BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004054
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 198/791 (25%), Positives = 318/791 (40%), Gaps = 171/791 (21%)
Query: 54 QRARDLVSRLTLDEKISQLVN-------------------SAPAIPRLGIPAYEWWSEAL 94
++ +++S+LTL+EK+ +V +PR+G+PA+
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF------- 54
Query: 95 HGVAGVGKGIFFNGTIRG------ATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNA 148
+A G+ N T T+FP I+ A++++ L +G+A+G E R Y
Sbjct: 55 -VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 149 GQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKL 208
AP +NI R+P GR E EDP+++G+ A S+V+GVQ
Sbjct: 113 D-----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG---------- 157
Query: 209 QASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNR 268
AC KHF A N + T R D V+ + L + Y FE VK+ + +M AYN+
Sbjct: 158 -VGACIKHFVA----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNK 212
Query: 269 VNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMD 328
+NG + LL K R +WGF G++ SD YA D V+ LKAG D
Sbjct: 213 LNGKYCSQNEWLLKKVLREEWGFEGFVMSDW-----------YAG---DNPVEQLKAGND 258
Query: 329 -VNCGSFLQKHTK---------AAVKQKKLPESEIDRALHNLFSVRMRLGLF-NGNPTMQ 377
+ G Q +T+ A+K+ KL E +D + N+ V + F N + +
Sbjct: 259 LIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNK 318
Query: 378 PFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGXXXXXXXXXXXXXXIGPNANSAKTL 437
P + A V + + L ++ + L +NS G +
Sbjct: 319 PDLEKHAKVAYEAGAEGVVLLRNEEALPLSENSKIALFGTGQIETIKGGTGSGDTHPRYA 378
Query: 438 LGNYAGPSCRSITPLQAL----QNYV----ENTVYYPGCDTVAC-----------SSASI 478
+ G R + + L ++Y+ E Y P D+ S I
Sbjct: 379 ISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEI 438
Query: 479 DKAVDIAKGADHVVLMM------GLDQTQEKEEL----DRVDLVLPGRQQELITRVAEAA 528
K +AK D V+++ G D+ K + D DL+ + ++R
Sbjct: 439 HK---LAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLI------KTVSREFHEQ 489
Query: 529 KKPVILVLLCGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTW 588
K VI++L G PV++ + + IL G+ +A+V+ G NP G+LP T
Sbjct: 490 GKKVIVLLNIGSPVEVV--SWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT- 546
Query: 589 YPQDYIKVPMTDMKMRPQATSGNPGRT---------YRFYEGKEVFP---FGCGLSYSKY 636
+P+DY VP P+ NP + YR+Y+ V P FG GLSY+ +
Sbjct: 547 FPRDYSDVPSWTFPGEPK---DNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTF 603
Query: 637 SYKFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMA 696
Y VS + L V Y+ ++N G A
Sbjct: 604 EYSDLNVSFDGETLR-------------VQYR--------------------IENTGGRA 630
Query: 697 GKHPVLLFVKPARRGNGRPIKQLVGFQSV-ILNAKEKAEIVFELSPCESLSRAREDGLMV 755
GK +++K + +P ++L F +LN E E+V E+ + S E+ V
Sbjct: 631 GKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEE--WV 688
Query: 756 IEEGTHFLVVG 766
+E G + + VG
Sbjct: 689 VEAGEYEVRVG 699
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 179/396 (45%), Gaps = 62/396 (15%)
Query: 53 SQRARDLVSRLTLDEKIS----------QLVNSAPAIPRLGIPAYEWWSEALHGVAGVGK 102
+ RA +LV+++TLDEKIS Q V P +PRLGIP ++ +G+ VG+
Sbjct: 51 TSRAAELVAQMTLDEKISFVHWALDPDRQNVGYLPGVPRLGIPELRA-ADGPNGIRLVGQ 109
Query: 103 GIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNIN 162
AT+ P + A++FD + G+ +G + RAL N +G P +N
Sbjct: 110 T---------ATALPAPVALASTFDDTMADSYGKVMGRDGRAL-NQDMVLG-----PMMN 154
Query: 163 IFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDL 222
R P GR ET EDPLV+ + AV+ ++G+QG KHF A +
Sbjct: 155 NIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQGAGL-----------MTTAKHFAANNQ 203
Query: 223 DNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLS 282
+N R+ +A V Q L + P FE+ K G AS MCAYN +NG PSC + LL+
Sbjct: 204 EN----NRFSVNANVDEQTLREIEFPAFEASSKAGAAS-FMCAYNGLNGKPSCGNDELLN 258
Query: 283 KTARRQWGFHGYITSD------CDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSFLQ 336
R QWGF G++ SD DA++ D E + P D + G F
