Query 004055
Match_columns 776
No_of_seqs 305 out of 2159
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4151 Myosin assembly protei 100.0 1.8E-87 3.8E-92 765.8 28.6 657 1-756 1-679 (748)
2 cd06408 PB1_NoxR The PB1 domai 99.9 8.7E-23 1.9E-27 180.3 8.2 86 290-381 1-86 (86)
3 cd06401 PB1_TFG The PB1 domain 99.8 1.8E-19 3.8E-24 156.8 8.9 64 294-357 3-71 (81)
4 KOG0553 TPR repeat-containing 99.8 8.8E-18 1.9E-22 177.4 14.6 125 41-171 76-200 (304)
5 cd06402 PB1_p62 The PB1 domain 99.7 1.5E-17 3.3E-22 147.8 10.3 70 299-382 13-86 (87)
6 KOG4626 O-linked N-acetylgluco 99.7 8.9E-16 1.9E-20 172.7 23.7 169 44-218 114-284 (966)
7 KOG0547 Translocase of outer m 99.7 9.4E-16 2E-20 169.5 17.7 103 37-145 106-208 (606)
8 TIGR00990 3a0801s09 mitochondr 99.7 5.5E-15 1.2E-19 173.1 24.5 110 35-151 116-225 (615)
9 KOG0543 FKBP-type peptidyl-pro 99.6 3.1E-15 6.6E-20 163.7 16.4 140 34-175 196-346 (397)
10 TIGR00990 3a0801s09 mitochondr 99.6 1.6E-14 3.5E-19 169.2 22.0 168 45-218 330-499 (615)
11 smart00666 PB1 PB1 domain. Pho 99.6 2.2E-15 4.8E-20 131.6 9.6 79 292-381 2-81 (81)
12 PRK11189 lipoprotein NlpI; Pro 99.6 2.5E-14 5.5E-19 153.6 19.5 169 44-219 62-269 (296)
13 PF00564 PB1: PB1 domain; Int 99.6 4.3E-15 9.3E-20 130.3 9.1 81 291-382 1-83 (84)
14 KOG0551 Hsp90 co-chaperone CNS 99.6 3.2E-14 6.9E-19 151.9 16.7 270 44-381 79-368 (390)
15 KOG4626 O-linked N-acetylgluco 99.6 1.2E-14 2.5E-19 163.9 13.0 169 45-219 251-421 (966)
16 KOG4234 TPR repeat-containing 99.6 3.4E-14 7.3E-19 143.0 13.5 127 43-171 92-219 (271)
17 TIGR02521 type_IV_pilW type IV 99.5 7.9E-13 1.7E-17 130.0 21.4 166 44-215 29-198 (234)
18 cd05992 PB1 The PB1 domain is 99.5 3.1E-14 6.7E-19 124.0 9.6 78 292-380 1-80 (81)
19 cd06404 PB1_aPKC PB1 domain is 99.5 3.6E-14 7.9E-19 124.2 9.9 66 292-357 1-68 (83)
20 cd06407 PB1_NLP A PB1 domain i 99.5 7E-14 1.5E-18 123.7 9.8 79 292-381 1-81 (82)
21 KOG1126 DNA-binding cell divis 99.5 3.4E-14 7.3E-19 162.2 9.8 169 45-219 420-590 (638)
22 KOG0548 Molecular co-chaperone 99.5 1.8E-13 3.8E-18 153.4 14.0 118 44-167 356-473 (539)
23 PRK12370 invasion protein regu 99.5 8.8E-13 1.9E-17 153.3 20.4 154 59-218 317-473 (553)
24 COG3063 PilF Tfp pilus assembl 99.5 1.3E-12 2.9E-17 134.3 18.9 169 43-217 32-204 (250)
25 KOG0547 Translocase of outer m 99.5 2.9E-13 6.4E-18 150.0 14.4 173 41-219 321-495 (606)
26 cd06398 PB1_Joka2 The PB1 doma 99.5 1.8E-13 3.8E-18 123.3 10.4 81 293-383 2-89 (91)
27 PRK15359 type III secretion sy 99.5 1E-12 2.2E-17 127.1 15.7 113 49-167 27-139 (144)
28 PLN03088 SGT1, suppressor of 99.5 6.9E-13 1.5E-17 146.4 16.4 116 46-167 2-117 (356)
29 PRK12370 invasion protein regu 99.5 2E-12 4.4E-17 150.2 20.4 165 48-216 260-436 (553)
30 TIGR02521 type_IV_pilW type IV 99.5 6.7E-12 1.5E-16 123.4 20.6 162 46-213 65-230 (234)
31 TIGR03302 OM_YfiO outer membra 99.4 8.1E-12 1.7E-16 128.1 19.9 167 44-213 31-230 (235)
32 KOG4648 Uncharacterized conser 99.4 6.6E-13 1.4E-17 142.1 11.3 126 34-165 85-210 (536)
33 PRK15359 type III secretion sy 99.4 2.2E-12 4.9E-17 124.7 14.0 126 65-199 12-139 (144)
34 PRK09782 bacteriophage N4 rece 99.4 7.8E-12 1.7E-16 153.5 21.8 164 49-219 545-710 (987)
35 PRK15174 Vi polysaccharide exp 99.4 6.9E-12 1.5E-16 148.7 20.5 163 51-219 217-385 (656)
36 cd06396 PB1_NBR1 The PB1 domai 99.4 3.1E-12 6.7E-17 112.4 9.6 78 292-382 1-80 (81)
37 KOG1126 DNA-binding cell divis 99.4 3.3E-12 7.2E-17 146.1 12.5 168 46-219 455-624 (638)
38 PRK11189 lipoprotein NlpI; Pro 99.3 3.3E-11 7.1E-16 129.6 18.8 150 61-213 41-192 (296)
39 KOG1155 Anaphase-promoting com 99.3 1.4E-11 3.1E-16 136.2 16.1 157 52-214 336-494 (559)
40 TIGR02917 PEP_TPR_lipo putativ 99.3 4.4E-11 9.5E-16 140.6 21.1 169 44-218 123-293 (899)
41 TIGR02917 PEP_TPR_lipo putativ 99.3 7.9E-11 1.7E-15 138.4 20.7 166 46-219 703-870 (899)
42 KOG0548 Molecular co-chaperone 99.3 7.9E-12 1.7E-16 140.4 11.4 113 46-164 2-114 (539)
43 PRK11447 cellulose synthase su 99.3 1.2E-10 2.5E-15 146.4 22.3 171 46-218 303-527 (1157)
44 PRK15174 Vi polysaccharide exp 99.3 1.5E-10 3.3E-15 137.4 21.5 168 46-219 76-283 (656)
45 PRK09782 bacteriophage N4 rece 99.3 9.1E-11 2E-15 144.2 20.2 161 52-219 582-744 (987)
46 PRK11447 cellulose synthase su 99.3 1.5E-10 3.2E-15 145.4 22.5 167 47-219 462-704 (1157)
47 KOG0550 Molecular chaperone (D 99.3 1.2E-11 2.6E-16 135.4 10.8 122 43-167 246-367 (486)
48 TIGR02552 LcrH_SycD type III s 99.3 1.1E-10 2.4E-15 109.3 15.7 114 46-165 17-130 (135)
49 PRK11788 tetratricopeptide rep 99.3 2.3E-10 5E-15 125.1 20.1 167 49-218 144-314 (389)
50 PRK11788 tetratricopeptide rep 99.3 2.6E-10 5.5E-15 124.7 19.8 163 47-215 108-278 (389)
51 PRK15363 pathogenicity island 99.2 1.7E-10 3.6E-15 113.5 15.8 106 44-155 33-138 (157)
52 PRK10370 formate-dependent nit 99.2 3.2E-10 6.9E-15 115.7 17.2 115 59-179 52-169 (198)
53 KOG0624 dsRNA-activated protei 99.2 2.8E-10 6.2E-15 122.3 16.0 168 45-218 37-221 (504)
54 TIGR02552 LcrH_SycD type III s 99.2 5E-10 1.1E-14 104.8 15.0 118 67-190 4-123 (135)
55 PLN02789 farnesyltranstransfer 99.2 1.2E-09 2.5E-14 119.5 19.7 161 56-221 47-218 (320)
56 PF13429 TPR_15: Tetratricopep 99.2 2.2E-10 4.8E-15 121.2 12.4 164 46-213 110-275 (280)
57 KOG1155 Anaphase-promoting com 99.2 1.1E-09 2.4E-14 121.5 17.9 164 46-215 364-536 (559)
58 KOG0545 Aryl-hydrocarbon recep 99.1 2.7E-10 5.9E-15 118.1 12.1 121 32-154 164-298 (329)
59 PRK10370 formate-dependent nit 99.1 1.9E-09 4.1E-14 110.0 17.3 154 49-219 19-177 (198)
60 PLN02789 farnesyltranstransfer 99.1 1.6E-09 3.4E-14 118.5 17.7 139 45-187 70-218 (320)
61 COG3063 PilF Tfp pilus assembl 99.1 7.5E-10 1.6E-14 114.3 14.0 135 82-218 33-171 (250)
62 PRK15179 Vi polysaccharide bio 99.1 1.4E-09 3E-14 129.5 18.0 129 84-214 86-216 (694)
63 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.2E-09 4.7E-14 97.0 14.7 112 46-160 2-116 (119)
64 KOG1125 TPR repeat-containing 99.1 5.6E-10 1.2E-14 126.6 12.6 100 119-218 429-530 (579)
65 KOG2002 TPR-containing nuclear 99.1 1.4E-09 3E-14 128.9 15.9 172 45-221 163-342 (1018)
66 PRK10049 pgaA outer membrane p 99.1 4.4E-09 9.5E-14 127.1 20.3 157 50-213 19-177 (765)
67 PRK10049 pgaA outer membrane p 99.1 3.8E-09 8.2E-14 127.6 18.8 169 52-222 278-463 (765)
68 PRK15179 Vi polysaccharide bio 99.1 5.7E-09 1.2E-13 124.4 19.7 128 46-179 86-213 (694)
69 KOG0550 Molecular chaperone (D 99.0 5.3E-10 1.2E-14 122.7 8.5 172 42-219 45-236 (486)
70 KOG0376 Serine-threonine phosp 99.0 3.7E-10 8E-15 126.2 6.5 118 45-168 3-120 (476)
71 cd00189 TPR Tetratricopeptide 99.0 5.6E-09 1.2E-13 86.2 12.0 99 48-152 2-100 (100)
72 cd05804 StaR_like StaR_like; a 99.0 1.5E-08 3.3E-13 109.6 18.7 160 47-213 44-213 (355)
73 PRK02603 photosystem I assembl 99.0 1.2E-08 2.6E-13 100.9 16.3 107 44-153 33-153 (172)
74 cd06397 PB1_UP1 Uncharacterize 99.0 1.3E-09 2.9E-14 94.8 7.9 65 293-357 2-67 (82)
75 COG5010 TadD Flp pilus assembl 99.0 1.3E-08 2.9E-13 106.6 16.8 156 50-211 70-227 (257)
76 KOG2076 RNA polymerase III tra 99.0 2.9E-08 6.4E-13 117.2 21.2 164 45-214 138-308 (895)
77 KOG0553 TPR repeat-containing 99.0 5E-09 1.1E-13 111.6 13.5 117 85-203 82-200 (304)
78 PRK14574 hmsH outer membrane p 99.0 1.9E-08 4E-13 122.0 19.8 167 46-219 34-202 (822)
79 TIGR03302 OM_YfiO outer membra 99.0 2.2E-08 4.7E-13 102.8 17.4 132 47-179 71-228 (235)
80 PF13429 TPR_15: Tetratricopep 99.0 2.9E-09 6.3E-14 112.7 10.8 129 45-179 145-273 (280)
81 PF13414 TPR_11: TPR repeat; P 99.0 2.5E-09 5.5E-14 89.4 8.1 66 84-151 3-69 (69)
82 KOG4642 Chaperone-dependent E3 98.9 1.7E-09 3.7E-14 111.9 8.1 101 44-150 8-108 (284)
83 PLN03088 SGT1, suppressor of 98.9 1.3E-08 2.7E-13 112.8 15.2 111 87-199 5-117 (356)
84 CHL00033 ycf3 photosystem I as 98.9 2.9E-08 6.3E-13 97.6 16.2 108 44-154 33-154 (168)
85 cd06403 PB1_Par6 The PB1 domai 98.9 4.7E-09 1E-13 91.3 9.0 74 293-381 2-78 (80)
86 KOG2003 TPR repeat-containing 98.9 8.5E-09 1.8E-13 113.8 11.9 168 45-218 489-658 (840)
87 PF13414 TPR_11: TPR repeat; P 98.9 6.2E-09 1.3E-13 87.1 8.0 67 45-117 2-69 (69)
88 COG5010 TadD Flp pilus assembl 98.9 7.2E-08 1.6E-12 101.2 17.0 133 48-186 102-234 (257)
89 PRK10866 outer membrane biogen 98.9 2.4E-07 5.3E-12 97.6 20.6 163 46-211 32-237 (243)
90 PF12895 Apc3: Anaphase-promot 98.8 6.5E-09 1.4E-13 90.9 7.2 84 58-146 1-84 (84)
91 PF06552 TOM20_plant: Plant sp 98.8 2.5E-08 5.3E-13 100.0 11.5 98 500-628 6-109 (186)
92 KOG1840 Kinesin light chain [C 98.8 1.1E-07 2.3E-12 109.5 16.3 166 46-213 199-394 (508)
93 cd06406 PB1_P67 A PB1 domain i 98.8 2.9E-08 6.3E-13 87.2 8.6 74 293-382 4-79 (80)
94 KOG1173 Anaphase-promoting com 98.8 1.5E-07 3.2E-12 107.0 16.3 168 46-219 346-522 (611)
95 cd00189 TPR Tetratricopeptide 98.8 1.2E-07 2.7E-12 78.1 11.7 92 86-179 2-93 (100)
96 PRK15331 chaperone protein Sic 98.8 1.3E-07 2.9E-12 93.8 13.8 116 44-166 35-150 (165)
97 CHL00033 ycf3 photosystem I as 98.8 8E-08 1.7E-12 94.5 12.3 121 54-178 7-137 (168)
98 PRK10747 putative protoheme IX 98.7 5.1E-07 1.1E-11 101.2 20.2 166 49-219 121-361 (398)
99 KOG1125 TPR repeat-containing 98.7 3.6E-08 7.9E-13 112.2 10.9 121 49-175 433-563 (579)
100 PF13525 YfiO: Outer membrane 98.7 3.2E-07 6.9E-12 93.7 16.6 161 44-207 3-199 (203)
101 PRK10803 tol-pal system protei 98.7 6E-07 1.3E-11 95.9 19.2 113 47-162 143-259 (263)
102 PRK11906 transcriptional regul 98.7 4.3E-07 9.2E-12 102.4 18.5 161 48-212 257-433 (458)
103 cd05804 StaR_like StaR_like; a 98.7 5.4E-07 1.2E-11 97.5 18.8 168 46-217 6-179 (355)
104 KOG2002 TPR-containing nuclear 98.7 2.8E-07 6.1E-12 109.7 17.6 163 46-213 307-479 (1018)
105 COG4783 Putative Zn-dependent 98.7 4E-07 8.7E-12 102.4 17.9 146 47-213 307-452 (484)
106 TIGR00540 hemY_coli hemY prote 98.7 1.1E-06 2.4E-11 98.8 21.7 169 44-218 82-295 (409)
107 PRK10153 DNA-binding transcrip 98.7 4.8E-07 1E-11 105.0 18.5 141 45-190 338-491 (517)
108 PF13432 TPR_16: Tetratricopep 98.7 5.5E-08 1.2E-12 80.6 7.9 64 89-154 2-65 (65)
109 TIGR02795 tol_pal_ybgF tol-pal 98.7 3E-07 6.4E-12 83.0 13.3 103 84-188 2-112 (119)
110 PRK15363 pathogenicity island 98.7 3.3E-07 7.2E-12 90.5 14.5 94 84-179 35-128 (157)
111 PRK10747 putative protoheme IX 98.7 1.3E-06 2.8E-11 98.0 20.4 165 43-214 81-291 (398)
112 KOG1129 TPR repeat-containing 98.6 2.4E-07 5.3E-12 99.7 12.8 160 50-216 227-388 (478)
113 KOG0624 dsRNA-activated protei 98.6 1.1E-06 2.4E-11 95.3 16.6 176 34-219 64-256 (504)
114 PRK02603 photosystem I assembl 98.6 1.7E-06 3.6E-11 85.7 16.0 87 82-170 33-122 (172)
115 COG4785 NlpI Lipoprotein NlpI, 98.6 4.1E-07 8.8E-12 93.6 11.7 164 44-214 63-265 (297)
116 PF09976 TPR_21: Tetratricopep 98.6 3.7E-06 8E-11 81.1 17.2 133 43-179 8-143 (145)
117 PF13432 TPR_16: Tetratricopep 98.6 2.4E-07 5.2E-12 76.7 7.6 65 50-120 1-65 (65)
118 KOG1129 TPR repeat-containing 98.5 3E-07 6.6E-12 99.0 9.9 170 46-221 256-430 (478)
119 KOG4555 TPR repeat-containing 98.5 1.9E-06 4E-11 82.8 14.1 105 42-152 39-147 (175)
120 PRK14574 hmsH outer membrane p 98.5 2.2E-06 4.9E-11 104.3 18.6 154 51-211 73-228 (822)
121 COG2956 Predicted N-acetylgluc 98.5 2.8E-06 6.1E-11 91.7 16.6 170 43-218 104-281 (389)
122 PF13512 TPR_18: Tetratricopep 98.5 1.7E-06 3.7E-11 84.2 13.6 110 46-158 10-137 (142)
123 KOG1840 Kinesin light chain [C 98.5 2.2E-06 4.8E-11 98.8 17.0 167 45-213 240-436 (508)
124 KOG1173 Anaphase-promoting com 98.5 1.6E-06 3.5E-11 98.8 15.3 140 50-195 384-532 (611)
125 KOG2003 TPR repeat-containing 98.5 2.1E-06 4.7E-11 95.3 15.6 168 46-219 524-693 (840)
126 COG1729 Uncharacterized protei 98.5 3.5E-06 7.5E-11 89.5 16.7 114 46-162 141-257 (262)
127 PF13371 TPR_9: Tetratricopept 98.5 5.8E-07 1.3E-11 75.8 8.7 70 91-162 2-71 (73)
128 TIGR00540 hemY_coli hemY prote 98.5 3.7E-06 8E-11 94.6 16.5 128 83-213 262-397 (409)
129 PF12569 NARP1: NMDA receptor- 98.5 6.1E-06 1.3E-10 95.8 18.5 126 85-212 195-331 (517)
130 cd06409 PB1_MUG70 The MUG70 pr 98.4 8.3E-07 1.8E-11 79.4 8.7 72 299-381 9-84 (86)
131 KOG1174 Anaphase-promoting com 98.4 2.9E-06 6.4E-11 93.8 14.0 167 46-218 300-470 (564)
132 KOG3060 Uncharacterized conser 98.4 7E-06 1.5E-10 86.3 15.9 140 49-194 89-233 (289)
133 COG2956 Predicted N-acetylgluc 98.4 8.6E-06 1.9E-10 88.0 16.8 163 48-213 143-309 (389)
134 PF14559 TPR_19: Tetratricopep 98.4 8E-07 1.7E-11 73.9 7.1 62 101-162 6-67 (68)
135 KOG1174 Anaphase-promoting com 98.4 3.8E-06 8.3E-11 92.9 14.0 170 44-219 332-504 (564)
136 PF12895 Apc3: Anaphase-promot 98.4 6.4E-07 1.4E-11 78.3 6.6 79 100-179 3-83 (84)
137 COG4235 Cytochrome c biogenesi 98.4 8.6E-06 1.9E-10 87.5 16.3 110 64-179 140-252 (287)
138 PF14559 TPR_19: Tetratricopep 98.4 1E-06 2.2E-11 73.3 7.3 68 56-129 1-68 (68)
139 PF09976 TPR_21: Tetratricopep 98.4 1E-05 2.2E-10 78.1 15.2 112 101-212 26-144 (145)
140 COG4783 Putative Zn-dependent 98.4 1.3E-05 2.8E-10 90.5 17.9 128 84-213 306-435 (484)
141 COG4235 Cytochrome c biogenesi 98.4 6.6E-06 1.4E-10 88.3 14.8 115 45-163 155-270 (287)
142 KOG1308 Hsp70-interacting prot 98.3 4.5E-07 9.7E-12 98.3 5.5 108 39-152 107-214 (377)
143 PF13371 TPR_9: Tetratricopept 98.3 2.8E-06 6E-11 71.6 9.2 70 53-128 2-71 (73)
144 PRK14720 transcript cleavage f 98.3 8.6E-06 1.9E-10 99.1 16.9 167 44-219 29-256 (906)
145 cd06410 PB1_UP2 Uncharacterize 98.3 3.5E-06 7.6E-11 77.1 9.8 78 294-380 15-96 (97)
146 KOG4162 Predicted calmodulin-b 98.3 1.4E-05 3E-10 94.0 16.6 128 46-179 650-779 (799)
147 KOG2076 RNA polymerase III tra 98.3 1.2E-05 2.6E-10 95.7 15.7 132 85-218 140-273 (895)
148 KOG1156 N-terminal acetyltrans 98.3 7.3E-06 1.6E-10 94.7 13.3 162 48-215 9-172 (700)
149 KOG0495 HAT repeat protein [RN 98.3 1.9E-05 4.1E-10 91.3 16.4 156 56-218 628-785 (913)
150 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.4E-05 3.1E-10 90.2 15.1 69 44-115 73-141 (453)
151 PF13424 TPR_12: Tetratricopep 98.2 1.6E-06 3.5E-11 74.3 5.3 67 81-149 2-75 (78)
152 PF12688 TPR_5: Tetratrico pep 98.2 2.4E-05 5.2E-10 74.3 13.1 99 47-148 2-103 (120)
153 KOG3060 Uncharacterized conser 98.2 8.1E-05 1.8E-09 78.5 17.3 163 50-218 56-223 (289)
154 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 7.3E-06 1.6E-10 92.5 9.9 66 83-150 74-142 (453)
155 KOG0543 FKBP-type peptidyl-pro 98.1 1.5E-05 3.4E-10 88.4 12.1 126 84-211 208-351 (397)
156 KOG1128 Uncharacterized conser 98.1 7.8E-06 1.7E-10 95.5 9.9 115 58-178 497-611 (777)
157 PRK10153 DNA-binding transcrip 98.1 3.9E-05 8.4E-10 89.4 15.7 136 83-219 338-486 (517)
158 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00029 6.3E-09 65.5 18.7 162 46-213 95-263 (291)
159 PRK11906 transcriptional regul 98.1 2.7E-05 5.9E-10 88.1 13.8 133 86-218 257-404 (458)
160 KOG4162 Predicted calmodulin-b 98.1 2.7E-05 5.8E-10 91.6 14.1 136 84-221 650-789 (799)
161 KOG1128 Uncharacterized conser 98.1 1.7E-05 3.7E-10 92.8 12.5 173 34-213 412-614 (777)
162 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00034 7.5E-09 65.0 18.9 167 46-218 59-234 (291)
163 PF14938 SNAP: Soluble NSF att 98.1 2.8E-05 6E-10 83.4 13.1 176 40-218 29-228 (282)
164 PF12688 TPR_5: Tetratrico pep 98.1 4E-05 8.7E-10 72.8 12.6 93 85-179 2-100 (120)
165 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5E-05 1.1E-09 85.6 15.5 112 59-179 182-293 (395)
166 cd06395 PB1_Map2k5 PB1 domain 98.1 5.2E-06 1.1E-10 72.5 5.5 65 292-356 3-68 (91)
167 PF13424 TPR_12: Tetratricopep 98.1 1E-05 2.2E-10 69.3 7.3 70 44-115 3-75 (78)
168 PF12569 NARP1: NMDA receptor- 98.1 0.00019 4.2E-09 83.5 20.0 80 45-130 3-82 (517)
169 PRK10803 tol-pal system protei 98.1 7.8E-05 1.7E-09 79.8 15.1 104 84-189 142-254 (263)
170 KOG1127 TPR repeat-containing 98.1 3.7E-05 8.1E-10 92.2 13.5 148 58-211 470-655 (1238)
171 KOG2376 Signal recognition par 98.0 8E-05 1.7E-09 85.7 15.4 156 47-212 13-201 (652)
172 KOG1310 WD40 repeat protein [G 98.0 1.6E-05 3.5E-10 90.1 9.6 114 39-156 367-481 (758)
173 KOG0495 HAT repeat protein [RN 98.0 9.4E-05 2E-09 85.8 15.8 164 49-218 654-849 (913)
174 PRK10866 outer membrane biogen 98.0 0.0003 6.5E-09 74.3 18.6 132 46-178 69-236 (243)
175 COG4105 ComL DNA uptake lipopr 98.0 0.00058 1.3E-08 72.4 19.6 163 46-211 34-229 (254)
176 PF06552 TOM20_plant: Plant sp 98.0 5.4E-05 1.2E-09 76.3 10.9 99 62-164 7-124 (186)
177 KOG3785 Uncharacterized conser 98.0 0.00015 3.2E-09 79.4 14.8 156 55-219 31-218 (557)
178 PRK14720 transcript cleavage f 97.9 5.5E-05 1.2E-09 92.3 12.7 127 83-214 30-177 (906)
179 PF13525 YfiO: Outer membrane 97.9 0.00033 7.2E-09 71.7 16.5 128 46-174 42-198 (203)
180 KOG0546 HSP90 co-chaperone CPR 97.9 2E-05 4.4E-10 86.1 7.5 133 36-170 212-359 (372)
181 cd06399 PB1_P40 The PB1 domain 97.9 4.9E-05 1.1E-09 67.5 7.9 58 299-357 12-73 (92)
182 KOG4648 Uncharacterized conser 97.9 3.4E-05 7.3E-10 83.9 8.1 104 88-193 101-206 (536)
183 COG3071 HemY Uncharacterized e 97.9 0.0012 2.7E-08 73.3 20.0 130 43-178 81-211 (400)
184 PRK15331 chaperone protein Sic 97.9 0.00017 3.7E-09 71.9 12.1 101 84-186 37-138 (165)
185 KOG1127 TPR repeat-containing 97.8 3.5E-05 7.6E-10 92.5 8.1 133 45-179 491-655 (1238)
186 KOG1156 N-terminal acetyltrans 97.8 0.00036 7.8E-09 81.2 14.7 161 45-211 40-210 (700)
