BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004055
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINY 102
LKRA ELK + N F+ KDY A++ Y A+ L P A+++ NR+ ++ + Y
Sbjct: 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGY 65
Query: 103 ETVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
+ + T A+++ +++ A+GK+ A++D + ++ V+P+ +DA
Sbjct: 66 --ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINY 102
LKRA ELK + N F+ KDY A++ Y A+ L +P A+++ NR+ ++ + Y
Sbjct: 18 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGY 73
Query: 103 ETVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
+ + T A+++ +++ A+GK+ A++D + ++ V+P+ +DA
Sbjct: 74 --ALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 125
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINY 102
LKRA ELK + N F+ KDY A++ Y A+ L P A+++ NR+ ++ + Y
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGY 58
Query: 103 ETVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
+ + T A+++ +++ A+GK+ A++D + ++ V+P+ +DA
Sbjct: 59 --ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 48 ELKEEGNKRFQNKDYVGALEQYDNALRL--TPKTHPDRAVFHSNRAACLMQMKPINYETV 105
+L++EGN+ F+ DY GAL Y AL L TP+ D+AV H NRAAC ++++ +Y+
Sbjct: 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLE--DYDKA 84
Query: 106 IAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165
E + A++ V + +G+ + A+ D+Q + +EP ++ E LR
Sbjct: 85 ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA---LRN 141
Query: 166 ALGP 169
GP
Sbjct: 142 ISGP 145
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAE 108
+K +GN+ FQ DY A++ Y A++ PK A +SNRAAC ++ + ++ + +
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKL--LEFQLALKD 72
Query: 109 CTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166
C +Q++P F+ +A+ Y AM Q L ++ + ++A + +R A
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETV 105
A E K +GN+ F+ DY A+ Y+ A+ K P+ A+ +SNRAACL ++ + ++
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAV----KRDPENAILYSNRAACLTKL--MEFQRA 66
Query: 106 IAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR 161
+ +C +++ +F+ A+ ++ A + + L V+P++ +A E R
Sbjct: 67 LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYE 103
K A LK++GN+ F+NK Y A++ Y+ AL L K P VF+SN +AC + + + +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDP---VFYSNLSACYVSVGDL--K 56
Query: 104 TVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVL 146
V+ T AL+++P + + +GK+ AM D+ VL
Sbjct: 57 KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETV 105
A +LK GN F K++ A++ Y A+ L P+ VF+SN +AC + + E V
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDL--EKV 74
Query: 106 IAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVL 146
I T AL+++P +++G + AM D+ VL
Sbjct: 75 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETV 105
A +LK GN F K++ A++ Y A+ L P+ VF+SN +AC + + E V
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDL--EKV 78
Query: 106 IAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVL 146
I T AL+++P +++G + AM D+ VL
Sbjct: 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETV 105
A ELKE+GN+ F + Y A Y A+ P AV+++NRA C ++M+ E
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ--QPEQA 62
Query: 106 IAECTMALQV 115
+A+C AL++
Sbjct: 63 LADCRRALEL 72
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETV 105
A ELKE+GN+ F + Y A Y A+ P AV+++NRA C ++M+ E
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ--QPEQA 57
Query: 106 IAECTMALQV 115
+A+C AL++
Sbjct: 58 LADCRRALEL 67
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETV 105
A LK EGN++ + +++ A+ Y A+ L P AV+ NRAA ++ NY
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLG--NYAGA 65
Query: 106 IAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPN---HRDALEIAR- 161
+ +C A+ + P + ++ K+ A+ + L ++P+ ++ L+IA
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Query: 162 RLRTA 166
+LR A
Sbjct: 126 KLREA 130
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYET 104
+A E + EG + F D+ A++ Y + K P+ A +SNRAA L ++ +++
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMI----KRAPEDARGYSNRAAALAKL--MSFPE 56
Query: 105 VIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDV 143
IA+C A++ P FV A+ +Y A++ +
Sbjct: 57 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 95
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYET 104
+A E + EG + F D+ A++ Y + K P+ A +SNRAA L ++ +++
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMI----KRAPEDARGYSNRAAALAKL--MSFPE 191
Query: 105 VIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDV 143
IA+C A++ P FV A+ +Y A++ +
Sbjct: 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAEC 109
K EGNK ++ + + A+E Y+ A L H D + +NRAA + + YET I+
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWEL----HKD-ITYLNNRAAA--EYEKGEYETAISTL 61
Query: 110 TMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVE----PNHRDALEIARRLRT 165
A++ F IG + D++ + HR A +I +LR
Sbjct: 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-DILTKLRN 120
Query: 166 ALGPRQEAQQDLQSRPSPA 184
A ++A+ + P A
Sbjct: 121 AEKELKKAEAEAYVNPEKA 139
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETV 105
A K GN ++ DY A+E Y AL L P A ++ A K +Y+
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNA--SAWYNLGNAY----YKQGDYQKA 62
Query: 106 IAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
I AL++ P + G Y+ A++D Q L ++PN+ A
Sbjct: 63 IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINY 102
+++ +ELKE+GNK + AL+ Y A++L P H V +SNR+A K +Y