Sbjct: 259 NVLRTQWGFQGWVMSDWLATPGTDAITKGLDQEMGVELPGD-----VPKGEPSPPAKFFG 313
Query: 337 KHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQP-FGKIGADVVCSPAHQVL 395
+ K AV +PE+ + R+ + + GL P +P K GA Q +
Sbjct: 314 EALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRPERDKAGA--------QAV 365
Query: 396 ALQAAQDGIVLLKNSHGXXXXXXXXXXXXXXIGPNA 431
+ + A++G VLL+N IGP A
Sbjct: 366 SRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTA 401
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 45/245 (18%)
Query: 504 EELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGYPG 563
E +DR +L LPG Q +LI+ VA+A I+VL G V + + R ++L YPG
Sbjct: 579 EGVDRPNLSLPGTQDKLISAVADANPN-TIVVLNTGSSVLMPWLSKTR---AVLDMWYPG 634
Query: 564 EAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRPQATSGNPGRT-----YRF 618
+AGA A A +++GD NP G+L ++ + D P + R YR+
Sbjct: 635 QAGAEATAALLYGDVNPSGKLTQSFPAAENQHAVAGDPTSYPGVDNQQTYREGIHVGYRW 694
Query: 619 YEGKEV---FPFGCGLSYSKYSYKFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPELGT 675
++ + V FPFG GLSY+ ++ QS+ T VV
Sbjct: 695 FDKENVKPLFPFGHGLSYTSFT--------------QSAPT-------VVR--------- 724
Query: 676 EFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNG-RPIKQLVGFQSVILNAKEKAE 734
T VT+ V+N G+ AG+ V ++ + + K+LVG+ V L A E
Sbjct: 725 --TSTGGLKVTVTVRNSGKRAGQEVVQAYLGASPNVTAPQAKKKLVGYTKVSLAAGEAKT 782
Query: 735 IVFEL 739
+ +
Sbjct: 783 VTVNV 787
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 197/791 (24%), Positives = 317/791 (40%), Gaps = 171/791 (21%)
Query: 54 QRARDLVSRLTLDEKISQLVN-------------------SAPAIPRLGIPAYEWWSEAL 94
++ +++S+LTL+EK+ +V +PR+G+PA+
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF------- 54
Query: 95 HGVAGVGKGIFFNGTIRG------ATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNA 148
+A G+ N T T+FP I+ A++++ L +G+A+G E R Y
Sbjct: 55 -VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 149 GQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKL 208
AP +NI R+P GR E EDP+++G+ A S+V+GVQ
Sbjct: 113 D-----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG---------- 157
Query: 209 QASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNR 268
AC KHF A N + T R D V+ + L + Y FE VK+ + +M AYN+
Sbjct: 158 -VGACIKHFVA----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNK 212
Query: 269 VNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMD 328
+NG + LL K R +WGF G++ S YA D V+ LKAG D
Sbjct: 213 LNGKYCSQNEWLLKKVLREEWGFEGFVMSAW-----------YAG---DNPVEQLKAGND 258
Query: 329 -VNCGSFLQKHTK---------AAVKQKKLPESEIDRALHNLFSVRMRLGLF-NGNPTMQ 377
+ G Q +T+ A+K+ KL E +D + N+ V + F N + +
Sbjct: 259 LIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNK 318
Query: 378 PFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGXXXXXXXXXXXXXXIGPNANSAKTL 437
P + A V + + L ++ + L +NS G +
Sbjct: 319 PDLEKHAKVAYEAGAEGVVLLRNEEALPLSENSKIALFGTGQIETIKGGTGSGDTHPRYA 378
Query: 438 LGNYAGPSCRSITPLQAL----QNYV----ENTVYYPGCDTVAC-----------SSASI 478
+ G R + + L ++Y+ E Y P D+ S I
Sbjct: 379 ISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEI 438
Query: 479 DKAVDIAKGADHVVLMM------GLDQTQEKEEL----DRVDLVLPGRQQELITRVAEAA 528
K +AK D V+++ G D+ K + D DL+ + ++R
Sbjct: 439 HK---LAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLI------KTVSREFHEQ 489
Query: 529 KKPVILVLLCGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTW 588
K VI++L G PV++ + + IL G+ +A+V+ G NP G+LP T
Sbjct: 490 GKKVIVLLNIGSPVEVV--SWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT- 546
Query: 589 YPQDYIKVPMTDMKMRPQATSGNPGRT---------YRFYEGKEVFP---FGCGLSYSKY 636
+P+DY VP P+ NP + YR+Y+ V P FG GLSY+ +
Sbjct: 547 FPRDYSDVPSWTFPGEPK---DNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTF 603
Query: 637 SYKFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMA 696
Y VS + L V Y+ ++N G A
Sbjct: 604 EYSDLNVSFDGETLR-------------VQYR--------------------IENTGGRA 630
