Query 004052
Match_columns 776
No_of_seqs 486 out of 2732
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 16:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00653 GlnA glutamine synth 100.0 5E-90 1.1E-94 774.8 38.1 356 403-773 7-386 (460)
2 COG0174 GlnA Glutamine synthet 100.0 1.5E-89 3.2E-94 756.5 36.3 357 399-773 6-372 (443)
3 PRK09469 glnA glutamine synthe 100.0 4E-88 8.6E-93 760.2 38.4 355 403-774 10-395 (469)
4 TIGR03105 gln_synth_III glutam 100.0 2.1E-87 4.5E-92 749.6 37.9 348 403-773 5-365 (435)
5 PLN02284 glutamine synthetase 100.0 2.5E-73 5.4E-78 620.4 30.7 321 408-761 21-353 (354)
6 PF00120 Gln-synt_C: Glutamine 100.0 1.3E-70 2.9E-75 579.3 17.9 251 503-759 1-259 (259)
7 PLN03036 glutamine synthetase; 100.0 8.3E-69 1.8E-73 591.1 31.7 322 409-761 79-413 (432)
8 PRK02925 glucuronate isomerase 100.0 1.6E-51 3.5E-56 448.7 29.0 361 5-381 18-466 (466)
9 COG1904 UxaC Glucuronate isome 100.0 1.7E-48 3.8E-53 411.9 25.6 359 5-379 17-462 (463)
10 PF02614 UxaC: Glucuronate iso 100.0 1.2E-45 2.7E-50 410.5 18.4 359 4-378 16-462 (462)
11 KOG0683 Glutamine synthetase [ 100.0 1.9E-37 4E-42 322.1 14.6 332 401-762 22-369 (380)
12 COG2159 Predicted metal-depend 99.9 6.4E-25 1.4E-29 234.8 19.8 196 153-382 87-292 (293)
13 COG3968 Uncharacterized protei 99.8 1.1E-18 2.3E-23 184.8 18.0 231 523-767 214-508 (724)
14 PF04909 Amidohydro_2: Amidohy 99.8 2.2E-19 4.8E-24 190.1 8.9 204 151-380 57-273 (273)
15 cd01311 PDC_hydrolase 2-pyrone 99.5 8.2E-13 1.8E-17 140.2 15.3 140 212-377 108-263 (263)
16 PF03951 Gln-synt_N: Glutamine 99.4 7.3E-13 1.6E-17 115.1 6.8 80 407-497 1-84 (84)
17 COG3618 Predicted metal-depend 99.2 8.7E-10 1.9E-14 114.5 18.2 146 210-380 120-278 (279)
18 cd01310 TatD_DNAse TatD like p 99.0 1.8E-09 3.8E-14 113.3 11.9 147 210-379 104-251 (251)
19 KOG4245 Predicted metal-depend 98.9 3.2E-09 6.8E-14 103.0 8.8 199 154-383 55-290 (297)
20 TIGR00010 hydrolase, TatD fami 98.7 2.9E-07 6.2E-12 96.7 15.9 143 212-380 106-252 (252)
21 TIGR02050 gshA_cyan_rel unchar 98.4 1.1E-05 2.4E-10 86.7 16.9 199 526-771 1-261 (287)
22 PRK13517 carboxylate-amine lig 98.2 2.5E-05 5.3E-10 87.2 16.7 132 524-694 10-168 (373)
23 PRK13515 carboxylate-amine lig 98.1 7.4E-05 1.6E-09 83.4 15.7 190 524-765 5-259 (371)
24 PRK11449 putative deoxyribonuc 98.0 0.00015 3.2E-09 76.9 15.4 140 214-380 114-258 (258)
25 PRK13516 gamma-glutamyl:cystei 98.0 6.8E-05 1.5E-09 83.3 12.6 131 524-693 11-168 (373)
26 PRK10812 putative DNAse; Provi 97.9 8.6E-05 1.9E-09 78.9 12.2 143 214-381 111-257 (265)
27 cd00530 PTE Phosphotriesterase 97.8 0.00029 6.3E-09 75.9 15.0 147 215-378 137-293 (293)
28 COG0084 TatD Mg-dependent DNas 97.8 0.00023 4.9E-09 74.8 13.4 142 212-380 110-256 (256)
29 PRK13518 carboxylate-amine lig 97.6 0.001 2.2E-08 73.3 14.7 130 525-693 13-169 (357)
30 PF01026 TatD_DNase: TatD rela 97.6 0.00034 7.3E-09 74.0 10.5 143 210-379 107-255 (255)
31 COG0418 PyrC Dihydroorotase [N 97.4 0.0025 5.4E-08 66.9 13.5 152 215-382 119-305 (344)
32 PRK09875 putative hydrolase; P 97.2 0.012 2.6E-07 63.4 16.7 149 217-379 142-292 (292)
33 PRK10425 DNase TatD; Provision 97.2 0.0034 7.4E-08 66.5 12.3 142 214-380 108-258 (258)
34 COG1099 Predicted metal-depend 97.1 0.035 7.6E-07 56.1 17.5 143 212-381 112-254 (254)
35 cd01294 DHOase Dihydroorotase 97.0 0.008 1.7E-07 66.2 13.2 157 213-381 112-298 (335)
36 PLN02611 glutamate--cysteine l 96.9 0.0047 1E-07 70.4 10.5 92 585-694 124-247 (482)
37 COG2170 Uncharacterized conser 96.7 0.0093 2E-07 64.0 9.9 155 587-765 43-257 (369)
38 TIGR02048 gshA_cyano glutamate 96.5 0.013 2.9E-07 65.3 10.0 94 584-694 31-151 (376)
39 PRK05451 dihydroorotase; Provi 96.3 0.071 1.5E-06 59.0 14.6 79 212-295 116-199 (345)
40 PF02126 PTE: Phosphotriestera 96.2 0.033 7.3E-07 60.4 11.0 152 216-379 144-308 (308)
41 KOG3020 TatD-related DNase [Re 96.1 0.14 3E-06 54.7 14.5 94 215-328 136-231 (296)
42 PLN02599 dihydroorotase 96.1 0.095 2.1E-06 58.3 14.0 157 213-381 135-323 (364)
43 cd01292 metallo-dependent_hydr 95.7 0.06 1.3E-06 56.1 10.1 105 212-328 131-237 (275)
44 PF04107 GCS2: Glutamate-cyste 95.7 0.019 4.2E-07 61.8 6.4 96 582-693 34-159 (288)
45 COG2355 Zn-dependent dipeptida 95.0 0.39 8.5E-06 51.8 13.3 137 218-379 153-308 (313)
46 TIGR01436 glu_cys_lig_pln glut 94.9 0.33 7.2E-06 55.3 13.3 43 585-628 81-124 (446)
47 KOG2902 Dihydroorotase [Nucleo 94.8 0.12 2.6E-06 52.7 8.2 116 215-332 118-252 (344)
48 COG1831 Predicted metal-depend 94.0 0.47 1E-05 49.5 10.7 136 215-382 146-284 (285)
49 cd01297 D-aminoacylase D-amino 93.4 1.4 3.1E-05 49.9 14.6 150 210-381 195-355 (415)
50 PF01244 Peptidase_M19: Membra 93.0 0.52 1.1E-05 51.6 10.0 70 300-379 247-319 (320)
51 cd01302 Cyclic_amidohydrolases 92.4 2.5 5.3E-05 46.7 14.4 146 212-381 113-287 (337)
52 cd01301 rDP_like renal dipepti 92.3 2.2 4.8E-05 46.4 13.5 69 300-377 239-309 (309)
53 TIGR00856 pyrC_dimer dihydroor 91.2 0.48 1E-05 52.4 7.1 79 212-294 113-195 (341)
54 COG1735 Php Predicted metal-de 90.8 4.9 0.00011 43.0 13.6 155 210-381 148-315 (316)
55 cd01314 D-HYD D-hydantoinases 90.4 5.5 0.00012 45.6 15.1 161 212-382 160-377 (447)
56 TIGR01975 isoAsp_dipep isoaspa 87.3 6.9 0.00015 44.1 12.6 139 227-381 188-344 (389)
57 PLN02942 dihydropyrimidinase 86.0 19 0.00041 41.8 15.8 164 213-382 166-383 (486)
58 cd01307 Met_dep_hydrolase_B Me 85.3 13 0.00028 40.9 13.4 135 217-381 152-297 (338)
59 PRK09357 pyrC dihydroorotase; 85.0 8.2 0.00018 43.8 12.0 162 214-382 159-365 (423)
60 cd01309 Met_dep_hydrolase_C Me 84.5 13 0.00029 41.2 13.2 141 212-383 178-322 (359)
61 cd01299 Met_dep_hydrolase_A Me 83.1 64 0.0014 35.2 17.7 25 211-235 157-181 (342)
62 PLN02795 allantoinase 82.3 23 0.00049 41.5 14.3 163 212-381 210-428 (505)
63 PRK07369 dihydroorotase; Provi 81.3 24 0.00053 40.1 13.8 161 215-381 163-367 (418)
64 cd01315 L-HYD_ALN L-Hydantoina 80.5 28 0.00061 39.8 14.2 163 212-381 160-373 (447)
65 TIGR00857 pyrC_multi dihydroor 79.4 23 0.00049 40.2 12.8 162 212-381 145-351 (411)
66 TIGR02967 guan_deamin guanine 76.6 49 0.0011 37.2 14.4 110 213-328 185-299 (401)
67 TIGR03444 gshA_related glutama 73.3 14 0.0003 41.4 8.5 38 590-627 68-106 (390)
68 cd01317 DHOase_IIa Dihydroorot 72.3 49 0.0011 36.9 12.9 34 344-381 292-325 (374)
69 cd04869 ACT_GcvR_2 ACT domains 70.1 13 0.00027 31.4 5.9 65 566-632 11-81 (81)
70 PRK09061 D-glutamate deacylase 68.9 1.3E+02 0.0028 35.3 15.8 34 342-379 400-434 (509)
71 PRK08044 allantoinase; Provisi 67.8 51 0.0011 37.9 12.0 34 344-381 342-375 (449)
72 PRK09228 guanine deaminase; Pr 67.5 99 0.0022 35.3 14.3 109 213-327 210-323 (433)
73 cd01303 GDEase Guanine deamina 66.4 1.2E+02 0.0025 34.6 14.6 107 213-327 207-320 (429)
74 PRK07583 cytosine deaminase-li 66.0 88 0.0019 35.7 13.5 56 212-271 210-265 (438)
75 PRK08323 phenylhydantoinase; V 65.6 95 0.0021 35.5 13.8 32 346-381 345-376 (459)
76 PRK09059 dihydroorotase; Valid 64.8 80 0.0017 36.1 12.8 162 212-381 164-370 (429)
77 KOG0683 Glutamine synthetase [ 64.8 2.1 4.5E-05 46.6 -0.1 97 663-773 257-354 (380)
78 cd01295 AdeC Adenine deaminase 64.7 1.1E+02 0.0024 34.8 13.9 130 215-380 122-254 (422)
79 TIGR02033 D-hydantoinase D-hyd 64.2 1.5E+02 0.0032 33.8 15.0 35 344-382 345-379 (454)
80 PRK07213 chlorohydrolase; Prov 63.8 1.8E+02 0.0039 32.4 15.2 147 211-381 176-326 (375)
81 TIGR03178 allantoinase allanto 62.5 89 0.0019 35.7 12.7 33 344-380 337-369 (443)
82 PF06877 RraB: Regulator of ri 62.0 47 0.001 29.7 8.2 95 506-627 2-98 (104)
83 PRK08417 dihydroorotase; Provi 61.9 1E+02 0.0022 34.7 12.7 167 211-381 127-335 (386)
84 PRK10657 isoaspartyl dipeptida 60.2 1.3E+02 0.0029 33.4 13.4 140 229-382 192-344 (388)
85 PF04273 DUF442: Putative phos 60.0 12 0.00025 34.3 3.9 67 167-237 26-96 (110)
86 PF13740 ACT_6: ACT domain; PD 59.4 23 0.00051 29.7 5.5 62 566-630 14-75 (76)
87 PRK06189 allantoinase; Provisi 59.2 1.1E+02 0.0024 35.1 12.7 116 259-381 229-373 (451)
88 KOG4127 Renal dipeptidase [Pos 58.1 53 0.0011 36.1 8.9 136 220-380 238-390 (419)
89 PRK08204 hypothetical protein; 57.0 1.5E+02 0.0032 33.8 13.4 103 214-327 201-303 (449)
90 TIGR03121 one_C_dehyd_A formyl 56.5 82 0.0018 37.2 10.9 59 318-381 376-450 (556)
91 cd01300 YtcJ_like YtcJ_like me 55.4 64 0.0014 37.2 10.0 68 211-282 292-359 (479)
92 cd04872 ACT_1ZPV ACT domain pr 54.6 27 0.00058 30.2 5.2 67 566-633 13-79 (88)
93 PRK02382 dihydroorotase; Provi 54.6 1.3E+02 0.0029 34.3 12.4 28 350-381 334-361 (443)
94 PRK02471 bifunctional glutamat 54.5 33 0.00071 42.2 7.6 38 584-621 53-91 (752)
95 PRK00194 hypothetical protein; 54.4 29 0.00062 30.1 5.4 66 566-632 15-80 (90)
96 PRK06151 N-ethylammeline chlor 52.4 1.2E+02 0.0026 35.3 11.6 110 211-326 218-338 (488)
97 cd01316 CAD_DHOase The eukaryo 51.8 2.3E+02 0.005 31.3 13.2 112 260-381 146-281 (344)
98 PRK08418 chlorohydrolase; Prov 51.5 2E+02 0.0043 32.5 13.0 104 213-327 189-313 (408)
99 PRK08203 hydroxydechloroatrazi 51.4 82 0.0018 36.1 10.0 107 213-327 213-323 (451)
100 cd04870 ACT_PSP_1 CT domains f 51.3 42 0.00091 28.0 5.7 65 566-632 11-75 (75)
101 cd01308 Isoaspartyl-dipeptidas 48.1 2.9E+02 0.0062 30.8 13.6 72 305-381 263-342 (387)
102 PRK13404 dihydropyrimidinase; 47.9 3E+02 0.0064 31.9 13.9 34 344-381 352-385 (477)
103 PRK09045 N-ethylammeline chlor 47.8 1.5E+02 0.0032 33.9 11.4 107 213-327 201-311 (443)
104 PRK15493 5-methylthioadenosine 46.4 1.4E+02 0.0031 34.0 10.9 154 212-381 195-355 (435)
105 cd00443 ADA_AMPD Adenosine/AMP 46.1 4.2E+02 0.009 28.6 14.9 94 215-330 154-258 (305)
106 PRK12394 putative metallo-depe 45.7 4.3E+02 0.0092 29.4 14.4 140 213-381 172-321 (379)
107 COG3453 Uncharacterized protei 45.1 48 0.001 30.8 5.2 70 167-237 27-97 (130)
108 KOG0558 Dihydrolipoamide trans 43.7 19 0.00042 39.0 2.9 54 564-633 248-302 (474)
109 cd01298 ATZ_TRZ_like TRZ/ATZ f 43.6 2.3E+02 0.0049 31.6 11.9 109 212-328 192-304 (411)
110 PRK09230 cytosine deaminase; P 43.2 2E+02 0.0043 32.8 11.4 107 213-328 194-316 (426)
111 PRK08393 N-ethylammeline chlor 42.8 1.9E+02 0.0042 32.7 11.2 108 212-327 187-298 (424)
112 cd01305 archeal_chlorohydrolas 42.2 1.7E+02 0.0038 30.6 10.1 98 216-328 127-224 (263)
113 PF03102 NeuB: NeuB family; I 42.1 35 0.00076 35.8 4.6 75 205-294 94-179 (241)
114 PRK06687 chlorohydrolase; Vali 40.9 1.9E+02 0.0041 32.7 10.7 107 212-326 194-304 (419)
115 PRK09237 dihydroorotase; Provi 39.1 5.8E+02 0.012 28.3 14.4 129 222-381 176-316 (380)
116 PTZ00372 endonuclease 4-like p 38.9 5.2E+02 0.011 29.5 13.4 112 215-328 219-351 (413)
117 cd01318 DHOase_IIb Dihydroorot 38.7 2.5E+02 0.0054 31.3 11.0 114 259-381 168-307 (361)
118 COG3964 Predicted amidohydrola 37.2 4.8E+02 0.01 28.5 11.8 170 219-426 177-357 (386)
119 cd01306 PhnM PhnM is believed 37.1 6E+02 0.013 27.9 15.2 44 186-236 142-185 (325)
120 PRK06886 hypothetical protein; 36.9 4.9E+02 0.011 28.7 12.7 51 213-271 161-215 (329)
121 cd01312 Met_dep_hydrolase_D Me 36.7 2.6E+02 0.0056 31.3 10.9 107 214-328 163-291 (381)
122 PRK06361 hypothetical protein; 35.4 2.2E+02 0.0047 28.8 9.2 95 265-379 115-209 (212)
123 cd01304 FMDH_A Formylmethanofu 34.6 5.5E+02 0.012 30.3 13.1 18 364-381 430-447 (541)
124 TIGR03583 EF_0837 probable ami 34.3 5.1E+02 0.011 28.5 12.7 22 356-381 292-313 (365)
125 TIGR01244 conserved hypothetic 33.1 91 0.002 29.4 5.5 16 167-182 26-41 (135)
126 cd04893 ACT_GcvR_1 ACT domains 32.7 1.4E+02 0.003 25.1 6.0 63 566-631 13-75 (77)
127 PTZ00124 adenosine deaminase; 31.2 97 0.0021 34.6 6.1 84 147-236 139-228 (362)
128 smart00874 B5 tRNA synthetase 31.0 82 0.0018 25.9 4.3 50 569-626 22-71 (71)
129 PRK06380 metal-dependent hydro 30.7 6.6E+02 0.014 28.2 13.0 107 213-327 185-296 (418)
130 PRK07228 N-ethylammeline chlor 30.6 7.6E+02 0.016 28.0 13.6 107 213-327 198-308 (445)
131 PRK06038 N-ethylammeline chlor 30.3 3.5E+02 0.0075 30.8 10.7 108 212-327 188-299 (430)
132 PRK06846 putative deaminase; V 28.9 6E+02 0.013 28.6 12.3 78 191-272 178-260 (410)
133 COG3364 Zn-ribbon containing p 28.7 36 0.00077 30.4 1.7 27 573-600 52-78 (112)
134 TIGR03569 NeuB_NnaB N-acetylne 28.5 36 0.00077 37.5 2.1 65 217-291 123-198 (329)
135 TIGR03586 PseI pseudaminic aci 28.3 47 0.001 36.5 3.0 53 217-277 124-178 (327)
136 cd01296 Imidazolone-5PH Imidaz 28.2 6.4E+02 0.014 27.6 12.2 24 213-236 192-215 (371)
137 TIGR01224 hutI imidazoloneprop 28.2 6.2E+02 0.013 27.9 12.1 22 215-236 198-219 (377)
138 PRK07203 putative chlorohydrol 27.8 1.1E+02 0.0023 35.1 5.9 107 213-327 204-314 (442)
139 PRK12393 amidohydrolase; Provi 27.7 7E+02 0.015 28.6 12.7 108 212-327 216-327 (457)
140 PRK07572 cytosine deaminase; V 26.6 3.7E+02 0.0081 30.5 10.1 24 214-237 191-214 (426)
141 PRK14085 imidazolonepropionase 26.3 8.4E+02 0.018 27.0 12.8 140 211-381 204-344 (382)
142 COG0402 SsnA Cytosine deaminas 25.1 1E+03 0.022 26.8 15.9 125 189-329 169-309 (421)
143 cd04882 ACT_Bt0572_2 C-termina 25.1 1.7E+02 0.0037 22.9 5.1 51 567-628 12-64 (65)
144 PRK11191 RNase E inhibitor pro 25.0 5.5E+02 0.012 24.5 9.1 94 507-627 11-107 (138)
145 PRK07627 dihydroorotase; Provi 24.5 6.5E+02 0.014 28.7 11.5 83 212-294 159-259 (425)
146 cd01313 Met_dep_hydrolase_E Me 24.3 7.2E+02 0.016 28.1 11.8 106 212-326 205-314 (418)
147 PRK05985 cytosine deaminase; P 23.9 1E+03 0.022 26.4 15.6 25 213-237 190-214 (391)
148 PRK11589 gcvR glycine cleavage 23.3 1.9E+02 0.004 29.3 6.0 65 565-635 106-180 (190)
149 COG3572 GshA Gamma-glutamylcys 23.2 1.2E+02 0.0026 33.8 4.8 43 587-630 93-136 (456)
150 TIGR02778 ligD_pol DNA polymer 22.9 1.2E+02 0.0027 31.8 4.7 56 590-651 113-168 (245)
151 PRK09356 imidazolonepropionase 22.3 9.8E+02 0.021 26.6 12.4 24 213-236 221-244 (406)
152 cd04875 ACT_F4HF-DF N-terminal 22.3 2.4E+02 0.0053 23.1 5.7 60 566-627 11-73 (74)
No 1
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=5e-90 Score=774.81 Aligned_cols=356 Identities=30% Similarity=0.473 Sum_probs=318.9
Q ss_pred hccCCceEEEEEEecCCCCcceEEecchhhhHHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEeecCCceecc
Q 004052 403 AFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIP 482 (776)
Q Consensus 403 ~~~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~P 482 (776)
+++++|+||+++|+|++|++|+|.||+++|.+...+.|++|+.+++. +. ...+.+|++|+||++|++++|
T Consensus 7 l~~~~i~~v~~~~~Dl~G~~rgk~vp~~~~~~~~~~~G~~~~~~~~~------~~----~~~~~~D~~l~PD~~Tl~~~p 76 (460)
T TIGR00653 7 IKEENVKFVDLRFTDIKGKPQHVEIPASALDKEAFEEGIMFDGSSIR------GF----QGIEESDMLLKPDPSTAVIDP 76 (460)
T ss_pred HHhCCCcEEEEEEECCCCCEeeEEEeHHHhhHHHhcCCeeccccccc------cc----ccCCCCcEEEeccCCcceecc
Confidence 34588999999999999999999999999986434689988876541 10 113467999999999999999
Q ss_pred CCC-CceEEEEEccCC-CCCcCCCChHHHHHHHHHHHHHhcCceeEEeeeeEEEEEeecccC------------------
Q 004052 483 WQK-QEEMIMADMHLK-PGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLRE------------------ 542 (776)
Q Consensus 483 ~~~-~~a~v~~d~~~~-~g~p~~~~pR~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~------------------ 542 (776)
|.+ ++++|+||+++. ||+|++.|||++|||+++++++++|+++++|+|+|||||+.+...
T Consensus 77 w~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (460)
T TIGR00653 77 WRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWN 156 (460)
T ss_pred CCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeecccccccc
Confidence 965 589999999998 999999999999999999998668999999999999999863211
Q ss_pred ---CCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHH
Q 004052 543 ---GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRA 619 (776)
Q Consensus 543 ---~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~ 619 (776)
+..++.|.+.+.||+....+...+|+++|++.|+++||+|+++|+|+|||||||++.|+++|+|||+++++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~ 236 (460)
T TIGR00653 157 EESGNRGYKPRDKGGYFPVAPTDTAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKN 236 (460)
T ss_pred ccCCcCCCcccCCccccCCCCcccHHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 11234566666677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeEecccccCCCCCccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCCCcccC
Q 004052 620 VARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDR 699 (776)
Q Consensus 620 vA~~~G~~aTFmpKP~~~~~GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~nSY~R 699 (776)
||++||+.|||||||+.+.+|||+|+|+|||++|+|+|. |++++.+||+++++||||||+|++++++|++||+|||||
T Consensus 237 vA~~~G~~ATFmpKP~~~~~GSG~H~H~Sl~d~g~n~F~--d~~~~~~lS~~~~~fiaGiL~h~~~l~a~~~PtvNSYkR 314 (460)
T TIGR00653 237 VARKHGKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFA--GEEGYAGLSETALYYIGGILKHAKALAAFTNPTVNSYKR 314 (460)
T ss_pred HHHHhCCEEEEecccCCCCCcCceeEEECccCCCeeccC--CCCCCcccCHHHHHHHHHHHHHHHHhhhHhcCCCcchhh
Confidence 999999999999999999999999999999999999998 555667899999999999999999999999999999999
Q ss_pred CCCCCcCCcccccccCCCCCcccccCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHHHHHHhhhhc-CCCCCCcC
Q 004052 700 IQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIG 773 (776)
Q Consensus 700 l~~~~~ap~~~~WG~~NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAGl~Gi~~-l~~p~p~~ 773 (776)
|+|++|||++++||.+||+++||||... +.+.+|||+|++|++|||||++||+|+||++||++ ++||+|++
T Consensus 315 l~p~~~ap~~~~WG~~NR~a~iRvp~~~---~~~~~riE~R~~da~aNPYLalAa~laAGl~Gi~~~l~p~~~~~ 386 (460)
T TIGR00653 315 LVPGYEAPVYLAYSARNRSALIRIPASG---NPKAKRIEFRFPDPSANPYLAFAAMLMAGLDGIKNKIDPGEPVD 386 (460)
T ss_pred cCCCCcCcceeecccCCCCceEEecCCC---CCcCceEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 9999999999999999999999998632 13357999999999999999999999999999999 99999874
No 2
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-89 Score=756.53 Aligned_cols=357 Identities=33% Similarity=0.552 Sum_probs=319.8
Q ss_pred hhhhhccCCceEEEEEEecCCCCcceEEecchh----hhHHHhhccccccccccc-cccccCCCCCCCCCCCCCcEEEEe
Q 004052 399 KKSDAFESDVSLIRVIWVDASGQHRCRVVPVKR----FNDIVTKYGVGLTFACMG-MTSAVDGPADGTNLSGTGEIRLMP 473 (776)
Q Consensus 399 ~~~~~~~~~i~~v~~~~~D~~G~~r~k~vp~~~----~~~~~~~~g~~~~~~~~~-~~~~~d~~~~~~~~~~~~d~~l~P 473 (776)
+..++++++|++|+++|+|+.|++|+|++|+++ +.+. .+.|+.|++++.. +.. -+.+|++|+|
T Consensus 6 ~~~~~~~~~V~~v~~~f~D~~G~~r~k~ip~~~~~~~~~~~-~~~g~~fdgss~~g~~~-----------i~~sDm~l~P 73 (443)
T COG0174 6 VLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQL-FEGGVVFDGSSIAGFEG-----------IGESDMVLKP 73 (443)
T ss_pred HHHHHHhCCceEEEEEEECCCCCeeeEEEecccchhHHHhh-hccCcCcCCccccccCC-----------CCCCCEEEee
Confidence 457789999999999999999999999999993 4333 3567777765532 211 1457999999
Q ss_pred ecCCceeccCCCC-ceEEEEEccCCCCCcCCCChHHHHHHHHHHHHHhcCce-eEEeeeeEEEEEeecccCCCCCccccC
Q 004052 474 DLSTRWRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLV-LNAGFEIEFYLLKSVLREGKEEWVPID 551 (776)
Q Consensus 474 D~~T~~~~P~~~~-~a~v~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~p~~ 551 (776)
|++|+.++||.++ +++|+||+++++|+|++.|||++|||+++++++ .|+. +.+|+|+|||||+.... +.....|.+
T Consensus 74 d~~T~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~-~G~~~~~~g~E~EFfLfd~~~~-~~~~~~~~~ 151 (443)
T COG0174 74 DLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKD-EGLAPAVVGPELEFFLFDRDGR-DPDGGRPAD 151 (443)
T ss_pred ccCceeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHHh-cCCccceeecceeEEEeecccC-CcccCccCC
Confidence 9999999999987 899999999999999999999999999999984 7997 59999999999997321 111156778
Q ss_pred CCCcccCCccccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEec
Q 004052 552 FTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (776)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFm 631 (776)
+++||+..+++...+++++|+..|+++||+||++|||+|||||||++++.+++++||+++++|++||+||++||+.||||
T Consensus 152 ~~~yf~~~~~~~~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFM 231 (443)
T COG0174 152 KGGYFDVAPLDEAEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFM 231 (443)
T ss_pred CCcccCccccccHHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccceeeecccc-CCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCCCcccCC-CCCCcCCcc
Q 004052 632 PKFALDDIGSGSHVHLSLWQ-NGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRI-QPNTWSGAY 709 (776)
Q Consensus 632 pKP~~~~~GsG~HvH~Sl~~-~g~n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~nSY~Rl-~~~~~ap~~ 709 (776)
|||+.+.+|||||+|+|||+ +|+|+|+ |+++..+||++++|||||||+|+++++||++||+|||||| +|..|||++
T Consensus 232 pKP~~g~~GSGMH~H~Sl~~~dg~nlF~--d~~~~~~lS~~~~~~igGilkha~~~~ai~~PtvNSYkRl~vp~e~AP~~ 309 (443)
T COG0174 232 PKPFFGDNGSGMHVHQSLWDKDGGNLFA--DEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYKRLGVPYEWAPTY 309 (443)
T ss_pred CCCCCCCCCCceeEEEEEecCCCCcccc--CCCCcccHHHHHHHHHHHHHHHHHHHHhHhCCCcchhhhcCCCcccCcch
Confidence 99999999999999999995 5569999 6667889999999999999999999999999999999999 665789999
Q ss_pred cccccCCCCCcccccCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHHHHHHhhhhc-CCCCCCcC
Q 004052 710 QCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIG 773 (776)
Q Consensus 710 ~~WG~~NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAGl~Gi~~-l~~p~p~~ 773 (776)
++||.+|||++||||.. .+++.++|||+|+||++|||||++||+|+|||+||++ ++||+|++
T Consensus 310 ~~wg~~NRsa~iRIP~~--~~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~GI~~ki~p~~p~~ 372 (443)
T COG0174 310 IAWGVRNRSASVRIPAS--GANGKARRVEFRVPDPDANPYLAFAAILAAGLDGIENKLEPGEPVD 372 (443)
T ss_pred hcccccCcceEEEeCCC--CCCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 99999999999999973 1124568999999999999999999999999999999 99999986
No 3
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=4e-88 Score=760.17 Aligned_cols=355 Identities=25% Similarity=0.383 Sum_probs=314.1
Q ss_pred hccCCceEEEEEEecCCCCcceEEecchhhhHHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEeecCCceecc
Q 004052 403 AFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIP 482 (776)
Q Consensus 403 ~~~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~P 482 (776)
+++++|++|+++|+|++|++|+|.||+++|.+...++|++|+.+++. + ....+.+|++++||++|++++|
T Consensus 10 l~~~~i~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~G~~f~~~~~~------g----~~~~~~~D~~l~PD~~Tl~~~P 79 (469)
T PRK09469 10 LNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIG------G----WKGINESDMVLMPDASTAVLDP 79 (469)
T ss_pred HHhCCCCEEEEEEECCCCCEeEEEEEHHHhhHHHhcCCceecccccc------c----cCcCCCCCEEEEEcCCccEECC
Confidence 44578999999999999999999999999985334689888877652 1 1113578999999999999999
Q ss_pred CC-CCceEEEEEccCCC-CCcCCCChHHHHHHHHHHHHHhcCc--eeEEeeeeEEEEEeeccc--C--------------
Q 004052 483 WQ-KQEEMIMADMHLKP-GEPWEYCPREALRKVSRLLKEEFNL--VLNAGFEIEFYLLKSVLR--E-------------- 542 (776)
Q Consensus 483 ~~-~~~a~v~~d~~~~~-g~p~~~~pR~~L~~~~~~~~~~~G~--~~~~g~E~EF~l~~~~~~--~-------------- 542 (776)
|. +++++|+||+++.+ |+|++.|||++|||++++++ +.|+ ++++|+|+|||||++... .
T Consensus 80 w~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~-~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~~~ 158 (469)
T PRK09469 80 FFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLR-STGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEAA 158 (469)
T ss_pred cCCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHH-HcCCCcceeEecceEEEEEeccccccCccccccccccchhc
Confidence 95 56899999999885 89999999999999999998 5799 999999999999985320 0
Q ss_pred ---------CCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeeeeccCCC-CCceEEecccchHHHhhhHHHH
Q 004052 543 ---------GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAG-KGQFEIALGHTVAAKAADNLIF 612 (776)
Q Consensus 543 ---------~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~-pGQ~Ei~l~~~~~l~aaD~~~~ 612 (776)
+..+..|.+.+.||+....+...+++++|++.|+++||+|+++|+|+| ||||||++.|.++|+|||++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~ 238 (469)
T PRK09469 159 WNSGTKYEGGNKGHRPGVKGGYFPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQI 238 (469)
T ss_pred ccccccccCCCCCCccCCCccccCCCcccchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHH
Confidence 111223444444777888899999999999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeeEecccccCCCCCccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCC
Q 004052 613 TREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAP 692 (776)
Q Consensus 613 ~r~~ik~vA~~~G~~aTFmpKP~~~~~GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~P 692 (776)
+|++||+||++||+.|||||||+.+.+|||||+|+|||++|+|+|.+ . +..+||+++++||||||+|++++++|++|
T Consensus 239 ~k~~vk~va~~~g~~atFmpKP~~~~~GsG~H~H~Sl~~~g~N~F~~--~-~~~~ls~~~~~fiaGlL~h~~~l~a~~~P 315 (469)
T PRK09469 239 YKYVVHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAG--D-KYAGLSEQALYYIGGIIKHAKAINALANP 315 (469)
T ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCceeEEEEeecCCCccccCC--C-CcCCcCHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999983 2 23679999999999999999999999999
Q ss_pred CCCcccCCCCCCcCCcccccccCCCCCcccccCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHHHHHHhhhhc-CCCCCC
Q 004052 693 VPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEP 771 (776)
Q Consensus 693 t~nSY~Rl~~~~~ap~~~~WG~~NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAGl~Gi~~-l~~p~p 771 (776)
|+||||||+|++|||+++|||.+||+++||||.. + ++..+|||+|++|++|||||++||+|+||++||++ ++||+|
T Consensus 316 tvNSYkRl~p~~~ap~~~~WG~~NR~a~iRvp~~-~--~~~~~riE~R~~da~aNPYL~~AaiLaAGldGI~~~l~p~~p 392 (469)
T PRK09469 316 TTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVV-A--SPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA 392 (469)
T ss_pred CCchHhhcCCCCcCcCcceecCCCCcceEEeccC-C--CCCCceEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999842 2 12357999999999999999999999999999999 999988
Q ss_pred cCc
Q 004052 772 IGA 774 (776)
Q Consensus 772 ~~~ 774 (776)
++.
T Consensus 393 ~~~ 395 (469)
T PRK09469 393 MDK 395 (469)
T ss_pred CCC
Confidence 753
No 4
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=2.1e-87 Score=749.63 Aligned_cols=348 Identities=32% Similarity=0.528 Sum_probs=308.6
Q ss_pred hccCCceEEEEEEecCCCCcceEEecchhhhHHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEeecCCceecc
Q 004052 403 AFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIP 482 (776)
Q Consensus 403 ~~~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~P 482 (776)
+++++|++|+++|+|++|++|+|.||.++|.+.+ ++|++|+.+++.+.. ...+.+|++|+||++|++++|
T Consensus 5 l~~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~~-~~G~~~~~~~~~~~~---------~~~~~~D~~l~PD~~Tl~~~p 74 (435)
T TIGR03105 5 ARDKGIKYFLASFVDLHGVQKAKLVPAEAIDHMA-TGGAGFAGFAAWGLG---------QSPADPDLMAIPDLDSLTQLP 74 (435)
T ss_pred HhhCCCCEEEEEEECCCCCeeEEEEeHHHHHHHH-cCCCcccchhhhccC---------CCCCCCCEEEEeccccceeCC
Confidence 3456899999999999999999999999999864 689999877665311 012458999999999999999
Q ss_pred CCCCceEEEEEccCCCCCcCCCChHHHHHHHHHHHHHhcCceeEEeeeeEEEEEeecccCCCC---CccccCCCCcccCC
Q 004052 483 WQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE---EWVPIDFTPYCSTA 559 (776)
Q Consensus 483 ~~~~~a~v~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~---~~~p~~~~~~~~~~ 559 (776)
|.+++++|+||++. +|+|++.|||++|||++++++ +.|+++++|+|+||||+++.. ++.. ...+....++|+..
