHHHHH-----STT-----------------------------------T----------------------
T ss_pred HHHhhhhhhhhhhh-----hhc-----------------------------------c----------------------
Confidence 33222222222110 000 0
Q ss_pred CCCchHHHHHHHHHHHHH-HHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 198 ASSSNAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 198 ~~~~~~~l~k~c~~IL~~-L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
.......+...|..|+.. |+.|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 130 dd~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~ 207 (265)
T 3uv5_A 130 DDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILA 207 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 000123455566666654 78899999999999976 799999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 277 NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
||++||+++|.||.+|..|+..|+..|+.+...+
T Consensus 208 Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~~~ 241 (265)
T 3uv5_A 208 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 241 (265)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=206.43 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
...+..|..|++.|++++ .+++|..||+. ..+||||++|++||||+||++||+++.|.++.+|..||+|||.
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 81 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKR--RNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFN 81 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCG--GGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCc--ccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999884 59999999884 4899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004051 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (776)
Q Consensus 277 NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~ 308 (776)
||++||+++|.||.+|..|++.|++.|+++..
T Consensus 82 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 82 NAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864
No 23
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=4.3e-25 Score=207.28 Aligned_cols=102 Identities=31% Similarity=0.395 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
..+...|..||..|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 283 PPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
+++|.||.+|..|++.|++.|.+.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 24
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=3.9e-25 Score=208.22 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 004051 202 NAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF 275 (776)
...+.+.|..|++.|+++. .+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999875 499999999966 89999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 276 ~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
.||++||+++|.||.+|..|++.|++.|+++...+
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887655
No 25
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=207.05 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004051 201 SNAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLI 274 (776)
....+..+|..|++.|.++. .+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|..||+||
T Consensus 14 ~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Li 91 (130)
T 3k2j_A 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLM 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34788999999999999874 499999999854 9999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (776)
Q Consensus 275 F~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k 309 (776)
|.||++||+++|.||.+|..|++.|++.|+++...
T Consensus 92 f~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 92 FENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998754
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=2.7e-24 Score=210.23 Aligned_cols=107 Identities=28% Similarity=0.505 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHH-HHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 202 NAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 202 ~~~l~k~c~~IL~~-L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
...+...+..|+.. |+.++.+|+|..||++. .+||||+||++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455555555554 66789999999999966 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 281 YNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
||+++|.||.+|..|.+.|+..|+++...+
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=2.9e-24 Score=212.12 Aligned_cols=104 Identities=31% Similarity=0.547 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 280 (776)
.....++.|..||..|++|+.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||+||++
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 146 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRY 146 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
||+++|.||.+|..|+++|+++|+.|
T Consensus 147 yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 147 YNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988754
No 28
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.90 E-value=8.8e-25 Score=232.94 Aligned_cols=198 Identities=21% Similarity=0.339 Sum_probs=142.6
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHH
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eL 117 (776)
.+|+|+.+|..||+.. ++-.|++++.|.+-.....+-+.|.-| |..||-+.-.+.. -.+.|...+...+
T Consensus 76 ~~pdY~~iIk~PmDL~--tIk~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~~------~A~~L~~~~~~~~ 144 (292)
T 3aad_A 76 VVKDYYKIITRPMDLQ--TLRENVRKRLYPSREEFREHLELIVKN---SATYNGPKHSLTQ------ISQSMLDLCDEKL 144 (292)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHTCSSSHHHH------HHTHHHHTTTTTG
T ss_pred hcccHHHHcCCcCCHH--HHHHHhhCCCcCCHHHHHHHHHHHHHH---HHHHcCCchHHHH------HHHHHHHHHHhhh
Confidence 4689999999999988 899999999999888776666665544 8889976543330 1112222222111
Q ss_pred HHHHHHHHHhhhccCCcccCCCCCcccCCCCCCCCCccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004051 118 EQVRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGGPSVVLAPKGKKRAPNGRNGPQTKKGNSGRLEPKKPAGA 197 (776)
Q Consensus 118 eqvR~l~kki~~~~~~~vlsp~~~~~s~~~~~~~~~~~s~~~~s~s~~~~~kKr~~~~~~~r~~kr~~~~r~~p~k~~~~ 197 (776)
...+.-..+++. . ++|. ..
T Consensus 145 ~~~~~~~~~~e~-~----i~Pl----------------------------------~d---------------------- 163 (292)
T 3aad_A 145 KEKEDKLARLEK-A----INPL----------------------------------LD---------------------- 163 (292)
T ss_dssp GGSHHHHHHHHH-T----TSSS----------------------------------TT----------------------
T ss_pred hcchhhhhhhhh-c----cccc----------------------------------cc----------------------
Confidence 111111111110 0 0000 00
Q ss_pred CCCchHHHHHHHHHHH-HHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 198 ASSSNAMLMKQCENLL-TRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 198 ~~~~~~~l~k~c~~IL-~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
......+...+..++ ..|+.++.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 164 -d~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~ 240 (292)
T 3aad_A 164 -DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILA 240 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred -cchhHHHHHHHHHHhhhhhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 000012333444444 3478899999999999965 899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 277 NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
||++||+++|.||.+|..|++.|+..|..+...+
T Consensus 241 Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~l 274 (292)
T 3aad_A 241 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 274 (292)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.90 E-value=1.7e-23 Score=208.75 Aligned_cols=104 Identities=38% Similarity=0.687 Sum_probs=98.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHhhh
Q 004051 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSN 277 (776)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~--~~Y~S~~eF~~DvrLIF~N 277 (776)
.....+++.|..||..|+.|+.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||.|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999984 499999999999999999999998 7899999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004051 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 278 A~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
|++||++++.||.+|..|+++|++.|+++
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876
No 30
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=203.03 Aligned_cols=101 Identities=25% Similarity=0.378 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCC-------CccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 004051 205 LMKQCENLLTRLMSHQF-------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (776)
Q Consensus 205 l~k~c~~IL~~L~~~~~-------s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~N 277 (776)
...+|..|+..|+++.. +++|..||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46788888888887643 89999998854 8999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 278 A~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
|++||+++|.||.+|..|+++|++.|+++.