187 PF04733 Coatomer_E: Coatomer 97.8 0.00013 2.9E-09 79.1 10.7 152 49-211 105-261 (290)
188 COG4785 NlpI Lipoprotein NlpI, 97.8 0.00016 3.5E-09 74.9 10.6 104 82-187 63-168 (297)
189 KOG0695 Serine/threonine prote 97.8 7.7E-05 1.7E-09 81.1 8.4 91 291-393 15-107 (593)
190 COG4700 Uncharacterized protei 97.7 0.001 2.2E-08 67.8 15.5 146 54-206 64-213 (251)
191 PF04733 Coatomer_E: Coatomer 97.7 0.00041 9E-09 75.2 13.6 137 50-190 135-274 (290)
192 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0012 2.5E-08 74.7 16.6 114 93-211 178-293 (395)
193 KOG4642 Chaperone-dependent E3 97.7 0.00012 2.7E-09 76.5 8.0 88 90-179 16-103 (284)
194 PLN03218 maturation of RBCL 1; 97.6 0.0036 7.7E-08 78.8 21.4 160 47-215 508-678 (1060)
195 KOG4234 TPR repeat-containing 97.6 0.00049 1.1E-08 70.6 11.0 95 91-187 102-203 (271)
196 PRK04841 transcriptional regul 97.6 0.0022 4.9E-08 78.6 19.0 166 46-213 452-639 (903)
197 COG4700 Uncharacterized protei 97.6 0.002 4.2E-08 65.8 14.9 128 45-178 88-217 (251)
198 PF14938 SNAP: Soluble NSF att 97.6 0.00087 1.9E-08 71.9 13.1 138 44-184 73-228 (282)
199 PLN03218 maturation of RBCL 1; 97.5 0.0067 1.5E-07 76.4 22.0 156 48-211 544-709 (1060)
200 PLN03081 pentatricopeptide (PP 97.5 0.0026 5.6E-08 76.5 17.4 160 49-218 363-526 (697)
201 KOG1130 Predicted G-alpha GTPa 97.5 0.00011 2.4E-09 81.6 5.1 120 46-167 17-148 (639)
202 PLN03081 pentatricopeptide (PP 97.5 0.0032 7E-08 75.6 17.7 152 51-212 264-417 (697)
203 PLN03077 Protein ECB2; Provisi 97.4 0.0034 7.3E-08 77.2 17.7 155 48-212 556-717 (857)
204 KOG1130 Predicted G-alpha GTPa 97.4 0.0003 6.6E-09 78.2 6.7 168 44-213 133-342 (639)
205 PF13428 TPR_14: Tetratricopep 97.4 0.00035 7.5E-09 54.2 5.2 42 121-162 2-43 (44)
206 KOG0376 Serine-threonine phosp 97.4 0.00023 5.1E-09 80.6 6.0 109 87-197 7-117 (476)
207 cd06411 PB1_p51 The PB1 domain 97.4 0.0011 2.5E-08 58.3 8.9 73 295-382 2-77 (78)
208 KOG3785 Uncharacterized conser 97.4 0.0018 3.8E-08 71.2 12.3 143 52-200 63-233 (557)
209 PF03704 BTAD: Bacterial trans 97.3 0.0045 9.8E-08 59.3 13.8 99 46-146 6-122 (146)
210 PF00515 TPR_1: Tetratricopept 97.3 0.00033 7.1E-09 50.9 4.4 32 121-152 2-33 (34)
211 KOG4340 Uncharacterized conser 97.3 0.00094 2E-08 72.0 9.4 149 55-213 19-171 (459)
212 COG1729 Uncharacterized protei 97.3 0.0046 9.9E-08 66.1 14.0 103 87-191 144-254 (262)
213 cd06405 PB1_Mekk2_3 The PB1 do 97.2 0.0022 4.7E-08 55.8 8.9 77 292-381 1-77 (79)
214 PF00515 TPR_1: Tetratricopept 97.2 0.00049 1.1E-08 49.9 4.3 34 84-119 1-34 (34)
215 PRK04841 transcriptional regul 97.2 0.012 2.6E-07 72.4 18.7 162 50-213 535-718 (903)
216 KOG2610 Uncharacterized conser 97.2 0.01 2.3E-07 65.1 15.8 157 49-211 106-272 (491)
217 PF07719 TPR_2: Tetratricopept 97.2 0.00079 1.7E-08 48.4 5.1 33 121-153 2-34 (34)
218 KOG4555 TPR repeat-containing 97.2 0.0043 9.2E-08 60.2 11.0 88 90-179 49-140 (175)
219 KOG2376 Signal recognition par 97.1 0.003 6.5E-08 73.2 11.4 119 92-212 18-136 (652)
220 PF12968 DUF3856: Domain of Un 97.1 0.0065 1.4E-07 57.9 11.6 103 45-149 8-129 (144)
221 PF13431 TPR_17: Tetratricopep 97.0 0.0007 1.5E-08 50.2 3.6 32 109-140 2-33 (34)
222 PF13428 TPR_14: Tetratricopep 97.0 0.0012 2.7E-08 51.1 5.2 43 85-129 2-44 (44)
223 PF13512 TPR_18: Tetratricopep 97.0 0.014 3E-07 57.2 13.2 84 84-169 10-99 (142)
224 KOG4340 Uncharacterized conser 97.0 0.0041 8.8E-08 67.2 10.0 156 48-209 46-264 (459)
225 PLN03077 Protein ECB2; Provisi 97.0 0.023 4.9E-07 70.0 18.1 153 54-219 532-690 (857)
226 PF07719 TPR_2: Tetratricopept 96.9 0.002 4.4E-08 46.2 5.0 33 85-119 2-34 (34)
227 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0047 1E-07 67.6 9.4 119 58-179 54-178 (390)
228 COG3071 HemY Uncharacterized e 96.8 0.086 1.9E-06 59.1 19.1 167 48-219 120-361 (400)
229 COG3118 Thioredoxin domain-con 96.8 0.057 1.2E-06 58.6 16.7 148 48-206 136-292 (304)
230 PRK10941 hypothetical protein; 96.7 0.014 3E-07 62.9 11.7 81 83-165 180-260 (269)
231 KOG1308 Hsp70-interacting prot 96.7 0.0011 2.4E-08 72.6 3.1 81 99-179 127-207 (377)
232 KOG2796 Uncharacterized conser 96.6 0.024 5.2E-07 60.6 11.9 123 52-179 183-311 (366)
233 PF04184 ST7: ST7 protein; In 96.5 0.061 1.3E-06 61.9 15.4 134 54-195 176-339 (539)
234 PF13431 TPR_17: Tetratricopep 96.5 0.003 6.6E-08 46.8 3.3 33 68-106 1-33 (34)
235 PF13181 TPR_8: Tetratricopept 96.4 0.0047 1E-07 44.5 4.2 33 121-153 2-34 (34)
236 KOG1915 Cell cycle control pro 96.2 0.17 3.7E-06 58.0 16.8 156 52-214 79-235 (677)
237 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.018 3.9E-07 47.3 6.9 46 121-166 2-47 (53)
238 KOG2796 Uncharacterized conser 96.2 0.18 4E-06 54.2 15.9 132 86-219 179-319 (366)
239 KOG1915 Cell cycle control pro 96.2 0.082 1.8E-06 60.4 14.0 163 58-223 378-544 (677)
240 PF03704 BTAD: Bacterial trans 96.1 0.11 2.4E-06 49.7 13.1 87 91-179 13-121 (146)
241 KOG0545 Aryl-hydrocarbon recep 96.0 0.041 8.9E-07 58.4 10.0 101 84-186 178-298 (329)
242 COG4105 ComL DNA uptake lipopr 95.8 0.38 8.3E-06 51.4 16.5 132 47-179 72-229 (254)
243 PF13181 TPR_8: Tetratricopept 95.8 0.014 3.1E-07 42.0 4.2 32 85-118 2-33 (34)
244 PF15015 NYD-SP12_N: Spermatog 95.8 0.05 1.1E-06 61.4 9.8 101 44-146 174-288 (569)
245 KOG2053 Mitochondrial inherita 95.7 0.18 3.8E-06 61.4 14.7 108 55-170 18-126 (932)
246 KOG4507 Uncharacterized conser 95.5 0.052 1.1E-06 63.2 9.2 105 56-165 617-721 (886)
247 KOG4814 Uncharacterized conser 95.4 0.081 1.8E-06 62.2 10.4 101 48-150 356-458 (872)
248 PF10300 DUF3808: Protein of u 95.4 0.067 1.4E-06 62.0 9.9 104 61-170 248-356 (468)
249 PF13174 TPR_6: Tetratricopept 95.4 0.027 5.8E-07 39.9 4.1 32 122-153 2-33 (33)
250 KOG1941 Acetylcholine receptor 95.4 0.089 1.9E-06 58.5 9.9 131 47-179 123-271 (518)
251 KOG1941 Acetylcholine receptor 95.3 0.083 1.8E-06 58.8 9.5 166 45-213 5-189 (518)
252 KOG3081 Vesicle coat complex C 95.2 0.35 7.6E-06 52.1 13.6 129 49-177 111-264 (299)
253 PF14853 Fis1_TPR_C: Fis1 C-te 95.1 0.075 1.6E-06 43.7 6.5 44 85-130 2-45 (53)
254 KOG1585 Protein required for f 95.1 0.73 1.6E-05 49.3 15.3 165 45-212 30-216 (308)
255 KOG1586 Protein required for f 95.1 0.5 1.1E-05 50.2 14.0 174 42-218 30-227 (288)
256 PF10300 DUF3808: Protein of u 94.9 0.28 6.1E-06 56.9 13.0 115 99-213 246-374 (468)
257 COG3118 Thioredoxin domain-con 94.9 0.21 4.5E-06 54.4 11.0 117 90-212 140-262 (304)
258 smart00028 TPR Tetratricopepti 94.9 0.04 8.7E-07 36.6 3.7 30 122-151 3-32 (34)
259 KOG1070 rRNA processing protei 94.9 0.98 2.1E-05 57.6 17.8 129 85-215 1531-1663(1710)
260 COG3898 Uncharacterized membra 94.8 0.73 1.6E-05 52.0 15.1 158 55-218 197-361 (531)
261 KOG3081 Vesicle coat complex C 94.8 0.79 1.7E-05 49.5 14.7 164 47-221 73-242 (299)
262 KOG1586 Protein required for f 94.8 0.44 9.6E-06 50.6 12.6 135 52-188 79-231 (288)
263 PF05843 Suf: Suppressor of fo 94.7 0.41 8.9E-06 51.7 12.9 125 50-179 5-132 (280)
264 PF13281 DUF4071: Domain of un 94.7 0.98 2.1E-05 51.1 16.1 162 56-219 151-338 (374)
265 smart00028 TPR Tetratricopepti 94.7 0.047 1E-06 36.2 3.7 32 85-118 2-33 (34)
266 KOG2471 TPR repeat-containing 94.6 0.1 2.2E-06 59.8 8.1 119 46-166 240-381 (696)
267 COG2976 Uncharacterized protei 94.6 0.46 1E-05 49.1 12.0 102 48-153 91-192 (207)
268 KOG3364 Membrane protein invol 94.5 0.38 8.2E-06 47.1 10.6 84 84-167 32-118 (149)
269 PF12968 DUF3856: Domain of Un 94.4 0.25 5.5E-06 47.4 9.1 110 83-213 6-127 (144)
270 COG3898 Uncharacterized membra 94.4 2.5 5.5E-05 47.9 18.0 161 47-213 121-290 (531)
271 KOG3824 Huntingtin interacting 94.4 0.12 2.6E-06 56.5 7.7 73 89-163 121-193 (472)
272 KOG3824 Huntingtin interacting 94.1 0.18 4E-06 55.1 8.4 88 36-130 107-194 (472)
273 PF10579 Rapsyn_N: Rapsyn N-te 94.0 0.26 5.7E-06 43.8 7.8 69 44-115 4-72 (80)
274 COG2976 Uncharacterized protei 94.0 1 2.2E-05 46.6 13.0 108 109-216 75-189 (207)
275 PF13174 TPR_6: Tetratricopept 93.9 0.094 2E-06 37.1 4.1 32 86-119 2-33 (33)
276 COG4976 Predicted methyltransf 93.9 0.086 1.9E-06 55.6 5.2 61 96-156 5-65 (287)
277 KOG3606 Cell polarity protein 93.8 0.068 1.5E-06 57.0 4.4 78 291-383 18-98 (358)
278 PF14561 TPR_20: Tetratricopep 93.8 0.45 9.7E-06 43.1 9.1 66 105-170 7-74 (90)
279 PF09986 DUF2225: Uncharacteri 93.7 0.84 1.8E-05 47.7 12.3 98 55-154 86-199 (214)
280 PF04781 DUF627: Protein of un 93.5 0.5 1.1E-05 44.6 9.0 97 52-149 2-107 (111)
281 PF13176 TPR_7: Tetratricopept 93.4 0.13 2.8E-06 38.3 4.2 27 122-148 1-27 (36)
282 PF04910 Tcf25: Transcriptiona 93.4 1.8 3.8E-05 48.8 15.0 118 83-202 39-194 (360)
283 KOG2396 HAT (Half-A-TPR) repea 93.4 0.75 1.6E-05 53.3 11.9 94 64-163 89-183 (568)
284 KOG2053 Mitochondrial inherita 93.4 0.44 9.5E-06 58.1 10.6 105 101-206 24-130 (932)
285 PF05843 Suf: Suppressor of fo 93.3 0.98 2.1E-05 48.8 12.3 131 86-218 3-139 (280)
286 PF04184 ST7: ST7 protein; In 93.2 0.44 9.5E-06 55.2 9.8 111 101-213 183-322 (539)
287 PF02259 FAT: FAT domain; Int 93.1 2.2 4.8E-05 46.1 14.9 122 44-167 144-305 (352)
288 KOG1550 Extracellular protein 93.1 0.78 1.7E-05 54.3 12.2 162 47-216 213-394 (552)
289 PF09613 HrpB1_HrpK: Bacterial 93.1 3.7 8.1E-05 41.3 15.0 86 84-171 10-95 (160)
290 PF09613 HrpB1_HrpK: Bacterial 92.9 5.9 0.00013 39.9 16.0 113 45-166 9-122 (160)
291 PF14561 TPR_20: Tetratricopep 92.6 1.1 2.3E-05 40.6 9.7 77 64-146 6-84 (90)
292 PRK10941 hypothetical protein; 92.3 1.3 2.9E-05 47.9 11.7 78 47-130 182-259 (269)
293 KOG2047 mRNA splicing factor [ 92.1 6.3 0.00014 47.3 17.3 171 47-219 388-583 (835)
294 KOG2471 TPR repeat-containing 92.1 0.96 2.1E-05 52.3 10.5 145 46-198 208-381 (696)
295 COG2912 Uncharacterized conser 92.0 0.83 1.8E-05 49.4 9.5 80 83-164 180-259 (269)
296 KOG2610 Uncharacterized conser 91.6 6.8 0.00015 43.9 15.9 115 99-213 116-236 (491)
297 PF13176 TPR_7: Tetratricopept 91.6 0.3 6.5E-06 36.3 4.1 24 87-112 2-25 (36)
298 COG0790 FOG: TPR repeat, SEL1 91.2 7.8 0.00017 41.3 16.0 133 59-200 90-236 (292)
299 KOG1070 rRNA processing protei 91.0 6.8 0.00015 50.5 16.9 151 52-208 1536-1693(1710)
300 KOG3617 WD40 and TPR repeat-co 90.4 1.5 3.3E-05 53.3 10.3 117 84-213 858-994 (1416)
301 KOG0530 Protein farnesyltransf 90.3 4.1 8.8E-05 44.2 12.4 118 56-178 53-171 (318)
302 PRK15180 Vi polysaccharide bio 90.0 1.9 4.2E-05 49.8 10.3 125 49-179 292-416 (831)
303 COG3914 Spy Predicted O-linked 89.2 4.4 9.6E-05 48.0 12.7 107 52-163 73-185 (620)
304 PF08631 SPO22: Meiosis protei 89.2 14 0.00031 39.7 16.1 113 37-151 26-152 (278)
305 COG4976 Predicted methyltransf 88.9 0.59 1.3E-05 49.5 5.0 61 54-120 3-63 (287)
306 PF10602 RPN7: 26S proteasome 88.8 5 0.00011 40.7 11.5 101 44-147 34-140 (177)
307 KOG1550 Extracellular protein 88.8 7.4 0.00016 46.3 14.6 116 50-175 292-418 (552)
308 PF02259 FAT: FAT domain; Int 88.4 4.3 9.2E-05 43.9 11.5 107 46-152 184-341 (352)
309 KOG3617 WD40 and TPR repeat-co 88.1 9.3 0.0002 47.0 14.4 99 48-148 860-995 (1416)
310 COG0790 FOG: TPR repeat, SEL1 87.9 22 0.00048 37.8 16.4 113 48-168 111-236 (292)
311 PF13374 TPR_10: Tetratricopep 87.6 1.1 2.5E-05 32.9 4.6 30 84-115 2-31 (42)
312 KOG3364 Membrane protein invol 87.5 1.7 3.7E-05 42.7 6.7 79 48-131 34-116 (149)
313 COG2909 MalT ATP-dependent tra 87.4 18 0.00039 44.9 16.7 166 44-211 456-643 (894)
314 PRK13184 pknD serine/threonine 87.0 3.5 7.5E-05 51.9 10.8 114 53-168 482-600 (932)
315 PF12862 Apc5: Anaphase-promot 86.8 2.7 5.9E-05 37.8 7.4 59 55-115 7-70 (94)
316 COG3914 Spy Predicted O-linked 86.7 11 0.00024 44.8 13.9 128 57-188 41-178 (620)
317 KOG4814 Uncharacterized conser 86.3 4.8 0.0001 48.1 10.7 94 84-179 354-453 (872)
318 KOG1310 WD40 repeat protein [G 86.3 1.7 3.6E-05 50.8 6.9 79 101-179 389-470 (758)
319 KOG1585 Protein required for f 86.1 18 0.00039 39.1 13.9 125 85-211 32-175 (308)
320 COG5191 Uncharacterized conser 86.0 1.4 3E-05 48.6 5.8 78 84-163 107-185 (435)
321 PF13281 DUF4071: Domain of un 85.6 26 0.00056 39.9 15.8 130 46-179 179-330 (374)
322 PF09986 DUF2225: Uncharacteri 85.5 3.7 8.1E-05 42.9 8.7 87 41-129 120-209 (214)
323 KOG2300 Uncharacterized conser 85.0 17 0.00038 42.5 14.0 151 44-201 365-540 (629)
324 PF13374 TPR_10: Tetratricopep 84.9 1.9 4.2E-05 31.7 4.6 31 120-150 2-32 (42)
325 KOG2300 Uncharacterized conser 84.7 15 0.00033 42.9 13.5 154 57-213 286-472 (629)
326 KOG0529 Protein geranylgeranyl 84.5 8.4 0.00018 44.0 11.2 106 58-167 87-196 (421)
327 KOG1839 Uncharacterized protei 83.6 4.3 9.3E-05 51.8 9.3 165 44-211 930-1124(1236)
328 PF12862 Apc5: Anaphase-promot 83.3 4.6 9.9E-05 36.4 7.2 57 94-152 8-73 (94)
329 TIGR02561 HrpB1_HrpK type III 83.0 50 0.0011 33.1 14.6 83 87-171 13-95 (153)
330 KOG0530 Protein farnesyltransf 81.9 24 0.00051 38.6 12.7 110 102-211 59-172 (318)
331 PF08424 NRDE-2: NRDE-2, neces 81.9 18 0.00038 40.0 12.5 143 67-213 6-181 (321)
332 PF14560 Ubiquitin_2: Ubiquiti 80.9 4.3 9.3E-05 36.1 6.0 65 306-385 19-85 (87)
333 cd01789 Alp11_N Ubiquitin-like 80.0 6.1 0.00013 35.2 6.6 76 295-385 5-83 (84)
334 TIGR02561 HrpB1_HrpK type III 79.6 23 0.0005 35.4 11.0 85 47-137 11-95 (153)
335 PF10516 SHNi-TPR: SHNi-TPR; 79.1 2.8 6E-05 32.3 3.5 30 121-150 2-31 (38)
336 PF08631 SPO22: Meiosis protei 79.0 48 0.001 35.7 14.4 122 57-179 4-146 (278)
337 PF15015 NYD-SP12_N: Spermatog 78.7 8.2 0.00018 44.3 8.5 82 94-177 186-285 (569)
338 COG3629 DnrI DNA-binding trans 78.0 26 0.00056 38.4 11.9 61 119-179 152-212 (280)
339 PRK15180 Vi polysaccharide bio 77.7 7.4 0.00016 45.2 7.9 121 99-219 302-424 (831)
340 COG2912 Uncharacterized conser 77.4 13 0.00029 40.3 9.4 73 52-130 187-259 (269)
341 PF07079 DUF1347: Protein of u 77.3 1.6E+02 0.0034 34.7 18.0 129 43-180 376-521 (549)
342 COG3629 DnrI DNA-binding trans 77.2 23 0.0005 38.8 11.3 65 83-149 152-216 (280)
343 PF10373 EST1_DNA_bind: Est1 D 77.2 8 0.00017 40.6 7.7 62 65-132 1-62 (278)
344 KOG2422 Uncharacterized conser 76.5 42 0.00092 40.1 13.6 126 50-177 239-401 (665)
345 KOG4507 Uncharacterized conser 76.5 4.9 0.00011 47.6 6.1 98 57-158 224-321 (886)
346 PF10373 EST1_DNA_bind: Est1 D 76.3 8.4 0.00018 40.4 7.6 62 105-166 1-62 (278)
347 KOG2047 mRNA splicing factor [ 75.9 89 0.0019 38.1 16.0 156 57-215 358-540 (835)
348 KOG0529 Protein geranylgeranyl 74.8 1E+02 0.0022 35.7 15.6 145 48-196 30-193 (421)
349 PF11207 DUF2989: Protein of u 74.6 19 0.00042 37.6 9.3 70 103-174 123-198 (203)
350 PF07079 DUF1347: Protein of u 74.2 16 0.00035 42.4 9.3 43 101-144 477-519 (549)
351 PF04781 DUF627: Protein of un 72.4 29 0.00063 33.0 9.2 84 90-175 2-99 (111)
352 PF09670 Cas_Cas02710: CRISPR- 72.2 60 0.0013 36.9 13.5 69 45-115 130-198 (379)
353 PF07720 TPR_3: Tetratricopept 72.1 10 0.00023 28.7 5.0 33 121-153 2-36 (36)
354 COG3947 Response regulator con 71.6 10 0.00022 41.8 6.8 59 120-178 279-337 (361)
355 COG4941 Predicted RNA polymera 71.4 24 0.00051 39.7 9.5 97 59-163 309-408 (415)
356 PF10345 Cohesin_load: Cohesin 71.2 1.7E+02 0.0038 35.2 17.8 165 44-211 57-250 (608)
357 PF04910 Tcf25: Transcriptiona 70.3 54 0.0012 37.1 12.5 114 35-152 92-225 (360)
358 PF08424 NRDE-2: NRDE-2, neces 70.2 87 0.0019 34.6 13.9 113 61-179 46-179 (321)
359 PF10602 RPN7: 26S proteasome 69.8 30 0.00065 35.1 9.4 65 83-149 35-102 (177)
360 KOG2041 WD40 repeat protein [G 68.6 61 0.0013 39.7 12.6 84 44-145 794-877 (1189)
361 PF10516 SHNi-TPR: SHNi-TPR; 67.5 7.7 0.00017 29.9 3.5 30 85-116 2-31 (38)
362 KOG1839 Uncharacterized protei 67.4 26 0.00056 45.2 9.9 131 45-177 972-1122(1236)
363 KOG4459 Membrane-associated pr 67.2 18 0.00039 41.8 7.8 156 46-207 31-216 (471)
364 COG4649 Uncharacterized protei 66.6 1.2E+02 0.0025 31.7 12.5 129 47-179 59-192 (221)
365 COG3947 Response regulator con 65.8 18 0.0004 39.9 7.2 59 86-146 281-339 (361)
366 PF07721 TPR_4: Tetratricopept 65.1 7.6 0.00016 26.8 2.8 23 122-144 3-25 (26)
367 KOG2114 Vacuolar assembly/sort 64.8 87 0.0019 39.1 13.1 33 44-76 366-398 (933)
368 KOG2396 HAT (Half-A-TPR) repea 64.7 47 0.001 39.2 10.5 87 104-190 89-178 (568)
369 PF14863 Alkyl_sulf_dimr: Alky 64.3 19 0.0004 35.6 6.4 53 118-170 68-120 (141)
370 PF04212 MIT: MIT (microtubule 64.0 17 0.00037 30.8 5.4 33 43-75 2-34 (69)
371 KOG3807 Predicted membrane pro 63.6 2.3E+02 0.0049 32.2 15.0 130 51-188 189-348 (556)
372 KOG2422 Uncharacterized conser 61.2 1.1E+02 0.0023 36.9 12.6 114 35-152 331-451 (665)
373 cd02678 MIT_VPS4 MIT: domain c 60.7 19 0.00041 31.3 5.2 34 42-75 2-35 (75)
374 PF02017 CIDE-N: CIDE-N domain 60.5 17 0.00036 32.5 4.7 48 292-342 3-52 (78)
375 COG2909 MalT ATP-dependent tra 59.6 3.3E+02 0.0071 34.5 16.8 129 39-169 408-552 (894)
376 KOG3616 Selective LIM binding 59.3 1.2E+02 0.0027 37.4 12.8 150 50-209 665-847 (1636)
377 PF14863 Alkyl_sulf_dimr: Alky 59.1 49 0.0011 32.6 8.3 46 49-98 73-118 (141)
378 PF11817 Foie-gras_1: Foie gra 58.5 40 0.00088 35.7 8.3 63 83-147 177-245 (247)
379 PF11817 Foie-gras_1: Foie gra 57.5 52 0.0011 34.9 8.9 56 120-175 178-239 (247)
380 PF10579 Rapsyn_N: Rapsyn N-te 57.3 63 0.0014 29.1 7.8 60 87-148 9-71 (80)
381 PF07720 TPR_3: Tetratricopept 57.2 31 0.00068 26.1 5.1 31 48-78 3-35 (36)
382 PF10255 Paf67: RNA polymerase 56.2 37 0.00081 39.1 7.9 99 51-152 127-231 (404)
