Query 004054
Match_columns 776
No_of_seqs 355 out of 2260
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 16:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 1E-166 3E-171 1470.7 71.3 760 12-776 11-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 2E-143 5E-148 1277.5 63.6 650 50-773 32-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 5.3E-65 1.1E-69 561.0 27.0 311 80-442 56-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 6.5E-61 1.4E-65 515.9 18.4 265 64-363 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 2.4E-48 5.3E-53 421.0 22.4 243 83-367 54-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 2E-39 4.3E-44 336.3 13.8 216 404-635 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 1.2E-20 2.7E-25 158.8 7.6 70 699-769 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.4 0.0099 2.1E-07 52.8 6.8 62 681-766 19-82 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.5 0.043 9.3E-07 46.9 6.7 67 681-766 5-74 (78)
10 PF12690 BsuPI: Intracellular 95.4 0.15 3.2E-06 44.2 9.5 68 683-764 2-81 (82)
11 COG0486 ThdF Predicted GTPase 91.3 10 0.00023 43.0 17.5 96 253-367 60-171 (454)
12 PF14874 PapD-like: Flagellar- 88.5 2.4 5.2E-05 37.8 8.1 78 681-765 20-97 (102)
13 cd00407 Urease_beta Urease bet 88.3 0.75 1.6E-05 40.9 4.5 53 682-738 19-82 (101)
14 PRK13203 ureB urease subunit b 87.4 0.84 1.8E-05 40.6 4.2 53 682-738 19-82 (102)
15 PRK13202 ureB urease subunit b 86.7 0.99 2.1E-05 40.2 4.3 52 683-738 21-83 (104)
16 TIGR00192 urease_beta urease, 86.5 1 2.2E-05 39.9 4.3 53 682-738 19-82 (101)
17 PRK13201 ureB urease subunit b 83.3 1.8 3.8E-05 40.3 4.4 53 682-738 19-82 (136)
18 PRK13205 ureB urease subunit b 82.2 1.9 4.2E-05 40.9 4.3 53 682-738 19-82 (162)
19 COG0832 UreB Urea amidohydrola 82.1 2.4 5.3E-05 37.4 4.6 53 682-738 19-82 (106)
20 PRK13204 ureB urease subunit b 81.9 2 4.3E-05 41.0 4.3 52 683-738 43-105 (159)
21 PF13473 Cupredoxin_1: Cupredo 81.8 6 0.00013 35.5 7.4 51 684-767 44-94 (104)
22 PRK13198 ureB urease subunit b 80.5 2.4 5.2E-05 40.4 4.3 52 683-738 48-110 (158)
23 PF00699 Urease_beta: Urease b 79.9 4.3 9.4E-05 36.0 5.4 54 681-738 17-81 (100)
24 COG1470 Predicted membrane pro 78.3 6.7 0.00015 44.2 7.6 76 681-770 284-361 (513)
25 PF06030 DUF916: Bacterial pro 77.2 9.4 0.0002 35.6 7.3 60 681-742 27-104 (121)
26 PF00345 PapD_N: Pili and flag 77.0 7 0.00015 36.1 6.5 55 684-741 17-73 (122)
27 PF06280 DUF1034: Fn3-like dom 76.6 12 0.00026 34.1 7.8 62 681-742 8-81 (112)
28 COG1470 Predicted membrane pro 76.6 7.4 0.00016 43.9 7.4 69 681-766 397-466 (513)
29 PRK13192 bifunctional urease s 74.5 3.9 8.4E-05 41.0 4.1 52 683-738 129-191 (208)
30 PF05506 DUF756: Domain of unk 73.5 21 0.00047 31.0 8.3 47 684-741 21-67 (89)
31 PF00927 Transglut_C: Transglu 72.6 9.3 0.0002 34.5 5.9 60 681-742 15-77 (107)
32 PRK13986 urease subunit alpha; 70.9 5.3 0.00011 40.5 4.2 52 683-738 125-187 (225)
33 TIGR02695 azurin azurin. Azuri 70.3 8.9 0.00019 35.8 5.2 52 684-740 26-98 (125)
34 PF07385 DUF1498: Protein of u 69.5 8.2 0.00018 39.5 5.2 65 688-767 111-185 (225)
35 PF07172 GRP: Glycine rich pro 68.6 4.9 0.00011 35.8 3.1 26 1-26 1-26 (95)
36 PF07610 DUF1573: Protein of u 66.6 13 0.00029 28.1 4.6 44 686-738 1-44 (45)
37 PF14796 AP3B1_C: Clathrin-ada 65.3 16 0.00035 35.2 6.0 55 681-741 85-140 (145)
38 PF14016 DUF4232: Protein of u 62.0 28 0.00061 32.6 7.1 60 682-741 19-82 (131)
39 PRK09918 putative fimbrial cha 60.3 30 0.00065 36.0 7.5 52 684-740 41-93 (230)
40 PF04744 Monooxygenase_B: Mono 57.4 19 0.00042 39.6 5.6 55 681-740 263-334 (381)
41 PRK00286 xseA exodeoxyribonucl 55.7 52 0.0011 37.7 9.2 60 476-547 179-240 (438)
42 TIGR01756 LDH_protist lactate 52.1 10 0.00022 41.4 2.6 58 483-545 56-116 (313)
43 PF09624 DUF2393: Protein of u 51.2 34 0.00074 32.9 5.8 61 681-741 62-133 (149)
44 TIGR00237 xseA exodeoxyribonuc 51.1 71 0.0015 36.6 9.3 60 476-547 173-235 (432)
45 PRK11548 outer membrane biogen 49.5 40 0.00086 31.0 5.7 59 1-72 1-59 (113)
46 PF10087 DUF2325: Uncharacteri 49.1 1.2E+02 0.0026 26.8 8.5 40 481-535 42-81 (97)
47 TIGR01759 MalateDH-SF1 malate 49.0 17 0.00037 39.9 3.7 59 483-545 75-135 (323)
48 TIGR03096 nitroso_cyanin nitro 45.4 60 0.0013 30.9 6.2 17 725-741 94-110 (135)
49 PF07233 DUF1425: Protein of u 45.2 1.4E+02 0.003 26.4 8.3 59 681-741 24-82 (94)
50 cd09030 DUF1425 Putative perip 43.5 2.2E+02 0.0048 25.3 9.5 59 681-741 32-90 (101)
51 COG1160 Predicted GTPases [Gen 43.5 59 0.0013 37.0 6.8 46 479-537 75-120 (444)
52 TIGR02722 lp_ uncharacterized 43.3 38 0.00082 34.1 4.9 17 7-23 5-21 (189)
53 TIGR03079 CH4_NH3mon_ox_B meth 42.1 46 0.001 36.6 5.5 55 681-740 282-353 (399)
54 PF06205 GT36_AF: Glycosyltran 41.4 26 0.00057 30.8 3.0 26 714-741 59-84 (90)
55 PLN00135 malate dehydrogenase 40.7 25 0.00054 38.3 3.4 59 483-545 54-114 (309)
56 PF05753 TRAP_beta: Translocon 39.9 1.4E+02 0.003 29.9 8.2 83 681-769 38-127 (181)
57 PLN00112 malate dehydrogenase 39.8 22 0.00047 40.8 2.8 58 483-545 172-232 (444)
58 cd01338 MDH_choloroplast_like 39.5 24 0.00052 38.7 3.0 57 482-545 73-134 (322)
59 PLN02303 urease 38.5 31 0.00067 42.3 3.9 52 683-738 150-212 (837)
60 cd00938 HisRS_RNA HisRS_RNA bi 37.9 73 0.0016 24.3 4.3 30 339-368 13-42 (45)
61 PRK05442 malate dehydrogenase; 37.1 28 0.00061 38.2 3.1 57 483-545 76-136 (326)
62 PF11906 DUF3426: Protein of u 36.7 90 0.0019 29.8 6.2 61 681-741 68-136 (149)
63 PF00056 Ldh_1_N: lactate/mala 36.4 10 0.00022 36.2 -0.4 55 483-544 65-123 (141)
64 COG0039 Mdh Malate/lactate deh 35.7 37 0.0008 37.0 3.6 58 483-545 65-124 (313)
65 COG1361 S-layer domain [Cell e 35.6 1.1E+02 0.0025 35.5 8.0 59 681-741 167-226 (500)
66 PRK15188 fimbrial chaperone pr 35.6 1E+02 0.0022 32.1 6.7 51 684-741 44-98 (228)
67 cd00300 LDH_like L-lactate deh 34.9 32 0.00069 37.3 3.1 58 483-545 62-121 (300)
68 TIGR01757 Malate-DH_plant mala 34.5 30 0.00066 38.9 2.9 57 483-545 116-176 (387)
69 PF02601 Exonuc_VII_L: Exonucl 34.4 1.3E+02 0.0029 32.7 7.9 60 476-547 58-123 (319)
70 PF06165 Glyco_transf_36: Glyc 34.2 30 0.00066 31.5 2.3 21 624-644 31-51 (110)
71 TIGR01772 MDH_euk_gproteo mala 33.8 48 0.001 36.2 4.2 56 483-544 63-121 (312)
72 cd00704 MDH Malate dehydrogena 33.7 34 0.00074 37.5 3.1 59 482-544 71-131 (323)
73 PF08139 LPAM_1: Prokaryotic m 33.6 40 0.00087 22.4 2.1 19 2-21 6-24 (25)
74 TIGR00450 mnmE_trmE_thdF tRNA 33.6 5.9E+02 0.013 29.3 13.2 95 254-367 51-161 (442)
75 cd01337 MDH_glyoxysomal_mitoch 32.5 41 0.00089 36.7 3.4 57 483-544 64-122 (310)
76 PRK15299 fimbrial chaperone pr 32.3 1.1E+02 0.0024 31.8 6.4 56 683-740 38-94 (227)
77 PRK10081 entericidin B membran 32.3 44 0.00096 25.8 2.5 16 1-16 1-16 (48)
78 PLN02602 lactate dehydrogenase 32.2 38 0.00081 37.7 3.1 58 483-545 101-160 (350)
79 TIGR01771 L-LDH-NAD L-lactate 31.7 36 0.00078 36.9 2.8 58 483-545 60-119 (299)
80 PF11471 Sugarporin_N: Maltopo 31.4 68 0.0015 26.1 3.6 22 50-71 28-49 (60)
81 TIGR01758 MDH_euk_cyt malate d 31.2 44 0.00096 36.7 3.4 57 483-545 71-131 (324)
82 PRK13533 7-cyano-7-deazaguanin 30.9 49 0.0011 38.4 3.9 48 284-332 74-121 (487)
83 TIGR01451 B_ant_repeat conserv 30.0 59 0.0013 25.5 3.0 19 681-699 12-30 (53)
84 PRK06559 nicotinate-nucleotide 29.5 2.1E+02 0.0045 31.0 8.0 29 183-220 118-146 (290)
85 PHA00691 hypothetical protein 29.2 60 0.0013 25.8 2.8 21 750-770 11-33 (68)
86 PF11611 DUF4352: Domain of un 29.2 83 0.0018 28.5 4.5 61 681-741 36-101 (123)
87 PF00553 CBM_2: Cellulose bind 28.9 74 0.0016 28.4 3.9 59 681-741 13-84 (101)
88 PF01345 DUF11: Domain of unkn 28.6 56 0.0012 27.3 2.9 19 681-699 41-59 (76)
89 PF00703 Glyco_hydro_2: Glycos 28.2 2.3E+02 0.0049 24.6 7.1 64 681-750 18-81 (110)
90 PRK13556 azoreductase; Provisi 28.1 1.4E+02 0.003 30.3 6.3 39 478-527 80-118 (208)
91 PRK05086 malate dehydrogenase; 27.9 54 0.0012 35.8 3.4 56 483-544 65-123 (312)
92 cd06557 KPHMT-like Ketopantoat 27.9 6.4E+02 0.014 26.7 11.3 19 285-303 27-45 (254)
93 cd01336 MDH_cytoplasmic_cytoso 27.6 55 0.0012 35.9 3.4 59 483-545 74-134 (325)
94 PRK15224 pili assembly chapero 27.5 2.2E+02 0.0048 29.8 7.7 49 684-740 45-97 (237)
95 PRK15218 fimbrial chaperone pr 27.2 2E+02 0.0043 29.9 7.2 54 684-740 35-92 (226)
96 PF09851 SHOCT: Short C-termin 27.1 1.2E+02 0.0027 21.0 3.9 25 337-361 6-30 (31)
97 COG2003 RadC DNA repair protei 27.1 49 0.0011 34.1 2.6 53 249-302 157-210 (224)
98 cd06533 Glyco_transf_WecG_TagA 26.7 2.4E+02 0.0052 27.7 7.5 40 486-544 98-137 (171)
99 PRK15249 fimbrial chaperone pr 26.4 1.3E+02 0.0029 31.7 5.9 54 684-740 45-103 (253)
100 cd05294 LDH-like_MDH_nadp A la 26.3 73 0.0016 34.7 4.0 58 483-545 68-127 (309)
101 PF05690 ThiG: Thiazole biosyn 26.1 1.1E+02 0.0024 31.9 5.0 82 250-347 137-228 (247)
102 PRK15211 fimbrial chaperone pr 26.0 1.7E+02 0.0036 30.5 6.4 49 684-740 39-92 (229)
103 TIGR01763 MalateDH_bact malate 26.0 60 0.0013 35.3 3.3 54 485-545 67-124 (305)
104 PRK15195 fimbrial chaperone pr 25.9 1.8E+02 0.004 30.2 6.7 53 684-740 42-95 (229)
105 cd01857 HSR1_MMR1 HSR1/MMR1. 25.9 1.4E+02 0.0031 27.9 5.6 18 479-496 3-20 (141)
106 PRK00066 ldh L-lactate dehydro 25.9 61 0.0013 35.4 3.3 55 483-544 69-127 (315)
107 TIGR02588 conserved hypothetic 25.8 4.4E+02 0.0096 24.6 8.3 54 681-741 49-105 (122)
108 PRK13555 azoreductase; Provisi 25.6 1.5E+02 0.0032 30.4 5.9 38 478-526 80-117 (208)
109 PRK13792 lysozyme inhibitor; P 25.6 47 0.001 31.2 2.0 24 2-25 1-24 (127)
110 TIGR03352 VI_chp_3 type VI sec 25.3 1.2E+02 0.0026 29.3 4.8 50 717-766 80-140 (146)
111 PRK09926 putative chaperone pr 25.2 1.6E+02 0.0034 31.1 6.1 54 684-740 42-99 (246)
112 cd05291 HicDH_like L-2-hydroxy 25.1 57 0.0012 35.4 3.0 55 484-545 65-123 (306)
113 PRK09810 entericidin A; Provis 24.9 69 0.0015 24.0 2.3 21 1-22 1-21 (41)
114 cd03708 GTPBP_III Domain III o 24.8 1.5E+02 0.0032 25.3 5.0 39 725-766 44-82 (87)
115 cd05290 LDH_3 A subgroup of L- 24.6 76 0.0017 34.6 3.8 56 483-545 64-125 (307)
116 cd05293 LDH_1 A subgroup of L- 24.4 54 0.0012 35.8 2.6 56 484-544 68-125 (312)
117 COG1182 AcpD Acyl carrier prot 23.9 2.2E+02 0.0047 29.0 6.5 38 479-527 79-116 (202)
118 COG2022 ThiG Uncharacterized e 23.8 2E+02 0.0044 30.0 6.2 81 251-347 145-235 (262)
119 PF02102 Peptidase_M35: Deuter 23.3 27 0.00059 38.7 0.0 65 682-746 39-121 (359)
120 PF11614 FixG_C: IG-like fold 23.2 2.1E+02 0.0046 26.0 6.0 50 684-741 34-84 (118)
121 PF02450 LCAT: Lecithin:choles 22.7 1.1E+02 0.0023 34.6 4.6 61 518-578 107-175 (389)
122 PF00009 GTP_EFTU: Elongation 22.4 3E+02 0.0066 27.0 7.4 47 478-537 84-130 (188)
123 COG3354 FlaG Putative archaeal 22.3 6.5E+02 0.014 24.3 8.8 55 681-741 68-130 (154)
124 PF03808 Glyco_tran_WecB: Glyc 22.3 4.1E+02 0.009 26.0 8.2 48 478-544 90-139 (172)
125 PRK07428 nicotinate-nucleotide 22.2 4.6E+02 0.01 28.3 9.1 29 183-220 117-145 (288)
126 PF03896 TRAP_alpha: Transloco 21.6 3.6E+02 0.0078 29.1 8.0 59 681-742 99-161 (285)
127 TIGR02231 conserved hypothetic 21.6 2.7E+02 0.0058 32.7 7.8 58 682-741 443-516 (525)
128 PRK15295 fimbrial assembly cha 21.4 2.4E+02 0.0052 29.2 6.6 51 684-740 36-90 (226)
129 PF00635 Motile_Sperm: MSP (Ma 21.4 2.2E+02 0.0048 25.1 5.6 52 681-741 18-69 (109)
130 COG4454 Uncharacterized copper 21.3 1.2E+02 0.0027 29.4 4.0 17 725-741 116-132 (158)
131 PRK06096 molybdenum transport 21.0 7.1E+02 0.015 26.9 10.1 31 183-220 106-136 (284)
132 PF13598 DUF4139: Domain of un 20.8 2.3E+02 0.0049 30.7 6.6 58 682-741 243-313 (317)
133 PRK10781 rcsF outer membrane l 20.7 1.9E+02 0.0041 27.5 5.0 21 8-28 4-24 (133)
134 PRK00170 azoreductase; Reviewe 20.4 1.9E+02 0.0041 28.8 5.5 38 477-525 76-113 (201)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=1.4e-166 Score=1470.68 Aligned_cols=760 Identities=54% Similarity=0.972 Sum_probs=656.5
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCHHHHHhcccccCCCCCCCCCCchhhhh
Q 004054 12 LLCLCFTSLLTRVDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLVSRLTLDEKISQLVNSAPAIPRLGIPAYEWWS 91 (776)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~ll~~MTleEKv~ql~~~~~~~~rlgip~~~~~~ 91 (776)
++.|++.++........++++|++ ++...+||||+++++++|+++||++||||||++||.+.+++++|||||.+.||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~ 88 (779)
T PLN03080 11 LLFLLALGATFKAADAHPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWS 88 (779)
T ss_pred HHHHHhcchhcccccCCCCcCCCC--ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceec
Confidence 334444444444445567888865 556679999999999999999999999999999999989999999999998999
Q ss_pred hcccceeccCCccccc-CccCCccccchhhhhhhcCCHHHHHHHHHHHHHHHHHhhhccccccceeeccccccCCCCCCC
Q 004054 92 EALHGVAGVGKGIFFN-GTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWG 170 (776)
Q Consensus 92 d~~~g~~~~~~g~~~~-~~~~~~t~fP~~~~lgAt~d~~l~~~~g~~~g~E~ra~~~~g~~~Gi~~~aP~vdi~r~p~~g 170 (776)
|++||++..++|+++. |.+.++|.||++|++|||||++|++++|+++|+|+|++++.++. |+++|+|++||.||||||
T Consensus 89 d~~hGv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~-G~~~~aP~vdi~rdPrwG 167 (779)
T PLN03080 89 ESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQA-GLTFWAPNINIFRDPRWG 167 (779)
T ss_pred ccccccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhcccccc-CcceeecccccccCCCcC