Query: 697 GKHPVLLFVKPARRGNGRPIKQLVGFQSV-ILNAKEKAEIVFELSPCESLSRAREDGLMV 755
GK +++K + +P ++L F +LN E E+V E+ + S E+ V
Sbjct: 631 GKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEE--WV 688
Query: 756 IEEGTHFLVVG 766
+E G + + VG
Sbjct: 689 VEAGEYEVRVG 699
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 155/618 (25%), Positives = 264/618 (42%), Gaps = 106/618 (17%)
Query: 45 FCKTTLPISQRARDLVSRLTLDEKISQ---------------------LVNSAPAIPRLG 83
+ T P+ R DL+ R+TL EKI Q L++ ++PR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 84 IPAYEWWSEALHG--------------VAGVGKGIFFNGTIRGATSFPQVILTAASFDSY 129
A EW + + G + G+ + + GAT FP + A+ D Y
Sbjct: 65 ATAKEW-QDMVDGFQKACMSTRLGIPMIYGI-DAVHGQNNVYGATIFPHNVGLGATRDPY 122
Query: 130 LWYRIGQAIGLEARALYNAGQAIGMTF-WAPNINIFRDPRWGRGQETPGEDPLVTGKYAV 188
L RIG+A LE RA G+ + +AP I + RDPRWGR E+ ED + +
Sbjct: 123 LVKRIGEATALEVRA-------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QSMT 174
Query: 189 SYVRGVQGDT---FNGGK--LKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLA 243
+ G+QGD F G + GK + +AC KHF D + + + + L
Sbjct: 175 ELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVG---DGGTVDGINENNTIINREGLM 231
Query: 244 DTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVS 303
+ + P +++ + +G S +M +Y+ NG+ A+++L++ + F G++ SD + +
Sbjct: 232 NIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGID 290
Query: 304 IIYDAEG--YAKSPEDAVVDVLKAGMDV--------NCGSFLQKHTKAAVKQKKLPESEI 353
I G Y+ S + +++ AG+D+ S L H V +P S I
Sbjct: 291 RITTPAGSDYSYSVKASIL----AGLDMIMVPNKYQQFISILTGHVNGGV----IPMSRI 342
Query: 354 DRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKN---- 409
D A+ + V+ +GLF NP P A+ + H+ LA +AA+ +VLLKN
Sbjct: 343 DDAVTRILRVKFTMGLFE-NPYADP---AMAEQLGKQEHRDLAREAARKSLVLLKNGKTS 398
Query: 410 SHGXXXXXXXXXXXXXXIGPNANSAKTLLGNYA-------GPSCRSITPLQALQNYVENT 462
+ G +A++ G + G + T L+A++ V+ +
Sbjct: 399 TDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPS 458
Query: 463 VYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELIT 522
TV + + D + G + ++ +G + + + D ++L +P + L T
Sbjct: 459 -------TVVVFAENPDAEFVKSGGFSYAIVAVG-EHPYTETKGDNLNLTIP--EPGLST 508
Query: 523 RVAEAAKKPVILVLLCGGPVDIT--FAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNP 580
A VL+ G PV + A D +++ A PG G + + +FGD
Sbjct: 509 VQAVCGGVRCATVLISGRPVVVQPLLAASD----ALVAAWLPGSEGQ-GVTDALFGDFGF 563
Query: 581 GGRLPMTWYPQDYIKVPM 598
GRLP TW+ + ++PM
Sbjct: 564 TGRLPRTWF-KSVDQLPM 580
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 155/618 (25%), Positives = 263/618 (42%), Gaps = 106/618 (17%)
Query: 45 FCKTTLPISQRARDLVSRLTLDEKISQ---------------------LVNSAPAIPRLG 83
+ T P+ R DL+ R+TL EKI Q L++ ++PR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 84 IPAYEWWSEALHG--------------VAGVGKGIFFNGTIRGATSFPQVILTAASFDSY 129
A EW + + G + G+ + + GAT FP + A+ D Y
Sbjct: 65 ATAKEW-QDMVDGFQKACMSTRLGIPMIYGI-DAVHGQNNVYGATIFPHNVGLGATRDPY 122
Query: 130 LWYRIGQAIGLEARALYNAGQAIGMTF-WAPNINIFRDPRWGRGQETPGEDPLVTGKYAV 188
L RIG+A LE RA G+ + +AP I + RDPRWGR E+ ED + +
Sbjct: 123 LVKRIGEATALEVRA-------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QSMT 174
Query: 189 SYVRGVQGDT---FNGGK--LKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLA 243
+ G+QGD F G + GK + +AC KHF D + + + + L
Sbjct: 175 ELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVG---DGGTVDGINENNTIINREGLM 231
Query: 244 DTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVS 303
+ + P +++ + +G S +M +Y+ NG+ A+++L++ + F G++ SD + +
Sbjct: 232 NIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGID 290
Query: 304 IIYDAEG--YAKSPEDAVVDVLKAGMDV--------NCGSFLQKHTKAAVKQKKLPESEI 353
I G Y+ S + +++ AG+D+ S L H V +P S I
Sbjct: 291 RITTPAGSDYSYSVKASIL----AGLDMIMVPNKYQQFISILTGHVNGGV----IPMSRI 342
Query: 354 DRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGX 413
D A+ + V+ +GLF NP P A+ + H+ LA +AA+ +VLLKN