383 KOG1258 mRNA processing protei 54.8 4.6E+02 0.01 31.7 17.9 166 48-219 299-474 (577)
384 COG4649 Uncharacterized protei 54.4 2.8E+02 0.006 29.0 15.7 113 101-214 73-195 (221)
385 PF06957 COPI_C: Coatomer (COP 53.5 95 0.0021 36.1 10.6 113 44-156 202-336 (422)
386 TIGR03504 FimV_Cterm FimV C-te 53.0 48 0.001 26.4 5.7 24 124-147 3-26 (44)
387 smart00745 MIT Microtubule Int 52.9 32 0.00069 29.6 5.3 34 42-75 4-37 (77)
388 cd02682 MIT_AAA_Arch MIT: doma 52.6 32 0.00069 30.5 5.2 33 43-75 3-35 (75)
389 cd02681 MIT_calpain7_1 MIT: do 52.2 32 0.00069 30.5 5.2 34 43-76 3-36 (76)
390 KOG0985 Vesicle coat protein c 52.1 2E+02 0.0043 37.1 13.2 144 47-214 1105-1248(1666)
391 KOG1914 mRNA cleavage and poly 51.2 5.2E+02 0.011 31.3 17.7 49 131-179 412-460 (656)
392 PF10255 Paf67: RNA polymerase 51.2 24 0.00052 40.6 5.4 57 90-149 128-193 (404)
393 KOG1258 mRNA processing protei 51.1 5.3E+02 0.011 31.3 18.3 145 58-206 267-420 (577)
394 PF10345 Cohesin_load: Cohesin 50.7 1.9E+02 0.0041 34.9 13.1 97 46-144 301-428 (608)
395 KOG0985 Vesicle coat protein c 49.6 90 0.002 39.9 9.9 107 48-168 1196-1327(1666)
396 cd02656 MIT MIT: domain contai 49.3 39 0.00084 29.1 5.2 34 42-75 2-35 (75)
397 PF07721 TPR_4: Tetratricopept 48.1 22 0.00047 24.5 2.8 23 86-110 3-25 (26)
398 cd02683 MIT_1 MIT: domain cont 47.8 35 0.00076 30.1 4.8 32 44-75 4-35 (77)
399 PF04010 DUF357: Protein of un 47.6 38 0.00083 29.9 4.9 43 30-72 19-61 (75)
400 cd01615 CIDE_N CIDE_N domain, 47.2 62 0.0014 29.0 6.2 57 292-353 3-60 (78)
401 PF11207 DUF2989: Protein of u 47.0 46 0.001 34.9 6.2 72 63-140 123-198 (203)
402 KOG2581 26S proteasome regulat 46.1 1.7E+02 0.0038 33.9 10.9 119 101-219 141-280 (493)
403 cd06535 CIDE_N_CAD CIDE_N doma 46.0 57 0.0012 29.2 5.7 48 292-342 3-52 (77)
404 PF12739 TRAPPC-Trs85: ER-Golg 44.3 5.5E+02 0.012 29.5 16.7 155 48-213 210-397 (414)
405 PF11976 Rad60-SLD: Ubiquitin- 44.2 57 0.0012 27.5 5.4 44 293-336 2-48 (72)
406 cd02677 MIT_SNX15 MIT: domain 44.0 42 0.00091 29.5 4.6 34 42-75 2-35 (75)
407 PF08626 TRAPPC9-Trs120: Trans 43.2 4.3E+02 0.0094 34.8 15.4 132 42-173 238-464 (1185)
408 TIGR02710 CRISPR-associated pr 43.1 2.6E+02 0.0056 32.2 11.8 65 47-111 131-196 (380)
409 cd02680 MIT_calpain7_2 MIT: do 43.0 41 0.00088 29.8 4.4 33 43-75 3-35 (75)
410 PF02309 AUX_IAA: AUX/IAA fami 42.8 8.1 0.00018 40.3 0.0 65 292-357 110-197 (215)
411 smart00266 CAD Domains present 42.3 73 0.0016 28.3 5.8 57 293-354 2-59 (74)
412 COG4455 ImpE Protein of avirul 41.8 1.5E+02 0.0032 32.0 8.9 53 101-153 16-68 (273)
413 cd02684 MIT_2 MIT: domain cont 41.6 52 0.0011 28.9 4.8 33 43-75 3-35 (75)
414 PF10952 DUF2753: Protein of u 41.3 1.1E+02 0.0024 30.0 7.3 97 48-152 3-115 (140)
415 cd01812 BAG1_N Ubiquitin-like 41.3 58 0.0013 27.1 5.0 45 292-336 1-46 (71)
416 KOG4307 RNA binding protein RB 40.7 52 0.0011 40.0 6.0 50 307-357 875-929 (944)
417 PF05198 IF3_N: Translation in 40.2 43 0.00093 29.6 4.1 43 331-393 14-57 (76)
418 KOG0546 HSP90 co-chaperone CPR 40.2 21 0.00046 40.2 2.7 78 46-129 275-352 (372)
419 PF04053 Coatomer_WDAD: Coatom 39.9 3.5E+02 0.0076 31.6 12.6 30 117-146 344-373 (443)
420 COG3014 Uncharacterized protei 39.4 3.2E+02 0.0069 31.2 11.4 65 50-116 62-155 (449)
421 KOG0686 COP9 signalosome, subu 38.6 1.3E+02 0.0028 34.9 8.4 96 48-146 152-255 (466)
422 KOG0292 Vesicle coat complex C 38.5 4E+02 0.0086 34.0 12.9 115 43-157 988-1121(1202)
423 PF03745 DUF309: Domain of unk 37.1 68 0.0015 27.2 4.7 59 50-108 3-61 (62)
424 PF07315 DUF1462: Protein of u 37.0 29 0.00062 31.9 2.5 58 296-357 1-62 (93)
425 smart00386 HAT HAT (Half-A-TPR 36.8 86 0.0019 21.2 4.6 27 135-161 2-28 (33)
426 COG4455 ImpE Protein of avirul 36.5 2.7E+02 0.0059 30.0 9.9 65 51-121 6-70 (273)
427 PRK13184 pknD serine/threonine 36.2 1.4E+02 0.003 38.2 9.1 91 60-157 533-628 (932)
428 PF09379 FERM_N: FERM N-termin 35.7 1.1E+02 0.0023 26.2 5.9 49 297-345 2-54 (80)
429 COG5191 Uncharacterized conser 35.5 36 0.00079 38.0 3.5 72 48-125 109-181 (435)
430 PF13226 DUF4034: Domain of un 35.4 4.4E+02 0.0096 29.0 11.8 124 52-177 6-156 (277)
431 TIGR03504 FimV_Cterm FimV C-te 35.1 59 0.0013 25.8 3.8 26 87-114 2-27 (44)
432 KOG0890 Protein kinase of the 34.9 2.9E+02 0.0063 38.5 11.9 114 44-165 1668-1800(2382)
433 cd02682 MIT_AAA_Arch MIT: doma 34.4 72 0.0016 28.3 4.6 30 138-167 31-60 (75)
434 PF04053 Coatomer_WDAD: Coatom 34.1 5.1E+02 0.011 30.3 12.8 104 55-180 270-373 (443)
435 cd06538 CIDE_N_FSP27 CIDE_N do 32.8 1.4E+02 0.0031 26.8 6.1 58 291-354 2-60 (79)
436 KOG2561 Adaptor protein NUB1, 31.9 2.9E+02 0.0062 32.5 9.8 106 43-148 160-295 (568)
437 KOG3783 Uncharacterized conser 31.7 1.2E+02 0.0025 36.2 6.9 89 67-161 254-344 (546)
438 PHA02537 M terminase endonucle 30.8 4E+02 0.0087 28.5 10.3 96 56-153 93-211 (230)
439 KOG2041 WD40 repeat protein [G 30.5 3.9E+02 0.0085 33.3 10.9 137 52-212 740-878 (1189)
440 PF11846 DUF3366: Domain of un 30.5 1.8E+02 0.004 29.3 7.5 51 101-152 126-176 (193)
441 cd02679 MIT_spastin MIT: domai 30.4 89 0.0019 27.9 4.5 34 43-76 5-38 (79)
442 PF15469 Sec5: Exocyst complex 30.1 4.6E+02 0.01 26.3 10.3 20 95-116 97-116 (182)
443 KOG2581 26S proteasome regulat 30.0 5.6E+02 0.012 30.0 11.6 71 83-155 208-282 (493)
444 KOG1914 mRNA cleavage and poly 29.8 1.1E+03 0.023 28.8 14.1 155 58-215 305-464 (656)
445 PF07219 HemY_N: HemY protein 28.0 2.7E+02 0.0058 25.8 7.6 36 43-78 56-91 (108)
446 cd06539 CIDE_N_A CIDE_N domain 27.7 1.6E+02 0.0034 26.5 5.5 57 292-354 3-61 (78)
447 PF02991 Atg8: Autophagy prote 27.6 46 0.001 31.2 2.3 27 301-327 33-59 (104)
448 smart00386 HAT HAT (Half-A-TPR 26.7 1.6E+02 0.0034 19.8 4.5 26 101-126 2-27 (33)
449 PF09797 NatB_MDM20: N-acetylt 26.5 3.4E+02 0.0074 30.3 9.5 45 101-145 198-242 (365)
450 PF09670 Cas_Cas02710: CRISPR- 25.9 6.6E+02 0.014 28.6 11.7 125 86-212 133-267 (379)
451 PF07163 Pex26: Pex26 protein; 25.6 9.7E+02 0.021 26.8 14.9 128 47-177 36-181 (309)
452 COG4941 Predicted RNA polymera 25.3 1E+03 0.023 27.3 12.4 132 58-193 268-406 (415)
453 PF07929 PRiA4_ORF3: Plasmid p 25.1 85 0.0018 31.6 4.0 37 293-329 6-46 (179)
454 cd07603 BAR_ACAPs The Bin/Amph 24.9 7.6E+02 0.017 25.7 11.0 44 550-593 103-156 (200)
455 cd06536 CIDE_N_ICAD CIDE_N dom 24.8 2.3E+02 0.0049 25.6 6.0 57 292-354 3-63 (80)
456 COG4837 Uncharacterized protei 24.6 1.5E+02 0.0033 27.6 5.0 58 296-357 8-69 (106)
457 KOG0739 AAA+-type ATPase [Post 24.3 3.1E+02 0.0067 31.0 8.1 33 42-74 6-38 (439)
458 KOG0276 Vesicle coat complex C 24.2 3.3E+02 0.0071 33.3 8.8 84 65-163 626-717 (794)
459 PF00076 RRM_1: RNA recognitio 24.1 2.3E+02 0.005 22.6 5.8 52 305-358 4-60 (70)
460 PF09205 DUF1955: Domain of un 24.1 4.1E+02 0.0089 26.7 8.1 50 130-179 96-145 (161)
461 cd02679 MIT_spastin MIT: domai 23.9 1.2E+02 0.0026 27.2 4.2 33 101-148 4-36 (79)
462 PF08859 DGC: DGC domain; Int 22.7 30 0.00065 32.6 0.2 52 451-505 57-108 (110)
463 COG2015 Alkyl sulfatase and re 22.7 1.7E+02 0.0037 34.7 6.0 49 46-98 452-500 (655)
464 smart00213 UBQ Ubiquitin homol 22.6 2.1E+02 0.0045 22.8 5.1 43 294-336 3-46 (64)
465 KOG0890 Protein kinase of the 22.5 9.8E+02 0.021 33.8 13.5 100 47-150 1630-1732(2382)
466 PF11543 UN_NPL4: Nuclear pore 22.2 96 0.0021 27.6 3.3 44 294-338 7-51 (80)
467 PF11846 DUF3366: Domain of un 22.1 2.9E+02 0.0062 27.9 7.2 49 62-117 127-175 (193)
468 PRK11619 lytic murein transgly 22.1 1.5E+03 0.033 27.8 14.6 74 500-576 559-636 (644)
469 COG5159 RPN6 26S proteasome re 22.0 8.3E+02 0.018 27.5 10.7 162 50-213 7-192 (421)
470 PF04190 DUF410: Protein of un 21.8 1E+03 0.022 25.6 12.5 89 87-177 13-113 (260)
471 cd02681 MIT_calpain7_1 MIT: do 21.6 1.4E+02 0.0031 26.4 4.2 17 132-148 18-34 (76)
472 PF04348 LppC: LppC putative l 21.6 31 0.00067 41.1 0.0 121 44-169 22-147 (536)
473 smart00745 MIT Microtubule Int 21.4 2.2E+02 0.0047 24.4 5.3 14 139-152 34-47 (77)
474 cd02683 MIT_1 MIT: domain cont 21.3 3E+02 0.0065 24.3 6.1 29 137-165 30-58 (77)
475 PRK14065 exodeoxyribonuclease 21.2 1.5E+02 0.0033 27.0 4.2 38 470-511 42-79 (86)
476 PF01239 PPTA: Protein prenylt 21.1 2.3E+02 0.0049 20.1 4.5 26 106-131 3-28 (31)
477 cd06537 CIDE_N_B CIDE_N domain 20.9 3.2E+02 0.0068 24.8 6.1 57 292-354 3-60 (81)
478 PF12854 PPR_1: PPR repeat 20.7 1.9E+02 0.0041 21.2 4.0 25 120-144 7-31 (34)
479 cd00754 MoaD Ubiquitin domain 20.5 2.6E+02 0.0056 23.8 5.6 28 299-326 14-41 (80)
480 PF00788 RA: Ras association ( 20.5 5.6E+02 0.012 22.1 8.7 61 294-354 5-74 (93)
481 PF00165 HTH_AraC: Bacterial r 20.4 33 0.00072 26.1 -0.1 19 456-474 23-41 (42)
482 cd07602 BAR_RhoGAP_OPHN1-like 20.4 1E+03 0.022 25.1 11.2 115 482-597 23-167 (207)
No 1
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=1.8e-87 Score=765.79 Aligned_cols=657 Identities=40% Similarity=0.575 Sum_probs=505.4
Q ss_pred CCCCCCCCCCCCCCCCcc-cc------cCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004055 1 MGKSGGRRKKGGSNANQV-AA------DNSNANISTNSNGGVDL-DSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNA 72 (776)
Q Consensus 1 mgk~~~~Kk~~~~~~~~~-~~------~~~~~~~~~~~~~~~d~-D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KA 72 (776)
||++++++|++....+.. ++ .++.+...+ -.++.++ |..+++.++..++++||.+|++++|.+|...|..+
T Consensus 1 ~~d~~~k~~n~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~d~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~ 79 (748)
T KOG4151|consen 1 MGDKTLKSKNNLDVLNDAENGAELVGEKSKKPKVLS-IVKSLDDEDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCA 79 (748)
T ss_pred CCccccccCCcccccccccccccccccccccchhhh-hhhcccccchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhh
Confidence 899999999995322221 11 111212222 2344444 99999999999999999999999999999999999
Q ss_pred HHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 73 LRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 73 LkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
+.+.|..|.+.+.++.|++.||+++|+++|..++.+|..|+...|...++++.++++|..+++++.|++++.-...++|.
T Consensus 80 ~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~ 159 (748)
T KOG4151|consen 80 IKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPS 159 (748)
T ss_pred heeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHhh---CCCC--CCH--HHHHHHHHHHHhCCCccchhHHhhhhcCCCCCCccCCCC
Q 004055 153 HRDALEIARRLRTALGPRQEAQQDLQS---RPSP--AAL--GASAVRGAPIAGLGPCLPARPVGKKAGAPAGGLLVSPSY 225 (776)
Q Consensus 153 N~~al~~la~ll~~lg~~qeA~~~l~k---kl~P--~~~--~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~~v~p~~ 225 (776)
++.+...+..++..+..++-+....+. ...| ..+ ...+.+.+ ++..+.++.++..+.+. .+...+
T Consensus 160 ~~~~~eif~elk~ll~~~d~~s~~~~~~~~~~~~vg~~~~~~~~i~l~r-l~~~~~~~~~~~~~~~~-----~~~~~~-- 231 (748)
T KOG4151|consen 160 NVSASEIFEELKGLLELKDLASDESELPLEAVAPVGASPALIAKICLQR-LYKSKKTDCVEAFLTKD-----GERLFK-- 231 (748)
T ss_pred cchHHHHHHHHHHHHhhcCCccccccCChhhhccccCchHHHHHHHHHH-HhhhccchhHHhhcCCc-----HHhhhh--
Confidence 988888777766655333222211100 0111 111 22222222 22333444333333221 110000
Q ss_pred cccccccccccccCCC--cccccceeeecCCCCCCCCCCCCCcccccccccccccCCCCCcccccccccceeEeecccee
Q 004055 226 KQDRPLMNVTAENGLE--NKTQFSKLALKPSNGRSCGNPSKDSHREQSLSSAVSLDTRGQPLEVPVRWRPLKLVYDHDIR 303 (776)
Q Consensus 226 ~~~~~~~~~~~~~~~~--~~~~~P~~~l~p~~~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~~~~~~~vK~~~~~DiR 303 (776)
..+..-|...+.. .....-.....|..-+ ...+ + ...-....+.+.+.+.....+|+.+|+++++|||
T Consensus 232 ---~~v~~~~~d~~~~~~~~~~l~a~~~~~v~~~---~~~~-~---~e~l~~~~l~~~~~~~e~~~~~~~~~~v~~~~i~ 301 (748)
T KOG4151|consen 232 ---ERVFEDPSDLKFKKKSKCKLKAAQEDPVSDT---VKVM-D---KEQLLEEILAVGGSQDELAQVWRTLKLVYGDDIR 301 (748)
T ss_pred ---hhhccCcccchhhhhhhhhhhhhcCCcccch---hhhh-h---HHHHHHHhhcccccchHHhhhhhhhhhhhccHHH
Confidence 0000001111111 0000000111110000 0000 0 0001112233555666677899999999999999
Q ss_pred EEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCCCCC-cEEEEEEe
Q 004055 304 LGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSDSVG-MLRLHIVD 382 (776)
Q Consensus 304 ~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g-~~rL~v~e 382 (776)
+.++|.+|++..||+.|.+ ||..+.|+|||+|.+||+||||++++|+|+.+++ ...+ .+|+|+++
T Consensus 302 laql~~~~~~~~lR~ii~~-~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~-------------i~l~~~~r~~~ve 367 (748)
T KOG4151|consen 302 LAQLPLNCTVKILREIIHS-FPSLRAVLIKYRDTEGDLVTITTTAELRLAESAV-------------IKLGKTLRFYVVE 367 (748)
T ss_pred HHhcchhhchHHHHHHHhc-ccchhhheeeeccCCcceeeeeehhhhhhhhHHH-------------HHHHHHhhhheee
Confidence 9999999999999999999 9999999999999999999999999999999988 5666 89999999
Q ss_pred cCCCCCCCchhhhhcccccccCCCCCCCCCCCchhhHHHHhhhhhhhhhchhhhccCCCCCCcccccchhhHHHHHHHHH
Q 004055 383 VSPEQEPPLLEEEEEKPLESEGTKGDESGSHSSLAESVVEAADTEIDKTDKDAAKEKPGSEDLSKEVEMDDWLFEFAQLF 462 (776)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eid~w~~~fa~lf 462 (776)
++|+|+|.+.... .+.+....+++++- .+ ++ +
T Consensus 368 ~s~~qd~ry~s~~----a~~ke~~i~d~~s~--~a----------ln---------~----------------------- 399 (748)
T KOG4151|consen 368 VSPEQDPRYLSID----AELKELKIEDSSSS--KA----------LN---------G----------------------- 399 (748)
T ss_pred cCccccchhhccc----cchhhhhccccchH--HH----------HH---------h-----------------------
Confidence 9999999866321 11222233333330 00 00 0
Q ss_pred HHhhcCCCCc-ccchHHHHHHHhHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhcCCcccccchHH
Q 004055 463 RTHVGIDPDA-HIDLHELGMELCSEALEETVTSEEAQNLFDKAALKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEV 541 (776)
Q Consensus 463 ~~~~g~d~d~-~ldl~~~g~~~~~eale~~v~~~~a~~lf~~a~~kfqe~aa~a~fnwgnvh~~~ark~~~~~~~~~~~~ 541 (776)
++=+.+. |+|+|+|||++|++||+++||||.||++||.|+.+||||+|+++|||||||||+|||+++++++++.++
T Consensus 400 ---l~~~~~~~~~~~~~lg~~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n~~~v~~~r~rk~~~~~~~~~~~s 476 (748)
T KOG4151|consen 400 ---LKGDAVESYLDLHELGMKLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLNWGNVHMSRARKRLSLDEDPSCES 476 (748)
T ss_pred ---hhcccccccccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccccchHHHHHHHHhhccCcchhhhH
Confidence 0001111 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHhHhhHHHHhhhhhhhhhhhccCCCCCChhHHHHHHHHHHHH
Q 004055 542 VAAQLQTAYDWVKEKYSLAKEKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSYALAKKIDLSGWDATETLQLFDSAEEK 621 (776)
Q Consensus 542 ~~~~~~~~~~~~~~~y~~a~~~ye~a~~ikpdf~e~~~a~g~q~fe~akl~w~~~~~~~~d~~~~~s~~~~~~~~~a~~~ 621 (776)
+++++. |+..+|..|++||+.+..|||+||+++|+|||||||.|||+|||||+.+||+.+|.+.+|+.+|++|+.+
T Consensus 477 vakt~~----~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~~~v~~~~~s~~~~ 552 (748)
T KOG4151|consen 477 VAKTVS----WAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERSYEVVKPLDSALHN 552 (748)
T ss_pred HHHHHH----HHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCchhhhhhhhcchhhh
Confidence 988775 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HhhcCCCchhhHHHHHHHhcCCCCCCCCCCCCCCCCChhHHHHHHHhhhhhHHHHhhhhhhhhh
Q 004055 622 MKTATEMWEKLEEQR-AIEQKDPSKRDELLKRRKKQGSGSDGDPSGTGEGEISADEAAEQAAVMRSQIHLFWGNMLFERS 700 (776)
Q Consensus 622 ~~~~~~~we~~e~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~eq~~~~~~q~~~~wg~~l~e~s 700 (776)
|++||++||.+++++ +++.++..+.+ ++ ++.+ +++....++.|++++|++.|+||||++||.+|||||
T Consensus 553 d~~~~en~E~L~altnLas~s~s~r~~-i~---ke~~-------~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~s 621 (748)
T KOG4151|consen 553 DEKGLENFEALEALTNLASISESDRQK-IL---KEKA-------LGKIEELMTEENPALQRAALESIINLLWSPLLYERS 621 (748)
T ss_pred hHHHHHHHHHHHHhhcccCcchhhHHH-HH---HHhc-------chhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999 78777765444 54 3333 233344588999999999999999999999999999
Q ss_pred HHHhhcCccchhhhHHHHHHHHHhcCCChhh-HHHHHhhccCC-CcccccccccccCC
Q 004055 701 QVECKLGLDGWNKNLDAAIDRFKLAGASESD-VSMVLKNHCSN-GDAVEGEEKKVQNQ 756 (776)
Q Consensus 701 ~~~~~~g~~~w~~~l~~a~ekf~~ag~~~~d-i~~~~~nh~~~-~~~~~~~~~~~~~~ 756 (776)
++++++|++.|..++++++|+|++|||+..| |..+++|||++ ...++|..+.+.-+
T Consensus 622 i~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i 679 (748)
T KOG4151|consen 622 IVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAI 679 (748)
T ss_pred hhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhh
Confidence 9999999999999999999999999999999 99999999995 44446666665444
No 2
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=99.88 E-value=8.7e-23 Score=180.25 Aligned_cols=86 Identities=20% Similarity=0.371 Sum_probs=82.7
Q ss_pred cccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 290 RWRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
++++|||||++|+|+|.||++|+|.+|.++|+++|+...+|+|||+|+ ||+|||+|++||++|+.++ ++.+||+
T Consensus 1 ~~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-GD~iti~sq~DLd~Ai~~a-----~~~~~~~ 74 (86)
T cd06408 1 RKIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-GDMITMGDQDDLDMAIDTA-----RSEARKQ 74 (86)
T ss_pred CcEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-CCCccccCHHHHHHHHHHH-----HHHHHhh
Confidence 467999999999999999999999999999999999999999999997 9999999999999999999 8889999
Q ss_pred CCCCCcEEEEEE
Q 004055 370 SDSVGMLRLHIV 381 (776)
Q Consensus 370 ~~~~g~~rL~v~ 381 (776)
++.+|+++|||.