T Consensus 75 w~~~~a~v~~d~~~-~G~p~~~~PR~vL~r~~~~~~-~~G~~~~~g~E~EF~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 151 (435)
T TIGR03105 75 WQPGVAWVAADLHV-NGKPYPQAPRVVLKRQLAEAA-ELGLTLNTGVECEFFLLRRDE-DGSLSIADRADTLAKPCYDQR 151 (435)
T ss_pred CCCCeEEEEEEEee-CCCcCCCCHHHHHHHHHHHHH-hcCCceeEEeceEEEEEecCC-CCCcccCCCCCCCCccCCCCc
Confidence 99999999999975 899999999999999999998 579999999999999998632 1110 11111123356666
Q ss_pred ccccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecccccCCCC
Q 004052 560 AYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDI 639 (776)
Q Consensus 560 ~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpKP~~~~~ 639 (776)
..+...+|+++|++.|+++||+|+++|+|+|||||||++.|.++++|||+++++|++||+||++||+.|||||||+.+.+
T Consensus 152 ~~~~~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~~~ 231 (435)
T TIGR03105 152 GLMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFADLT 231 (435)
T ss_pred chhhhhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCCCC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccceeeecccc-CCccccccCCCCCC--CCCcHHHHHHHHHHHHHHHHhHhhhCCCCCcccCCCCC------CcCCccc
Q 004052 640 GSGSHVHLSLWQ-NGENVFMASDSSSK--HGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPN------TWSGAYQ 710 (776)
Q Consensus 640 GsG~HvH~Sl~~-~g~n~f~~~d~~~~--~~ls~~~~~fiaGil~h~~al~a~~~Pt~nSY~Rl~~~------~~ap~~~ 710 (776)
|||+|+|+|||+ +|+|+|. |++++ .+||+++++||||||+|++++++|++||+||||||+|+ +|||+++
T Consensus 232 GsG~H~H~Sl~d~~g~n~f~--d~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP~~~ 309 (435)
T TIGR03105 232 GNGCHFHLSLWDEDGRNLFA--DDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAPNFI 309 (435)
T ss_pred ccceEEEEeeecCCCccccc--CCCCCccccccHHHHHHHHHHHHHHHHHHHHHCCCCccccccCCCcCCcCcccCCcee
Confidence 999999999995 7899998 44343 45999999999999999999999999999999999995 8999999
Q ss_pred ccccCCCCCcccccCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHHHHHHhhhhc-CCCCCCcC
Q 004052 711 CWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIG 773 (776)
Q Consensus 711 ~WG~~NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAGl~Gi~~-l~~p~p~~ 773 (776)
|||.+||+++||||. .+|||+|++|++|||||++||+|+||++||++ ++||+|++
T Consensus 310 ~WG~~NR~a~iRv~~--------~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~p~~ 365 (435)
T TIGR03105 310 SYGGNNRTHMVRIPD--------PGRFELRLADGAANPYLAQAAILAAGLDGIERKLDPGPPRD 365 (435)
T ss_pred eccCCCCceeEeccC--------CCeeEecCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999983 25999999999999999999999999999999 99999864
No 5
>PLN02284 glutamine synthetase
Probab=100.00 E-value=2.5e-73 Score=620.41 Aligned_cols=321 Identities=21% Similarity=0.223 Sum_probs=273.3
Q ss_pred ceEE--EEEEecCCCCcceEEecchhhhHHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEeecCCceeccCCC
Q 004052 408 VSLI--RVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (776)
Q Consensus 408 i~~v--~~~~~D~~G~~r~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~P~~~ 485 (776)
++|| ++.|+|+.|..|...+|.+.+.+. .|++|+++++++.. .+.+|++|+|| |++++||.+
T Consensus 21 ~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~---~~~~fdGssi~~~~-----------~~~sD~~l~PD--t~~~~Pw~~ 84 (354)
T PLN02284 21 AEYIWIGGSGMDLRSKARTLPGPVTDPSKL---PKWNYDGSSTGQAP-----------GEDSEVILYPQ--AIFKDPFRG 84 (354)
T ss_pred EEEEEEEEEecCCCCceEEecccccccccC---CceeecCCCCCCcc-----------CCCceEEEEcc--EEEECCCCC
Confidence 4555 778889999999999999888764 69999998875421 24679999999 999999975
Q ss_pred -CceEEEEEccCCCCCcCCCChHHHHHHHHHHHHHhcCceeEEeeeeEEEEEeeccc--CCCC-CccccCCCCcccCCcc
Q 004052 486 -QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAAY 561 (776)
Q Consensus 486 -~~a~v~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~--~~~~-~~~p~~~~~~~~~~~~ 561 (776)
++++|+||++++||+|++.|||++|||+++++++ .|+++++|+|+|||||+.... .+.+ +..|.++++||+..+.
T Consensus 85 ~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~-~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~ 163 (354)
T PLN02284 85 GNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDV-AAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGA 163 (354)
T ss_pred CCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHh-cCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcch
Confidence 5789999999999999999999999999999985 799999999999999985321 1111 1245566777765553
Q ss_pred --ccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecccccCC-C
Q 004052 562 --DAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALD-D 638 (776)
Q Consensus 562 --~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpKP~~~-~ 638 (776)
...++++++++++|+++||+|+++|+|+|||||||++.|.++|++||+++++|++||+||++||+.|||||||+.+ .
T Consensus 164 ~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~ 243 (354)
T PLN02284 164 DKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDW 243 (354)
T ss_pred hhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCC
Confidence 3357999999999999999999999999999999999999999999999999999999999999999999999885 5
Q ss_pred CCccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHH-HHHHHHhHhhhCCCCCcccCCCCCCcCCc--ccccccC
Q 004052 639 IGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGV-LHHLSSILAFTAPVPNSYDRIQPNTWSGA--YQCWGKE 715 (776)
Q Consensus 639 ~GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGi-l~h~~al~a~~~Pt~nSY~Rl~~~~~ap~--~~~WG~~ 715 (776)
+|||||+|+|||+..++ +.+...+++++|+ |+|+++|+||++ ||||||+|++|||. +++||.+
T Consensus 244 ~GSGmH~H~SL~~~~~~-----------gg~~~~~~~l~~~~l~h~~~l~a~~~---NSYkRL~p~~eap~~~~~~wg~~ 309 (354)
T PLN02284 244 NGAGAHTNYSTKSMRED-----------GGYEVIKKAIEKLGLRHKEHIAAYGE---GNERRLTGKHETADINTFSWGVA 309 (354)
T ss_pred ccCcceeecChhhcccC-----------CcHHHHHHHHHHHHHHHHHHhhhhhc---CcHhhcCCCccCcccccceeecC
Confidence 99999999999962110 0123457899999 999999999997 99999999999995 8999999
Q ss_pred CCCCcccccCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHHHHHHh
Q 004052 716 NREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGID 761 (776)
Q Consensus 716 NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAGl~ 761 (776)
||+++||||...+. .+.+|||+|+||++|||||++||+|++++.
T Consensus 310 NRsa~iRIP~~~~~--~~~~riE~R~pd~~aNPYLa~aaila~~~~ 353 (354)
T PLN02284 310 NRGASIRVGRDTEK--EGKGYFEDRRPASNMDPYVVTSMIAETTIL 353 (354)
T ss_pred CCceeEEECCCCCC--CCCCEEEEcCCCCCCCHHHHHHHHHHHHhc
Confidence 99999999963321 235799999999999999999999999875
No 6
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=1.3e-70 Score=579.26 Aligned_cols=251 Identities=42% Similarity=0.717 Sum_probs=220.4
Q ss_pred CCChHHHHHHHHHHHHHhcCceeEEeeeeEEEEEeecccCCCC--Cccc----cCCCCcccCCccccchHHHHHHHHHHH
Q 004052 503 EYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE--EWVP----IDFTPYCSTAAYDAVSPVFQEVLADLH 576 (776)
Q Consensus 503 ~~~pR~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~--~~~p----~~~~~~~~~~~~~~~~~~~~~i~~~l~ 576 (776)
+.|||++|||+++++++ .|+++++|+|+|||||++....+.+ ...+ ....++|+....+...+++++|++.|+
T Consensus 1 ~~~PR~~Lkr~~~~~~~-~g~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 79 (259)
T PF00120_consen 1 EACPRSILKRVLERLEE-MGLSFKVGFELEFYLFDRDDDGGWPRPSGYPDEPGQDYGGYYSLSPLDAGEDFLEEIVDALE 79 (259)
T ss_dssp -T-HHHHHHHHHHHHHH-TCCEEEEEEEEEEEEESTCEETTSSSTTSEESESSSTTTBSSTTTTTSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-hCCceEEEEeEEEEEeccCcccccccccccccccccccCCcCCCchhhHHHHHHHHHHHHHH
Confidence 47999999999999985 7999999999999999984332222 1112 134567777778899999999999999
Q ss_pred hCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecccccCCCCCccceeeecccc--CCc
Q 004052 577 SLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQ--NGE 654 (776)
Q Consensus 577 ~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpKP~~~~~GsG~HvH~Sl~~--~g~ 654 (776)
++||+|+++|+|+|||||||++.|++++++||+++++|++||+||++||+.|||||||+.+.+|||+|+|+|||+ +|+
T Consensus 80 ~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~~GsG~H~h~Sl~~~~~g~ 159 (259)
T PF00120_consen 80 QAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGDNGSGMHLHISLWDAKDGK 159 (259)
T ss_dssp HCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTSS--BEEEEEEECHHHTTE
T ss_pred HhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCcCccchhhhhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCCCcccCCCCCCcCCcccccccCCCCCcccccCCCCCCCCCc
Q 004052 655 NVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVV 734 (776)
Q Consensus 655 n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~nSY~Rl~~~~~ap~~~~WG~~NR~a~iRi~~~~~~~~~~~ 734 (776)
|+|. |++++.+||+++++||||||+|+++|++|++||+||||||+|++|||++++||.+||+++||||.. ...+.
T Consensus 160 n~f~--~~~~~~~ls~~~~~flaGll~h~~~l~a~~~pt~nsykRl~~~~~ap~~~~wG~~NR~a~iRi~~~---~~~~~ 234 (259)
T PF00120_consen 160 NLFY--DPDGPAGLSELARHFLAGLLKHAPALTAFTAPTVNSYKRLVPGSWAPTYISWGYDNRSAAIRIPSG---GGPKG 234 (259)
T ss_dssp ETTB--STTSHGHHHHHHHHHHHHHHCHHHHHHHCHSTSTTHHHHSSSTSSSSSBEEEEESHTTSSEEE-HH---HHHGG
T ss_pred cccc--cccccccccHHHHHHHHHHHHHHHHHHhhhCccCcchhhCCCCccceeccchhhcccchhhheecc---ccccc
Confidence 9999 555567899999999999999999999999999999999999999999999999999999999973 11345
Q ss_pred cEEEEcCCCCCCcHHHHHHHHHHHH
Q 004052 735 SNFELKSFDGCANPHLGLAAIIASG 759 (776)
Q Consensus 735 ~~~E~R~~d~~aNPYL~lAailaAG 759 (776)
+|||+|++|++|||||++||||+||
T Consensus 235 ~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 235 TRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp SEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred cEEeccCCCCCcCHHHHHHHHHhcC
Confidence 8999999999999999999999998
No 7
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=8.3e-69 Score=591.05 Aligned_cols=322 Identities=20% Similarity=0.250 Sum_probs=269.1
Q ss_pred eEEEEEEecCCC-CcceEEecchhhhHHHhh-ccccccccccccccccCCCCCCCCCCCCCcEEEEeecCCceeccCCC-
Q 004052 409 SLIRVIWVDASG-QHRCRVVPVKRFNDIVTK-YGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK- 485 (776)
Q Consensus 409 ~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~P~~~- 485 (776)
-.+.+.|+|.+| .+|||.-.+..-.+.+.+ .|++|+++++++.. .+.+|++|+|| |++++||.+
T Consensus 79 ~~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~-----------~~~sD~~l~PD--Tl~~~Pw~~~ 145 (432)
T PLN03036 79 IIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAP-----------GEDSEVILYPQ--AIFKDPFRGG 145 (432)
T ss_pred EEEEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCc-----------CCCCCEEEEcc--EEEECCcCCC
Confidence 367888999999 688886654332222211 58899988875321 24689999999 999999965
Q ss_pred CceEEEEEccCCCCCcCCCChHHHHHHHHHHHHHhcCceeEEeeeeEEEEEeeccc--CCCC-CccccCCCCcccCCccc
Q 004052 486 QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAAYD 562 (776)
Q Consensus 486 ~~a~v~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~--~~~~-~~~p~~~~~~~~~~~~~ 562 (776)
++++|+||++++||+|++.|||++|++++++++ ..|+++++|+|+|||||+.... .|.+ +..|..+++||+..+.+
T Consensus 146 ~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~-~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d 224 (432)
T PLN03036 146 NNILVICDTYTPAGEPIPTNKRHRAAEIFSNKK-VVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGAD 224 (432)
T ss_pred CeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhc-ccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhh
Confidence 579999999999999999999999999999987 4699999999999999985321 1211 23455677777766555
Q ss_pred c--chHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecccccCC-CC
Q 004052 563 A--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALD-DI 639 (776)
Q Consensus 563 ~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpKP~~~-~~ 639 (776)
. .++++++++++|+.+||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||+.|||||||+.+ .+
T Consensus 225 ~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~ 304 (432)
T PLN03036 225 KSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWN 304 (432)
T ss_pred hhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcC
Confidence 4 58999999999999999999999999999999999999999999999999999999999999999999999874 69
Q ss_pred CccceeeeccccCCcc-ccccCCCCCCCCCcHHHHHHHHH-HHHHHHHhHhhhCCCCCcccCCCCCCcCC--cccccccC
Q 004052 640 GSGSHVHLSLWQNGEN-VFMASDSSSKHGMSSVGEKFMAG-VLHHLSSILAFTAPVPNSYDRIQPNTWSG--AYQCWGKE 715 (776)
Q Consensus 640 GsG~HvH~Sl~~~g~n-~f~~~d~~~~~~ls~~~~~fiaG-il~h~~al~a~~~Pt~nSY~Rl~~~~~ap--~~~~WG~~ 715 (776)
|||||+|+|||+..++ .| .+.+++++| +|+|+++|+|+++ ||||||+|++||| .+++||.+
T Consensus 305 GSGmHiH~Sl~d~r~~gg~------------~~~~~~i~gl~l~H~~~i~A~~~---NsykRL~~~~ea~~p~~~swG~~ 369 (432)
T PLN03036 305 GAGCHTNYSTKSMREEGGF------------EVIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDTFSWGVA 369 (432)
T ss_pred CCCceeEechhhccccchH------------HHHHHHHhhHHHHHHHHHHhhhc---ChhhccCCCccccCCccceEecc
Confidence 9999999999962110 11 346788888 9999999999998 9999999999995 59999999
Q ss_pred CCCCcccccCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHHHHHHh
Q 004052 716 NREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGID 761 (776)
Q Consensus 716 NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAGl~ 761 (776)
||+++||||...+ ..+++|||+|+||++|||||++|+|+...+.
T Consensus 370 NR~asIRIP~~~~--~~~~~riE~R~pda~aNPYLv~aai~~t~~~ 413 (432)
T PLN03036 370 NRGCSIRVGRDTE--KKGKGYLEDRRPASNMDPYIVTSLLAETTIL 413 (432)
T ss_pred CCcceEEECCCCC--CCcccEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 9999999997431 1225799999999999999999999998874
No 8
>PRK02925 glucuronate isomerase; Reviewed
Probab=100.00 E-value=1.6e-51 Score=448.69 Aligned_cols=361 Identities=16% Similarity=0.178 Sum_probs=302.5
Q ss_pred HHHHHhccCCccccCCCCcc---c--------------CC---------CCcchhhccccccCC----C----ccCCCcc
Q 004052 5 ELREVVENIELVDGHAHNIV---S--------------LD---------SSFPFIQSFSEATGP----A----LSYAPYS 50 (776)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~---~--------------~~---------~~~~~~~~~~ea~~~----~----~~~~~~~ 50 (776)
+|++..+++||||-|||--- . +| .+.|.+.|+.+|++- + +...-++
T Consensus 18 ~LY~~a~~lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg~as~~ekf~~~a~t~p~~~Gn 97 (466)
T PRK02925 18 RLYHDAKDLPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITGDASDREKFRAWAKTVPLFIGN 97 (466)
T ss_pred HHHHHHhcCceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccCCCCHHHHHHHHHHhhhhhcCC
Confidence 57877999999999999722 1 11 334666666666541 1 2245778
Q ss_pred hhhHhHHHHHHhhhCCCC-----CHHHHHHHHH-Hc-CcccHHHHHHhhCCeEEEEEeCCCCCCCCCChHHHHhhcc---
Q 004052 51 LSFKRNLKNIAELYGCDS-----SLQAVEEYRR-AA-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (776)
Q Consensus 51 ~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~-~l-~~~~~~r~ll~~~~v~~i~~d~g~~~d~~~~~~~h~~~~~--- 120 (776)
..|.|.|+||+++|||++ ||++||++|| +| ++++++|.|++++||++||| ||||+|+|+||+++++
T Consensus 98 PlyhW~hlELkr~FGi~~~l~~~nA~~Iwd~~n~~L~~p~f~~r~Ll~~~nVe~icT----TDDP~DdL~~H~~l~~d~~ 173 (466)
T PRK02925 98 PLYHWTHLELRRVFGITELLSPETADEIWDEINELLATPEFRPRALIERFNVEVICT----TDDPLDDLEYHKAIAEDGS 173 (466)
T ss_pred HHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHHCCCCCCHHHHHHHCCceEEEe----cCCCCccHHHHHHHHhcCC
Confidence 889999999999999996 9999999998 56 56799999999999999999 9999999999999874
Q ss_pred ---------ccceEEeccchHH-HHHHHhCC--CCCcccHHHHHHHHHHHHHhhccccccceeeecc--cCCCCCCCC--
Q 004052 121 ---------FVGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH-- 184 (776)
Q Consensus 121 ---------~~~~i~riE~~a~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vGfksv~~y--~~Gl~~~~~-- 184 (776)
++++++.|++..+ +++++|.. |.+|.+|++|++||++|+++ |++.||. ||||+..++
T Consensus 174 f~~~VlPtfRPD~a~~i~~~~f~~~~~kL~~~~g~~i~~~~~ll~AL~~R~~~-------F~~~Gc~~sDHgl~~~~~~~ 246 (466)
T PRK02925 174 FDGRVLPTFRPDKAFNIEHEGFADYVEKLGEVTGTDITTFDGLLEALRKRRDY-------FAAHGCRSSDHGLDTVVTAE 246 (466)
T ss_pred CCceEecCcCCccccCCCchhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHcCCEEhhcCCCccCCCC
Confidence 2579999999877 79998864 77899999999999999998 7777775 999996554
Q ss_pred CCHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCcCC----cC
Q 004052 185 VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRL----SN 247 (776)
Q Consensus 185 ~~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~------------g-d~~~~~~~----~~ 247 (776)
.+.++++++|+++++++.....+...+..+++..+.++++|.||+||+|.|. | |.|.|... +.
T Consensus 247 ~~~~e~~~if~k~~~g~~lt~~E~~~f~~~~l~~la~~y~e~gwvmQlH~Ga~Rn~n~~~~~~lG~DtG~Dsi~d~~~a~ 326 (466)
T PRK02925 247 LSEAEADAIFAKALAGGTLTEEEIAQFRTAMLTELARMYAEDGWVMQLHIGALRNNNTRMFKKLGPDTGFDSIGDTPIAE 326 (466)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCeEEeecccccCCCHHHHHHhCCCCCcCCCCchhHHH
Confidence 6899999999999985332333445566779999999999999999999998 4 55655443 33
Q ss_pred hh--hhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe------eeecccccCCCccHHHHHHHHHHHHHHCCCCc
Q 004052 248 PL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ------VYLDFGLAIPKLSVQGMISSIKELLELAPTKK 319 (776)
Q Consensus 248 P~--~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN------Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~k 319 (776)
++ +|+.+-+.+++|+++++.+++.+ ..+.+.|++.||+ ||++.+|||++. ++||.+++..+.+.+++++
T Consensus 327 ~L~~lL~~l~~~~~LpktIly~Lnp~~--n~~lat~~g~F~~~~~~gkvq~Ga~WWFnD~-~~GM~~ql~~la~~glls~ 403 (466)
T PRK02925 327 ALSPLLDALGNENDLPKTILYTLNPTD--NEELATMAGNFQGLGIPGKMQFGAGWWFNDQ-KDGMERQMEQLAETGLLSN 403 (466)
T ss_pred HHHHHHHhcccCCCCCeEEEEecCccc--HHHHHHHHcccCCCCCCCccccccchhhccC-HHHHHHHHHHHHhccchhh
Confidence 43 56666667899999999999976 3478999999975 599999999985 9999999999999999999
Q ss_pred EE-EecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhh--HHHHHHHHHHHhHHHHhCCC
Q 004052 320 VM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGE--AIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 320 il-fgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~e--a~~~~~~Il~~NA~rly~l~ 381 (776)
++ |.||+|+|. +|++|++|||+||++|++||++|++|.++ +.+++++|||+||+++|++.
T Consensus 404 fvGmltDSRsfl--Sy~RHeyFRRilc~~lg~~Ve~G~~P~d~~~l~~iv~dI~y~Na~~yF~~~ 466 (466)
T PRK02925 404 FVGMLTDSRSFL--SYARHEYFRRILCNFLGRWVEEGELPADEELLGEMVKDICYNNAKRYFKLE 466 (466)
T ss_pred cccccccHHHHH--hhhHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhHHHhcCCC
Confidence 99 999999999 68999999999999999999999998555 78999999999999999863
No 9
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=411.89 Aligned_cols=359 Identities=17% Similarity=0.198 Sum_probs=299.2
Q ss_pred HHHHHhccCCccccCCCCccc-----------------CC---------CCcchhhccccccCC----C----ccCCCcc
Q 004052 5 ELREVVENIELVDGHAHNIVS-----------------LD---------SSFPFIQSFSEATGP----A----LSYAPYS 50 (776)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~~-----------------~~---------~~~~~~~~~~ea~~~----~----~~~~~~~ 50 (776)
.|...+.++||||-|||--=. +| .+.+-+.++.++++. + .....++
T Consensus 17 ~l~~~vkdlPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itgd~sdrEkw~afa~~~~~~~Gn 96 (463)
T COG1904 17 RLHAYVKDLPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITGDTSDREKWRAFAKTVPLFIGN 96 (463)
T ss_pred HHHHhhcCCCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCCCCChHHHHHHHHHhhhhhcCC
Confidence 567789999999999995321 11 222333444443331 1 1235677
Q ss_pred hhhHhHHHHHHhhhCCCC-----CHHHHHHHHHH-c-CcccHHHHHHhhCCeEEEEEeCCCCCCCCCChHHHHhhccc--
Q 004052 51 LSFKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVPF-- 121 (776)
Q Consensus 51 ~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~i~~d~g~~~d~~~~~~~h~~~~~~-- 121 (776)
..|.|.|++|+++|||++ |+++||+++++ | ++++++|.|++++||++||| ||||+|+|+||++++++
T Consensus 97 P~y~W~hlel~r~FgI~e~ls~~tad~iwd~~n~~La~~~frpRaL~~~~NVevv~T----TDdP~dsL~~H~~l~~d~~ 172 (463)
T COG1904 97 PLYHWTHLELERVFGITELLSEETADEIWDEINDLLAQPDFRPRALIEQFNVEVVCT----TDDPIDSLEYHKELAEDGF 172 (463)
T ss_pred cchhhhHHHHhhhcCcccccCcccHHHHHHHHHHHhCCCCCCHHHHHHHcCeeEEec----CCCCcccHHHHHHHHhcCC
Confidence 788999999999999997 99999999985 4 46799999999999999999 99999999999999873
Q ss_pred ---------cceEEeccchHH-HHHHHhCC--CCCcccHHHHHHHHHHHHHhhccccccceeeecc--cCCCCCCCC--C
Q 004052 122 ---------VGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH--V 185 (776)
Q Consensus 122 ---------~~~i~riE~~a~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vGfksv~~y--~~Gl~~~~~--~ 185 (776)
+++++.||...+ +++++++. |.++.+|++|++|+++|+++ ||+.||. ||||+..+. .
T Consensus 173 ~~~VlPa~RPD~~~~i~~~gf~~~~~kL~~~ag~~~~~~~~~l~Al~~R~~~-------F~~~G~~sSDH~l~t~~~a~~ 245 (463)
T COG1904 173 HGRVLPAWRPDAAVDIERAGFADYVEKLGEVAGTDISTWDGYLDALRKRREY-------FKSHGATSSDHGLDTADTAEL 245 (463)
T ss_pred CceeccCcCCccccCCCccchHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-------HHHcCCcccccCCCccccccC
Confidence 579999999877 89998864 77899999999999999998 8888885 999998766 7
Q ss_pred CHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCcC----CcCh
Q 004052 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLR----LSNP 248 (776)
Q Consensus 186 ~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~------------g-d~~~~~~----~~~P 248 (776)
+..+|.++|.|.+++......+...+...++..+.+++++.||+||+|+|. | |.|+|.+ ++++
T Consensus 246 ~~~~a~~if~k~l~G~~lt~~E~~~f~a~~l~~l~km~~~~gwVmQiH~ga~RN~n~~~~~k~G~D~GfDi~~~~~~a~~ 325 (463)
T COG1904 246 SEADADAIFDKRLAGEALSTEEAEQFKAAMLTELAKMSAEDGWVMQIHPGALRNHNPRMFKKLGPDTGFDIPNDTEIAEG 325 (463)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhhcCeeEEecccccccCCHHHHHHhCCCCCCCCCCcchhHHH
Confidence 889999999999987433333444556668899999999999999999998 4 5666554 4555
Q ss_pred h--hhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHH------hCCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcE
Q 004052 249 L--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAY------VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKV 320 (776)
Q Consensus 249 ~--~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~------~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~ki 320 (776)
+ +|+.+-.+++.|++.++++++.+ ..+.+.|++ .+|++|++++|||++. ++||..++..+.+++++.++
T Consensus 326 L~~LLd~~~~~~~L~k~ily~lnp~~--~~~latm~g~fq~~~~~~~~q~G~~WWFnD~-~dGM~r~~e~la~~gl~~nf 402 (463)
T COG1904 326 LKPLLDAFGEDNDLPKTILYLLNPND--NEVLATMAGNFQGEGVSPKLQFGPAWWFNDS-KDGMERQREQLASLGLLSNF 402 (463)
T ss_pred HHHHHHhhcccCCCceEEEEecCCch--hHHHHHHHhhccccccCcccccCcchhhcCC-hHHHHHHHHHHHHHHHHHhh
Confidence 4 66766667899999999999986 456799998 7899999999999984 89999999999999999999
Q ss_pred E-EecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhH--HHHHHHHHHHhHHHHhC
Q 004052 321 M-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA--IEVAKDIFALNAAQFYK 379 (776)
Q Consensus 321 l-fgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea--~~~~~~Il~~NA~rly~ 379 (776)
+ |.||+|+|+ +|++|++|||++|+++++||++|+++.+++ ..+...|+|+|++.+|.
T Consensus 403 vGmltDsRsfl--Sy~Rhe~fRRilC~~igr~veeg~~p~dea~~~~~~~~i~y~n~~~~f~ 462 (463)
T COG1904 403 VGMLTDSRSFL--SYTRHEYFRRILCALIGRWVEEGEIPRDEALLGVIVKNICYNNAVDYFA 462 (463)
T ss_pred hcccccchhhh--cccHHHHHHHHHHHHHHHHHHcCCCCcchHHhhhhhhhcccccHHHHhc
Confidence 9 999999999 689999999999999999999999999886 36777899999999885
No 10
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=100.00 E-value=1.2e-45 Score=410.46 Aligned_cols=359 Identities=17% Similarity=0.183 Sum_probs=263.6
Q ss_pred hHHHHH-hccCCccccCCCCccc---CC-----------------------CCcchhhccccccCCC--------ccCCC
Q 004052 4 EELREV-VENIELVDGHAHNIVS---LD-----------------------SSFPFIQSFSEATGPA--------LSYAP 48 (776)
Q Consensus 4 ~~l~~~-i~~~p~iD~H~H~~~~---~~-----------------------~~~~~~~~~~ea~~~~--------~~~~~ 48 (776)
.+|++- ++++||||-|||-.-. .+ .+.|.+.+++++.... +....
T Consensus 16 ~~Ly~~~a~~lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg~a~~~ekF~a~a~~~~~~~ 95 (462)
T PF02614_consen 16 RRLYHEYAKDLPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITGDASPREKFRAWAETVPRFI 95 (462)
T ss_dssp HHHHHHCCTTS-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTCSSSHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHhCCCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhhhhc
Confidence 356654 8999999999996542 11 1224333444332210 12345
Q ss_pred cchhhHhHHHHHHhhhCCCC-----CHHHHHHHHH-Hc-CcccHHHHHHhhCCeEEEEEeCCCCCCCCCChHHHHhhccc
Q 004052 49 YSLSFKRNLKNIAELYGCDS-----SLQAVEEYRR-AA-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVPF 121 (776)
Q Consensus 49 ~~~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~-~l-~~~~~~r~ll~~~~v~~i~~d~g~~~d~~~~~~~h~~~~~~ 121 (776)
++..|.|.|++|+++|||++ |+++||++++ .+ .+++++|.|++++||++||| ||||+|+|+||+.+++.
T Consensus 96 gnp~~~W~hleL~r~FGid~~L~~~~a~~I~d~~n~~l~~~~~~~r~l~~~~nV~~v~T----TDDP~D~L~~H~~l~~~ 171 (462)
T PF02614_consen 96 GNPLYHWTHLELKRYFGIDEPLSEENADEIWDACNEKLATPEFSPRALLRRSNVEVVCT----TDDPLDDLEYHRWLAED 171 (462)
T ss_dssp TSHHHHHHHHHHHHCTT--C-GSHHHHHHHHHHHHHHHTSGGGSHHHHHHHTTEEEEE------B-TTSHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHhcccCcCHHHHHHHCCceEEEe----CCCCCCchHHHHHHhcc
Confidence 78889999999999999996 8999999998 44 56799999999999999999 99999999999999741
Q ss_pred ------------cceEEeccchHH-HHHHHhCC--CCCcccHHHHHHHHHHHHHhhccccccceeeecc--cCCCCCCCC
Q 004052 122 ------------VGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH 184 (776)
Q Consensus 122 ------------~~~i~riE~~a~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vGfksv~~y--~~Gl~~~~~ 184 (776)
+++++.|+...+ +++++|+. |.+|.++++|++|+++|+++ |++.+|. +|||...+.
T Consensus 172 ~~~~~~v~PtfRpD~~l~i~~~~~~~~l~~L~~~~g~~i~~~~~l~~Al~~r~~~-------F~~~G~~~sDh~l~~~~~ 244 (462)
T PF02614_consen 172 ENFDPRVLPTFRPDKALNIDWPGFADYLEKLGEAAGIEISTFEDLLEALRKRRDY-------FKEMGCRASDHGLPDFPF 244 (462)
T ss_dssp CCT-TEEE-EBEGHHHHHTTSTTHHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-------HHHTT-SEEEEEESS--S
T ss_pred CCCCceEecccCcccccCCChhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHhCCeEeecCCCcccC
Confidence 457777777766 88888864 78899999999999999998 7777884 999985544
Q ss_pred --CCHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCcCCcCh-
Q 004052 185 --VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRLSNP- 248 (776)
Q Consensus 185 --~~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~------------g-d~~~~~~~~~P- 248 (776)
++.++++++|.|++++......+...+..+++..+.++|+|+|||||+|.|+ | |.|.|.....+
T Consensus 245 ~~~~~~e~~~if~k~~~g~~ls~~e~~~~~~~ll~~l~~~~~e~g~vmQlHiGa~Rn~n~~~~~~lG~D~G~D~~~~~~~ 324 (462)
T PF02614_consen 245 PPPSEEEAERIFKKALAGESLSAEEIDKFRTYLLWELAKMYAERGWVMQLHIGALRNNNSRMFPRLGPDTGFDSIGDFPD 324 (462)
T ss_dssp S---HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-EETTSSHHHHHHTGSSSSG-EE-S--H
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCcccCCCHHHHHHhCCCCCCCCCCchHH
Confidence 6788999999999887433344445566779999999999999999999998 3 44554433322
Q ss_pred -hhhHHHH----HhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-----eeeecccccCCCccHHHHHHHHHHHHHHCCCC
Q 004052 249 -LHLRAIL----EDKRFSKCRFVLLHASYPFSKEASYLAYVYP-----QVYLDFGLAIPKLSVQGMISSIKELLELAPTK 318 (776)
Q Consensus 249 -~~L~~l~----~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p-----NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~ 318 (776)
..|..++ +.+++|++.++++.+. +..+++.+|++|| |||++.+|||++. ++||.++++.+.+.++..
T Consensus 325 ~~~L~~ll~~~~~~~~lpk~ily~Ln~~--~~~~la~lag~F~~~~~~~vq~G~~WWF~D~-~~gm~~q~~~~~~~~ll~ 401 (462)
T PF02614_consen 325 AEALSRLLDRFDNNGKLPKTILYSLNPT--DNHELATLAGNFQDGGIPKVQLGGAWWFNDT-PDGMERQMTALAEMGLLS 401 (462)
T ss_dssp HHHHHHHHHHHTTTTT-SEEEEEESSGG--GHHHHHHHHHHST-TTSTTEEEB---GGG-S-HHHHHHHHHHHHHHCHGC
T ss_pred HHHHHHHHHhccccCCCceeEEEecChh--hHHHHHHHHhhcCCcCcceeeecCcccccCC-HHHHHHHHHHHHHHhCcc
Confidence 1344444 4457778888888876 5678899999999 9999999999985 889999999999999999
Q ss_pred cEE-EecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHH--HHHHHHHHHhHHHHh
Q 004052 319 KVM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAI--EVAKDIFALNAAQFY 378 (776)
Q Consensus 319 kil-fgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~--~~~~~Il~~NA~rly 378 (776)
|++ |.||+|+|. +|++|++|||+||++|++||++|.+|.+++. +++++|||+||+++|
T Consensus 402 ~fvGmltDsRsfl--S~~RheyfRRilc~~lg~~ve~g~~p~d~~~l~~~v~di~y~na~~yf 462 (462)
T PF02614_consen 402 NFVGMLTDSRSFL--SYPRHEYFRRILCNVLGEWVEEGEWPEDEAFLGRIVEDICYNNAKRYF 462 (462)
T ss_dssp GCB------SCTT--HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTHHHHHHC
T ss_pred ceeceecchHHHh--hhhHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhHHHhC
Confidence 999 999999999 5699999999999999999999999998865 899999999999986
No 11
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=322.10 Aligned_cols=332 Identities=20% Similarity=0.279 Sum_probs=254.6
Q ss_pred hhhccCCceEEEEEEecCCC-CcceEEecchhhhHHHhhc-cccccccccccccccCCCCCCCCCCCCCcEEEEeecCCc
Q 004052 401 SDAFESDVSLIRVIWVDASG-QHRCRVVPVKRFNDIVTKY-GVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTR 478 (776)
Q Consensus 401 ~~~~~~~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~ 478 (776)
.|...++--.+.++|+|.+| .+|+|+-.+..-.+.+.+. -.++.+++.++.. +..+|.+|+|. .+
T Consensus 22 ~L~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA~-----------g~nSd~~l~Pv--a~ 88 (380)
T KOG0683|consen 22 YLRAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQAP-----------GENSDVYLRPV--AI 88 (380)
T ss_pred cccccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCccccccc-----------CCCCceEEeeh--hh
Confidence 45566666788999999999 7999988776655544332 3345555544332 23589999999 88
Q ss_pred eeccCCCC-ceEEEEEccCCCCCcCCCChHHHHHHHHHHHHHhcCceeEEeeeeEEEEEeecccCCCC-Cc----cccCC
Q 004052 479 WRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE-EW----VPIDF 552 (776)
Q Consensus 479 ~~~P~~~~-~a~v~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~-~~----~p~~~ 552 (776)
.+.|+..+ ..+|+|+.++.+|.|.+.+-|..+.+++.... -..-++|+|.|+||.+++.. ++.+ +| -|..+
T Consensus 89 ~~dPfr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~-~~~~~PWfg~Eqeyt~l~~~--~~~p~gwp~~GFp~Pq 165 (380)
T KOG0683|consen 89 YPDPFRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLS-TKDTEPWFGMEQEYTLLDAL--DGHPFGWPKGGFPGPQ 165 (380)
T ss_pred cCCcccCCCCEEEEeeccCCCCCcccccchhhHHHHhcccc-ccccCCchhhhHHHhhhccc--cCCcccCCccCCCCCC
Confidence 99999865 48999999999999999999999999999885 23568999999999999873 2211 22 35567
Q ss_pred CCcccCCcccc--chHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEe
Q 004052 553 TPYCSTAAYDA--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (776)
Q Consensus 553 ~~~~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTF 630 (776)
++|++..+.++ .+++.+..+.+|..+||.+.+++.|+.||||||++.|+.++.++|+++.+|+++++||+++|+.|||
T Consensus 166 gpyyc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf 245 (380)
T KOG0683|consen 166 GPYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASF 245 (380)
T ss_pred CCceeeccccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEe
Confidence 88888766665 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC-CCCccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHHH-HHHHHhHhhhCCC--CCcccCCCCCCcC
Q 004052 631 VPKFALD-DIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVL-HHLSSILAFTAPV--PNSYDRIQPNTWS 706 (776)
Q Consensus 631 mpKP~~~-~~GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGil-~h~~al~a~~~Pt--~nSY~Rl~~~~~a 706 (776)
.|||..+ ++|+|+|.++|..+. +. .++++.+ ...+-.+= .|.-.+.+ +-|. ...-+||...+++
T Consensus 246 ~pKp~~g~WngaG~Htn~ST~~m----r~------~~g~~~i-~~a~~~ls~rh~~hi~~-ydp~~G~dN~rrltg~hEt 313 (380)
T KOG0683|consen 246 DPKPILGDWNGAGCHTNFSTKEM----RE------AGGLKII-EEAIPKLSKRHREHIAA-YDPKGGKDNERRLTGRHET 313 (380)
T ss_pred cCCCCCCcccCcccccccchhHH----Hh------ccCHHHH-HHHhhhcchhhhhhhhh-cCccCCccchhhhcCCCcc
Confidence 9999765 699999999998531 00 0122221 22222222 23333332 2232 2334666665666
Q ss_pred C--cccccccCCCCCcccccCCCCCCCCCccEEEEcCCCCCCcHHHHHHHHHHHHHhh
Q 004052 707 G--AYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDG 762 (776)
Q Consensus 707 p--~~~~WG~~NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAGl~G 762 (776)
+ ..++||.-||.+.||||.... ....+.+|.|.||.+++||+|..+++-..|..