Sbjct: 343 DDAVTRILRVKFTMGLFE-NPYADP---AMAEQLGKQEHRDLAREAARKSLVLLKNGKTS 398
Query: 414 XXXXX----XXXXXXXXIGPNANSAKTLLGNYA-------GPSCRSITPLQALQNYVENT 462
G +A++ G + G + T L+A++ V+ +
Sbjct: 399 TDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPS 458
Query: 463 VYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELIT 522
TV + + D + G + ++ +G + + + D ++L +P + L T
Sbjct: 459 -------TVVVFAENPDAEFVKSGGFSYAIVAVG-EHPYTETKGDNLNLTIP--EPGLST 508
Query: 523 RVAEAAKKPVILVLLCGGPVDIT--FAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNP 580
A VL+ G PV + A D +++ A PG G + + +FGD
Sbjct: 509 VQAVCGGVRCATVLISGRPVVVQPLLAASD----ALVAAWLPGSEGQ-GVTDALFGDFGF 563
Query: 581 GGRLPMTWYPQDYIKVPM 598
GRLP TW+ + ++PM
Sbjct: 564 TGRLPRTWF-KSVDQLPM 580
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 160/343 (46%), Gaps = 51/343 (14%)
Query: 82 LGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLE 141
+ IP W ++A+HG + + GAT FP I A+ D+ L RIGQA E
Sbjct: 101 IAIPTV-WGTDAMHG----------HSNVYGATLFPHNIGLGAARDTDLIKRIGQATAKE 149
Query: 142 ARALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNG 201
A I +F AP + + RD RWGR E+ EDP + +YA V G+QGD
Sbjct: 150 V-----AATGIEWSF-APTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDV-GA 202
Query: 202 GKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQD---LADTYQPPFESCVKQGR 258
LKG + A KHF G T D T+ D L D + + S + QG
Sbjct: 203 DFLKGSNRI-ATAKHFVG------DGGTERGVDRGNTLIDEKGLRDIHSAGYFSAINQGV 255
Query: 259 ASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIY--DAEGYAKSPE 316
S +M ++N NG D++LL+ + Q GF G++ SD +A + D E A++
Sbjct: 256 QS-VMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCDLEQCAQA-- 312
Query: 317 DAVVDVLKAGMDVNCGSFLQKHTKA----AVKQKK---LPESEIDRALHNLFSVRMRLGL 369
+ AG+DV + +H +A VKQ K + ES I+ A+ ++R G+
Sbjct: 313 ------INAGVDV---IMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGV 363
Query: 370 FN-GNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSH 411
F P+ +P + + + H+ LA +A + +VLLKN+
Sbjct: 364 FTKSKPSARPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNNE 405
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 160/343 (46%), Gaps = 51/343 (14%)
Query: 82 LGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLE 141
+ IP W ++A+HG + + GAT FP I A+ D+ L RIGQA E
Sbjct: 101 IAIPTV-WGTDAMHG----------HSNVYGATLFPHNIGLGAARDTDLIKRIGQATAKE 149
Query: 142 ARALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNG 201
A I +F AP + + RD RWGR E+ EDP + +YA V G+QGD
Sbjct: 150 V-----AATGIEWSF-APTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDV-GA 202
Query: 202 GKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQD---LADTYQPPFESCVKQGR 258
LKG + A KHF G T D T+ D L D + + S + QG
Sbjct: 203 DFLKGSNRI-ATAKHFVG------DGGTERGVDRGNTLIDEKGLRDIHSAGYFSAINQGV 255
Query: 259 ASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIY--DAEGYAKSPE 316
S +M ++N NG D++LL+ + Q GF G++ SD +A + D E A++
Sbjct: 256 QS-VMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCDLEQCAQA-- 312
Query: 317 DAVVDVLKAGMDVNCGSFLQKHTKA----AVKQKK---LPESEIDRALHNLFSVRMRLGL 369
+ AG+DV + +H +A VKQ K + ES I+ A+ ++R G+
Sbjct: 313 ------INAGVDV---IMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGV 363
Query: 370 FN-GNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSH 411
F P+ +P + + + H+ LA +A + +VLLKN+
Sbjct: 364 FTKSKPSARPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNNE 405
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 158/666 (23%), Positives = 263/666 (39%), Gaps = 103/666 (15%)
Query: 112 GATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGR 171
G+T+F + A+++D L GQ IG E +A I + + + P+ GR
Sbjct: 71 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKA-----SGIHVILGPVAGPLGKTPQGGR 125
Query: 172 GQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRY 231
E G DP +TG G T NG + G +QA+A KH+ + + + T