Confidence 9999998888888774 34567899999999999999999999999999999999776655 888899999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCCC---CCCCCCceeeEeeccccccCCCCCCCCcceeeccccCHHHHHhccC
Q 004054 171 RGQETPGEDPLVTGKYAVSYVRGVQGDTFNG---GKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQ 247 (776)
Q Consensus 171 r~~esfgeDp~l~~~~a~a~v~GlQ~~g~~~---~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l 247 (776)
|++|||||||+|+++|+.|||+|+|+.+..+ ..+.++.+|+||+||||||+++.+.++.|...++.+++++|+|+||
T Consensus 168 R~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl 247 (779)
T PLN03080 168 RGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQ 247 (779)
T ss_pred ccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhh
Confidence 9999999999999999999999999852100 0001234599999999999988777778888889999999999999
Q ss_pred chHHHHHHcCCccEEEeeccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCC
Q 004054 248 PPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGM 327 (776)
Q Consensus 248 ~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~ 327 (776)
+||+++|++|.+++||||||++||+|||.|++||++ ||+||||+|+|||||++|..+...|++..+.+|++++||+||+
T Consensus 248 ~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~ 326 (779)
T PLN03080 248 PPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGM 326 (779)
T ss_pred HHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCC
Confidence 999999999988799999999999999999999986 9999999999999999999998888887889999999999999
Q ss_pred CccCcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcCCCcccCCHHHHHHHHHHHhhhhhhh
Q 004054 328 DVNCGSFLQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLL 407 (776)
Q Consensus 328 D~~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~i~~~~~~~la~~~A~esiVLL 407 (776)
||+|...+.+.|.+||++|+|++++||+||+|||++|+++|+|+.+|...+|.++....+.+++|+++|+|+|++|||||
T Consensus 327 Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLL 406 (779)
T PLN03080 327 DINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLL 406 (779)
T ss_pred CcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEE
Confidence 99998877789999999999999999999999999999999999544333455555567889999999999999999999
Q ss_pred ccCCCCCCCCCCCCCeEEEEccCCccccccCCccCCCCCccCCHHHHHHhhhcCeeeecCCCCCCCC-cccHHHHHHHhh
Q 004054 408 KNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVYYPGCDTVACS-SASIDKAVDIAK 486 (776)
Q Consensus 408 KN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~~~~~~~~g~~~~~~~-~~~~~~a~~~a~ 486 (776)
||++++|||++.+.+||+||||+|+....++|+|++.+++.+|++++|+++..++.|..||....+. +..+++|+++|+
T Consensus 407 KN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~ 486 (779)
T PLN03080 407 KNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAK 486 (779)
T ss_pred ecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhc
Confidence 9999999999765679999999999988888899998888999999999987778899998755443 356889999999
Q ss_pred cCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCccccccccccCCcceEEeccCCCchh
Q 004054 487 GADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGYPGEAG 566 (776)
Q Consensus 487 ~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~ 566 (776)
+||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+++.++|+||||+|||||++
T Consensus 487 ~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqeg 566 (779)
T PLN03080 487 RADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVG 566 (779)
T ss_pred cCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccc
Confidence 99999999999988999999999999999999999999987567899999999999999987667899999999999999
Q ss_pred HHHHHHHHhCCCCCCccCceeecCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCceeecceeecc
Q 004054 567 AVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLSYSKYSYKFKAVSQN 646 (776)
Q Consensus 567 g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~~ypFG~GLSYTtF~ys~l~~~~~ 646 (776)
|+|+||||||++|||||||+||||+++.++|++++++++++..+|+|++||||+.+|+||||||||||||+||+++++..
T Consensus 567 G~AiAdvLfG~vnPsGkLPvT~~p~~~~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~ 646 (779)
T PLN03080 567 GQALAEIIFGDYNPGGRLPMTWYPESFTAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKK 646 (779)
T ss_pred hhhhHHHHcCCCCCCCcCeeeecccccccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccc
Confidence 99999999999999999999999998889999888888777778999999999999999999999999999999875321
Q ss_pred ccccccccc-ccccccc--ccccccccCCCC-ccccccceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccce
Q 004054 647 KLYLNQSSS-TKMVENQ--DVVHYKSVPELG-TEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGF 722 (776)
Q Consensus 647 ~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF 722 (776)
+++..... ....... ........-.+. .+.|++..++|+|+|||||+|+|+||||||+++|.++..+|+||||||
T Consensus 647 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF 725 (779)
T PLN03080 647 -LSLSRSSVQDSISRKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGF 725 (779)
T ss_pred -ccccccccccccccccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCc
Confidence 11100000 0000000 000000000000 012332369999999999999999999999999988888999999999
Q ss_pred eeEEeCCCCEEEEEEEecCCCCceEEcCCCcEEEeCcEEEEEEecCCCceEEeC
Q 004054 723 QSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFLVVGDEEYPISIFV 776 (776)
Q Consensus 723 ~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG~~s~~~~~~~ 776 (776)
+||.|+|||+++|+|+|++.++|++||++++|++|+|+|+|+||.++|+++|++
T Consensus 726 ~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 726 DRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred EeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 999999999999999999646899999999999999999999999999999985
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=2.4e-143 Score=1277.45 Aligned_cols=650 Identities=32% Similarity=0.530 Sum_probs=560.8
Q ss_pred CChHHHHHHHHhcCCHHHHHhcccccC-----C---------------------------------CCCCCCCCchhhhh
Q 004054 50 LPISQRARDLVSRLTLDEKISQLVNSA-----P---------------------------------AIPRLGIPAYEWWS 91 (776)
Q Consensus 50 ~~~~~r~~~ll~~MTleEKv~ql~~~~-----~---------------------------------~~~rlgip~~~~~~ 91 (776)
.+.++|+++++++||||||||||++.. . ..+|+|||.+ +..
T Consensus 32 ~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~~ 110 (765)
T PRK15098 32 EARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FAY 110 (765)
T ss_pred cCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EEE
Confidence 468999999999999999999998521 0 0257888888 577
Q ss_pred hcccceeccCCcccccCccCCccccchhhhhhhcCCHHHHHHHHHHHHHHHHHhhhcccccccee-eccccccCCCCCCC
Q 004054 92 EALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTF-WAPNINIFRDPRWG 170 (776)
Q Consensus 92 d~~~g~~~~~~g~~~~~~~~~~t~fP~~~~lgAt~d~~l~~~~g~~~g~E~ra~~~~g~~~Gi~~-~aP~vdi~r~p~~g 170 (776)
|++||. .|.||+++++|||||+++++++|+++|+|+|++ |||+ |+|++||.|||+||
T Consensus 111 D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~-------Gin~~laPv~Dv~r~p~~g 168 (765)
T PRK15098 111 DVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADD-------GLNMTWAPMVDISRDPRWG 168 (765)
T ss_pred eCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc-------CCCEEeeCcccccCCCCcc
Confidence 777764 478999999999999999999999999999999 9999 99999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCceeeEeeccccccCCCCCCCCcceeeccccCHHHHHhccCchH
Q 004054 171 RGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPF 250 (776)
Q Consensus 171 r~~esfgeDp~l~~~~a~a~v~GlQ~~g~~~~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l~pF 250 (776)
|++|||||||+++++|+.|||+|||+++. ....+|++|+|||||||..+. +|...++.+++++|+|.||+||
T Consensus 169 r~~rsfgeDP~lv~~~~~a~v~GlQ~~~~-----~~~~gV~a~~KHFpG~g~~~~---~~~~~~~~~~~~~l~e~~l~PF 240 (765)
T PRK15098 169 RASEGFGEDTYLTSIMGKTMVKAMQGKSP-----ADRYSVMTSVKHFALYGAVEG---GRDYNTVDMSPQRMFNDYLPPY 240 (765)
T ss_pred ccccCcCCCHHHHHHHHHHHHHHHcCCCC-----CCCCCEEEECcEEeCCCCccc---CccCccCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999998631 112249999999999995321 3333456789999999999999
Q ss_pred HHHHHcCCccEEEeeccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCCCcc
Q 004054 251 ESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVN 330 (776)
Q Consensus 251 ~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~ 330 (776)
+++|++|. ++||||||.+||+|||+|+++|+++||+||||+|+|||||++|..+.. |++..+.+|++++|++||+||+
T Consensus 241 ~~ai~ag~-~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~ 318 (765)
T PRK15098 241 KAGLDAGS-GGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMS 318 (765)
T ss_pred HHHHHhCC-CEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcc
Confidence 99999885 499999999999999999999999999999999999999999998874 7777788999999999999999
Q ss_pred Ccch-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcC-------CCcccCCHHHHHHHHHHHhh
Q 004054 331 CGSF-LQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKI-------GADVVCSPAHQVLALQAAQD 402 (776)
Q Consensus 331 ~~~~-~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~-------~~~~i~~~~~~~la~~~A~e 402 (776)
|.+. +.+.|.+||++|.|++++||+||+|||++|+++|+|+ +| |.+. ....+.+++|+++++++|++
T Consensus 319 m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 393 (765)
T PRK15098 319 MSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DP----YSHLGPKESDPVDTNAESRLHRKEAREVARE 393 (765)
T ss_pred cCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CC----ccccccccccccccccCCHHHHHHHHHHHHh
Confidence 9754 4467999999999999999999999999999999998 54 3221 11234578999999999999
Q ss_pred hhhhhccCCCCCCCCCCCCCeEEEEccCCccccccCCccC--CCCCccCCHHHHHHhhhc---CeeeecCCCCCCC----
Q 004054 403 GIVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYA--GPSCRSITPLQALQNYVE---NTVYYPGCDTVAC---- 473 (776)
Q Consensus 403 siVLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~--g~~~~~~t~~~~l~~~~~---~~~~~~g~~~~~~---- 473 (776)
|||||||++++|||++. +||+||||+++....+.|+|+ +.+.+.+|+++||++... ++.|..||.....
T Consensus 394 sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~ 471 (765)
T PRK15098 394 SLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGII 471 (765)
T ss_pred cEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccc
Confidence 99999999999999863 699999999998776678775 456678999999998753 4788888752110
Q ss_pred ----------------CcccHHHHHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEe
Q 004054 474 ----------------SSASIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (776)
Q Consensus 474 ----------------~~~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~ 537 (776)
.+..+++|+++|++||+|||++|.+...++|+.||.+|.||+.|.+||+++++. +||+|||++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~ 550 (765)
T PRK15098 472 DFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLM 550 (765)
T ss_pred hhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEe
Confidence 113578899999999999999999888899999999999999999999999988 899999999
Q ss_pred CCCccccccccccCCcceEEeccCCCchhHHHHHHHHhCCCCCCccCceeecCCCCCCCCCCCCCCCC---CCCCCCCCC
Q 004054 538 CGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRP---QATSGNPGR 614 (776)
Q Consensus 538 ~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~---~~~~~~~g~ 614 (776)
+|+||+|+|+. ++++|||++|+||+++|+|+||||||++|||||||+|| |++.+|+|.++..... +.+..+.+.
T Consensus 551 ~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~~~~P~~~~~~~~~~~y~e~~~~~y 627 (765)
T PRK15098 551 NGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSVGQIPVYYNHLNTGRPYNPDKPNKY 627 (765)
T ss_pred CCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCCCcCccccccCCCCCccccCccccc
Confidence 99999999864 48999999999999999999999999999999999997 8878899976432211 111111223
Q ss_pred ccccCCC--CccccCCCCCCCCCceeecceeeccccccccccccccccccccccccccCCCCccccccceEEEEEEEEec
Q 004054 615 TYRFYEG--KEVFPFGCGLSYSKYSYKFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNH 692 (776)
Q Consensus 615 ~Yr~~~~--~~~ypFG~GLSYTtF~ys~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vsv~VtNt 692 (776)
+||||+. +|+||||||||||+|+||+++++... ... ++.++|+|+||||
T Consensus 628 ~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~~~------------~~~-----------------~~~i~v~v~V~Nt 678 (765)
T PRK15098 628 TSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSSPT------------MKR-----------------DGKVTASVTVTNT 678 (765)
T ss_pred ccceeccCCCccccccCCCCCccEEeeccEecccc------------ccC-----------------CCeEEEEEEEEEC
Confidence 5899976 58999999999999999999875420 001 1579999999999
Q ss_pred CCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecCCCCceEEcCCCcEEEeCcEEEEEEecCCCce
Q 004054 693 GEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFLVVGDEEYPI 772 (776)
Q Consensus 693 G~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG~~s~~~ 772 (776)
|+++|+||||||+++|.+++.+|.||||||+||.|+|||+++|+|+|+. ++|++||.+++|++|+|+|+|+||+||+++
T Consensus 679 G~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~d~ 757 (765)
T PRK15098 679 GKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSARV 757 (765)
T ss_pred CCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCCcc
Confidence 9999999999999999999999999999999999999999999999998 799999999999999999999999999865
Q ss_pred E
Q 004054 773 S 773 (776)
Q Consensus 773 ~ 773 (776)
.