T Consensus 314 ~~i~~Fs~GvAnr~~siri~r~va--~~~~Gy~edrrP~sN~Dpy~Vt~~~~~t~l~~ 369 (380)
T KOG0683|consen 314 GSIDNFSWGVANRNPSIRIPRTVA--AEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLE 369 (380)
T ss_pred ccccccccccccCCceeeechhhh--cccccccccCCCcCCCCcceeeHHHhhHHHhc
Confidence 6 469999999999999997433 34568999999999999999999999877653
No 12
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.93 E-value=6.4e-25 Score=234.78 Aligned_cols=196 Identities=28% Similarity=0.380 Sum_probs=157.1
Q ss_pred HHHHHHHHhhccccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCC--CC----CcCCchhhhhHHHHHHHHHHhhC
Q 004052 153 ETFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG--KP----VRITNKSLIDYIFISSLEVAQFL 226 (776)
Q Consensus 153 ~al~~~l~~~~~~~vGfksv~~y~~Gl~~~~~~~~~ea~~~~~r~l~~~--~~----~~~~~~~l~d~~l~~l~e~a~e~ 226 (776)
+.+.+-...++++++||.+ ++|. +++.|.++++|++++. ++ ........+++.++|+|+.|+++
T Consensus 87 d~~a~~~~~~pdrf~~~~~---------v~p~-~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~ 156 (293)
T COG2159 87 DDLAALAAEYPDRFVGFAR---------VDPR-DPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEEL 156 (293)
T ss_pred HHHHHHHhhCCcceeeeee---------eCCC-chHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHc
Confidence 4566666678999999998 6665 4577899999999864 11 23345567788899999999999
Q ss_pred CCcEEEecCCCCCCCCcCC--cChhhhHHHHHhcCCCCcEEEEeCCC--CchHHHHHHHHHhCCeeeecccccCCCccHH
Q 004052 227 DLPLQIHTGFGDKDLDLRL--SNPLHLRAILEDKRFSKCRFVLLHAS--YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQ 302 (776)
Q Consensus 227 glPvq~H~G~gd~~~~~~~--~~P~~L~~l~~~~~~P~l~ivl~H~g--~p~~~e~~~la~~~pNVyld~s~~~~~~~~~ 302 (776)
|+||++|+|.++.+..... ++|++++++++ +||+++||++|+| +||..++..++..+||||+|+|.+.+.+..
T Consensus 157 gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~--~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~- 233 (293)
T COG2159 157 GVPVVIHTGAGPGGAGLEKGHSDPLYLDDVAR--KFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFA- 233 (293)
T ss_pred CCCEEEEeCCCCCCcccccCCCCchHHHHHHH--HCCCCcEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCC-
Confidence 9999999999876655555 89999999999 8999999999999 999999999999999999999999765422
Q ss_pred HHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCCC
Q 004052 303 GMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (776)
Q Consensus 303 g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (776)
...++.+.+ .+.+||||||| ||. |....+.+... .++.++ +.+++|+++||+|||+++.
T Consensus 234 --~~~~~~~~~-~~~dkilFGSD---~P~--~~~~~~l~~~~-----------~l~l~~--e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 234 --PPLLEFLKE-LGPDKILFGSD---YPA--IHPEVWLAELD-----------ELGLSE--EVKEKILGENAARLLGLDP 292 (293)
T ss_pred --hHHHHHHHh-cccCeEEecCC---CCC--cCHHHHHHHHH-----------hcCCCH--HHHHHHHHHhHHHHhCcCC
Confidence 257788888 88899999999 884 33333333222 233334 7899999999999999864
No 13
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=184.82 Aligned_cols=231 Identities=25% Similarity=0.339 Sum_probs=173.4
Q ss_pred ceeEEeeeeEEEEEeecccCCCCCc-----------cccCC---CCcccCCccccchHHHHHHHHHHHhCCCCeeeeccC
Q 004052 523 LVLNAGFEIEFYLLKSVLREGKEEW-----------VPIDF---TPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE 588 (776)
Q Consensus 523 ~~~~~g~E~EF~l~~~~~~~~~~~~-----------~p~~~---~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E 588 (776)
.-..+|.|+||||+++...+.++++ .|-.+ .+|+...+ +++..|+.++-..|.++||++..-|.|
T Consensus 214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaip-eRV~~FM~Dve~~LyaLGIpaKTrHNE 292 (724)
T COG3968 214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIP-ERVSAFMKDVEKELYALGIPAKTRHNE 292 (724)
T ss_pred hccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccH-HHHHHHHHHHHHHHHHcCCcccccccc
Confidence 3478999999999987433222221 12111 35665433 568899999999999999999999999
Q ss_pred CCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecccccCCCCCccceeeeccc-cCCccccccCCCCCCCC
Q 004052 589 AGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLW-QNGENVFMASDSSSKHG 667 (776)
Q Consensus 589 ~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpKP~~~~~GsG~HvH~Sl~-~~g~n~f~~~d~~~~~~ 667 (776)
++||||||.--+.++--|+|+-.+..+++|.+|.+||+.+-.+-|||.+.+|||-|+|+|+- ++|.|++.+.|. ..
T Consensus 293 VAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGtd~g~NLLdPgD~---Ph 369 (724)
T COG3968 293 VAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGTDDGLNLLDPGDM---PH 369 (724)
T ss_pred cCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccCcCCCCCccccccccCCCcccCCCCCC---CC
Confidence 99999999999999999999999999999999999999999999999999999999999997 578899865442 11
Q ss_pred CcHHHHHHHHHHHHHH---HHhHhhhCCCCCcccCCCCCCcCC-cc--c-------------------------------
Q 004052 668 MSSVGEKFMAGVLHHL---SSILAFTAPVPNSYDRIQPNTWSG-AY--Q------------------------------- 710 (776)
Q Consensus 668 ls~~~~~fiaGil~h~---~al~a~~~Pt~nSY~Rl~~~~~ap-~~--~------------------------------- 710 (776)
-.....-|.+.+++-. .+|+-++..+..+-.||.. .+|| .- +
T Consensus 370 dN~QFL~Fc~AvIkaVdkY~~LlRa~~a~AsNDhRLGA-NEAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg~ 448 (724)
T COG3968 370 DNKQFLLFCTAVIKAVDKYADLLRASAANASNDHRLGA-NEAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLGI 448 (724)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHHHHhccCCcccccc-CCCCcceeEeeccchHHHHHHHHhcCCCcccccCcccccch
Confidence 1222334444444332 3455555556555678864 3343 21 1
Q ss_pred --------ccccCCCCCcccccCCCCCCCCCccEEEEcCCCCC---CcHHHHHHHHHHHHHhhhhc-CC
Q 004052 711 --------CWGKENREAPLRTACPPGVKDGVVSNFELKSFDGC---ANPHLGLAAIIASGIDGLRR-LC 767 (776)
Q Consensus 711 --------~WG~~NR~a~iRi~~~~~~~~~~~~~~E~R~~d~~---aNPYL~lAailaAGl~Gi~~-l~ 767 (776)
.-|..||+.|+-.. | ++||+|.++++ +-|-.+|-+++|-.+.-|.. ++
T Consensus 449 ~vlP~v~kdAgDRNRTSPFAFT---G------NkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe 508 (724)
T COG3968 449 SVLPAVEKDAGDRNRTSPFAFT---G------NKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLE 508 (724)
T ss_pred hhccccccccccccCCCCceec---c------ceeeEecCCcccccccchHHHHHHHHHHHHHHHHHHH
Confidence 23447888888763 2 58999999887 68999999999988877766 54
No 14
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=99.78 E-value=2.2e-19 Score=190.09 Aligned_cols=204 Identities=26% Similarity=0.340 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhhccccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCC--CCC----cCCchhhhhHHHH-HHHHHH
Q 004052 151 FIETFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG--KPV----RITNKSLIDYIFI-SSLEVA 223 (776)
Q Consensus 151 ~~~al~~~l~~~~~~~vGfksv~~y~~Gl~~~~~~~~~ea~~~~~r~l~~~--~~~----~~~~~~l~d~~l~-~l~e~a 223 (776)
+-+.+.+....+++++.++.. +.+. ..+++.+++++++... ++. ........+..+. ++|+.|
T Consensus 57 ~n~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~ 126 (273)
T PF04909_consen 57 FNDWLVELAAKHPDRFIGFAA---------IPPP-DPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAA 126 (273)
T ss_dssp HHHHHHHHHHHSTTTEEEEEE---------ETTT-SHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEE---------ecCC-CchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHH
Confidence 334444555556777877765 3332 5778889999999543 111 1122334555555 999999
Q ss_pred hhCCCcEEEecC-CCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCc--hHHHHHHHHHhCCeeeecccccCCC--
Q 004052 224 QFLDLPLQIHTG-FGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDFGLAIPK-- 298 (776)
Q Consensus 224 ~e~glPvq~H~G-~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p--~~~e~~~la~~~pNVyld~s~~~~~-- 298 (776)
+++|+||.+|+| .+..+.......|..+.++++ +||+++||+.|+|.| ++.++..++..+||||+|+|+..+.
T Consensus 127 ~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~--~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~ 204 (273)
T PF04909_consen 127 EELGLPVLIHTGMTGFPDAPSDPADPEELEELLE--RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWY 204 (273)
T ss_dssp HHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHH--HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEE
T ss_pred HhhccceeeeccccchhhhhHHHHHHHHHHHHHH--HhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccc
Confidence 999999999988 222122234456778889999 899999999999999 8888999999999999999996321
Q ss_pred -ccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHH
Q 004052 299 -LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (776)
Q Consensus 299 -~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rl 377 (776)
.........+..+++..+.+||||||| ||.... .............. .++ + +..++|+++||+|+
T Consensus 205 ~~~~~~~~~~l~~~~~~~g~drilfGSD---~P~~~~--~~~~~~~~~~~~~~-----~l~--~--~~~~~i~~~NA~rl 270 (273)
T PF04909_consen 205 FWPPSFDRPFLRRAVDEFGPDRILFGSD---YPHPDG--ASPYEYIWEAYFLD-----DLS--E--EEREKILYDNARRL 270 (273)
T ss_dssp EETTHHCHHHHHHHHHHHTGGGEEEE-----TTSSTH--HHHHHHHHHHHHHH-----HSS--H--HHHHHHHTHHHHHH
T ss_pred cCcccccHHHHHHHHHHhCCceEEecCC---CCCCCc--cccHHHHHHhhhcc-----CCC--H--HHHHHHHhHhHHHH
Confidence 111233457888888888899999999 674322 11111111110000 144 2 78999999999999
Q ss_pred hCC
Q 004052 378 YKI 380 (776)
Q Consensus 378 y~l 380 (776)
|+|
T Consensus 271 ~~l 273 (273)
T PF04909_consen 271 YGL 273 (273)
T ss_dssp HTC
T ss_pred cCc
Confidence 986
No 15
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=99.46 E-value=8.2e-13 Score=140.20 Aligned_cols=140 Identities=12% Similarity=0.058 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCch---------HHHHHHHH
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF---------SKEASYLA 282 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~---------~~e~~~la 282 (776)
++..+.++++.|+++|+|+++|++... .-.+..+++ +| +++||+.|+|.|+ +.+...++
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~~~~---------l~~l~~l~~--~~-~l~ivldH~G~p~~~~~~~~~~~~~~l~~l 175 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFDAVD---------LPALLPFLQ--KL-PVAVVIDHFGRPDVTKGVDGAEFAALLKLI 175 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCHhh---------HHHHHHHHH--HC-CCCEEEECCCCCCCCCCCCCHhHHHHHHHH
Confidence 666789999999999999999997431 125677888 78 9999999999765 23444555
Q ss_pred HhCCeeeecccccCCC----ccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccch---hhHHHHHHHHHHhhhhhccC
Q 004052 283 YVYPQVYLDFGLAIPK----LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL---GAKRAREVVFSVLRDTCIDE 355 (776)
Q Consensus 283 ~~~pNVyld~s~~~~~----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~---~~~~~r~~l~~~l~~~v~~g 355 (776)
.+||||+++|++... ...+.+...++.+++. |.+|+||||| ||.+... ....+...+.. +.+
T Consensus 176 -~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~-g~dRlmfGSD---~P~~~~~~~~~~~~~~~~~~~-~~~----- 244 (263)
T cd01311 176 -EEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTD---WPHPRLREPDPMPDDGALLRL-IPS----- 244 (263)
T ss_pred -hcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHh-CCCcEEEeCC---CCCCCccccCCCCCHHHHHHH-HHH-----
Confidence 899999999986421 1133466788888877 7899999999 8864221 11122223322 112
Q ss_pred CCChhhHHHHHHHHHHHhHHHH
Q 004052 356 DLSVGEAIEVAKDIFALNAAQF 377 (776)
Q Consensus 356 ~l~~~ea~~~~~~Il~~NA~rl 377 (776)
.++. ++.+++|+++|++||
T Consensus 245 ~~~~---~~~~~~~~~~n~~~~ 263 (263)
T cd01311 245 WAPD---AQLQRKNLVDNPARL 263 (263)
T ss_pred HcCC---HHHHHHHHHhChhhC
Confidence 2332 267999999999986
No 16
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.38 E-value=7.3e-13 Score=115.11 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=65.3
Q ss_pred CceEEEEEEecCCCCcceEEecchhhhHHHhhcccccccccc-ccccccCCCCCCCCCCCCCcEEEEeecCCceeccCCC
Q 004052 407 DVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (776)
Q Consensus 407 ~i~~v~~~~~D~~G~~r~k~vp~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~P~~~ 485 (776)
+|++|+++|+|+.|.+|++++|++++.+.+.+.|++|+++++ ++.. ...+|++|+||++|++++||.+
T Consensus 1 ~V~~v~~~f~D~~G~~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~-----------~~~SDm~l~Pd~~t~~~~P~~~ 69 (84)
T PF03951_consen 1 NVKFVDLQFTDLFGRLKHVTIPASEFDEDALEDGIGFDGSSIRGFAT-----------IEESDMYLKPDPSTFFIDPWRP 69 (84)
T ss_dssp T-EEEEEEEE-TTSSEEEEEEEGCCESCSGGGS-EEEECCGTTTSSB-----------SCCEEEEEEEEGGEEEESTTTS
T ss_pred CeEEEEEEEEcCCCCcceEEEEHHHCCchHhhCCCCCCcccCcCccc-----------CCCCCEEEecCcccEEECccCC
Confidence 589999999999999999999999994444578999999887 5532 1247999999999999999996
Q ss_pred C---ceEEEEEccCC
Q 004052 486 Q---EEMIMADMHLK 497 (776)
Q Consensus 486 ~---~a~v~~d~~~~ 497 (776)
+ +++|+||++++
T Consensus 70 ~~~~~~~v~cdv~~P 84 (84)
T PF03951_consen 70 DPGKTARVICDVYDP 84 (84)
T ss_dssp TT-TEEEEEEEEEST
T ss_pred CCceEEEEEEEeECc
Confidence 4 69999999974
No 17
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.19 E-value=8.7e-10 Score=114.52 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=101.4
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCc---------hHHHHHH
Q 004052 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP---------FSKEASY 280 (776)
Q Consensus 210 ~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p---------~~~e~~~ 280 (776)
.+....+...++..+++||++.+++-.. ..| .+..++. .+|+++||+-|+|.| |...+..
T Consensus 120 ~~~a~~~r~~~~rL~~~gl~fdl~~~~~--------ql~-~~i~l~~--~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~ 188 (279)
T COG3618 120 LFEAPAWRANVERLAKLGLHFDLQVDPH--------QLP-DLIPLAL--KAPDVNFVLDHCGRPDIKINLEDPWKAALAR 188 (279)
T ss_pred chhhHHHHHHHHHHHhcCCeEEEEeChh--------hhH-HHHHHHh--hCCCCCEEeccCCCCCccccccCHHHHHHHH
Confidence 3444667778888999999999997421 112 2333444 699999999999876 2222333
Q ss_pred HHHhCCeeeecccccCCCc----cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCC
Q 004052 281 LAYVYPQVYLDFGLAIPKL----SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDED 356 (776)
Q Consensus 281 la~~~pNVyld~s~~~~~~----~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~ 356 (776)
|+ ..||||+.+|+.+.+. .....+.+.+.+++..|.+|+||||| ||-+...+. +-. +.+...++|..
T Consensus 189 la-~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSd---wPv~~l~~~--~~~-~~~~~~~~v~~-- 259 (279)
T COG3618 189 LA-RRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSD---WPVTSLESD--FAS-WVAATRELVPG-- 259 (279)
T ss_pred HH-hCCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCC---CCcccccCC--hHH-HHHHHHHHcCC--
Confidence 44 7899999999965322 24456778999999999999999999 897765441 111 12233344321
Q ss_pred CChhhHHHHHHHHHHHhHHHHhCC
Q 004052 357 LSVGEAIEVAKDIFALNAAQFYKI 380 (776)
Q Consensus 357 l~~~ea~~~~~~Il~~NA~rly~l 380 (776)
+ . +.+++|+++||+|+|++
T Consensus 260 -~--~--~er~~i~~~NA~rly~~ 278 (279)
T COG3618 260 -D--A--AERARILVDNARRLYRL 278 (279)
T ss_pred -C--H--HHHHHHHhhCHHHHhCC
Confidence 2 2 67999999999999986
No 18
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.01 E-value=1.8e-09 Score=113.26 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCC-CcEEEEeCCCCchHHHHHHHHHhCCee
Q 004052 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFS-KCRFVLLHASYPFSKEASYLAYVYPQV 288 (776)
Q Consensus 210 ~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P-~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (776)
..++..+.+++++|+++|+||++|++.+ +..+.++++ +|| ..++|+ |+.......+..+.. +|+
T Consensus 104 ~~q~~~~~~~~~~a~e~~~pv~iH~~~~----------~~~~~~l~~--~~~~~~~~i~-H~~~~~~~~~~~~~~--~g~ 168 (251)
T cd01310 104 EVQKEVFRAQLELAKELNLPVVIHSRDA----------HEDVLEILK--EYGPPKRGVF-HCFSGSAEEAKELLD--LGF 168 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeCc----------hHHHHHHHH--hcCCCCCEEE-EccCCCHHHHHHHHH--cCC
Confidence 3466788999999999999999999842 556778888 787 555554 663232333334443 899
Q ss_pred eecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHH
Q 004052 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (776)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (776)
|+++|.+..... ...++.+++.++.+||||+||++..+...+.+.......+.+++..+.+...++. +.+.+
T Consensus 169 ~~~~~~~~~~~~----~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~----e~~~~ 240 (251)
T cd01310 169 YISISGIVTFKN----ANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISV----EEVAE 240 (251)
T ss_pred EEEeeeeeccCC----CHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCH----HHHHH
Confidence 999998753211 2356778889999999999995433211000000011112222222222234553 67999
Q ss_pred HHHHhHHHHhC
Q 004052 369 IFALNAAQFYK 379 (776)
Q Consensus 369 Il~~NA~rly~ 379 (776)
|+++||+|+|+
T Consensus 241 ~~~~N~~~ll~ 251 (251)
T cd01310 241 VTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
No 19
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.93 E-value=3.2e-09 Score=102.97 Aligned_cols=199 Identities=20% Similarity=0.275 Sum_probs=131.7
Q ss_pred HHHHHHHhhccccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCC------CCCcCCchhhhhHHHHHHHHHHhhCC
Q 004052 154 TFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG------KPVRITNKSLIDYIFISSLEVAQFLD 227 (776)
Q Consensus 154 al~~~l~~~~~~~vGfksv~~y~~Gl~~~~~~~~~ea~~~~~r~l~~~------~~~~~~~~~l~d~~l~~l~e~a~e~g 227 (776)
-|......+|+|+||+.+ ++ .-.++.|.++++||+++. .+.++..+.|+..-++|+|..|+++.
T Consensus 55 dl~ae~~kfp~r~v~lgt---------lp-mn~~e~avee~~rcvk~lg~~g~eigshv~e~~ld~~d~~ply~~~e~l~ 124 (297)
T KOG4245|consen 55 DLAAECQKFPDRFVGLGT---------LP-MNAPELAVEEMERCVKELGFKGFEIGSHVAEKDLDAQDFFPLYAAAEELK 124 (297)
T ss_pred HHHHHHHhcchhccccCc---------cC-CcCHHHHHHHHHHHHHHcCCCceeeccccccccCchHHHhHHHHHHHhhe
Confidence 455666778999998876 33 447889999999999753 24688889999999999999999999
Q ss_pred CcEEEecCCC---CCCC-----CcCCcCh---------hhhHHHHHhcCCCCcEEEEeCCC--CchHHHHH--------H
Q 004052 228 LPLQIHTGFG---DKDL-----DLRLSNP---------LHLRAILEDKRFSKCRFVLLHAS--YPFSKEAS--------Y 280 (776)
Q Consensus 228 lPvq~H~G~g---d~~~-----~~~~~~P---------~~L~~l~~~~~~P~l~ivl~H~g--~p~~~e~~--------~ 280 (776)
..+.+|+.-- |.-. ..-...| +.+.+++. .||++|+..+|.| ||+.+... .
T Consensus 125 ~~lfvhpwdmhmwdgrl~kywlpwlvgmpaeta~aics~img~i~~--~fpklklcfahggga~p~~~grishg~n~rpd 202 (297)
T KOG4245|consen 125 CSLFVHPWDMHMWDGRLAKYWLPWLVGMPAETAIAICSMIMGGIFE--KFPKLKLCFAHGGGAFPFIRGRISHGFNMRPD 202 (297)
T ss_pred eeEEecchhhcccccchHhhhhHHHhCCchHHHHHHHHHHHhhHHH--hCchheeeeecCCcccceeeeeeccCccCCcc
Confidence 9999998531 1100 0001122 35678888 8999999999985 77765221 1
Q ss_pred HH----HhCCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCC
Q 004052 281 LA----YVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDED 356 (776)
Q Consensus 281 la----~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~ 356 (776)
|+ ..-||-|.++=|.-...+ -...++-+++.+|-++|+.||| |+|| ++...-- +++.++ .+
T Consensus 203 lca~~~~~~p~k~~g~~~tdalvh---dp~alell~~tigkd~iilgtd-ypfp----lgele~g----kliee~---~~ 267 (297)
T KOG4245|consen 203 LCAGDCKMAPKKLDGLFWTDALVH---DPKALELLIDTIGKDHIILGTD-YPFP----LGELEPG----KLIEEM---EE 267 (297)
T ss_pred hhcCcCCCChhhhccchhhhhhhc---CcHHHHHHHHhhccceEEeccC-CCCc----Ccccccc----hHHHhh---cc
Confidence 11 122455554433211111 1346788889999999999999 3344 2221111 222222 23
Q ss_pred CChhhHHHHHHHHHHHhHHHHhCCCCC
Q 004052 357 LSVGEAIEVAKDIFALNAAQFYKINLG 383 (776)
Q Consensus 357 l~~~ea~~~~~~Il~~NA~rly~l~~~ 383 (776)
++. +.++++..+||..+++|+..
T Consensus 268 f~a----~~ke~l~~~nal~~l~id~n 290 (297)
T KOG4245|consen 268 FDA----EDKEDLKAGNALAFLDIDEN 290 (297)
T ss_pred cch----hhHHHhhhccchhhcccchh
Confidence 432 67999999999999998754
No 20
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.71 E-value=2.9e-07 Score=96.66 Aligned_cols=143 Identities=19% Similarity=0.189 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (776)
+...+.+.++.|+++|+||.+|++. .+..+.++++ ++|....++.|+.......+..+.. .|+|++
T Consensus 106 q~~~~~~~~~~a~~~~~pv~iH~~~----------~~~~~~~~l~--~~~~~~~~i~H~~~~~~~~~~~~~~--~g~~~~ 171 (252)
T TIGR00010 106 QEEVFRAQLQLAEELNLPVIIHARD----------AEEDVLDILR--EEKPKVGGVLHCFTGDAELAKKLLD--LGFYIS 171 (252)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecC----------ccHHHHHHHH--hcCCCCCEEEEccCCCHHHHHHHHH--CCCeEe
Confidence 4578899999999999999999973 2333556676 5643445555873111122222222 499999
Q ss_pred ccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccch----hhHHHHHHHHHHhhhhhccCCCChhhHHHHHH
Q 004052 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL----GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (776)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~----~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~ 367 (776)
++.+..... ...++++++..|.+|+||+||++..+...+. .....++.+. .+.. ...++. +.+.
T Consensus 172 ~~~~~~~~~----~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~-~~a~---~~g~~~----~~~~ 239 (252)
T TIGR00010 172 ISGIVTFKN----AKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVE-AIAE---IKGMDV----EELA 239 (252)
T ss_pred eceeEecCC----cHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHH-HHHH---HhCcCH----HHHH
Confidence 997543211 1356677778899999999996432100000 0112222221 1111 124553 6799
Q ss_pred HHHHHhHHHHhCC
Q 004052 368 DIFALNAAQFYKI 380 (776)
Q Consensus 368 ~Il~~NA~rly~l 380 (776)
+++++|++|+|+|
T Consensus 240 ~~~~~N~~~~~~~ 252 (252)
T TIGR00010 240 QITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999985
No 21
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.37 E-value=1.1e-05 Score=86.68 Aligned_cols=199 Identities=24% Similarity=0.310 Sum_probs=121.7
Q ss_pred EEeeeeEEEEEeecccCCCCCccccCCCCcccCCccccch-HHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccc-hH
Q 004052 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVS-PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VA 603 (776)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~~ 603 (776)
.+|+|.||+|+++. ++.+. .... .++.++... .| ..+++|...+|.||+..|+ +.
T Consensus 1 t~GvE~E~~lvD~~------t~~~~-----------~~~~~~~l~~~~~~---~~---~~~~~El~~~qiEi~t~p~~~~ 57 (287)
T TIGR02050 1 TLGVEEELLLVDPH------TYDLA-----------ASASAVLIGACREK---IG---AGFKHELFESQVELATPVCTTL 57 (287)
T ss_pred CceeeeeeeeEcCC------ccCcC-----------ccChHHHHHhhhhh---cc---cccChhhhccEEEecCCCcCCH
Confidence 37999999999872 11111 0112 444433322 22 3488999999999999997 57
Q ss_pred HHhhhHHHHHHHHHHHHHHHcCCeeE---ecccccC-----------------------CCCCccceeeeccccCCcccc
Q 004052 604 AKAADNLIFTREVLRAVARKHGLLAT---FVPKFAL-----------------------DDIGSGSHVHLSLWQNGENVF 657 (776)
Q Consensus 604 l~aaD~~~~~r~~ik~vA~~~G~~aT---FmpKP~~-----------------------~~~GsG~HvH~Sl~~~g~n~f 657 (776)
-++.+.+...+..++++|+++|+... ++|.... ...-+|+|||+++-+.+
T Consensus 58 ~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d~~---- 133 (287)
T TIGR02050 58 AEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPSPD---- 133 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCCHH----
Confidence 77899999999999999999998743 3443211 11247899999985311
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCC---------CcccCCC----CCCcC-Ccccccc----------
Q 004052 658 MASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP---------NSYDRIQ----PNTWS-GAYQCWG---------- 713 (776)
Q Consensus 658 ~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~---------nSY~Rl~----~~~~a-p~~~~WG---------- 713 (776)
..-..+-.+...+|.+.|+++.++ .|||... |..-- |..-+|.
T Consensus 134 -------------~~i~~~n~l~~~lP~llALsANSPf~~G~dtg~~s~R~~i~~~~p~~G~p~~f~~~~~y~~~~~~l~ 200 (287)
T TIGR02050 134 -------------DAVAVLNRLLPWLPHLLALSASSPFWQGFDTGYASYRRNIFQAWPTAGLPPAFGSWDAFEAYFADLL 200 (287)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhCCccccCcCCchHHHHHHHHHhCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 133445567777788888777554 2333111 11111 1333442
Q ss_pred ----cCCCCCc---ccccCCCCCCCCCccEEEEcCCCCCCcH--HHHHHHHHHHHHhhhhc-CCCCCC
Q 004052 714 ----KENREAP---LRTACPPGVKDGVVSNFELKSFDGCANP--HLGLAAIIASGIDGLRR-LCLPEP 771 (776)
Q Consensus 714 ----~~NR~a~---iRi~~~~~~~~~~~~~~E~R~~d~~aNP--YL~lAailaAGl~Gi~~-l~~p~p 771 (776)
..++... ||. .+ . -.++|+|++|+..++ .+++||++.|-...+-. .+.+.|
T Consensus 201 ~~g~i~~~~~iww~vRp-~~-~-----~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv~~~~~~~~~~~~ 261 (287)
T TIGR02050 201 ETGVIDDDGDLWWDIRP-SP-H-----FGTVEVRVADTCLNLEHAVAIAALIRALVEWLLREWPAPFP 261 (287)
T ss_pred HcCCcCCCCeeEEEecc-CC-C-----CCCeeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHhHhcCCC
Confidence 1222222 552 21 1 248999999987654 67778888777777666 444444
No 22
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.25 E-value=2.5e-05 Score=87.21 Aligned_cols=132 Identities=25% Similarity=0.260 Sum_probs=91.5
Q ss_pred eeEEeeeeEEEEEeecccCCCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccc-h
Q 004052 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (776)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (776)
.+.+|+|.||+++++. ++ .+ .+..+++++.+.... .-..+..|-..+|.||+..|+ +
T Consensus 10 ~~tiGvE~E~~lVD~~--t~----~~---------------~~~~~~vl~~~~~~~-~~~~i~~El~~~qiEi~t~p~~~ 67 (373)
T PRK13517 10 RPTLGVEWELLLVDPE--TG----EL---------------SPRAAEVLAAAGEDD-EGPHLQKELLRNTVEVVTGVCDT 67 (373)
T ss_pred CCeeEeeeeEeeECCC--cC----Cc---------------CccHHHHHHhccccc-CCCcccccccCCEEEECCCCCCC
Confidence 4599999999999861 11 11 112334444444211 124677899999999999997 5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHcCCeeE---ecccccCC-----------------------CCCccceeeeccccCCccc
Q 004052 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPKFALD-----------------------DIGSGSHVHLSLWQNGENV 656 (776)
Q Consensus 603 ~l~aaD~~~~~r~~ik~vA~~~G~~aT---FmpKP~~~-----------------------~~GsG~HvH~Sl~~~g~n~ 656 (776)
.-++.+.+...+..++++|+++|+... .+|..... ..-+|+|||+++-+.+
T Consensus 68 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~~~--- 144 (373)
T PRK13517 68 VAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPSRE--- 144 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCCHH---
Confidence 777899999999999999999997643 34442111 1357899999985311
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCC
Q 004052 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (776)
Q Consensus 657 f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~ 694 (776)
.+-.++..+...+|.+.|+++.++
T Consensus 145 --------------~~i~~~n~l~~~lP~llALsAnSP 168 (373)
T PRK13517 145 --------------KVVPVINRLRPWLPHLLALSANSP 168 (373)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 244566778888899999887665
No 23
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.07 E-value=7.4e-05 Score=83.36 Aligned_cols=190 Identities=21% Similarity=0.243 Sum_probs=118.7
Q ss_pred eeEEeeeeEEEEEeecccCCCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccc-h
Q 004052 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (776)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (776)
.+.+|+|.||+++++. ++ .+. ... .+++..+... .-..+.+|-.-+|.||+..|+ +
T Consensus 5 ~~t~GvE~E~~lVD~~--t~----~l~-----------~~~----~~~l~~~~~~--~~~~i~~El~~~qiEi~T~p~~~ 61 (371)
T PRK13515 5 EFTLGIEEEYLLVDPE--TR----DLR-----------SYP----DALVEACRDT--LGEQVKPEMHQSQVEVGTPVCAT 61 (371)
T ss_pred CCcceEeEeEEEecCC--cc----ccc-----------ccH----HHHHHhchhh--cCCccCcchhccEEEECCcccCC
Confidence 4689999999999872 11 111 001 2333333331 123688899999999999997 4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHcCCeeE---ecccccC-----------------------CCCCccceeeeccccCCccc
Q 004052 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPKFAL-----------------------DDIGSGSHVHLSLWQNGENV 656 (776)
Q Consensus 603 ~l~aaD~~~~~r~~ik~vA~~~G~~aT---FmpKP~~-----------------------~~~GsG~HvH~Sl~~~g~n~ 656 (776)
.-++.+.+...+..+.++|+++|+... .+|.... ...-+|+|||+++-+.
T Consensus 62 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d~---- 137 (371)
T PRK13515 62 IAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPDR---- 137 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCCH----
Confidence 666889999999999999999999863 3443110 0123689999998431
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCCCcccCCCCCC---cCC-cccccccCCCCC-------------
Q 004052 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNT---WSG-AYQCWGKENREA------------- 719 (776)
Q Consensus 657 f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~nSY~Rl~~~~---~ap-~~~~WG~~NR~a------------- 719 (776)
+..-.++..+.-.+|-+.|+++-++ | ..|. |+. ....|+.=+|.-
T Consensus 138 -------------e~~~~~~n~~~~~lP~llALsanSP--f---~~G~dtg~~S~R~~~~~~~p~~g~p~~~~~~~~y~~ 199 (371)
T PRK13515 138 -------------EDRIDLMNQVRYFLPHLLALSTSSP--F---WGGRDTGLKSYRSAVFDEFPRTGLPPAFPSWAEYQR 199 (371)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHcCCc--c---ccCCCCchhhhHHHHHhhCCCCCCCCCCCCHHHHHH
Confidence 1245566677778888888876443 1 1111 111 123344333321
Q ss_pred -------------------cccccCCCCCCCCCccEEEEcCCCCCCcHH--HHHHHHHHHHHhhhhc
Q 004052 720 -------------------PLRTACPPGVKDGVVSNFELKSFDGCANPH--LGLAAIIASGIDGLRR 765 (776)
Q Consensus 720 -------------------~iRi~~~~~~~~~~~~~~E~R~~d~~aNPY--L~lAailaAGl~Gi~~ 765 (776)
.+|. . ..-.++|+|.+|...+.- +++||++.+-+..+..