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 132 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELG 132 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999875
No 31
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.89 E-value=2.9e-23 Score=196.51 Aligned_cols=101 Identities=35% Similarity=0.411 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...+...|..++..|+.|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999977 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH
Q 004051 282 NPPQNDV----HIMADTLRKYFEVRWK 304 (776)
Q Consensus 282 N~~gS~V----y~~A~~Le~~Fe~~~k 304 (776)
|+++|++ |.+|..|++.|...++
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 7888888888887775
No 32
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.89 E-value=1.1e-23 Score=230.68 Aligned_cols=86 Identities=30% Similarity=0.492 Sum_probs=83.0
Q ss_pred cCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 004051 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRK 297 (776)
Q Consensus 218 ~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~ 297 (776)
.|+.+|+|..||++. .+||||+||++||||+||++||.++.|.++.+|.+||+|||+||++||+++|.||.+|..|++
T Consensus 227 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 304 (361)
T 2r10_A 227 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 304 (361)
T ss_dssp SSCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 367899999999976 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004051 298 YFEVRWKA 305 (776)
Q Consensus 298 ~Fe~~~k~ 305 (776)
+|+..|+.
T Consensus 305 ~f~~~~~~ 312 (361)
T 2r10_A 305 YFNYLIQK 312 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 33
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.88 E-value=1e-23 Score=226.53 Aligned_cols=86 Identities=30% Similarity=0.492 Sum_probs=83.0
Q ss_pred cCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 004051 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRK 297 (776)
Q Consensus 218 ~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~gS~Vy~~A~~Le~ 297 (776)
.|+.+|+|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||+||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 467899999999976 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004051 298 YFEVRWKA 305 (776)
Q Consensus 298 ~Fe~~~k~ 305 (776)
+|+..|+.
T Consensus 255 ~f~~~~~~ 262 (311)
T 2r0y_A 255 YFNYLIQK 262 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.88 E-value=7.3e-23 Score=205.46 Aligned_cols=100 Identities=21% Similarity=0.311 Sum_probs=94.1
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcC--CCCCHHHHHHHHhCC---CCCCHHHHHHHHHHHh
Q 004051 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIK--HPMDLGTIKCKITSG---QYSDPLAFAADVRLTF 275 (776)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk--~PMDL~TIkkKL~~~---~Y~S~~eF~~DvrLIF 275 (776)
.....++.|..||..|+.|+.+|+|++||+ |+||.||+ +||||+||++||+++ .|.++.+|++||+|||
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif 146 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMF 146 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHH
Confidence 456678899999999999999999999998 67999998 899999999999999 9999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 276 ~NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
+||++|| +++.||.+|..|+++|+++|+++.
T Consensus 147 ~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~ 177 (189)
T 2ro1_A 147 KQFNKLT-EDKADVQSIIGLQRFFETRMNEAF 177 (189)
T ss_dssp HHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 589999999999999999999874
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=1.2e-22 Score=213.55 Aligned_cols=106 Identities=25% Similarity=0.464 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 004051 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 282 (776)
..|...|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||+||++||
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcC
Confidence 578999999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 004051 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (776)
Q Consensus 283 ~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~ 310 (776)
+++|.||.+|..|.+.|++.|+++..++
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 118 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKEKEDKL 118 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999876543
No 36
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.87 E-value=2.3e-22 Score=204.23 Aligned_cols=104 Identities=36% Similarity=0.637 Sum_probs=98.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHhh
Q 004051 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~---~~Y~S~~eF~~DvrLIF~ 276 (776)
.....+++.|..||..|++|+.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||+
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~ 153 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFK 153 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHH
Confidence 35577899999999999999999999999985 599999999999999999999997 799999999999999999
Q ss_pred hhhhcCC-----------------CCCHHHHHHHHHHHHHHHHHHHH
Q 004051 277 NAMTYNP-----------------PQNDVHIMADTLRKYFEVRWKAI 306 (776)
Q Consensus 277 NA~~YN~-----------------~gS~Vy~~A~~Le~~Fe~~~k~i 306 (776)
||++||+ +++.|+.+|..|+.+|+.+|+++
T Consensus 154 Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 154 NCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999999999999999987
No 37
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=190.42 Aligned_cols=98 Identities=31% Similarity=0.429 Sum_probs=91.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 004051 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (776)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 279 (776)
.....+...|..||+.|++|+.+|+|..| +||||+||++||||+||++||.++.|.++.+|.+||+|||.||+
T Consensus 8 ~~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~ 80 (131)
T 2dkw_A 8 NTLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNAL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999997 89999999999999999999999999999999999999999999
Q ss_pred hcCCCCCH----HHHHHHHHHHHHHHHHH
Q 004051 280 TYNPPQND----VHIMADTLRKYFEVRWK 304 (776)
Q Consensus 280 ~YN~~gS~----Vy~~A~~Le~~Fe~~~k 304 (776)
+||+++|+ ||.+|..|++.|...++
T Consensus 81 ~yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 81 EYNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp HSCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999995 57899999999887764
No 38
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=2.8e-22 Score=213.70 Aligned_cols=105 Identities=23% Similarity=0.438 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...+...|..||+.|++|+.+|+|..||++. .+||||+||++||||+||++||+++.|.++.+|.+||+|||+||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKAIEK 308 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~i~~ 308 (776)
|++++.||.+|..|.+.|++.|+.+..
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~ 149 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKED 149 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHH
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchh
Confidence 999999999999999999988876543
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.78 E-value=3.9e-19 Score=194.62 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcC--CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhhh
Q 004051 204 MLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAMT 280 (776)
Q Consensus 204 ~l~k~c~~IL~~L~~~--~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~-S~~eF~~DvrLIF~NA~~ 280 (776)
.+...|..+|+.|.+. ..+++|..||+ +..+||||+||++||||+||++|| +.|. ++.+|.+||+|||+||++
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~--~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCC--TTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCC--cccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 4567899999998764 45899999988 458999999999999999999998 4555 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 281 YNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 281 YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
||++||.||.+|..|+++|+..|.+..
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999998764
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.75 E-value=9.3e-19 Score=188.05 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHcC--CCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhh
Q 004051 203 AMLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAM 279 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~--~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~-S~~eF~~DvrLIF~NA~ 279 (776)
..|...|..+|..+... ..+++|..||+ +..+||||+||++||||+||++|| +.|. ++.+|.+||+|||+||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~--~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCC--TTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCC--cccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 34667777777777653 46899999988 458999999999999999999999 5555 89999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004051 280 TYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (776)
Q Consensus 280 ~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~ 307 (776)
+||++||.||.+|..|+++|+..|.+..