Sbjct: 126 NWEGFGVDPYLTGI--------AMGQTINGIQSVG-VQATA--KHYILNEQELNRETISS 174
Query: 232 KFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGF 291
D R T+ +L Y PF V+ AS +MC+YN+VN +C D+ L + Q GF
Sbjct: 175 NPDDR-TLHEL---YTWPFADAVQANVAS-VMCSYNKVNTTWACEDQYTLQTVLKDQLGF 229
Query: 292 HGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSFLQKHT-KAAVKQKKLPE 350
GY+ +D ++A+ ++ +D+ G D N + L AV ++P
Sbjct: 230 PGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPT 282
Query: 351 SEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNS 410
S +D + + + G + P I +V + V A+ A+DGIVLLKN
Sbjct: 283 SRVDDMVTRILAAWYLTGQ---DQAGYPSFNISRNVQGNHKTNVRAI--ARDGIVLLKND 337
Query: 411 HGXXXXXXXXXXXXXXIGPNANSAKTLLGNYA--GPSCRS-------------------- 448
+G A ++GN+A PSC
Sbjct: 338 --ANILPLKKPASIAVVGSAA-----IIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYP 390
Query: 449 --ITPLQALQNYVENTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQ-----TQ 501
+ P A+ + G ++ + A+G D ++ + D T
Sbjct: 391 YFVAPYDAINTRASSQ----GTQVTLSNTDNTSSGASAARGKDVAIVFITADSGEGYITV 446
Query: 502 EKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGY 561
E DR +L P + + A VI+V+ G + + + +++WAG
Sbjct: 447 EGNAGDRNNLD-PWHNGNALVQAVAGANSNVIVVVHSVGAIILEQILALPQVKAVVWAGL 505
Query: 562 PGEAGAVALAEVIFGDHNPGGRLPMTW--YPQDYIKVPMTDMKMRPQATSGNPGR--TYR 617
P + AL +V++GD +P G+L T P DY + + S + G Y+
Sbjct: 506 PSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDY-----NTRIVSGGSDSFSEGLFIDYK 560
Query: 618 FYEGKEVFP---FGCGLSYSKYSY-KFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPEL 673
++ + P FG GLSY+K++Y + +S K +T V VP
Sbjct: 561 HFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAK----SGPATGAV----------VPGG 606
Query: 674 GTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKA 733
++ + VT+ + N G++ G L++ P KQL GF + L +
Sbjct: 607 PSDLFQNVA-TVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSG 665
Query: 734 EIVFEL 739
F +
Sbjct: 666 TATFNI 671
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 158/666 (23%), Positives = 263/666 (39%), Gaps = 103/666 (15%)
Query: 112 GATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGR 171
G+T+F + A+++D L GQ IG E +A I + + + P+ GR
Sbjct: 72 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKA-----SGIHVILGPVAGPLGKTPQGGR 126
Query: 172 GQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRY 231
E G DP +TG G T NG + G +QA+A KH+ + + + T
Sbjct: 127 NWEGFGVDPYLTGI--------AMGQTINGIQSVG-VQATA--KHYILNEQELNRETISS 175
Query: 232 KFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGF 291
D R T+ +L Y PF V+ AS +MC+YN+VN +C D+ L + Q GF
Sbjct: 176 NPDDR-TLHEL---YTWPFADAVQANVAS-VMCSYNKVNTTWACEDQYTLQTVLKDQLGF 230
Query: 292 HGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSFLQKHT-KAAVKQKKLPE 350
GY+ +D ++A+ ++ +D+ G D N + L AV ++P
Sbjct: 231 PGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPT 283
Query: 351 SEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNS 410
S +D + + + G + P I +V + V A+ A+DGIVLLKN
Sbjct: 284 SRVDDMVTRILAAWYLTGQ---DQAGYPSFNISRNVQGNHKTNVRAI--ARDGIVLLKND 338
Query: 411 HGXXXXXXXXXXXXXXIGPNANSAKTLLGNYA--GPSCRS-------------------- 448
+G A ++GN+A PSC
Sbjct: 339 --ANILPLKKPASIAVVGSAA-----IIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYP 391
Query: 449 --ITPLQALQNYVENTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQ-----TQ 501
+ P A+ + G ++ + A+G D ++ + D T
Sbjct: 392 YFVAPYDAINTRASSQ----GTQVTLSNTDNTSSGASAARGKDVAIVFITADSGEGYITV 447
Query: 502 EKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGY 561
E DR +L P + + A VI+V+ G + + + +++WAG
Sbjct: 448 EGNAGDRNNLD-PWHNGNALVQAVAGANSNVIVVVHSVGAIILEQILALPQVKAVVWAGL 506
Query: 562 PGEAGAVALAEVIFGDHNPGGRLPMTW--YPQDYIKVPMTDMKMRPQATSGNPGR--TYR 617
P + AL +V++GD +P G+L T P DY + + S + G Y+
Sbjct: 507 PSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDY-----NTRIVSGGSDSFSEGLFIDYK 561