T Consensus 200 ~~~~l~~~g~i~~~~~~~~~vRp-~------~~~~tiEiRv~D~~p~~~~~~a~aal~~~lv~~l~~ 259 (371)
T PRK13515 200 YVALLVKTGCIDDAKKIWWDLRP-S------PRFPTLELRICDVCTRLDDALALAALFQALVRKLYR 259 (371)
T ss_pred HHHHHHhcCCcCCCCeEEEEecc-C------CCCCCeeEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1231 1 112479999999876666 7788888887777754
No 24
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.99 E-value=0.00015 Score=76.89 Aligned_cols=140 Identities=18% Similarity=0.247 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCeeeecc
Q 004052 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDF 292 (776)
Q Consensus 214 ~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~-g~p~~~e~~~la~~~pNVyld~ 292 (776)
..|...+++|.++++||++|+--. . -.+-.+++....+ .+ ++.|+ +.+ ...+..+.. -+.|+.+
T Consensus 114 ~vf~~ql~lA~~~~~Pv~iH~r~a---------~-~~~~~il~~~~~~-~~-~i~H~fsG~-~~~a~~~l~--~G~~iS~ 178 (258)
T PRK11449 114 WLLDEQLKLAKRYDLPVILHSRRT---------H-DKLAMHLKRHDLP-RT-GVVHGFSGS-LQQAERFVQ--LGYKIGV 178 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCc---------c-HHHHHHHHhcCCC-CC-eEEEcCCCC-HHHHHHHHH--CCCEEEe
Confidence 456667899999999999998421 1 1233455521112 23 35777 222 222333332 3688988
Q ss_pred cccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchh----hHHHHHHHHHHhhhhhccCCCChhhHHHHHHH
Q 004052 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (776)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (776)
++++.+-. ...+++++...|.+|||+.||++..|...+.+ ..+..+.+.. +.+. -.++. +.+.+
T Consensus 179 ~g~it~~~----~~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~-ia~l---~~~~~----~el~~ 246 (258)
T PRK11449 179 GGTITYPR----ASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDV-LCEL---RPEPA----DEIAE 246 (258)
T ss_pred CccccccC----cHHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHH-HHHH---HCcCH----HHHHH
Confidence 88764321 23578889999999999999976544211111 1122333321 1221 23443 56888
Q ss_pred HHHHhHHHHhCC
Q 004052 369 IFALNAAQFYKI 380 (776)
Q Consensus 369 Il~~NA~rly~l 380 (776)
++++|+.|+|++
T Consensus 247 ~~~~N~~~lf~~ 258 (258)
T PRK11449 247 VLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHhCc
Confidence 999999999985
No 25
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=97.95 E-value=6.8e-05 Score=83.32 Aligned_cols=131 Identities=20% Similarity=0.193 Sum_probs=86.2
Q ss_pred eeEEeeeeEEEEEeecccCCCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccc-h
Q 004052 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (776)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (776)
.+.+|+|.||+|+++. ++ .+. +..+++++.+..... -+.+.+|-..+|.|++..|+ +
T Consensus 11 ~~t~GvE~E~~LVD~~--t~----~~~---------------~~~~~vl~~~~~~~~-~~~v~~El~~~qIEi~T~p~~~ 68 (373)
T PRK13516 11 PFTLGVELELQLVNPH--DY----DLT---------------QDSSDLLRAVKNQPT-AGEIKPEITESMIEIATGVCRD 68 (373)
T ss_pred CCeeEEEEEEEeEcCC--Cc----CcC---------------ccHHHHHHhcccccc-ccccChhhhCceEEEcCCCCCC
Confidence 4599999999999872 11 111 112233333332111 22578899999999999998 5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHcCCeeE---ecc-----------cc----------cCC--CCCccceeeeccccCCccc
Q 004052 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVP-----------KF----------ALD--DIGSGSHVHLSLWQNGENV 656 (776)
Q Consensus 603 ~l~aaD~~~~~r~~ik~vA~~~G~~aT---Fmp-----------KP----------~~~--~~GsG~HvH~Sl~~~g~n~ 656 (776)
.-++.+.+...+..+++.|+++|+... .+| || ... ..-.|+|||+.+-+.
T Consensus 69 ~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d~---- 144 (373)
T PRK13516 69 IDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPSG---- 144 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCCH----
Confidence 667889999999999999999999742 222 22 000 024589999986321
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCC
Q 004052 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPV 693 (776)
Q Consensus 657 f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt 693 (776)
+.+-.-+-.+..++|.+.|+++.+
T Consensus 145 -------------~~av~~~~~l~~~lP~llALsAsS 168 (373)
T PRK13516 145 -------------DDALYLLHGLSRYVPHFIALSASS 168 (373)
T ss_pred -------------HHHHHHHHHHHhHhHHHHHHHhCC
Confidence 124455666777788888888765
No 26
>PRK10812 putative DNAse; Provisional
Probab=97.92 E-value=8.6e-05 Score=78.90 Aligned_cols=143 Identities=20% Similarity=0.263 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeeccc
Q 004052 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFG 293 (776)
Q Consensus 214 ~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s 293 (776)
..|...+++|.++|+||.+|+--+ .. .+-++++....+..++| .|+-..-...+..+.. .++|++++
T Consensus 111 ~vf~~ql~lA~e~~~Pv~iH~r~a---------~~-~~l~iL~~~~~~~~~~v-~H~fsG~~~~a~~~~~--~G~~is~~ 177 (265)
T PRK10812 111 ESFRHHIQIGRELNKPVIVHTRDA---------RA-DTLAILREEKVTDCGGV-LHCFTEDRETAGKLLD--LGFYISFS 177 (265)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCc---------hH-HHHHHHHhhcCCCCCEE-EEeecCCHHHHHHHHH--CCCEEEEC
Confidence 455666889999999999998532 12 23344452122333555 6882111122223332 37899988
Q ss_pred ccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchh----hHHHHHHHHHHhhhhhccCCCChhhHHHHHHHH
Q 004052 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (776)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (776)
+...+- -...++++++.+|.+|+|..||+++.+...+.+ ..+...++ +.+++. ..++. +.+..+
T Consensus 178 g~~t~~----~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~-~~ia~l---~g~~~----eei~~~ 245 (265)
T PRK10812 178 GIVTFR----NAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVA-EYMAVL---KGVSV----EELAQV 245 (265)
T ss_pred eeeecC----ccHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHH-HHHHHH---hCCCH----HHHHHH
Confidence 765321 124678899999999999999976532111111 11222222 222222 24554 568999
Q ss_pred HHHhHHHHhCCC
Q 004052 370 FALNAAQFYKIN 381 (776)
Q Consensus 370 l~~NA~rly~l~ 381 (776)
+++|++|+|+++
T Consensus 246 ~~~N~~~lf~~~ 257 (265)
T PRK10812 246 TTDNFARLFHID 257 (265)
T ss_pred HHHHHHHHHCCC
Confidence 999999999984
No 27
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.85 E-value=0.00029 Score=75.95 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCC-CchHHHHHHHHHhCCeeeeccc
Q 004052 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFG 293 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g-~p~~~e~~~la~~~pNVyld~s 293 (776)
.|....+++.++|+||.+|++.+. .+....+. ++++..++..++++.|+. ..-...+..++. .++|++++
T Consensus 137 ~f~~~~~lA~~~~~Pv~iH~~~~~------~~~~~~l~-~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~--~G~~i~~~ 207 (293)
T cd00530 137 VLRAAARAQKETGVPISTHTQAGL------TMGLEQLR-ILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA--LGAYLEFD 207 (293)
T ss_pred HHHHHHHHHHHHCCeEEEcCCCCc------cccHHHHH-HHHHcCCChhheEEeCCCCCCCHHHHHHHHh--CCCEEEeC
Confidence 455667889999999999997431 01111233 333224565678999994 222233333333 26887777
Q ss_pred ccCCC-----ccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--cchh--hHHHHHHHHHHhhhhhccCCCChhhHHH
Q 004052 294 LAIPK-----LSVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLG--AKRAREVVFSVLRDTCIDEDLSVGEAIE 364 (776)
Q Consensus 294 ~~~~~-----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~--~~~~--~~~~r~~l~~~l~~~v~~g~l~~~ea~~ 364 (776)
..... .........++++++.++.+|||++||++..+.. .+.+ ..+... .+....+...++. +
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~----e 279 (293)
T cd00530 208 GIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILT----RFIPRLRERGVTE----E 279 (293)
T ss_pred CCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHH----HHHHHHHHcCCCH----H
Confidence 54321 0111234578999999999999999997543210 0111 111111 1122222334553 5
Q ss_pred HHHHHHHHhHHHHh
Q 004052 365 VAKDIFALNAAQFY 378 (776)
Q Consensus 365 ~~~~Il~~NA~rly 378 (776)
.+.+++.+|++|+|
T Consensus 280 ~i~~~~~~N~~~lf 293 (293)
T cd00530 280 QLDTILVENPARFL 293 (293)
T ss_pred HHHHHHHHCHHHhC
Confidence 79999999999987
No 28
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00023 Score=74.83 Aligned_cols=142 Identities=23% Similarity=0.261 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCch-HHHHHHHHHhCCeeee
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF-SKEASYLAYVYPQVYL 290 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~-~~e~~~la~~~pNVyl 290 (776)
+...|..-+++|.++++||.+|+--. -..+-++++ +++..+=.++|| |.- ..++..+. .. ..|+
T Consensus 110 Q~~~F~~ql~lA~~~~lPviIH~R~A----------~~d~~~iL~--~~~~~~~gi~Hc-FsGs~e~a~~~~-d~-G~yi 174 (256)
T COG0084 110 QEEVFEAQLELAKELNLPVIIHTRDA----------HEDTLEILK--EEGAPVGGVLHC-FSGSAEEARKLL-DL-GFYI 174 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcccc----------HHHHHHHHH--hcCCCCCEEEEc-cCCCHHHHHHHH-Hc-CeEE
Confidence 33456666899999999999998532 112445666 454334445787 221 12222222 22 4999
Q ss_pred cccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchh----hHHHHHHHHHHhhhhhccCCCChhhHHHHH
Q 004052 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (776)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~ 366 (776)
.+|++..+-. ...+++++...|.+|+|.-||++..+...+.+ ..+.+.+ .+.++++- .++. +.+
T Consensus 175 sisG~itfk~----a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v-~~~iAelk---~~~~----eev 242 (256)
T COG0084 175 SISGIVTFKN----AEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHV-AEKLAELK---GISA----EEV 242 (256)
T ss_pred EECceeecCC----cHHHHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHH-HHHHHHHh---CCCH----HHH
Confidence 9999986531 24688999999999999999987653322332 2233333 34444442 4554 568
Q ss_pred HHHHHHhHHHHhCC
Q 004052 367 KDIFALNAAQFYKI 380 (776)
Q Consensus 367 ~~Il~~NA~rly~l 380 (776)
..+...|++|||++
T Consensus 243 a~~t~~N~~~lf~~ 256 (256)
T COG0084 243 AEITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999985
No 29
>PRK13518 carboxylate-amine ligase; Provisional
Probab=97.61 E-value=0.001 Score=73.27 Aligned_cols=130 Identities=22% Similarity=0.198 Sum_probs=86.1
Q ss_pred eEEeeeeEEEEEeecccCCCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccc-hH
Q 004052 525 LNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VA 603 (776)
Q Consensus 525 ~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~~ 603 (776)
-.+|+|.||.|.++. +. +. ....++++..+..... -+.+++|-..+|.||+..++ +.
T Consensus 13 ~TlGvEeE~~lvD~~---~~----~~--------------~~~~~~vl~~~~~~~~-~~~~~~El~~~qvEi~T~~~~~~ 70 (357)
T PRK13518 13 GTLGIEEEFFVVDEY---GR----PT--------------SGTDELVYEHEPPEIL-AGRLDHELFKFVIETQTPLIEDP 70 (357)
T ss_pred CceEEEEEEEEECCC---CC----cc--------------cchhHHHHHhcccccC-CCcccccccCceEEEcCcCcCCH
Confidence 389999999999872 11 10 0111334343333111 24688999999999999997 67
Q ss_pred HHhhhHHHHHHHHHHHHHHHcCCee--------------EecccccC-------C----C-CCccceeeeccccCCcccc
Q 004052 604 AKAADNLIFTREVLRAVARKHGLLA--------------TFVPKFAL-------D----D-IGSGSHVHLSLWQNGENVF 657 (776)
Q Consensus 604 l~aaD~~~~~r~~ik~vA~~~G~~a--------------TFmpKP~~-------~----~-~GsG~HvH~Sl~~~g~n~f 657 (776)
-++.+++...|..+..+|.++|+.. ..+|||.- + . .-.|+|||+.+-+.+
T Consensus 71 ~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~G~HVHVg~~d~d---- 146 (357)
T PRK13518 71 SEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHVHVGVDDAD---- 146 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccchhcceeeEEEEEeCCCCHH----
Confidence 8899999999999999999999963 23345420 1 1 236899999873211
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCC
Q 004052 658 MASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPV 693 (776)
Q Consensus 658 ~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt 693 (776)
..-..+-.+.-.+|.+.|+++.+
T Consensus 147 -------------~av~v~n~lr~~LP~LlALsAnS 169 (357)
T PRK13518 147 -------------KAVWIANELRWHLPILLALSANS 169 (357)
T ss_pred -------------HHHHHHHHHHhHHHHHHHHHcCC
Confidence 12222345556778999888755
No 30
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.59 E-value=0.00034 Score=74.02 Aligned_cols=143 Identities=24% Similarity=0.330 Sum_probs=81.5
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCee
Q 004052 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQV 288 (776)
Q Consensus 210 ~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~-g~p~~~e~~~la~~~pNV 288 (776)
......|...+++|.++++||++|+-- +.. .+-++++....|+. -++.|+ +.+. .++..+.. .++
T Consensus 107 ~~Q~~vF~~ql~lA~~~~~pv~iH~r~---------a~~-~~l~il~~~~~~~~-~~i~H~f~g~~-~~~~~~~~--~g~ 172 (255)
T PF01026_consen 107 EVQEEVFERQLELAKELNLPVSIHCRK---------AHE-ELLEILKEYGPPNL-RVIFHCFSGSP-EEAKKFLD--LGC 172 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEES---------HHH-HHHHHHHHTTGGTS-EEEETT--S-H-HHHHHHHH--TTE
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEecCC---------cHH-HHHHHHHhccccce-eEEEecCCCCH-HHHHHHHh--cCc
Confidence 334456777789999999999999852 122 23445553233344 455676 2222 22222222 289
Q ss_pred eecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCC-ccccch----hhHHHHHHHHHHhhhhhccCCCChhhHH
Q 004052 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFL----GAKRAREVVFSVLRDTCIDEDLSVGEAI 363 (776)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~~----~~~~~r~~l~~~l~~~v~~g~l~~~ea~ 363 (776)
|+.++.....-. ....++++...|.+|||.-||++.. |. .+. ......+.+. .+++ -..++.
T Consensus 173 ~~S~~~~~~~~~----~~~~~~~~~~ip~drillETD~P~~~~~-~~~~~~~~p~~i~~~~~-~la~---~~~~~~---- 239 (255)
T PF01026_consen 173 YFSFSGAITFKN----SKKVRELIKAIPLDRILLETDAPYLAPD-PYRGKPNEPSNIPKVAQ-ALAE---IKGISL---- 239 (255)
T ss_dssp EEEEEGGGGSTT----SHHHHHHHHHS-GGGEEEE-BTTSSECT-TSTTSE--GGGHHHHHH-HHHH---HHTSTH----
T ss_pred eEEecccccccc----cHHHHHHHhcCChhhEEEcCCCCcCCcc-ccCCCCCChHHHHHHHH-HHHH---HcCCCH----
Confidence 999998754321 2347788899999999999996431 10 000 1111222221 1222 124664
Q ss_pred HHHHHHHHHhHHHHhC
Q 004052 364 EVAKDIFALNAAQFYK 379 (776)
Q Consensus 364 ~~~~~Il~~NA~rly~ 379 (776)
+.+..+.++|++|+|+
T Consensus 240 e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 240 EELAQIIYENAKRLFG 255 (255)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6799999999999996
No 31
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0025 Score=66.90 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhh----hHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-eee
Q 004052 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLH----LRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QVY 289 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~----L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p-NVy 289 (776)
.+.|++|..++.|+|+.+|--..+...|.......+ |+.+.+ +||++|||+-|... .+++.+..... ||+
T Consensus 119 ~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~--~fP~LKIV~EHiTT---~dav~~v~~~~~nla 193 (344)
T COG0418 119 KIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQ--RFPKLKIVLEHITT---KDAVEYVKDANNNLA 193 (344)
T ss_pred HHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHh--hCCcceEEEEEecc---HHHHHHHHhcCccee
Confidence 568999999999999999977665555543334444 555556 89999999999953 34444444443 476
Q ss_pred ecccc---------cC-----CCc------cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccc----------chhhHH
Q 004052 290 LDFGL---------AI-----PKL------SVQGMISSIKELLELAPTKKVMFSTDAYASPETY----------FLGAKR 339 (776)
Q Consensus 290 ld~s~---------~~-----~~~------~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~----------~~~~~~ 339 (776)
..+.. |+ |.+ -+.--+..|+++. ..|..|+.|||||-+++... |. +..
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa-~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fs-ap~ 271 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAA-TSGHPKFFLGTDSAPHARSRKESACGCAGIFS-APF 271 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHH-hcCCCcEEecCCCCCCcccccccccccccccc-cHh
Confidence 65542 11 111 0111122344433 35567999999987655321 00 001
Q ss_pred HHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCCC
Q 004052 340 AREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (776)
Q Consensus 340 ~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (776)
.-..++.++.+. + |.+-.+..+..|..++|+|..
T Consensus 272 al~~~AevFE~~---n------aL~~LeaF~S~nGp~fY~lp~ 305 (344)
T COG0418 272 ALPLYAEVFEEE---N------ALDNLEAFASDNGPKFYGLPR 305 (344)
T ss_pred HHHHHHHHHHHh---c------HHHHHHHHHhhcCcceecccC
Confidence 112233333221 1 447899999999999999973
No 32
>PRK09875 putative hydrolase; Provisional
Probab=97.22 E-value=0.012 Score=63.39 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=84.1
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHH-HHHHHHHhCCeeeeccccc
Q 004052 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSK-EASYLAYVYPQVYLDFGLA 295 (776)
Q Consensus 217 ~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~-e~~~la~~~pNVyld~s~~ 295 (776)
....++..+.|.||.+|++.+.. -...+ +++++...+--++|+.|+...... ....++..=-.|-+|+=+.
T Consensus 142 ~Aaa~a~~~TG~pi~~Ht~~~~~-------g~e~l-~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~ 213 (292)
T PRK09875 142 IAAALAHNQTGRPISTHTSFSTM-------GLEQL-ALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK 213 (292)
T ss_pred HHHHHHHHHHCCcEEEcCCCccc-------hHHHH-HHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCC
Confidence 33455677899999999986531 12234 455543455569999999533222 2233443212344443222
Q ss_pred CCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCC-ccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhH
Q 004052 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNA 374 (776)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA 374 (776)
-..++.....+.+..+++.+=.+|||.|+|...- +...|.+ .-+..++.+++..+.+.| ++ + +.+++|+.+|.
T Consensus 214 ~~~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg-~G~~~i~~~~ip~L~~~G-vs--e--~~I~~m~~~NP 287 (292)
T PRK09875 214 NSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGG-YGYDYLLTTFIPQLRQSG-FS--Q--ADVDVMLRENP 287 (292)
T ss_pred cccCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCC-CChhHHHHHHHHHHHHcC-CC--H--HHHHHHHHHCH
Confidence 1112222334567777776657999999995211 1111111 123344555555555554 55 3 78999999999
Q ss_pred HHHhC
Q 004052 375 AQFYK 379 (776)
Q Consensus 375 ~rly~ 379 (776)
+|+|.
T Consensus 288 ~r~~~ 292 (292)
T PRK09875 288 SQFFQ 292 (292)
T ss_pred HHHhC
Confidence 99984
No 33
>PRK10425 DNase TatD; Provisional
Probab=97.20 E-value=0.0034 Score=66.51 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCeeeecc
Q 004052 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDF 292 (776)
Q Consensus 214 ~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~-g~p~~~e~~~la~~~pNVyld~ 292 (776)
..|...+++|.++++||.+|+--. . ..+-++++. ..|+.+=++.|+ +.+ ..++..+.. .+.|+.+
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a---------~-~~~l~iL~~-~~~~~~~~i~H~fsG~-~~~~~~~l~--~G~~~si 173 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDA---------H-ERFMALLEP-WLDKLPGAVLHCFTGT-REEMQACLA--RGLYIGI 173 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCc---------h-HHHHHHHHH-hccCCCCeEEEecCCC-HHHHHHHHH--CCCEEEE
Confidence 455666899999999999998411 1 123344552 123332133698 222 222333332 3899999
Q ss_pred cccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCC-ccccc-------hhhHHHHHHHHHHhhhhhccCCCChhhHHH
Q 004052 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYF-------LGAKRAREVVFSVLRDTCIDEDLSVGEAIE 364 (776)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~-------~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~ 364 (776)
++..... .. ...++++++..|.+|+|.-||+++. |..+. ....+...++. .+++. -.++. +
T Consensus 174 ~g~i~~~-~~--~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~-~iA~l---~~~~~----~ 242 (258)
T PRK10425 174 TGWVCDE-RR--GLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQ-RIAHW---RGEDA----A 242 (258)
T ss_pred Cceeecc-cc--cHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHH-HHHHH---HCcCH----H
Confidence 8865321 11 1367888999999999999998753 31110 01122333322 22221 24554 5
Q ss_pred HHHHHHHHhHHHHhCC
Q 004052 365 VAKDIFALNAAQFYKI 380 (776)
Q Consensus 365 ~~~~Il~~NA~rly~l 380 (776)
.+..+.++|+.++|++
T Consensus 243 ~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 243 WLAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 6888999999999985
No 34
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.12 E-value=0.035 Score=56.10 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (776)
.+..|..-+++|.++++|+.+||--+.. .-..+..|+ ++.+..++.-.+|+-|...-... .+.. .-+|++
T Consensus 112 E~evf~~QL~LA~e~dvPviVHTPr~nK----~e~t~~ild-i~~~~~l~~~lvvIDH~N~etv~---~vld--~e~~vG 181 (254)
T COG1099 112 EKEVFREQLELARELDVPVIVHTPRRNK----KEATSKILD-ILIESGLKPSLVVIDHVNEETVD---EVLD--EEFYVG 181 (254)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCCcc----hhHHHHHHH-HHHHcCCChhheehhcccHHHHH---HHHh--ccceEE
Confidence 3445666689999999999999965421 112233444 44434677777888998532221 1221 246666
Q ss_pred ccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHH
Q 004052 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371 (776)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~ 371 (776)
+.-........ -..++++..+.+|||..||+-+-+.-.+. .-|.++. + +...+. + +..+++++
T Consensus 182 lTvqPgKlt~~----eAveIV~ey~~~r~ilnSD~~s~~sd~la---vprtal~-----m-~~~gv~--~--~~i~kV~~ 244 (254)
T COG1099 182 LTVQPGKLTVE----EAVEIVREYGAERIILNSDAGSAASDPLA---VPRTALE-----M-EERGVG--E--EEIEKVVR 244 (254)
T ss_pred EEecCCcCCHH----HHHHHHHHhCcceEEEecccccccccchh---hhHHHHH-----H-HHhcCC--H--HHHHHHHH
Confidence 65433222222 23344555668999999997654432111 1122221 1 112233 2 67999999
Q ss_pred HhHHHHhCCC
Q 004052 372 LNAAQFYKIN 381 (776)
Q Consensus 372 ~NA~rly~l~ 381 (776)
+||.++|++.
T Consensus 245 ~NA~~~~~l~ 254 (254)
T COG1099 245 ENALSFYGLS 254 (254)
T ss_pred HHHHHHhCcC
Confidence 9999999974
No 35
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=96.99 E-value=0.008 Score=66.23 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCc---CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-ee
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL---RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QV 288 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~---~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p-NV 288 (776)
+..+.++++.|+++|+||.+|++..+-.... .......+..+++ +||+++|++.|.+.+ +...+....+ ||
T Consensus 112 ~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~--~~p~~~v~i~Hvst~---~~~~~i~~ak~~v 186 (335)
T cd01294 112 LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQ--RFPKLKIVLEHITTA---DAVEYVKSCNENV 186 (335)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHH--HcCCCeEEEecccHH---HHHHHHHhCCCCc
Confidence 4678999999999999999999853210000 0001125667777 799999999999754 4445554555 78
Q ss_pred eecccccC--------------------CCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc-----cch-hhHHHHH
Q 004052 289 YLDFGLAI--------------------PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPET-----YFL-GAKRARE 342 (776)
Q Consensus 289 yld~s~~~--------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-----~~~-~~~~~r~ 342 (776)
+.+++... |-+..+.-+..|-+.+. -|.=.++++||--++... ++. +....-.
T Consensus 187 t~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~-~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~ 265 (335)
T cd01294 187 AATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAAT-SGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPI 265 (335)
T ss_pred EEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHH-cCCCCeEEECCCCCCCCccccCCCCCccccCHHH
Confidence 88765321 11100111223333333 233444689995433210 010 1111111
Q ss_pred HHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 343 VVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 343 ~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.+..++ +.++ +.+++ +.+-.++..|.+|+|+|.
T Consensus 266 ~l~~~~-~~~~-~~l~l----~~~v~~~s~nPA~i~gl~ 298 (335)
T cd01294 266 ALPYLA-EVFE-EHNAL----DKLEAFASDNGPNFYGLP 298 (335)
T ss_pred HHHHHH-HHHh-ccCCH----HHHHHHHHhHHHHHhCCC
Confidence 233333 3344 47886 457788899999999984
No 36
>PLN02611 glutamate--cysteine ligase
Probab=96.90 E-value=0.0047 Score=70.36 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=64.0
Q ss_pred eccCCCCCceEEecccc-hHHHhhhHHHHHHHHHHHHHHHcCCeeE---ecccccCC-----------------------
Q 004052 585 LHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT---FVPKFALD----------------------- 637 (776)
Q Consensus 585 ~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~G~~aT---FmpKP~~~----------------------- 637 (776)
+-=|-| ||+|++..|+ +.-++++.+...+..++.+|+++|+... ++|+....
T Consensus 124 ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~~~~~i~pk~RY~~M~~y~~~~g~~ 202 (482)
T PLN02611 124 VSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIMPKGRYKIMRNYMPKVGSL 202 (482)
T ss_pred eEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCccccccCCCChHHHHHHHHHHHhhhh
Confidence 334666 9999999997 5788999999999999999999999632 34442211
Q ss_pred ---C--CCccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCC
Q 004052 638 ---D--IGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (776)
Q Consensus 638 ---~--~GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~ 694 (776)
. .-.|+|||+..-+.. .+-.-+.-++...|.++|+++-++
T Consensus 203 g~~MM~~t~g~QVhvd~~see-----------------d~v~~~~~~~~l~Pvl~ALfANSP 247 (482)
T PLN02611 203 GLDMMFRTCTVQVNLDFSSEQ-----------------DMVRKFRVGLALQPIATALFANSP 247 (482)
T ss_pred hhhhccceEEEEEEecCCCHH-----------------HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 0 246789998774311 122334455677788888877553
No 37
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.0093 Score=63.97 Aligned_cols=155 Identities=24% Similarity=0.288 Sum_probs=98.4
Q ss_pred cCCCCCceEEecccchHH-HhhhHHHHHHHHHHHHHHHcCCeeE--------------ecccc-c----------CCC-C
Q 004052 587 AEAGKGQFEIALGHTVAA-KAADNLIFTREVLRAVARKHGLLAT--------------FVPKF-A----------LDD-I 639 (776)
Q Consensus 587 ~E~~pGQ~Ei~l~~~~~l-~aaD~~~~~r~~ik~vA~~~G~~aT--------------FmpKP-~----------~~~-~ 639 (776)
+|---.+-|+..+.+..+ +|+-.+--.|..+++.|..||+... --+|| + ..+ -
T Consensus 43 ~e~~e~~vE~~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~~ 122 (369)
T COG2170 43 HEITESTVELATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNPRYQRLIERTGYLGRQMT 122 (369)
T ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhhhhhccCCCChhHHHHHHHhhhHHhhee
Confidence 455556778888887544 5677777889999999999999842 22344 1 000 1
Q ss_pred CccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCC---------CcccCCC----CCC-c
Q 004052 640 GSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP---------NSYDRIQ----PNT-W 705 (776)
Q Consensus 640 GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~---------nSY~Rl~----~~~-~ 705 (776)
=-|.|||+.+-+. +..-..+-+|+.++|-+.|+.+.++ .|+|+-. |.. -
T Consensus 123 v~G~HVHVGi~~~-----------------d~~~~~l~~l~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~~g~ 185 (369)
T COG2170 123 VAGQHVHVGIPSP-----------------DDAMYLLHRLLRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPTNGL 185 (369)
T ss_pred eeeEEEEecCCCH-----------------HHHHHHHHHHHhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCcCCC
Confidence 2479999988432 2356678899999999999998765 3554432 111 0
Q ss_pred CCcccccc--------------cCCCC---CcccccCCCCCCCCCccEEEEcCCCCCCcHH--HHHHHHHHHHHhhhhc
Q 004052 706 SGAYQCWG--------------KENRE---APLRTACPPGVKDGVVSNFELKSFDGCANPH--LGLAAIIASGIDGLRR 765 (776)
Q Consensus 706 ap~~~~WG--------------~~NR~---a~iRi~~~~~~~~~~~~~~E~R~~d~~aNPY--L~lAailaAGl~Gi~~ 765 (776)
.|..-+|+ ++|.. -.|| |++ .-+++|+|.+|...||- ++++|++-|-+--+-.
T Consensus 186 pp~f~sw~~f~~~~~~~~~tG~I~~~~~lwwdIR-Psp------h~gTlEvRi~D~~~~l~~~~aivaL~~Alv~~ll~ 257 (369)
T COG2170 186 PPAFQSWAAFEAFFRDQLETGTIDSMGDLWWDIR-PSP------HLGTLEVRICDTVLNLAELLAIVALIHALVVWLLR 257 (369)
T ss_pred CccccCHHHHHHHHHHHHHhcccccccceEEecc-cCC------CCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 12335554 23322 2355 331 12589999999999995 5666777775544433
No 38
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=96.47 E-value=0.013 Score=65.26 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=68.9
Q ss_pred eeccCCCCCceEEecccc-hHHHhhhHHHHHHHHHHHHHHHcCC-e-eE-----eccc----ccCC--------------
Q 004052 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGL-L-AT-----FVPK----FALD-------------- 637 (776)
Q Consensus 584 ~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~G~-~-aT-----FmpK----P~~~-------------- 637 (776)
.+.+|.-..|.|++.+++ +.-++.+.+...|..+..+|.++|. . +. |+.- |..+
T Consensus 31 ~~~~El~~~~IE~~T~~~~~~~el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~ 110 (376)
T TIGR02048 31 GFVREPDSRNVEYTTPPLNSYDRLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGT 110 (376)
T ss_pred CCccchhhcEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhh
Confidence 455588899999999997 5777899999999999999999997 3 11 1111 1111
Q ss_pred -CCCccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCC
Q 004052 638 -DIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (776)
Q Consensus 638 -~~GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~ 694 (776)
..=+|+|||+.+-+.+ .+-..+..|.-++|.|.|+++.++
T Consensus 111 ~~~i~G~HVHVgv~d~d-----------------~av~v~n~lr~~LP~LlALSAsSP 151 (376)
T TIGR02048 111 QVVTASVHINIGIPDPE-----------------ELMRACRLVRMEAPLFLALSASSP 151 (376)
T ss_pred hheeeEEEEEcCCCCHH-----------------HHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1236899999984321 355677888899999999888764
No 39
>PRK05451 dihydroorotase; Provisional
Probab=96.30 E-value=0.071 Score=59.05 Aligned_cols=79 Identities=22% Similarity=0.217 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChh-----hhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p 286 (776)
+|..++++++.|+++|+||.+|++-.+...+. ...+. .+..+++ +||+++++++|.+-+...+...-+ ..
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~-~~~e~~~~~~~l~~lA~--~~pg~~lhI~Hlst~~~~e~i~~a--~~ 190 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI-FDREAVFIDRVLEPLRR--RFPKLKIVFEHITTKDAVDYVREA--ND 190 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCccccc-ccchHHHHHHHHHHHHH--hcCCCcEEEEecCcHHHHHHHHhc--CC
Confidence 56789999999999999999999863211111 11122 3566777 799999999999876554443222 45
Q ss_pred eeeeccccc
Q 004052 287 QVYLDFGLA 295 (776)
Q Consensus 287 NVyld~s~~ 295 (776)
||+.+++..
T Consensus 191 ~it~Et~ph 199 (345)
T PRK05451 191 NLAATITPH 199 (345)
T ss_pred CEEEEecHH
Confidence 888877653
No 40
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=96.20 E-value=0.033 Score=60.41 Aligned_cols=152 Identities=20% Similarity=0.127 Sum_probs=83.3
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCC-CchHHHHHHHHHhCCeeeeccc-
Q 004052 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFG- 293 (776)
Q Consensus 216 l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g-~p~~~e~~~la~~~pNVyld~s- 293 (776)
+.....+..+.|+||.+|++.|. ..++..-+++.+..-+--+||+.|+. .+.......++..=-+|-+|.=
T Consensus 144 lrAaa~A~~~TG~pI~~H~~~g~-------~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g 216 (308)
T PF02126_consen 144 LRAAARAHKETGAPISTHTGRGT-------RMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIG 216 (308)
T ss_dssp HHHHHHHHHHHT-EEEEEESTTG-------TCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT
T ss_pred HHHHHHHHHHhCCeEEEcCCCCC-------cCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCc
Confidence 44445667788999999998762 13554445555445667899999994 2222223445543224556554
Q ss_pred ----ccCC----CccHHH-HHHHHHHHHHHCCCCcEEEecCCCCC-ccccchhhHH-HHHHHHHHhhhhhccCCCChhhH
Q 004052 294 ----LAIP----KLSVQG-MISSIKELLELAPTKKVMFSTDAYAS-PETYFLGAKR-AREVVFSVLRDTCIDEDLSVGEA 362 (776)
Q Consensus 294 ----~~~~----~~~~~g-~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~~~~~~-~r~~l~~~l~~~v~~g~l~~~ea 362 (776)
++.. .+.++. -...+..+++.+=.+|||.|.|.... ....+.+.-+ +.-.+.+++..+.+.| ++ +
T Consensus 217 ~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~~~G-v~--~- 292 (308)
T PF02126_consen 217 REFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLKERG-VS--E- 292 (308)
T ss_dssp -B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHHHTT-S---H-
T ss_pred ccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHHHHcC-CC--H-
Confidence 2211 011222 23478888888888999999996441 1111111111 1113344455444443 55 3
Q ss_pred HHHHHHHHHHhHHHHhC
Q 004052 363 IEVAKDIFALNAAQFYK 379 (776)
Q Consensus 363 ~~~~~~Il~~NA~rly~ 379 (776)
+.+++|+-+|.+|+|.