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998764
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=156.81 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 004051 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (776)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~------~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~ 276 (776)
..++..+..|+..+++|. .+.+|... |.+. |+||. ++||+|.+|++||.+|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~L--Psk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEI--PAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTC--CSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHC--CCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 457788999999999985 47889984 4443 89998 999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 004051 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (776)
Q Consensus 277 NA~~YN~~gS~Vy~~A~~Le~~Fe~~~k~i~~k 309 (776)
||++||.+||+||.+|..|+++|...+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998766
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=3e-15 Score=133.29 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=67.9
Q ss_pred cccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhcc-CC-CCCCCeEEEEccCCCHHHHHHHHHHHHHHHHHH
Q 004051 351 KAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHS-AG-ETGEDELEIDIDALSDDTLFALRKLLDDYLLEK 425 (776)
Q Consensus 351 ~~ep~kr~mT~eEK~kL~~~I~~Lp~E~l~~Iv~IIkk~~-~~-~~~~dEIEIDId~L~~~TL~eL~~~V~~~L~ek 425 (776)
..++.+++||++||++|+.+|+.||++++.+||+||++++ .. ...++||||||+.|++.|||+|++||.+||+.+
T Consensus 10 ~~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 10 EEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp TTTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 3556789999999999999999999999999999999998 33 357899999999999999999999999998764
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.42 E-value=2.4e-13 Score=135.65 Aligned_cols=98 Identities=18% Similarity=0.282 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCCccccCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 004051 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (776)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~s~~F~~PVdp~k~~~PDYy~iIk~PMDL~TIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 281 (776)
...+...+..||..|..|+.+++|+.. .++.||||.||++||+.|.|.++.+|..||.|||.||..|
T Consensus 73 ~~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 73 EKELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 356777889999999999999999862 2599999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004051 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKLPV 312 (776)
Q Consensus 282 N~~gS~Vy~~A~~Le~~Fe~~~k~i~~k~p~ 312 (776)
|.+.+.+..++..|+.+|++.++.+-..++.
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 9999999999999999999999887555543
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=93.27 E-value=0.11 Score=48.26 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhhcc-cChHHHHHHHhhccCCCCCCCeEEEEccCCCHHHHHHHHHHHH
Q 004051 360 TNEEKRILSTELEALLE-ELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLD 419 (776)
Q Consensus 360 T~eEK~kL~~~I~~Lp~-E~l~~Iv~IIkk~~~~~~~~dEIEIDId~L~~~TL~eL~~~V~ 419 (776)
-.+|-+.|...|..|.. +.+.+||++|.+...+...+..+.||+.+||..|+++|+.|+.
T Consensus 60 y~~~L~~l~~rim~l~d~~~lq~iv~li~~tG~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 60 YLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp THHHHHHHHHHHHTCCCCSSHHHHHHHHHTSCCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhcCceeeecccccceeeccCHHHHHHHHHHHH
Confidence 46778899999999987 6699999999998888888999999999999999999999853
No 45
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.68 E-value=0.015 Score=53.84 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=62.5
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHH
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eL 117 (776)
-+|+|+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| |..||-|.-.+. ...+.|.+.....|
T Consensus 36 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~~~------~~A~~L~~~~~~~l 104 (121)
T 2d9e_A 36 EVPDYLDHIKKPMDFF--TMKQNLEAYRYLNFDDFEEDFNLIVSN---CLKYNAKDTIFY------RAAVRLREQGGAVL 104 (121)
T ss_dssp TCTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH------HHHHHHHHHHHHHH
T ss_pred ccCCHHHHcCCCcCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 3799999999999988 899999999999888876666665544 889997754443 34567777778888
Q ss_pred HHHHHHHHHhhh
Q 004051 118 EQVRVLQKKVAS 129 (776)
Q Consensus 118 eqvR~l~kki~~ 129 (776)
.++|...++...
T Consensus 105 ~~~~~~~~~~~~ 116 (121)
T 2d9e_A 105 RQARRQAEKMGS 116 (121)
T ss_dssp HHHHHHHHHTSB
T ss_pred HHHHHHHHHcCC
Confidence 888876666533
No 46
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=86.84 E-value=0.062 Score=50.47 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=62.7
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHHH
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eLe 118 (776)
+|||+.+|..||+.. ++-.|++++.|.+-+.-..+-+.|--| |..||-|.-.+. ...+.|.+.+...++
T Consensus 43 ~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~------~~A~~L~~~~~~~~~ 111 (135)
T 3rcw_A 43 VPDYLDHIKHPMDFA--TMRKRLEAQGYKNLHEFEEDFDLIIDN---CMKYNARDTVFY------RAAVRLRDQGGVVLR 111 (135)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH------HHHHHHHHHHHHHHH
T ss_pred cCCHHHHhCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 799999999999988 899999999999888876665555544 888996654443 345677777777777
Q ss_pred HHHHHHHHhhhccCCc
Q 004051 119 QVRVLQKKVASLSSNV 134 (776)
Q Consensus 119 qvR~l~kki~~~~~~~ 134 (776)
++|.-..++......|
T Consensus 112 ~~~~~~~~~~~~~~~~ 127 (135)
T 3rcw_A 112 QARREVDSIGLEEASG 127 (135)
T ss_dssp HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHccCCcCCC
Confidence 7777666665544443
No 47
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.67 E-value=0.041 Score=51.01 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=44.1
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.. ++-.|+++..|.+-+....+-+.|--| |..||-+.-.+.