Query: 618 FYEGKEVFP---FGCGLSYSKYSY-KFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPEL 673
++ + P FG GLSY+K++Y + +S K +T V VP
Sbjct: 562 HFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAK----SGPATGAV----------VPGG 607
Query: 674 GTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKA 733
++ + VT+ + N G++ G L++ P KQL GF + L +
Sbjct: 608 PSDLFQNVA-TVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSG 666
Query: 734 EIVFEL 739
F +
Sbjct: 667 TATFNI 672
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 183/449 (40%), Gaps = 68/449 (15%)
Query: 59 LVSRLTLDEKISQLVN----SAPAIPRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGAT 114
L+S L DEKIS L I RLGIPA S+ +G+ G FF+G G
Sbjct: 9 LLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIRGTK---FFDGVPSGC- 63
Query: 115 SFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGRGQE 174
FP A++FD L G+ + E+ A NA +G P N+ R P GRG E
Sbjct: 64 -FPNGTGLASTFDRDLLETAGKLMAKESIA-KNAAVILG-----PTTNMQRGPLGGRGFE 116
Query: 175 TPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFD 234
+ EDP + G S V+G+QG+ +A KHF DL++ R+ +
Sbjct: 117 SFSEDPYLAGMATSSVVKGMQGEGI-----------AATVKHFVCNDLED----QRFSSN 161
Query: 235 ARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGY 294
+ V+ + L + Y PF VK IM AYN+VNG + LL R +W + G
Sbjct: 162 SIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGM 221
Query: 295 ITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSFLQKHTKAAV-----KQKKLP 349
+ SD A +K G+D+ + T+A V ++++
Sbjct: 222 LMSDWFGTYTTAAA--------------IKNGLDIEFPGPTRWRTRALVSHSLNSREQIT 267
Query: 350 ESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQV--LALQAAQDGIVLL 407
++D + + + + N + G + + + L + A D IVLL
Sbjct: 268 TEDVDDRVRQVLKM---IKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLL 324
Query: 408 KNSHGXXXXXXXXXXXXXXIGPNANSAKTLLGNYAG-PSCRSITPLQALQNYVENTVYYP 466
KN + IGPNA + + G A S ++P + + N + V Y
Sbjct: 325 KNKNN--ILPLKKEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDY- 381
Query: 467 GCDTV-ACSSASI-----DKAVDIAKGAD 489
TV A S SI +D AK AD
Sbjct: 382 ---TVGAYSHKSIGGLAESSLIDAAKPAD 407
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 130/312 (41%), Gaps = 76/312 (24%)
Query: 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537
I A ++A D VL++GL+ E E DR ++ LP R EL+ V +A VI V
Sbjct: 564 IRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVI-VNQ 622
Query: 538 CGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVP 597
G PV+ + + + +++ A Y G A+A+V++GD P G+L ++W
Sbjct: 623 SGTPVEFPWLE---DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW--------- 670
Query: 598 MTDMKMRPQATSGNP---------GRT---------YRFYEG---KEVFPFGCGLSYSKY 636
P NP GR YR+YE K FPFG GLSY+ +
Sbjct: 671 -------PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTF 723
Query: 637 SYKFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGE-M 695
D+ +K + K +++ VKN G+
Sbjct: 724 EL------------------------DISDFKVTDD---------KIAISVDVKNTGDKF 750
Query: 696 AGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRARED-GLM 754
AG V ++ RP+K+L GF+ V L EK + +L +++S E+ G
Sbjct: 751 AGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKW 810
Query: 755 VIEEGTHFLVVG 766
+E G + + VG
Sbjct: 811 HVEAGEYLVSVG 822
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 108/244 (44%), Gaps = 31/244 (12%)
Query: 59 LVSRLTLDEKISQLVN----SAPAIPRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGAT 114
L+S L DEKIS L I RLGIPA S+ +G+ G FF+G G
Sbjct: 9 LLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIRGTK---FFDGVPSGC- 63
Query: 115 SFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGRGQE 174
FP A++FD L G+ E+ A NA +G P N R P GRG E
Sbjct: 64 -FPNGTGLASTFDRDLLETAGKLXAKESIA-KNAAVILG-----PTTNXQRGPLGGRGFE 116
Query: 175 TPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFD 234
+ EDP + G S V+G QG+ +A KHF DL++ R+ +