T Consensus 293 -~~i~~ilv~NP~r~lt 308 (308)
T PF02126_consen 293 -EDIDKILVENPARILT 308 (308)
T ss_dssp -HHHHHHHTHHHHHHHS
T ss_pred -HHHHHHHHHCHHHHcC
Confidence 6789999999999983
No 41
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=96.06 E-value=0.14 Score=54.73 Aligned_cols=94 Identities=28% Similarity=0.322 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHh--cCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeecc
Q 004052 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILED--KRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDF 292 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~--~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~ 292 (776)
.|..-+++|.+..+|+.+|.-.. . ..+-++++. ..+++ =+++|+-.-...++..++... +|+++
T Consensus 136 vFekQl~LA~~~~~Pl~iH~r~a---------~-~d~~eIl~~~~~~~~~--~vvvHsFtGs~e~~~~~lk~~--~yig~ 201 (296)
T KOG3020|consen 136 VFEKQLDLAKRLKLPLFIHCRSA---------H-EDLLEILKRFLPECHK--KVVVHSFTGSAEEAQKLLKLG--LYIGF 201 (296)
T ss_pred HHHHHHHHHHHccCCeeeechhh---------h-HHHHHHHHHhccccCC--ceEEEeccCCHHHHHHHHHcc--EEecc
Confidence 45555788889999999998531 1 112233331 13333 455787333445666677655 99999
Q ss_pred cccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 004052 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (776)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (776)
++++... . .-.++++..|.+|+|--||++.
T Consensus 202 ~g~~~k~-----~-e~~~vlr~iP~erlllETDsP~ 231 (296)
T KOG3020|consen 202 TGCSLKT-----E-ENLEVLRSIPLERLLLETDSPY 231 (296)
T ss_pred cceeeec-----h-hhHHHHhhCCHhHeeeccCCcc
Confidence 9988653 1 2245566899999999999754
No 42
>PLN02599 dihydroorotase
Probab=96.06 E-value=0.095 Score=58.31 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhh----HHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHL----RAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L----~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (776)
+..++++++.++++|+|+.+|....+...+.......++ ..++. ++|+++|++.|.+.+...++..-+.. .||
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la--~~~g~kI~i~HiSt~~~ve~v~~ak~-~~v 211 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQ--KLPQLKIVMEHITTMDAVEFVESCGD-GNV 211 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHH--hccCCeEEEEecChHHHHHHHHhccC-CCE
Confidence 468899999999999999999986321111111111223 33455 79999999999976544333322221 178
Q ss_pred eecccccC--------------------CCc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccch------hhHHHH
Q 004052 289 YLDFGLAI--------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL------GAKRAR 341 (776)
Q Consensus 289 yld~s~~~--------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~------~~~~~r 341 (776)
+.+++... |-+ ++.. +..|.+.+.. |.-+.++|||.-+++..... +....-
T Consensus 212 tae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~d-r~aL~~al~~-G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~~ 289 (364)
T PLN02599 212 AATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIH-REALVKAATS-GSKKFFLGTDSAPHPKRAKEASCGCAGIYSAP 289 (364)
T ss_pred EEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHH-HHHHHHHHHc-CCCCEEEecCCCCCChHHhcCCCCCCCcccHH
Confidence 77665321 000 1111 2223333321 21245799997655432111 111100
Q ss_pred HHHHHHhhhhhc-cCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 342 EVVFSVLRDTCI-DEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 342 ~~l~~~l~~~v~-~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
-.+. ++...+. .| ++ +...+++..|.+++|||.
T Consensus 290 ~~l~-~l~~~~~~~g--~l----~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 290 VALS-LYAKAFEEAG--AL----DKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred HHHH-HHHHHHHhcC--CH----HHHHHHHhHHHHHHhCCC
Confidence 0122 2333333 24 44 458888999999999994
No 43
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=95.69 E-value=0.06 Score=56.08 Aligned_cols=105 Identities=26% Similarity=0.184 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (776)
.+..+.++++.+.++|+|+.+|++.+... ...+..+++.... +.++++.|++.........++ .. |++++
T Consensus 131 ~~~~~~~~~~~a~~~~~~i~~H~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~-~~-g~~~~ 200 (275)
T cd01292 131 SDESLRRVLEEARKLGLPVVIHAGELPDP-------TRALEDLVALLRL-GGRVVIGHVSHLDPELLELLK-EA-GVSLE 200 (275)
T ss_pred CcHHHHHHHHHHHHcCCeEEEeeCCcccC-------ccCHHHHHHHHhc-CCCEEEECCccCCHHHHHHHH-Hc-CCeEE
Confidence 45577888999999999999999865210 1123344442112 679999999764323333333 32 88888
Q ss_pred ccccCCCcc--HHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 004052 292 FGLAIPKLS--VQGMISSIKELLELAPTKKVMFSTDAYA 328 (776)
Q Consensus 292 ~s~~~~~~~--~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (776)
++...+... .......++.+++.+ .++++|||+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lgTD~~~ 237 (275)
T cd01292 201 VCPLSNYLLGRDGEGAEALRRLLELG--IRVTLGTDGPP 237 (275)
T ss_pred ECCcccccccCCcCCcccHHHHHHCC--CcEEEecCCCC
Confidence 876543221 011123566666654 79999999543
No 44
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=95.68 E-value=0.019 Score=61.84 Aligned_cols=96 Identities=23% Similarity=0.261 Sum_probs=65.6
Q ss_pred eeeeccCCCCCceEEecccc-hHHHhhhHHHHHHHHHHHHHHHcCCeeE---ecc-----------ccc-------CCC-
Q 004052 582 VEQLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT---FVP-----------KFA-------LDD- 638 (776)
Q Consensus 582 ve~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~G~~aT---Fmp-----------KP~-------~~~- 638 (776)
-..+++|-..+|.||+..|+ +.-++.+.+...+..+..+|+++|+... ++| ||- .+.
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 34888999999999999997 5677899999999999999999998732 333 320 001
Q ss_pred -------CCccceeeeccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhCCC
Q 004052 639 -------IGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPV 693 (776)
Q Consensus 639 -------~GsG~HvH~Sl~~~g~n~f~~~d~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt 693 (776)
.-+|+|+|+++-... +..-..+..+...+|.+.|+++.+
T Consensus 114 g~~~~~~~~~g~hvhV~v~~~~----------------e~~v~~~n~~~~~~P~llALsANS 159 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDDGD----------------EAAVRVMNALRPWLPVLLALSANS 159 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESSSH----------------HHHHHHHHHHHTTHHHHHHHH--B
T ss_pred hhhhhhhhhcccceEEeCCCcc----------------HHHHHHHHHHHHHhHHHHHHHcCC
Confidence 225899999983211 112245667778888888888755
No 45
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=94.97 E-value=0.39 Score=51.83 Aligned_cols=137 Identities=14% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHHHHhhCCCcEE-EecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCC----chH-----HHHHHHHHhCC-
Q 004052 218 SSLEVAQFLDLPLQ-IHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY----PFS-----KEASYLAYVYP- 286 (776)
Q Consensus 218 ~l~e~a~e~glPvq-~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~----p~~-----~e~~~la~~~p- 286 (776)
.+.+.|.++|++|- -|++ .--..+++. +++.++|.-|+.. +.. .++-.++..=.
T Consensus 153 ~lV~~~N~LgIiiDlSH~s------------~kt~~Dvl~---~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 153 ELVREMNELGIIIDLSHLS------------DKTFWDVLD---LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHhcCCEEEecccC------------CccHHHHHh---ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE
Confidence 45788899999883 3544 223555666 7888999989841 111 22333432211
Q ss_pred ---e---eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHH--HHHHHHhhhhhccCCCC
Q 004052 287 ---Q---VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAR--EVVFSVLRDTCIDEDLS 358 (776)
Q Consensus 287 ---N---Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r--~~l~~~l~~~v~~g~l~ 358 (776)
| -|+.. +--+..+.+.+.+++..+.+.+|.+.|-+|||-...+.. ...++ .-+-+++.+..+.| ++
T Consensus 218 Igv~~~~~fl~~-~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~----p~gled~~~l~~l~~~L~~~G-~~ 291 (313)
T COG2355 218 IGVNFIPAFLRP-GGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGP----PDGLEDVGKLPNLTAALIERG-YS 291 (313)
T ss_pred EEEEeehhhccC-CCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCC----chhhcChhHHHHHHHHHHHcC-CC
Confidence 1 12222 111223466788899999999999999999994433321 11111 22344555666666 55
Q ss_pred hhhHHHHHHHHHHHhHHHHhC
Q 004052 359 VGEAIEVAKDIFALNAAQFYK 379 (776)
Q Consensus 359 ~~ea~~~~~~Il~~NA~rly~ 379 (776)
. +.+++|+++|..|+++
T Consensus 292 e----~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 292 E----EEIEKIAGENWLRVLK 308 (313)
T ss_pred H----HHHHHHHHHhHHHHHH
Confidence 3 6799999999999985
No 46
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=94.91 E-value=0.33 Score=55.34 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=37.2
Q ss_pred eccCCCCCceEEecccc-hHHHhhhHHHHHHHHHHHHHHHcCCee
Q 004052 585 LHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLA 628 (776)
Q Consensus 585 ~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~G~~a 628 (776)
+-=|-| ||+|++..|+ +.-++++.+...+..++.+|+++|+..
T Consensus 81 itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l 124 (446)
T TIGR01436 81 ISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGF 124 (446)
T ss_pred EEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 334666 9999999997 577889999999999999999999963
No 47
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.12 Score=52.70 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC--cCCcChhhhHHHHH-hcCCCCcEEEEeCCCCchHHHHHH------HHHh-
Q 004052 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD--LRLSNPLHLRAILE-DKRFSKCRFVLLHASYPFSKEASY------LAYV- 284 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~gd~~~~--~~~~~P~~L~~l~~-~~~~P~l~ivl~H~g~p~~~e~~~------la~~- 284 (776)
-++|+++..+|.|+|+.+|--.. +..| .-.+.+.+|..++. -.|||++|||+-||..-...++.. +++.
T Consensus 118 ~fyPvf~aMqe~nm~LnvHGEvp-ps~D~~Vf~aE~~Flptll~LhqrfP~LKivlEHcTt~dAv~~ve~a~~~sVaaTv 196 (344)
T KOG2902|consen 118 KFYPVFEAMQEQNMPLNVHGEVP-PSIDGHVFDAEKIFLPTLLQLHQRFPQLKIVLEHCTTMDAVNFVESAKEGSVAATV 196 (344)
T ss_pred hhhHHHHHHHHcCceEEecCCCC-CccCCceecchhhhHHHHHHHHHhCccceeHHHhcccHHHHHHHHhhcCCceeeEe
Confidence 57899999999999999997652 2222 33455665554443 138999999999994322211111 1110
Q ss_pred -CCeeeecccccCCC----cc----HHHHHHHHHHHHHHCCCCcEEEecCCCCCccc
Q 004052 285 -YPQVYLDFGLAIPK----LS----VQGMISSIKELLELAPTKKVMFSTDAYASPET 332 (776)
Q Consensus 285 -~pNVyld~s~~~~~----~~----~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~ 332 (776)
-.++|+..--|..+ .- .+--++.|-.+. ..+--|+.||||+-.+|..
T Consensus 197 TahHL~Lt~~dwqg~P~nfCkPVaK~e~dr~AlvkAa-tSg~pkFFfGsDSAPHprs 252 (344)
T KOG2902|consen 197 TAHHLLLTRNDWQGQPHNFCKPVAKREIDREALVKAA-TSGSPKFFFGSDSAPHPRS 252 (344)
T ss_pred ehheeEEehhhhcCCCcccccccccCcccHHHHHHHH-hcCCCceeecCCCCCCccc
Confidence 13677766655421 10 001112222221 2455789999999877753
No 48
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=93.98 E-value=0.47 Score=49.47 Aligned_cols=136 Identities=23% Similarity=0.292 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeecccc
Q 004052 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~ 294 (776)
++...+++|.+.|.|||+||-..+ ...-.-+..++++--.-..++|--|+ -|.... +.| . +
T Consensus 146 vl~~a~elA~dvdc~vqLHtes~~------~~~~~~i~~~ak~~G~~~~~VVkHha-~p~v~~-------~~~--~---G 206 (285)
T COG1831 146 VLEYAMELAKDVDCAVQLHTESLD------EETYEEIAEMAKEAGIKPYRVVKHHA-PPLVLK-------CEE--V---G 206 (285)
T ss_pred HHHHHHHHhhcCCCcEEEecCCCC------hHHHHHHHHHHHHhCCCcceeEeecC-Cccchh-------hhh--c---C
Confidence 556678999999999999996432 11123466667643344567777776 443321 112 1 1
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCC---CccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHH
Q 004052 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA---SPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371 (776)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~---~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~ 371 (776)
.||.. .+.++.+++.++.+ .+||+-||--- .|... ++. +.+-+-..+.+++|.++. +.+.+|+-
T Consensus 207 i~pSV--~asr~~v~~a~~~g--~~FmmETDyIDDp~Rpgav-L~P----ktVPrr~~~i~~~g~~~e----e~vy~i~~ 273 (285)
T COG1831 207 IFPSV--PASRKNVEDAAELG--PRFMMETDYIDDPRRPGAV-LGP----KTVPRRTREILEKGDLTE----EDVYRIHV 273 (285)
T ss_pred cCCcc--cccHHHHHHHHhcC--CceEeecccccCcccCCCc-CCc----cchhHHHHHHHHhcCCcH----HHHHHHHH
Confidence 22222 12244677777765 59999999211 11111 111 111122234455677763 78999999
Q ss_pred HhHHHHhCCCC
Q 004052 372 LNAAQFYKINL 382 (776)
Q Consensus 372 ~NA~rly~l~~ 382 (776)
+|..|+|+++.
T Consensus 274 E~pe~VYg~~~ 284 (285)
T COG1831 274 ENPERVYGIEL 284 (285)
T ss_pred hCHHHHhCccC
Confidence 99999999864
No 49
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=93.36 E-value=1.4 Score=49.94 Aligned_cols=150 Identities=16% Similarity=-0.029 Sum_probs=83.5
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchH---------HHHHH
Q 004052 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEASY 280 (776)
Q Consensus 210 ~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~---------~e~~~ 280 (776)
...+..+..+++.+.++|.++++|+-..+ .+.-.-+..+++..+..+.++.+.|.+.... .+...
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~ 268 (415)
T cd01297 195 YAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIE 268 (415)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHH
Confidence 45677889999999999999999996432 1111223333321123478899999853322 12222
Q ss_pred HHHh-CCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccC-CCC
Q 004052 281 LAYV-YPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDE-DLS 358 (776)
Q Consensus 281 la~~-~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g-~l~ 358 (776)
-+.. -.+|+.++....-. . ...++.+++. ...+.+||...++. .+... ...+..++..++.++ .++
T Consensus 269 ~a~~~G~~v~~e~~p~~~~-~----~~~~~~l~~~---~~~~i~SDh~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~ 336 (415)
T cd01297 269 AARAEGLQVTADVYPYGAG-S----EDDVRRIMAH---PVVMGGSDGGALGK-PHPRS---YGDFTRVLGHYVRERKLLS 336 (415)
T ss_pred HHHHhCCcEEEEeCCCCCC-c----HHHHHHHHcC---CCceeeeCCCcCCC-CCcch---hCCHHHHHHHHhcccCCCC
Confidence 2222 24788887663211 1 3345555554 46679999755331 01111 111444555555443 477
Q ss_pred hhhHHHHHHHHHHHhHHHHhCCC
Q 004052 359 VGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 359 ~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.. +.+ +.+-.|++++|++.
T Consensus 337 ~~---~~~-~~~t~~pA~~~gl~ 355 (415)
T cd01297 337 LE---EAV-RKMTGLPARVFGLA 355 (415)
T ss_pred HH---HHH-HHHHHHHHHHhCCC
Confidence 63 344 44557788888885
No 50
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=93.05 E-value=0.52 Score=51.60 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHHCCCCcEEEecCCCCC---ccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHH
Q 004052 300 SVQGMISSIKELLELAPTKKVMFSTDAYAS---PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (776)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~---P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~r 376 (776)
+.+.+.+++..+++++|.+.|-+|||--.. |.. +.....+.. +..++.+. .++. +.+++|+++|+.|
T Consensus 247 ~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~g-l~~~~~~~~----l~~~L~~r-G~s~----~~i~kI~g~N~lR 316 (320)
T PF01244_consen 247 SLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEG-LEDPSDLPN----LTEELLKR-GYSE----EDIEKILGGNFLR 316 (320)
T ss_dssp BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBT-BSSGGGHHH----HHHHHHHT-TS-H----HHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCc-cCCHHHHHH----HHHHHHHC-CCCH----HHHHHHHhHhHHH
Confidence 456677899999999999999999993222 211 112222332 23333333 3553 6799999999999
Q ss_pred HhC
Q 004052 377 FYK 379 (776)
Q Consensus 377 ly~ 379 (776)
+|+
T Consensus 317 v~~ 319 (320)
T PF01244_consen 317 VLR 319 (320)
T ss_dssp HHH
T ss_pred Hhc
Confidence 984
No 51
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=92.45 E-value=2.5 Score=46.67 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhC-Ceeee
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVY-PQVYL 290 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~-pNVyl 290 (776)
++..+..+++.+.++|+|+.+|+. ....+++ .+++++++.|.+.+...+....++.. -+|+.
T Consensus 113 ~~~~l~~~~~~~~~~g~~v~~H~E--------------r~~~la~---~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ 175 (337)
T cd01302 113 DDGTLMRTFLEIASRGGPVMVHAE--------------RAAQLAE---EAGANVHIAHVSSGEALELIKFAKNKGVKVTC 175 (337)
T ss_pred CHHHHHHHHHHHHhcCCeEEEeHH--------------HHHHHHH---HhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEE
Confidence 444566777888889999999986 2344555 47899999999866555554444332 25655
Q ss_pred cccccC------------------CCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc-------cc---hhhHHHHH
Q 004052 291 DFGLAI------------------PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPET-------YF---LGAKRARE 342 (776)
Q Consensus 291 d~s~~~------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-------~~---~~~~~~r~ 342 (776)
+++... |.+.....+..|.+.++.+-.+ +++||.-+++.. +| .+....-.
T Consensus 176 ev~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id--~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~ 253 (337)
T cd01302 176 EVCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKID--TIASDHAPHSKEEKESGKDIWKAPPGFPGLET 253 (337)
T ss_pred EcChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCC--EEecCCCCCCHHHhccCCCcccCCCCcccHHH
Confidence 554321 1110111233444455433333 689996554310 01 01001112
Q ss_pred HHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 343 VVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 343 ~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.+..++...++ +.+++ +.+-+++..|++++|++.
T Consensus 254 ~l~~~~~~~~~-~~i~~----~~~~~~~s~~pA~~~gl~ 287 (337)
T cd01302 254 RLPILLTEGVK-RGLSL----ETLVEILSENPARIFGLY 287 (337)
T ss_pred HHHHHHHHHHh-cCCCH----HHHHHHHHHHHHHHcCCC
Confidence 23333334443 45775 345667778999999984
No 52
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=92.26 E-value=2.2 Score=46.44 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--cchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHH
Q 004052 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (776)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~--~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rl 377 (776)
+.+.+.+++..+.+++|.+.+.+|||--..+.. .+.....+ .+++.++++.| ++. +.+++|+++|+.|+
T Consensus 239 ~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~----~~l~~~L~~rG-~s~----~~i~~i~g~N~lRv 309 (309)
T cd01301 239 TLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDL----PNLTAELLERG-YSE----EEIEKIAGGNFLRV 309 (309)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHH----HHHHHHHHHcC-CCH----HHHHHHHhhchhcC
Confidence 345677899999999999999999994332210 01112222 23344444444 553 67999999999874
No 53
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=91.25 E-value=0.48 Score=52.41 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
+|..++++++.|+++|+|+.+|++-.....+. ..+.|..+..++. ++|++++++.|.+.+-..++..-+ ..+
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~--~~~~~~~~i~H~st~~~~~~i~~a--~~~ 188 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQ--RFPALKVVLEHITTKDAIDYVEDG--NNR 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHH--HccCCeEEEEecCcHHHHHHHHHc--CCC
Confidence 45789999999999999999999864111111 2234556667777 799999999999876544443333 224
Q ss_pred eeecccc
Q 004052 288 VYLDFGL 294 (776)
Q Consensus 288 Vyld~s~ 294 (776)
|+.+++.
T Consensus 189 vt~E~~p 195 (341)
T TIGR00856 189 LAATITP 195 (341)
T ss_pred EEEEEcH
Confidence 7666654
No 54
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=90.82 E-value=4.9 Score=43.03 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCC---CchHHHHHHHHHhCC
Q 004052 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS---YPFSKEASYLAYVYP 286 (776)
Q Consensus 210 ~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g---~p~~~e~~~la~~~p 286 (776)
++....+....++..+.|.|+..||-.|-. -...++-+.+.+ -+=-+++++||+ .|+..+ ..|+..=-
T Consensus 148 p~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~-------g~eq~~il~~eg-vdl~~v~igH~d~n~dd~~y~-~~l~~~Ga 218 (316)
T COG1735 148 PLEEKSLRAAARAHKETGAPISTHTPAGTM-------GLEQLRILAEEG-VDLRKVSIGHMDPNTDDVYYQ-KKLADRGA 218 (316)
T ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccchhh-------hHHHHHHHHHcC-CChhHeeEeccCCCCChHHHH-HHHHhcCc
Confidence 344445666677777889999999976521 122344444443 445689999995 222111 12221111
Q ss_pred eeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEe-------cCCCCCccc-cchhhHH--HHHHHHHHhhhhhccCC
Q 004052 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFS-------TDAYASPET-YFLGAKR--AREVVFSVLRDTCIDED 356 (776)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfg-------SD~~~~P~~-~~~~~~~--~r~~l~~~l~~~v~~g~ 356 (776)
-+-+|.=+...+.+.+.-...+.++++.+-.++|+.| +| ++.. .+.+... +.-++.+++.++-+.|
T Consensus 219 ~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~---~~~~~~~~~~~~~g~~~I~~~fIP~Lk~~G- 294 (316)
T COG1735 219 FLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLSDD---VFLKSMLKANGGWGYGYILNDFIPRLKRHG- 294 (316)
T ss_pred eEEecccCccccCcHHHhhhhHHHHHHhhHhhheecccchhhhhhh---HHHHhhhhhcCCcccchhhHhhHHHHHHcC-
Confidence 2344443333222222223456667777777888888 33 1110 1111111 1122334444444433
Q ss_pred CChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 357 LSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 357 l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
++ | +.++++|-+|.+|+|...
T Consensus 295 vd--e--~~i~~mlvdNP~r~f~~~ 315 (316)
T COG1735 295 VD--E--ETIDTMLVDNPARLFTAK 315 (316)
T ss_pred CC--H--HHHHHHHhhCHHHHhccC
Confidence 44 3 789999999999999753
No 55
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=90.45 E-value=5.5 Score=45.58 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCC--------------CCCCc-CCcChhhh-----HHHHHhcCCCCcEEEEeCCC
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNPLHL-----RAILEDKRFSKCRFVLLHAS 271 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd--------------~~~~~-~~~~P~~L-----~~l~~~~~~P~l~ivl~H~g 271 (776)
.+..+..+++.++++|+++.+|.-... .+... ..+.|... ..++...++.+.++++.|.+
T Consensus 160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s 239 (447)
T cd01314 160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 344566677888888999998863210 00000 01234322 11222113678999999998
Q ss_pred CchHHHHHHHHHhC-CeeeecccccCCCccHH---------------------HHHHHHHHHHHHCCCCcEEEecCCCCC
Q 004052 272 YPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQ---------------------GMISSIKELLELAPTKKVMFSTDAYAS 329 (776)
Q Consensus 272 ~p~~~e~~~la~~~-pNVyld~s~~~~~~~~~---------------------g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (776)
.+...+....++.. .+|..+++........+ ..+..+-++++.+ -....|||..++
T Consensus 240 ~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G--~i~~igsDh~~~ 317 (447)
T cd01314 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSG--TLQTVGSDHCPF 317 (447)
T ss_pred CHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCC--CeeEEECCCCCC
Confidence 76555544444333 24554444332110000 0112233444422 123489996443
Q ss_pred ccccchhhHHH---------------HHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCCC
Q 004052 330 PETYFLGAKRA---------------REVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (776)
Q Consensus 330 P~~~~~~~~~~---------------r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (776)
.. ..+.+ --.+..++.+.+..+.++.. .+-+++..|.+++|+|..
T Consensus 318 ~~----~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~----~~~~~~t~~pA~~~gl~~ 377 (447)
T cd01314 318 NF----AQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLE----KFVELTSTNPAKIFGLYP 377 (447)
T ss_pred CH----HHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHH----HHHHHHhhHHHHHhCCCC
Confidence 21 11111 12244455566667778863 356667789999999853
No 56
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=87.26 E-value=6.9 Score=44.13 Aligned_cols=139 Identities=20% Similarity=0.261 Sum_probs=71.7
Q ss_pred CCc--EEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCc-hH-HHHHHHHHhCCeeeecccccCCCccH-
Q 004052 227 DLP--LQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-FS-KEASYLAYVYPQVYLDFGLAIPKLSV- 301 (776)
Q Consensus 227 glP--vq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p-~~-~e~~~la~~~pNVyld~s~~~~~~~~- 301 (776)
|+| |.+|.|.+... -..|.++++.+..|--.|.--|..-. .. .+....++ ...++|+..-+.....
T Consensus 188 ~~~g~~~vH~g~~~~~-------l~~l~~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~--~gg~iDv~~~~~~~~l~ 258 (389)
T TIGR01975 188 GKPGIVNFHVGDSKRA-------LQPIYELVENTDVPITQFLPTHINRNVPLFEAGLEFAK--KGGTIDLTSSIDPQFRK 258 (389)
T ss_pred CCCcEEEEEeCCchhh-------HHHHHHHHHhcCCChhheecCccCCCHHHHHHHHHHHH--hCCcEEEeCCCCccchh
Confidence 488 99999965221 01344555545555555555565311 11 12222222 3567777643221100
Q ss_pred ---HHHHHHHHHHHHHC-CCCcEEEecCCCC-Cccccchhh--------HHHHHHHHHHhhhhhccCCCChhhHHHHHHH
Q 004052 302 ---QGMISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGA--------KRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (776)
Q Consensus 302 ---~g~~~~l~~~le~~-~~~kilfgSD~~~-~P~~~~~~~--------~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (776)
....+.++.+++.+ +.+|+.+|||+.. .|. +... -.+ ..+-..+..++..+.++..+ .. +
T Consensus 259 ~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~--~~~~g~~~~~g~g~~-~sl~~~~~~lv~~g~ls~~e---al-~ 331 (389)
T TIGR01975 259 EGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPF--FDENGELTGLGVGSF-ETLFEEVREAVKDGDVPLEK---AL-R 331 (389)
T ss_pred ccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCc--cccccccccCCcCcH-HHHHHHHHHHHHhCCCCHHH---HH-H
Confidence 01123667777775 5789999999753 342 1100 000 01122334555567788643 34 4
Q ss_pred HHHHhHHHHhCCC
Q 004052 369 IFALNAAQFYKIN 381 (776)
Q Consensus 369 Il~~NA~rly~l~ 381 (776)
..-.|++++++++
T Consensus 332 ~~T~npA~~Lgl~ 344 (389)
T TIGR01975 332 VITSNVAGVLNLT 344 (389)
T ss_pred HHHHHHHHHhCCC
Confidence 4557888999986
No 57
>PLN02942 dihydropyrimidinase
Probab=85.99 E-value=19 Score=41.84 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCC--------------CCCC-cCCcChhh-----hHHHHHhcCCCCcEEEEeCCCC
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLD-LRLSNPLH-----LRAILEDKRFSKCRFVLLHASY 272 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd--------------~~~~-~~~~~P~~-----L~~l~~~~~~P~l~ivl~H~g~ 272 (776)
+..+...++.++++|+++.+|.-..+ .+.. ...+.|.. +..++..-++-+.++.+.|+..
T Consensus 166 ~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~ 245 (486)
T PLN02942 166 DELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMS 245 (486)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 44566777888888999999953210 0100 01123421 2222211124578999999987
Q ss_pred chHHHHHHHHHhC-Ceeeecccc-------------------c---CCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCC
Q 004052 273 PFSKEASYLAYVY-PQVYLDFGL-------------------A---IPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS 329 (776)
Q Consensus 273 p~~~e~~~la~~~-pNVyld~s~-------------------~---~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (776)
....+....++.. -+|..+++. + .|.+.....+..|.+.++.+ -...+|||.-++
T Consensus 246 ~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G--~i~~igTDh~p~ 323 (486)
T PLN02942 246 IDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSG--ILQLVGTDHCPF 323 (486)
T ss_pred HHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCC--ceEEEECCCCCC
Confidence 6653444444333 245555442 1 11111112233444444422 355699996443
Q ss_pred cccc--------c---hhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCCC
Q 004052 330 PETY--------F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (776)
Q Consensus 330 P~~~--------~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (776)
.... | .+....-..+..++...+..+.++.. .+-.++-.|.+++|++..
T Consensus 324 ~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~----~~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 324 NSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPT----DYVRVTSTECAKIFNIYP 383 (486)
T ss_pred ChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCCC
Confidence 2100 0 00000011233334445666778863 355667789999999853
No 58
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=85.32 E-value=13 Score=40.90 Aligned_cols=135 Identities=15% Similarity=0.039 Sum_probs=67.5
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCch----HH------HHHHHHHhCC
Q 004052 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF----SK------EASYLAYVYP 286 (776)
Q Consensus 217 ~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~----~~------e~~~la~~~p 286 (776)
....+++.++|+|+.+|++.+.. ....+..+++ ++ .++.|+-... .. +.. ......
T Consensus 152 ~~~~~~a~~~~~pi~vH~~~~~~-------~~~~~~~~l~----~g--~~~~H~~~g~~~~~~~~~~~~~~~~-~~~~~~ 217 (338)
T cd01307 152 ELAKKIAKEADLPLMVHIGSPPP-------ILDEVVPLLR----RG--DVLTHCFNGKPNGIVDEEGEVLPLV-RRARER 217 (338)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-------CHHHHHHHhc----CC--CEEEeccCCCCCCCCCCCCcHHHHH-HHHHhC
Confidence 35567788999999999985422 2223333333 12 3567762211 11 111 112235
Q ss_pred eeeeccc-ccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHH
Q 004052 287 QVYLDFG-LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEV 365 (776)
Q Consensus 287 NVyld~s-~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~ 365 (776)
++|+|++ +..... .+..+.+++...... +.+||...--....+.. .+...+. .+. ...++. +.
T Consensus 218 G~~~d~~~G~~~~~-----~~~~~~l~~~G~~~~-~lstD~~~~~~~~~p~~-~l~~~l~----~l~-~~gi~~----ee 281 (338)
T cd01307 218 GVIFDVGHGTASFS-----FRVARAAIAAGLLPD-TISSDIHGRNRTNGPVY-ALATTLS----KLL-ALGMPL----EE 281 (338)
T ss_pred CEEEEeCCCCCchh-----HHHHHHHHHCCCCCe-eecCCccccCCCCCccc-cHHHHHH----HHH-HcCCCH----HH
Confidence 8999977 321111 123344555432233 47999532000000111 0122222 221 124664 56
Q ss_pred HHHHHHHhHHHHhCCC
Q 004052 366 AKDIFALNAAQFYKIN 381 (776)
Q Consensus 366 ~~~Il~~NA~rly~l~ 381 (776)
+.+++..|++++|+++
T Consensus 282 ~~~~~T~NpA~~lgl~ 297 (338)
T cd01307 282 VIEAVTANPARMLGLA 297 (338)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 8899999999999984
No 59
>PRK09357 pyrC dihydroorotase; Validated
Probab=84.96 E-value=8.2 Score=43.84 Aligned_cols=162 Identities=16% Similarity=0.101 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCC--C-------CCCcC---CcChh-----hhHHHHHhcCCCCcEEEEeCCCCchHH
Q 004052 214 YIFISSLEVAQFLDLPLQIHTGFGD--K-------DLDLR---LSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSK 276 (776)
Q Consensus 214 ~~l~~l~e~a~e~glPvq~H~G~gd--~-------~~~~~---~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~~ 276 (776)
..+..+++.++++|+|+.+|..-.. . +.... .+.|. .+..++..-+.-++++.+.|.+.+...
T Consensus 159 ~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~ 238 (423)
T PRK09357 159 RLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSV 238 (423)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHH
Confidence 4566778889999999999987421 0 00000 11221 222222211233599999999877655
Q ss_pred HHHHHHHhC-CeeeecccccC------------------CCc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc----
Q 004052 277 EASYLAYVY-PQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET---- 332 (776)
Q Consensus 277 e~~~la~~~-pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~---- 332 (776)
+....+... -+|+.+++..+ |.. ++.+ ...|.++++.+ ....+|||..++...
T Consensus 239 ~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~l~~~l~~G--~~~~i~sDh~p~~~~~k~~ 315 (423)
T PRK09357 239 ELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEED-REALIEGLKDG--TIDAIATDHAPHAREEKEC 315 (423)
T ss_pred HHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHH-HHHHHHHHHcC--CCeEEecCCCCCChHHccC
Confidence 555555433 25655444311 111 1122 23455555533 233699996443311
Q ss_pred -cc---hhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCCC
Q 004052 333 -YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (776)
Q Consensus 333 -~~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (776)
+| .+-..+-..+..++...+.++.++.+ .+-+++..|++++++++.
T Consensus 316 ~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 316 EFEAAPFGITGLETALSLLYTTLVKTGLLDLE----QLLEKMTINPARILGLPA 365 (423)
T ss_pred CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCCC
Confidence 00 00000122233344456666778864 355566699999999853
No 60
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=84.54 E-value=13 Score=41.23 Aligned_cols=141 Identities=21% Similarity=0.180 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (776)
.|..+..+++.+... +|+.+|+... .+...+-.+++ +| ++++++.|+..- ...+..|+. .|+++.
T Consensus 178 ~d~~l~~l~~~~~~~-~~v~vHa~~~--------~~i~~~l~~~~--e~-g~~~~i~H~~~~-~~~~~~la~--~gv~v~ 242 (359)
T cd01309 178 RDLKLEALLPVLKGE-IPVRIHAHRA--------DDILTAIRIAK--EF-GIKITIEHGAEG-YKLADELAK--HGIPVI 242 (359)
T ss_pred CCccHHHHHHHHcCC-eeEEEEeCCH--------HHHHHHHHHHH--Hc-CCCEEEECchhH-HHHHHHHHH--cCCCEE
Confidence 455677777777655 9999998631 12333445555 45 678999999653 333444543 356555
Q ss_pred ccc--cCCCcc--HHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHH
Q 004052 292 FGL--AIPKLS--VQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (776)
Q Consensus 292 ~s~--~~~~~~--~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~ 367 (776)
++- +.+... .......++.+++.+| =++.++||...+| .+.+...+. ..+. ..++.. +..+
T Consensus 243 ~~P~~~~~~~~~~~~~~~~~~~~l~~aGG-v~valgsD~~~~~------~~~l~~~~~----~a~~-~gl~~~---~al~ 307 (359)
T cd01309 243 YGPTLTLPKKVEEVNDAIDTNAYLLKKGG-VAFAISSDHPVLN------IRNLNLEAA----KAVK-YGLSYE---EALK 307 (359)
T ss_pred ECccccccccHHHhhcchhhHHHHHHcCC-ceEEEECCCCCcc------chhHHHHHH----HHHH-cCCCHH---HHHH
Confidence 432 221110 0001123445555433 4688999953322 111221111 1122 236642 3444
Q ss_pred HHHHHhHHHHhCCCCC
Q 004052 368 DIFALNAAQFYKINLG 383 (776)
Q Consensus 368 ~Il~~NA~rly~l~~~ 383 (776)
. +-.|++++++++..
T Consensus 308 ~-~T~n~A~~lg~~~~ 322 (359)
T cd01309 308 A-ITINPAKILGIEDR 322 (359)
T ss_pred H-HHHHHHHHhCCCCC
Confidence 4 55889999998654
No 61
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=83.05 E-value=64 Score=35.17 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecC
Q 004052 211 LIDYIFISSLEVAQFLDLPLQIHTG 235 (776)
Q Consensus 211 l~d~~l~~l~e~a~e~glPvq~H~G 235 (776)
+.+..+..+++.+.++|+++.+|..