T Consensus 75 ~~~~~~~e~w~~ 86 (86)
T cd06408 75 GSDMGKLEIWVM 86 (86)
T ss_pred cccccceeeecC
Confidence 999999999983
No 3
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=99.80 E-value=1.8e-19 Score=156.79 Aligned_cols=64 Identities=38% Similarity=0.510 Sum_probs=59.1
Q ss_pred eeEeeccceeEEeccC-CCCHHHHHHHHHhH----CCCCCceEEEEecCCCCeeeecChHHHHHHHHhc
Q 004055 294 LKLVYDHDIRLGQMPV-NCSFKALREIVSKR----FPSSKSVLIKYKDNDGDLVTITCTAELRLAESAS 357 (776)
Q Consensus 294 vK~~~~~DiR~~~v~~-~~~~~~L~~~v~~k----F~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~ 357 (776)
||++||+|||++++|. +|+|.+|+++|++. ||+++.|.|||+|+|||||||||++||++|++++
T Consensus 3 iK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~ 71 (81)
T cd06401 3 LKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCS 71 (81)
T ss_pred EEEEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcC
Confidence 7999999999999997 59999999999754 5566899999999999999999999999999887
No 4
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=8.8e-18 Score=177.43 Aligned_cols=125 Identities=32% Similarity=0.515 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH
Q 004055 41 IFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV 120 (776)
Q Consensus 41 ~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~ 120 (776)
+....|+.+|.+||.+++.++|.+|+..|++||.++|++ +.+|+|+|++|.+|| +|+.|+.+|..||.+||.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n----AVyycNRAAAy~~Lg--~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN----AVYYCNRAAAYSKLG--EYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc----chHHHHHHHHHHHhc--chHHHHHHHHHHHhcChHHH
Confidence 577899999999999999999999999999999999998 999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQ 171 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~q 171 (776)
++|.++|++|+.+|++.+|++.|+++|.++|+|..+...+..+...+++..
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999888877654
No 5
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.73 E-value=1.5e-17 Score=147.76 Aligned_cols=70 Identities=30% Similarity=0.447 Sum_probs=66.1
Q ss_pred ccceeEEec--cCCCCHHHHHHHHHhHCCCCC--ceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCCCCC
Q 004055 299 DHDIRLGQM--PVNCSFKALREIVSKRFPSSK--SVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSDSVG 374 (776)
Q Consensus 299 ~~DiR~~~v--~~~~~~~~L~~~v~~kF~~~~--~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g 374 (776)
..|||++.+ |.+|+|.+|+++|+++||+++ +|+|||+|+|||+|||+|++||+||++++ ..+
T Consensus 13 ~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~--------------~~~ 78 (87)
T cd06402 13 NAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSL--------------NDD 78 (87)
T ss_pred ccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcC--------------CCC
Confidence 479999998 889999999999999999887 89999999999999999999999999998 478
Q ss_pred cEEEEEEe
Q 004055 375 MLRLHIVD 382 (776)
Q Consensus 375 ~~rL~v~e 382 (776)
.+||||+|
T Consensus 79 ~~RlyI~~ 86 (87)
T cd06402 79 TFRIYIKE 86 (87)
T ss_pred cEEEEEEe
Confidence 99999997
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=8.9e-16 Score=172.73 Aligned_cols=169 Identities=21% Similarity=0.078 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+-++.|-+.||.+-.+|++.+|+..|..+|++.|++ +++|.|+|.|++..| +.+.|.+.|..||+++|....+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~f----ida~inla~al~~~~--~~~~a~~~~~~alqlnP~l~ca~ 187 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKF----IDAYINLAAALVTQG--DLELAVQCFFEALQLNPDLYCAR 187 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh----hHHHhhHHHHHHhcC--CCcccHHHHHHHHhcCcchhhhh
Confidence 568889999999999999999999999999999997 999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
..+|..+-+.|++.+|...|.+++..+|....+|.+++.+....|+...|+..|.+ +++|..+++|+++|.+|-..+.
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999987 7999999999999999999999
Q ss_pred ccchhHHhhhhcCCCCC
Q 004055 202 CLPARPVGKKAGAPAGG 218 (776)
Q Consensus 202 ~eeArk~~KKa~~s~P~ 218 (776)
++.|...+.++....|-
T Consensus 268 ~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPN 284 (966)
T ss_pred chHHHHHHHHHHhcCCc
Confidence 99999999998644443
No 7
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9.4e-16 Score=169.49 Aligned_cols=103 Identities=45% Similarity=0.730 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 37 LDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ 116 (776)
Q Consensus 37 ~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld 116 (776)
+.....++.|..++.+||.+|+.|.|++||.+|++||.+.|+. +..|.||+.||..+| ++.+.+.+|.+||+++
T Consensus 106 ~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e----piFYsNraAcY~~lg--d~~~Vied~TkALEl~ 179 (606)
T KOG0547|consen 106 MLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE----PIFYSNRAACYESLG--DWEKVIEDCTKALELN 179 (606)
T ss_pred cChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC----chhhhhHHHHHHHHh--hHHHHHHHHHHHhhcC
Confidence 4456678999999999999999999999999999999999997 789999999999999 9999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 117 PRFVRALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
|++++||++|+.++..+|++++|+.|+.-
T Consensus 180 P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 180 PDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 99999999999999999999999888753
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.67 E-value=5.5e-15 Score=173.10 Aligned_cols=110 Identities=37% Similarity=0.616 Sum_probs=100.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 35 VDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 35 ~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
+.+++.+....+..+++.|+.+|+.|+|+.|+..|+++|.+.|+ +.+|+|+|.||+.+| +|++|+..|.+||+
T Consensus 116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-----~~~~~n~a~~~~~l~--~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-----PVYYSNRAACHNALG--DWEKVVEDTTAALE 188 (615)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHhC--CHHHHHHHHHHHHH
Confidence 45566677788999999999999999999999999999999996 568999999999999 99999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004055 115 VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEP 151 (776)
Q Consensus 115 ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP 151 (776)
++|++.++|+++|.+|..+|++++|+.+|.+++.+++
T Consensus 189 l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~ 225 (615)
T TIGR00990 189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDG 225 (615)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999988876655443
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.1e-15 Score=163.67 Aligned_cols=140 Identities=28% Similarity=0.454 Sum_probs=126.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----------CChHHHHHHHHHHHHHcCCCCH
Q 004055 34 GVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-----------PDRAVFHSNRAACLMQMKPINY 102 (776)
Q Consensus 34 ~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-----------~d~A~ay~n~A~cy~~LG~gdy 102 (776)
.+.+...+.++.|...++.||.+|+.|+|..|+..|.+|+...+... .....+|.|+|.||++|+ +|
T Consensus 196 s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~--~~ 273 (397)
T KOG0543|consen 196 SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK--EY 273 (397)
T ss_pred ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh--hH
Confidence 45677778999999999999999999999999999999999877532 135578999999999999 99
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004055 103 ETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQ 175 (776)
Q Consensus 103 eeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~ 175 (776)
..|+..|+++|.++|+|++|||++|.||..+|+|+.|..+|+++++++|+|..+...+..|..+..++.....
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888766555433
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=1.6e-14 Score=169.18 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+..+...|..++..|++++|+..|+++|.++|.. ...|+++|.++..+| +|++|+..|.+++.++|+++.+++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~----~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV----TQSYIKRASMNLELG--DPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45568889999999999999999999999999987 889999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCc
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPC 202 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ 202 (776)
.+|.++..+|++++|+.+|++++.++|++..++..++.++..+|++++|+..+.. ...|.++..+..+|.++..+|++
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 9999999999999999999999999999999999999999999999999999987 57799999999999999999999
Q ss_pred cchhHHhhhhcCCCCC
Q 004055 203 LPARPVGKKAGAPAGG 218 (776)
Q Consensus 203 eeArk~~KKa~~s~P~ 218 (776)
++|...+.++....|.
T Consensus 484 ~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 484 DEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999998765554
No 11
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.61 E-value=2.2e-15 Score=131.59 Aligned_cols=79 Identities=39% Similarity=0.550 Sum_probs=70.7
Q ss_pred cceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccC
Q 004055 292 RPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKS 370 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~ 370 (776)
.+||++|++|+|.+.+|.+++|.+|+.+|.++|+.. ..+.|+|+|+|||+|||+|++||.+|++.+..
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~----------- 70 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDS----------- 70 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHH-----------
Confidence 579999999999999999999999999999999975 68999999999999999999999999988711
Q ss_pred CCCCcEEEEEE
Q 004055 371 DSVGMLRLHIV 381 (776)
Q Consensus 371 ~~~g~~rL~v~ 381 (776)
...+.++|||.
T Consensus 71 ~~~~~l~l~v~ 81 (81)
T smart00666 71 LGSKKLRLHVF 81 (81)
T ss_pred cCCceEEEEeC
Confidence 12577999884
No 12
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.61 E-value=2.5e-14 Score=153.61 Aligned_cols=169 Identities=21% Similarity=0.134 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..+...|++..|+..|+++++++|++ +.+|+++|.+|..+| +|++|+..|+++++++|++..++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~ 135 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNYAY 135 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHH
Confidence 457789999999999999999999999999999997 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC-----------------------
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR----------------------- 180 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk----------------------- 180 (776)
+.+|.+++..|++++|+.+|++++.++|+++... ....+....++..+|+..+.+.
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~ 214 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISE 214 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCH
Confidence 9999999999999999999999999999997421 1122233344555555544220
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 181 ----------------PSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 181 ----------------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
+.|..+.+++.+|.++..+|++++|..+++++....|++
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 215 ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 123344678889999999999999999999999888765
No 13
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.59 E-value=4.3e-15 Score=130.25 Aligned_cols=81 Identities=35% Similarity=0.508 Sum_probs=72.9
Q ss_pred ccceeEeeccceeE-EeccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccc
Q 004055 291 WRPLKLVYDHDIRL-GQMPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEAD 368 (776)
Q Consensus 291 ~~~vK~~~~~DiR~-~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~ 368 (776)
+++||++|++|+|+ +.++.+++|.+|+.+|+.+|+.. ..|.|+|+|+|||+|||+|++||.+|+..+...
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~-------- 72 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKES-------- 72 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHC--------
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhc--------
Confidence 46899999999999 99999999999999999999977 889999999999999999999999999887111
Q ss_pred cCCCCCcEEEEEEe
Q 004055 369 KSDSVGMLRLHIVD 382 (776)
Q Consensus 369 ~~~~~g~~rL~v~e 382 (776)
....++|||++
T Consensus 73 ---~~~~lrl~v~~ 83 (84)
T PF00564_consen 73 ---GSKTLRLFVQD 83 (84)
T ss_dssp ---TTSCEEEEEEE
T ss_pred ---CCCcEEEEEEe
Confidence 34589999985
No 14
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.2e-14 Score=151.87 Aligned_cols=270 Identities=20% Similarity=0.289 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.|+.++++||.||+.++|..|+..|+++|+..-.++...+.+|+|||+|.+.+| +|..|+.+|.+|+.++|.+.+||
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~--NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG--NYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHhcCcchhhhh
Confidence 5899999999999999999999999999999987776667899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-------HHcCChHHHHHHHhhCCCCCC--HHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR-------TALGPRQEAQQDLQSRPSPAA--LGASAVRGA 194 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll-------~~lg~~qeA~~~l~kkl~P~~--~~a~~~lA~ 194 (776)
++-|.|++.|.++++|+..++..+.++-....+......+. ....+.+.......++..... ..+.-.+..
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L~~er~~rK~~~e~kk~~e~~krl~~a~k~r~i 236 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKLIEERDVRKKNAEEKKERESNKRLLQAIKARNI 236 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998888766554444331110 001111111111110000000 000000000
Q ss_pred --HHHhCCCccchhHHhhhhcCCCCCCccCCCCcccccccccccccCCCcccccceeeecCCCCCCCCCCCCCccccccc
Q 004055 195 --PIAGLGPCLPARPVGKKAGAPAGGLLVSPSYKQDRPLMNVTAENGLENKTQFSKLALKPSNGRSCGNPSKDSHREQSL 272 (776)
Q Consensus 195 --~l~~LG~~eeArk~~KKa~~s~P~~~v~p~~~~~~~~~~~~~~~~~~~~~~~P~~~l~p~~~~~~~~~~~~~~~~~~~ 272 (776)
+....++.+.... ..-.|...+.... ......++++.+.+|.+++||--+.|
T Consensus 237 kl~~~~~~~r~~~se-----------~~~~~~~L~~~~~-~~~~~~D~~s~LiwP~l~~YPe~~qs-------------- 290 (390)
T KOG0551|consen 237 KLSEAACEDRDSLSE-----------ELFLPGLLPENPH-GLRLSLDGQSRLIWPALFLYPEYAQS-------------- 290 (390)
T ss_pred hcchhhhccchhhhh-----------hhcCCCcCCCCcc-ccccccCCcceeehhHHHhccchhhc--------------
Confidence 0000001000000 0000111111111 11223366788999999999822111
Q ss_pred ccccccCCCCCcccccccccceeEeeccceeEEeccCCCCHHHHHHHHHh---------HCCCCCceEEEEecCCCCeee
Q 004055 273 SSAVSLDTRGQPLEVPVRWRPLKLVYDHDIRLGQMPVNCSFKALREIVSK---------RFPSSKSVLIKYKDNDGDLVT 343 (776)
Q Consensus 273 ~t~~~~~v~~~~~~~~~~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~---------kF~~~~~~~iKYkDeDGDlVT 343 (776)
| .+-.++.+||+.+|+.-|-. +|. .++|.+.|-|+.|-||-
T Consensus 291 ----------------------------D-Fv~e~~E~tT~~elL~~vl~~p~~wD~~~~y~-p~nv~Vf~e~~~~gL~k 340 (390)
T KOG0551|consen 291 ----------------------------D-FVSEVSELTTVIELLKTVLGEPAPWDLEQKYN-PDNVLVFMETEAGGLIK 340 (390)
T ss_pred ----------------------------c-hhhhccccccHHHHHHHHhCCCCCCCHHhccC-ccceeEEEeccccceee
Confidence 1 22346788888888877643 333 67899999999988999
Q ss_pred ecChHHHHHHHHhcccccccCcccccCCCCCcEEEEEE
Q 004055 344 ITCTAELRLAESASDSLMTKEPEADKSDSVGMLRLHIV 381 (776)
Q Consensus 344 i~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g~~rL~v~ 381 (776)
+.-.-+|.-++.-- + =.-..|-+.|||+
T Consensus 341 V~~~~~~~~iL~~~-~---------~~l~~g~~~i~Vv 368 (390)
T KOG0551|consen 341 VGKKSTLLDILKHP-G---------VFLKDGALKIYVV 368 (390)
T ss_pred ccccchHHHHHcCC-C---------eeecCCceEEEEe
Confidence 99999988888432 0 1235678888888
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-14 Score=163.92 Aligned_cols=169 Identities=23% Similarity=0.160 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
-..+|.+.||.|-..+.|++|+..|.+|+.+.|.. +.+|.|+|-+|+..| ..+-||..|.+||+++|+++.||.
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~----A~a~gNla~iYyeqG--~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH----AVAHGNLACIYYEQG--LLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc----hhhccceEEEEeccc--cHHHHHHHHHHHHhcCCCchHHHh
Confidence 36789999999999999999999999999999987 788888888888888 888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCc
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPC 202 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ 202 (776)
++|.++-..|+..+|.++|.++|.+.|+++++..+++.++..+|..+.|...|.+ ...|..+.+..++|.+|..+|++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccH
Confidence 8888888888888888888888888888888888888888888888888887766 45677777777777777777777
Q ss_pred cchhHHhhhhcCCCCCC
Q 004055 203 LPARPVGKKAGAPAGGL 219 (776)
Q Consensus 203 eeArk~~KKa~~s~P~~ 219 (776)
++|..+++.+....|.-
T Consensus 405 ~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHHHHHHHHhcCchH
Confidence 77777777777666653
No 16
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.4e-14 Score=143.05 Aligned_cols=127 Identities=37% Similarity=0.683 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
+..+..++.+||.+|..|+|++|...|+.||.+-|... ..++.+|.|+|.|+++++ .++.||.+|.+||+++|.|.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~--k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR--KWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh--hHHHHHHHHHhhHhcCchhHH
Confidence 56789999999999999999999999999999998754 357889999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQ 171 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~q 171 (776)
|+.+||.+|..+.+|++|+.+|.+++.++|.+..+...+.++--.+....
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERN 219 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999988877777655554433
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=7.9e-13 Score=130.03 Aligned_cols=166 Identities=20% Similarity=0.110 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|++++..+|.+ ..++..+|.+|..+| ++++|+..+.+++..+|.+..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~ 102 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDVL 102 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHH
Confidence 457889999999999999999999999999999987 789999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVE--PNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~Ld--P~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
+.+|.++...|++++|+..|++++... |.....+..++.++...|++.+|...+.+ ...|.+...+..++.++...
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 999999999999999999999999864 56678888999999999999999999977 56788889999999999999
Q ss_pred CCccchhHHhhhhcCC
Q 004055 200 GPCLPARPVGKKAGAP 215 (776)
Q Consensus 200 G~~eeArk~~KKa~~s 215 (776)
|++++|..++.+....
T Consensus 183 ~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 183 GQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999997755
No 18
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.53 E-value=3.1e-14 Score=124.00 Aligned_cols=78 Identities=32% Similarity=0.447 Sum_probs=70.5
Q ss_pred cceeEeeccceeEEecc-CCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 292 RPLKLVYDHDIRLGQMP-VNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~-~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
.+||++|++|+|++.+| .+++|.+|+.+|+++|+.. ..|.|+|+|+|||+|||+|++||++|+..+..
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~---------- 70 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARR---------- 70 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhh----------
Confidence 36899999999999999 9999999999999999976 78999999999999999999999999988710
Q ss_pred CCCCCcEEEEE
Q 004055 370 SDSVGMLRLHI 380 (776)
Q Consensus 370 ~~~~g~~rL~v 380 (776)
...+.++|||
T Consensus 71 -~~~~~l~l~v 80 (81)
T cd05992 71 -SGSKKLRLFV 80 (81)
T ss_pred -cCCccEEEEe
Confidence 2477889887
No 19
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=99.53 E-value=3.6e-14 Score=124.18 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=62.4
Q ss_pred cceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCC--ceEEEEecCCCCeeeecChHHHHHHHHhc
Q 004055 292 RPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSK--SVLIKYKDNDGDLVTITCTAELRLAESAS 357 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~--~~~iKYkDeDGDlVTi~s~dDL~~A~~~~ 357 (776)
++||++|+.||+++.++.+++|.+|.++|++.|+..+ +|.|||+|||||.|||+||+||.+|+-..
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~ 68 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLY 68 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHH
Confidence 4799999999999999999999999999999988765 79999999999999999999999999776
No 20
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=99.51 E-value=7e-14 Score=123.65 Aligned_cols=79 Identities=25% Similarity=0.412 Sum_probs=70.7
Q ss_pred cceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCC--CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 292 RPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSS--KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~--~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
.+||++|++|++++.+|++++|.+|++.|+++|+.. .+|.|||+|+|||.|+|+||+||+.|+... .
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~-----------~ 69 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVY-----------R 69 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHH-----------H
Confidence 379999999999999999999999999999999976 589999999999999999999999999876 1
Q ss_pred CCCCCcEEEEEE
Q 004055 370 SDSVGMLRLHIV 381 (776)
Q Consensus 370 ~~~~g~~rL~v~ 381 (776)
.....+++|+|.
T Consensus 70 ~~~~~~v~l~v~ 81 (82)
T cd06407 70 SSGSHTIRLLVH 81 (82)
T ss_pred HCCCCeEEEEee
Confidence 124667888875
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.4e-14 Score=162.19 Aligned_cols=169 Identities=18% Similarity=0.141 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
..+.|.-.||++--+++|+.|+.+|.+||+++|+. +++|..+|-=+.... +|+.|...|+.||..+|++..|||
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f----aYayTLlGhE~~~~e--e~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF----AYAYTLLGHESIATE--EFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc----chhhhhcCChhhhhH--HHHhHHHHHHhhhcCCchhhHHHH
Confidence 46789999999999999999999999999999997 889999998888888 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCc
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPC 202 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ 202 (776)
.+|.+|.+.++++.|.-.|++|+.++|.|..+...++.++.++|+.++|+..+.+ .++|.++-..+-++.+++.+++|
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999999999999999987 68899999999999999999999
Q ss_pred cchhHHhhhhcCCCCCC
Q 004055 203 LPARPVGKKAGAPAGGL 219 (776)
Q Consensus 203 eeArk~~KKa~~s~P~~ 219 (776)
.+|...+..-....|.+
T Consensus 574 ~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 574 VEALQELEELKELVPQE 590 (638)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 99999988866555554
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.8e-13 Score=153.43 Aligned_cols=118 Identities=31% Similarity=0.600 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.+++.+..|+.+|+.|+|..|+..|++||..+|++ +.+|+|+|.||.+++ +|..|+.+|..+++++|++.++|
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D----a~lYsNRAac~~kL~--~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED----ARLYSNRAACYLKLG--EYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcCchHHHHH
Confidence 348899999999999999999999999999999998 999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
++.|.|+..+.+|+.|+..|+.++.+||++.++...+.+|...+
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998875
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=8.8e-13 Score=153.26 Aligned_cols=154 Identities=12% Similarity=-0.058 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 004055 59 NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEM 138 (776)
Q Consensus 59 kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~de 138 (776)
.+++++|+..|+++++++|++ +.+|..+|.++...| ++++|+..|++|++++|+++.+++.+|.+|...|++++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNN----PQALGLLGLINTIHS--EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 456899999999999999998 899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC---CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCC
Q 004055 139 AMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR---PSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 139 Al~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk---l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s 215 (776)
|+..|+++++++|.++.++..+..++...|++++|+..+.+. ..|..+.++..+|.++..+|++++|+....+....
T Consensus 391 Ai~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 391 ALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999999999999999888777777777889999999988762 35788889999999999999999999999886655
Q ss_pred CCC
Q 004055 216 AGG 218 (776)
Q Consensus 216 ~P~ 218 (776)
.|.
T Consensus 471 ~~~ 473 (553)
T PRK12370 471 EIT 473 (553)
T ss_pred cch
Confidence 444
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=1.3e-12 Score=134.27 Aligned_cols=169 Identities=21% Similarity=0.125 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kA 122 (776)
-..+....+.|..+++.|++..|...+++||+++|++ ..+|..+|.+|..+| +.+.|-+.|++|+.++|++..+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~----~~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY----YLAHLVRAHYYQKLG--ENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCccch
Confidence 3678899999999999999999999999999999998 899999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHh
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGV--EPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAG 198 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~L--dP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~ 198 (776)
+.+.|..++..|++++|...|++|+.. .|.-...+.+++.|..+.|+...|...+.+ ..+|..+....-++..++.
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 999999999999999999999999974 456788999999999999999999999988 6789999999999999999
Q ss_pred CCCccchhHHhhhhcCCCC
Q 004055 199 LGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 199 LG~~eeArk~~KKa~~s~P 217 (776)
.|+|-+|+.++++.....+
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 186 AGDYAPARLYLERYQQRGG 204 (250)
T ss_pred cccchHHHHHHHHHHhccc
Confidence 9999999999998664433
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.9e-13 Score=150.03 Aligned_cols=173 Identities=18% Similarity=0.133 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH
Q 004055 41 IFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV 120 (776)
Q Consensus 41 ~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~ 120 (776)
+...+|..+...|..+|-.|++-+|...|+++|.++|.+ ..+|..+|..|+... +-.+-..++++|..+||.|+
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~----~~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~ 394 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF----NSLYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENP 394 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc----chHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCC
Confidence 347789999999999999999999999999999999997 677999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHh
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAG 198 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~ 198 (776)
..|+.||.+++-+++|++|+.+|+++++|+|+|..++..++.++.+.+++++++..|+. +.-|..+..+...|.++..
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999976 5679999999999999999
Q ss_pred CCCccchhHHhhhhcCCCCCC
Q 004055 199 LGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 199 LG~~eeArk~~KKa~~s~P~~ 219 (776)
+++++.|.+.+.++....|..
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHhHHHHHHHHHHHHhhcccc
Confidence 999999999999998777663
No 26
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=99.48 E-value=1.8e-13 Score=123.31 Aligned_cols=81 Identities=27% Similarity=0.372 Sum_probs=71.9
Q ss_pred ceeEeeccceeEEeccC-----CCCHHHHHHHHHhHCCCC--CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCc
Q 004055 293 PLKLVYDHDIRLGQMPV-----NCSFKALREIVSKRFPSS--KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEP 365 (776)
Q Consensus 293 ~vK~~~~~DiR~~~v~~-----~~~~~~L~~~v~~kF~~~--~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~ 365 (776)
.|||.|++|+|+|.+|. +++|.+|.++|++.|+.. ..|.|+|+|+|||+|||+|++||.+|+...