T Consensus 758 ~ 758 (765)
T PRK15098 758 K 758 (765)
T ss_pred c
Confidence 3
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-65 Score=561.00 Aligned_cols=311 Identities=34% Similarity=0.564 Sum_probs=267.7
Q ss_pred CCCCCCchhhhhhcccceeccCCcccccCccCCccccchhhhhhhcCCHHHHHHHHHHHHHHHHHhhhcccccccee-ec
Q 004054 80 PRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTF-WA 158 (776)
Q Consensus 80 ~rlgip~~~~~~d~~~g~~~~~~g~~~~~~~~~~t~fP~~~~lgAt~d~~l~~~~g~~~g~E~ra~~~~g~~~Gi~~-~a 158 (776)
+|++||.+ +..|.++|..+. + ..++|.||+++++||+||+++++++|+++|+|+|++ |||+ |+
T Consensus 56 ~r~~ipll-i~~D~egG~v~r-----~---~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~-------Gin~~fA 119 (397)
T COG1472 56 ARLGIPLL-IAIDQEGGRVQR-----L---REGFTVFPAALALAATWDPELARKVGRVIAKELRAL-------GINLDFA 119 (397)
T ss_pred hccCCCeE-EEEecCCCeeee-----c---cCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc-------CCCcccc
Confidence 58899988 578888876531 1 115899999999999999999999999999999999 9999 99
Q ss_pred cccccCCCCCCCccccC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCceeeEeeccccccCCCCCCCCcceeecccc
Q 004054 159 PNINIFRDPRWGRGQET-PGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARV 237 (776)
Q Consensus 159 P~vdi~r~p~~gr~~es-fgeDp~l~~~~a~a~v~GlQ~~g~~~~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~ 237 (776)
||+||.|||+|||..|+ |||||++++.|+.|||+|||+.| |++|+|||||||..+. +++..+..+
T Consensus 120 PvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~g-----------v~at~KHFpGhG~~~~---dsh~~~~~v 185 (397)
T COG1472 120 PVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGAG-----------VAATIKHFPGHGAVEG---DSHYGLLPI 185 (397)
T ss_pred ceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhCC-----------ceeeeccccCCCCCcC---CcccccCCC
Confidence 99999999999987776 99999999999999999999998 9999999999985432 222222568
Q ss_pred CHHHHHhccCchHHHHHHcCC--ccEEEeeccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCH
Q 004054 238 TMQDLADTYQPPFESCVKQGR--ASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSP 315 (776)
Q Consensus 238 ~~~~l~e~~l~pF~~ai~~g~--~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~ 315 (776)
+++.|+|.|++||+.+++.+. ++++|++||++||.|||.|+++|++|||++|||+|+|||||++|.++...| .+.
T Consensus 186 ~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~~ 262 (397)
T COG1472 186 DPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GSA 262 (397)
T ss_pred ChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cCH
Confidence 999999999999999999995 679999999999999999999999999999999999999999999877654 355
Q ss_pred HHHHHHHHHcCCCccCcch-hH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcCCCcccCCHHHH
Q 004054 316 EDAVVDVLKAGMDVNCGSF-LQ-KHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQ 393 (776)
Q Consensus 316 ~ea~~~al~AG~D~~~~~~-~~-~~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~i~~~~~~ 393 (776)
.+++..+++|||||+|.+. .. ..+..+...+ ++++++|++++|||++|+++|+|+ +| |.+ +|+
T Consensus 263 ~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~----~~~---------~~~ 327 (397)
T COG1472 263 ADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NP----YSS---------EHR 327 (397)
T ss_pred HHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CC----Cch---------hhH
Confidence 6777779999999998543 32 3334444445 999999999999999999999999 55 221 899
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCCeEEEEccCCccccccCCccC
Q 004054 394 VLALQAAQDGIVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYA 442 (776)
Q Consensus 394 ~la~~~A~esiVLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~ 442 (776)
+++++++++|+|||||+.++|||+ ...++|+++||+++.. . |+|+
T Consensus 328 ~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 328 ALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 999999999999999998999999 4457999999999987 5 6665
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=6.5e-61 Score=515.94 Aligned_cols=265 Identities=32% Similarity=0.523 Sum_probs=214.3
Q ss_pred CHHHHHhccccc----------------------------CCCCCCCCCCchhhhhhcccceeccCCcccccCccCCccc
Q 004054 64 TLDEKISQLVNS----------------------------APAIPRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATS 115 (776)
Q Consensus 64 TleEKv~ql~~~----------------------------~~~~~rlgip~~~~~~d~~~g~~~~~~g~~~~~~~~~~t~ 115 (776)
|||||||||++. ....+++|||.+ +..|+++|+.... -.++|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~~--------~~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQRL--------GGGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTST--------TTTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEecC--------CCcCcc
Confidence 899999999831 124578999988 5788888875311 112699
Q ss_pred cchhhhhhhcCCHHHHHHHHHHHHHHHHHhhhcccccccee-eccccccCCCCCCCccccCCCCCHHHHHHHHHHHHHHH
Q 004054 116 FPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTF-WAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGV 194 (776)
Q Consensus 116 fP~~~~lgAt~d~~l~~~~g~~~g~E~ra~~~~g~~~Gi~~-~aP~vdi~r~p~~gr~~esfgeDp~l~~~~a~a~v~Gl 194 (776)
||+++++|||||+++++++|..+|+|++++ |||+ |||++||.|+|+|||+.|+|||||+++++|+.|||+|+
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~-------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~ 144 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL-------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGL 144 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT-------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh-------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999 9999 99999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCceeeEeeccccccC-CCCCCCCcceeeccccCHHHHHhccCchHHHHHHcCCccEEEeeccccCCcc
Q 004054 195 QGDTFNGGKLKGKLQASACCKHFTAYD-LDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIP 273 (776)
Q Consensus 195 Q~~g~~~~~~~~~~~v~a~~KHFpg~g-~~~~~~~~~~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~p 273 (776)
|+.| |++|+||||||+ .++|...+ .+.++.++|+|.||+||+.+|+++.+.+||+||+.+|++|
T Consensus 145 q~~g-----------v~~~~KHFpG~~~~d~~~~~~----~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~p 209 (299)
T PF00933_consen 145 QGAG-----------VAATAKHFPGHGAQDSHRDLP----SVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTP 209 (299)
T ss_dssp HCTT-----------SEEEEEEETTGGCSCTTTTTE----EEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEE
T ss_pred cccc-----------ccccccccccccccccccccc----eecCCcccccchhcccchhcccccccceeeeeccccCCcc
Confidence 9998 999999999974 55554443 3457899999999999999994444559999999999999
Q ss_pred cccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCCCccCcch----hHHHHHHHHHcCCCC
Q 004054 274 SCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSF----LQKHTKAAVKQKKLP 349 (776)
Q Consensus 274 a~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~----~~~~l~~av~~g~i~ 349 (776)
||+|+++|+++||++|||+|+|||||++|+++...+ +..+++++||+||+||+|.+. ..+.|.++|++|.++
T Consensus 210 as~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~ 285 (299)
T PF00933_consen 210 ASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRIS 285 (299)
T ss_dssp GGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----THHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSG
T ss_pred chhhhccchhhCcCcccCCCeEecccchHHHHHhcc----ccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999988643 377999999999999998642 248999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004054 350 ESEIDRALHNLFSV 363 (776)
Q Consensus 350 ~~~id~av~Ril~~ 363 (776)
++|||+||+|||++
T Consensus 286 ~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 286 EERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=2.4e-48 Score=420.98 Aligned_cols=243 Identities=20% Similarity=0.204 Sum_probs=202.2
Q ss_pred CCCchhhhhhcccceeccCCcccccCccCCccccchhhhhhhcCC------HHHHHHHHHHHHHHHHHhhhcccccccee
Q 004054 83 GIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFD------SYLWYRIGQAIGLEARALYNAGQAIGMTF 156 (776)
Q Consensus 83 gip~~~~~~d~~~g~~~~~~g~~~~~~~~~~t~fP~~~~lgAt~d------~~l~~~~g~~~g~E~ra~~~~g~~~Gi~~ 156 (776)
++|.+ +..|+++|..+ +...++|.||+++++||||| +++++++|.++|+|+|++ |||+
T Consensus 54 ~~pll-i~iD~EgG~v~--------rl~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~-------Gin~ 117 (337)
T PRK05337 54 RPPLL-IAVDQEGGRVQ--------RFREGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC-------GIDL 117 (337)
T ss_pred CCCCE-EEEecCCCEee--------ecCCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh-------CCCc
Confidence 57877 67787777532 12236899999999999999 999999999999999999 9999
Q ss_pred -eccccccCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCceeeEeeccccccCCCCCCCCcceeecc
Q 004054 157 -WAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDA 235 (776)
Q Consensus 157 -~aP~vdi~r~p~~gr~~esfgeDp~l~~~~a~a~v~GlQ~~g~~~~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~ 235 (776)
|+|++||.++++| |+.|+|||||+++++|+.||++|||+.| |++|+|||||||....+.+.... ..
T Consensus 118 ~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~g-----------v~~~~KHFpG~G~~~~dsh~~~~-~~ 184 (337)
T PRK05337 118 SFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAAG-----------MAATGKHFPGHGAVEADSHVETP-VD 184 (337)
T ss_pred cccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHCC-----------CEEEecccCCCCCCcCCCCCCCC-CC
Confidence 9999999965444 8899999999999999999999999998 99999999999965432222111 12
Q ss_pred ccCHHHHHhccCchHHHHHHcCCccEEEee---ccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCcccc
Q 004054 236 RVTMQDLADTYQPPFESCVKQGRASGIMCA---YNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYA 312 (776)
Q Consensus 236 ~~~~~~l~e~~l~pF~~ai~~g~~~~vM~s---y~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~ 312 (776)
..+.++|++.||+||+.+|++| +.+||+| |+.+|+.|||+|+++|+++||+||||+|+|||||++|.++.. .
T Consensus 185 ~~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~----~ 259 (337)
T PRK05337 185 ERPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV----A 259 (337)
T ss_pred CCCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----c
Confidence 3467899999999999999998 4599999 899999999999999999999999999999999999986532 4
Q ss_pred CCHHHHHHHHHHcCCCccCcch---hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 004054 313 KSPEDAVVDVLKAGMDVNCGSF---LQKHTKAAVKQKKLPESEIDRALHNLFSVRMRL 367 (776)
Q Consensus 313 ~~~~ea~~~al~AG~D~~~~~~---~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~ 367 (776)
.+.++++++|++||+||+|.+. ....+.+++.+ +.+.+|+++++.+.
T Consensus 260 ~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 260 GDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred CCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 5778999999999999987542 33556666644 77888999887663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=2e-39 Score=336.29 Aligned_cols=216 Identities=43% Similarity=0.639 Sum_probs=156.1
Q ss_pred hhhhccCCCCCCCCCCCCCeEEEEccCCccccccCCccCC-CCCccCCHHHHHHhhhcCe--eeecCCCCCCCCcccHHH
Q 004054 404 IVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYAG-PSCRSITPLQALQNYVENT--VYYPGCDTVACSSASIDK 480 (776)
Q Consensus 404 iVLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g-~~~~~~t~~~~l~~~~~~~--~~~~g~~~~~~~~~~~~~ 480 (776)
||||||++++|||++.+. ||+|+|+.+.....++|+++. .+....+++++|+++.... .+..++.. ......+++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGDA-VDDDEGIDE 78 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCCC-CCCCSCHHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeeccc-cccccchHH
Confidence 799999999999998643 999999999987665555543 4455789999999986542 22221111 112366889
Q ss_pred HHHHhhcCCEEEEEEecCCcccccc--------cCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCccccccccccCC
Q 004054 481 AVDIAKGADHVVLMMGLDQTQEKEE--------LDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRN 552 (776)
Q Consensus 481 a~~~a~~aD~vIv~~g~~~~~~~Eg--------~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~~~~~~~~ 552 (776)
+++.++++|+|||++|. .++|+ .||.++.||+.|.+||+++++. ++|+|||+++++||++.++. ++
T Consensus 79 ~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~-~~~~Ivvv~~~~P~~l~~~~--~~ 152 (227)
T PF01915_consen 79 AVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAA-GKKVIVVVNSGNPYDLDPWE--DN 152 (227)
T ss_dssp HHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHH-HSCEEEEEE-SSGGCGHCCH--HC
T ss_pred HHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHh-cCCeEEEEecCCccccHHHH--hh
Confidence 99999999999999992 23344 6999999999999999999998 78999999999999997664 38
Q ss_pred cceEEeccCCCchhHHHHHHHHhCCCCCCccCceeecCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCC
Q 004054 553 IGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLS 632 (776)
Q Consensus 553 v~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~~ypFG~GLS 632 (776)
++|||++|++|+++++|+||||||++|||||||+|| |++..++|..+... ..+++|+|....++||||||||
T Consensus 153 ~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~fG~GLs 224 (227)
T PF01915_consen 153 VDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSMEDIPAYYNYG-------MYGRTYDYDSGPPLYPFGYGLS 224 (227)
T ss_dssp -SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSGGGTTTTTTTS--------THCCHHHHTTSESB-TT--B-
T ss_pred hceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCChhhCCCccccc-------ccCcccccCCCCccCcCCCCCE
Confidence 999999999999999999999999999999999997 77778888643211 1234577777889999999999
Q ss_pred CCC
Q 004054 633 YSK 635 (776)
Q Consensus 633 YTt 635 (776)
||+
T Consensus 225 yt~ 227 (227)
T PF01915_consen 225 YTY 227 (227)
T ss_dssp TT-
T ss_pred eeC
Confidence 996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.82 E-value=1.2e-20 Score=158.78 Aligned_cols=70 Identities=44% Similarity=0.630 Sum_probs=61.0
Q ss_pred ceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecCCCCceEEcCC-CcEEEeCcEEEEEEecCC
Q 004054 699 HPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRARED-GLMVIEEGTHFLVVGDEE 769 (776)
Q Consensus 699 evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~e~G~y~i~vG~~s 769 (776)
||||||++++.++..+|.|+|+||+||.|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999999999999999999999999999999999998 799999998 799999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.36 E-value=0.0099 Score=52.76 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=44.5
Q ss_pred ceEEEEEEEEecCCCC-CCceEEEEeecCCCCCCCCcccccceeeE-EeCCCCEEEEEEEecCCCCceEEcCCCcEEEeC
Q 004054 681 RKFLVTIGVKNHGEMA-GKHPVLLFVKPARRGNGRPIKQLVGFQSV-ILNAKEKAEIVFELSPCESLSRAREDGLMVIEE 758 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~-G~evvQlY~~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~ 758 (776)
+.++++++|+|.|... +.-.|++|+.... .+-..| .|+|||+++++|.+.. . .+
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~----------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~ 74 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLDGNS----------VSTVTIPSLAPGESETVTFTWTP-P-------------SP 74 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEETTEE----------EEEEEESEB-TTEEEEEEEEEE--S-------------S-
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEECCce----------eccEEECCcCCCcEEEEEEEEEe-C-------------CC
Confidence 6799999999999874 5567888876532 155566 6999999999999987 3 56
Q ss_pred cEEEEEEe
Q 004054 759 GTHFLVVG 766 (776)
Q Consensus 759 G~y~i~vG 766 (776)
|.|+|.+=
T Consensus 75 G~~~i~~~ 82 (101)
T PF07705_consen 75 GSYTIRVV 82 (101)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEE
Confidence 88887764
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.51 E-value=0.043 Score=46.86 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=38.3
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCC--CCCcccccceeeE-EeCCCCEEEEEEEecCCCCceEEcCCCcEEEe
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGN--GRPIKQLVGFQSV-ILNAKEKAEIVFELSPCESLSRAREDGLMVIE 757 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~--~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e 757 (776)
+.++++++|+|.|..+-.. +-+=+..|.+=. ..| .++ .|+|||+++++|.|.+.++ .+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~-v~~~l~~P~GW~~~~~~-------~~~~~l~pG~s~~~~~~V~vp~~-----------a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTN-VSLSLSLPEGWTVSASP-------ASVPSLPPGESVTVTFTVTVPAD-----------AA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS--EEEEE--TTSE---EE-------EEE--B-TTSEEEEEEEEEE-TT-------------
T ss_pred CEEEEEEEEEECCCCceee-EEEEEeCCCCccccCCc-------cccccCCCCCEEEEEEEEECCCC-----------CC
Confidence 6789999999999765332 444444454311 112 223 6999999999999998432 35
Q ss_pred CcEEEEEEe
Q 004054 758 EGTHFLVVG 766 (776)
Q Consensus 758 ~G~y~i~vG 766 (776)
+|+|.|.+-
T Consensus 66 ~G~y~v~~~ 74 (78)
T PF10633_consen 66 PGTYTVTVT 74 (78)
T ss_dssp SEEEEEEEE
T ss_pred CceEEEEEE
Confidence 899988764
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=95.36 E-value=0.15 Score=44.15 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=36.2
Q ss_pred EEEEEEEEecCCCC------CCceEEEEeecCCCC------CCCCcccccceeeEEeCCCCEEEEEEEecCCCCceEEcC
Q 004054 683 FLVTIGVKNHGEMA------GKHPVLLFVKPARRG------NGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRARE 750 (776)
Q Consensus 683 ~~vsv~VtNtG~~~------G~evvQlY~~~~~~~------~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 750 (776)
+.+.++|+|+++.+ .---.-+.|.++.+. ..+.- ...++.+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 67888999988742 222344555555442 22222 34556778999999999999997 4444
Q ss_pred CCcEEEeCcEEEEE
Q 004054 751 DGLMVIEEGTHFLV 764 (776)
Q Consensus 751 ~~~~~~e~G~y~i~ 764 (776)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999875
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=91.33 E-value=10 Score=42.99 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=58.5
Q ss_pred HHHcCCccEEEeeccccCC-----cccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcC-
Q 004054 253 CVKQGRASGIMCAYNRVNG-----IPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAG- 326 (776)
Q Consensus 253 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG- 326 (776)
.|+++.+ .+|.+-+++.| ..|+.++.+++.+|+.=+... .-+.. +.|-..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~G-aR~Ae----------------pGEFs~RAFLNgK 121 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLG-ARLAE----------------PGEFSKRAFLNGK 121 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcC-CeecC----------------CCcchHHHHhcCC
Confidence 4566666 88999888887 467889988888887544332 22222 223345555555
Q ss_pred CCccCc--------chhHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 004054 327 MDVNCG--------SFLQKHTKAAVK--QKKLPESEIDRALHNLFSVRMRL 367 (776)
Q Consensus 327 ~D~~~~--------~~~~~~l~~av~--~g~i~~~~id~av~Ril~~k~~~ 367 (776)
+|+.-- .........|++ +|.++ +++++-.++++.+...+
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGALS-QLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHh
Confidence 555321 011123344444 47775 48888888888887665
No 12
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=88.45 E-value=2.4 Score=37.81 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=50.1
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecCCCCceEEcCCCcEEEeCcE
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGT 760 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~ 760 (776)
...+.+++|+|+|..+.+-- ++.+.. ..... -.-+..-.|+||++.++++++.+.+....++..-.-..|.|.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~----v~~~~~-~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~ 92 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFR----VRQPES-LSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGS 92 (102)
T ss_pred CEEEEEEEEEECCCCCEEEE----EEeCCc-CCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeE
Confidence 46789999999999875433 333331 11111 112334469999999999999943567777655444666777
Q ss_pred EEEEE
Q 004054 761 HFLVV 765 (776)
Q Consensus 761 y~i~v 765 (776)
+.|-|
T Consensus 93 ~~i~v 97 (102)
T PF14874_consen 93 FEIPV 97 (102)
T ss_pred EEEEE
Confidence 77655
No 13
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=88.35 E-value=0.75 Score=40.87 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=31.9
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeecCC----CCCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKPAR----RGNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~~~----~~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
.=+++++|+|||+|+ +|+=-+... .........=.|| .-|..+|||+++|++.