T Consensus 157 ~~~e~l~~~~~~A~~~g~~v~~H~~ 181 (342)
T cd01299 157 FSEEELRAIVDEAHKAGLYVAAHAY 181 (342)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4455678889999999999999986
No 62
>PLN02795 allantoinase
Probab=82.25 E-value=23 Score=41.47 Aligned_cols=163 Identities=17% Similarity=0.096 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCC---------CC-C---cCCcChh-----h---hHHHHHh----cCCCCcEEE
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDK---------DL-D---LRLSNPL-----H---LRAILED----KRFSKCRFV 266 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~---------~~-~---~~~~~P~-----~---L~~l~~~----~~~P~l~iv 266 (776)
++..+..+++.++++|+||.+|.-..+- +. + ...+.|. . +-.+++. ++-|+.++.
T Consensus 210 ~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lh 289 (505)
T PLN02795 210 TATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVH 289 (505)
T ss_pred CHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEE
Confidence 4456778889999999999999864210 00 0 0112332 2 2233331 244799999
Q ss_pred EeCCCCc-hHHHHHHHHHhCC-eeeecccccC------------------CCccHHHHHHHHHHHHHHCCCCcEEEecCC
Q 004052 267 LLHASYP-FSKEASYLAYVYP-QVYLDFGLAI------------------PKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (776)
Q Consensus 267 l~H~g~p-~~~e~~~la~~~p-NVyld~s~~~------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (776)
+.|.+.+ ...++...++... +|+.+++... |.+....-+..|-+.+..+-++ +.+||.
T Consensus 290 i~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id--~i~sDH 367 (505)
T PLN02795 290 IVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDID--MLSSDH 367 (505)
T ss_pred EEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCce--EEecCC
Confidence 9999876 6655555554433 6777665421 1110111233455555544445 689997
Q ss_pred CCCccc--------cc---hhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 327 YASPET--------YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 327 ~~~P~~--------~~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
-++... +| .+.-..-..+..++...++ +.+++. .+-.++..|.+++|+++
T Consensus 368 ap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~-~~l~l~----~~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 368 SPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRA-YGLTLE----QLARWWSERPAKLAGLD 428 (505)
T ss_pred CCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHHH-cCCCHH----HHHHHHHHHHHHHhCCC
Confidence 554310 00 0000011234444444454 447763 46677789999999983
No 63
>PRK07369 dihydroorotase; Provisional
Probab=81.29 E-value=24 Score=40.11 Aligned_cols=161 Identities=16% Similarity=0.025 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC--------CC---CCc-CCcChh-----hhHHHHHhcCCCCcEEEEeCCCCchHHH
Q 004052 215 IFISSLEVAQFLDLPLQIHTGFGD--------KD---LDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~gd--------~~---~~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~~e 277 (776)
.+..+++.++++|.++.+|.--.. .+ ... ..+.|. .+..++.--+.-+.++.+.|.+-+...+
T Consensus 163 ~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~ 242 (418)
T PRK07369 163 LLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVE 242 (418)
T ss_pred HHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 456667778888999999974210 00 000 112242 2222222113448999999998766655
Q ss_pred HHHHHHhCC-eeeecccccCCC------------------ccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc-----c
Q 004052 278 ASYLAYVYP-QVYLDFGLAIPK------------------LSVQGMISSIKELLELAPTKKVMFSTDAYASPET-----Y 333 (776)
Q Consensus 278 ~~~la~~~p-NVyld~s~~~~~------------------~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-----~ 333 (776)
+..-++... +|+.+++...-. +....-+..|-+.+..+-++ +.+||.-++... +
T Consensus 243 ~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id--~i~SDHaP~~~~~K~~~~ 320 (418)
T PRK07369 243 LIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVID--AIAIDHAPYTYEEKTVAF 320 (418)
T ss_pred HHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCC--EEEcCCCCCCHHHccCCH
Confidence 555554432 677776653211 10011123444555544445 689996544310 0
Q ss_pred c---hhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 334 F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 334 ~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
| .+.-..--.+..++...++.+.+++. .+-+++..|++|+|++.
T Consensus 321 ~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~----~~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 321 AEAPPGAIGLELALPLLWQNLVETGELSAL----QLWQALSTNPARCLGQE 367 (418)
T ss_pred hHCCCCceeHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHhHHHHhCCC
Confidence 0 01001112334455566777888863 46667789999999985
No 64
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=80.52 E-value=28 Score=39.77 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCC--------------CCCCc-CCcCh-----hhhHHHHHhcCCCCcEEEEeCCC
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNP-----LHLRAILEDKRFSKCRFVLLHAS 271 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd--------------~~~~~-~~~~P-----~~L~~l~~~~~~P~l~ivl~H~g 271 (776)
++..+.++++.|+++|+|+.+|+...+ .+... ....| ..+..++...+.-++++.+.|.+
T Consensus 160 ~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~s 239 (447)
T cd01315 160 DDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHLS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 445678889999999999999987421 00100 01122 12333332112346999999997
Q ss_pred CchHHHHHHHHHh-CCeeeecccccC------------------CCc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcc
Q 004052 272 YPFSKEASYLAYV-YPQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPE 331 (776)
Q Consensus 272 ~p~~~e~~~la~~-~pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~ 331 (776)
.+...+....+.. -.+|+++++... |.. +... +..+-+.++.+ ...+.+||..++..
T Consensus 240 ~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~-~~~l~~~l~~g--~i~~i~SDh~p~~~ 316 (447)
T cd01315 240 SAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAAN-QEQLWEALENG--DIDMVVSDHSPCTP 316 (447)
T ss_pred CHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHH-HHHHHHHHhCC--ceeEEeCCCCCCCH
Confidence 6655554444332 235665544321 111 1111 12222333321 23459999643321
Q ss_pred --------ccch---hhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 332 --------TYFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 332 --------~~~~---~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.++. +.-..-..+..++...++++.++.. .+-+.+-.|++++++++
T Consensus 317 ~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~pa~~~g~~ 373 (447)
T cd01315 317 ELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLE----DIARLMCENPAKLFGLS 373 (447)
T ss_pred HHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCC
Confidence 0000 0000111233344455666778864 34555667888889985
No 65
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=79.41 E-value=23 Score=40.21 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCC-----------CCCCc-CCcChh-----hhHHHHHhcCCCCcEEEEeCCCCch
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd-----------~~~~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~ 274 (776)
++..+..+++.++++|+|+.+|+-..+ .+... ..+.|. .+..++.-.+.-++++++.|.+.+.
T Consensus 145 ~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~ 224 (411)
T TIGR00857 145 DILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKE 224 (411)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHH
Confidence 444667788889999999999975320 01100 122342 2222222113458999999998766
Q ss_pred HHHHHHHHHhCC-eeeecccccC------------------CCc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--
Q 004052 275 SKEASYLAYVYP-QVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET-- 332 (776)
Q Consensus 275 ~~e~~~la~~~p-NVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-- 332 (776)
..++...+.... +|+.+++... |.+ +... +..|-+.+..+-.+ +.+||..+++..
T Consensus 225 ~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~L~~~l~~g~i~--~i~sDh~p~~~~~k 301 (411)
T TIGR00857 225 SLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKED-RLALIEGLKDGIID--IIATDHAPHTLEEK 301 (411)
T ss_pred HHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHH-HHHHHHHHhcCCCc--EEEcCCCCCChHHc
Confidence 555555554432 6777765422 111 1111 22344444433333 689996544210
Q ss_pred ------cchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 333 ------YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 333 ------~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.+.+.......+..++ ..+.++.++.. +++ +.+..|.+++++++
T Consensus 302 ~~~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~~~---~~~-~~~t~~pa~~~g~~ 351 (411)
T TIGR00857 302 TKEFAAAPPGIPGLETALPLLL-QLLVKGLISLK---DLI-RMLSINPARIFGLP 351 (411)
T ss_pred cCCHhhCCCCceeHHHHHHHHH-HHHHhCCCCHH---HHH-HHHhHHHHHHhCCC
Confidence 0011111112233333 33344567763 344 44557888888875
No 66
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=76.58 E-value=49 Score=37.17 Aligned_cols=110 Identities=17% Similarity=0.043 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhhC-CCcEEEecCCCCCCCCc---CC-cChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 213 DYIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RL-SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 213 d~~l~~l~e~a~e~-glPvq~H~G~gd~~~~~---~~-~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
+..+..+.+.+.++ |+|+.+|...+....+. .+ ..|..++.+.+. .+-+.++++.|+.+--..++..++..--+
T Consensus 185 ~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~-g~lg~~~~~~H~~~~~~~~~~~l~~~g~~ 263 (401)
T TIGR02967 185 PEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHY-GLLGRRSVFAHCIHLSDEECQRLAETGAA 263 (401)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHC-CCCCCCeEEEecccCCHHHHHHHHHcCCe
Confidence 44677788999999 99999999754211100 00 111122223331 33456889999965433444455543222
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (776)
|...+.. +.....| ...++++++. | -++.+|||+..
T Consensus 264 v~~~P~~--~~~~~~g-~~~~~~~~~~-G-v~v~lGtD~~~ 299 (401)
T TIGR02967 264 IAHCPTS--NLFLGSG-LFNLKKALEH-G-VRVGLGTDVGG 299 (401)
T ss_pred EEEChHH--HHHhccC-CCCHHHHHHC-C-CeEEEecCCCC
Confidence 2222111 0000001 1134555554 4 38999999643
No 67
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=73.35 E-value=14 Score=41.38 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=34.7
Q ss_pred CCCceEEecccc-hHHHhhhHHHHHHHHHHHHHHHcCCe
Q 004052 590 GKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLL 627 (776)
Q Consensus 590 ~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~G~~ 627 (776)
-.||+|++..|. +.-++++.+...+..++++|+++|+.
T Consensus 68 PGgQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~ 106 (390)
T TIGR03444 68 PGGQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLA 106 (390)
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 348999999997 67789999999999999999999996
No 68
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=72.25 E-value=49 Score=36.90 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=23.5
Q ss_pred HHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
+..++...++.+.++.. .+-+++..|+++++++.
T Consensus 292 l~~~~~~~~~~~~~~~~----~~~~~~t~npA~~lgl~ 325 (374)
T cd01317 292 LPLLWTLLVKGGLLTLP----DLIRALSTNPAKILGLP 325 (374)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 33344555666778863 46667789999999985
No 69
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=70.06 E-value=13 Score=31.41 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCCeeeeccCCCC------CceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecc
Q 004052 566 PVFQEVLADLHSLNISVEQLHAEAGK------GQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (776)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~p------GQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmp 632 (776)
.++.++.+.|.+.|++|..+..+.-+ ++|.+.+.-.-+ ...| .-.++.-+++++++.|+.++|.|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~~-~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGTD-LDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCCC-HHHHHHHHHHHHHHhcceEEecC
Confidence 47788999999999999998776554 788665555433 1223 56788889999999999988754
No 70
>PRK09061 D-glutamate deacylase; Validated
Probab=68.86 E-value=1.3e+02 Score=35.28 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHhhhhhccC-CCChhhHHHHHHHHHHHhHHHHhC
Q 004052 342 EVVFSVLRDTCIDE-DLSVGEAIEVAKDIFALNAAQFYK 379 (776)
Q Consensus 342 ~~l~~~l~~~v~~g-~l~~~ea~~~~~~Il~~NA~rly~ 379 (776)
..+.+++..+|.++ .+++. +++++ +-.|.+++|+
T Consensus 400 ~~~~~~l~~~v~~~~~isl~---~ai~~-~T~~pA~~lg 434 (509)
T PRK09061 400 GTFARFLREYVRERKALSLL---EAIRK-CTLMPAQILE 434 (509)
T ss_pred cchHHHHHHHHhhcccCCHH---HHHHH-HHHHHHHHhc
Confidence 34566677777764 58864 34444 4566677778
No 71
>PRK08044 allantoinase; Provisional
Probab=67.81 E-value=51 Score=37.90 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=24.0
Q ss_pred HHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
+..++...++++.+++.+ +-+.+..|++|+|+++
T Consensus 342 l~~~~~~~v~~~~l~~~~----~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 342 MDVMFDEAVQKRGMSLPM----FGKLMATNAADIFGLQ 375 (449)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHHHhHHHHhCCC
Confidence 344556677778898743 4555668999999984
No 72
>PRK09228 guanine deaminase; Provisional
Probab=67.48 E-value=99 Score=35.30 Aligned_cols=109 Identities=15% Similarity=-0.017 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhC-CCcEEEecCCCCCCCCc---CCc-ChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 213 DYIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RLS-NPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 213 d~~l~~l~e~a~e~-glPvq~H~G~gd~~~~~---~~~-~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
+..+..+.+.|.++ |+|+++|..-+...... .+. .|..++-+.+- .+-+-++++.|+.+--..++..|+..--+
T Consensus 210 ~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~-G~l~~~~~~~H~~~l~~~~~~~la~~g~~ 288 (433)
T PRK09228 210 PEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERY-GLLGPRAVFAHCIHLEDRERRRLAETGAA 288 (433)
T ss_pred HHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHc-CCCCCCeEEEeccCCCHHHHHHHHHcCCe
Confidence 34677788999998 99999999865322110 011 11122222222 23355889999965544555666654333
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
|-..+.. +.....| ...++++++.+ -++.+|||+.
T Consensus 289 v~~~P~s--n~~lg~g-~~~~~~~~~~G--v~v~lGtD~~ 323 (433)
T PRK09228 289 IAFCPTS--NLFLGSG-LFDLKRADAAG--VRVGLGTDVG 323 (433)
T ss_pred EEECCcc--HHhhcCC-CcCHHHHHHCC--CeEEEecCCC
Confidence 3332221 1000011 12345555543 4788999964
No 73
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=66.42 E-value=1.2e+02 Score=34.62 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhhCC-CcEEEecCCCCCCCCc---CC---cChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhC
Q 004052 213 DYIFISSLEVAQFLD-LPLQIHTGFGDKDLDL---RL---SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVY 285 (776)
Q Consensus 213 d~~l~~l~e~a~e~g-lPvq~H~G~gd~~~~~---~~---~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~ 285 (776)
+..+..+.+.|.++| +++++|...+...... .+ ..| ++.+.+. .+-+.++++.|+.+--..++..++..-
T Consensus 207 ~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p--~~~l~~~-G~l~~~~~l~H~~~l~~~~~~~l~~~g 283 (429)
T cd01303 207 EELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDY--LDVYDKY-GLLTEKTVLAHCVHLSEEEFNLLKERG 283 (429)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCH--HHHHHHC-CCCCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 345677788999999 9999999653211100 00 112 2222221 223568899999754444555565543
Q ss_pred CeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 286 PQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 286 pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
-+|...+..-. ....| ...++++++.+ -++.+|||+.
T Consensus 284 ~~v~~~P~sn~--~l~~g-~~~~~~~~~~G--v~v~lGtD~~ 320 (429)
T cd01303 284 ASVAHCPTSNL--FLGSG-LFDVRKLLDAG--IKVGLGTDVG 320 (429)
T ss_pred CEEEECccchh--hhccC-CCCHHHHHHCC--CeEEEeccCC
Confidence 33333222110 00011 12345555543 3588999964
No 74
>PRK07583 cytosine deaminase-like protein; Validated
Probab=65.99 E-value=88 Score=35.74 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCC
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS 271 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g 271 (776)
.+..+..+++.|.++|+|+.+|++..+... .. .+..+...+.. ..++-++++.|+.
T Consensus 210 ~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~--~~-~l~~~~~~~~~-~G~~~~v~i~H~~ 265 (438)
T PRK07583 210 LDAQLDRLFRLARERGLDLDLHVDETGDPA--SR-TLKAVAEAALR-NGFEGKVTCGHCC 265 (438)
T ss_pred HHHHHHHHHHHHHHhCCCcEEeECCCCCch--HH-HHHHHHHHHHH-hCCCCCEEEEecc
Confidence 445788999999999999999997532110 01 12233333322 4455679999985
No 75
>PRK08323 phenylhydantoinase; Validated
Probab=65.64 E-value=95 Score=35.52 Aligned_cols=32 Identities=6% Similarity=0.236 Sum_probs=21.4
Q ss_pred HHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 346 SVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 346 ~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.++...+..+.+++. .+-+++..|.+++|++.
T Consensus 345 ~l~~~~~~~~~~~~~----~~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 345 LLFSEGVMTGRITLN----RFVELTSTNPAKIFGLY 376 (459)
T ss_pred HHHHHHHHcCCCCHH----HHHHHHhhHHHHHhCCC
Confidence 344455566778863 35556678999999984
No 76
>PRK09059 dihydroorotase; Validated
Probab=64.85 E-value=80 Score=36.06 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCC---CCC--------Cc-CCcChh-----hhHHHHHhcCCCCcEEEEeCCCCch
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd---~~~--------~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~ 274 (776)
++..+..+++.+++.|.++.+|.--.+ .+. .+ ..+.|. .+..++.--+..+.++.+.|.+.+.
T Consensus 164 ~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~ 243 (429)
T PRK09059 164 NTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAE 243 (429)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHH
Confidence 344677788999999999999974321 000 00 112332 2222222124668999999998766
Q ss_pred HHHHHHHHHhC-CeeeecccccCCC------------------c-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--
Q 004052 275 SKEASYLAYVY-PQVYLDFGLAIPK------------------L-SVQGMISSIKELLELAPTKKVMFSTDAYASPET-- 332 (776)
Q Consensus 275 ~~e~~~la~~~-pNVyld~s~~~~~------------------~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-- 332 (776)
..++...++.. -+|+.+++...-. + ++.. +..|-+.+..+.++ +++||.-++...
T Consensus 244 ~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d-~~~L~~~l~~g~id--~i~sDh~p~~~~~K 320 (429)
T PRK09059 244 SAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDD-RVAMVEAVASGTID--IIVSSHDPQDVDTK 320 (429)
T ss_pred HHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHH-HHHHHHHHHcCCCc--EEEeCCCCCCHHHC
Confidence 65555555433 2677776643110 0 1111 22333333333222 366885444210
Q ss_pred ---cch---hhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 333 ---YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 333 ---~~~---~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
+|. +.-.+-..+.-++ ..+.++.+++. .+-+++..|++|+|+|.
T Consensus 321 ~~~~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~----~~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 321 RLPFSEAAAGAIGLETLLAAAL-RLYHNGEVPLL----RLIEALSTRPAEIFGLP 370 (429)
T ss_pred cCChhhCCCCcccHHHHHHHHH-HHHHcCCCCHH----HHHHHHhHHHHHHhCCC
Confidence 110 0001111222223 35667788864 35666777999999984
No 77
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=64.76 E-value=2.1 Score=46.57 Aligned_cols=97 Identities=16% Similarity=0.034 Sum_probs=75.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHhHhhhCCCCCcccCCCCCCcCCcccccccCCCCCcccccCCCCCCCCCccEEEEcCC
Q 004052 663 SSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSF 742 (776)
Q Consensus 663 ~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt~nSY~Rl~~~~~ap~~~~WG~~NR~a~iRi~~~~~~~~~~~~~~E~R~~ 742 (776)
++.++.+.+.+.+.+ |..++....+|..++|+|..+..|. .+||.+|+....+. .. .+ +..++...
T Consensus 257 aG~Htn~ST~~mr~~----~g~~~i~~a~~~ls~rh~~hi~~yd---p~~G~dN~rrltg~-hE----t~--~i~~Fs~G 322 (380)
T KOG0683|consen 257 AGCHTNFSTKEMREA----GGLKIIEEAIPKLSKRHREHIAAYD---PKGGKDNERRLTGR-HE----TG--SIDNFSWG 322 (380)
T ss_pred cccccccchhHHHhc----cCHHHHHHHhhhcchhhhhhhhhcC---ccCCccchhhhcCC-Cc----cc--cccccccc
Confidence 445666777888887 6677778888999999999998876 68999999998883 21 12 34455555
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhc-CCCCCCcC
Q 004052 743 DGCANPHLGLAAIIASGIDGLRR-LCLPEPIG 773 (776)
Q Consensus 743 d~~aNPYL~lAailaAGl~Gi~~-l~~p~p~~ 773 (776)
-+++|||+.++.+.+|+.+|..+ ..|-..++
T Consensus 323 vAnr~~siri~r~va~~~~Gy~edrrP~sN~D 354 (380)
T KOG0683|consen 323 VANRNPSIRIPRTVAAEGKGYFEDRRPSSNCD 354 (380)
T ss_pred cccCCceeeechhhhcccccccccCCCcCCCC
Confidence 56799999999999999999988 76655443
No 78
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=64.71 E-value=1.1e+02 Score=34.84 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeecccc
Q 004052 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~ 294 (776)
.+...++.+.++|+|+..|+- ++. ...|...++. -+.. .|..... .++.... -..+|+++..
T Consensus 122 ~l~~~i~~A~~~g~~v~~Ha~-g~~--------~~~L~a~l~a--Gi~~----dH~~~~~-eea~e~l--~~G~~i~i~~ 183 (422)
T cd01295 122 EMLAKIQAAKKAGKPVDGHAP-GLS--------GEELNAYMAA--GIST----DHEAMTG-EEALEKL--RLGMYVMLRE 183 (422)
T ss_pred HHHHHHHHHHhCCCEEEEeCC-CCC--------HHHHHHHHHc--CCCC----CcCCCcH-HHHHHHH--HCCCEEEEEC
Confidence 345556788899999999983 211 1234455542 2211 3764432 3333333 2577877653
Q ss_pred cCCCccHHHHHHHHHHHHHHCC---CCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHH
Q 004052 295 AIPKLSVQGMISSIKELLELAP---TKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371 (776)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~---~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~ 371 (776)
.+. ...++.+++..+ ..+++++||++ .|.. ... +-.+..++...++. .++. +.+-+...
T Consensus 184 g~~-------~~~~~~~~~~l~~~~~~~i~l~TD~~-~~~~-~~~----~g~~~~v~r~a~~~-g~s~----~eal~~aT 245 (422)
T cd01295 184 GSI-------AKNLEALLPAITEKNFRRFMFCTDDV-HPDD-LLS----EGHLDYIVRRAIEA-GIPP----EDAIQMAT 245 (422)
T ss_pred ccc-------HhhHHHHHHhhhhccCCeEEEEcCCC-Cchh-hhh----cchHHHHHHHHHHc-CCCH----HHHHHHHh
Confidence 221 112233333333 47999999974 3321 110 01111222222222 3665 34566677
Q ss_pred HhHHHHhCC
Q 004052 372 LNAAQFYKI 380 (776)
Q Consensus 372 ~NA~rly~l 380 (776)
.|++++|++
T Consensus 246 ~n~A~~~gl 254 (422)
T cd01295 246 INPAECYGL 254 (422)
T ss_pred HHHHHHcCC
Confidence 899999998
No 79
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=64.19 E-value=1.5e+02 Score=33.79 Aligned_cols=35 Identities=6% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCCC
Q 004052 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (776)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (776)
+..++.+.+.++.+++. .+-+++..|.+++|++..
T Consensus 345 l~~l~~~~v~~~~~~~~----~~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 345 MTLLFDEGVATGRITLE----KFVELTSTNPAKIFNMYP 379 (454)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHhhHHHHHcCCCC
Confidence 34445556666778864 466677789999999853
No 80
>PRK07213 chlorohydrolase; Provisional
Probab=63.77 E-value=1.8e+02 Score=32.39 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCCCCCC----cCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 004052 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (776)
Q Consensus 211 l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~----~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p 286 (776)
+.+..+..+++.|+++|+|+.+|.+-...... ..-..| ++.+.+.+-.|+ ++.|+.+--..+...|+..--
T Consensus 176 ~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~--v~~~~~~G~~~~---~i~H~~~~~~~~i~~la~~g~ 250 (375)
T PRK07213 176 YSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTE--IERLINLGFKPD---FIVHATHPSNDDLELLKENNI 250 (375)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCCh--HHHHHhcCCCCC---EEEECCCCCHHHHHHHHHcCC
Confidence 34457788999999999999999975421100 001123 333444322344 358986544455666665443
Q ss_pred eeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHH
Q 004052 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (776)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~ 366 (776)
+|.+.+..-... ..| ...++++++.+ =++.+|||+..+. ....+++.-. .. ....++.. ++.
T Consensus 251 ~v~~~P~sn~~l--~~g-~~~v~~l~~~G--v~v~lGTD~~~~~-----~~~~~~e~~~-~~----~~~~~~~~---~~l 312 (375)
T PRK07213 251 PVVVCPRANASF--NVG-LPPLNEMLEKG--ILLGIGTDNFMAN-----SPSIFREMEF-IY----KLYHIEPK---EIL 312 (375)
T ss_pred cEEECCcchhhh--ccC-CccHHHHHHCC--CEEEEeeCCCCCc-----hHhHHHHHHH-HH----HHhCcCHH---HHH
Confidence 444444321110 011 12355666544 3899999964321 1123332211 11 11135532 445
Q ss_pred HHHHHHhHHHHhCCC
Q 004052 367 KDIFALNAAQFYKIN 381 (776)
Q Consensus 367 ~~Il~~NA~rly~l~ 381 (776)
++.. .|++|.++++
T Consensus 313 ~~aT-~~gA~~lg~~ 326 (375)
T PRK07213 313 KMAT-INGAKILGLI 326 (375)
T ss_pred HHHH-HHHHHHhCCC
Confidence 5544 6777888875
No 81
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=62.55 E-value=89 Score=35.75 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=21.9
Q ss_pred HHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCC
Q 004052 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (776)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (776)
+..++...+.++.++.. .+-+.+-.|++++|++
T Consensus 337 l~~~~~~~~~~~~l~~~----~~~~~~t~~pA~~~g~ 369 (443)
T TIGR03178 337 LDVMFDEAVQKRGLPLE----DIARLMATNPAKRFGL 369 (443)
T ss_pred HHHHHHHHHHhcCCCHH----HHHHHHhHHHHHHcCC
Confidence 33344455667788863 3555666888889998
No 82
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=61.96 E-value=47 Score=29.67 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHhcCceeEEeeeeEEEEEeecccCCCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeeee
Q 004052 506 PREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQL 585 (776)
Q Consensus 506 pR~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~ 585 (776)
|...-+++++.+++ .|..+..-.++||+++-+. .+-++.+...+.+.|..|+..
T Consensus 2 ~~~~n~~vl~~L~~-~Gddl~~~r~ieh~~~f~~-------------------------~~~~~~f~~~~~~~g~~v~~~ 55 (104)
T PF06877_consen 2 QIIENREVLEALEE-DGDDLSKPRPIEHWFYFED-------------------------EEDAEKFAEELEKLGYEVESA 55 (104)
T ss_dssp HHHHHHHHHHHHHH-HT--TTS-EEEEEEEEES--------------------------HHHHHHHHHHHHHHS---B--
T ss_pred cHHHHHHHHHHHHh-cCCCCCCCeEEEEEEEeCC-------------------------HHHHHHHHHHHHHCCCEEEEe
Confidence 34456788888984 6999999999999987541 345677888899999999887
Q ss_pred cc--CCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCe
Q 004052 586 HA--EAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (776)
Q Consensus 586 h~--E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~ 627 (776)
.. |-+.+.|.+.+.....+...+-. -.-.-+-.+|+++|..
T Consensus 56 ~~~~~d~~~~~~~~~~~~~~~~~~~I~-~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 56 EEDEEDGDGPYCLDISREMVLDYEDIN-AITQELEDLAKEFGGE 98 (104)
T ss_dssp --B-SS-SSBEEEEEEEEE-S-HHHHH-HHHHHHHHHHHHHT-E
T ss_pred ecccCCCCceEEEEEEEecCCCHHHHH-HHHHHHHHHHHHhCcE
Confidence 75 67889999998886665543333 3333455677777654
No 83
>PRK08417 dihydroorotase; Provisional
Probab=61.89 E-value=1e+02 Score=34.68 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCC-----------CCCCCc-CCcChh-----hhHHHHHhcCCCCcEEEEeCCCCc
Q 004052 211 LIDYIFISSLEVAQFLDLPLQIHTGFG-----------DKDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYP 273 (776)
Q Consensus 211 l~d~~l~~l~e~a~e~glPvq~H~G~g-----------d~~~~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p 273 (776)
+++..+..+++.++++|+||.+|.--. ..+... ..+.|. .+..++.--+.-+.++.+.|.+-+
T Consensus 127 ~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 127 LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 344456667788888888888887431 000000 112232 222222211345789999999876
Q ss_pred hHHHHHHHHHhCC-eeeecccccCCCccHH---------------HHHHHHHHHHHHCCCCcE-EEecCCCCCccc----
Q 004052 274 FSKEASYLAYVYP-QVYLDFGLAIPKLSVQ---------------GMISSIKELLELAPTKKV-MFSTDAYASPET---- 332 (776)
Q Consensus 274 ~~~e~~~la~~~p-NVyld~s~~~~~~~~~---------------g~~~~l~~~le~~~~~ki-lfgSD~~~~P~~---- 332 (776)
...++..-++... +|..+++...-.+... .-+.....+.+..--+.| +++||.-+++..
T Consensus 207 ~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~ 286 (386)
T PRK08417 207 RSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL 286 (386)
T ss_pred HHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC
Confidence 5555444343322 5655555432111000 001112233333222445 589997655311
Q ss_pred -cc---hhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 333 -YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 333 -~~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
+| .+.-.+-..+.-++...+.++.++.. .+-..+..|.+++|+++
T Consensus 287 ~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~----~~~~~~t~~pA~~lgl~ 335 (386)
T PRK08417 287 AFDEAAFGIDSICEYFSLCYTYLVKEGIITWS----ELSRFTSYNPAQFLGLN 335 (386)
T ss_pred CHhHCCCCchHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 11 11112233344445556777888864 35666778999999985
No 84
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=60.21 E-value=1.3e+02 Score=33.44 Aligned_cols=140 Identities=24% Similarity=0.238 Sum_probs=66.1
Q ss_pred cEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCch--HHHHHHHHHhCCeeeecc-cccCCCc-cHHHH
Q 004052 229 PLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF--SKEASYLAYVYPQVYLDF-GLAIPKL-SVQGM 304 (776)
Q Consensus 229 Pvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~--~~e~~~la~~~pNVyld~-s~~~~~~-~~~g~ 304 (776)
|+.+|++.+.. ....+.++++..-...-.++..|+.... ..+...++..-..+.++. +...... ....
T Consensus 192 ~i~vH~~~~~~-------~l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~- 263 (388)
T PRK10657 192 IVHVHMGDGKK-------GLQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAP- 263 (388)
T ss_pred EEEEEeCCchH-------HHHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcccccCccCH-
Confidence 89999874211 1112323443223333367788875421 123333333222333342 2111000 0011
Q ss_pred HHHHHHHHHHCC-CCcEEEecCCCCCccccch--------hhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHH
Q 004052 305 ISSIKELLELAP-TKKVMFSTDAYASPETYFL--------GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAA 375 (776)
Q Consensus 305 ~~~l~~~le~~~-~~kilfgSD~~~~P~~~~~--------~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~ 375 (776)
...+.++++.+. .+|++++||...... .|. +.-.. ..+...+...+....++. +.+-+++-.|++
T Consensus 264 ~~~l~~~~~~G~~~d~v~l~tD~~~~~~-~~~~~g~~~~~g~~~~-~~l~~~~~~~~~~~gis~----~~~l~~aT~npA 337 (388)
T PRK10657 264 AEALKRALEAGVPLSRVTLSSDGNGSLP-KFDEDGNLVGLGVGSV-ESLLEEVRELVKDEGLPL----EDALKPLTSNVA 337 (388)
T ss_pred HHHHHHHHHcCCChhheEEECCCCCCCc-eeccCCCEeccCcCch-hhHHHHHHHHHHhcCCCH----HHHHHHHHHHHH
Confidence 245677777763 789999999522110 111 00000 111122223343345775 447778889999
Q ss_pred HHhCCCC
Q 004052 376 QFYKINL 382 (776)
Q Consensus 376 rly~l~~ 382 (776)
++|++..
T Consensus 338 ~~lg~~~ 344 (388)
T PRK10657 338 RFLKLNG 344 (388)
T ss_pred HHhCCCC
Confidence 9999853
No 85
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=59.97 E-value=12 Score=34.35 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=27.1
Q ss_pred ccceeeecccCCCCCCCCCCHHHHHHHHHHHHh-CC---CCCcCCchhhhhHHHHHHHHHHhhCCCcEEEecCCC
Q 004052 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLR-SG---KPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (776)
Q Consensus 167 vGfksv~~y~~Gl~~~~~~~~~ea~~~~~r~l~-~~---~~~~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~g 237 (776)
.|||+|+|-|-.-+-+..++.++ .+++.+ .| ....+....+....+..+.+...+...||.+|+..|
T Consensus 26 ~GfktVInlRpd~E~~~qp~~~~----~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 26 QGFKTVINLRPDGEEPGQPSSAE----EAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp CT--EEEE-S-TTSTTT-T-HHC----HHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred CCCcEEEECCCCCCCCCCCCHHH----HHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 68999999875433321122211 111111 11 011222233344445555566666777888888765
No 86
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=59.42 E-value=23 Score=29.75 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEe
Q 004052 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (776)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTF 630 (776)
-++.++...|.+.|.+|+..+.-.-.|+|-+.+.-.-+ .|..-..+..+++++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 37888999999999999999999899999887766544 557778999999999999998875
No 87
>PRK06189 allantoinase; Provisional
Probab=59.23 E-value=1.1e+02 Score=35.14 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=58.1
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHhC-CeeeecccccC------------------CCc-cHHHHHHHHHHHHHHCCCC
Q 004052 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTK 318 (776)
Q Consensus 259 ~~P~l~ivl~H~g~p~~~e~~~la~~~-pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~ 318 (776)
+..++++.+.|.+.+...++..-++.. .+|+.+++... |.+ +... +..|.+.++.+-
T Consensus 229 ~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~-~~~L~~~l~~G~-- 305 (451)
T PRK06189 229 QETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQ-KEELWRGLLAGE-- 305 (451)
T ss_pred HHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhh-HHHHHHHHhCCC--
Confidence 356788989998765444443333322 35666555422 111 1111 234444444322
Q ss_pred cEEEecCCCCCccc------cch---hhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 319 KVMFSTDAYASPET------YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 319 kilfgSD~~~~P~~------~~~---~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
-...+||..++... +|. +.-..-..+..++...+.++.+++. .+-.++-.|.+++|+++
T Consensus 306 i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~----~~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 306 IDMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLE----TIARLLATNPAKRFGLP 373 (451)
T ss_pred ceEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHH----HHHHHHhhhHHHHhCCC
Confidence 23599996443210 000 0000112233344555567778864 35556669999999984
No 88
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=58.15 E-value=53 Score=36.14 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=72.3
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchH---------HHHHHHHHhCC-eee
Q 004052 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEASYLAYVYP-QVY 289 (776)
Q Consensus 220 ~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~---------~e~~~la~~~p-NVy 289 (776)
.....++|+-| |+....+..+.++++ -.+.++|+-|.+ ++. .+...+.+... =|.
T Consensus 238 V~EMNRLGMmV-----------DLShvS~atm~~aL~---vS~APVIFSHSs-A~~vcns~rNVPDdVL~llk~NgGvVM 302 (419)
T KOG4127|consen 238 VFEMNRLGMMV-----------DLSHVSDATMRDALE---VSRAPVIFSHSS-AYSVCNSSRNVPDDVLQLLKENGGVVM 302 (419)
T ss_pred HHHHhhhhhee-----------ehhhcCHHHHHHHHH---hhcCceEeeccc-HHHHhcCccCCcHHHHHHHhhcCCEEE
Confidence 44455677665 333444555666666 457889999983 111 12233332222 233
Q ss_pred ecccccC----CCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhH---HHHHHHHHHhhhhhccCCCChhhH
Q 004052 290 LDFGLAI----PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAK---RAREVVFSVLRDTCIDEDLSVGEA 362 (776)
Q Consensus 290 ld~s~~~----~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~---~~r~~l~~~l~~~v~~g~l~~~ea 362 (776)
+.+..-| ..........++..+.+.+|.+.|-+|.|--+.|... .+-+ -+-. ++++..+++.+. +
T Consensus 303 Vnfy~~~isc~~~A~v~~v~~Hi~hIr~VaG~~hIGlGg~yDGi~~~P-kGLEDVSkYP~----LiaeLl~r~~~~-~-- 374 (419)
T KOG4127|consen 303 VNFYPGFISCSDRATVSDVADHINHIRAVAGIDHIGLGGDYDGIPRVP-KGLEDVSKYPD----LIAELLERGWWE-E-- 374 (419)
T ss_pred EEeecccccCCCcccHHHHHHHHHHHHHhhccceeeccCCcCCcCCCC-cchhhhhhhHH----HHHHHHhcCCcH-H--
Confidence 3222211 1111334566888889999999999999833322100 0001 1222 344555555544 2
Q ss_pred HHHHHHHHHHhHHHHhCC
Q 004052 363 IEVAKDIFALNAAQFYKI 380 (776)
Q Consensus 363 ~~~~~~Il~~NA~rly~l 380 (776)
|.+. ++++|..|+|+-
T Consensus 375 -E~~~-l~g~N~LRV~~~ 390 (419)
T KOG4127|consen 375 -ELIG-LAGGNLLRVFRQ 390 (419)
T ss_pred -HHHH-HhcchHHHHHHH
Confidence 3344 999999999974
No 89
>PRK08204 hypothetical protein; Provisional
Probab=56.96 E-value=1.5e+02 Score=33.82 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeeccc
Q 004052 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFG 293 (776)
Q Consensus 214 ~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s 293 (776)
..+..+++.+.++|+++++|...+..+ .....++.+.+. .+.+.++++.|+.+-...+...|+.. ++++-..