T Consensus 49 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~ 102 (123)
T 2dat_A 49 LPEYYELIRKPVDFK--KIKERIRNHKYRSLGDLEKDVMLLCHN---AQTFNLEGSQIY 102 (123)
T ss_dssp SCHHHHHCSSCCCHH--HHHHHHTTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999988 899999999999988877665555444 889997764444
No 48
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=83.14 E-value=0.06 Score=49.93 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=55.3
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHH
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eL 117 (776)
-+|+|+.+|..||+.+ ++-.|++++.|.+-+.-..+-+.|--| |..||-|.-.+. ...+.|.+.....+
T Consensus 42 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~------~~A~~L~~~~~~~~ 110 (123)
T 3hme_A 42 IAPGYSMIIKHPMDFG--TMKDKIVANEYKSVTEFKADFKLMCDN---AMTYNRPDTVYY------KLAKKILHAGFKMM 110 (123)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH------HHHHHHHHHHHHHT
T ss_pred hccCHHHHCCCCCCHH--HHHHHhccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999988 899999999999888877666666555 889997765444 33455555555555
Q ss_pred HHHHHH
Q 004051 118 EQVRVL 123 (776)
Q Consensus 118 eqvR~l 123 (776)
++.|.+
T Consensus 111 ~~~~~~ 116 (123)
T 3hme_A 111 SKERLL 116 (123)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 555543
No 49
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=82.14 E-value=0.079 Score=51.11 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=55.9
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHHH
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLE 118 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eLe 118 (776)
+|+|+.+|..||+.. ++-.|+++.+|.+-+....+-+.|--| |..||-+.-.|. +....|+
T Consensus 64 ~PdY~~iIk~PMDL~--tI~~kl~~~~Y~s~~ef~~Dv~Lif~N---a~~YN~~~s~i~--------------~~A~~L~ 124 (154)
T 4alg_A 64 LPDYHKIIKQPMDMG--TIKRRLENNYYWAASECMQDFNTMFTN---CYIYNKPTDDIV--------------LMAQTLE 124 (154)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH--------------HHHHHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH--------------HHHHHHH
Confidence 799999999999988 899999999999988887666666555 889997754444 5555555
Q ss_pred HHHHHHHHhhhccC
Q 004051 119 QVRVLQKKVASLSS 132 (776)
Q Consensus 119 qvR~l~kki~~~~~ 132 (776)
+.+.+++...+.
T Consensus 125 --~~f~~~~~~l~~ 136 (154)
T 4alg_A 125 --KIFLQKVASMPQ 136 (154)
T ss_dssp --HHHHHHHTTSCS
T ss_pred --HHHHHHHHHCCc
Confidence 566677765443
No 50
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=81.66 E-value=0.081 Score=49.35 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=44.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
-+|||+.+|..||+.+ ++..|++++.|.+.+....+-+.|--| |-.||-+.-.+.
T Consensus 52 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 106 (127)
T 2oss_A 52 NLPDYYKIIKTPMDMG--TIKKRLENNYYWNAQECIQDFNTMFTN---CYIYNKPGDDIV 106 (127)
T ss_dssp TCTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTCHHH
T ss_pred cCccHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999988 899999999999988876666655544 889997764444
No 51
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=81.03 E-value=0.087 Score=49.34 Aligned_cols=54 Identities=7% Similarity=0.143 Sum_probs=44.2
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |-+||-+.-.+.
T Consensus 57 ~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~s~i~ 110 (130)
T 2ouo_A 57 LHDYCDIIKHPMDMS--TIKSKLEAREYRDAQEFGADVRLMFSN---CYKYNPPDHEVV 110 (130)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCcHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHcCCCCHHH
Confidence 699999999999988 899999999999988877666665544 889997754444
No 52
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=80.66 E-value=0.11 Score=50.31 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceeecccCCHHHHHHHHHHHHhHH
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDL 117 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~~s~~S~~e~~~L~~Rl~~eL 117 (776)
.+|+|+.+|..||+.. ++-.|+++..|.+-+.-..+-+.|--| |..||-|.-.|. ...+.|.+.+...+
T Consensus 59 ~~PdY~~iIk~PMDL~--tI~~kl~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i~------~~A~~L~~~~~~~l 127 (158)
T 3uv4_A 59 FVPDYYKVIVNPMDLE--TIRKNISKHKYQSRESFLDDVNLILAN---SVKYNGPESQYT------KTAQEIVNVCYQTL 127 (158)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHHCTTCHHH------HHHHHHHHHHHHHH
T ss_pred hcccHHHHcCCccCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH------HHHHHHHHHHHHHH
Confidence 4799999999999987 899999999999988876666666555 888997654444 22344555555555
Q ss_pred HHHHHHHHH
Q 004051 118 EQVRVLQKK 126 (776)
Q Consensus 118 eqvR~l~kk 126 (776)
..++.-...
T Consensus 128 ~e~~~~l~~ 136 (158)
T 3uv4_A 128 TEYDEHLTQ 136 (158)
T ss_dssp HHTHHHHHH
T ss_pred HHHHHHHHH
Confidence 444433333
No 53
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=78.42 E-value=0.12 Score=47.82 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=44.3
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
-+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |-.||-|.-.+.
T Consensus 42 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~i~ 96 (121)
T 1e6i_A 42 EVPDYYDFIKEPMDLS--TMEIKLESNKYQKMEDFIYDARLVFNN---CRMYNGENTSYY 96 (121)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred hCcCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999988 899999999999888876666655544 888997764443
No 54
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=77.88 E-value=0.12 Score=46.92 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=43.6
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCccccee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVL 96 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~ 96 (776)
-+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |-.||-|.-.+
T Consensus 36 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~li~~N---a~~yN~~~s~~ 89 (112)
T 3d7c_A 36 EAPDYYEVIRFPIDLK--TMTERLRSRYYVTRKLFVADLQRVIAN---CREYNPPDSEY 89 (112)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHH
T ss_pred cccCHHHHccCCcCHH--HHHHHHcCCCCcCHHHHHHHHHHHHHH---HHHHCCCCCHH
Confidence 3799999999999988 899999999999988776665555444 88899765433
No 55
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=77.71 E-value=6.5 Score=46.94 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=18.0
Q ss_pred hHHHHHHHhhc-cchhh-HHHHHHHHhhc
Q 004051 592 DKLYRAALLRN-RFADT-ILKAREKALEK 618 (776)
Q Consensus 592 ~k~~raa~lk~-rfadt-ilka~~k~l~~ 618 (776)
|...|.||-|+ ..|=- ..++||-+..|
T Consensus 647 Dqrtrd~LqkSVqlAiEItT~sqEa~Ar~ 675 (861)
T 2zuo_A 647 DQRTRDALQRSVQLAIEITTNSQEAAAKH 675 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 67788888887 55644 45677755545
No 56
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=76.38 E-value=0.15 Score=46.92 Aligned_cols=54 Identities=7% Similarity=0.149 Sum_probs=43.9
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |-.||-|.-.+.