T Consensus 19 r~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 19 REAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CCEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 346899999999987 666333211 1111111111222 4577899999999874
No 14
>PRK13203 ureB urease subunit beta; Reviewed
Probab=87.38 E-value=0.84 Score=40.56 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=31.7
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
.=+++++|+|||+|+ ||+=-+...- ....-...=.|+ .-|..+|||+++|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 19 RETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CCEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999997 6663332111 111111111122 4577899999999874
No 15
>PRK13202 ureB urease subunit beta; Reviewed
Probab=86.73 E-value=0.99 Score=40.23 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=31.2
Q ss_pred EEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 683 FLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 683 ~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
-+++++|+|||+|+ +|+=-+...- ........=.|+ .-|..+||++++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 46899999999987 6663332111 111111111121 4577899999999875
No 16
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=86.52 E-value=1 Score=39.94 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=31.6
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
.=+++++|+|||+|+ ||+=-+...- ....-...=.|+ .-|..+||++++|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 19 RKTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CcEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346889999999987 6663322111 111111111222 4578899999999875
No 17
>PRK13201 ureB urease subunit beta; Reviewed
Probab=83.33 E-value=1.8 Score=40.34 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=31.9
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
.-+++++|+|||+|+ |||=-+...- ....-...=.|| .-|..+||++++|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999997 6663332111 111111111222 4578999999999985
No 18
>PRK13205 ureB urease subunit beta; Reviewed
Probab=82.20 E-value=1.9 Score=40.90 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=32.4
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
.=+++++|+|||+|+ |||=-+...- ........=.|| .-|..+||++++|++.
T Consensus 19 R~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 19 REAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred CcEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999997 6763332111 111111111222 4578899999999986
No 19
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=82.13 E-value=2.4 Score=37.42 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=30.6
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeec----CCCCCCCCccccc-------ceeeEEeCCCCEEEEEEE
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKP----ARRGNGRPIKQLV-------GFQSVILNAKEKAEIVFE 738 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~----~~~~~~~P~k~L~-------gF~kv~L~pGes~~V~~~ 738 (776)
.-+++++|+|||+|+ +|+=-+. .+.+...-...-. .=.-|..+||+.++|++.
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 456888899999997 5552221 1111111111111 124578899999999974
No 20
>PRK13204 ureB urease subunit beta; Reviewed
Probab=81.90 E-value=2 Score=40.96 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=31.5
Q ss_pred EEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 683 FLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 683 ~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
-+++++|+|||+|+ |||=-+...- ....-...=.|+ .-|..+||++++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 45889999999987 6663332111 111111111222 4578899999999985
No 21
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=81.83 E-value=6 Score=35.52 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=28.0
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecCCCCceEEcCCCcEEEeCcEEEE
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFL 763 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i 763 (776)
.|+++++|.|+.. .+ +.+.. .+ ....|.||++++++|+-. ++|+|++
T Consensus 44 ~v~l~~~N~~~~~-h~---~~i~~------------~~-~~~~l~~g~~~~~~f~~~----------------~~G~y~~ 90 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HE---FVIPD------------LG-ISKVLPPGETATVTFTPL----------------KPGEYEF 90 (104)
T ss_dssp EEEEEEEE-SSS--EE---EEEGG------------GT-EEEEE-TT-EEEEEEEE-----------------S-EEEEE
T ss_pred eEEEEEEECCCCc-EE---EEECC------------Cc-eEEEECCCCEEEEEEcCC----------------CCEEEEE
Confidence 3667789998885 22 22222 22 336799999999998533 3688887
Q ss_pred EEec
Q 004054 764 VVGD 767 (776)
Q Consensus 764 ~vG~ 767 (776)
+.+-
T Consensus 91 ~C~~ 94 (104)
T PF13473_consen 91 YCTM 94 (104)
T ss_dssp B-SS
T ss_pred EcCC
Confidence 7653
No 22
>PRK13198 ureB urease subunit beta; Reviewed
Probab=80.46 E-value=2.4 Score=40.38 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=31.6
Q ss_pred EEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 683 FLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 683 ~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
=+++++|+|||+|+ |||=-+...- ....-...=.|+ .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 46889999999987 6663322111 111111111222 4578899999999985
No 23
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=79.86 E-value=4.3 Score=36.05 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=28.5
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
+.-+++++|+|||+|+ +|+=-+.... ........=.|+ .-|..+||++++|++.
T Consensus 17 gr~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 3457899999999987 7774332111 111111111222 4578899999999874
No 24
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.28 E-value=6.7 Score=44.23 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=47.5
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEee-cCCC-CCCCCcccccceeeEEeCCCCEEEEEEEecCCCCceEEcCCCcEEEeC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVK-PARR-GNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEE 758 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~-~~~~-~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~ 758 (776)
.+..++|++.|-|.-+-+.. |=+. .|.. ....-.-+ -.-.||.|+|||+++|++++.+.. -.+|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~--Le~~g~pe~w~~~Fteg~-~~vt~vkL~~gE~kdvtleV~ps~-----------na~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYA--LELSGLPEGWTAEFTEGE-LRVTSVKLKPGEEKDVTLEVYPSL-----------NATP 349 (513)
T ss_pred CceEEEEEEccCCCCCceeE--EEeccCCCCcceEEeeCc-eEEEEEEecCCCceEEEEEEecCC-----------CCCC
Confidence 56789999999986543322 2222 2222 11000101 113678899999999999999843 3478
Q ss_pred cEEEEEEecCCC
Q 004054 759 GTHFLVVGDEEY 770 (776)
Q Consensus 759 G~y~i~vG~~s~ 770 (776)
|+|.+.|-.++.
T Consensus 350 G~Ynv~I~A~s~ 361 (513)
T COG1470 350 GTYNVTITASSS 361 (513)
T ss_pred CceeEEEEEecc
Confidence 999998875553
No 25
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=77.16 E-value=9.4 Score=35.60 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=36.8
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCC-----------------CCCCCcccccceee-EEeCCCCEEEEEEEecCC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARR-----------------GNGRPIKQLVGFQS-VILNAKEKAEIVFELSPC 742 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~-----------------~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~~ 742 (776)
...+++++|+|+++-+- .+++++..-.+ +...+..+|....+ |.|+|+|+++|+|+|..-
T Consensus 27 q~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcC
Confidence 45678888888766432 34444433221 11224444544444 689999999999999873
No 26
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=77.01 E-value=7 Score=36.12 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=38.3
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCC-CCCCCcccccceeeE-EeCCCCEEEEEEEecC
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARR-GNGRPIKQLVGFQSV-ILNAKEKAEIVFELSP 741 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~-~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 741 (776)
..+++|+|+|+ -.-.+|+.+..... ....+...|.-+=.+ .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999998 55678999887211 112334455555555 499999999999 443
No 27
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=76.64 E-value=12 Score=34.11 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=32.1
Q ss_pred ceEEEEEEEEecCCCCCCceEEEE-e----ec-CCCC-CCCC-c----ccccceeeEEeCCCCEEEEEEEecCC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLF-V----KP-ARRG-NGRP-I----KQLVGFQSVILNAKEKAEIVFELSPC 742 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY-~----~~-~~~~-~~~P-~----k~L~gF~kv~L~pGes~~V~~~l~~~ 742 (776)
...+.+++++|.|+.+=..-+... + .+ .... ...+ . .....=.++.|+||++++|+++++..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 347899999999986654433333 1 11 0110 0011 1 12223356779999999999999983
No 28
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.59 E-value=7.4 Score=43.89 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=47.0
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeE-EeCCCCEEEEEEEecCCCCceEEcCCCcEEEeCc
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSV-ILNAKEKAEIVFELSPCESLSRAREDGLMVIEEG 759 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G 759 (776)
+..++.+.|.|+|+.+=+. +-|=+..|.+ . ..+.-.| ++ .|+|||+++|.++++.-++ ..+|
T Consensus 397 ee~~i~i~I~NsGna~Ltd-Ikl~v~~Pqg---W-ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~-----------a~aG 459 (513)
T COG1470 397 EEKTIRISIENSGNAPLTD-IKLTVNGPQG---W-EIEVDES-TIPSLEPGESKTVSLTITVPED-----------AGAG 459 (513)
T ss_pred ccceEEEEEEecCCCccce-eeEEecCCcc---c-eEEECcc-cccccCCCCcceEEEEEEcCCC-----------CCCC
Confidence 4577899999999777665 4566666655 1 1245555 56 4999999999999887432 1466
Q ss_pred EEEEEEe
Q 004054 760 THFLVVG 766 (776)
Q Consensus 760 ~y~i~vG 766 (776)
+|+|.+-
T Consensus 460 dY~i~i~ 466 (513)
T COG1470 460 DYRITIT 466 (513)
T ss_pred cEEEEEE
Confidence 6666654
No 29
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=74.49 E-value=3.9 Score=41.02 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=31.3
Q ss_pred EEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 683 FLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 683 ~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
=+++++|+|||+|+ +|+=-+...- ......+.=.|| .-|..+||++++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46889999999997 6663332111 111111111222 4577899999999875
No 30
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=73.51 E-value=21 Score=31.04 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=31.4
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecC
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 741 (776)
.+.++++|.| +..+.+-|.+.......| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g----~~~~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPG----SAAVTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCC----CCcEEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6888899974 444555554421111223 6688999999999999953
No 31
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=72.56 E-value=9.3 Score=34.45 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=35.5
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEe--ec-CCCCCCCCcccccceeeEEeCCCCEEEEEEEecCC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFV--KP-ARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPC 742 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~--~~-~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~ 742 (776)
..++|+++++|..+..-+. |++++ .. .++.+.+ ....+-...+.|+|||++++++.+.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~-~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTR-DQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEE-EEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCccc-ccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 5699999999998887444 23333 22 2222221 122344455679999999999999873
No 32
>PRK13986 urease subunit alpha; Provisional
Probab=70.94 E-value=5.3 Score=40.55 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=31.1
Q ss_pred EEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 683 FLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 683 ~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
=+++++|+|||+|+ +|+=-+...- ....-...=.|| .-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46889999999997 6663322111 111111111122 4578999999999985
No 33
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=70.25 E-value=8.9 Score=35.77 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=31.0
Q ss_pred EEEEEEEecCCCC----CCceEEEEeecCCCC---------------CCCC-cccccceeeEE-eCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMA----GKHPVLLFVKPARRG---------------NGRP-IKQLVGFQSVI-LNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~----G~evvQlY~~~~~~~---------------~~~P-~k~L~gF~kv~-L~pGes~~V~~~l~ 740 (776)
+|+|+.+|+|..+ |.-.|- ..+... -..+ ..+..+ .+. |.|||+.+|+|+.+
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViA--hTkliggGes~svtF~~~ 98 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIA--HTKVIGGGEKTSVTFDVS 98 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEE--EccccCCCceEEEEEECC
Confidence 5888899999876 655552 221110 0111 112222 233 89999999999986
No 34
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=69.49 E-value=8.2 Score=39.50 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEEecCCCCCCceEEEEeecCCCCC--CCC--------cccccceeeEEeCCCCEEEEEEEecCCCCceEEcCCCcEEEe
Q 004054 688 GVKNHGEMAGKHPVLLFVKPARRGN--GRP--------IKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVIE 757 (776)
Q Consensus 688 ~VtNtG~~~G~evvQlY~~~~~~~~--~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e 757 (776)
++-|.|. |.-+++||-+++.... ..| .+.+.+..++.|.||||-+ |.+ ... ..|..|
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT----L~P-g~y------H~Fw~e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT----LPP-GIY------HWFWGE 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE----E-T-TEE------EEEEE-
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe----eCC-CCe------eeEEec
Confidence 4566654 7778888888765432 122 3457888999999999865 666 322 123445
Q ss_pred CcEEEEEEec
Q 004054 758 EGTHFLVVGD 767 (776)
Q Consensus 758 ~G~y~i~vG~ 767 (776)
+|. +.||.