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~-------- 73 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYF-------- 73 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHH--------
Confidence 48999999999999996 799999999999999977 589999999999999999999999999875
Q ss_pred ccccCCCCCcEEEEEEec
Q 004055 366 EADKSDSVGMLRLHIVDV 383 (776)
Q Consensus 366 ~~~~~~~~g~~rL~v~e~ 383 (776)
+.++..-++||.|+-.
T Consensus 74 --~~~~~~~~lrl~v~~~ 89 (91)
T cd06398 74 --CSGSRLNPLRIDVTVD 89 (91)
T ss_pred --hccCCCceEEEEEEEe
Confidence 2245677899998753
No 27
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=1e-12 Score=127.11 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=105.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
+...|..+++.|+|++|+..|++++.++|.+ ..+|+++|.++..+| +|++|+..|++++.++|.++.+++.+|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g--~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLK--EYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 5678999999999999999999999999997 899999999999999 9999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
|+..+|++++|+..|++++.++|+++.++.+.+.+...+
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888877654
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.47 E-value=6.9e-13 Score=146.43 Aligned_cols=116 Identities=20% Similarity=0.428 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..++.+|+.+|..|+|..|+..|+++|+++|.+ +.+|+++|.||+.+| +|++|+.+|++||.++|.+..+|++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g--~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLG--NFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 4568999999999999999999999999999997 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
+|.+|+.+|+|++|+..|++++.++|+++.+...++.|...+
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887766
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=2e-12 Score=150.21 Aligned_cols=165 Identities=13% Similarity=0.026 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCC
Q 004055 48 ELKEEGNKRFQN---KDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK-------PINYETVIAECTMALQVQP 117 (776)
Q Consensus 48 ~LkeeGn~lfqk---GdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG-------~gdyeeAi~~~~kALeldP 117 (776)
.++..|...+.. +++++|+..|++|++++|++ +.+|.++|.||..++ .+++++|+..+++|++++|
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence 455566544433 46789999999999999998 889999999988653 1258999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHH
Q 004055 118 RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAP 195 (776)
Q Consensus 118 ~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~ 195 (776)
+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...|++++|+..+.+ .++|.++..+..++.+
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 6889988877777778
Q ss_pred HHhCCCccchhHHhhhhcCCC
Q 004055 196 IAGLGPCLPARPVGKKAGAPA 216 (776)
Q Consensus 196 l~~LG~~eeArk~~KKa~~s~ 216 (776)
++..|++++|....++.....
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhc
Confidence 888999999999998876443
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=6.7e-12 Score=123.43 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CCCHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ--PRFVRAL 123 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld--P~n~kAl 123 (776)
+..+...|..++..|++++|+..|.+++.+.|.+ ..++.++|.+++.+| ++++|+..+.+++... |.....+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----GDVLNNYGTFLCQQG--KYEQAMQQFEQAIEDPLYPQPARSL 138 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcc--cHHHHHHHHHHHHhccccccchHHH
Confidence 4567788999999999999999999999999987 788999999999999 9999999999999864 5667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+.+|.++...|++++|...|.+++..+|++..++..++.++...|++++|...+.+ ...|..+..+..++.++...|+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998876 4467788888899999999999
Q ss_pred ccchhHHhhhhc
Q 004055 202 CLPARPVGKKAG 213 (776)
Q Consensus 202 ~eeArk~~KKa~ 213 (776)
.+.|+.+.....
T Consensus 219 ~~~a~~~~~~~~ 230 (234)
T TIGR02521 219 VAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHH
Confidence 999998866643
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.43 E-value=8.1e-12 Score=128.08 Aligned_cols=167 Identities=20% Similarity=0.167 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH--
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR-- 121 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k-- 121 (776)
..+..++..|..++..|+|+.|+..|++++...|.+ +....+++++|.+|+.+| ++++|+..+.++++..|+++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCCchH
Confidence 457799999999999999999999999999999986 233468899999999999 999999999999999998876
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCChHHHHH
Q 004055 122 -ALLRRARAFDAI--------GKYEMAMQDVQVLLGVEPNHRDAL-----------------EIARRLRTALGPRQEAQQ 175 (776)
Q Consensus 122 -Al~~rA~ay~aL--------Gr~deAl~d~~kAL~LdP~N~~al-----------------~~la~ll~~lg~~qeA~~ 175 (776)
+++.+|.++... |+++.|+..|++++..+|++..+. ..++.++...|++.+|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 799999999987 889999999999999999997553 245667788899999999
Q ss_pred HHhh--CC---CCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 176 DLQS--RP---SPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 176 ~l~k--kl---~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.+.. .. .|..+.+++.+|.++..+|++++|..+.+.-.
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876 22 35567899999999999999999999877743
No 32
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.42 E-value=6.6e-13 Score=142.11 Aligned_cols=126 Identities=29% Similarity=0.510 Sum_probs=116.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 34 GVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMAL 113 (776)
Q Consensus 34 ~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL 113 (776)
+.|.-...+++.+.+++++||.||++|.|++|+.+|.++|.++|.+ +.+|.|+|.+|++++ .|..|-.+|+.|+
T Consensus 85 ~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N----pV~~~NRA~AYlk~K--~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 85 PVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN----PVYHINRALAYLKQK--SFAQAEEDCEAAI 158 (536)
T ss_pred CccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC----ccchhhHHHHHHHHH--HHHHHHHhHHHHH
Confidence 3445566778899999999999999999999999999999999988 889999999999999 9999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 114 QVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 114 eldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
.+|..+.+||.+||.+-..||...+|..+|+.+|+|+|++.++...++.+..
T Consensus 159 aLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 159 ALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999888777766544
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.42 E-value=2.2e-12 Score=124.72 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004055 65 ALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 65 Ale~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~ 144 (776)
-...|+++|+++|.. ++++|.++..+| +|++|+..|..++.++|.+..+++.+|.++..+|++++|+..|+
T Consensus 12 ~~~~~~~al~~~p~~-------~~~~g~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 12 PEDILKQLLSVDPET-------VYASGYASWQEG--DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHHcCHHH-------HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346899999999973 567899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 145 VLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 145 kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
+++.++|+++.++..++.++..+|++++|+..+.. ...|.++.++.+++.+...+
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 67899999999998776654
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.42 E-value=7.8e-12 Score=153.52 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=150.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
+...|..+.+.|+++.|+..|.+++++.|.. ..++..++..+..+| ++++|+..|.+++.++|+ ..+++.+|.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~----~~l~~~La~~l~~~G--r~~eAl~~~~~AL~l~P~-~~a~~~LA~ 617 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGD----NALYWWLHAQRYIPG--QPELALNDLTRSLNIAPS-ANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 4567888999999999999999999998876 666777777777778 999999999999999996 999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
++..+|++++|+..|++++.++|+++.++..++.++...|++++|+..+.+ ...|.++.++..+|.++..+|++++|+
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 678999999999999999999999999
Q ss_pred HHhhhhcCCCCCC
Q 004055 207 PVGKKAGAPAGGL 219 (776)
Q Consensus 207 k~~KKa~~s~P~~ 219 (776)
.+++++....|..
T Consensus 698 ~~l~~Al~l~P~~ 710 (987)
T PRK09782 698 HYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999888875
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.41 E-value=6.9e-12 Score=148.72 Aligned_cols=163 Identities=17% Similarity=0.085 Sum_probs=151.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHcCCCCHHHHHHH
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYET----VIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyee----Ai~~~~kALeldP~n~kAl~~r 126 (776)
..|..++..|++++|+..|.+++.+.|.+ +.+++++|.+|..+| ++++ |+..|++++.++|++..++..+
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~----~~~~~~Lg~~l~~~G--~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l 290 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDG----AALRRSLGLAYYQSG--RSREAKLQAAEHWRHALQFNSDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC--CchhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 44778899999999999999999999987 889999999999999 9986 8999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccc
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLP 204 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ee 204 (776)
|.++...|++++|+..+++++.++|+++.++..++.++...|++++|+..+.+ ...|..+..+..++.++..+|++++
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999977 4678887777778999999999999
Q ss_pred hhHHhhhhcCCCCCC
Q 004055 205 ARPVGKKAGAPAGGL 219 (776)
Q Consensus 205 Ark~~KKa~~s~P~~ 219 (776)
|...+.++....|..
T Consensus 371 A~~~l~~al~~~P~~ 385 (656)
T PRK15174 371 AESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHhChhh
Confidence 999999998887775
No 36
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=99.36 E-value=3.1e-12 Score=112.36 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=70.8
Q ss_pred cceeEeeccceeEEeccC--CCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 292 RPLKLVYDHDIRLGQMPV--NCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~~--~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
.+||++|++|++++.+++ +++|.+|...|+++|... +|.|||-|+|||-|||+|+.||+.|+..+
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-~f~lKYlDde~e~v~lssd~eLeE~~rl~------------ 67 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-DIQIKYVDEENEEVSVNSQGEYEEALKSA------------ 67 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-cceeEEEcCCCCEEEEEchhhHHHHHHHH------------
Confidence 479999999999999988 999999999999999988 99999999999999999999999999887
Q ss_pred CCCCCcEEEEEEe
Q 004055 370 SDSVGMLRLHIVD 382 (776)
Q Consensus 370 ~~~~g~~rL~v~e 382 (776)
.+....+++.|.|
T Consensus 68 ~~~~~~l~~~v~~ 80 (81)
T cd06396 68 VRQGNLLQMNVYE 80 (81)
T ss_pred HhCCCEEEEEEec
Confidence 1234678888875
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=3.3e-12 Score=146.13 Aligned_cols=168 Identities=16% Similarity=0.108 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..|-..|-.+.....|+.|+.+|++||.++|+. -.+|+.+|.+|++.+ +|+.|.-.+++|++++|.+...+..
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh----YnAwYGlG~vy~Kqe--k~e~Ae~~fqkA~~INP~nsvi~~~ 528 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH----YNAWYGLGTVYLKQE--KLEFAEFHFQKAVEINPSNSVILCH 528 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh----hHHHHhhhhheeccc--hhhHHHHHHHhhhcCCccchhHHhh
Confidence 5677888899999999999999999999999997 789999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
+|.++.++|+.++|+..|++|+.+||.|+-..+..+.++..++++++|...++. ...|.....++++|.+|..+|..+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 999999999999999999999999999999999999999999999999999976 788999999999999999999999
Q ss_pred chhHHhhhhcCCCCCC
Q 004055 204 PARPVGKKAGAPAGGL 219 (776)
Q Consensus 204 eArk~~KKa~~s~P~~ 219 (776)
-|.+.+-=+...+|..
T Consensus 609 ~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhHHHhcCCCcc
Confidence 9999998888777763
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=3.3e-11 Score=129.64 Aligned_cols=150 Identities=17% Similarity=0.075 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004055 61 DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAM 140 (776)
Q Consensus 61 dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl 140 (776)
..+.++..|.++|...|-.++..+..|+++|.+|..+| ++..|+..|.++++++|+++.+|+.+|.++..+|++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55789999999998666544456899999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 141 QDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 141 ~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
..|+++++++|++..++..++.++...|++++|+..+.+ ...|.++.. .....++...+++++|...+.+..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 677887642 222334456788999999987654
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.4e-11 Score=136.20 Aligned_cols=157 Identities=18% Similarity=0.089 Sum_probs=147.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFD 131 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~ 131 (776)
.||-+--+++++.|+.+|++||+++|.. ..+|..+|-=|+.|+ +-..|+..|++|++++|.+.+|||.+|++|.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~----~~aWTLmGHEyvEmK--Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKY----LSAWTLMGHEYVEMK--NTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcch----hHHHHHhhHHHHHhc--ccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 4777788999999999999999999997 899999999999999 9999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC--CCCCCHHHHHHHHHHHHhCCCccchhHHh
Q 004055 132 AIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR--PSPAALGASAVRGAPIAGLGPCLPARPVG 209 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk--l~P~~~~a~~~lA~~l~~LG~~eeArk~~ 209 (776)
-++-.-=|+-+|++|+.+.|+|+..+..+|.|+.++++.++|+..|... ....+..++..+|..|-.++++.+|-.++
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999874 34445588999999999999999999999
Q ss_pred hhhcC
Q 004055 210 KKAGA 214 (776)
Q Consensus 210 KKa~~ 214 (776)
.|.+.
T Consensus 490 ek~v~ 494 (559)
T KOG1155|consen 490 EKYVE 494 (559)
T ss_pred HHHHH
Confidence 99764
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.34 E-value=4.4e-11 Score=140.58 Aligned_cols=169 Identities=18% Similarity=0.166 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|.+++..+|.. ..+++.+|.+++..| +|++|+..+.+++..+|.+..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 196 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS----LYAKLGLAQLALAEN--RFDEARALIDEVLTADPGNVDAL 196 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhhHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCChHHH
Confidence 456788999999999999999999999999999986 778999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+.+|.++...|++++|+..|++++.++|+++.++..++.++...|++++|...+.. ...|..+..++.++.++...|+
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988876 5567788888888988999999
Q ss_pred ccchhHHhhhhcCCCCC
Q 004055 202 CLPARPVGKKAGAPAGG 218 (776)
Q Consensus 202 ~eeArk~~KKa~~s~P~ 218 (776)
++.|...+.++....|.
T Consensus 277 ~~~A~~~~~~~l~~~~~ 293 (899)
T TIGR02917 277 YEDARETLQDALKSAPE 293 (899)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999998887766555
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.31 E-value=7.9e-11 Score=138.45 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
...+...|..++..|+|++|+..|.+++...|.+ ..+.+++.++..+| ++++|+..+.+++..+|++..+++.
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-----QNAIKLHRALLASG--NTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3456678999999999999999999999999874 56788999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
+|.+|..+|++++|+..|++++..+|+++.++..++.++...|+ .+|+..+.+ ...|.++..+..+|.++..+|+++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999 778888877 567889999999999999999999
Q ss_pred chhHHhhhhcCCCCCC
Q 004055 204 PARPVGKKAGAPAGGL 219 (776)
Q Consensus 204 eArk~~KKa~~s~P~~ 219 (776)
+|..+++++....|..
T Consensus 855 ~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 855 RALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999998776654
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.9e-12 Score=140.37 Aligned_cols=113 Identities=27% Similarity=0.436 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..++++||.+|..|+|+.|+.+|+.+|.++|.+ ..+|.|+..||..+| +|.+|+.+..+.++++|.++++|.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n----hvlySnrsaa~a~~~--~~~~al~da~k~~~l~p~w~kgy~r 75 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN----HVLYSNRSAAYASLG--SYEKALKDATKTRRLNPDWAKGYSR 75 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc----cchhcchHHHHHHHh--hHHHHHHHHHHHHhcCCchhhHHHH
Confidence 5689999999999999999999999999999998 689999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
+|-++..+|+|++|+..|..+|+.+|+|..+...+..++
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999998887
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.30 E-value=1.2e-10 Score=146.36 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPD----------RAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d----------~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
+..+...|..+++.|++++|+..|+++++++|.+... ...+...+|.+++..| ++++|+..|.+++.+
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g--~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN--NLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh
Confidence 3456778888888888888888888888888875321 0112345577788888 999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-------------------------------
Q 004055 116 QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR------------------------------- 164 (776)
Q Consensus 116 dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll------------------------------- 164 (776)
+|.+..+++.+|.+|...|++++|+..|+++++++|++..++..++.++
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988776555443
Q ss_pred -----------HHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 165 -----------TALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 165 -----------~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
...|++++|+..+.+ ...|.++.+++.++.++..+|++++|...+++.....|.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 345777788877766 577888888888899999999999999988887655554
No 44
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.29 E-value=1.5e-10 Score=137.41 Aligned_cols=168 Identities=16% Similarity=0.018 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..+...|+++.|+..|++++.++|++ +.++.++|.++..+| ++++|+..|.+++.++|.+..++..
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~----~~a~~~la~~l~~~g--~~~~Ai~~l~~Al~l~P~~~~a~~~ 149 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ----PEDVLLVASVLLKSK--QYATVADLAEQAWLAFSGNSQIFAL 149 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3445555555555555555555555555555554 445555555555555 5555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----------------------------------HHHHHHHHcCChH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALE----------------------------------IARRLRTALGPRQ 171 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~----------------------------------~la~ll~~lg~~q 171 (776)
+|.++...|++++|+..+++++.++|+++.++. .++.++...|+++
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 555555555555555555555555554443331 1233444556666
Q ss_pred HHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccc----hhHHhhhhcCCCCCC
Q 004055 172 EAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLP----ARPVGKKAGAPAGGL 219 (776)
Q Consensus 172 eA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ee----Ark~~KKa~~s~P~~ 219 (776)
+|+..+.+ ...|.++..+..+|.++..+|++++ |...++++....|..
T Consensus 230 eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~ 283 (656)
T PRK15174 230 EAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN 283 (656)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC
Confidence 66666654 4456666666666666666666654 566666666555554
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=9.1e-11 Score=144.24 Aligned_cols=161 Identities=11% Similarity=-0.016 Sum_probs=150.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFD 131 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~ 131 (776)
.+..++..|++++|+..|+++++++|+ +.+|+++|.++.++| ++++|+..+.+++.++|+++.+++.+|.++.
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-----~~a~~~LA~~l~~lG--~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-----ANAYVARATIYRQRH--NVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555669999999999999999995 678999999999999 9999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHh
Q 004055 132 AIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVG 209 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~ 209 (776)
..|++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+ .+.|+........|.++....++..|....
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 688999999999999999999999999988
Q ss_pred hhhcCCCCCC
Q 004055 210 KKAGAPAGGL 219 (776)
Q Consensus 210 KKa~~s~P~~ 219 (776)
.++....|..
T Consensus 735 ~r~~~~~~~~ 744 (987)
T PRK09782 735 GRRWTFSFDS 744 (987)
T ss_pred HHHhhcCccc
Confidence 8887777765
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.29 E-value=1.5e-10 Score=145.39 Aligned_cols=167 Identities=20% Similarity=0.115 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH---
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL--- 123 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl--- 123 (776)
..+...|..+...|++++|+..|+++++++|++ +.+++++|.+|..+| ++++|+..+++++.++|.++.++
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G--~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAG--QRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 346678999999999999999999999999997 889999999999999 99999999999999888776543
Q ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q 004055 124 -----------------------------------------------------------------------LRRARAFDA 132 (776)
Q Consensus 124 -----------------------------------------------------------------------~~rA~ay~a 132 (776)
+.+|.+|..
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 346667778
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhh
Q 004055 133 IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGK 210 (776)
Q Consensus 133 LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~K 210 (776)
.|++++|+..|++++.++|+|+.++..++.++...|++++|+..+.. ...|.++..+..+|.++..+|++++|...+.
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998877 4568888888889999999999999999999
Q ss_pred hhcCCCCCC
Q 004055 211 KAGAPAGGL 219 (776)
Q Consensus 211 Ka~~s~P~~ 219 (776)
+.....|.+
T Consensus 696 ~al~~~~~~ 704 (1157)
T PRK11447 696 RLIPQAKSQ 704 (1157)
T ss_pred HHhhhCccC
Confidence 987655443
No 47
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.2e-11 Score=135.36 Aligned_cols=122 Identities=30% Similarity=0.480 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kA 122 (776)
.+.-..+++.||.+|+.|.|..|.+.|+.||.++|.+....+.+|.|+|.+...+| +..+|+.+|+.|+.+||.+.++
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg--rl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG--RLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC--CchhhhhhhhhhhhcCHHHHHH
Confidence 35677899999999999999999999999999999987778999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
|.++|.|+..+++|++|+++|++++++..+ ......+..+...+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence 999999999999999999999999999877 55555555554443
No 48
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=1.1e-10 Score=109.29 Aligned_cols=114 Identities=19% Similarity=0.302 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|+|.+|+..|++++.++|.+ ..++.++|.|+..+| ++++|+..+++++..+|.++..++.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLK--EYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCChHHHHH
Confidence 5668899999999999999999999999999987 889999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
+|.+|...|+++.|+..|+++++++|++.........+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999887666655544
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.27 E-value=2.3e-10 Score=125.08 Aligned_cols=167 Identities=18% Similarity=0.118 Sum_probs=92.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP-DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~-d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
+...+..+...|+|++|+..|.+++...|.... ....++.++|.++...| ++++|+..|.++++.+|.+..+++.+|
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la 221 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG--DLDAARALLKKALAADPQCVRASILLG 221 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhHCcCCHHHHHHHH
Confidence 333444444455555555555554444443210 11234455555666665 666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccc
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPNH-RDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLP 204 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~N-~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ee 204 (776)
.+|...|++++|+..|++++..+|.+ ..++..++.++...|+.++|...+.+ ...|+... ...++.++...|++++
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHH
Confidence 66666666666666666666666654 34445556666666666666665554 33444432 2555666666666666
Q ss_pred hhHHhhhhcCCCCC
Q 004055 205 ARPVGKKAGAPAGG 218 (776)
Q Consensus 205 Ark~~KKa~~s~P~ 218 (776)
|...++++....|.
T Consensus 301 A~~~l~~~l~~~P~ 314 (389)
T PRK11788 301 AQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHHHhCcC
Confidence 66666665554444
No 50
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.26 E-value=2.6e-10 Score=124.73 Aligned_cols=163 Identities=15% Similarity=0.026 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH-----H
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV-----R 121 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~-----k 121 (776)
..+...|..++..|+|+.|+..|.++++..|.. ..++..++.++...| ++++|+..+.+++..+|.+. .
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFA----EGALQQLLEIYQQEK--DWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch----HHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344555666666666666666666666655543 455566666666665 66666666666666555432 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCC-HHHHHHHHHHHHh
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAA-LGASAVRGAPIAG 198 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~-~~a~~~lA~~l~~ 198 (776)
.++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++|...+.+ ...|.+ ...+..++.++..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666666666666666665554 223433 2334455566666
Q ss_pred CCCccchhHHhhhhcCC
Q 004055 199 LGPCLPARPVGKKAGAP 215 (776)
Q Consensus 199 LG~~eeArk~~KKa~~s 215 (776)
+|++++|...+++....
T Consensus 262 ~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE 278 (389)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666655433
No 51
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=1.7e-10 Score=113.55 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.-+.++..|..+++.|+|++|...|+....++|.+ +..|+++|.|+..+| +|.+|+..|.+|+.++|+++.++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~----~~y~~gLG~~~Q~~g--~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS----FDYWFRLGECCQAQK--HWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcCCCCchHH
Confidence 456789999999999999999999999999999998 999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRD 155 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~ 155 (776)
++.|.|++.+|+.+.|...|+.++.+.-.++.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999999999999998744443
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=3.2e-10 Score=115.67 Aligned_cols=115 Identities=13% Similarity=0.121 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--
Q 004055 59 NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF-DAIGK-- 135 (776)
Q Consensus 59 kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay-~aLGr-- 135 (776)
.++.++++..|+++|+.+|++ +..|+++|.+|+.+| +|+.|+..|.+|+.++|++..+++.+|.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~----~~~w~~Lg~~~~~~g--~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN----SEQWALLGEYYLWRN--DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence 566788888888888888887 788888888888888 888888888888888888888888888875 67677
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 136 YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 136 ~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+++|...++++++++|+++.++..++.++...|++++|+..+.+
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 48888888888888888888888888888888888888888876
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=2.8e-10 Score=122.32 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.++...+.|+.++.+|.|..|+..|-.|+..+|++ ..+++.+|..|+.|| .-.-|+.++.++|++.|++.-|..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~----Y~aifrRaT~yLAmG--ksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN----YQAIFRRATVYLAMG--KSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh----HHHHHHHHHHHhhhc--CCccchhhHHHHHhcCccHHHHHH
Confidence 47789999999999999999999999999999998 889999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHH----------HH--HcCChHHHHHHHhh--CCCCCCHH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA---LEIARRL----------RT--ALGPRQEAQQDLQS--RPSPAALG 187 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a---l~~la~l----------l~--~lg~~qeA~~~l~k--kl~P~~~~ 187 (776)
.||.++++.|.++.|..+|+++|.-+|++-.. +..++.+ .. .-|+...++..+.. ...|+++.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 99999999999999999999999999966433 3222221 11 23678888887776 57899999
Q ss_pred HHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 188 ASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 188 a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.+..++.||...|+...|..-.+.+...+..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence 9999999999999999999888887644443
No 54
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=5e-10 Score=104.78 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=109.1
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 67 EQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 67 e~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
+.|++++.++|.+ ...++.+|.++...| ++++|+..+.+++..+|.++.+++.+|.++..+|+++.|+..|+++
T Consensus 4 ~~~~~~l~~~p~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGLDSEQ----LEQIYALAYNLYQQG--RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcCChhh----HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999987 788999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHH
Q 004055 147 LGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASA 190 (776)
Q Consensus 147 L~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~ 190 (776)
+.++|.++..+..++.++...|+++.|...+.. ...|.+.....
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999999999999999999976 56676665443
No 55
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=1.2e-09 Score=119.50 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=130.7
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGK 135 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr 135 (776)
+...+.+++|+..+.++|.++|.+ ..++..++.|+..++ .++++++..++++++.+|++..+|+.|+.++..+|+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~----ytaW~~R~~iL~~L~-~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN----YTVWHFRRLCLEALD-ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 556778889999999999999887 788888888888886 247889999999999999998899999888888887
Q ss_pred H--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC---CCc----cc
Q 004055 136 Y--EMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL---GPC----LP 204 (776)
Q Consensus 136 ~--deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L---G~~----ee 204 (776)
. +.++..+.++++++|.|..++...+.++..++.+++++..+.+ ..+|.+..++..++.++..+ |.+ +.