T Consensus 44 ~pdY~~iI~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~~ 97 (120)
T 3jvl_A 44 LHDYCDIIKHPMDMS--TIKSKLESREYRDAQEFGADVRLMFSN---CYKYNPPDHEVV 97 (120)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999988 899999999999888876666665545 888996654444
No 57
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=73.32 E-value=0.2 Score=46.12 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=44.9
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
-+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 37 ~~pdY~~iIk~PMDL~--tI~~kl~~~~Y~s~~ef~~Dv~Li~~N---a~~yN~~~s~i~ 91 (117)
T 2i7k_A 37 IAPGYSMIIKHPMDFS--TMKEKIKNNDYQSIEELKDNFKLMCTN---AMIYNKPETIYY 91 (117)
T ss_dssp TSSSHHHHCSCCCCHH--HHHHHHTTTSCCSHHHHHHHHHHHHHH---HHHTSCSSSSHH
T ss_pred ccCCHHHHhCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999988 899999999999888876666665544 889997765444
No 58
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=72.96 E-value=0.22 Score=45.60 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=43.1
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |-.||-+.-.+.
T Consensus 44 ~pdY~~iI~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~i~ 97 (119)
T 3p1f_A 44 IPDYFDIVKNPMDLS--TIKRKLDTGQYQEPWQYVDDVWLMFNN---AWLYNRKTSRVY 97 (119)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHhcCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999988 899999999999888876665555544 888996654333
No 59
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=72.16 E-value=0.19 Score=46.85 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|..||+.+ ++..|++++.|.+-+....+-+.|--| |..||-+.-.+.
T Consensus 47 ~~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~Dv~Li~~N---a~~yN~~~s~i~ 101 (129)
T 2grc_A 47 ELPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---AQTFNLEGSLIY 101 (129)
T ss_dssp TCHHHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred cCCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999988 899999999999988876665555544 889997754443
No 60
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=71.34 E-value=0.26 Score=45.60 Aligned_cols=54 Identities=7% Similarity=-0.022 Sum_probs=43.5
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|||+.+|..||+.+ ++-.|++++.|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 45 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 98 (126)
T 3mqm_A 45 NADYYEKISDPLDLI--TIEKQILTGYYKTVEAFDADMLKVFRN---AEKYYGRKSPVG 98 (126)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHHTCCCSHHHHHHHHHHHHHH---HHHHHCTTSHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 599999999999988 899999999999888876666665544 888996654443
No 61
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=71.19 E-value=0.23 Score=48.41 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
.+|+|+.+|..||+.. ++-.|+++..|.+-+....+-+.|--| |..||-|.-.|.
T Consensus 52 ~~pdY~~iIk~PmDL~--tI~~kL~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i~ 106 (166)
T 3fkm_X 52 NCPDYYDVIKNPMSFS--CIKTKLKKGQYAYPSEFVKDVQLIFDN---CSLYNTSNSVVA 106 (166)
T ss_dssp -CCCGGGCCSSCCCHH--HHHHHHHHTCCCSHHHHHHHHHHHHHH---HHHSSCTTSHHH
T ss_pred cCCCHHHhcCCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 3799999999999988 899999999999988887666666555 889997754444
No 62
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=69.41 E-value=0.24 Score=45.28 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=43.8
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.+ ++-.|+++..|.+-+.-..+-+.|--| |-.||-|.-.+.
T Consensus 41 ~pdY~~iI~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 94 (116)
T 3iu5_A 41 QPDYYEVVSQPIDLM--KIQQKLKMEEYDDVNLLTADFQLLFNN---AKSYYKPDSPEY 94 (116)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHhCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 589999999999988 899999999999988887666666555 888996654333
No 63
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=68.73 E-value=10 Score=36.09 Aligned_cols=38 Identities=42% Similarity=0.508 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 645 LQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQAL 682 (776)
Q Consensus 645 l~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l 682 (776)
||.-.+|||+.|+-.||+--.-+..+||.++|..+.|+
T Consensus 48 IqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~ 85 (143)
T 3ryc_E 48 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAI 85 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445667777776666555555666666666666655
No 64
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=68.19 E-value=0.33 Score=44.31 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=43.1
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCccccee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVL 96 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~ 96 (776)
+|+|+.+|..||+.+ ++-.|++++.|.+-+.-..+-+.|--| |-.||-|.-.+
T Consensus 43 ~pdY~~~I~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~ 95 (117)
T 3g0l_A 43 VPGYKKVIKKPMDFS--TIREKLSSGQYPNLETFALDVRLVFDN---CETFNEDDSDI 95 (117)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCSSSHH
T ss_pred cCChHHHcCCCCCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHH
Confidence 799999999999988 899999999999888876666665545 88899665333
No 65
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=67.96 E-value=0.28 Score=46.81 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=44.0
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.. ++-.|++++.|.+-+....+-+.|--| |-.||-+.-.|.
T Consensus 61 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~ef~~D~~li~~N---a~~yN~~~s~i~ 114 (150)
T 3tlp_A 61 YPDYYKIILEPMDLK--IIEHNIRNDKYAGEEGMIEDMKLMFRN---ARHYNEEGSQVY 114 (150)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CcCHHHHhCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999988 899999999999988887666665544 888997654443
No 66
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=67.06 E-value=0.24 Score=45.50 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.+ ++-.|++++.|.+-+.-..+-+.|--| |-.||-|.-.+.
T Consensus 44 ~pdY~~iIk~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 97 (120)
T 3ljw_A 44 YPDYYAIIKEPIDLK--TIAQRIQNGSYKSIHAMAKDIDLLAKN---AKTYNEPGSQVF 97 (120)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHHTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCChHHHcCCCCCHH--HHHHHHccCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999987 899999999999888876666666555 888997654443
No 67
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=67.03 E-value=0.25 Score=45.11 Aligned_cols=53 Identities=8% Similarity=0.179 Sum_probs=43.6
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCccccee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVL 96 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~ 96 (776)
+|+|+.+|..||+.+ ++-.|++++.|.+-+....+-+.|--| |-.||-|.-.+
T Consensus 46 ~pdY~~~I~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~~ 98 (116)
T 3nxb_A 46 APNYYQIIKAPMDIS--SMEKKLNGGLYCTKEEFVNDMKTMFRN---CRKYNGESSEY 98 (116)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHHCTTCHH
T ss_pred ccChHHHcCCCCCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHH
Confidence 799999999999988 899999999999988887666666555 88898665333
No 68
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=66.08 E-value=0.31 Score=45.61 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=43.2
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCccccee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVL 96 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~ 96 (776)
+|+|+.+|..||+.. ++..|+++..|.+-+.-..+-+.|--| |-.||-|.-.+
T Consensus 53 ~PdY~~iIk~PMdL~--tI~~kL~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i 105 (130)
T 3k2j_A 53 YPDYYQQIKMPISLQ--QIRTKLKNQEYETLDHLECDLNLMFEN---AKRYNVPNSAI 105 (130)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCTTSHH
T ss_pred CccHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHH
Confidence 699999999999988 899999999999888877666666555 88899665333
No 69
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=65.83 E-value=0.28 Score=45.40 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.+ ++-.|++++.|.+-+.-..+-+.|--| |..||-|.-.+.