T Consensus 178 ~g~--vLigE 185 (225)
T PF07385_consen 178 GGD--VLIGE 185 (225)
T ss_dssp TTS--EEEEE
T ss_pred CCC--EEEEe
Confidence 555 66663
No 35
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=68.64 E-value=4.9 Score=35.78 Aligned_cols=26 Identities=15% Similarity=-0.035 Sum_probs=14.5
Q ss_pred CchhhHHHHHHHHHHHHHhhccccCC
Q 004054 1 MIFHKLSLVFPLLCLCFTSLLTRVDS 26 (776)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (776)
|-.|+++++.++|+++|+.+|.++++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 44566666655555555555554443
No 36
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=66.58 E-value=13 Score=28.07 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEE
Q 004054 686 TIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFE 738 (776)
Q Consensus 686 sv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~ 738 (776)
+++++|+|+.+ ++++=-.....= -...|.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCgC-----t~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCGC-----TTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccCC-----EEeeCCcceECCCCEEEEEEE
Confidence 36789987643 333322222211 123345556999999998875
No 37
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=65.31 E-value=16 Score=35.17 Aligned_cols=55 Identities=5% Similarity=0.080 Sum_probs=42.6
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEE-eCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVI-LNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~ 741 (776)
..+.|.++.+|+++. ++--+-+..+.- ..-.++++|.+|. |+||++.++.+-|+-
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k~l---~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEKKL---PAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCCCC---CCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 468899999999874 555556665532 2345799999997 999999999999986
No 38
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=61.96 E-value=28 Score=32.65 Aligned_cols=60 Identities=15% Similarity=0.010 Sum_probs=39.6
Q ss_pred eEEEEEEEEecCCC----CCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecC
Q 004054 682 KFLVTIGVKNHGEM----AGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 682 ~~~vsv~VtNtG~~----~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 741 (776)
.-.+.+++||+|+. .|-=-|++.-.+-..-.....++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 44789999999986 5776777772221110111233333556789999999999998875
No 39
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=60.35 E-value=30 Score=36.04 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=33.5
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCccccccee-eEEeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQ-SVILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~-kv~L~pGes~~V~~~l~ 740 (776)
.++++|+|+|+. .-.+|..+.+.......| +.-.= -..|+||+++.|.+...
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~---fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKL---LLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCC---EEEcCCeEEECCCCceEEEEEEC
Confidence 478888999976 478899887643221111 11111 14699999999998643
No 40
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=57.40 E-value=19 Score=39.56 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=29.8
Q ss_pred ceEEEEEEEEecCCCCCCceEEEE------eecCCC-----CCCCCccccccee--eE----EeCCCCEEEEEEEec
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLF------VKPARR-----GNGRPIKQLVGFQ--SV----ILNAKEKAEIVFELS 740 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY------~~~~~~-----~~~~P~k~L~gF~--kv----~L~pGes~~V~~~l~ 740 (776)
++++++++|||+|+-+ |+|= +++.+. ....|. +|.+-+ +| -|+|||++++++++.
T Consensus 263 R~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred cEEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 6899999999997643 3331 111111 112343 454431 12 489999999999984
No 41
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=55.65 E-value=52 Score=37.66 Aligned_cols=60 Identities=28% Similarity=0.347 Sum_probs=37.2
Q ss_pred ccHHHHHHHhhc--CCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCccccccc
Q 004054 476 ASIDKAVDIAKG--ADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFA 547 (776)
Q Consensus 476 ~~~~~a~~~a~~--aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~~~ 547 (776)
..+.+|.+.+.. .|++|++=| |+...+|. +-++.++++++++. ..|||.-+ |-=.|.+..
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RG--------GGS~eDL~-~Fn~e~v~~ai~~~-~~Pvis~I--GHE~D~tl~ 240 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARG--------GGSLEDLW-AFNDEAVARAIAAS-RIPVISAV--GHETDFTIA 240 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecC--------CCCHHHhh-ccCcHHHHHHHHcC-CCCEEEec--cCCCCccHH
Confidence 445556655555 598887654 22333442 45678899999987 78876543 655555543
No 42
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=52.15 E-value=10 Score=41.43 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=33.5
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCCh--HHHHHHHHHHHhcCCC-EEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG--RQQELITRVAEAAKKP-VILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~p-vIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|... .+|.+|.++---- --++++.++.+. .+| .++++. ++|+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll~~N~~I~~~i~~~i~~~-a~~~~ivivv-tNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLLTKNTPIFKATGEALSEY-AKPTVKVLVI-GNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEEEe-CCchHHH
Confidence 46789999999988642 3456665431100 112345555565 445 444444 6899773
No 43
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=51.22 E-value=34 Score=32.86 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=38.1
Q ss_pred ceEEEEEEEEecCCCCCCce-EE--EEeec-CCCC-CCCCcccccceeeE------EeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKHP-VL--LFVKP-ARRG-NGRPIKQLVGFQSV------ILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~ev-vQ--lY~~~-~~~~-~~~P~k~L~gF~kv------~L~pGes~~V~~~l~~ 741 (776)
+++.|..+|||+|+++=+++ ++ ++=.+ .... ...=..++.+|.+. .|+|||+++.++.++.
T Consensus 62 ~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 62 ESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred cEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 68999999999999876653 22 22211 1111 11123445556322 2999999999999873
No 44
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=51.07 E-value=71 Score=36.58 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=36.1
Q ss_pred ccHHHHHHHhhc---CCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCccccccc
Q 004054 476 ASIDKAVDIAKG---ADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFA 547 (776)
Q Consensus 476 ~~~~~a~~~a~~---aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~~~ 547 (776)
..+..|.+.+.. .|++||+=|. +...+|. +-++..+.+++++. ..|||.-+ |-=.|.+-.
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~~-~~Pvis~i--GHe~D~ti~ 235 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFLS-KIPIISAV--GHETDFTIS 235 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHcC-CCCEEEec--CcCCCccHH
Confidence 344455554443 6988876552 2333432 45678899999876 78876543 666665543
No 45
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=49.53 E-value=40 Score=30.96 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=31.3
Q ss_pred CchhhHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCHHHHHhcc
Q 004054 1 MIFHKLSLVFPLLCLCFTSLLTRVDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLVSRLTLDEKISQL 72 (776)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~ll~~MTleEKv~ql 72 (776)
|.++++++++++++++|++|+... ..+. ..+.........+.+++|---||-+|=...|
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~~~---~~~y----------~~~v~qG~~~~~~~l~~l~~GmTk~qV~~lL 59 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCSTLE---RVVY----------RPDINQGNYLTPNDVAKIHVGMTQQQVAYTL 59 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCCCC---cccc----------cccCCccccCCHHHHHHhcCCCCHHHHHHHc
Confidence 445555555556666777776421 1011 0011123344567778888889966555443
No 46
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.10 E-value=1.2e+02 Score=26.77 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEE
Q 004054 481 AVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILV 535 (776)
Q Consensus 481 a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvV 535 (776)
..+..+.+|+||++++.- ...-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 456789999999998642 2234566778887768888765
No 47
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=48.99 E-value=17 Score=39.91 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCCh--HHHHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG--RQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|.. ..+|.+|.++--.- --.++++++.+.+.++.|+++. ++|+|+.
T Consensus 75 ~~~~daDvVVitAG~~---~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 135 (323)
T TIGR01759 75 EAFKDVDAALLVGAFP---RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTN 135 (323)
T ss_pred HHhCCCCEEEEeCCCC---CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 5678999999999864 24566665432111 1134455666653336666655 5899763
No 48
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=45.39 E-value=60 Score=30.89 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.4
Q ss_pred EEeCCCCEEEEEEEecC
Q 004054 725 VILNAKEKAEIVFELSP 741 (776)
Q Consensus 725 v~L~pGes~~V~~~l~~ 741 (776)
-.|+|||+++++|..+.
T Consensus 94 ~~I~pGet~TitF~adK 110 (135)
T TIGR03096 94 EVIKAGETKTISFKADK 110 (135)
T ss_pred eEECCCCeEEEEEECCC
Confidence 34899999999998874
No 49
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=45.19 E-value=1.4e+02 Score=26.38 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=34.0
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 741 (776)
+..+++++++|+.+.+-.=--.+|==+..+-...|. ...++++.|.|+++.+|+..-+.
T Consensus 24 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 24 GLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 578999999999776654444444445555332232 26799999999999999988765
No 50
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=43.52 E-value=2.2e+02 Score=25.28 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=40.9
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 741 (776)
+..++++.|+|+.+.+-.=-=.+|==|..+-...|. ...++.+.|.++++.+|+..-+-
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 468999999999765433333333334544333343 58899999999999999887764
No 51
>COG1160 Predicted GTPases [General function prediction only]
Probab=43.45 E-value=59 Score=37.01 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEe
Q 004054 479 DKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (776)
Q Consensus 479 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~ 537 (776)
+++..++++||++|+++.. .+| +.+...++.+-+... +||+|+|++
T Consensus 75 ~Qa~~Ai~eADvilfvVD~-----~~G-------it~~D~~ia~~Lr~~-~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDG-----REG-------ITPADEEIAKILRRS-KKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeC-----CCC-------CCHHHHHHHHHHHhc-CCCEEEEEE
Confidence 4667788999999999852 222 334455555555543 799999998
No 52
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=43.26 E-value=38 Score=34.12 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhccc
Q 004054 7 SLVFPLLCLCFTSLLTR 23 (776)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (776)
++.+++++++|++|+..
T Consensus 5 ~~~~~~~al~l~gC~~~ 21 (189)
T TIGR02722 5 IIFVALLALLLSGCVSQ 21 (189)
T ss_pred HHHHHHHHHHHccCCCC
Confidence 34445667778888663
No 53
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=42.11 E-value=46 Score=36.59 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=32.3
Q ss_pred ceEEEEEEEEecCCCCCCceEEE---------Eeec---CCCCCCCCccccc--cee---eEEeCCCCEEEEEEEec
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLL---------FVKP---ARRGNGRPIKQLV--GFQ---SVILNAKEKAEIVFELS 740 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQl---------Y~~~---~~~~~~~P~k~L~--gF~---kv~L~pGes~~V~~~l~ 740 (776)
..++++++|||.|+-+ |.| |+.. +......|. +|. |-. ...|+|||+++|+++..
T Consensus 282 R~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 282 RALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred cEEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 6899999999997643 222 1211 111122333 232 222 12399999999999875
No 54
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=41.41 E-value=26 Score=30.76 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=17.2
Q ss_pred CCcccccceeeEEeCCCCEEEEEEEecC
Q 004054 714 RPIKQLVGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 714 ~P~k~L~gF~kv~L~pGes~~V~~~l~~ 741 (776)
-|.--|+ .+|.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 3554444 4688999999999998754
No 55
>PLN00135 malate dehydrogenase
Probab=40.69 E-value=25 Score=38.34 Aligned_cols=59 Identities=17% Similarity=0.347 Sum_probs=34.6
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCCh--HHHHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG--RQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|... .+|.+|.++--.- --.++++++.+..++..++++. ++|+|+.
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv~ 114 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANTN 114 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHHH
Confidence 56789999999998642 3455665432110 1123455565522456666555 5899773
No 56
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.93 E-value=1.4e+02 Score=29.93 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=48.6
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEe-ecCCCCCCCCcccccce--eeE-EeCCCCEEEEEEEecCCCCceEEcCCC---c
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFV-KPARRGNGRPIKQLVGF--QSV-ILNAKEKAEIVFELSPCESLSRAREDG---L 753 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~-~~~~~~~~~P~k~L~gF--~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~---~ 753 (776)
+.++|+++|.|.|+-+..+|. |.= ..|...- .-..|= .+. .|+||++.+.++.|.+ ....+++-.. .
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~-l~D~~fp~~~F----~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVK-LTDDSFPPEDF----ELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPAVVT 111 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEE-EECCCCCcccc----EeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCEEEE
Confidence 579999999999988666643 322 1221110 112221 122 4999999999999998 4566666543 2
Q ss_pred EEEeCcEEEEEEecCC
Q 004054 754 MVIEEGTHFLVVGDEE 769 (776)
Q Consensus 754 ~~~e~G~y~i~vG~~s 769 (776)
+..+.|.=...++.|+
T Consensus 112 Y~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSS 127 (181)
T ss_pred EECCCCCceeEEEEec
Confidence 3344443334444433
No 57
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=39.84 E-value=22 Score=40.78 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=34.0
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChH--HHHHHHHHHH-hcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGR--QQELITRVAE-AAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~-~~~~pvIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|.. ..+|.+|.++--.-. =.+..+++.+ . +++.++++. ++|+|+.
T Consensus 172 e~~kdaDiVVitAG~p---rkpG~tR~dLl~~N~~I~k~i~~~I~~~a-~p~~ivIVV-sNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKP---RGPGMERADLLDINGQIFAEQGKALNEVA-SRNVKVIVV-GNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEc-CCcHHHH
Confidence 5678999999988854 245666654321111 1233445555 3 455665555 6899774
No 58
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.54 E-value=24 Score=38.70 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHhhcCCEEEEEEecCCcccccccCCCCCCCChHH----HHHHHHHHHhcC-CCEEEEEeCCCccccc
Q 004054 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAK-KPVILVLLCGGPVDIT 545 (776)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~-~pvIvVl~~g~P~~l~ 545 (776)
.+..++||+||++.|... .+|.+|.++- ..- .++..++.+. . +..|+++. ++|+|+.
T Consensus 73 ~~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~-~~~~~iiivv-sNPvD~~ 134 (322)
T cd01338 73 NVAFKDADWALLVGAKPR---GPGMERADLL--KANGKIFTAQGKALNDV-ASRDVKVLVV-GNPCNTN 134 (322)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhh-CCCCeEEEEe-cCcHHHH
Confidence 356789999999988642 3455665431 112 2344555555 4 35555554 6899763
No 59
>PLN02303 urease
Probab=38.53 E-value=31 Score=42.26 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=31.9
Q ss_pred EEEEEEEEecCCCCCCceEEEEeecCCC----CCCCCcccccce-------eeEEeCCCCEEEEEEE
Q 004054 683 FLVTIGVKNHGEMAGKHPVLLFVKPARR----GNGRPIKQLVGF-------QSVILNAKEKAEIVFE 738 (776)
Q Consensus 683 ~~vsv~VtNtG~~~G~evvQlY~~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 738 (776)
=+++++|+|||+|+ |||=-+...- ....-...=.|| .-|..+|||+++|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 35889999999997 6763332111 111111111222 4578999999999985
No 60
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=37.89 E-value=73 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=24.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 004054 339 TKAAVKQKKLPESEIDRALHNLFSVRMRLG 368 (776)
Q Consensus 339 l~~av~~g~i~~~~id~av~Ril~~k~~~G 368 (776)
....++.-.-+.+.||..|..+|.+|.++|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 334456667789999999999999999987
No 61
>PRK05442 malate dehydrogenase; Provisional
Probab=37.10 E-value=28 Score=38.23 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=33.5
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChHH----HHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|.. ..+|.+|.++- ..- .++.+++.+..++..++++. ++|+|+.