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAY--AKKGDY 54
Query: 103 ETVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNH 153
+ + + ++P + + + ++E A + + L E N+
Sbjct: 55 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIA 107
+LK EGN K+Y A++ Y AL + P +P ++ SNRAA +E
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANP---IYLSNRAAAYSASG--QHEKAAE 66
Query: 108 ECTMALQVQPRF 119
+ +A V P++
Sbjct: 67 DAELATVVDPKY 78
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 53 GNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA 112
GN ++ DY A+E Y AL L P++ A ++ A K +Y+ I A
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNA----YYKQGDYDEAIEYYQKA 61
Query: 113 LQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
L++ PR + G Y+ A++ Q L ++P +A
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 53 GNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA 112
GN ++ DY A+E Y AL L P++ A ++ A K +Y+ I A
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNA----YYKQGDYDEAIEYYQKA 95
Query: 113 LQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEP 151
L++ PR + G Y+ A++ Q L ++P
Sbjct: 96 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 53 GNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA 112
GN ++ DY A+E Y AL L P A ++ A K +Y+ I A
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNA----YYKQGDYDEAIEYYQKA 69
Query: 113 LQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
L++ P + G Y+ A++ Q L ++PN+ +A
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 13/132 (9%)
Query: 36 DLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL-----------TPKTHPDRA 84
+++S L+++ +KE G F+ Y AL QY + K R
Sbjct: 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196
Query: 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQ 144
H N A C ++++ + I C AL++ A+ +E+A D Q
Sbjct: 197 ASHLNLAMCHLKLQA--FSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQ 254
Query: 145 VLLGVEPNHRDA 156
+L + PN++ A
Sbjct: 255 KVLQLYPNNKAA 266
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 49 LKEEGNKRFQNKDYVGALEQYDNALRL-----------TPKTHPDRAVFHSNRAACLMQM 97
+KE G F+ Y AL QY + K R H N A C +++
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 98 KPINYETVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
+ + I C AL++ A+ +E+A D Q +L + PN++ A
Sbjct: 210 QA--FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 53 GNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA 112
GN ++ DY A+E Y AL L P A ++ A K +Y+ I A
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNA--EAWYNLGNA----YYKQGDYDEAIEYYQKA 69
Query: 113 LQVQPRFVXXXXXXXXXFDAIGKYEMAMQDVQVLLGVEPNHRDA 156
L++ P + G Y+ A++ Q L + PN+ +A
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 35 VDL-DSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLT------------PKTHP 81
VDL D L + +LK GN F+++++ A+++Y LR K P
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270
Query: 82 DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVXXXXXXXXXFDAIGKYEMAMQ 141
N AC ++M +++ + C AL++ P + + +Y+ A+
Sbjct: 271 VALSCVLNIGACKLKMS--DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328
Query: 142 DVQ 144
D++
Sbjct: 329 DLK 331
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAEC 109
K+ GN ++ KD+ A YD A+ L P F++N+AA + K + + C
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKK--FAECVQFC 65
Query: 110 TMALQV 115
A++V
Sbjct: 66 EKAVEV 71
>pdb|1WI0|A Chain A, Solution Structure Of The Pb1 Domain Of Mouse Mitogen
Activated Protein Kinase Kinase 5 (Map2k5)
Length = 113
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 313 FKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELR 351
F+ + +++ + P + + +Y+D DGD +T+ E++
Sbjct: 41 FRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 79
>pdb|1YR1|A Chain A, Structure Of The Major Extracytoplasmic Domain Of The
Trans Isomer Of The Bacterial Cell Division Protein
Divib From Geobacillus Stearothermophilus
pdb|2ALJ|A Chain A, Structure Of The Cis Confomer Of The Major
Extracytoplasmic Domain Of The Bacterial Cell Division
Protein Divib From Geobacillus Stearothermophilus
Length = 119
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 291 WRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAEL 350
WR + VYD R P+ + + L++ +K PS VL+ +KD D AEL
Sbjct: 4 WRRIAYVYD---RQTFFPLLENGRLLKQEGTKTAPSDAPVLVGWKDGDAIAEMTGQLAEL 60
Query: 351 RLAESASDSLMTKEPEADKSDSV 373
A + S + +P + D V
Sbjct: 61 PAAVLGAMSEIHYKPTREYEDRV 83
>pdb|2NPT|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2NPT|C Chain C, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2O2V|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 3 (Map3k3b-Phox)
Length = 106
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 313 FKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELR 351
F+ + +++ + P + + +Y+D DGD +T+ E++
Sbjct: 39 FRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 77
>pdb|4IC7|E Chain E, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|B Chain B, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
Length = 126
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 313 FKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELR 351
F+ + +++ + P + + +Y+D DGD +T+ E++
Sbjct: 28 FRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,437,878
Number of Sequences: 62578
Number of extensions: 726135
Number of successful extensions: 1424
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 46
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)