T Consensus 51 ~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~s~i~ 104 (124)
T 3mb4_A 51 LPDYYLTIKKPMDME--KIRSHMMANKYQDIDSMVEDFVMMFNN---ACTYNEPESLIY 104 (124)
T ss_dssp CHHHHHHCSSCCCHH--HHHHHHHTTCCCSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred cCCHHHHcCCCCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 699999999999988 899999999999888876666665544 889997654444
No 70
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=64.78 E-value=0.44 Score=44.64 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=41.6
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcc
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~ 92 (776)
-+|||+.+|..||+.+ ++-.|++++.|.+-+.-..+-..|--| |-.||-|
T Consensus 50 ~~pdY~~iI~~Pmdl~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~ 99 (135)
T 3mb3_A 50 EYPDYRDIIDTPMDFA--TVRETLEAGNYESPMELCKDVRLIFSN---SKAYTPS 99 (135)
T ss_dssp TSTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCC
T ss_pred hCCCHHHHhCCCcCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 3799999999999988 899999999999888876665555544 8889965
No 71
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.14 E-value=0.37 Score=46.82 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=43.7
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccceee
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
-+|+|+.+|..||+.. ++..|++++.|.+-+.-..+-+.|--| +..||-+.-.+.
T Consensus 101 ~~pdY~~~I~~PmdL~--tI~~kl~~~~Y~s~~~f~~D~~li~~N---a~~yN~~~s~~~ 155 (174)
T 2ri7_A 101 DAPDYYGVIKEPMDLA--TMEERVQRRYYEKLTEFVADMTKIFDN---CRYYNPSDSPFY 155 (174)
T ss_dssp TCHHHHHHCSSCCCHH--HHHHHHHTTCCCBHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred cCCchHHHhCCcCCHH--HHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 4799999999999988 899999999999888876666665544 788996653333
No 72
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=59.23 E-value=0.64 Score=43.68 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=41.7
Q ss_pred CCchhhhhhcccccCCCCCCccccCc--cccccccCCcccccccccCCCCccCCcccceee
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTE--MTASEDSCAPKRKCISLNIDGYDNFGVPLQVLT 97 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~--~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~v~~ 97 (776)
+|+|+.+|..||+.. ++..|++++ .|.+.+.-..+-+.|--| |..||-+.-.|.
T Consensus 49 ~pdY~~iIk~PmDL~--tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N---a~~yN~~~s~i~ 104 (135)
T 2yyn_A 49 VPDYYKIIKNPMDLS--TIKKRLQEDYSMYSKPEDFVADFRLIFQN---CAEFNEPDSEVA 104 (135)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHSSSCCCSSHHHHHHHHHHHHHH---HHHHSCTTSHHH
T ss_pred CCCHHHHcCCCCCHH--HHHHHHhccccCCCCHHHHHHHHHHHHHH---HHHHCCCCCHHH
Confidence 799999999999988 899999984 677777776555555444 889997654333
No 73
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=56.96 E-value=12 Score=39.60 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004051 643 ARLQAEAKAAEEARRKAEA 661 (776)
Q Consensus 643 arl~a~~~aae~a~r~~~~ 661 (776)
-|++++++.+|..+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~ 58 (323)
T 1ij5_A 40 DRLEAQIAQKEQEQKAKLA 58 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3667777776666655443
No 74
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.95 E-value=0.37 Score=45.18 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=42.9
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcccc
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQ 94 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~~ 94 (776)
+|||+.+|..||+.. ++..|++++.|.+.+.-..+-+.|--| |-.||-|.-
T Consensus 37 ~pdY~~iIk~PmDL~--tI~~kl~~~~Y~s~~~f~~D~~Li~~N---a~~yN~~~s 87 (131)
T 2dkw_A 37 VSDYLEVIKEPMDLS--TVITKIDKHNYLTAKDFLKDIDLICSN---ALEYNPDKD 87 (131)
T ss_dssp CSSCTTSCSSCCCHH--HHHHHHHTTCCCSSHHHHHHHHHHHHH---HHHSCCCSS
T ss_pred CccHHhHcCCCcCHH--HHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHCCCCC
Confidence 799999999999988 899999999999888876666665544 888997753
No 75
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=55.37 E-value=0.78 Score=42.27 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=40.5
Q ss_pred CCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCcc
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~ 92 (776)
+|+|+.+|..||+.+ ++..|++++.|.+-+.-..+-+.|--| |-.||-|
T Consensus 40 ~pdY~~~I~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~ 88 (123)
T 3q2e_A 40 YPDYRDIIDTPMDFG--TVRETLDAGNYDSPLEFCKDIRLIFSN---AKAYTPN 88 (123)
T ss_dssp CTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHSCC
T ss_pred cCCHHHHcCCCCCHH--HHHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 799999999999988 899999999999888776665555544 8889854
No 76
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=54.95 E-value=0.89 Score=42.31 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=42.2
Q ss_pred CCCchhhhhhcccccCCCCCCccccCccccccccCCcccccccccCCCCccCCccc
Q 004051 38 FVPDYRHAVETMAESEGFGSSGRVDTEMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (776)
Q Consensus 38 ~~p~y~~~~~~~~~~~~~~~~~rv~~~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~ 93 (776)
-+|||+.+|..||+.+ ++-.|++++.|.+-+.-..+-+.|--| |..||-+.