Sbjct: 117 SFSEDPYLAGXATSSVVKGXQGEGI-----------AATVKHFVCNDLED----QRFSSN 161
Query: 235 ARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGY 294
+ V+ + L + Y PF VK I AYN+VNG + LL R +W + G
Sbjct: 162 SIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDILRDEWKWDGX 221
Query: 295 ITSD 298
+ SD
Sbjct: 222 LXSD 225
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 44/296 (14%)
Query: 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537
I A ++A D VL++GL+ E E DR + LP R EL+ V +A VI V
Sbjct: 564 IRNAAELAAKHDKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPNTVI-VNQ 622
Query: 538 CGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTW--YPQDYIK 595
G PV+ + + + +++ A Y G A+A+V++GD P G+L ++W QD
Sbjct: 623 SGTPVEFPWLE---DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPA 679
Query: 596 VPMTDMKMRPQATSGNPGRTYRFYEG---KEVFPFGCGLSYSKYSYKFKAVSQNKLYLNQ 652
+ + YR+YE K FPFG GLSY+ +
Sbjct: 680 FLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFEL-------------- 725
Query: 653 SSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGE-MAGKHPVLLFVKPARRG 711
D+ +K + K +++ VKN G+ AG V ++
Sbjct: 726 ----------DISDFKVTDD---------KIAISVDVKNTGDKFAGSEVVQVYFSALNSK 766
Query: 712 NGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRARED-GLMVIEEGTHFLVVG 766
RP+K+L GF+ V L EK + +L +++S E+ G +E G + + VG
Sbjct: 767 VSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVG 822
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 142/335 (42%), Gaps = 65/335 (19%)
Query: 114 TSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGM-TFWAPNINIFRDPRWGR- 171
T+FP + A+ Y+ G IG E AL G+ T ++P ++I +P
Sbjct: 136 TNFPGNMALGAARSRINAYQTGSIIGKELSAL-------GINTDFSPVVDINNNPDNPVI 188
Query: 172 GQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY---DLDNWKGT 228
G + + +T + + ++G+Q + ++ KHF + D+D+ G
Sbjct: 189 GVRSFSSNRELTSRLGLYTMKGLQ-----------RQDIASALKHFPGHGDTDVDSHYGL 237
Query: 229 TRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAY------------NRVNG----I 272
+ L + PF+ + G A +M A+ ++++G +
Sbjct: 238 PLVSHG----QERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILV 292
Query: 273 PSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDV--- 329
P+ + +++ R++ GF+G I +D + I D G E+AVV +KAG+D+
Sbjct: 293 PATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQ----EEAVVMAVKAGVDIALM 348
Query: 330 --NCGSFLQKHT--------KAAVKQKKLPESEIDRALHNLFSVRMRLGLF---NGNPTM 376
+ S ++ K AVK +PE +I+ ++ + S++++ G++ N + T
Sbjct: 349 PASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTK 408
Query: 377 QPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSH 411
+ +V S H + A+ + +LKN
Sbjct: 409 E-KIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQ 442
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 142/335 (42%), Gaps = 65/335 (19%)
Query: 114 TSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGM-TFWAPNINIFRDPRWGR- 171
T+FP + A+ Y+ G IG E AL G+ T ++P ++I +P
Sbjct: 110 TNFPGNMALGAARSRINAYQTGSIIGKELSAL-------GINTDFSPVVDINNNPDNPVI 162
Query: 172 GQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY---DLDNWKGT 228
G + + +T + + ++G+Q + ++ KHF + D+D+ G
Sbjct: 163 GVRSFSSNRELTSRLGLYTMKGLQ-----------RQDIASALKHFPGHGDTDVDSHYGL 211
Query: 229 TRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAY------------NRVNG----I 272
+ L + PF+ + G A +M A+ ++++G +
Sbjct: 212 PLVSHG----QERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILV 266
Query: 273 PSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDV--- 329
P+ + +++ R++ GF+G I ++ + I D G E+AVV +KAG+D+
Sbjct: 267 PATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHFGQ----EEAVVMAVKAGVDIALM 322
Query: 330 --NCGSFLQKHT--------KAAVKQKKLPESEIDRALHNLFSVRMRLGLF---NGNPTM 376
+ S ++ K AVK +PE +I+ ++ + S++++ G++ N + T
Sbjct: 323 PASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTK 382