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 4 6788888889999999999999888888888888888888877 56788888888888887766 333 35
Q ss_pred hhHHhhhhcCCCCCCcc
Q 004055 205 ARPVGKKAGAPAGGLLV 221 (776)
Q Consensus 205 Ark~~KKa~~s~P~~~v 221 (776)
+..+.+++....|....
T Consensus 202 el~y~~~aI~~~P~N~S 218 (320)
T PLN02789 202 ELKYTIDAILANPRNES 218 (320)
T ss_pred HHHHHHHHHHhCCCCcC
Confidence 66666777777776543
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.15 E-value=2.2e-10 Score=121.15 Aligned_cols=164 Identities=20% Similarity=0.174 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
...+......++..++++++...+.++....+. +..+.+++.+|.++.+.| ++++|+..+.+||+++|++..++..
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLG--DPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344556667788999999999999998865421 123788999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
++.++...|+++++...+.......|.|+.++..++.++..+|++++|+..+.+ +..|.++.....+|.++...|+.+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999998888899999999999999999999999999987 567999999999999999999999
Q ss_pred chhHHhhhhc
Q 004055 204 PARPVGKKAG 213 (776)
Q Consensus 204 eArk~~KKa~ 213 (776)
+|..+.+++.
T Consensus 266 ~A~~~~~~~~ 275 (280)
T PF13429_consen 266 EALRLRRQAL 275 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999887754
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.1e-09 Score=121.50 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
...+-..|..+...++...|+..|++|++++|.+ ..+|+.+|++|--|+ ..--|+-++++|+.+.|+++..|..
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D----yRAWYGLGQaYeim~--Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD----YRAWYGLGQAYEIMK--MHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh----HHHHhhhhHHHHHhc--chHHHHHHHHHHHhcCCCchHHHHH
Confidence 4467788999999999999999999999999997 889999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh---------CCCCCCHHHHHHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS---------RPSPAALGASAVRGAPI 196 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k---------kl~P~~~~a~~~lA~~l 196 (776)
+|.||.++++.++|+..|.+++...-.+..++..++.++..+++..+|...+.+ ...|.-..+...++.-+
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876 14566677888899999
Q ss_pred HhCCCccchhHHhhhhcCC
Q 004055 197 AGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~~s 215 (776)
.+.+++++|.-+.-+....
T Consensus 518 ~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HhhcchHHHHHHHHHHhcC
Confidence 9999999999987776544
No 58
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.7e-10 Score=118.06 Aligned_cols=121 Identities=26% Similarity=0.378 Sum_probs=108.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCC------CChHHHHHHHHHHHHHc
Q 004055 32 NGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLT--------PKTH------PDRAVFHSNRAACLMQM 97 (776)
Q Consensus 32 ~~~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLd--------P~~~------~d~A~ay~n~A~cy~~L 97 (776)
-..+.++..+..+....+.++||.+|+.|+|.+|...|..||-.. |..+ .....++.|.++|++..
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~ 243 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK 243 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH
Confidence 446778888899999999999999999999999999999998754 2221 12457899999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004055 98 KPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 98 G~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~ 154 (776)
| +|.+++..|+..|..+|+|.+|||+||.++...-+.++|.++|.++|+++|.-.
T Consensus 244 ~--e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 244 E--EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred H--HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 9 999999999999999999999999999999999999999999999999999754
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=1.9e-09 Score=110.02 Aligned_cols=154 Identities=8% Similarity=0.016 Sum_probs=129.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
...-+-.||..|+|.......++ + .+|.. -|...+ +.++++..+.++|..+|++..+|+.+|.
T Consensus 19 ~~~~~~~Y~~~g~~~~v~~~~~~-~-~~~~~-------------~~~~~~--~~~~~i~~l~~~L~~~P~~~~~w~~Lg~ 81 (198)
T PRK10370 19 VFLCVGSYLLSPKWQAVRAEYQR-L-ADPLH-------------QFASQQ--TPEAQLQALQDKIRANPQNSEQWALLGE 81 (198)
T ss_pred HHHHHHHHHHcchHHHHHHHHHH-H-hCccc-------------cccCch--hHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34456778999998885444422 2 12221 000144 8899999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR-TALGP--RQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll-~~lg~--~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
+|..+|+++.|+..|+++++++|+|+.++..++.++ ...|+ ..+|...+.+ +.+|.++.++..+|.++..+|+++
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999975 67777 5899999987 788999999999999999999999
Q ss_pred chhHHhhhhcCCCCCC
Q 004055 204 PARPVGKKAGAPAGGL 219 (776)
Q Consensus 204 eArk~~KKa~~s~P~~ 219 (776)
+|..++++.....|+.
T Consensus 162 ~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 162 QAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999998887774
No 60
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=1.6e-09 Score=118.47 Aligned_cols=139 Identities=12% Similarity=0.041 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 45 RAHELKEEGNKRFQNK-DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkG-dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
....+..+|.++...| ++.+|+..+.++|..+|++ ..++++++.++..++...+.+++..+.++|+.+|+|..||
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn----yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW 145 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN----YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW 145 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc----hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence 4556788899999998 6899999999999999998 8899999999999982224789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCh----HHHHHHHhh--CCCCCCHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL---GPR----QEAQQDLQS--RPSPAALG 187 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l---g~~----qeA~~~l~k--kl~P~~~~ 187 (776)
..|+.++..+|++++|+.+|.++|++||.|..++...+.++..+ +.. ++++....+ ...|.+..
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S 218 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES 218 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999988776 333 234444433 45666643
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=7.5e-10 Score=114.25 Aligned_cols=135 Identities=21% Similarity=0.186 Sum_probs=124.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 82 DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 82 d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
..+.++.-+|.-|+..| ++..|...+++||+.||++..++..+|.+|..+|+.+.|.+.|++|++++|+|-+++.+.+
T Consensus 33 ~aa~arlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 33 EAAKARLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 35678899999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHhhC-CC---CCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 162 RLRTALGPRQEAQQDLQSR-PS---PAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 162 ~ll~~lg~~qeA~~~l~kk-l~---P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.-+...|++++|...|.+. .. |.....+-++|.|-...|+.+.|+.+++++....|.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 9999999999999999873 23 455678899999999999999999999998866665
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.11 E-value=1.4e-09 Score=129.53 Aligned_cols=129 Identities=13% Similarity=0.107 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
+.++.++|.+..++| .|++|...+..++++.|++..|+..++.++.+++++++|+..++++|..+|+|+.++..++.+
T Consensus 86 ~~~~~~La~i~~~~g--~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAH--RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 566666666666666 666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 164 RTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 164 l~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
+..+|++++|...|.+ ...|+++.++..+|.++..+|+.++|...+.++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655 34555666666666666666666666666666543
No 63
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=2.2e-09 Score=97.00 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kA 122 (776)
++.++..|..++..|+|++|+..|.+++...|++ +..+.+++.+|.+++..| +|+.|+..|..++..+|++ ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQG--KYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHCCCCCcccHH
Confidence 3578899999999999999999999999999874 233678999999999999 9999999999999999885 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIA 160 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~l 160 (776)
++.+|.++..+|++++|+..+++++...|++..+....
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999999999999999999999999999998765543
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=5.6e-10 Score=126.60 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHH
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPI 196 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l 196 (776)
+++.+..+|.+|+-.|+|+.|+.+|+.||..+|+|..+|..+|..+.--.+..+|+..|.+ .+.|...++++++|.++
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 4667888888888899999999999999999999999999999999999999999999987 68899999999999999
Q ss_pred HhCCCccchhHHhhhhcCCCCC
Q 004055 197 AGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~~s~P~ 218 (776)
..+|.|.+|-+++..+....+.
T Consensus 509 mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999988755444
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.4e-09 Score=128.86 Aligned_cols=172 Identities=18% Similarity=0.138 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+-.|..++..+|.+|+|.+|+.+|.++|.++|... +.....+|.|+.+|+ +-+.|+..|.+|+++||.+..++.
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~---aD~rIgig~Cf~kl~--~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK---ADVRIGIGHCFWKLG--MSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC---CCccchhhhHHHhcc--chhhHHHHHHHHHhcChhhHHHHH
Confidence 456789999999999999999999999999999885 455788999999999 999999999999999999999999
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh-----CCCCCCHHHHHHHHHHH
Q 004055 125 RRARAFDAI---GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS-----RPSPAALGASAVRGAPI 196 (776)
Q Consensus 125 ~rA~ay~aL---Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k-----kl~P~~~~a~~~lA~~l 196 (776)
.+|.+-..- ..+..++..+.++...+|+||.++..++..+...|+++.+...... ...+--++.++.+|+++
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999876554 4588899999999999999999999999999999999998876654 23345567789999999
Q ss_pred HhCCCccchhHHhhhhcCCCCCCcc
Q 004055 197 AGLGPCLPARPVGKKAGAPAGGLLV 221 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~~s~P~~~v 221 (776)
..+|+|+.|.+++-.+....+...+
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred HhhccHHHHHHHHHHHHccCCCCcc
Confidence 9999999999999998866666533
No 66
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.08 E-value=4.4e-09 Score=127.06 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=146.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
-.-..++...|++++|+..|.+++.++|.. +.++.++|.++...| ++.+|+..|+++|.++|.++.+++.+|.+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~----a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLP----ARGYAAVAVAYRNLK--QWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344557788999999999999999988886 888999999999999 99999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhH
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk 207 (776)
+...|++++|+..+++++..+|+++. +..++.++...|++.+|+..+.+ ...|.+..++..++.++...+..++|..
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999 99999999999999999999987 6789999999999999999999999998
Q ss_pred Hhhhhc
Q 004055 208 VGKKAG 213 (776)
Q Consensus 208 ~~KKa~ 213 (776)
.+.+..
T Consensus 172 ~l~~~~ 177 (765)
T PRK10049 172 AIDDAN 177 (765)
T ss_pred HHHhCC
Confidence 888755
No 67
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.06 E-value=3.8e-09 Score=127.59 Aligned_cols=169 Identities=9% Similarity=-0.024 Sum_probs=148.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC-------------
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR------------- 118 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~------------- 118 (776)
.|..++..|++++|+..|++++...|.........+..++..++..| ++++|+..++.++..+|.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g--~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE--NYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 47788999999999999999998887642222355677777888888 999999999999998873
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHH
Q 004055 119 --FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGA 194 (776)
Q Consensus 119 --n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~ 194 (776)
...+++.+|.++...|++++|+..+++++...|.|+.++..++.++...|++++|+..+.+ ...|++...++.++.
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 2467889999999999999999999999999999999999999999999999999999987 678999999999999
Q ss_pred HHHhCCCccchhHHhhhhcCCCCCCccC
Q 004055 195 PIAGLGPCLPARPVGKKAGAPAGGLLVS 222 (776)
Q Consensus 195 ~l~~LG~~eeArk~~KKa~~s~P~~~v~ 222 (776)
++..+|++++|....++.....|++..+
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999998888887443
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.05 E-value=5.7e-09 Score=124.42 Aligned_cols=128 Identities=16% Similarity=0.045 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..++..|....+.|.|++|...|+.++++.|++ ..++.++|.++.+++ .+++|+..|+++|..+|++..+++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----~~a~~~~a~~L~~~~--~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----SEAFILMLRGVKRQQ--GIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhc--cHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 5667889999999999999999999999999997 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+|.++.++|++++|+..|++++..+|+++.++..++.++..+|+.++|...|.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987
No 69
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.3e-10 Score=122.68 Aligned_cols=172 Identities=24% Similarity=0.264 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
....|...+++|+.+++..+|..|+..|..||.+.|++ +..|.|+|.++|.++ +|++|..+++..++++|.+++
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~----a~yy~nRAa~~m~~~--~~~~a~~dar~~~r~kd~~~k 118 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN----ASYYSNRAATLMMLG--RFEEALGDARQSVRLKDGFSK 118 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc----hhhhchhHHHHHHHH--hHhhcccchhhheecCCCccc
Confidence 45789999999999999999999999999999999998 899999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH------------hh------CCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CC
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLL------------GV------EPNHRDALEIARRLRTALGPRQEAQQDLQS--RP 181 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL------------~L------dP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl 181 (776)
++.+.++|+.++++.-+|.+.|+-.- .+ .|....+....+.|+.-++++.+|...-.. ++
T Consensus 119 ~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 119 GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 99999999999999999886665211 01 133345556677888889999988875533 78
Q ss_pred CCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 182 SPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 182 ~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
++.+..+++++|.|++.+++.+.|..++.+++...|..
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh 236 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH 236 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhhhhccChhh
Confidence 99999999999999999999999999999999888874
No 70
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.01 E-value=3.7e-10 Score=126.25 Aligned_cols=118 Identities=25% Similarity=0.503 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
+|..++.+++.+|..++|+.|+..|.+||+++|++ +.++.|+++++++.+ +|..|+.++.+|++++|.+.++|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc----a~~~anRa~a~lK~e--~~~~Al~Da~kaie~dP~~~K~Y~ 76 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC----AIYFANRALAHLKVE--SFGGALHDALKAIELDPTYIKAYV 76 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc----eeeechhhhhheeec--hhhhHHHHHHhhhhcCchhhheee
Confidence 57889999999999999999999999999999998 889999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG 168 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg 168 (776)
++|.+..+++++.+|+.+|++...+.|+++.+...+..|.....
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877653
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.00 E-value=5.6e-09 Score=86.24 Aligned_cols=99 Identities=32% Similarity=0.478 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.+...|..++..|+|..|+..|.++++..|.. ..+++.+|.|+...+ +++.|+..+..++...|.+..+++.+|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLG--KYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 46788999999999999999999999999886 678899999999998 999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
.++...|+++.|...+.+++.++|.
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999988874
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=1.5e-08 Score=109.63 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HcCCCCHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMAL----QVQPRFVRA 122 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL----eldP~n~kA 122 (776)
+.....|..++..|++++|+..|++++..+|.+ ..++.. +.++..++ ++..+...+.+++ ..+|....+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~----~~a~~~-~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 116 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRD----LLALKL-HLGAFGLG--DFSGMRDHVARVLPLWAPENPDYWYL 116 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHH-hHHHHHhc--ccccCchhHHHHHhccCcCCCCcHHH
Confidence 446678999999999999999999999999987 555554 66666665 4444444444444 567888889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC--CCCCC----HHHHHHHHHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR--PSPAA----LGASAVRGAPI 196 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk--l~P~~----~~a~~~lA~~l 196 (776)
+..+|.++...|++++|+..+++++.++|++..++..++.++...|++++|+..+.+. ..|.. ...+..++.++
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998872 22322 23466789999
Q ss_pred HhCCCccchhHHhhhhc
Q 004055 197 AGLGPCLPARPVGKKAG 213 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~ 213 (776)
..+|++++|...+.+..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999874
No 73
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=1.2e-08 Score=100.93 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|.+++.+.|+. ++.+.++.++|.+|..+| +|++|+..+.+++..+|.+..++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNG--EHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcccHHHH
Confidence 567789999999999999999999999999998763 234678999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q 004055 124 LRRARAFDAIGK--------------YEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 124 ~~rA~ay~aLGr--------------~deAl~d~~kAL~LdP~N 153 (776)
..+|.+|..+|+ +..|+..+++++.++|+|
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999988 567777777777778776
No 74
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=98.99 E-value=1.3e-09 Score=94.78 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=60.1
Q ss_pred ceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCC-ceEEEEecCCCCeeeecChHHHHHHHHhc
Q 004055 293 PLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSK-SVLIKYKDNDGDLVTITCTAELRLAESAS 357 (776)
Q Consensus 293 ~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~-~~~iKYkDeDGDlVTi~s~dDL~~A~~~~ 357 (776)
+.|+.|++|+|+|..|...+|..|+++|..-|...- .|.|+|-|+|||.|||+|++||+-++...
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~ 67 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLS 67 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhc
Confidence 579999999999999999999999999999888652 59999999999999999999999999754
No 75
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.99 E-value=1.3e-08 Score=106.62 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=138.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
....+.++..|+-+.++....+++...|.+ ..++.-.|..+...| +|..|+..+++|..++|+++++|..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d----~~ll~~~gk~~~~~g--~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKD----RELLAAQGKNQIRNG--NFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCccc----HHHHHHHHHHHHHhc--chHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 456677788888888888888877777775 556666888888998 99999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh-C-CCCCCHHHHHHHHHHHHhCCCccchhH
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS-R-PSPAALGASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k-k-l~P~~~~a~~~lA~~l~~LG~~eeArk 207 (776)
|.++|++++|...|.+++++.|+++.+..+++..+...|+++.|...+.. . ..+.+.....+++.+....|++.+|+.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999999999999999999999999999999999999998876 3 445688999999999999999999987
Q ss_pred Hhhh
Q 004055 208 VGKK 211 (776)
Q Consensus 208 ~~KK 211 (776)
...+
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 7555
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.98 E-value=2.9e-08 Score=117.20 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
..+.+..++|.+|-+|++++|.+.+..+|+.+|.+ +.+|+.+|.||.++| +..+|+..+-.|-.++|++..-|.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~----~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL~p~d~e~W~ 211 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN----PIAYYTLGEIYEQRG--DIEKALNFWLLAAHLNPKDYELWK 211 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc----hhhHHHHHHHHHHcc--cHHHHHHHHHHHHhcCCCChHHHH
Confidence 37899999999999999999999999999999998 889999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCC-CCHH----HHHHHHHHHH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSP-AALG----ASAVRGAPIA 197 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P-~~~~----a~~~lA~~l~ 197 (776)
+++.....+|++..|.-+|.+|++++|.|.........++.++|++..|..-+.+ ...| .+.. .....+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877 3444 2211 1223366666
Q ss_pred hCCCccchhHHhhhhcC
Q 004055 198 GLGPCLPARPVGKKAGA 214 (776)
Q Consensus 198 ~LG~~eeArk~~KKa~~ 214 (776)
..++.+.|.+.+..+..
T Consensus 292 ~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 292 THNERERAAKALEGALS 308 (895)
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 77777777777777654
No 77
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=5e-09 Score=111.64 Aligned_cols=117 Identities=22% Similarity=0.261 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
.-+-+-|.=+|+-+ +|.+|+.-|.+||+++|+|+..|.+||-+|.+||.|+.|+.+|+.+|.+||+...+|-.++.++
T Consensus 82 E~LK~eGN~~m~~~--~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNK--DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34556677788888 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 165 TALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 165 ~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
..+|++.+|+..|.+ .++|.+..++-.+.++-..++...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999988 688999988888776555544433
No 78
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.97 E-value=1.9e-08 Score=122.04 Aligned_cols=167 Identities=13% Similarity=0.013 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
++..++.+...++.|+|..|+..|.++++.+|.++ +.++ .++.++..+| ++++|+..|++++.-+|.+..++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~---~av~-dll~l~~~~G--~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS---GQVD-DWLQIAGWAG--RDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch---hhHH-HHHHHHHHcC--CcHHHHHHHHHhccCCCCCHHHHHH
Confidence 55889999999999999999999999999999972 2233 7788888888 9999999999999545556666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
+|.+|...|+++.|+..|+++++.+|+|+.++..++.++...++.++|+..+.+ ...|..... ..++.++..++++.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 688999999999999999999999999999999998999999999999999877 456764444 55566666678887
Q ss_pred chhHHhhhhcCCCCCC
Q 004055 204 PARPVGKKAGAPAGGL 219 (776)
Q Consensus 204 eArk~~KKa~~s~P~~ 219 (776)
+|...+++.....|..
T Consensus 187 ~AL~~~ekll~~~P~n 202 (822)
T PRK14574 187 DALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 7999999988877774
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=2.2e-08 Score=102.79 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCCCCH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM------KPINYETVIAECTMALQVQPRFV 120 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L------G~gdyeeAi~~~~kALeldP~n~ 120 (776)
..+...|..++..|+|+.|+..|+++++..|++ +....+++.+|.|+..+ .+|+++.|+..+++++..+|++.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 467889999999999999999999999999975 34456899999999987 11289999999999999999986
Q ss_pred HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 121 RAL-----------------LRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 121 kAl-----------------~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.++ +.+|.+|+..|++..|+..|++++...|++ +.++..++.++..+|++.+|...+..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 442 467889999999999999999999997765 58999999999999999999987754
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.96 E-value=2.9e-09 Score=112.66 Aligned_cols=129 Identities=22% Similarity=0.170 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+..+...|..+.+.|+++.|+..|+++|+++|++ ..+...++.++..+| +++++...+.......|.++..+.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~----~~~~~~l~~~li~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 218 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDD----PDARNALAWLLIDMG--DYDEAREALKRLLKAAPDDPDLWD 218 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHCcCHHHHHH
Confidence 35568889999999999999999999999999998 888899999999888 999999999888888899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.+|.+|..+|++++|+..|++++..+|+|+.++..++.++...|+.++|...+.+
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999886654
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.95 E-value=2.5e-09 Score=89.41 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG-KYEMAMQDVQVLLGVEP 151 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG-r~deAl~d~~kAL~LdP 151 (776)
+..|+++|.+++.+| +|++|+..|.++++++|+++.+++.+|.||..+| ++++|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQG--DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 677888888888888 8888888888888888888888888888888888 68888888888888887
No 82
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-09 Score=111.95 Aligned_cols=101 Identities=32% Similarity=0.512 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+++.|+.+|..+.|..|+..|.+||.++|.. +.+|.|+|.||+++. +++.+..+|.+|++++|+..+++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~----~~Y~tnralchlk~~--~~~~v~~dcrralql~~N~vk~h 81 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV----ASYYTNRALCHLKLK--HWEPVEEDCRRALQLDPNLVKAH 81 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc----chhhhhHHHHHHHhh--hhhhhhhhHHHHHhcChHHHHHH
Confidence 458899999999999999999999999999999997 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
|.+|.++.....|++|+..+++++.+-
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999996653
No 83
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.93 E-value=1.3e-08 Score=112.80 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
+...|..++..| +|+.|+..|.+||+++|.+..+|+.+|.+|..+|++++|+.++++++.++|+++.++..++.++..
T Consensus 5 l~~~a~~a~~~~--~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDD--DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 556788888988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 167 LGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 167 lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
+|++.+|+..|.+ .+.|.+..+...++.|...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999987 68899999998888776665
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.93 E-value=2.9e-08 Score=97.59 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|.+++.+.|+. .+.+.+++++|.+|..+| ++++|+..|.+|+.++|.+..++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNG--EHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCcHHHH
Confidence 578889999999999999999999999999997752 334678999999999999 99999999999999999999999
Q ss_pred HHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q 004055 124 LRRARAFD-------AIGKYE-------MAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 124 ~~rA~ay~-------aLGr~d-------eAl~d~~kAL~LdP~N~ 154 (776)
..+|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999988 777766 55666666778888764
No 85
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=98.93 E-value=4.7e-09 Score=91.26 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=67.0
Q ss_pred ceeEeeccceeEEeccCC--CCHHHHHHHHHhHCCCC-CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 293 PLKLVYDHDIRLGQMPVN--CSFKALREIVSKRFPSS-KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 293 ~vK~~~~~DiR~~~v~~~--~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
.||..|+.|.|++.++.+ .+|.+|...|...+... -+|.|+|-|++|||++|++||.+..|++++
T Consensus 2 eVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa------------ 69 (80)
T cd06403 2 EVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLPINNDDNFLKALSSA------------ 69 (80)
T ss_pred ceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEecccCcHHHHHHHHcC------------
Confidence 478999999999999887 89999999999988633 579999999999999999999999999876
Q ss_pred CCCCCcEEEEEE
Q 004055 370 SDSVGMLRLHIV 381 (776)
Q Consensus 370 ~~~~g~~rL~v~ 381 (776)
.+.+||+|+
T Consensus 70 ---~plLRl~iq 78 (80)
T cd06403 70 ---NPLLRIFIQ 78 (80)
T ss_pred ---CCceEEEEE
Confidence 577999997
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=8.5e-09 Score=113.83 Aligned_cols=168 Identities=18% Similarity=0.079 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+..+.++||..|..|+|+.|+++|..||.-+... ..+++|+|..+-.+| ++++|+..|-+.-.+--++..+++
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc----~ealfniglt~e~~~--~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC----TEALFNIGLTAEALG--NLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH----HHHHHHhcccHHHhc--CHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35678899999999999999999999999988887 789999999999999 999999999887665567999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCc
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPC 202 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ 202 (776)
.+|.+|..+.+...|++.+.++..+-|++|.++-.++.++-+-|+..+|...+.. +.-|.+....-+++..|....=.
T Consensus 563 qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999998888875543 66688888777788778878778
Q ss_pred cchhHHhhhhcCCCCC
Q 004055 203 LPARPVGKKAGAPAGG 218 (776)
Q Consensus 203 eeArk~~KKa~~s~P~ 218 (776)
+.|..++.++.-..|.