T Consensus 39 ~~pdY~~iI~~PmdL~--tI~~kl~~~~Y~~~~~f~~D~~li~~N---a~~yN~~~ 89 (130)
T 3dai_A 39 EVPDYVTVIKQPMDLS--SVISKIDLHKYLTVKDYLRDIDLICSN---ALEYNPDR 89 (130)
T ss_dssp TCTTHHHHCSSCCCHH--HHHHHHHTTCCSSHHHHHHHHHHHHHH---HHHHCCSS
T ss_pred hcCCHHHHcCCCCCHH--HHHHHHhCCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 3799999999999988 899999999999888876666665544 88899664
No 77
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=50.18 E-value=26 Score=30.73 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 645 LQAEAKAAEEARRKAEAEAAAEAKRKRELEREA 677 (776)
Q Consensus 645 l~a~~~aae~a~r~~~~~~~~e~~~~re~er~~ 677 (776)
||--+.|||+.|+.+||+--..+..+||.++|-
T Consensus 47 IqkKLeAAeERRks~EA~~L~~Laekreh~~EV 79 (87)
T 4f6r_C 47 IQKKLEAAEERRKAHFAAMLERLQEKDKHAEEV 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567889988888877666667777776653
No 78
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=44.63 E-value=30 Score=40.04 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 623 DPEKLRIEREELERRHREEKARLQAEAKAAEEA 655 (776)
Q Consensus 623 dp~kl~~e~e~le~~q~eekarl~a~~~aae~a 655 (776)
.-+-+++|.+.|+.+|++....+++|-|-=++-
T Consensus 495 ~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~ 527 (592)
T 1f5n_A 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777765554443
No 79
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=44.15 E-value=1.1e+02 Score=28.33 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 632 EELERRHREEKARLQAEAKAAEEARRK 658 (776)
Q Consensus 632 e~le~~q~eekarl~a~~~aae~a~r~ 658 (776)
.+|++..++|.+|+..+-.-||+|+++
T Consensus 16 ae~q~L~~~E~qry~~eka~AE~A~~~ 42 (119)
T 3etw_A 16 AEYQNLANQEEARFNEERAQADAARQA 42 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999998875
No 80
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=41.90 E-value=30 Score=39.07 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.5
Q ss_pred HHHHHH
Q 004051 679 RQALQM 684 (776)
Q Consensus 679 r~~l~~ 684 (776)
|.||+.
T Consensus 355 ~~~~~~ 360 (551)
T 2b5u_A 355 KSELDA 360 (551)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 344444
No 81
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=41.58 E-value=1.3e+02 Score=29.07 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhc
Q 004051 676 EAARQALQMMEKT 688 (776)
Q Consensus 676 ~~ar~~l~~m~~t 688 (776)
+.|+..|..|-++
T Consensus 84 ~~a~~~L~~~~~~ 96 (187)
T 3v6i_A 84 RRVREALEALPQK 96 (187)
T ss_dssp HHHHHHHHHGGGS
T ss_pred HHHHHHHHhhhCC
Confidence 4555555555544
No 82
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=40.02 E-value=73 Score=25.91 Aligned_cols=15 Identities=53% Similarity=0.665 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004051 669 RKRELEREAARQALQ 683 (776)
Q Consensus 669 ~~re~er~~ar~~l~ 683 (776)
++.|.|||.-||.+.
T Consensus 33 ~kME~ERE~mRQ~IR 47 (63)
T 3rk3_E 33 AKMEAEREAVRQGIR 47 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567888888888765
No 83
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.44 E-value=25 Score=40.50 Aligned_cols=11 Identities=45% Similarity=0.507 Sum_probs=7.0
Q ss_pred HhhccchhhHH
Q 004051 599 LLRNRFADTIL 609 (776)
Q Consensus 599 ~lk~rfadtil 609 (776)
.++.|=-|||=
T Consensus 291 f~~~r~~d~~e 301 (575)
T 2i1j_A 291 YMRRRKPDTID 301 (575)
T ss_dssp HHHHTSCCCHH
T ss_pred HHHccCCCcHH
Confidence 34667777773
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=38.72 E-value=2.2 Score=41.73 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCchhhhhhcccccCCCCCCccccC--ccccccccCCcccccccccCCCCccCCccc
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDT--EMTASEDSCAPKRKCISLNIDGYDNFGVPL 93 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~--~~~~s~ds~~~~rk~i~~n~~~~~~f~v~~ 93 (776)
+|+|+.+|..||+.. ++..|+++ ..|.+.+.-..+-+.|--| +-.||-+.
T Consensus 110 ~pdY~~iIk~PmdL~--tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N---a~~yN~~~ 161 (184)
T 3o36_A 110 VPDYYKIIKNPMDLS--TIKKRLQEDYSMYSKPEDFVADFRLIFQN---CAEFNEPD 161 (184)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHHSTTCSCCSHHHHHHHHHHHHHH---HHHHSCTT
T ss_pred CCchhhhcCCCCCHH--HHHHHHHhcCCCCCCHHHHHHHHHHHHHH---HHHHCCCC
Confidence 699999999999988 89999988 4677777766555555544 77788554
No 85
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.48 E-value=1.2e+02 Score=27.19 Aligned_cols=25 Identities=48% Similarity=0.610 Sum_probs=12.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH
Q 004051 626 KLRIEREELER---RHREEKARLQAEAK 650 (776)
Q Consensus 626 kl~~e~e~le~---~q~eekarl~a~~~ 650 (776)
+|+.+.+.|++ +.+++++.|++++-
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 24556666666553
No 86
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=33.83 E-value=8.7 Score=41.23 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=0.0
Q ss_pred hhhccccccC
Q 004051 741 EQLGLYMKMD 750 (776)
Q Consensus 741 e~lgl~~k~d 750 (776)
.+.-..||.|
T Consensus 296 ~kF~VL~Kk~ 305 (319)
T 1lsh_B 296 PPFIVLIKLD 305 (319)
T ss_dssp ----------
T ss_pred ceEEEEEeeC
Confidence 3444444443
No 87
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=32.67 E-value=55 Score=25.51 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004051 668 KRKRELEREAARQALQ 683 (776)
Q Consensus 668 ~~~re~er~~ar~~l~ 683 (776)
-++.|.|||.-||.+.