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~-----~~~~~~~~l~~~-g~~~~~~~i~H~~~~~~~~~~~la~~--g~~v~~~ 272 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWG-----ATPRGVEQLHDA-GLLGPDLNLVHGNDLSDDELKLLADS--GGSFSVT 272 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcc-----cCCCHHHHHHHC-CCCCCCeEEEecCCCCHHHHHHHHHc--CCCEEEC
Confidence 345677888999999999999754221 111223333332 34567788899976544455555543 2222221
Q ss_pred ccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
-..+.....+ ...++++++.+ =++.+|||+.
T Consensus 273 P~~~~~~g~~-~~~~~~~~~~G--v~v~lGtD~~ 303 (449)
T PRK08204 273 PEIEMMMGHG-YPVTGRLLAHG--VRPSLGVDVV 303 (449)
T ss_pred hHHHhhhcCC-CCcHHHHHhcC--CceeeccccC
Confidence 1100000001 11345555543 4788999964
No 90
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=56.48 E-value=82 Score=37.16 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=35.1
Q ss_pred CcEEEecCCCC------Cccc-cchhhHHHHHH-HHHHhhhhhc--------cCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 318 KKVMFSTDAYA------SPET-YFLGAKRAREV-VFSVLRDTCI--------DEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 318 ~kilfgSD~~~------~P~~-~~~~~~~~r~~-l~~~l~~~v~--------~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.|+++.||.+. ||+. .|+-++.+|+. |.+ +-.++. +.++++ +.+-++...|+++.|++.
T Consensus 376 ~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~-~~~~~~~~~~l~~~~Re~sL----~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 376 WRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLST-VHPWAAARSTLGGIDREYSL----YEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred ceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHh-cCHHHHhhcccccccCCCCH----HHHHHHHHHHHHHHhCCC
Confidence 69999999654 4432 23445556643 222 122221 234554 456677789999999985
No 91
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=55.41 E-value=64 Score=37.24 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHH
Q 004052 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLA 282 (776)
Q Consensus 211 l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la 282 (776)
+.+..+..+++.+.++|++|.+|.. |+...+. .--.++.+....-+++.+.++.|+......+...++
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~-gd~~i~~---~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~ 359 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAI-GDRAVDT---VLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFA 359 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEe-cHHHHHH---HHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHH
Confidence 4456788899999999999999995 3211100 000122233311123678899999654433333343
No 92
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.62 E-value=27 Score=30.18 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEeccc
Q 004052 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPK 633 (776)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpK 633 (776)
-++.++.+.|.+.|++|...+.-.-.|+|-+.+.-.-+ ...+..-.++.-+++++.+.|+..++-+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 47888999999999999999988888888776655533 12345778899999999999999998665
No 93
>PRK02382 dihydroorotase; Provisional
Probab=54.60 E-value=1.3e+02 Score=34.33 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=20.5
Q ss_pred hhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 350 DTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 350 ~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
..+.++.+++. .+-+.+..|.+++|+++
T Consensus 334 ~~~~~~~~~l~----~~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 334 AAVRKNRLPLE----RVRDVTAANPARIFGLD 361 (443)
T ss_pred HHHHcCCCCHH----HHHHHHhHHHHHHcCCC
Confidence 45677888864 35556669999999985
No 94
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=54.46 E-value=33 Score=42.18 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=27.5
Q ss_pred eeccCCCCCceEEecccch-HHHhhhHHHHHHHHHHHHH
Q 004052 584 QLHAEAGKGQFEIALGHTV-AAKAADNLIFTREVLRAVA 621 (776)
Q Consensus 584 ~~h~E~~pGQ~Ei~l~~~~-~l~aaD~~~~~r~~ik~vA 621 (776)
.+.+|..-.|.|+..+++. .-++.+.+...+.++.+.+
T Consensus 53 ~ittdfsesqlE~iTp~~~~~~~~~~~L~~l~~~~~~~~ 91 (752)
T PRK02471 53 YIQTDFSESQLELITPVADSIEEVYRFLGALHDVASRSL 91 (752)
T ss_pred CcCchhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3556777788888888864 4557777777777777777
No 95
>PRK00194 hypothetical protein; Validated
Probab=54.39 E-value=29 Score=30.05 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecc
Q 004052 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (776)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmp 632 (776)
-++.++.+.|.+.|++|..++.....|.|.+.+.-.-+ ...+..-.++.-+++++.+.|+.++|.+
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 80 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQH 80 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEh
Confidence 47889999999999999999998888888774443322 1123456778889999999999999854
No 96
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=52.43 E-value=1.2e+02 Score=35.29 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCc--CCcChhhhHHHHHhcCCCCcEEEEeCCCCchH---------HHHH
Q 004052 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEAS 279 (776)
Q Consensus 211 l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~--~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~---------~e~~ 279 (776)
..+..+..+.+.|.++|+|+++|+..++...+. .......++.+.+ ..+.+-++++.|+.+--. .+..
T Consensus 218 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~-~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~ 296 (488)
T PRK06151 218 CTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLAD-VGLLGPRLLIPHATYISGSPRLNYSGGDDLA 296 (488)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHH-cCCCCCCcEEEEEEEcCCccccccCCHHHHH
Confidence 445677888999999999999999655321100 0000111222222 234567889999854322 4455
Q ss_pred HHHHhCCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCC
Q 004052 280 YLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (776)
Q Consensus 280 ~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (776)
.++.. ++++...-..+.....+ ...++++++.+ -++.+|||+
T Consensus 297 ~la~~--g~~v~~~P~~~~~~g~~-~~p~~~l~~~G--v~v~lGtD~ 338 (488)
T PRK06151 297 LLAEH--GVSIVHCPLVSARHGSA-LNSFDRYREAG--INLALGTDT 338 (488)
T ss_pred HHHhc--CCEEEECchhhhhhccc-cccHHHHHHCC--CcEEEECCC
Confidence 55543 34443221111000001 12355555544 368899996
No 97
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=51.78 E-value=2.3e+02 Score=31.32 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=60.4
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhC-CeeeecccccCCC----------------c-cHHHHHHHHHHHHHHCCCCcEE
Q 004052 260 FSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPK----------------L-SVQGMISSIKELLELAPTKKVM 321 (776)
Q Consensus 260 ~P~l~ivl~H~g~p~~~e~~~la~~~-pNVyld~s~~~~~----------------~-~~~g~~~~l~~~le~~~~~kil 321 (776)
.-+.++++.|.+.+...++..-++.. .+|+.+++...-. + +++. +..|-+.+.. ++ +
T Consensus 146 ~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~~~d-r~aL~~~l~~--id--~ 220 (344)
T cd01316 146 LHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPTRED-QEALWENLDY--ID--C 220 (344)
T ss_pred HHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcCHHH-HHHHHHHHhc--CC--E
Confidence 44788888888766555544444433 2576666543211 1 1111 2233333321 22 5
Q ss_pred EecCCCCCccc------cchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 322 FSTDAYASPET------YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 322 fgSD~~~~P~~------~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.+||.-++... .+.+.-.+-..+.-++ ..|.+|.++++ ..-.++..|.+++|+|.
T Consensus 221 i~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~-~~v~~~~i~l~----~l~~~~s~nPAk~~gl~ 281 (344)
T cd01316 221 FATDHAPHTLAEKTGNKPPPGFPGVETSLPLLL-TAVHEGRLTIE----DIVDRLHTNPKRIFNLP 281 (344)
T ss_pred EEcCCCCCCHHHhcCCCCCCCcccHHHHHHHHH-HHHHcCCCCHH----HHHHHHHHhHHHHhCCC
Confidence 89996554321 0111111222233334 46788889874 47778889999999985
No 98
>PRK08418 chlorohydrolase; Provisional
Probab=51.46 E-value=2e+02 Score=32.55 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCC---C-----------------cCCcChh-hhHHHHHhcCCCCcEEEEeCCC
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDL---D-----------------LRLSNPL-HLRAILEDKRFSKCRFVLLHAS 271 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~---~-----------------~~~~~P~-~L~~l~~~~~~P~l~ivl~H~g 271 (776)
+..+..+.+.+.++|+|+++|..-+.... . .+...|. +|+.+ . ..+.++.|+.
T Consensus 189 ~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~-g-----~~~~~~~H~~ 262 (408)
T PRK08418 189 PILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELF-K-----GLRTLFTHCV 262 (408)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHh-C-----CCCeEEEecc
Confidence 34567778899999999999998631100 0 0011343 23322 1 2367899997
Q ss_pred CchHHHHHHHHHhCCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 272 YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 272 ~p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
+--..+...|+..--+|-.-+..-. .-..| ...++++++.+ =++.+|||+.
T Consensus 263 ~~~~~di~~la~~g~~v~~cP~sn~--~lg~g-~~p~~~~~~~G--i~v~lGtD~~ 313 (408)
T PRK08418 263 YASEEELEKIKSKNASITHCPFSNR--LLSNK-ALDLEKAKKAG--INYSIATDGL 313 (408)
T ss_pred cCCHHHHHHHHHcCCcEEECHhHHH--HhcCC-CccHHHHHhCC--CeEEEeCCCC
Confidence 7666677777764333322221100 00001 11345555543 4788999963
No 99
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=51.37 E-value=82 Score=36.09 Aligned_cols=107 Identities=17% Similarity=0.039 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (776)
+..+..+.+.+.++|+|+++|..-+...... .-..| ++.+.+ ..+.+-++++.|+.+--..+...|+..--.|
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~-~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v 289 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRP--VDYLED-LGWLGPDVWLAHCVHLDDAEIARLARTGTGV 289 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHH-cCCCCCCeEEEEEeCCCHHHHHHHHhcCCeE
Confidence 3456677888999999999998643211000 00122 112222 1344667889999655445555555432222
Q ss_pred eecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
..-+.. +.....+ ...++++++.+ -++.+|||+.
T Consensus 290 ~~~P~~--~~~l~~~-~~~~~~~~~~G--v~v~lGtD~~ 323 (451)
T PRK08203 290 AHCPCS--NMRLASG-IAPVRELRAAG--VPVGLGVDGS 323 (451)
T ss_pred EECcHH--hhhhccC-CCCHHHHHHCC--CeEEEecCCC
Confidence 221110 0000001 11355666644 3788999964
No 100
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.32 E-value=42 Score=27.99 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecc
Q 004052 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (776)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmp 632 (776)
-++.++.+.|.+.|++|+.++.-.-.|+|-+.+.-.-+ ...++-.++..+..++++.|+.++.-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 37888999999999999999777777887776544322 112466788999999999999988744
No 101
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=48.15 E-value=2.9e+02 Score=30.75 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=41.0
Q ss_pred HHHHHHHHHHC-CCCcEEEecCCCC-Cccccchhh------HHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHH
Q 004052 305 ISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGA------KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (776)
Q Consensus 305 ~~~l~~~le~~-~~~kilfgSD~~~-~P~~~~~~~------~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~r 376 (776)
...++.+++.. +.+|++++||+.. .|.....+. -.... +-..+...++.+.++.. .+-+++-.|+++
T Consensus 263 ~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~-~~~~~~~~v~~~~i~~~----~al~~~T~npA~ 337 (387)
T cd01308 263 SEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDT-LLREVREAVKCGDIPLE----VALRVITSNVAR 337 (387)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHH-HHHHHHHHHHhCCCCHH----HHHHHHHHHHHH
Confidence 45677777775 5689999999521 121100000 00111 11223344556678863 466777789999
Q ss_pred HhCCC
Q 004052 377 FYKIN 381 (776)
Q Consensus 377 ly~l~ 381 (776)
+|++.
T Consensus 338 ~lg~~ 342 (387)
T cd01308 338 ILKLR 342 (387)
T ss_pred HhCCC
Confidence 99985
No 102
>PRK13404 dihydropyrimidinase; Provisional
Probab=47.94 E-value=3e+02 Score=31.92 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.3
Q ss_pred HHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
+..++...+..+.++.. .+-+++..|++|+|++.
T Consensus 352 l~~ll~~~v~~~~ls~~----~~~~~~t~~pA~~lgl~ 385 (477)
T PRK13404 352 LPLLFSEGVVKGRISLN----RFVALTSTNPAKLYGLY 385 (477)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 34445555666678863 46667778999999984
No 103
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=47.77 E-value=1.5e+02 Score=33.87 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCC--c--CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLD--L--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~--~--~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (776)
+..+..+++.+.++|+++++|...+..... + .-..| ++.+.+. .+-+-++++.|+.+--..+...++.. ++
T Consensus 201 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~l~~r~~~~H~~~l~~~~~~~la~~--g~ 275 (443)
T PRK09045 201 DENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRP--LARLARL-GLLGPRLIAVHMTQLTDAEIALLAET--GC 275 (443)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHc--CC
Confidence 345677788999999999999865311100 0 00112 2222222 23345788889965434444555543 33
Q ss_pred eecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
.+-..-..+.....+ ...++++++.+ -++.+|||+.
T Consensus 276 ~i~~~P~~~~~~~~~-~~~~~~l~~~G--v~v~lGtD~~ 311 (443)
T PRK09045 276 SVVHCPESNLKLASG-FCPVAKLLQAG--VNVALGTDGA 311 (443)
T ss_pred eEEECHHHHhhhccC-CCcHHHHHHCC--CeEEEecCCC
Confidence 332111000000001 12355666533 3678999964
No 104
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=46.43 E-value=1.4e+02 Score=33.98 Aligned_cols=154 Identities=18% Similarity=0.104 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
.+..+..+.+.+.++|+++++|...+....+. .-..| ++.+.+. .+-+-++++.|+.+--..+...|+..--+
T Consensus 195 s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-Gll~~~~~~~H~~~l~~~d~~~la~~g~~ 271 (435)
T PRK15493 195 STELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRP--VEYAASC-GLFKRPTVIAHGVVLNDNERAFLAEHDVR 271 (435)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCcEEEEeecCCHHHHHHHHHcCCe
Confidence 34467788899999999999999754211100 01123 2222221 23456788999976545556666654333
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHH-HHHHhhhhhc--cCCCChhhHHH
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREV-VFSVLRDTCI--DEDLSVGEAIE 364 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~-l~~~l~~~v~--~g~l~~~ea~~ 364 (776)
|-..+.. +.....| ...++.+++.+ -++.+|||+..-. . ....+.+. +..++...+. ...++.. +
T Consensus 272 v~~~P~s--n~~l~~g-~~p~~~~~~~G--v~v~lGtD~~~~~---~-~~d~~~~~~~a~~~~~~~~~~~~~~~~~---~ 339 (435)
T PRK15493 272 VAHNPNS--NLKLGSG-IANVKAMLEAG--IKVGIATDSVASN---N-NLDMFEEMRIATLLQKGIHQDATALPVE---T 339 (435)
T ss_pred EEEChHH--HHHHhcC-cccHHHHHHCC--CeEEEccCccccC---C-CcCHHHHHHHHHHHHhhccCCCCcCCHH---H
Confidence 3222111 0000011 11345555543 4788999963211 0 11122221 1112222221 1235532 4
Q ss_pred HHHHHHHHhHHHHhCCC
Q 004052 365 VAKDIFALNAAQFYKIN 381 (776)
Q Consensus 365 ~~~~Il~~NA~rly~l~ 381 (776)
..++.. .|+++.++++
T Consensus 340 ~l~~aT-~~gA~~lg~~ 355 (435)
T PRK15493 340 ALTLAT-KGAAEVIGMK 355 (435)
T ss_pred HHHHHh-HHHHHHcCCC
Confidence 555554 7888888875
No 105
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=46.08 E-value=4.2e+02 Score=28.65 Aligned_cols=94 Identities=20% Similarity=0.081 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhCC-CcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCc-hH-HHHHHHHHh------C
Q 004052 215 IFISSLEVAQFLD-LPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-FS-KEASYLAYV------Y 285 (776)
Q Consensus 215 ~l~~l~e~a~e~g-lPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p-~~-~e~~~la~~------~ 285 (776)
.+.+.++.+.+.| +++.+|.|-. ..|..+.+.+. -. .--+.|+-+- .. .....++.. .
T Consensus 154 ~f~~~~~~ar~~g~l~~t~HaGE~--------~~~~~v~~~~~--~~---~~RIgHg~~~~~~p~~~~~l~~~~i~ie~C 220 (305)
T cd00443 154 DFYSYYEYARRLGLLGLTLHCGET--------GNREELLQALL--LL---PDRIGHGIFLLKHPELIYLVKLRNIPIEVC 220 (305)
T ss_pred HHHHHHHHHHHcCCcceEEeecCC--------CChHHHHHHHH--hc---cceeeceEecCCCHHHHHHHHHcCCEEEEC
Confidence 5678999999999 9999999953 23444445554 12 3345676221 11 222333322 1
Q ss_pred --CeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCc
Q 004052 286 --PQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASP 330 (776)
Q Consensus 286 --pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P 330 (776)
.|+++.....+ ....++.+++.+ -++..+||.+.+-
T Consensus 221 P~SN~~~~~~~~~-------~~hP~~~~~~~G--~~v~i~TDd~~~~ 258 (305)
T cd00443 221 PTSNVVLGTVQSY-------EKHPFMRFFKAG--LPVSLSTDDPGIF 258 (305)
T ss_pred cchhhhhcCCCCh-------hhChHHHHHHCC--CeEEEeCCCCccc
Confidence 24444433211 122466666654 3888999966543
No 106
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=45.72 E-value=4.3e+02 Score=29.43 Aligned_cols=140 Identities=12% Similarity=0.027 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCch-----H-----HHHHHHH
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF-----S-----KEASYLA 282 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~-----~-----~e~~~la 282 (776)
+..+....+.++++|+|+.+|.+-... ....+++. .-++ .++.|+.+.. . .+....+
T Consensus 172 ~~~l~~~~~~A~~~g~~v~iH~~e~~~----------~~~~~~~~-l~~g--~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 238 (379)
T PRK12394 172 LKPLTETLRIANDLRCPVAVHSTHPVL----------PMKELVSL-LRRG--DIIAHAFHGKGSTILTEEGAVLAEVRQA 238 (379)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCc----------cHHHHHHh-cCCC--CEEEecCCCCCCCcCCCCCCChHHHHHH
Confidence 345666788899999999999974321 12222321 1122 3568874311 1 1112222
Q ss_pred HhCCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhH
Q 004052 283 YVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA 362 (776)
Q Consensus 283 ~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea 362 (776)
...++++|...-- +...+ ..+.++++.+ .-..++|||.......... ..... .++.+.++ ..++..+
T Consensus 239 -~~~G~~~~~~~g~---s~~~~-~~~~~~l~~G-~~~~~lgTD~~~~~~~~~~-~~~l~----~~~~~~~~-~~~~~~~- 305 (379)
T PRK12394 239 -RERGVIFDAANGR---SHFDM-NVARRAIANG-FLPDIISSDLSTITKLAWP-VYSLP----WVLSKYLA-LGMALED- 305 (379)
T ss_pred -HhCCeEEEecCCc---cccch-HHHHHHHHCC-CCceEEECCCCCCCcccCc-cchHH----HHHHHHHH-cCCCHHH-
Confidence 3346887654421 11111 2334555443 2245789997553321111 11112 23333443 3477533
Q ss_pred HHHHHHHHHHhHHHHhCCC
Q 004052 363 IEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 363 ~~~~~~Il~~NA~rly~l~ 381 (776)
+=+..-.|++++++++
T Consensus 306 ---~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 306 ---VINACTHTPAVLMGMA 321 (379)
T ss_pred ---HHHHHHHHHHHHhCCC
Confidence 4445567888888985
No 107
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.10 E-value=48 Score=30.82 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=34.4
Q ss_pred ccceeeecccCCCCCCCCCCHHHHHHHHHHH-HhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEecCCC
Q 004052 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAED-LRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (776)
Q Consensus 167 vGfksv~~y~~Gl~~~~~~~~~ea~~~~~r~-l~~~~~~~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~g 237 (776)
.|||||+|-|-.-+-+-.++-++.++..+++ +. .....+....+...-+..+-++..+.+-||.-|+-.|
T Consensus 27 ~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrsG 97 (130)
T COG3453 27 LGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRSG 97 (130)
T ss_pred hccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecCC
Confidence 6899999976554443334433322222221 00 0111222222222233344456667788888887655
No 108
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=43.67 E-value=19 Score=38.98 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHhC-CCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEeccc
Q 004052 564 VSPVFQEVLADLHSL-NISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPK 633 (776)
Q Consensus 564 ~~~~~~~i~~~l~~~-Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpK 633 (776)
.+-|-..+++.|-++ -||=-.+..| + .+|.++.+|+-+|.+|...|..-||||-
T Consensus 248 lrGf~rAMvKtMt~alkiPHF~y~dE---------------I-n~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 248 LRGFSRAMVKTMTEALKIPHFGYVDE---------------I-NCDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred chhHHHHHHHHHHHHhcCCccccccc---------------c-ChHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 566778888888764 4543333332 2 4799999999999999999999999994
No 109
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=43.59 E-value=2.3e+02 Score=31.56 Aligned_cols=109 Identities=23% Similarity=0.231 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCC----cCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~----~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
.+..+..+++.|.++|+++.+|.+-...... ..-..+ ++.+.+. ...+.++++.|+.+--..+...++.. +
T Consensus 192 ~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~H~~~l~~~~~~~l~~~--g 266 (411)
T cd01298 192 SDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRP--VEYLEEL-GLLGPDVVLAHCVWLTDEEIELLAET--G 266 (411)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHc--C
Confidence 3446777889999999999999853210000 000112 2222221 34467788999865433333344332 3
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (776)
+.+-+.-..+.....+ ...++.+++.+ -++.+|||+..
T Consensus 267 i~~~~~p~~~~~~~~~-~~~~~~~~~~G--v~~~~GsD~~~ 304 (411)
T cd01298 267 TGVAHNPASNMKLASG-IAPVPEMLEAG--VNVGLGTDGAA 304 (411)
T ss_pred CeEEEChHHhhhhhhC-CCCHHHHHHCC--CcEEEeCCCCc
Confidence 4443221111000001 12456666643 25789999653
No 110
>PRK09230 cytosine deaminase; Provisional
Probab=43.15 E-value=2e+02 Score=32.79 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCc-------hHHHHHHHHHhC
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-------FSKEASYLAYVY 285 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p-------~~~e~~~la~~~ 285 (776)
...+..+++.|+++|+|+.+|.+-........ -..+..+++...+ +-++++.|+.+- ..+++..|+..-
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~---~~~~~~~~~~~gl-~~~v~~~H~~~l~~~~~~~~~~~~~~La~~g 269 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEIDDEQSRF---VETVAALAHREGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSG 269 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCcchHH---HHHHHHHHHHhCC-CCCEEEEecCchhcCCHHHHHHHHHHHHHcC
Confidence 44678899999999999999998642211100 0112233332233 457999999544 123444555321
Q ss_pred ------C--eeeecccccCCCcc-HHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 004052 286 ------P--QVYLDFGLAIPKLS-VQGMISSIKELLELAPTKKVMFSTDAYA 328 (776)
Q Consensus 286 ------p--NVyld~s~~~~~~~-~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (776)
| |+|+. ......+ ..|. ..++++++.+ =+|..|||+..
T Consensus 270 v~vv~cP~sn~~l~--~~~~~~p~~~g~-~pi~~l~~aG--v~V~lGTD~~~ 316 (426)
T PRK09230 270 INFVANPLVNIHLQ--GRFDTYPKRRGI-TRVKEMLEAG--INVCFGHDDVF 316 (426)
T ss_pred CeEEECcchhhhhc--CCCCCCCCCCCC-cCHHHHHHCC--CeEEEecCCCC
Confidence 1 34442 1111110 0121 2355666643 38889999644
No 111
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=42.83 E-value=1.9e+02 Score=32.74 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
.+..+..+++.+.++|+|+++|.+-+...... .-..|. ..+.+-.+-+-++++.|+.+--..+...++.. +
T Consensus 187 s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~---~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~--g 261 (424)
T PRK08393 187 SLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPV---VLLDEIGFLNEDVIAAHGVWLSSRDIRILASA--G 261 (424)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHH---HHHHHcCCCCCCcEEEEeecCCHHHHHHHHhc--C
Confidence 34567788899999999999999754211000 001232 11221122345778899854333444455532 3
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
+++...-..+.....|. ..++++++.+ -++.+|||+.
T Consensus 262 ~~v~~~P~sn~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 298 (424)
T PRK08393 262 VTVAHNPASNMKLGSGV-MPLRKLLNAG--VNVALGTDGA 298 (424)
T ss_pred CEEEECHHHHHhhccCC-CCHHHHHHCC--CcEEEecCCC
Confidence 43332211110000011 1345555544 5889999964
No 112
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=42.16 E-value=1.7e+02 Score=30.58 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=53.0
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeeccccc
Q 004052 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (776)
Q Consensus 216 l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~~ 295 (776)
+..+++.|.++|+|+++|.+...... ....++.+.+ ..|++ +.|+.+.-..+...++.. ++.+-..-.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~-----g~~~i~~~~~--~~~~~---i~H~~~l~~~~~~~la~~--g~~v~~~P~ 194 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV-----GMTDIERALD--LEPDL---LVHGTHLTDEDLELVREN--GVPVVLCPR 194 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC-----CchhHHHHHh--CCCCE---EEEcCCCCHHHHHHHHHc--CCcEEEChh
Confidence 78889999999999999997542110 1112445555 33433 479865444555555543 232222111
Q ss_pred CCCccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 004052 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (776)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (776)
.+.....| ...++++++.+ -++.+|||+..
T Consensus 195 sn~~l~~g-~~p~~~l~~~G--v~v~lGtD~~~ 224 (263)
T cd01305 195 SNLYFGVG-IPPVAELLKLG--IKVLLGTDNVM 224 (263)
T ss_pred hHHHhCCC-CCCHHHHHHCC--CcEEEECCCCc
Confidence 10000001 12355666654 58889999643
No 113
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.14 E-value=35 Score=35.81 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=41.2
Q ss_pred cCCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHH---HHHhcCCCCcEEEEeCC--CCchHH---
Q 004052 205 RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRA---ILEDKRFSKCRFVLLHA--SYPFSK--- 276 (776)
Q Consensus 205 ~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~---l~~~~~~P~l~ivl~H~--g~p~~~--- 276 (776)
.+....+. -+|+++.+++.|+||.+=||... ---++. +++ +--+-+++++|| +||-..
T Consensus 94 KIaS~dl~---n~~lL~~~A~tgkPvIlSTG~st---------l~EI~~Av~~~~--~~~~~~l~llHC~s~YP~~~e~~ 159 (241)
T PF03102_consen 94 KIASGDLT---NLPLLEYIAKTGKPVILSTGMST---------LEEIERAVEVLR--EAGNEDLVLLHCVSSYPTPPEDV 159 (241)
T ss_dssp EE-GGGTT----HHHHHHHHTT-S-EEEE-TT-----------HHHHHHHHHHHH--HHCT--EEEEEE-SSSS--GGG-
T ss_pred Eecccccc---CHHHHHHHHHhCCcEEEECCCCC---------HHHHHHHHHHHH--hcCCCCEEEEecCCCCCCChHHc
Confidence 34444444 35678889999999999999652 112222 332 235789999999 677432
Q ss_pred ---HHHHHHHhCCeeeecccc
Q 004052 277 ---EASYLAYVYPQVYLDFGL 294 (776)
Q Consensus 277 ---e~~~la~~~pNVyld~s~ 294 (776)
.+..|...|+ +-++.|-
T Consensus 160 NL~~i~~L~~~f~-~~vG~SD 179 (241)
T PF03102_consen 160 NLRVIPTLKERFG-VPVGYSD 179 (241)
T ss_dssp -TTHHHHHHHHST-SEEEEEE
T ss_pred ChHHHHHHHHhcC-CCEEeCC
Confidence 2456777888 5556654
No 114
>PRK06687 chlorohydrolase; Validated
Probab=40.93 E-value=1.9e+02 Score=32.72 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
.+..+..+++.|.++|+++++|.+-....... .-..|. +.+.+. .+-+-++++.|+.+.-..+...++..--+
T Consensus 194 s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~--~~l~~~-g~l~~~~~~~H~~~~~~~~~~~la~~g~~ 270 (419)
T PRK06687 194 SRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPL--AFLEEL-GYLDHPSVFAHGVELNEREIERLASSQVA 270 (419)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHH--HHHHHc-CCCCCCeEEEEEecCCHHHHHHHHHcCCe
Confidence 34457778899999999999999753111000 001121 112221 23345788899976555566666653222
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (776)
|-..+.. +.....|+ ..++++++.+ -++-+|||+
T Consensus 271 v~~~P~s--n~~l~~g~-~p~~~~~~~G--v~v~lGtD~ 304 (419)
T PRK06687 271 IAHNPIS--NLKLASGI-APIIQLQKAG--VAVGIATDS 304 (419)
T ss_pred EEECcHH--hhhhccCC-CcHHHHHHCC--CeEEEeCCC
Confidence 2211110 00000011 1345555543 367899996
No 115
>PRK09237 dihydroorotase; Provisional
Probab=39.13 E-value=5.8e+02 Score=28.30 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=60.8
Q ss_pred HHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCC--Cc---hH------HHHHHHHHhCCeeee
Q 004052 222 VAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS--YP---FS------KEASYLAYVYPQVYL 290 (776)
Q Consensus 222 ~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g--~p---~~------~e~~~la~~~pNVyl 290 (776)
++++.|+|+.+|.+-.. .....|..+++ ++ -++.|+- .+ .. .++... ...++|+
T Consensus 176 ~a~~~g~~v~~H~~~~~-------~~~~~l~~~l~----~g--~~~~H~~~~~~~~~~~~~~~~~~~a~~~--l~~G~~~ 240 (380)
T PRK09237 176 IAAEANLPLMVHIGNPP-------PSLEEILELLR----PG--DILTHCFNGKPNRILDEDGELRPSVLEA--LERGVRL 240 (380)
T ss_pred HHHhcCCCEEEEcCCCC-------CCHHHHHhhcc----CC--CEEEecCCCCCCCccCCCCcchHHHHHH--HHCCEEE
Confidence 34589999999987321 12223333333 22 2568882 21 00 111111 2248999
Q ss_pred cccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhh-HHHHHHHHHHhhhhhccCCCChhhHHHHHHHH
Q 004052 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGA-KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (776)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~-~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (776)
+++.-...... .....+++.. .....++||.+ |...+... ....+.+ ...++. .++. +.+-++
T Consensus 241 ~ig~g~~~~~~----~~~~~l~~~g-~~~~~l~tD~~--~~~~~~~~~~~l~~~~----~~~~~~-g~~~----~~al~~ 304 (380)
T PRK09237 241 DVGHGTASFSF----KVAEAAIAAG-ILPDTISTDIY--CRNRINGPVYSLATVM----SKFLAL-GMPL----EEVIAA 304 (380)
T ss_pred EecCCCCcccH----HHHHHHHHCC-CCceEEECCCC--CCCcccchHhHHHHHH----HHHHHh-CCCH----HHHHHH
Confidence 87621100111 1223344432 22226899953 32101111 1122333 233332 3664 446677
Q ss_pred HHHhHHHHhCCC
Q 004052 370 FALNAAQFYKIN 381 (776)
Q Consensus 370 l~~NA~rly~l~ 381 (776)
...|++++|+++
T Consensus 305 aT~n~A~~lgl~ 316 (380)
T PRK09237 305 VTKNAADALRLP 316 (380)
T ss_pred HHHHHHHHcCCC
Confidence 778999999984
No 116
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=38.92 E-value=5.2e+02 Score=29.48 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhCCCc-EEEecCCCCCCCC--cCCcCh-hhhHHHHHhcCCCCcEEEEeCCCC-c-----hHHHHHHHHHh
Q 004052 215 IFISSLEVAQFLDLP-LQIHTGFGDKDLD--LRLSNP-LHLRAILEDKRFSKCRFVLLHASY-P-----FSKEASYLAYV 284 (776)
Q Consensus 215 ~l~~l~e~a~e~glP-vq~H~G~gd~~~~--~~~~~P-~~L~~l~~~~~~P~l~ivl~H~g~-p-----~~~e~~~la~~ 284 (776)
.|..-++.|+++|.+ |.+|+|....... -.+..- ..|..++. +-.+++|++=+++. . ...++..+...
T Consensus 219 ~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la--~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~ 296 (413)
T PTZ00372 219 AFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHE--ETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL 296 (413)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHh--CcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence 455667889999997 8999997421100 000000 13444554 44568888877532 1 23445555543
Q ss_pred C---C--eeeecccccCCC---c-cHHHHHHHHHHHHHHCCCCcE--EEecCCCC
Q 004052 285 Y---P--QVYLDFGLAIPK---L-SVQGMISSIKELLELAPTKKV--MFSTDAYA 328 (776)
Q Consensus 285 ~---p--NVyld~s~~~~~---~-~~~g~~~~l~~~le~~~~~ki--lfgSD~~~ 328 (776)
. + .|-+|++-.|.. . ..++....+.++-+..|.++| |=..|+..
T Consensus 297 v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~ 351 (413)
T PTZ00372 297 VEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKS 351 (413)
T ss_pred cCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCC
Confidence 3 2 367888876521 1 234566677776677777776 57788643
No 117
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=38.73 E-value=2.5e+02 Score=31.26 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=57.8
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHhCCeeeecccccCCCccH------------------HHHHHHHHHHHHHCCCCcE
Q 004052 259 RFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSV------------------QGMISSIKELLELAPTKKV 320 (776)
Q Consensus 259 ~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~~~~~~~~------------------~g~~~~l~~~le~~~~~ki 320 (776)
+..+.++.+.|.+.+...+...-++ .+|+.+++...-.+.. ...+..|.+.++.+- ..
T Consensus 168 ~~~~~~~hi~Hvs~~~~~~~i~~~k--~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~--id 243 (361)
T cd01318 168 RRHGARLHICHVSTPEELKLIKKAK--PGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGR--ID 243 (361)
T ss_pred HHHCCCEEEEeCCCHHHHHHHHHhC--CCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCC--CC
Confidence 3678999999998765444333332 4677776653211100 111234444444332 22
Q ss_pred EEecCCCCCccc-----cc---hhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 321 MFSTDAYASPET-----YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 321 lfgSD~~~~P~~-----~~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
+++||.-++... +| .+.. ..+..-.++-.++.++.+++.+ +-+.+..|.+++|+++
T Consensus 244 ~i~SDh~P~~~~~k~~~~~~a~~G~~-g~e~~l~~~~~~v~~~~l~l~~----a~~~~t~nPA~~lgl~ 307 (361)
T cd01318 244 VIASDHAPHTLEEKRKGYPAAPSGIP-GVETALPLMLTLVNKGILSLSR----VVRLTSHNPARIFGIK 307 (361)
T ss_pred EEeeCCCCCCHHHccCChhhCCCCCc-cHHHHHHHHHHHHHcCCCCHHH----HHHHHhHHHHHHhCCC
Confidence 599995332210 00 0000 0111112233466677788743 5556667888999985
No 118
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=37.19 E-value=4.8e+02 Score=28.47 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=87.1
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCC--CCchH---HH-----HHHHHHhCCee
Q 004052 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFS---KE-----ASYLAYVYPQV 288 (776)
Q Consensus 219 l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~--g~p~~---~e-----~~~la~~~pNV 288 (776)
..+++...++|+++|.|-. |...+++++ ++-.-.| +.|| |.|.. .+ ....| .-..|
T Consensus 177 a~~ia~~~klPlmvHigeP----------p~~~dEvle--rL~~GDI-itHcfngkpn~~l~~dg~vr~~vrra-~erGV 242 (386)
T COG3964 177 ALRIANDLKLPLMVHIGEP----------PVLMDEVLE--RLRRGDI-ITHCFNGKPNTILTDDGVVRAEVRRA-RERGV 242 (386)
T ss_pred HHHHHhhcCCceEEecCCC----------CccHHHHHH--hccCCce-eeeeccCCCCCccccchhHHHHHHHH-Hhcce
Confidence 3567788999999999842 445678887 4544443 3566 33321 11 11222 23579
Q ss_pred eecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHH
Q 004052 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (776)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (776)
-+|.+---...+. ..-+.++..+- --...+||-+.+-...|+-.. .--.+.++|. -.+++. ++++.