T Consensus 76 ~~~~daDiVVitaG~~---~k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARP---RGPGMERKDLL--EANGAIFTAQGKALNEVAARDVKVLVV-GNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCC---CCCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHH
Confidence 5678999999988853 23566665432 111 23444555532345555554 5899773
No 62
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=36.74 E-value=90 Score=29.79 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=41.7
Q ss_pred ceEEEEEEEEecCCCCCCc-eEEEEeecCCCC-----CCCCcccccce-e-eEEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKH-PVLLFVKPARRG-----NGRPIKQLVGF-Q-SVILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~e-vvQlY~~~~~~~-----~~~P~k~L~gF-~-kv~L~pGes~~V~~~l~~ 741 (776)
+.+.|+.+++|+++++=.- .+++-+.+..+. +-.|..-|..- . +..|+||++.++++.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 6799999999999876443 566666665553 22453333332 2 345999999999998874
No 63
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=36.35 E-value=10 Score=36.22 Aligned_cols=55 Identities=31% Similarity=0.554 Sum_probs=31.1
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChHHH----HHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQ----ELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
+..++||+||++.|.. ..+|.+|.++- ..-. ++.+++.+.+ ++.++++. .+|+++
T Consensus 65 ~~~~~aDivvitag~~---~~~g~sR~~ll--~~N~~i~~~~~~~i~~~~-p~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVP---RKPGMSRLDLL--EANAKIVKEIAKKIAKYA-PDAIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTS---SSTTSSHHHHH--HHHHHHHHHHHHHHHHHS-TTSEEEE--SSSHHH
T ss_pred cccccccEEEEecccc---ccccccHHHHH--HHhHhHHHHHHHHHHHhC-CccEEEEe-CCcHHH
Confidence 4568999999988754 24555554432 2222 3344555653 44444444 579986
No 64
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=35.70 E-value=37 Score=37.03 Aligned_cols=58 Identities=29% Similarity=0.465 Sum_probs=35.8
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCC--hHHHHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..+.||+||++.|... ..|.+|.+|--- .--.++.+++.+. +++.++++. ++|+++.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEe-cCcHHHH
Confidence 46789999999998643 556666554211 1123445566666 445665555 6899874
No 65
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=35.63 E-value=1.1e+02 Score=35.50 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=39.0
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCccccc-ceeeEEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLV-GFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~-gF~kv~L~pGes~~V~~~l~~ 741 (776)
..-+++++|+|+|...-+.+.-.|.. |.. ..-|..+.. -+-.-.|.|||+..|+|.+..
T Consensus 167 ~~~~l~~~I~N~G~~~~~~v~l~~~~-~~~-~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 167 ETNTLTLTIKNPGEGPAKNVSLSLES-PTS-YLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred CccEEEEEEEeCCcccccceEEEEeC-Ccc-eeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 34589999999999988887766654 110 011222222 122335999999999999987
No 66
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=35.60 E-value=1e+02 Score=32.12 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=33.8
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceee----EEeCCCCEEEEEEEecC
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQS----VILNAKEKAEIVFELSP 741 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~~ 741 (776)
.++++|+|+++ ..-..||..+.+....... .|-= ..|+||+++++.|....
T Consensus 44 ~~sv~i~N~~~-~~p~LvQsWv~~~~~~~~~------pFivtPPlfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSA-SNVFLIQSWVANADGSRST------DFIITPPLFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCC-CccEEEEEEEecCCCCccC------CEEEcCCeEEECCCCceEEEEEECC
Confidence 58899999975 2235699999765432211 1222 25899999999987653
No 67
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=34.86 E-value=32 Score=37.28 Aligned_cols=58 Identities=29% Similarity=0.387 Sum_probs=35.0
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCCh--HHHHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG--RQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..+.||+||++.|... .+|.+|.++..-. --.++.+++.+. +++.++++. ++|.++-
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~-sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVV-SNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc-cChHHHH
Confidence 46789999999998642 3556665432211 123345555555 455665554 6899763
No 68
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=34.54 E-value=30 Score=38.92 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=32.7
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChHHH----HHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQ----ELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..+++|+||++.|... .+|.+|.++- ..-. +....+.+..++..|+++. ++|+|+.
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADLL--DINGQIFADQGKALNAVASKNCKVLVV-GNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHH
Confidence 56789999999888542 3455664431 1112 2344444532345555544 6899774
No 69
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=34.41 E-value=1.3e+02 Score=32.68 Aligned_cols=60 Identities=30% Similarity=0.349 Sum_probs=35.9
Q ss_pred ccHHHHHHHhh------cCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCccccccc
Q 004054 476 ASIDKAVDIAK------GADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFA 547 (776)
Q Consensus 476 ~~~~~a~~~a~------~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~~~ 547 (776)
..+-+|.+.+. ..|++|++=| |+...+|. +-+...+.+++++. ..|||.-+ |-=.|.+-.
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RG--------GGs~eDL~-~FN~e~varai~~~-~~PvisaI--GHe~D~ti~ 123 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRG--------GGSIEDLW-AFNDEEVARAIAAS-PIPVISAI--GHETDFTIA 123 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecC--------CCChHHhc-ccChHHHHHHHHhC-CCCEEEec--CCCCCchHH
Confidence 34445555543 4788887644 22333332 44778899999987 78876543 655555433
No 70
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=34.15 E-value=30 Score=31.51 Aligned_cols=21 Identities=10% Similarity=0.388 Sum_probs=16.7
Q ss_pred cccCCCCCCCCCceeecceee
Q 004054 624 VFPFGCGLSYSKYSYKFKAVS 644 (776)
Q Consensus 624 ~ypFG~GLSYTtF~ys~l~~~ 644 (776)
.|-.-||+.||+|....-.+.
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~ 51 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIE 51 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEE
T ss_pred cEEEEECCCeEEEEEEeCCEE
Confidence 588999999999998764443
No 71
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=33.80 E-value=48 Score=36.24 Aligned_cols=56 Identities=30% Similarity=0.502 Sum_probs=33.4
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChHH---HHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ---QELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q---~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
+..+.||+||++.|... .+|.+|.++ |+.+- .+..+++.+. +++.++++. .+|+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~-~p~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAES-CPKAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHh-CCCeEEEEe-cCchhh
Confidence 56789999999998642 345566543 12111 2334455555 455555544 689984
No 72
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=33.66 E-value=34 Score=37.53 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=34.2
Q ss_pred HHHhhcCCEEEEEEecCCcccccccCCCCCCCChH--HHHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 482 VDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGR--QQELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 482 ~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
.+..+.+|+||++.|... .+|.+|.++-.... -+++..++.+.+++..++++. ++|+|+
T Consensus 71 ~~~~~~aDiVVitAG~~~---~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 71 EEAFKDVDVAILVGAFPR---KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 356789999999988642 34556654321111 123445555552355665555 689976
No 73
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.64 E-value=40 Score=22.37 Aligned_cols=19 Identities=5% Similarity=0.112 Sum_probs=10.1
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 004054 2 IFHKLSLVFPLLCLCFTSLL 21 (776)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (776)
+.|||+..++ +++.|++|+
T Consensus 6 mmKkil~~l~-a~~~LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLL-ALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHH-HHHHHhhcc
Confidence 3566665553 333466665
No 74
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=33.62 E-value=5.9e+02 Score=29.26 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=54.9
Q ss_pred HHcCCccEEEeeccccCC-----cccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcC-C
Q 004054 254 VKQGRASGIMCAYNRVNG-----IPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAG-M 327 (776)
Q Consensus 254 i~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG-~ 327 (776)
|+++.+ ..|.+.+++.| ..|+.++.+++.+|..=+.+ |.-..+ +.|=..+|+..| +
T Consensus 51 iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R~A~----------------pGEFT~RAflNGk~ 112 (442)
T TIGR00450 51 KDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GARLAQ----------------PGEFTQRAFLNGKM 112 (442)
T ss_pred eeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCeEcC----------------CchhhHHHHhcCCc
Confidence 555555 88999898887 57899999999998755433 433333 334456666666 5
Q ss_pred CccCcc--------hhHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 004054 328 DVNCGS--------FLQKHTKAAVK--QKKLPESEIDRALHNLFSVRMRL 367 (776)
Q Consensus 328 D~~~~~--------~~~~~l~~av~--~g~i~~~~id~av~Ril~~k~~~ 367 (776)
|+.--. ........|++ +|.++ +++++--.+++.+...+
T Consensus 113 DL~qaEav~dlI~a~t~~~~~~A~~~l~G~ls-~~~~~~r~~l~~~~a~i 161 (442)
T TIGR00450 113 DLTQAEAINELILAPNNKVKDIALNKLAGELD-QKIEAIRKSLLQLLAQV 161 (442)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHe
Confidence 654210 11123333333 36554 35555555666554443
No 75
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.46 E-value=41 Score=36.72 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=33.5
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCCh--HHHHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG--RQQELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
+..+.+|+||++.|... .+|.+|.++---- --.+.++++.+. ++..++++. .+|+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc-cCchhh
Confidence 56789999999998642 3455554431100 112344555565 455655555 689976
No 76
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=32.33 E-value=1.1e+02 Score=31.76 Aligned_cols=56 Identities=9% Similarity=0.044 Sum_probs=35.0
Q ss_pred EEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeE-EeCCCCEEEEEEEec
Q 004054 683 FLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSV-ILNAKEKAEIVFELS 740 (776)
Q Consensus 683 ~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~ 740 (776)
=.++++|+|+|+. .-.||..+.+.......+...+.-.=-+ .|+||+++.+.|...
T Consensus 38 ~~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 38 KDASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred cEEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 3588889999986 6899999875322110111112222223 599999999997654
No 77
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=32.28 E-value=44 Score=25.78 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=9.3
Q ss_pred CchhhHHHHHHHHHHH
Q 004054 1 MIFHKLSLVFPLLCLC 16 (776)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (776)
||+|+|.++++++++.
T Consensus 1 MmKk~i~~i~~~l~~~ 16 (48)
T PRK10081 1 MVKKTIAAIFSVLVLS 16 (48)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 5677766655444443
No 78
>PLN02602 lactate dehydrogenase
Probab=32.17 E-value=38 Score=37.67 Aligned_cols=58 Identities=22% Similarity=0.413 Sum_probs=34.1
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChH--HHHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGR--QQELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|... .+|.+|.++-.--. =.++++++.+. +.+.++++. .+|+++-
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivv-tNPvdv~ 160 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIV-SNPVDVL 160 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCchHHH
Confidence 34789999999988642 34566654321111 12344555555 455666555 5899763
No 79
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=31.67 E-value=36 Score=36.92 Aligned_cols=58 Identities=29% Similarity=0.349 Sum_probs=34.2
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCCh--HHHHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG--RQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|... .+|.+|.++---. --.+..+++.+. +++.++++. ++|+++-
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~~ 119 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVA-TNPVDIL 119 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEe-CCHHHHH
Confidence 46789999999988642 3456665431100 112345556665 555665554 6898763
No 80
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.44 E-value=68 Score=26.05 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=16.8
Q ss_pred CChHHHHHHHHhcCCHHHHHhc
Q 004054 50 LPISQRARDLVSRLTLDEKISQ 71 (776)
Q Consensus 50 ~~~~~r~~~ll~~MTleEKv~q 71 (776)
+++|+|...|=.|+--.|+-.+
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999998888877666443
No 81
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=31.23 E-value=44 Score=36.68 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=33.1
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChHH----HHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..+++|+||++.|... .++.+|.++- ..- .++.+++.+.+++..|+++. ++|+|+.
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~ll--~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDLL--SKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 56789999999888642 2344453321 122 23344555542355666665 5899773
No 82
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=30.86 E-value=49 Score=38.41 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCCCccCc
Q 004054 284 TARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCG 332 (776)
Q Consensus 284 iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 332 (776)
=|++-+||+|.|+||.++-+.+. ......++++...---.-|.|+.|.
T Consensus 74 Glh~f~~w~g~ilTDSGgfQv~s-~g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 74 GLHKLLGFDGPIMTDSGSYQLLV-YGDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred CHHHHhCCCCCeEeccCCcEEEE-cCCccCCHHHHHHHHHHhCCCEEeE
Confidence 37788999999999999765432 1223457777655445669999874
No 83
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=29.95 E-value=59 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.0
Q ss_pred ceEEEEEEEEecCCCCCCc
Q 004054 681 RKFLVTIGVKNHGEMAGKH 699 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~e 699 (776)
+.++.+++|+|+|..+...
T Consensus 12 d~v~Yti~v~N~g~~~a~~ 30 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATN 30 (53)
T ss_pred CEEEEEEEEEECCCCceEe
Confidence 6899999999999876543
No 84
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.47 E-value=2.1e+02 Score=30.98 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCceeeEeecccccc
Q 004054 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (776)
Q Consensus 183 ~~~~a~a~v~GlQ~~g~~~~~~~~~~~v~a~~KHFpg~ 220 (776)
++.+...||+-+.+.+ -.|.+|=|++||.
T Consensus 118 IAT~T~~~V~~~~~~~---------~~i~~TRKT~PG~ 146 (290)
T PRK06559 118 IASMTAAYVEALGDDR---------IKVFDTRKTTPNL 146 (290)
T ss_pred HHHHHHHHHHHhcCCC---------eEEEeecCCCCcc
Confidence 5677777887774432 2499999999995
No 85
>PHA00691 hypothetical protein
Probab=29.17 E-value=60 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.3
Q ss_pred CCCc-EEEe-CcEEEEEEecCCC
Q 004054 750 EDGL-MVIE-EGTHFLVVGDEEY 770 (776)
Q Consensus 750 ~~~~-~~~e-~G~y~i~vG~~s~ 770 (776)
++|+ |+++ .|.|+++|.+-.|
T Consensus 11 ENGr~WVL~K~~~Y~V~vSG~TH 33 (68)
T PHA00691 11 ENGRVWVLKKSDSYTVFVSGVTH 33 (68)
T ss_pred cCCeEEEEEeCCcEEEEEecccc
Confidence 3454 8888 8999999986555
No 86
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=29.17 E-value=83 Score=28.55 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=28.2
Q ss_pred ceEEEEEEEEecCCCCCCc-eEEEEeecCCCCCCCCcccc----cceeeEEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKH-PVLLFVKPARRGNGRPIKQL----VGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~e-vvQlY~~~~~~~~~~P~k~L----~gF~kv~L~pGes~~V~~~l~~ 741 (776)
.-+.|.|+|+|+|+-+-.- ..+..+.+.....-.|.... ..+--..|+||++.+..+....
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 4689999999988744321 11334444443222222111 1144567999999886655443
No 87
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=28.89 E-value=74 Score=28.40 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=31.8
Q ss_pred ceEEEEEEEEecCCCC------------CCceEEEEeecCCCCCCCCcccccceee-EEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMA------------GKHPVLLFVKPARRGNGRPIKQLVGFQS-VILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~------------G~evvQlY~~~~~~~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~ 741 (776)
+.+...|+|+|+|+.+ |.++.+++=...... ... ..+++-.= -.|+||++.++-|....
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~-g~~-~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQS-GNT-VTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEE-TTE-EEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEec-CCE-EEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 5688999999999865 334444432111111 011 12221111 14788888888777764
No 88
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=28.58 E-value=56 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.5
Q ss_pred ceEEEEEEEEecCCCCCCc
Q 004054 681 RKFLVTIGVKNHGEMAGKH 699 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~e 699 (776)
+.++.+++|+|+|+.....
T Consensus 41 d~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CEEEEEEEEEECCCCeeEe
Confidence 6899999999999988554
No 89
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=28.22 E-value=2.3e+02 Score=24.60 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=42.1
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecCCCCceEEcC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRARE 750 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 750 (776)
..+++.+++.|.+.....-.+++.+.+........ .-..+.+..++...+.++++. +....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVT-----QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEE-----EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEE-----eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 46778888899999998889999988875532211 223345677777766455544 34688877
No 90
>PRK13556 azoreductase; Provisional
Probab=28.09 E-value=1.4e+02 Score=30.28 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHh
Q 004054 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEA 527 (776)
Q Consensus 478 ~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~ 527 (776)
.++..+..+.||.+|++.=. + ++.+|..-+.+|+.+...