T Consensus 29 h~kmE~eRE~mRq~IR 44 (49)
T 1kil_E 29 YAKMEAEREVMRQGIR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567888888888764
No 88
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=31.73 E-value=32 Score=39.59 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhc
Q 004051 673 LEREAARQALQMMEKT 688 (776)
Q Consensus 673 ~er~~ar~~l~~m~~t 688 (776)
.+|..|.++.+.|+.+
T Consensus 384 ~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 384 QRQNELQAMMQRLEET 399 (575)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444555555544
No 89
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=31.69 E-value=62 Score=33.23 Aligned_cols=36 Identities=42% Similarity=0.485 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 647 AEAKAAEEARRKAEAEAAAEAKRKRELEREAARQAL 682 (776)
Q Consensus 647 a~~~aae~a~r~~~~~~~~e~~~~re~er~~ar~~l 682 (776)
.-.+|||+.|+-.||+--.-+..+||.+++..+.++
T Consensus 49 kKLeAAEERRks~Ea~~lk~laekrEhe~evlqKa~ 84 (240)
T 4f61_I 49 KKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAI 84 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555444444445555555544443
No 90
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=30.65 E-value=2.3e+02 Score=34.13 Aligned_cols=7 Identities=57% Similarity=0.866 Sum_probs=0.0
Q ss_pred hhhhhcc
Q 004051 739 PLEQLGL 745 (776)
Q Consensus 739 ~le~lgl 745 (776)
+|+-|||
T Consensus 821 ll~~Lgl 827 (861)
T 2zuo_A 821 LLQSLGL 827 (861)
T ss_dssp -------
T ss_pred HHHhCCC
Confidence 3444443
No 91
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=26.86 E-value=36 Score=28.00 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhh
Q 004051 672 ELEREAARQALQMME 686 (776)
Q Consensus 672 e~er~~ar~~l~~m~ 686 (776)
+.|..||+.||+.|+
T Consensus 58 ~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 58 AAEQSAAEVALRELA 72 (73)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444444444443
No 92
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=24.49 E-value=16 Score=39.21 Aligned_cols=9 Identities=0% Similarity=-0.178 Sum_probs=0.0
Q ss_pred hhhhhcccc
Q 004051 739 PLEQLGLYM 747 (776)
Q Consensus 739 ~le~lgl~~ 747 (776)
.++++--++
T Consensus 245 ~~~~~~~~~ 253 (319)
T 1lsh_B 245 IASAFSGIV 253 (319)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 344443333
No 93
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=24.27 E-value=62 Score=30.96 Aligned_cols=26 Identities=35% Similarity=0.265 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 625 EKLRIEREELERRHREEKARLQAEAK 650 (776)
Q Consensus 625 ~kl~~e~e~le~~q~eekarl~a~~~ 650 (776)
.||+.|.+.|....|.+-+.--++|+
T Consensus 12 ~~L~~EL~~L~~~~R~~i~~~i~~Ar 37 (158)
T 2p4v_A 12 EKLKQELNYLWREERPEVTKKVTWAA 37 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 56676766665554444443334443
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.56 E-value=3.6 Score=41.12 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCchhhhhhcccccCCCCCCccccC---ccccccccCCcccccccccCCCCccCCcc
Q 004051 39 VPDYRHAVETMAESEGFGSSGRVDT---EMTASEDSCAPKRKCISLNIDGYDNFGVP 92 (776)
Q Consensus 39 ~p~y~~~~~~~~~~~~~~~~~rv~~---~~~~s~ds~~~~rk~i~~n~~~~~~f~v~ 92 (776)
+|+|+.+|..||+.. ++..|+++ ..|.+.+.-..+-+.|--| +-.||-+
T Consensus 110 ~pdY~~iIk~PmdL~--tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N---a~~yN~~ 161 (207)
T 3u5n_A 110 IPNYYKIIKKPMDLS--TVKKKLQKKHSQHYQIPDDFVADVRLIFKN---CERFNEM 161 (207)
T ss_dssp STTHHHHCSSCCCHH--HHHHHHSTTSTTCCSSHHHHHHHHHHHHHH---HHHHHHH
T ss_pred hccHhHHhCCccCHH--HHHHHHhcccCCCcCCHHHHHHHHHHHHHH---HHHHCCC
Confidence 799999999999988 89999997 6787777766555555444 7778853
No 95
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=22.67 E-value=1.3e+02 Score=31.55 Aligned_cols=44 Identities=30% Similarity=0.355 Sum_probs=29.9
Q ss_pred cCCCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004051 618 KGEKRDPEK--LRIEREELERRHREEKARLQAEAKAAEEARRKAEA 661 (776)
Q Consensus 618 ~~~k~dp~k--l~~e~e~le~~q~eekarl~a~~~aae~a~r~~~~ 661 (776)
|.+.++.-. +.++.+|.++++.|.-.|++-++.|-+.|+|.+.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (323)
T 1ij5_A 35 HKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERAEREREA 80 (323)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhHHHHHHHHh
Confidence 444444444 56778888888888888888888888888777665
No 96
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=22.05 E-value=52 Score=26.84 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 004051 670 KRELEREAARQALQMMEK 687 (776)
Q Consensus 670 ~re~er~~ar~~l~~m~~ 687 (776)
|++.|..||+.||+.+..
T Consensus 51 KK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 51 KKLAKARAAQSALATVFN 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455667777888777654
No 97
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=21.30 E-value=56 Score=26.48 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 004051 671 RELEREAARQALQMME 686 (776)
Q Consensus 671 re~er~~ar~~l~~m~ 686 (776)
++.|..||+.||+.+.
T Consensus 53 K~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 53 QVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444555555555543
No 98
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=21.19 E-value=55 Score=27.17 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004051 670 KRELEREAARQALQMME 686 (776)
Q Consensus 670 ~re~er~~ar~~l~~m~ 686 (776)
|++.|..||+.||+.|.
T Consensus 57 KK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 57 KKDAEISAGRTALLAIQ 73 (76)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444555555555554
No 99
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.90 E-value=3.6e+02 Score=24.00 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 004051 624 PEKLRIEREELERRHR---EEKARLQAEAKAAEEARR 657 (776)
Q Consensus 624 p~kl~~e~e~le~~q~---eekarl~a~~~aae~a~r 657 (776)
-++||.+..+|+.+.. .|.++|+++.......|.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~ 43 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3556666666665533 344455554444444333
Done!