T Consensus 643 ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPN 658 (840)
T ss_pred HHHHHHHHHHHhcCcc
Confidence 8888888886544443
No 87
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.88 E-value=6.2e-09 Score=87.05 Aligned_cols=67 Identities=30% Similarity=0.463 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCC
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPIN-YETVIAECTMALQVQP 117 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gd-yeeAi~~~~kALeldP 117 (776)
.|..+...|..++..|+|++|+..|.++|+++|++ +.+|+++|.||+.+| + +.+|+.+++++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~----~~~~~~~g~~~~~~~--~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN----AEAYYNLGLAYMKLG--KDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHHTT--THHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHcCc
Confidence 47899999999999999999999999999999997 899999999999997 5 9999999999999998
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=7.2e-08 Score=101.21 Aligned_cols=133 Identities=15% Similarity=0.068 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.+..+|..++..|+|..|+..+.++..+.|++ ..+|..+|.||.++| +++.|...|.+|+++.|+.+.++.++|
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d----~~~~~~lgaaldq~G--r~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD----WEAWNLLGAALDQLG--RFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCC----hhhhhHHHHHHHHcc--ChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 45559999999999999999999999999998 899999999999999 999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCH
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAAL 186 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~ 186 (776)
..|+-.|+++.|...+..+...-+.+..+..+++.+....|++..|.....+...|..+
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~~~~ 234 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELLSEQA 234 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccccchhH
Confidence 99999999999999999999999999999999999999999999998877664444333
No 89
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.85 E-value=2.4e-07 Score=97.61 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kA 122 (776)
++.++..|..++..|+|++|+..|++.+...|.. +....+.+++|.+|++++ +|+.|+..+++.++.+|++ ..+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~--~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCcCCCchHHH
Confidence 6678999999999999999999999999999986 444566799999999999 9999999999999999877 468
Q ss_pred HHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCHHH---HHH--------------HHHHHHHc
Q 004055 123 LLRRARAFDAIGK------------------YEMAMQDVQVLLGVEPNHRDA---LEI--------------ARRLRTAL 167 (776)
Q Consensus 123 l~~rA~ay~aLGr------------------~deAl~d~~kAL~LdP~N~~a---l~~--------------la~ll~~l 167 (776)
+|.+|.++..+++ ...|+..|++.+...|++..+ ... +++.+.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999866651 257889999999999988533 222 23445556
Q ss_pred CChHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 168 GPRQEAQQDLQS-----RPSPAALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 168 g~~qeA~~~l~k-----kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
|.+..|+.-+.. --.|....+++.+..++..+|..++|..+...
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 667666665544 13366778899999999999999999887543
No 90
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.85 E-value=6.5e-09 Score=90.89 Aligned_cols=84 Identities=26% Similarity=0.427 Sum_probs=73.9
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYE 137 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~d 137 (776)
+.|+|+.|+..|++++...|.++ ....++++|.||+++| +|++|+..+++ +..+|.+....+.+|+|++.+|+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~--~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQG--KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTT--HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCC--CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 46899999999999999999632 3667788999999999 99999999999 8899999999999999999999999
Q ss_pred HHHHHHHHH
Q 004055 138 MAMQDVQVL 146 (776)
Q Consensus 138 eAl~d~~kA 146 (776)
+|+..+.++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 91
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.83 E-value=2.5e-08 Score=100.01 Aligned_cols=98 Identities=29% Similarity=0.335 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHH------HHhhhhhhHHhhhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Q 004055 500 LFDKAALKFQEVAAL------AFFNWGNVHMCAARKRIPLDESAGKEVVAAQLQTAYDWVKEKYSLAKEKYEEALLIKPD 573 (776)
Q Consensus 500 lf~~a~~kfqe~aa~------a~fnwgnvh~~~ark~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~~ye~a~~ikpd 573 (776)
+|+.|..+++...+. +|+|||-++.-.|+-+-.. .+++.|..|.+||++||.|+|+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~------------------es~~miedAisK~eeAL~I~P~ 67 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP------------------ESKKMIEDAISKFEEALKINPN 67 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH------------------HHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc------------------hHHHHHHHHHHHHHHHHhcCCc
Confidence 789999999887776 9999999998777643211 1467899999999999999999
Q ss_pred hhHHHHHhHhhHHHHhhhhhhhhhhhccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004055 574 FYEGLLALGQQQFEMAKLHWSYALAKKIDLSGWDATETLQLFDSAEEKMKTATEM 628 (776)
Q Consensus 574 f~e~~~a~g~q~fe~akl~w~~~~~~~~d~~~~~s~~~~~~~~~a~~~~~~~~~~ 628 (776)
+|+++..||+-..++|+|. .+..++..+|++|.+.|++|...
T Consensus 68 ~hdAlw~lGnA~ts~A~l~-------------~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLT-------------PDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhc-------------CChHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999977 13468889999999999888763
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.78 E-value=1.1e-07 Score=109.52 Aligned_cols=166 Identities=18% Similarity=0.116 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTP----KTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV------ 115 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP----~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------ 115 (776)
...+...|..|+.+|+|+.|+..|..|++..- ..|+.++....++|..|+.++ +|.+|+..|.+||.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--KYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhcC
Confidence 44555699999999999999999999999821 124456777778999999999 999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHhh------
Q 004055 116 --QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEP--------NHRDALEIARRLRTALGPRQEAQQDLQS------ 179 (776)
Q Consensus 116 --dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP--------~N~~al~~la~ll~~lg~~qeA~~~l~k------ 179 (776)
+|....++.++|.+|...|+|++|..+|++|+.+-- .=...+..++.++..++++++|...+++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 555677899999999999999999999999998742 2245566677788888999999888775
Q ss_pred -CCCCCC---HHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 180 -RPSPAA---LGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 180 -kl~P~~---~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.+.+.+ +..+..+|.+|..+|+|.+|+.+++++.
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 244444 5678899999999999999999999976
No 93
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=98.77 E-value=2.9e-08 Score=87.16 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=66.8
Q ss_pred ceeEeeccceeEEeccCCCCHHHHHHHHHhHCCC-CCceEEEEecCCC-CeeeecChHHHHHHHHhcccccccCcccccC
Q 004055 293 PLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPS-SKSVLIKYKDNDG-DLVTITCTAELRLAESASDSLMTKEPEADKS 370 (776)
Q Consensus 293 ~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~-~~~~~iKYkDeDG-DlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~ 370 (776)
.|||||.. +-.|.+|+.++|.+|+++|++|+.. ...+.+.|||+++ ++|.+ +++||+.|.+.+
T Consensus 4 vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l-~d~dle~aws~~------------- 68 (80)
T cd06406 4 VVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL-SDTNMEDVWSQA------------- 68 (80)
T ss_pred EEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc-ChHHHHHHHHhh-------------
Confidence 58999965 8888999999999999999999997 5669999999875 89888 999999999998
Q ss_pred CCCCcEEEEEEe
Q 004055 371 DSVGMLRLHIVD 382 (776)
Q Consensus 371 ~~~g~~rL~v~e 382 (776)
..|-++||+..
T Consensus 69 -~~~~lTLwC~~ 79 (80)
T cd06406 69 -KDGCLTLWCTL 79 (80)
T ss_pred -cCCeEEEEEec
Confidence 78899999974
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.5e-07 Score=107.02 Aligned_cols=168 Identities=20% Similarity=0.050 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..|..-|..+...+.+++|+..|.+|-++.|..| .+ .+.+|.-|++++ ++.-|-..+..|+.+.|.++-.+.-
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h--lP--~LYlgmey~~t~--n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH--LP--SLYLGMEYMRTN--NLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--ch--HHHHHHHHHHhc--cHHHHHHHHHHHHhcCCCcchhhhh
Confidence 44555555555555555555555555555555542 12 233455555555 6666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC----CCC---HHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVE----PNH---RDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPI 196 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~Ld----P~N---~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l 196 (776)
+|.+.+..+.|.+|...|+.++..- +.. ...+.++|+++.+++.+.+|+..+++ ...|.++..+...|.+|
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 6666666666666666666655221 111 23356777777777888888877776 56678888888888888
Q ss_pred HhCCCccchhHHhhhhcCCCCCC
Q 004055 197 AGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
..+|+++.|..++-|+....|..
T Consensus 500 ~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHhcChHHHHHHHHHHHhcCCcc
Confidence 88888888888888877777765
No 95
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.75 E-value=1.2e-07 Score=78.12 Aligned_cols=92 Identities=23% Similarity=0.305 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
+++++|.++...| ++++|+..+.+++...|.+..+++.+|.++...++++.|+..|++++.+.|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLG--DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHh--cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhh
Q 004055 166 ALGPRQEAQQDLQS 179 (776)
Q Consensus 166 ~lg~~qeA~~~l~k 179 (776)
..|++..|...+..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 99999998887754
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=98.75 E-value=1.3e-07 Score=93.79 Aligned_cols=116 Identities=10% Similarity=-0.025 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.-+.++..|..+|+.|+|++|...|+-..-++|.+ +..+..+|.|+..++ +|++|+..|..|..++++++...
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n----~~Y~~GLaa~~Q~~k--~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN----PDYTMGLAAVCQLKK--QFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcccCCCCcc
Confidence 446788999999999999999999999999999998 888999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
+..|.||..+|+...|...|..++. .|.+..+.......+..
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~ 150 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEA 150 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHH
Confidence 9999999999999999999999998 57766655544444443
No 97
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=8e-08 Score=94.48 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=100.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Q 004055 54 NKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRALLRRARAF 130 (776)
Q Consensus 54 n~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay 130 (776)
+-+|-.+.|..+...+...++..+.. ..+.+++++|.++..+| +|++|+..|.+++.+.|+. +.+++.+|.+|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~ 82 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGE--KEAFTYYRDGMSAQSEG--EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82 (168)
T ss_pred cccccccccccchhhhhHhccCCchh--HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 44566667788888887766655543 35788999999999999 9999999999999997763 45899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HcCChHHHHHHHh
Q 004055 131 DAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT-------ALGPRQEAQQDLQ 178 (776)
Q Consensus 131 ~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~-------~lg~~qeA~~~l~ 178 (776)
..+|++++|+..|.+++.++|.+...+..++.++. .+|+++.|...+.
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99999999999999999999999999999999988 6667665554443
No 98
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.75 E-value=5.1e-07 Score=101.21 Aligned_cols=166 Identities=12% Similarity=0.022 Sum_probs=125.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
+..-+....+.|+++.|..+|.++.+.+|++ ........+.+++..| +++.|+..++++++.+|+++.++..++.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~---~~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~~~~al~ll~~ 195 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADND---QLPVEITRVRIQLARN--ENHAARHGVDKLLEVAPRHPEVLRLAEQ 195 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4444555688888888888888888888875 1122234477888887 8888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhh------------------------------------------CCCCHHHHHHHHHHHHH
Q 004055 129 AFDAIGKYEMAMQDVQVLLGV------------------------------------------EPNHRDALEIARRLRTA 166 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~L------------------------------------------dP~N~~al~~la~ll~~ 166 (776)
+|...|++++|+..+.+..+. .|+++.++..++..+..
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 888888888888555544432 23455566666777777
Q ss_pred cCChHHHHHHHhhC---------------------------------CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 167 LGPRQEAQQDLQSR---------------------------------PSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 167 lg~~qeA~~~l~kk---------------------------------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.|+.+.|...+.+. ..|+++..+..+|+++...+++.+|+.+++++.
T Consensus 276 ~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777665441 458888889999999999999999999999988
Q ss_pred CCCCCC
Q 004055 214 APAGGL 219 (776)
Q Consensus 214 ~s~P~~ 219 (776)
...|..
T Consensus 356 ~~~P~~ 361 (398)
T PRK10747 356 KQRPDA 361 (398)
T ss_pred hcCCCH
Confidence 777664
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.6e-08 Score=112.16 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=106.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
..-.|..++-.|+|++|+.+|+.||...|++ ..+|..+|+.+..-. +..+||..|++||++.|.++++.|++|.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd----~~lWNRLGAtLAN~~--~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPND----YLLWNRLGATLANGN--RSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCch----HHHHHHhhHHhcCCc--ccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 3457888999999999999999999999998 889999999999888 9999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCChHHHHH
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPN----------HRDALEIARRLRTALGPRQEAQQ 175 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~----------N~~al~~la~ll~~lg~~qeA~~ 175 (776)
+++.+|.|++|+.+|-.||.+.+. +..++..+..++..+++.+-...
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 999999999999999999999875 13577788888888877664433
No 100
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.74 E-value=3.2e-07 Score=93.74 Aligned_cols=161 Identities=20% Similarity=0.173 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH---
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV--- 120 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~--- 120 (776)
..+..++..|..+++.|+|.+|+..|++.+...|.. +....+.+.+|.+++..| +|..|+..+++.+...|+++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-~~a~~A~l~la~a~y~~~--~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-PYAPQAQLMLAYAYYKQG--DYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-TTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCCcchh
Confidence 347899999999999999999999999999999985 567789999999999999 99999999999999999874
Q ss_pred HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH---HH--------------HHHHHHHcCChHH
Q 004055 121 RALLRRARAFDAIGK-----------YEMAMQDVQVLLGVEPNHRDAL---EI--------------ARRLRTALGPRQE 172 (776)
Q Consensus 121 kAl~~rA~ay~aLGr-----------~deAl~d~~kAL~LdP~N~~al---~~--------------la~ll~~lg~~qe 172 (776)
.++|.+|.+++.+.+ ...|+..|+..+...|++.-+- .. ++..+.+.|.+..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 689999999877642 4589999999999999985332 22 2344445566777
Q ss_pred HHHHHhh--CCCC---CCHHHHHHHHHHHHhCCCccchhH
Q 004055 173 AQQDLQS--RPSP---AALGASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 173 A~~~l~k--kl~P---~~~~a~~~lA~~l~~LG~~eeArk 207 (776)
|+..+.. .--| ....++..+..++..+|....|..
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 7666654 1123 345678888999999999885543
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=6e-07 Score=95.87 Aligned_cols=113 Identities=10% Similarity=0.038 Sum_probs=99.1
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC---CHHH
Q 004055 47 HELKEEGNKR-FQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR---FVRA 122 (776)
Q Consensus 47 ~~LkeeGn~l-fqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~---n~kA 122 (776)
...+..+..+ +..|+|++|+..|++.|...|+. +..+.+++.+|.+|+..| +|++|+..|.+++...|+ .+.+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g--~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKG--KKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567777776 66799999999999999999985 334678999999999999 999999999999998887 5789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
++.+|.++..+|+++.|...|+++++..|++..+.....+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999876554443
No 102
>PRK11906 transcriptional regulator; Provisional
Probab=98.73 E-value=4.3e-07 Score=102.42 Aligned_cols=161 Identities=9% Similarity=-0.006 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH---HhCCCCCCChHHHHHHHHHHHHHc---C----CCCHHHHHHHHHHHHH
Q 004055 48 ELKEEGNKRFQNK---DYVGALEQYDNAL---RLTPKTHPDRAVFHSNRAACLMQM---K----PINYETVIAECTMALQ 114 (776)
Q Consensus 48 ~LkeeGn~lfqkG---dyeeAle~Y~KAL---kLdP~~~~d~A~ay~n~A~cy~~L---G----~gdyeeAi~~~~kALe 114 (776)
.++..|...+.++ ....|+..|.+|+ .++|.+ +.+|..+|.||+.+ | +.+-.+|.+...+|++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~----a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK----TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 5577777776655 4567999999999 899987 99999999999887 1 2356688999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHH
Q 004055 115 VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVR 192 (776)
Q Consensus 115 ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~l 192 (776)
++|.++.|++.+|.++...++++.|...|++++.++|+.+.+++..+.++...|+.++|...+.+ +++|--..+-.+.
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 7889888877777
Q ss_pred HHH-HHhCCCccchhHHhhhh
Q 004055 193 GAP-IAGLGPCLPARPVGKKA 212 (776)
Q Consensus 193 A~~-l~~LG~~eeArk~~KKa 212 (776)
-++ .+.....+.|.+.+-|-
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 413 ECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHcCCchhhhHHHHhhc
Confidence 777 67778888888877663
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=5.4e-07 Score=97.55 Aligned_cols=168 Identities=12% Similarity=-0.028 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..+...+++..|...|.++++..|.+. +-....+..|.++...| ++++|+..+.+++..+|++..++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TERERAHVEALSAWIAG--DLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 66788888999999999999999999999988652 33456778899999999 9999999999999999999988776
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 126 RARAFDAIGKYEMAMQDVQVLL----GVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL----~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
+.++..+|++..+...+.+++ ..+|.+..++..++.++...|++.+|...+.+ ...|.++.++..+|.+++..
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 667766666555555555554 56777778888899999999999999999987 67899999999999999999
Q ss_pred CCccchhHHhhhhcCCCC
Q 004055 200 GPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 200 G~~eeArk~~KKa~~s~P 217 (776)
|++++|..++.+.....|
T Consensus 162 g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 162 GRFKEGIAFMESWRDTWD 179 (355)
T ss_pred CCHHHHHHHHHhhhhccC
Confidence 999999999999764433
No 104
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.8e-07 Score=109.75 Aligned_cols=163 Identities=15% Similarity=0.047 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
|+.++..|..+..+|+|++|..+|.++++.+|++ ....++.+|+.|+..| ++..|+..+.+.+...|++......
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---~~l~~~GlgQm~i~~~--dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN---FVLPLVGLGQMYIKRG--DLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC---ccccccchhHHHHHhc--hHHHHHHHHHHHHHhCcchHHHHHH
Confidence 4445555555555555555555555555555443 1233444445554444 5555555555555555555555555
Q ss_pred HHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------hHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004055 126 RARAFDAIG----KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP------RQEAQQDLQSRPSPAALGASAVRGAP 195 (776)
Q Consensus 126 rA~ay~aLG----r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~------~qeA~~~l~kkl~P~~~~a~~~lA~~ 195 (776)
+|.+|...+ ..+.|...+.++++..|.+..++..++.++..... +..|...+...-.+-.+....++|..
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 554444443 34445555555555555555555554444443211 22222222222222334445555555
Q ss_pred HHhCCCccchhHHhhhhc
Q 004055 196 IAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 196 l~~LG~~eeArk~~KKa~ 213 (776)
++.+|.+..|..+++++.
T Consensus 462 hf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcChHHHHHHHHHHh
Confidence 555555555555555543
No 105
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=4e-07 Score=102.36 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
...+..+...|..|.++.|...++..|+..|+| +.+...++.+++..+ ++.+|+..+.+++.++|......+.+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N----~~~~~~~~~i~~~~n--k~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN----PYYLELAGDILLEAN--KAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 356788888999999999999999999999988 888888999999998 99999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
|.+|.+.|++.+|+..++..+.-+|+|+..|..++..+..+|+..++.. .++..|+..|++++|.
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~---------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL---------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH---------------HHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999999999999998766544 4567788888888888
Q ss_pred HHhhhhc
Q 004055 207 PVGKKAG 213 (776)
Q Consensus 207 k~~KKa~ 213 (776)
...+.+.
T Consensus 446 ~~l~~A~ 452 (484)
T COG4783 446 IFLMRAS 452 (484)
T ss_pred HHHHHHH
Confidence 8877765
No 106
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.72 E-value=1.1e-06 Score=98.80 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH-HH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV-RA 122 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~-kA 122 (776)
.++.....+|...+..|+|..|.....++.+..|.. ...+...|.++.++| +++.|..++.++.+..|++. .+
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~----~~~~llaA~aa~~~g--~~~~A~~~l~~a~~~~p~~~l~~ 155 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP----VLNLIKAAEAAQQRG--DEARANQHLEEAAELAGNDNILV 155 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCcCchHH
Confidence 467777888888888888888888888888887764 555666777888888 88888888888888888775 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--C--------------------
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--R-------------------- 180 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--k-------------------- 180 (776)
...++.++...|+++.|+..++..++..|+|+.++..++.++...|+++.+...+.. +
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 555688888888888888888888888888888888888888888887766554433 0
Q ss_pred ------------------CCC----CCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 181 ------------------PSP----AALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 181 ------------------l~P----~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
..| .++..+..++..+...|+++.|.....++....|+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence 123 46677777888888888888888888887765555
No 107
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.70 E-value=4.8e-07 Score=105.03 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHc
Q 004055 45 RAHELKEEGNKRFQNKD---YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKP------INYETVIAECTMALQV 115 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGd---yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~------gdyeeAi~~~~kALel 115 (776)
.|..++.+|..++.+++ +..|+.+|++||+++|++ +.+|..++.||....- .+...+.....+++.+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~----a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF----TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 47788999998887765 889999999999999998 8899999998876530 1234556666666664
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHH
Q 004055 116 --QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASA 190 (776)
Q Consensus 116 --dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~ 190 (776)
+|..+.+|..+|..+...|++++|...+++++.++| +..++..++.++...|+.++|...+.+ .++|..+..+.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 888889999999999999999999999999999999 588999999999999999999999987 68888876443
No 108
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.70 E-value=5.5e-08 Score=80.58 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004055 89 NRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 89 n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~ 154 (776)
.+|..++..| +|++|+..|++++..+|.++.+++.+|.|+..+|++++|+..|++++.++|+|+
T Consensus 2 ~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQG--DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCT--HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677788887 888888888888888888888888888888888888888888888888888775
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.70 E-value=3e-07 Score=83.04 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDAL 157 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al 157 (776)
+..++.+|..++..| +|++|+..|..++..+|++ ..+++.+|.+++..|+++.|+..|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAG--DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 356899999999999 9999999999999999876 6799999999999999999999999999999986 6789
Q ss_pred HHHHHHHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 158 EIARRLRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 158 ~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
..++.++..++++.+|...+.. ...|.+..+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999998876 455666543
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.70 E-value=3.3e-07 Score=90.49 Aligned_cols=94 Identities=13% Similarity=-0.019 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
-...+.+|.-++..| ++++|...|+.++.++|.+...|+.+|.|+..+|+|.+|+..|.+++.++|+|+..+..++.|
T Consensus 35 l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVK--EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 455677888899999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhh
Q 004055 164 RTALGPRQEAQQDLQS 179 (776)
Q Consensus 164 l~~lg~~qeA~~~l~k 179 (776)
+..+|+...|...|..
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 9999999999998876
No 111
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.67 E-value=1.3e-06 Score=98.02 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACL-MQMKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy-~~LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
.+++.....+|...+..|+|..|.....++-...+. +.+++.++... .+.| +++.|..++.+|.+.+|++..
T Consensus 81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-----p~l~~llaA~aA~~~g--~~~~A~~~l~~A~~~~~~~~~ 153 (398)
T PRK10747 81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-----PVVNYLLAAEAAQQRG--DEARANQHLERAAELADNDQL 153 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCcchH
Confidence 457888899999999999999999777765554332 45555565444 8888 999999999999999999864
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--C------------------
Q 004055 122 A-LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--R------------------ 180 (776)
Q Consensus 122 A-l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--k------------------ 180 (776)
+ ....+.++...|+++.|+..+++.++.+|+|+.++..+..++...|+++++...+.. +
T Consensus 154 ~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 154 PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4 345599999999999999999999999999999999999999999999988843322 0
Q ss_pred ------------------------CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 181 ------------------------PSPAALGASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 181 ------------------------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
..|.++.....++..+...|+.++|.....++..
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1245666777889999999999999999988776
No 112
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.4e-07 Score=99.70 Aligned_cols=160 Identities=16% Similarity=0.019 Sum_probs=143.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
.+.|.+|+..|-+.+|...++.+|...|- ++.+..++.+|..+. +...|+..+...|..-|.+...+...|++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-----~dTfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-----PDTFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-----hhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 46799999999999999999999999886 677888999999999 99999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhH
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk 207 (776)
+..++++++|++.|+.+++++|.|.+++..++.-+..-++.+-|+.+|.+ ...-.++..+.++|.|....++++-+..
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999999999999999998888888888899999998877 4556778888889999999999999998
Q ss_pred HhhhhcCCC
Q 004055 208 VGKKAGAPA 216 (776)
Q Consensus 208 ~~KKa~~s~ 216 (776)
.+.++.+..
T Consensus 380 sf~RAlsta 388 (478)
T KOG1129|consen 380 SFQRALSTA 388 (478)
T ss_pred HHHHHHhhc
Confidence 888877653
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=1.1e-06 Score=95.28 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=155.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 34 GVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMAL 113 (776)
Q Consensus 34 ~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL 113 (776)
+++.|+ .+-+.++.+|..|...|+-.-|+..+.+.|.+.|+. ..+...+|.+++++| ++++|..+|+.+|
T Consensus 64 Ave~dp----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF----~~ARiQRg~vllK~G--ele~A~~DF~~vl 133 (504)
T KOG0624|consen 64 AVEGDP----NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF----MAARIQRGVVLLKQG--ELEQAEADFDQVL 133 (504)
T ss_pred HHcCCc----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH----HHHHHHhchhhhhcc--cHHHHHHHHHHHH
Confidence 345555 567889999999999999999999999999999986 788999999999999 9999999999999
Q ss_pred HcCCCC---HHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 114 QVQPRF---VRALLR------------RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 114 eldP~n---~kAl~~------------rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
..+|.+ ..++.+ ....++..|++..|+....+.|++.|=+...+...+.|+...|+...|+..+.
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999954 233333 33445677999999999999999999999999999999999999999999886
Q ss_pred h--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 179 S--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 179 k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
. ++..++-..++-.+..++..|+.+.+....+......|+.
T Consensus 214 ~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 214 QASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 6 7888899999999999999999999999999888777774
No 114
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.58 E-value=1.7e-06 Score=85.71 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 004055 82 DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALE 158 (776)
Q Consensus 82 d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~ 158 (776)
..+.+++++|.++...| +|++|+..|.+++.+.|+. ..+++.+|.++..+|+++.|+..|++++.++|++..++.
T Consensus 33 ~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADG--EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 35788999999999999 9999999999999987764 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCh
Q 004055 159 IARRLRTALGPR 170 (776)
Q Consensus 159 ~la~ll~~lg~~ 170 (776)
.++.++..+|+.