T Consensus 243 ~fD~ghG~asfsf----~vAr~aia~Gl-lP~~ISSDlh~~~~~n~Pv~d-la~~mSKlla-----lgmpl~---~Vi~a 308 (386)
T COG3964 243 IFDAGHGRASFSF----NVARRAIANGL-LPDIISSDLHTITKLNGPVYD-LAWIMSKLLA-----LGMPLT---DVINA 308 (386)
T ss_pred EEEccCCcceeeH----HHHHHHHhcCC-CcceeeccceeeeecCchHHH-HHHHHHHHHH-----cCCcHH---HHHHH
Confidence 9998753322222 23344444332 334569996654433343322 1123334433 135653 45554
Q ss_pred HHHHhHHHHhCCCCCccccCCcchhhHhhhhhhhhccCCceEEEEEEecCCC-CcceEE
Q 004052 369 IFALNAAQFYKINLGVKDFASKDDMHQIYLKKSDAFESDVSLIRVIWVDASG-QHRCRV 426 (776)
Q Consensus 369 Il~~NA~rly~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~D~~G-~~r~k~ 426 (776)
+ -.|++++.+++..-. ++.- ....+..|-+++.. +.|+|..| .++.+.
T Consensus 309 v-T~npA~~i~l~~~gt-La~G---~~aD~tvf~lk~~~-----~e~vDa~gdsl~a~~ 357 (386)
T COG3964 309 V-THNPAVLIGLAEIGT-LAPG---AFADITVFKLKNRH-----VEFVDAHGDSLTATH 357 (386)
T ss_pred H-hcCHHHHhCccccCc-cCCC---cccceEEEEeccCc-----eEEEeccCchhehhe
Confidence 4 579999999863211 1000 00111123334444 67889988 455553
No 119
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=37.10 E-value=6e+02 Score=27.91 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEecCC
Q 004052 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF 236 (776)
Q Consensus 186 ~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~ 236 (776)
++++..+.+.+..... ....+..+..+++.|.++|+|+..|...
T Consensus 142 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~iv~~A~~~gl~vasH~d~ 185 (325)
T cd01306 142 SDEEVEEAILERKARA-------AAYAPANRSELAALARARGIPLASHDDD 185 (325)
T ss_pred CHHHHHHHHHHHHHHh-------hhcCHHHHHHHHHHHHHCCCcEEEecCC
Confidence 5677777766655531 1122345678899999999999999863
No 120
>PRK06886 hypothetical protein; Validated
Probab=36.87 E-value=4.9e+02 Score=28.67 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHH----HhcCCCCcEEEEeCCC
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAIL----EDKRFSKCRFVLLHAS 271 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~----~~~~~P~l~ivl~H~g 271 (776)
+..+..++++|+++|+||.+|+..++.. ....++.+. +. .+-+ ++++.|+.
T Consensus 161 ~e~l~~~~~lA~~~g~~Id~Hlde~~~~------~~~~le~l~~~~~~~-Gl~g-rV~~sH~~ 215 (329)
T PRK06886 161 LEAMDILLDTAKSLGKMVHVHVDQFNTP------KEKETEQLCDKTIEH-GMQG-RVVAIHGI 215 (329)
T ss_pred HHHHHHHHHHHHHcCCCeEEeECCCCch------hHHHHHHHHHHHHHc-CCCC-CEEEEEec
Confidence 3457788999999999999999865311 012233333 32 3443 79999983
No 121
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=36.70 E-value=2.6e+02 Score=31.31 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCc----------------------CCcChhhhHHHHHhcCCCCcEEEEeCCC
Q 004052 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDL----------------------RLSNPLHLRAILEDKRFSKCRFVLLHAS 271 (776)
Q Consensus 214 ~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----------------------~~~~P~~L~~l~~~~~~P~l~ivl~H~g 271 (776)
..+..+.+.|+++|+|+++|..-+..+... .-..|. +.+.+. .+-+-++++.|+.
T Consensus 163 e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv--~~l~~~-g~L~~~~~~~H~~ 239 (381)
T cd01312 163 ELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAI--DFLDML-GGLGTRVSFVHCV 239 (381)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHH--HHHHHc-CCCCCCcEEEECC
Confidence 456677888999999999998753111000 011232 222221 2334578899997
Q ss_pred CchHHHHHHHHHhCCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 004052 272 YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (776)
Q Consensus 272 ~p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (776)
+--..+...++..--.|-.-+. .+.....| ...++++++.+ -++.+|||+..
T Consensus 240 ~l~~~~~~~l~~~g~~v~~~P~--sn~~lg~g-~~p~~~~~~~G--v~v~lGtD~~~ 291 (381)
T cd01312 240 YANLEEAEILASRGASIALCPR--SNRLLNGG-KLDVSELKKAG--IPVSLGTDGLS 291 (381)
T ss_pred cCCHHHHHHHHHcCCeEEECcc--hhhhhcCC-CcCHHHHHHCC--CcEEEeCCCCc
Confidence 6555566666654222211111 11000001 12345555543 47889999643
No 122
>PRK06361 hypothetical protein; Provisional
Probab=35.37 E-value=2.2e+02 Score=28.80 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=52.8
Q ss_pred EEEeCCCCchHHHHHHHHHhCCeeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHH
Q 004052 265 FVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVV 344 (776)
Q Consensus 265 ivl~H~g~p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l 344 (776)
-|++|+++.. .+....+ .-.++|+++...... .......++ +....+ -+++.|||++ -|+... .++.
T Consensus 115 dvlaHpd~~~-~~~~~~~-~~~~~~lEin~~~~~--~~~~~~~l~-~a~~~g-i~vv~~SDaH-~~~d~~----~~~~-- 181 (212)
T PRK06361 115 DILAHPGLIT-EEEAELA-AENGVFLEITARKGH--SLTNGHVAR-IAREAG-APLVINTDTH-APSDLI----TYEF-- 181 (212)
T ss_pred cEecCcchhh-HHHHHHH-HHcCeEEEEECCCCc--ccchHHHHH-HHHHhC-CcEEEECCCC-CHHHHH----HHHH--
Confidence 6789997643 3444333 334788887642111 111122344 344445 3489999988 454221 1221
Q ss_pred HHHhhhhhccCCCChhhHHHHHHHHHHHhHHHHhC
Q 004052 345 FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (776)
Q Consensus 345 ~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~ 379 (776)
+....++..++. +.+.+++-.|.+++++
T Consensus 182 ---~~~i~~~~gl~~----~~v~~~~~~~~~~~~~ 209 (212)
T PRK06361 182 ---ARKVALGAGLTE----KELEEALENNPKLLLK 209 (212)
T ss_pred ---HHHHHcCCCCCH----HHHHHHHHHhHHHHHH
Confidence 222334445653 6788999999999875
No 123
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=34.64 E-value=5.5e+02 Score=30.34 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHhCCC
Q 004052 364 EVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 364 ~~~~~Il~~NA~rly~l~ 381 (776)
+.+-.++..|.+++|+++
T Consensus 430 eei~~mtT~nPAKiLGL~ 447 (541)
T cd01304 430 YEIAIMTRAGPAKLLGLS 447 (541)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 347777889999999985
No 124
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=34.30 E-value=5.1e+02 Score=28.52 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.1
Q ss_pred CCChhhHHHHHHHHHHHhHHHHhCCC
Q 004052 356 DLSVGEAIEVAKDIFALNAAQFYKIN 381 (776)
Q Consensus 356 ~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (776)
.++. +.+-+....|++++|+++
T Consensus 292 g~~~----~ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 292 GYSL----EEVIEKVTKNAAEILKLT 313 (365)
T ss_pred CCCH----HHHHHHHHHHHHHHhCCC
Confidence 4775 346777889999999985
No 125
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=33.11 E-value=91 Score=29.43 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=11.9
Q ss_pred ccceeeecccCCCCCC
Q 004052 167 VGLKSIAAYRSGLEIN 182 (776)
Q Consensus 167 vGfksv~~y~~Gl~~~ 182 (776)
.|||+|++.|.--+..
T Consensus 26 ~GiktVIdlR~~~E~~ 41 (135)
T TIGR01244 26 LGFKTVINNRPDREEE 41 (135)
T ss_pred CCCcEEEECCCCCCCC
Confidence 5799999988765544
No 126
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=32.74 E-value=1.4e+02 Score=25.12 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEec
Q 004052 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (776)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFm 631 (776)
-++.++.+.|.+.|.+|.....=.-.|+|-+.+....+ .+..-.++..++.+++++|+.++.+
T Consensus 13 GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 13 GILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred hHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 47888999999999999988887788888776666533 2356678888999999999988753
No 127
>PTZ00124 adenosine deaminase; Provisional
Probab=31.18 E-value=97 Score=34.62 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHhhcc---ccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCC---CCCcCCchhhhhHHHHHHH
Q 004052 147 TLDVFIETFLKQLRSAAN---KIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG---KPVRITNKSLIDYIFISSL 220 (776)
Q Consensus 147 ~~~~~~~al~~~l~~~~~---~~vGfksv~~y~~Gl~~~~~~~~~ea~~~~~r~l~~~---~~~~~~~~~l~d~~l~~l~ 220 (776)
+++++++++.+.++.+.. .-+..+-|.|-.... +++.+.+.++-+++-. .+..+.+.+.....+.+++
T Consensus 139 ~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~------~~e~a~e~~~~a~~~~~~vvGiDLaG~E~~~~~f~~~f 212 (362)
T PTZ00124 139 DIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGH------DAAPIKESADFCLKHKADFVGFDHAGHEVDLKPFKDIF 212 (362)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCC------CHHHHHHHHHHHHhccCCeEEEeccCCCCCcHHHHHHH
Confidence 467777777777765422 234455566543322 3445555555554421 1122222222224578999
Q ss_pred HHHhhCCCcEEEecCC
Q 004052 221 EVAQFLDLPLQIHTGF 236 (776)
Q Consensus 221 e~a~e~glPvq~H~G~ 236 (776)
+.|.+.|+++.+|.|-
T Consensus 213 ~~Ar~~Gl~~t~HaGE 228 (362)
T PTZ00124 213 DYVREAGVNLTVHAGE 228 (362)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 9999999999999995
No 128
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=30.95 E-value=82 Score=25.86 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCeeeeccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCC
Q 004052 569 QEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGL 626 (776)
Q Consensus 569 ~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~ 626 (776)
+++.+.|..+|+.++. .+ ..+++++..++-.. ++...-.++-+||+-+|+
T Consensus 22 ~ei~~~L~~lg~~~~~--~~-~~~~~~v~~P~~R~-----Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 22 EEIEEILKRLGFEVEV--SG-DDDTLEVTVPSYRF-----DILIEADLIEEVARIYGY 71 (71)
T ss_pred HHHHHHHHHCCCeEEe--cC-CCCeEEEECCCCcc-----ccCcccHHHHHHHHHhCC
Confidence 5789999999999964 11 14678887777432 333444568888888886
No 129
>PRK06380 metal-dependent hydrolase; Provisional
Probab=30.72 E-value=6.6e+02 Score=28.24 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCC----cCCcChh-hhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPL-HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~----~~~~~P~-~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
+..+..+.+.+.++|+++++|...+..... ..-..|. +++.+ .+-+.++++.|+.+.-..+...++..--.
T Consensus 185 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~----g~l~~~~~~~H~~~l~~~d~~~la~~g~~ 260 (418)
T PRK06380 185 DETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKI----GFLNSKLIAAHCVWATYHEIKLLSKNGVK 260 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHC----CCCCCCeEEEEeecCCHHHHHHHHHcCCE
Confidence 346777889999999999999976421110 0011221 22211 12245789999976544455555543222
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
|-..+..-.. ....| ...++++++.+ =++.+|||+.
T Consensus 261 v~~~P~sn~~-l~~~g-~~p~~~~~~~G--v~v~lGTD~~ 296 (418)
T PRK06380 261 VSWNSVSNFK-LGTGG-SPPIPEMLDNG--INVTIGTDSN 296 (418)
T ss_pred EEECHHHHHh-hccCC-CCcHHHHHHCC--CeEEEcCCCC
Confidence 2222111000 00001 12355666644 3688999964
No 130
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=30.61 E-value=7.6e+02 Score=27.99 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (776)
+..+..+.+.+.++|+++++|........+. .-..| +..+.+. ...+-++++.|+.+--..++..++.. ++
T Consensus 198 ~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~~~~~~~l~H~~~~~~~~~~~~~~~--g~ 272 (445)
T PRK07228 198 EELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRN--IHYLDEV-GLTGEDLILAHCVWLDEEEREILAET--GT 272 (445)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHC-CCCCCCcEEEEEecCCHHHHHHHHHc--CC
Confidence 3456777889999999999999532110000 00112 2222221 23355788999965433444444433 33
Q ss_pred eecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
.+-..-..+.....+ ...++++++.+ -++.+|||+.
T Consensus 273 ~v~~~P~~~~~~~~~-~~p~~~~~~~G--v~v~lGtD~~ 308 (445)
T PRK07228 273 HVTHCPSSNLKLASG-IAPVPDLLERG--INVALGADGA 308 (445)
T ss_pred eEEEChHHhhhcccc-cCcHHHHHHCC--CeEEEcCCCC
Confidence 332111111000011 12455666543 4677999964
No 131
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=30.30 E-value=3.5e+02 Score=30.77 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
.+..+..+.+.|.++|+|+++|..-....... .-..| ++.+.+ -.+-+-++++.|+.+--..+...++.. +
T Consensus 188 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~--i~~l~~-~g~l~~r~~~~H~~~l~~~~~~~la~~--g 262 (430)
T PRK06038 188 SEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCS--VNYLDD-IGFLGPDVLAAHCVWLSDGDIEILRER--G 262 (430)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCH--HHHHHH-cCCCCCCeEEEEEecCCHHHHHHHHhc--C
Confidence 34567788899999999999999754211000 00122 111222 134466888999965555555555542 2
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
+.+-..-..+.....+ ...++++++.+ =++.+|||+.
T Consensus 263 ~~v~~~P~~n~~~~~~-~~p~~~~~~~G--v~v~lGtD~~ 299 (430)
T PRK06038 263 VNVSHNPVSNMKLASG-IAPVPKLLERG--VNVSLGTDGC 299 (430)
T ss_pred CEEEEChHHhhhhccC-CCCHHHHHHCC--CeEEEeCCCC
Confidence 2222111111000001 12356666643 3688999953
No 132
>PRK06846 putative deaminase; Validated
Probab=28.92 E-value=6e+02 Score=28.56 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCC----CC-cCCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEE
Q 004052 191 EEGLAEDLRSGK----PV-RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRF 265 (776)
Q Consensus 191 ~~~~~r~l~~~~----~~-~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~i 265 (776)
...++++++.+. +. ...........+..++++++++|+|+.+|+........... ..+-+.+++..+-. ++
T Consensus 178 ~~lL~~al~~Ga~~i~gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~---~~~~~~~~~~gl~~-~v 253 (410)
T PRK06846 178 EPLMREAMKMGAHLVGGVDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATI---KYLVETTEEAQWKG-KV 253 (410)
T ss_pred HHHHHHHHHcCCCEEeCCCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHH---HHHHHHHHHhCCCC-CE
Confidence 455677776541 11 11111223346788999999999999999975421100000 11223333223434 88
Q ss_pred EEeCCCC
Q 004052 266 VLLHASY 272 (776)
Q Consensus 266 vl~H~g~ 272 (776)
.+.|+.+
T Consensus 254 ~~~H~~~ 260 (410)
T PRK06846 254 TISHAFA 260 (410)
T ss_pred EEEecch
Confidence 9999953
No 133
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=28.69 E-value=36 Score=30.44 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHHhCCCCeeeeccCCCCCceEEeccc
Q 004052 573 ADLHSLNISVEQLHAEAGKGQFEIALGH 600 (776)
Q Consensus 573 ~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~ 600 (776)
+.-.++|=+||++.-+ +|||||||+.-
T Consensus 52 de~~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 52 DEDGAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred chhhcccCcceEEEEe-cCceEEEehhh
Confidence 4445677788888876 89999999854
No 134
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.52 E-value=36 Score=37.48 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHH---HHHhcCCCCcEEEEeCC--CCchHHH------HHHHHHhC
Q 004052 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRA---ILEDKRFSKCRFVLLHA--SYPFSKE------ASYLAYVY 285 (776)
Q Consensus 217 ~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~---l~~~~~~P~l~ivl~H~--g~p~~~e------~~~la~~~ 285 (776)
+|+++.+++.|+||.+=||.. +..-+.. .++...-++-+|+++|| +||...+ ...|...|
T Consensus 123 ~pLL~~~A~~gkPvilStGma---------tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f 193 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGMA---------TLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF 193 (329)
T ss_pred HHHHHHHHhcCCcEEEECCCC---------CHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh
Confidence 567888899999999999964 1211222 22211112225999999 4776443 23445556
Q ss_pred Ceeeec
Q 004052 286 PQVYLD 291 (776)
Q Consensus 286 pNVyld 291 (776)
+ +=++
T Consensus 194 ~-~pVG 198 (329)
T TIGR03569 194 D-LPVG 198 (329)
T ss_pred C-CCEE
Confidence 3 4343
No 135
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.26 E-value=47 Score=36.52 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCC--CCchHHH
Q 004052 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFSKE 277 (776)
Q Consensus 217 ~~l~e~a~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~--g~p~~~e 277 (776)
+|+++.+++.|+||.+=+|... ...-...-+.+.. .-+-+|+++|| +||..++
T Consensus 124 ~~LL~~va~~gkPvilstG~~t------~~Ei~~Av~~i~~--~g~~~i~LlhC~s~YP~~~~ 178 (327)
T TIGR03586 124 LPLIRYVAKTGKPIIMSTGIAT------LEEIQEAVEACRE--AGCKDLVLLKCTSSYPAPLE 178 (327)
T ss_pred HHHHHHHHhcCCcEEEECCCCC------HHHHHHHHHHHHH--CCCCcEEEEecCCCCCCCcc
Confidence 5677888899999999999641 0111111122221 11246999999 5776443
No 136
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=28.21 E-value=6.4e+02 Score=27.61 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCC
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~ 236 (776)
...+..+++.|.++|+++.+|.+.
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e 215 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADE 215 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcC
Confidence 446778899999999999999974
No 137
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=28.19 E-value=6.2e+02 Score=27.86 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCC
Q 004052 215 IFISSLEVAQFLDLPLQIHTGF 236 (776)
Q Consensus 215 ~l~~l~e~a~e~glPvq~H~G~ 236 (776)
.+..+++.|.++|+|+.+|.+.
T Consensus 198 ~~~~~~~~A~~~g~~v~~H~~e 219 (377)
T TIGR01224 198 QSRRILQAAQEAGLPVKLHAEE 219 (377)
T ss_pred HHHHHHHHHHHCCCCEEEEecC
Confidence 5677889999999999999974
No 138
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=27.85 E-value=1.1e+02 Score=35.09 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCc---CC-cChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL---RL-SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~---~~-~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (776)
+..+..+.++|+++|+|+++|.+.+...... .+ ..| ++.+.+. .+=+-++++.|+.+.-..+...|+..--+|
T Consensus 204 ~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~--v~~l~~~-Gll~~~~~~~H~~~~~~~d~~~la~~g~~v 280 (442)
T PRK07203 204 DATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDI--VERLADF-GLLGEKTLAAHCIYLSDEEIDLLKETDTFV 280 (442)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCH--HHHHHhC-CCCCCCcEEEEeecCCHHHHHHHHhcCCeE
Confidence 3467778899999999999999865221100 00 123 2222222 233557889999765555666666543232
Q ss_pred eecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
=..+.. +.....| ...+.++++.+- ++-.|||+.
T Consensus 281 ~~~P~s--n~~l~~g-~~p~~~~~~~Gv--~v~lGtD~~ 314 (442)
T PRK07203 281 VHNPES--NMGNAVG-YNPVLEMIKNGI--LLGLGTDGY 314 (442)
T ss_pred EECchh--hhhcccC-CCCHHHHHHCCC--eEEEcCCCC
Confidence 222111 0000001 113455555442 477999963
No 139
>PRK12393 amidohydrolase; Provisional
Probab=27.66 E-value=7e+02 Score=28.60 Aligned_cols=108 Identities=12% Similarity=-0.006 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCC----CcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDL----DLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~----~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
.+..+..+.+.+.++|+|+++|........ ...-..|. + .+.+-.+-+-++++.|+.+.-..+...++..--+
T Consensus 216 ~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~--~-~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~ 292 (457)
T PRK12393 216 PPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPV--Q-FVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTG 292 (457)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHH--H-HHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCe
Confidence 445677788999999999999997541100 00011221 1 1121123345688999976655566666654322
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (776)
|-.-+.. +.....| ...++++++. | -++.+|||+.
T Consensus 293 v~~~P~s--n~~lg~g-~~~~~~~~~~-G-v~v~lGtD~~ 327 (457)
T PRK12393 293 IAHCPQS--NGRLGSG-IAPALAMEAA-G-VPVSLGVDGA 327 (457)
T ss_pred EEECchh--hhhhccc-CCCHHHHHHC-C-CeEEEecCCc
Confidence 2221110 0000001 1235566664 3 3788999963
No 140
>PRK07572 cytosine deaminase; Validated
Probab=26.60 E-value=3.7e+02 Score=30.47 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCC
Q 004052 214 YIFISSLEVAQFLDLPLQIHTGFG 237 (776)
Q Consensus 214 ~~l~~l~e~a~e~glPvq~H~G~g 237 (776)
..+..++++++++|+++.+|...+
T Consensus 191 e~l~~~~~~A~~~g~~v~~H~~e~ 214 (426)
T PRK07572 191 ESVRLLCEIAAERGLRVDMHCDES 214 (426)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCC
Confidence 467788999999999999999754
No 141
>PRK14085 imidazolonepropionase; Provisional
Probab=26.32 E-value=8.4e+02 Score=27.04 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCC-CCCCCCcCCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeee
Q 004052 211 LIDYIFISSLEVAQFLDLPLQIHTGF-GDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (776)
Q Consensus 211 l~d~~l~~l~e~a~e~glPvq~H~G~-gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVy 289 (776)
+.+..+..+.+.+.++|+++.+|..- ++ ...+..+++ +.- ..+.|+.+.-..++..++..- +.
T Consensus 204 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~---------~~~v~~~~~---~g~--~~i~H~~~l~~~~~~~la~~g--v~ 267 (382)
T PRK14085 204 FDEDQSRRVLTAGRAAGLGLRVHGNQLGP---------GPGVRLAVE---LGA--ASVDHCTYLTDADVDALAGSG--TV 267 (382)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeCcccC---------ChHHHHHHH---cCC--CcHHHhCCCCHHHHHHHHHcC--CE
Confidence 34556778889999999999999852 11 011333333 111 125577554434444444322 22
Q ss_pred ecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCCccccchhhHHHHHHHHHHhhhhhccCCCChhhHHHHHHHH
Q 004052 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (776)
Q Consensus 290 ld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (776)
.......+.....+ ...++++++.+ =++.+|||+. |...+ .......+. ..+....++.. +..+.+
T Consensus 268 ~~~~P~~~~~~~~~-~~~~~~l~~aG--v~v~lgsD~~--~~~~~--~~~~~~~~~----~~~~~~~l~~~---~al~~a 333 (382)
T PRK14085 268 ATLLPGAEFSTRQP-YPDARRLLDAG--VTVALASDCN--PGSSY--TSSMPFCVA----LAVRQMGMTPA---EAVWAA 333 (382)
T ss_pred EEECcHHHHhcCCC-CchHHHHHHCC--CcEEEEeCCC--CCCCh--HHHHHHHHH----HHHHhcCCCHH---HHHHHH
Confidence 21111100000111 12466666654 4788999953 21111 111111111 12223356653 455555
Q ss_pred HHHhHHHHhCCC
Q 004052 370 FALNAAQFYKIN 381 (776)
Q Consensus 370 l~~NA~rly~l~ 381 (776)
. .|++++++++
T Consensus 334 T-~~~A~~lg~~ 344 (382)
T PRK14085 334 T-AGGARALRRD 344 (382)
T ss_pred H-HHHHHHcCCC
Confidence 5 5777788875
No 142
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=25.13 E-value=1e+03 Score=26.83 Aligned_cols=125 Identities=24% Similarity=0.208 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCC----CCcCCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCC---Cc-CCcChhhhHHHHHhcCC
Q 004052 189 DAEEGLAEDLRSGK----PVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDL---DL-RLSNPLHLRAILEDKRF 260 (776)
Q Consensus 189 ea~~~~~r~l~~~~----~~~~~~~~l~d~~l~~l~e~a~e~glPvq~H~G~gd~~~---~~-~~~~P~~L~~l~~~~~~ 260 (776)
++++.++++...+. ...-.........+..+.+++.++|+|+++|..-..... .. .-..|. +.+.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~--~~~~~~g~l 246 (421)
T COG0402 169 ETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPV--ERLDLLGLL 246 (421)
T ss_pred HHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHH--HHHHHcCCC
Confidence 35666666665431 111111222334556667778899999999998653211 01 112222 222222223
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHh------CC--eeeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCCCCC
Q 004052 261 SKCRFVLLHASYPFSKEASYLAYV------YP--QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS 329 (776)
Q Consensus 261 P~l~ivl~H~g~p~~~e~~~la~~------~p--NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (776)
- -+.+++|+-+....+...++.. +| |.++..+ .+| +.+.++.+ =++..|||+...
T Consensus 247 ~-~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~sG-~~p----------~~~~~~~g--v~v~~gTD~~~~ 309 (421)
T COG0402 247 G-SHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSG-IAP----------VRRLLERG--VNVALGTDGAAS 309 (421)
T ss_pred C-CCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccCC-CCC----------HHHHHHcC--CCEEEecCCccc
Confidence 2 5689999965555555555522 22 6666665 332 23444444 678899997543
No 143
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.08 E-value=1.7e+02 Score=22.85 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCeeeeccCCC--CCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCee
Q 004052 567 VFQEVLADLHSLNISVEQLHAEAG--KGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLA 628 (776)
Q Consensus 567 ~~~~i~~~l~~~Gi~ve~~h~E~~--pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~a 628 (776)
.+.++.+.+.+.|++|.+++.... .|.-.+.+.-.+ ..-+++..+++|+.+
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----------~~~~~~~L~~~G~~v 64 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----------IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----------HHHHHHHHHHCCceE
Confidence 567788999999999976654222 344444444433 234566667777753
No 144
>PRK11191 RNase E inhibitor protein; Provisional
Probab=25.00 E-value=5.5e+02 Score=24.54 Aligned_cols=94 Identities=22% Similarity=0.125 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcCceeEEeeeeEEEEEeecccCCCCCccccCCCCcccCCccccchHHHHHHHHHHHhCCCCeee--
Q 004052 507 REALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQ-- 584 (776)
Q Consensus 507 R~~L~~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~-- 584 (776)
|..=+++++.|. +.|-.+..-.++|+++.-. -.+-++.++..+.++|..|..
T Consensus 11 ~~~~~eVi~~L~-edGsd~~~~~~IEH~~~f~-------------------------d~~~lek~a~~a~klGyeV~~~e 64 (138)
T PRK11191 11 REETREIIEELL-EDGSDPDALYTIEHHFSAD-------------------------DFDKLEKAAVEAFKLGYEVTDAE 64 (138)
T ss_pred HHHHHHHHHHHH-HcCCCcCCCEEEEEEEecC-------------------------CHHHHHHHHHHHHHcCCeeeccc
Confidence 344567888887 4699999999999887533 134567778888999999932
Q ss_pred -eccCCCCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCe
Q 004052 585 -LHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (776)
Q Consensus 585 -~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~ 627 (776)
+-.|.+..-|-+.+.....+...+---..+. +-++|+++|..
T Consensus 65 e~e~edg~~~~~~~~~~e~~l~~e~I~~~~~~-L~~LA~k~~g~ 107 (138)
T PRK11191 65 ELELEDGDVIFCCDAVSEVALNAELIDAQVEQ-LLALAEKFDVE 107 (138)
T ss_pred ccccCCCCeEEEEEEEecCCCCHHHHHHHHHH-HHHHHHHhCCC
Confidence 2245555567666666666555444444444 45688888764
No 145
>PRK07627 dihydroorotase; Provisional
Probab=24.52 E-value=6.5e+02 Score=28.66 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCC---CCC--------Cc-CCcChh-----hhHHHHHhcCCCCcEEEEeCCCCch
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd---~~~--------~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~ 274 (776)
++..+..+++.+++.|.++.+|.--.. .+. .. ..+.|. .+..++.--+.-+.++.+.|.+-+.
T Consensus 159 ~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~ 238 (425)
T PRK07627 159 DTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAA 238 (425)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHH
Confidence 344566777888899999999985310 000 00 112242 2222222113557999999998766
Q ss_pred HHHHHHHHHhC-Ceeeecccc
Q 004052 275 SKEASYLAYVY-PQVYLDFGL 294 (776)
Q Consensus 275 ~~e~~~la~~~-pNVyld~s~ 294 (776)
..++..-++.. -+|+.+++.
T Consensus 239 ~~~~i~~ak~~g~~vt~Ev~p 259 (425)
T PRK07627 239 GVALVRAAKAEGLPVTCDVGV 259 (425)
T ss_pred HHHHHHHHHHCCCCeEEEecc
Confidence 55555444332 256665543
No 146
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.28 E-value=7.2e+02 Score=28.09 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCc----CCcChhhhHHHHHhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 004052 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (776)
Q Consensus 212 ~d~~l~~l~e~a~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (776)
.+..+..+.+.|.+ |+++++|.+-+...... .-..| ++.+.+. .+-+-++++.|+.+--..+...|+..--+
T Consensus 205 s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~--i~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~ 280 (418)
T cd01313 205 PAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRP--VELLLDH-GHLDARWCLVHATHLTDNETLLLGRSGAV 280 (418)
T ss_pred CHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCH--HHHHHHc-CCCCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence 34456777888999 99999999643211100 01123 2223332 23356789999975544566666544333
Q ss_pred eeecccccCCCccHHHHHHHHHHHHHHCCCCcEEEecCC
Q 004052 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (776)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (776)
|-.-+..-. ....|+ ..++++++.+ =++-+|||+
T Consensus 281 v~~~P~sn~--~lg~g~-~p~~~l~~~G--v~v~lGtD~ 314 (418)
T cd01313 281 VGLCPTTEA--NLGDGI-FPAAALLAAG--GRIGIGSDS 314 (418)
T ss_pred EEECCCchh--hccCCC-CCHHHHHHCC--CcEEEecCC
Confidence 332222110 000011 1244555543 378899995
No 147
>PRK05985 cytosine deaminase; Provisional
Probab=23.89 E-value=1e+03 Score=26.40 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCC
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGFG 237 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~g 237 (776)
+..+..+++.|.++|+|+.+|+...
T Consensus 190 ~~~l~~~~~~A~~~g~~i~~Hv~e~ 214 (391)
T PRK05985 190 EGQLDIVFGLAERHGVGIDIHLHEP 214 (391)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeCCC
Confidence 4577888999999999999998653
No 148
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=23.35 E-value=1.9e+02 Score=29.25 Aligned_cols=65 Identities=8% Similarity=0.070 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhCCCCeeeeccCCCCC------c----eEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecccc
Q 004052 565 SPVFQEVLADLHSLNISVEQLHAEAGKG------Q----FEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKF 634 (776)
Q Consensus 565 ~~~~~~i~~~l~~~Gi~ve~~h~E~~pG------Q----~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpKP 634 (776)
--++.++.+.|.+.||+|+.+.++..+. . +|+.++.. -++--+|..+.++|.+.++.+++-|.-
T Consensus 106 PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~------~~~~~L~~~l~~l~~eL~vd~~l~~~~ 179 (190)
T PRK11589 106 PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS------QDAANIEQAFKALCTELNAQGSINVVN 179 (190)
T ss_pred CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC------CCHHHHHHHHHHHHHHhCceEEEEEee
Confidence 3588999999999999999999986653 3 44444443 235567888999999999999998874
Q ss_pred c
Q 004052 635 A 635 (776)
Q Consensus 635 ~ 635 (776)
.
T Consensus 180 ~ 180 (190)
T PRK11589 180 Y 180 (190)
T ss_pred c
Confidence 4
No 149
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=23.20 E-value=1.2e+02 Score=33.84 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=33.5
Q ss_pred cCCCCCceEEecccchHHH-hhhHHHHHHHHHHHHHHHcCCeeEe
Q 004052 587 AEAGKGQFEIALGHTVAAK-AADNLIFTREVLRAVARKHGLLATF 630 (776)
Q Consensus 587 ~E~~pGQ~Ei~l~~~~~l~-aaD~~~~~r~~ik~vA~~~G~~aTF 630 (776)
-|.| ||||+...|.+.+. ++-..-.--.+||++|...|+...+
T Consensus 93 lEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG 136 (456)
T COG3572 93 LEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG 136 (456)
T ss_pred eccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe
Confidence 3667 99999999987655 5555555667899999999988654
No 150
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=22.86 E-value=1.2e+02 Score=31.83 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCCceEEecccchHHHhhhHHHHHHHHHHHHHHHcCCeeEecccccCCCCCccceeeecccc
Q 004052 590 GKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQ 651 (776)
Q Consensus 590 ~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~G~~aTFmpKP~~~~~GsG~HvH~Sl~~ 651 (776)
-|.+.-|.|.|.+++.- +..+-+=..+|++..+.|+.+ | ||- ..|.|+||.+-|..
T Consensus 113 ~PD~lvfDLDP~~~~~f-~~v~~~A~~~r~~L~~lgL~~-f-~KT---SG~kGlHV~vPl~~ 168 (245)
T TIGR02778 113 KPDRIVFDLDPGPGVAW-KLVVEAAQLIRELLDELGLES-F-VKT---SGGKGLHVYVPLRP 168 (245)
T ss_pred CCCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHcCCcc-c-eEc---cCCCeEEEEEECCC
Confidence 58899999999887543 344445556899999999873 3 774 36799999999953
No 151
>PRK09356 imidazolonepropionase; Validated
Probab=22.34 E-value=9.8e+02 Score=26.59 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCC
Q 004052 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (776)
Q Consensus 213 d~~l~~l~e~a~e~glPvq~H~G~ 236 (776)
...+..+++.+.++|+++.+|...
T Consensus 221 ~~~l~~~~~~A~~~g~~v~~H~~~ 244 (406)
T PRK09356 221 VEQSERVLEAAKALGLPVKIHAEQ 244 (406)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEec
Confidence 446678889999999999999963
No 152
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.26 E-value=2.4e+02 Score=23.12 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCCeeeeccC--CCCCceEEecccchHHHhh-hHHHHHHHHHHHHHHHcCCe
Q 004052 566 PVFQEVLADLHSLNISVEQLHAE--AGKGQFEIALGHTVAAKAA-DNLIFTREVLRAVARKHGLL 627 (776)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E--~~pGQ~Ei~l~~~~~l~aa-D~~~~~r~~ik~vA~~~G~~ 627 (776)
-++.++.+.|.+.|+.|..++.- ...+.|.+.+.-.-+ +. -+.-.++..+..++.+.|+.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 47889999999999999999776 456677665554422 22 13667788888999887753
Done!