T Consensus 80 ~~~~~~~l~~AD~iVi~~P~---y--------n~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFPL---W--------NFTIPAVLHTYIDYLNRA 118 (208)
T ss_pred HHHHHHHHHHCCEEEEeccc---c--------ccCCcHHHHHHHHHHhcC
Confidence 44556778999999986521 1 456788778888888753
No 91
>PRK05086 malate dehydrogenase; Provisional
Probab=27.93 E-value=54 Score=35.75 Aligned_cols=56 Identities=27% Similarity=0.425 Sum_probs=32.9
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCCh---HHHHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPG---RQQELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~---~q~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
+..+.+|+||+++|... .++.+|.++- .. --.++++++.+. +.+-++++. .+|+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dll-~~N~~i~~~ii~~i~~~-~~~~ivivv-sNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDLF-NVNAGIVKNLVEKVAKT-CPKACIGII-TNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHh-CCCeEEEEc-cCchHH
Confidence 45578999999999643 2334554331 11 224556677666 444444444 689964
No 92
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=27.88 E-value=6.4e+02 Score=26.70 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=12.0
Q ss_pred HHhhcCCCeEEEcCchhHH
Q 004054 285 ARRQWGFHGYITSDCDAVS 303 (776)
Q Consensus 285 LR~e~gf~G~VvSD~~~~~ 303 (776)
|=++.||+.+.+.|...|.
T Consensus 27 l~e~aG~d~i~vGds~~~~ 45 (254)
T cd06557 27 LADEAGVDVILVGDSLGMV 45 (254)
T ss_pred HHHHcCCCEEEECHHHHHH
Confidence 3355677777777776553
No 93
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.55 E-value=55 Score=35.92 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChHH--HHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ--QELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q--~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..+.+|+||++.|... .++.+|.++.-.-.. .++...+.+.+++..|+++. ++|+|+.
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANTN 134 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHHH
Confidence 55689999999988642 234455332111111 23345555552345665555 5899763
No 94
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=27.50 E-value=2.2e+02 Score=29.79 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=35.4
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeE----EeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSV----ILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv----~L~pGes~~V~~~l~ 740 (776)
.++++|+|+++.+ ..||..+.+....... -|-=+ .|+||+.+++.|...
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~------pFivtPPlfRlep~~~~~lRI~~~ 97 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPA------PFLVMPPLFRLEANQQSQLRIVRT 97 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccC------CEEECCCeEEECCCCceEEEEEEC
Confidence 4788889999764 8999999865432111 13322 489999999998875
No 95
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=27.21 E-value=2e+02 Score=29.94 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=37.0
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeE----EeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSV----ILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv----~L~pGes~~V~~~l~ 740 (776)
.++++|+|+|+. ...||..+.+..... .|.+.=.-|-=+ .|+||+.++++|...
T Consensus 35 ~~si~i~N~~~~--pyLvQsWvd~~~~~~-~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~ 92 (226)
T PRK15218 35 DITVQLMNDGKR--SSLIQAWIDNGDTSL-PPEKLQVPFIMTPPVIRVAANSGQQLKIKKL 92 (226)
T ss_pred EEEEEEEcCCCC--cEEEEEEEeCCCCCC-CcccccCCEEECCCeEEECCCCceEEEEEEC
Confidence 578888999986 599999998754321 122111124333 489999999999864
No 96
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.12 E-value=1.2e+02 Score=20.95 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Q 004054 337 KHTKAAVKQKKLPESEIDRALHNLF 361 (776)
Q Consensus 337 ~~l~~av~~g~i~~~~id~av~Ril 361 (776)
..|.+...+|.||++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5688899999999999999988887
No 97
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=27.07 E-value=49 Score=34.14 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=42.0
Q ss_pred hHHHHHHcCCccEEEeeccccCCccc-ccCHHHHHHHHHhhcCCCeEEEcCchhH
Q 004054 249 PFESCVKQGRASGIMCAYNRVNGIPS-CADRNLLSKTARRQWGFHGYITSDCDAV 302 (776)
Q Consensus 249 pF~~ai~~g~~~~vM~sy~~vng~pa-~~s~~ll~~iLR~e~gf~G~VvSD~~~~ 302 (776)
-|+.|++..+. +||.+||.-.|.|- +.....+|.-|.+-..+-|+.+=|-.-+
T Consensus 157 I~k~Al~~nAa-avIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 157 IFKEALKYNAA-AVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHHhcch-hhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 37889998766 99999999988654 3455667889999999999888876533
No 98
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.73 E-value=2.4e+02 Score=27.70 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=25.3
Q ss_pred hcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 486 KGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 486 ~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
..+|+++|++|. +.|+.++.+..+. - +.-+++..|+.++.
T Consensus 98 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~-l-~~~v~~~vG~~~d~ 137 (171)
T cd06533 98 SGADILFVGLGA-----------------PKQELWIARHKDR-L-PVPVAIGVGGSFDF 137 (171)
T ss_pred cCCCEEEEECCC-----------------CHHHHHHHHHHHH-C-CCCEEEEeceeeEe
Confidence 457999888873 3688888888776 3 22233334655554
No 99
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=26.44 E-value=1.3e+02 Score=31.73 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=35.4
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcc----cccceeeE-EeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIK----QLVGFQSV-ILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k----~L~gF~kv-~L~pGes~~V~~~l~ 740 (776)
.++++|+|+|+. .-.||..+.+.... ..|.+ .+.-.==+ .|+||+.+.|.|...
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~-~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMN-TSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCC-CCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 478888999986 58999998653322 22322 12222233 499999999997654
No 100
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=26.28 E-value=73 Score=34.68 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCC--hHHHHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..+.||++|+++|... .++.+|.++-.- ..-.+.++++.+. ++..++++. ++|+++.
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~-~npvd~~ 127 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVV-TNPVDVM 127 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-CCchHHH
Confidence 35899999999998643 345555432100 0112334445555 344444444 5898753
No 101
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=26.13 E-value=1.1e+02 Score=31.88 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHHHHHcCCccEEEeeccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCCCc
Q 004054 250 FESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDV 329 (776)
Q Consensus 250 F~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~ 329 (776)
.+++.+.|+. +||.--.-|.-----.|++.| .++|++. +=-||-|.+ + .++.++ .+|++-|+|=
T Consensus 137 akrL~d~Gca-avMPlgsPIGSg~Gi~n~~~l-~~i~~~~--~vPvIvDAG-i----------G~pSda-a~AMElG~da 200 (247)
T PF05690_consen 137 AKRLEDAGCA-AVMPLGSPIGSGRGIQNPYNL-RIIIERA--DVPVIVDAG-I----------GTPSDA-AQAMELGADA 200 (247)
T ss_dssp HHHHHHTT-S-EBEEBSSSTTT---SSTHHHH-HHHHHHG--SSSBEEES--------------SHHHH-HHHHHTT-SE
T ss_pred HHHHHHCCCC-EEEecccccccCcCCCCHHHH-HHHHHhc--CCcEEEeCC-C----------CCHHHH-HHHHHcCCce
Confidence 4667778987 999976666322233577777 4677887 445666874 2 234454 5799999997
Q ss_pred cCcc----------hhHHHHHHHHHcCC
Q 004054 330 NCGS----------FLQKHTKAAVKQKK 347 (776)
Q Consensus 330 ~~~~----------~~~~~l~~av~~g~ 347 (776)
++.. .+.++...||+.|+
T Consensus 201 VLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 201 VLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred eehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 7642 24566777777664
No 102
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=26.04 E-value=1.7e+02 Score=30.54 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=34.4
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCC-CCcccccceee----EEeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNG-RPIKQLVGFQS----VILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~-~P~k~L~gF~k----v~L~pGes~~V~~~l~ 740 (776)
.++++|+|+|+. .-.||..+.+...... .| |-= ..|+||++++|+|...
T Consensus 39 ~~si~i~N~~~~--p~LvQswv~~~~~~~~~~p------FivtPPlfrl~p~~~q~lRI~~~ 92 (229)
T PRK15211 39 NISFEVTNQADQ--TYGGQVWIDNTTQGSSTVY------MVPAPPFFKVRPKEKQIIRIMKT 92 (229)
T ss_pred eEEEEEEeCCCC--cEEEEEEEecCCCCCccCC------EEEcCCeEEECCCCceEEEEEEC
Confidence 578889999986 4899999976432111 11 322 2589999999998765
No 103
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=26.02 E-value=60 Score=35.26 Aligned_cols=54 Identities=28% Similarity=0.438 Sum_probs=30.9
Q ss_pred hhcCCEEEEEEecCCcccccccCCCCCCCChHHHH----HHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 485 AKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQE----LITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 485 a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
++++|++|+++|... .++.+|.++ -....+ .++++.+. +++.++++. .+|+++-
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~l--~~~N~~iv~~i~~~I~~~-~p~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSREDL--LSMNAGIVREVTGRIMEH-SPNPIIVVV-SNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCcHHHH
Confidence 589999999998643 234444332 122233 34455555 444554444 5899873
No 104
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=25.91 E-value=1.8e+02 Score=30.21 Aligned_cols=53 Identities=6% Similarity=0.125 Sum_probs=32.2
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeE-EeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSV-ILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~ 740 (776)
.++++|+|+++. --..||-.+.+.......| +.-.==+ .|+||+.+++.|...
T Consensus 42 ~~si~l~N~~~~-~~~LvQsWv~~~~~~~~~p---fivtPPlfrl~p~~~q~lRIi~~ 95 (229)
T PRK15195 42 QTSLAIRNSHTN-ERYLVNSWIENSSGVKEKS---FIVTPPLFVSEPKSENTLRIIYA 95 (229)
T ss_pred eEEEEEEeCCCC-ccEEEEEEecCCCCCccCC---EEEcCCeEEECCCCceEEEEEEC
Confidence 488999999752 1255888886543221111 1111122 599999999997654
No 105
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=25.89 E-value=1.4e+02 Score=27.93 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCEEEEEEe
Q 004054 479 DKAVDIAKGADHVVLMMG 496 (776)
Q Consensus 479 ~~a~~~a~~aD~vIv~~g 496 (776)
.++.+.++.+|++|+++.
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 466788899999998875
No 106
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=25.89 E-value=61 Score=35.44 Aligned_cols=55 Identities=33% Similarity=0.443 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEecCCcccccccCCCCCCCChHH----HHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
+..++||+||++.|... .+|.+|.++- ..- .+.++++.+. +.+.++++. ++|.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dll--~~N~~i~~~i~~~i~~~-~~~~~vivv-sNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDLV--EKNLKIFKSIVGEVMAS-GFDGIFLVA-SNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEc-cCcHHH
Confidence 45789999999988642 3455665431 111 2334555555 445555444 689976
No 107
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=25.83 E-value=4.4e+02 Score=24.65 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=34.9
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEe--ecCCCCCCCCcccccceeeEE-eCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFV--KPARRGNGRPIKQLVGFQSVI-LNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~--~~~~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~ 741 (776)
++..|-++|+|+|..+.+. ||+=- +.....++.-. +-+. |.-||+++-.|-++.
T Consensus 49 gqyyVpF~V~N~gg~TAas-V~V~geL~~~~~v~E~~e------~tiDfl~g~e~~~G~~IF~~ 105 (122)
T TIGR02588 49 GQYYVPFAIHNLGGTTAAA-VNIRGELRQAGAVVENAE------VTIDYLASGSKENGTLIFRS 105 (122)
T ss_pred CEEEEEEEEEeCCCcEEEE-EEEEEEEccCCceeEEee------EEEEEcCCCCeEeEEEEEcc
Confidence 5689999999999876544 44433 33333332222 3343 788888888888875
No 108
>PRK13555 azoreductase; Provisional
Probab=25.64 E-value=1.5e+02 Score=30.36 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHH
Q 004054 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAE 526 (776)
Q Consensus 478 ~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~ 526 (776)
.++..+..+.||.+|++.=. + ++.+|..-+..|+.+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~---~--------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPL---W--------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCc---c--------cccchHHHHHHHHHHhc
Confidence 45566778999999886521 1 34577777777777764
No 109
>PRK13792 lysozyme inhibitor; Provisional
Probab=25.56 E-value=47 Score=31.24 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHHHHHhhccccC
Q 004054 2 IFHKLSLVFPLLCLCFTSLLTRVD 25 (776)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (776)
|+|.++++++.+.++|++|+....
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~~~~ 24 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGGSDD 24 (127)
T ss_pred ChhHHHHHHHHHHhheecccCCCC
Confidence 567777777777778888887533
No 110
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=25.28 E-value=1.2e+02 Score=29.27 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=32.8
Q ss_pred ccccceeeEEeCCCCEEEEEEEecCCCC----c-eEEcCC-CcEEE-----eCcEEEEEEe
Q 004054 717 KQLVGFQSVILNAKEKAEIVFELSPCES----L-SRARED-GLMVI-----EEGTHFLVVG 766 (776)
Q Consensus 717 k~L~gF~kv~L~pGes~~V~~~l~~~~~----l-s~~d~~-~~~~~-----e~G~y~i~vG 766 (776)
..|.+-+++.|.|||++++++.++.... + .|.|.+ ..|.. +.+.+.+.|.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~~a~~igVvA~fr~~~~~~Wr~~~~~~~~~~~~~~v~ 140 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDPGTRYIGVVAAYRDIDNAEWRVVYKVPPKGKYKIDVM 140 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCCCCeEEEEEEEeecCCCCceEEEEecCCCCceeEEEE
Confidence 4678888899999999999999986211 1 244555 56722 2455555443
No 111
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=25.17 E-value=1.6e+02 Score=31.06 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=35.1
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceee---E-EeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQS---V-ILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~k---v-~L~pGes~~V~~~l~ 740 (776)
.++++|+|+|+. .-.+|..+.+.... ..|.+.=..|-= + .|+||+++.|.|...
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~-~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 99 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDN-AEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT 99 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCc-cCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence 578888999986 58999999653322 123221012322 2 489999999998654
No 112
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=25.13 E-value=57 Score=35.37 Aligned_cols=55 Identities=27% Similarity=0.440 Sum_probs=32.2
Q ss_pred HhhcCCEEEEEEecCCcccccccCCCCCCCChHH----HHHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 484 IAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQ----QELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 484 ~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
.++.+|++|++.|... .+|.+|.++- ..- .+..+++.+. ++..++++. ++|+++-
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dll--~~N~~i~~~~~~~i~~~-~~~~~vivv-sNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDLL--EKNAKIMKSIVPKIKAS-GFDGIFLVA-SNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEe-cChHHHH
Confidence 4689999999998642 3456665431 111 2334455554 445555544 6899763
No 113
>PRK09810 entericidin A; Provisional
Probab=24.90 E-value=69 Score=23.95 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=11.5
Q ss_pred CchhhHHHHHHHHHHHHHhhcc
Q 004054 1 MIFHKLSLVFPLLCLCFTSLLT 22 (776)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (776)
||++.++++ +++++.|++|-.