Query: 377 QPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSH 411
+ +V S H + A+ + +LKN
Sbjct: 383 E-KIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQ 416
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 142/335 (42%), Gaps = 65/335 (19%)
Query: 114 TSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGM-TFWAPNINIFRDPRWGR- 171
T+FP + A+ Y+ G IG E AL G+ T ++P ++I +P
Sbjct: 140 TNFPGNMALGAARSRINAYQTGSIIGKELSAL-------GINTDFSPVVDINNNPDNPVI 192
Query: 172 GQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY---DLDNWKGT 228
G + + +T + + ++G+Q + ++ KHF + D+D+ G
Sbjct: 193 GVRSFSSNRELTSRLGLYTMKGLQ-----------RQDIASALKHFPGHGDTDVDSHYGL 241
Query: 229 TRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAY------------NRVNG----I 272
+ L + PF+ + G A +M A+ ++++G +
Sbjct: 242 PLVSHG----QERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILV 296
Query: 273 PSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDV--- 329
P+ + +++ R++ GF+G I ++ + I D G E+AVV +KAG+D+
Sbjct: 297 PATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHFGQ----EEAVVMAVKAGVDIALM 352
Query: 330 --NCGSFLQKHT--------KAAVKQKKLPESEIDRALHNLFSVRMRLGLF---NGNPTM 376
+ S ++ K AVK +PE +I+ ++ + S++++ G++ N + T
Sbjct: 353 PASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTK 412
Query: 377 QPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSH 411
+ +V S H + A+ + +LKN
Sbjct: 413 E-KIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQ 446
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 461 NTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQEL 520
N Y G +TV + I+ +D G V+L+ + + E+ L +V+ PG +Q L
Sbjct: 47 NAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL 106
Query: 521 ITRVAEAAKKPVILV-LLCGGPVDITFAKYDR 551
EA K IL + G V T A DR
Sbjct: 107 -----EAVKPMRILSGVDTGEAVVFTGATEDR 133
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 461 NTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQEL 520
N Y G +TV + I+ +D G V+L+ + + E+ L +V+ PG +Q L
Sbjct: 27 NAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL 86
Query: 521 ITRVAEAAKKPVILV-LLCGGPVDITFAKYDR 551
EA K IL + G V T A DR
Sbjct: 87 -----EAVKPMRILSGVDTGEAVVFTGATEDR 113
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 461 NTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQEL 520
N Y G +TV + I+ +D G V+L+ + + E+ L +V+ PG +Q L
Sbjct: 47 NAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL 106
Query: 521 ITRVAEAAKKPVILV-LLCGGPVDITFAKYDR 551
EA K IL + G V T A DR
Sbjct: 107 -----EAVKPMRILSGVDTGEAVVFTGATEDR 133
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 461 NTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQEL 520
N Y G +TV + I+ +D G V+L+ + + E+ L +V+ PG +Q L
Sbjct: 47 NAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL 106
Query: 521 ITRVAEAAKKPVILV-LLCGGPVDITFAKYDR 551
EA K IL + G V T A DR
Sbjct: 107 -----EAVKPMRILSGVDTGEAVVFTGATEDR 133
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 461 NTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQEL 520
N Y G +TV + I+ +D G V+L+ + + E+ L +V+ PG +Q L
Sbjct: 47 NAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL 106
Query: 521 ITRVAEAAKKPVILV-LLCGGPVDITFAKYDR 551
EA K IL + G V T A DR
Sbjct: 107 -----EAVKPMRILSGVDTGEAVVFTGATEDR 133
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 461 NTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQEL 520
N Y G +TV + I+ +D G V+L+ + + E+ L +V+ PG +Q L
Sbjct: 47 NAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL 106
Query: 521 ITRVAEAAKKPVILV-LLCGGPVDITFAKYDR 551
EA K IL + G V T A DR
Sbjct: 107 -----EAVKPMRILSGVDTGEAVVFTGATEDR 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,405,356
Number of Sequences: 62578
Number of extensions: 1004094
Number of successful extensions: 2154
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 45
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)