T Consensus 1 mMkk~~~l~-~~~~~~L~aCNT 21 (41)
T PRK09810 1 MMKRLIVLV-LLASTLLTGCNT 21 (41)
T ss_pred ChHHHHHHH-HHHHHHHhhhhh
Confidence 455555544 344556666655
No 114
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=24.79 E-value=1.5e+02 Score=25.28 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=28.8
Q ss_pred EEeCCCCEEEEEEEecCCCCceEEcCCCcEEEeCcEEEEEEe
Q 004054 725 VILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFLVVG 766 (776)
Q Consensus 725 v~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG 766 (776)
-.|.||++..|+|.+.. +.+ +.+..|++++..| -++-+|
T Consensus 44 ~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g-~tva~G 82 (87)
T cd03708 44 DVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG-RTKGVG 82 (87)
T ss_pred hhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-CcEEEE
Confidence 45899999999999543 346 5566678888888 566666
No 115
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.55 E-value=76 Score=34.56 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEEecCCcccccccC--CCCCCCChHHH----HHHHHHHHhcCCCEEEEEeCCCccccc
Q 004054 483 DIAKGADHVVLMMGLDQTQEKEELD--RVDLVLPGRQQ----ELITRVAEAAKKPVILVLLCGGPVDIT 545 (776)
Q Consensus 483 ~~a~~aD~vIv~~g~~~~~~~Eg~D--r~~l~Lp~~q~----~Li~~va~~~~~pvIvVl~~g~P~~l~ 545 (776)
+..++||+||++.|... ..|.+ |.++ =..-. +.++++.+. +.+.|+++. .+|+|+-
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dl--l~~N~~I~~~i~~~i~~~-~p~~i~ivv-sNPvDv~ 125 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDL--AQTNAKIIREIMGNITKV-TKEAVIILI-TNPLDIA 125 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHH--HHHHHHHHHHHHHHHHHh-CCCeEEEEe-cCcHHHH
Confidence 56789999999988642 23444 2322 12222 334455555 455555544 6899873
No 116
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.45 E-value=54 Score=35.81 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=32.7
Q ss_pred HhhcCCEEEEEEecCCcccccccCCCCCCCC--hHHHHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 484 IAKGADHVVLMMGLDQTQEKEELDRVDLVLP--GRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 484 ~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
..++||+||++.|... .+|.+|.++--- +--.++.+++.+. +.+-++++. ++|+++
T Consensus 68 ~~~~adivvitaG~~~---k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~ 125 (312)
T cd05293 68 VTANSKVVIVTAGARQ---NEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVV-SNPVDI 125 (312)
T ss_pred HhCCCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEc-cChHHH
Confidence 4789999999988643 245566443100 0122345556565 455555555 589976
No 117
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=23.94 E-value=2.2e+02 Score=29.04 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHh
Q 004054 479 DKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEA 527 (776)
Q Consensus 479 ~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~ 527 (776)
++.++....||.+|++.. .-++..|..-...|+.++.+
T Consensus 79 d~l~~ef~aAD~vVi~~P-----------M~Nf~iPa~LK~yiD~i~~a 116 (202)
T COG1182 79 DKLLEEFLAADKVVIAAP-----------MYNFNIPAQLKAYIDHIAVA 116 (202)
T ss_pred HHHHHHHHhcCeEEEEec-----------ccccCCCHHHHHHHHHHhcC
Confidence 445666788999988663 23788899889999999876
No 118
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=23.75 E-value=2e+02 Score=29.96 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=52.3
Q ss_pred HHHHHcCCccEEEeeccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCCCcc
Q 004054 251 ESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVN 330 (776)
Q Consensus 251 ~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~ 330 (776)
|++.+.|+. +||.--.-|..----.|++.| .+++++. +-=||-|.+ + .++.+| ++|++-|+|=+
T Consensus 145 rrLee~Gca-avMPl~aPIGSg~G~~n~~~l-~iiie~a--~VPviVDAG-i----------G~pSdA-a~aMElG~DaV 208 (262)
T COG2022 145 RRLEEAGCA-AVMPLGAPIGSGLGLQNPYNL-EIIIEEA--DVPVIVDAG-I----------GTPSDA-AQAMELGADAV 208 (262)
T ss_pred HHHHhcCce-EeccccccccCCcCcCCHHHH-HHHHHhC--CCCEEEeCC-C----------CChhHH-HHHHhccccee
Confidence 455567876 999866555321223477777 5778886 667888885 1 234454 57999999977
Q ss_pred Ccc----------hhHHHHHHHHHcCC
Q 004054 331 CGS----------FLQKHTKAAVKQKK 347 (776)
Q Consensus 331 ~~~----------~~~~~l~~av~~g~ 347 (776)
|.. .+.++..-||+.|+
T Consensus 209 L~NTAiA~A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 209 LLNTAIARAKDPVAMARAFALAVEAGR 235 (262)
T ss_pred ehhhHhhccCChHHHHHHHHHHHHHhH
Confidence 642 24456667777664
No 119
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=23.25 E-value=27 Score=38.74 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred eEEEEEEEEecCCCCC-------------CceEEEEeecCCC--CCCCCcccccceee---EEeCCCCEEEEEEEecCCC
Q 004054 682 KFLVTIGVKNHGEMAG-------------KHPVLLFVKPARR--GNGRPIKQLVGFQS---VILNAKEKAEIVFELSPCE 743 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G-------------~evvQlY~~~~~~--~~~~P~k~L~gF~k---v~L~pGes~~V~~~l~~~~ 743 (776)
...|.++|||||+.+= .+=|++|-....- ...++.-.+-+... +.|+||||.+++|.+-...
T Consensus 39 nt~VkA~VTNtG~e~l~llK~ntilD~~Pv~kv~V~~~g~~V~F~Gi~~~~~~~~L~~d~F~~L~pG~sve~~fDiA~~~ 118 (359)
T PF02102_consen 39 NTRVKATVTNTGSEDLKLLKYNTILDSAPVKKVSVYKDGKEVPFTGIRLRYDTSGLTEDAFQTLAPGESVEVEFDIAETH 118 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCcceEEEeeceecCCCceeEEEEEcCCcccccccEEEEEecCCCCHHHceecCCCCeEEEEEcchhee
Confidence 3579999999998652 1234455221000 01133333333222 3599999999999987655
Q ss_pred Cce
Q 004054 744 SLS 746 (776)
Q Consensus 744 ~ls 746 (776)
||+
T Consensus 119 dLs 121 (359)
T PF02102_consen 119 DLS 121 (359)
T ss_dssp ---
T ss_pred ecC
Confidence 553
No 120
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=23.17 E-value=2.1e+02 Score=26.03 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=29.4
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccc-cceeeEEeCCCCEEEEEEEecC
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQL-VGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L-~gF~kv~L~pGes~~V~~~l~~ 741 (776)
.-+++|.|...-+- .+++=+..+ |.-+| .+...+.|+|||++++.|.|..
T Consensus 34 ~Y~lkl~Nkt~~~~--~~~i~~~g~------~~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPR--TYTISVEGL------PGAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-E--EEEEEEES-------SS-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCE--EEEEEEecC------CCeEEECCCcceEECCCCEEEEEEEEEE
Confidence 47788899855432 345555543 23345 5778889999999999998876
No 121
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=22.65 E-value=1.1e+02 Score=34.55 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCCEEEEEeC-CCccccccccc-------cCCcceEEeccCCCchhHHHHHHHHhCCC
Q 004054 518 QELITRVAEAAKKPVILVLLC-GGPVDITFAKY-------DRNIGSILWAGYPGEAGAVALAEVIFGDH 578 (776)
Q Consensus 518 ~~Li~~va~~~~~pvIvVl~~-g~P~~l~~~~~-------~~~v~AiL~a~~~G~e~g~AlAdVL~G~~ 578 (776)
.++|++..+.+++||++|.+| |+++...++.. ...|+++|...-|=.-+.+|+..+++|+.
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~~ 175 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGDN 175 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhhh
Confidence 466777766668899999986 66655433221 13688888766665556789999999993
No 122
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=22.39 E-value=3e+02 Score=27.02 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEe
Q 004054 478 IDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLL 537 (776)
Q Consensus 478 ~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~ 537 (776)
..+....++.+|.+|+++... +| +.....+.++.+... +.|+|||++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~~~~-~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKILREL-GIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHHHHT-T-SEEEEEE
T ss_pred eecccceecccccceeeeecc-----cc-------ccccccccccccccc-ccceEEeee
Confidence 455667788999999999632 12 223345566666665 788888877
No 123
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=22.34 E-value=6.5e+02 Score=24.27 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=32.4
Q ss_pred ceEEEEEEEEecCCCC---CCceEEEEeecCCCCCCCCcccccce-----eeEEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMA---GKHPVLLFVKPARRGNGRPIKQLVGF-----QSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~---G~evvQlY~~~~~~~~~~P~k~L~gF-----~kv~L~pGes~~V~~~l~~ 741 (776)
+..+.++=|||||+.. -...+|+.+.-..- .|. =..| .-+.|.||+=-. ++++..
T Consensus 68 g~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv---~~a--~~~~~~~~gs~i~l~PG~Vg~-ev~vn~ 130 (154)
T COG3354 68 GPYTYTFYIKNTGSDSIAFDNTSITVLIDGNIV---TPA--YVTFTSVNGSSIRLSPGQVGR-EVTVNE 130 (154)
T ss_pred CceEEEEEEecCCCcccccCCCeEEEEEcCcEe---ccc--eEEEEecCCCeeEecCCceee-EEEecc
Confidence 4577889999999853 44567877754211 110 0112 223388998875 556653
No 124
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.28 E-value=4.1e+02 Score=26.04 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=27.5
Q ss_pred HHHHHHHh--hcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCcccc
Q 004054 478 IDKAVDIA--KGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDI 544 (776)
Q Consensus 478 ~~~a~~~a--~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l 544 (776)
.++.++.+ ..+|+++|.+|. +.|+.++.+....-+.+ +++..|+.++.
T Consensus 90 ~~~i~~~I~~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~ 139 (172)
T PF03808_consen 90 EEAIINRINASGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF 139 (172)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence 34444443 356888777763 35778888777663333 33344666654
No 125
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.22 E-value=4.6e+02 Score=28.31 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCceeeEeecccccc
Q 004054 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (776)
Q Consensus 183 ~~~~a~a~v~GlQ~~g~~~~~~~~~~~v~a~~KHFpg~ 220 (776)
++.++..||+-+.+.+ -.|.+|=|.+||.
T Consensus 117 IAT~T~~~v~~~~~~~---------~~i~~TRKt~Pg~ 145 (288)
T PRK07428 117 IATLTRQYVEKIADLP---------TQLVDTRKTTPGL 145 (288)
T ss_pred HHHHHHHHHHHhcCCC---------eEEEecCCCCCcc
Confidence 6777778888774432 2488999999985
No 126
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=21.61 E-value=3.6e+02 Score=29.11 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=37.5
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeE----EeCCCCEEEEEEEecCC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSV----ILNAKEKAEIVFELSPC 742 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv----~L~pGes~~V~~~l~~~ 742 (776)
..+++-|.++|.|+ ....=.++...-.-..--..-+++|..+ .++||+..++.-.+.+.
T Consensus 99 ~~~~~LvgftN~g~---~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~ 161 (285)
T PF03896_consen 99 EPVKFLVGFTNKGS---EPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPS 161 (285)
T ss_pred CeEEEEEEEEeCCC---CCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecc
Confidence 46789999999997 2333333332111111234456777777 38999999998888653
No 127
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.56 E-value=2.7e+02 Score=32.74 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=35.0
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeecCCCCCCC-------Cc----cccc---cee--eEEeCCCCEEEEEEEecC
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGR-------PI----KQLV---GFQ--SVILNAKEKAEIVFELSP 741 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~-------P~----k~L~---gF~--kv~L~pGes~~V~~~l~~ 741 (776)
..+.+++|+|+++.+ -.|.|+=+.|.+.... |. ...+ |-- ++.|+|||+++++|....
T Consensus 443 ~~~~~i~v~N~~~~~--v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v 516 (525)
T TIGR02231 443 EYAYRITLKNLRKEP--ERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKV 516 (525)
T ss_pred EEEEEEEEEcCCCCc--eEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEE
Confidence 467889999997763 3344444556542211 21 1111 221 456999999999988765
No 128
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=21.44 E-value=2.4e+02 Score=29.23 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=34.1
Q ss_pred EEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceee----EEeCCCCEEEEEEEec
Q 004054 684 LVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQS----VILNAKEKAEIVFELS 740 (776)
Q Consensus 684 ~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~ 740 (776)
.++++|+|+|+. .-.||..+.+..... .+. .-|-= ..|+||+++.|.|...
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~-~~~---~pFivtPPl~rl~p~~~q~lRI~~~ 90 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQV-TNK---QAFIITPPLFRLDAGQKNSIRVIRS 90 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCC-CCC---CCEEEcCCeEEECCCCceEEEEEEC
Confidence 588999999986 488999997643211 111 11221 2589999999998664
No 129
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=21.36 E-value=2.2e+02 Score=25.12 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=29.3
Q ss_pred ceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEEEEEecC
Q 004054 681 RKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEIVFELSP 741 (776)
Q Consensus 681 ~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 741 (776)
......++|+|+++.. -+-.+-.+.+..=..+|.. =.|+|||+.+|.|++..
T Consensus 18 ~~~~~~l~l~N~s~~~--i~fKiktt~~~~y~v~P~~-------G~i~p~~~~~i~I~~~~ 69 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKP--IAFKIKTTNPNRYRVKPSY-------GIIEPGESVEITITFQP 69 (109)
T ss_dssp S-EEEEEEEEE-SSSE--EEEEEEES-TTTEEEESSE-------EEE-TTEEEEEEEEE-S
T ss_pred ceEEEEEEEECCCCCc--EEEEEEcCCCceEEecCCC-------EEECCCCEEEEEEEEEe
Confidence 3577889999998762 2333333333221223431 24999999999999986
No 130
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=21.29 E-value=1.2e+02 Score=29.41 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.8
Q ss_pred EEeCCCCEEEEEEEecC
Q 004054 725 VILNAKEKAEIVFELSP 741 (776)
Q Consensus 725 v~L~pGes~~V~~~l~~ 741 (776)
+.|+||+|.+++..++.
T Consensus 116 v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 116 VTLAPGKSGELVVVFTG 132 (158)
T ss_pred eEeCCCCcEEEEEEecC
Confidence 57999999999988874
No 131
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=20.96 E-value=7.1e+02 Score=26.85 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCceeeEeecccccc
Q 004054 183 TGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAY 220 (776)
Q Consensus 183 ~~~~a~a~v~GlQ~~g~~~~~~~~~~~v~a~~KHFpg~ 220 (776)
++.+...||+-+++.+ ..-.|.+|-|.+||.
T Consensus 106 IAT~T~~~V~~~~~~~-------~~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRERY-------PDGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHhhC-------CCcEEEecCcCCCch
Confidence 6778888888887533 112499999999995
No 132
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.81 E-value=2.3e+02 Score=30.71 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=35.8
Q ss_pred eEEEEEEEEecCCCCCCceEEEEeecCCCCC-------CCC-c---cccccee--eEEeCCCCEEEEEEEecC
Q 004054 682 KFLVTIGVKNHGEMAGKHPVLLFVKPARRGN-------GRP-I---KQLVGFQ--SVILNAKEKAEIVFELSP 741 (776)
Q Consensus 682 ~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~-------~~P-~---k~L~gF~--kv~L~pGes~~V~~~l~~ 741 (776)
....+++|+|..+.+=+ |+|.=+-|.+.. ..| . .+-.|.- ++.|+|||+++++|....
T Consensus 243 ~~~~~itv~N~~~~~v~--v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVT--VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEV 313 (317)
T ss_pred EEEEEEEEECCCCCCEE--EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEE
Confidence 46789999999754433 555555555431 111 1 2333332 356999999999988764
No 133
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=20.68 E-value=1.9e+02 Score=27.49 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhccccCCCC
Q 004054 8 LVFPLLCLCFTSLLTRVDSTQ 28 (776)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (776)
+.+++|.|+|++|+.....+.
T Consensus 4 l~~~LL~L~LsGCS~l~~tp~ 24 (133)
T PRK10781 4 LPICLLALMLTGCSMLSRSPV 24 (133)
T ss_pred HHHHHHHHHHhhccccCcCCC
Confidence 445577788888887544333
No 134
>PRK00170 azoreductase; Reviewed
Probab=20.42 E-value=1.9e+02 Score=28.85 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=26.5
Q ss_pred cHHHHHHHhhcCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHH
Q 004054 477 SIDKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVA 525 (776)
Q Consensus 477 ~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va 525 (776)
...+..+..+.||.+|++.=. + ...+|+.-+.+|+.+.
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP~--y---------~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAPM--Y---------NFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHHHHHHHCCEEEEeecc--c---------ccCCcHHHHHHHHhhe
Confidence 455667788999999986521 1 3456777777888775
Done!