T Consensus 111 ~lg~~~~~~g~~ 122 (172)
T PRK02603 111 NIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHcCCh
Confidence 999999988874
No 115
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=4.1e-07 Score=93.59 Aligned_cols=164 Identities=21% Similarity=0.154 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
++|..++++|+.+=..|-+.-|.-.|+++|.+.|.- +..+..+|..+..-| +|+.|.+.++..+++||.+--+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m----~~vfNyLG~Yl~~a~--~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc----HHHHHHHHHHHHhcc--cchHHHHHhhhHhccCCcchHHH
Confidence 789999999999999999999999999999999985 899999999999988 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC-----------------------
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR----------------------- 180 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk----------------------- 180 (776)
.+||.+++-.|++..|.+++.+-..-||++|-=-.-+-.. ...-+.++|...+.++
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~ 215 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE 215 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH
Confidence 9999999999999999999999999999987321111110 1111222222211110
Q ss_pred --------CC-CC-------CHHHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 181 --------PS-PA-------ALGASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 181 --------l~-P~-------~~~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
.. .+ -...++.+|.-+..+|+.++|...+|-+..
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 00 01 123677888999999999999999888653
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.56 E-value=3.7e-06 Score=81.05 Aligned_cols=133 Identities=24% Similarity=0.208 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF--- 119 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n--- 119 (776)
.+.+...+......+..+++..+...+++.+.-.|+. +....+++.+|.+++..| +|++|+..++.++...|+.
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s-~ya~~A~l~lA~~~~~~g--~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSS-PYAALAALQLAKAAYEQG--DYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCHHHH
Confidence 3557778888888889999999999999999988875 233567888999999998 9999999999999987655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
..+.+++|.+++..|++++|+..++. +.-.+-.+.++...+.++...|++++|+..|.+
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46889999999999999999999866 333444567777888888888888888887754
No 117
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.55 E-value=2.4e-07 Score=76.75 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=60.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV 120 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~ 120 (776)
+..|..+++.|+|++|+..|+++++..|.+ +.+++.+|.|+..+| ++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN----PEAWYLLGRILYQQG--RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH----HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCCC
Confidence 357999999999999999999999999987 999999999999999 99999999999999999875
No 118
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3e-07 Score=98.97 Aligned_cols=170 Identities=13% Similarity=-0.016 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
.+-+......|..-.....|+..|.+.+...|.+ ..++..+|.+|..|+ ++++|+..|..+++++|.|..+.--
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~----VT~l~g~ARi~eam~--~~~~a~~lYk~vlk~~~~nvEaiAc 329 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD----VTYLLGQARIHEAME--QQEDALQLYKLVLKLHPINVEAIAC 329 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch----hhhhhhhHHHHHHHH--hHHHHHHHHHHHHhcCCccceeeee
Confidence 3456667777888889999999999999999987 888999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhCC
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR----P-SPAALGASAVRGAPIAGLG 200 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk----l-~P~~~~a~~~lA~~l~~LG 200 (776)
+|.-|+--++.+.|+.+|+++|.+--.+++.+.+++.|....++++-++..|++. - .-...+.|+++|.+....|
T Consensus 330 ia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 330 IAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred eeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc
Confidence 9999999999999999999999999999999999999999999998888888762 2 2345678888898888899
Q ss_pred CccchhHHhhhhcCCCCCCcc
Q 004055 201 PCLPARPVGKKAGAPAGGLLV 221 (776)
Q Consensus 201 ~~eeArk~~KKa~~s~P~~~v 221 (776)
++.-|.+.++-+...++....
T Consensus 410 D~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred chHHHHHHHHHHhccCcchHH
Confidence 999999888888887777633
No 119
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.54 E-value=1.9e-06 Score=82.76 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC--
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF-- 119 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n-- 119 (776)
-++.+..+-.+|..+...|+.++|++.|.++|.+.|.. +++|.|+|+.+...| +-++|+.++++|+++.-..
T Consensus 39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r----aSayNNRAQa~RLq~--~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPER----ASAYNNRAQALRLQG--DDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc----hHhhccHHHHHHHcC--ChHHHHHHHHHHHHhcCccch
Confidence 46788899999999999999999999999999999997 999999999999999 9999999999999985433
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 120 --VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 120 --~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
..+|..+|.+|..+|+.+.|..+|..+-.+-..
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 468999999999999999999999999887654
No 120
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.54 E-value=2.2e-06 Score=104.25 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=131.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF 130 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay 130 (776)
.....+...|++++|+..+++++.-.|.. ...+..+|.+|..+| +|++|+..|+++++.+|+++.+++.++.+|
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~----~~~llalA~ly~~~g--dyd~Aiely~kaL~~dP~n~~~l~gLa~~y 146 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNIS----SRGLASAARAYRNEK--RWDQALALWQSSLKKDPTNPDLISGMIMTQ 146 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 44556678899999999999999333332 455555688999999 999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHH
Q 004055 131 DAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPV 208 (776)
Q Consensus 131 ~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~ 208 (776)
...++.++|+..+++++..+|.+... ..+..++...++..+|+..+.+ ...|.+..++..+..++..+|-...|...
T Consensus 147 ~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 147 ADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred hhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999999997776 5556666667777779988887 67899999999999999999999999988
Q ss_pred hhh
Q 004055 209 GKK 211 (776)
Q Consensus 209 ~KK 211 (776)
.++
T Consensus 226 ~~~ 228 (822)
T PRK14574 226 AKE 228 (822)
T ss_pred HHh
Confidence 776
No 121
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2.8e-06 Score=91.72 Aligned_cols=170 Identities=15% Similarity=0.065 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF--- 119 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n--- 119 (776)
.++...+.+.|..|...|-|+.|...|...+... .. ...+.-.+..+|.+-. ++++||+...+...+.+..
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-ef---a~~AlqqLl~IYQ~tr--eW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EF---AEGALQQLLNIYQATR--EWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hh---hHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHcCCccchh
Confidence 3556666666666666666666666665554421 11 1334444555555555 5555555555555554432
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHH-HHHHHHH
Q 004055 120 --VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALG-ASAVRGA 194 (776)
Q Consensus 120 --~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~-a~~~lA~ 194 (776)
+..|.-+|..+....+++.|+..+.+++.-||++.-+-..++.+....|+++.|+..+.. ..+|+... ....+..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 234444555555555555555555555555555555555555555555555555555544 33443322 2334455
Q ss_pred HHHhCCCccchhHHhhhhcCCCCC
Q 004055 195 PIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 195 ~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
||..+|+.++...++.+.....++
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCC
Confidence 555555555555555554444333
No 122
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=1.7e-06 Score=84.19 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH---HH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV---RA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~---kA 122 (776)
+..++..|...++.|+|.+|+..|+......|.+ +....+...++.+|++.+ +|+.|+..+.+-|+++|.++ -|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~--~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQG--DYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCCCccHH
Confidence 6789999999999999999999999999999975 344678899999999999 99999999999999999886 48
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 004055 123 LLRRARAFDAIGK---------------YEMAMQDVQVLLGVEPNHRDALE 158 (776)
Q Consensus 123 l~~rA~ay~aLGr---------------~deAl~d~~kAL~LdP~N~~al~ 158 (776)
+|.+|.+++.+.. ...|+.+|++++..-|++..+-.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999999999987 88999999999999999876643
No 123
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.52 E-value=2.2e-06 Score=98.85 Aligned_cols=167 Identities=18% Similarity=0.152 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC----
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTP----KTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ---- 116 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP----~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld---- 116 (776)
.+..+...|..|...++|.+|+..|++|+.+.- ..||..+.++.|+|..|...| +|.+|..+|.+|+++-
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G--Kf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG--KFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHHhh
Confidence 445556799999999999999999999999764 456778999999999999999 9999999999999872
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHcCChHHHHHHHhhC----
Q 004055 117 ----PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVE-----PNH---RDALEIARRLRTALGPRQEAQQDLQSR---- 180 (776)
Q Consensus 117 ----P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld-----P~N---~~al~~la~ll~~lg~~qeA~~~l~kk---- 180 (776)
|.-...+..++.++...+++++|+..+++++++- +.| +.++.+++.++..+|++.+|...+.+.
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3345688899999999999999999999999863 233 567888999999999999999988761
Q ss_pred ------CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 181 ------PSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 181 ------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
..+........+|..+..++++..|...+..+.
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 123334456778999999999998888877754
No 124
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.6e-06 Score=98.80 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=115.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-------CCCHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ-------PRFVRA 122 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-------P~n~kA 122 (776)
.-.|..+.+.+.+.-|-.+|.+|+.+.|.+ +..+.-+|.+.+..+ .|.+|+.++..+|..- +.+...
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D----plv~~Elgvvay~~~--~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSD----PLVLHELGVVAYTYE--EYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCc----chhhhhhhheeehHh--hhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 457888888999999999999999999987 677888888888888 8999999999888431 234556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAP 195 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~ 195 (776)
+.++|-++.+++++++|+..|+++|.+.|.+..++..++-++..+|.++.|+..|.+ .+.|.+.-+.-+++.+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998877 5678887666665543
No 125
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.1e-06 Score=95.30 Aligned_cols=168 Identities=13% Similarity=-0.031 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
.+.+++.|..+-..|+.++|+.+|-+.-.+.-++ +..++.+|.+|..|. +..+||..+.++..+-|+++..+..
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn----~evl~qianiye~le--d~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN----AEVLVQIANIYELLE--DPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhh--CHHHHHHHHHHhcccCCCCHHHHHH
Confidence 4568888999999999999999999998888877 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
+|.+|-+-|+-..|.+++=...+.-|.|.+....++..+....-.+.++.+|++ .+.|.-.....+.+.|+.+.|+|.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999999999999999999999999999999988888999999988 477988999999999999999999
Q ss_pred chhHHhhhhcCCCCCC
Q 004055 204 PARPVGKKAGAPAGGL 219 (776)
Q Consensus 204 eArk~~KKa~~s~P~~ 219 (776)
.|...++.....=|++
T Consensus 678 ka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999877666665
No 126
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.50 E-value=3.5e-06 Score=89.47 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kA 122 (776)
+..+++.+..+++.|+|..|...|..-|+..|++ ...+.++|.+|.|++.+| +|+.|...|..+++-.|++ +++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg--~y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQG--DYEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcc--cchHHHHHHHHHHHhCCCCCCChHH
Confidence 4459999999999999999999999999999986 356788999999999999 9999999999999988765 578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
++.+|.|...+|+.++|...|+++++-.|+...+......
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999887654433
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.50 E-value=5.8e-07 Score=75.80 Aligned_cols=70 Identities=27% Similarity=0.445 Sum_probs=52.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 91 AACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 91 A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
..+|+..+ +|+.|+..+++++.++|.++.+++.+|.||..+|++.+|+.+|+++++++|+++.+......
T Consensus 2 ~~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQE--DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCC--CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 34566666 78888888888888888888888888888888888888888888888888877776655443
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.45 E-value=3.7e-06 Score=94.55 Aligned_cols=128 Identities=10% Similarity=-0.065 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL--LRRARAFDAIGKYEMAMQDVQVLLGVEPNHR--DALE 158 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl--~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~--~al~ 158 (776)
.+.++...|..+...| ++++|+..++++++..|++.... ..+.......++.+.++..++++++.+|+|+ .++.
T Consensus 262 ~~~l~~~~a~~l~~~g--~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCD--DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 4778888899999999 99999999999999999987642 2233334446888999999999999999999 8899
Q ss_pred HHHHHHHHcCChHHHHHHHh--h--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 159 IARRLRTALGPRQEAQQDLQ--S--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 159 ~la~ll~~lg~~qeA~~~l~--k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.++.++.+.|++.+|..+|+ . ...|+... +..+|.++..+|+.++|+.+++++.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999998 3 35565555 5588999999999999999999864
No 129
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.45 E-value=6.1e-06 Score=95.82 Aligned_cols=126 Identities=15% Similarity=0.082 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
.+++.+|++|-.+| +|++|+.++++||+..|..+..|+.+|++|-+.|++.+|...++.|-.+|+.|..+....+..+
T Consensus 195 w~~~~lAqhyd~~g--~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 195 WTLYFLAQHYDYLG--DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 46788999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHhh--CC--CCC-CHH----HHH--HHHHHHHhCCCccchhHHhhhh
Q 004055 165 TALGPRQEAQQDLQS--RP--SPA-ALG----ASA--VRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 165 ~~lg~~qeA~~~l~k--kl--~P~-~~~----a~~--~lA~~l~~LG~~eeArk~~KKa 212 (776)
.+.|+.++|...+.. +. +|. +.. .|+ -.|.+|.+.|++..|.+.+...
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999986654 21 221 111 233 3499999999999999887663
No 130
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=98.45 E-value=8.3e-07 Score=79.36 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=60.2
Q ss_pred ccceeEEeccCCCCHHHHHHHHHhHCCCC----CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCCCCC
Q 004055 299 DHDIRLGQMPVNCSFKALREIVSKRFPSS----KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSDSVG 374 (776)
Q Consensus 299 ~~DiR~~~v~~~~~~~~L~~~v~~kF~~~----~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g 374 (776)
..++-++.+.++-+|.+|+..|.+||+.. ..|.|+|.|.|||.|.||+|+||.-|+..+ +. ....
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~ia-----r~------~g~~ 77 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVA-----RS------AGLK 77 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHH-----HH------cCCC
Confidence 45666777777999999999999999976 589999999999999999999999999887 21 1244
Q ss_pred cEEEEEE
Q 004055 375 MLRLHIV 381 (776)
Q Consensus 375 ~~rL~v~ 381 (776)
+++|+|.
T Consensus 78 ~v~L~v~ 84 (86)
T cd06409 78 KLDLHLH 84 (86)
T ss_pred EEEEEEe
Confidence 6888874
No 131
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.9e-06 Score=93.77 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..++-.|..+|..++|..|+.+-.++|+++|++ ..+|...|..+.+++ +..+|+-.|+.|..+.|.....|-.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~----~~alilKG~lL~~~~--R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN----HEALILKGRLLIALE--RHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc----chHHHhccHHHHhcc--chHHHHHHHHHHHhcchhhHHHHHH
Confidence 4556667777888888888888888888888887 667777888888888 8888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHc-CChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR-RLRTAL-GPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la-~ll~~l-g~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+-.||.+.|++.+|....+-++..-|.+..++..++ .++.-- .-.+.|...+++ ++.|....+-..++..+...|+
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence 878888888887777777777776666666666664 332221 123445555554 4556666655555555555666
Q ss_pred ccchhHHhhhhcCCCCC
Q 004055 202 CLPARPVGKKAGAPAGG 218 (776)
Q Consensus 202 ~eeArk~~KKa~~s~P~ 218 (776)
+..+...+++....-|.
T Consensus 454 ~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 454 TKDIIKLLEKHLIIFPD 470 (564)
T ss_pred cchHHHHHHHHHhhccc
Confidence 65555555555443333
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=7e-06 Score=86.29 Aligned_cols=140 Identities=19% Similarity=0.095 Sum_probs=117.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
.+..|..+-..|.|++|+++|+..|.-+|.+ ..+|-..-.+...+| .--+||...+.-|+.-+.+..||.-++.
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----~v~~KRKlAilka~G--K~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTD----TVIRKRKLAILKAQG--KNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcch----hHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4677888899999999999999999999987 667776667777777 7889999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHhh--CCCCCCHHHHHHHHH
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP---RQEAQQDLQS--RPSPAALGASAVRGA 194 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~---~qeA~~~l~k--kl~P~~~~a~~~lA~ 194 (776)
+|...|+|+.|.-+++.++-+.|.|+..+..++.++..+|. .+-+..+|.+ ++.|.+.++++.+-.
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 99999999999999999999999999999999999888775 4556667766 566766665554433
No 133
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=8.6e-06 Score=88.04 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
++...-++|-+.++|++|++.-.+...+.+... ..++.+|+-+|+.++.-. +++.|+..+.+|++.||++..|-+.+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~--~~d~A~~~l~kAlqa~~~cvRAsi~l 220 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS--DVDRARELLKKALQADKKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhCccceehhhhh
Confidence 355667788899999999999999999988642 367888999999988888 99999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNH-RDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N-~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
|+++...|+|..|+..++.+++.||.. +.+...+..||..+|+.++....+.. ...+ .+.+-..++.......-.+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-g~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-GADAELMLADLIELQEGID 299 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-CccHHHHHHHHHHHhhChH
Confidence 999999999999999999999999987 67888899999999999999988876 2222 3444455555555555566
Q ss_pred chhHHhhhhc
Q 004055 204 PARPVGKKAG 213 (776)
Q Consensus 204 eArk~~KKa~ 213 (776)
.|+.+..+-.
T Consensus 300 ~Aq~~l~~Ql 309 (389)
T COG2956 300 AAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHH
Confidence 6666655533
No 134
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=8e-07 Score=73.90 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
+|++|+..|.+++..+|++..+++.+|.||...|++++|...+.+++..+|+++.++..++.
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666665555543
No 135
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.8e-06 Score=92.88 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
...+.|...|+.+.+.++..+|+..|+.|+.+.|.. -.+|-.+-.||+..| .+.+|....+.+++.-|.+.+++
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r----L~~Y~GL~hsYLA~~--~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR----LEIYRGLFHSYLAQK--RFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHhhcchhhh
Confidence 456789999999999999999999999999999985 788999999999999 99999999999999999999999
Q ss_pred HHHH-H-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh-CCCCCCHHHHHHHHHHHHhCC
Q 004055 124 LRRA-R-AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS-RPSPAALGASAVRGAPIAGLG 200 (776)
Q Consensus 124 ~~rA-~-ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k-kl~P~~~~a~~~lA~~l~~LG 200 (776)
-..| . |+..----++|...++++|.++|....+-..++.++..-|++.+++..+.+ -.+-.+...+..+|.++....
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~N 485 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQN 485 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 9987 3 344455678899999999999999999999999999999999999999987 233346677888999999999
Q ss_pred CccchhHHhhhhcCCCCCC
Q 004055 201 PCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 201 ~~eeArk~~KKa~~s~P~~ 219 (776)
.+.+|..++.++....|.+
T Consensus 486 e~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 486 EPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hHHHHHHHHHHHHhcCccc
Confidence 9999999999999999986
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.39 E-value=6.4e-07 Score=78.29 Aligned_cols=79 Identities=29% Similarity=0.357 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 100 INYETVIAECTMALQVQPR--FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 100 gdyeeAi~~~~kALeldP~--n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
|+|+.|+..+++++..+|. +...++.+|.||+.+|+|+.|+..+++ +..+|.+...+..++.++..+|++++|+..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4999999999999999995 466788899999999999999999999 9999999999999999999999999999887
Q ss_pred hh
Q 004055 178 QS 179 (776)
Q Consensus 178 ~k 179 (776)
.+
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 137
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.6e-06 Score=87.47 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 004055 64 GALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG---KYEMAM 140 (776)
Q Consensus 64 eAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG---r~deAl 140 (776)
.-+...+.-|+.+|++ +.-|..+|.+|+.+| ++..|...|.+|+++.|+|+..+..+|.+++... .-.++.
T Consensus 140 ~l~a~Le~~L~~nP~d----~egW~~Lg~~ym~~~--~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 140 ALIARLETHLQQNPGD----AEGWDLLGRAYMALG--RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHhCCCC----chhHHHHHHHHHHhc--chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 3344444445555554 455555555555555 5555555555555555555555555555544332 233455
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 141 QDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 141 ~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
..+++++.+||+|..++..++..++..|++.+|...++.
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 555555555555555555555555555555555555544
No 138
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.38 E-value=1e-06 Score=73.31 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
+++.|+|++|+..|++++..+|.+ ..+++.+|.||+..| ++++|...+.+++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN----PEARLLLAQCYLKQG--QYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHTT---HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 578999999999999999999998 899999999999999 99999999999999999998888777653
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=1e-05 Score=78.05 Aligned_cols=112 Identities=22% Similarity=0.120 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHH
Q 004055 101 NYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALEIARRLRTALGPRQEAQ 174 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~~la~ll~~lg~~qeA~ 174 (776)
++..+...+...+.-+|+. ..+.+.+|.+++..|++++|...|+.++...|++ +.+...++.++...|++++|+
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888899999988 6789999999999999999999999999988765 456777899999999999999
Q ss_pred HHHhhC-CCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 175 QDLQSR-PSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 175 ~~l~kk-l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
..+... ..+..+.+..++|.++...|++++|+..++++
T Consensus 106 ~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 106 ATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999763 34556677888999999999999999999875
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.3e-05 Score=90.50 Aligned_cols=128 Identities=16% Similarity=0.049 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
..+.+..|..++..| .++.|...++..+...|+|+..+..++.++...++..+|.+.+++++.++|+.+....+++.+
T Consensus 306 ~aa~YG~A~~~~~~~--~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAG--QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhc--ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 778999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 164 RTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 164 l~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+...|++++|+..+.. ...|+++..|..++++|..+|+..+|........
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999876 6779999999999999999999998887765543
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.6e-06 Score=88.34 Aligned_cols=115 Identities=25% Similarity=0.163 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK-PINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
.++.|...|..++..|++..|...|.+|+++.|++ +.++..+|.+++... ...-.++...+++||.+||.+..++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n----~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN----PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 35568899999999999999999999999999998 888888998877653 4477899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
+.+|..++..|+|.+|...++..|.+.|.+..-...+...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999876554444443
No 142
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.35 E-value=4.5e-07 Score=98.34 Aligned_cols=108 Identities=19% Similarity=0.426 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 004055 39 SSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR 118 (776)
Q Consensus 39 ~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~ 118 (776)
+.+..++|...+-.+...+..|.++.|++.|..+|.++|.. +.+|..+|.++++++ ....|+++|+.|+.++|+
T Consensus 107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~----a~l~~kr~sv~lkl~--kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL----AILYAKRASVFLKLK--KPNAAIRDCDFAIEINPD 180 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch----hhhcccccceeeecc--CCchhhhhhhhhhccCcc
Confidence 45677888999999999999999999999999999999997 999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
..+.|-.+|++...+|++.+|-.++..+.+++=+
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999998753
No 143
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.34 E-value=2.8e-06 Score=71.63 Aligned_cols=70 Identities=33% Similarity=0.456 Sum_probs=65.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 53 GNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 53 Gn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
...+++.++|+.|+..+++++.++|.+ +.+++.+|.||..+| +|.+|+..++++++..|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g--~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLG--RYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhc--cHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 467899999999999999999999997 889999999999999 9999999999999999999998777664
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=8.6e-06 Score=99.09 Aligned_cols=167 Identities=10% Similarity=-0.045 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH---
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV--- 120 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~--- 120 (776)
.....+......+...+++++|+..+..++...|+. ..+|+..|..|.+.+ ++..+... .++..-+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~----i~~yy~~G~l~~q~~--~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS----ISALYISGILSLSRR--PLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc----eehHHHHHHHHHhhc--chhhhhhh--hhhhhcccccchh
Confidence 346678888888889999999999999999999987 788899999999888 77777666 6666655555
Q ss_pred ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC----
Q 004055 121 ----------------RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR---- 180 (776)
Q Consensus 121 ----------------kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk---- 180 (776)
.||+.+|.||-.+|+.++|...|+++|+++|+|+.++.+++..+... +.++|...+.+.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988 888888766541
Q ss_pred ------------------CCCCCHHH--------------------HHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 181 ------------------PSPAALGA--------------------SAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 181 ------------------l~P~~~~a--------------------~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
..|.+... +.-+-.+|...++|+.+..++|+.....|..
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc
Confidence 34544433 1112267788889999999999988777764
No 145
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=98.32 E-value=3.5e-06 Score=77.15 Aligned_cols=78 Identities=28% Similarity=0.403 Sum_probs=64.7
Q ss_pred eeEee-ccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEe--cCCCC-eeeecChHHHHHHHHhcccccccCccccc
Q 004055 294 LKLVY-DHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYK--DNDGD-LVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 294 vK~~~-~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYk--DeDGD-lVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
-|+.| |.|+|.+.|+.++||.+|+.++.+.|+...++.|||. ++|-| ||+++||+||..-++..+..
T Consensus 15 g~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~--------- 85 (97)
T cd06410 15 GQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRL--------- 85 (97)
T ss_pred CCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHHhhccc---------
Confidence 35554 9999999999999999999999999998777999998 77888 99999999999999776221
Q ss_pred CCCCCcEEEEE
Q 004055 370 SDSVGMLRLHI 380 (776)
Q Consensus 370 ~~~~g~~rL~v 380 (776)
....+.+|+|+
T Consensus 86 ~~~~~rirvfl 96 (97)
T cd06410 86 SGGSARLRVFL 96 (97)
T ss_pred cCCCceEEEEE
Confidence 23455677665
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.30 E-value=1.4e-05 Score=93.99 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
-..+...+..+...+.-++|..+..++-.++|.. +..|+.+|.++...| .+.+|...|..|+.+||+++.....
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~----~~~~~~~G~~~~~~~--~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS----ASVYYLRGLLLEVKG--QLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh----HHHHHHhhHHHHHHH--hhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3455566666667777778888999999999886 889999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 126 RARAFDAIGKYEMAMQ--DVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 126 rA~ay~aLGr~deAl~--d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+|.++..+|+-..|.. .+.-++++||.|+.+|+.++.++..+|+..+|...|+.
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9999999998888888 89999999999999999999999999999999988865
No 147
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.28 E-value=1.2e-05 Score=95.69 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
......|......| ++++|...|.++|+.+|.++.+|+.+|.||..+|+.+.|+...-.|-.++|.+.+.|..++...
T Consensus 140 ~~ll~eAN~lfarg--~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARG--DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34455566666667 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 165 TALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 165 ~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
..+|.+.+|.-.|.+ ..+|.+....+.++..|..+|++..|...+++.....|+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999988 678999999999999999999999999999998766664
No 148
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.27 E-value=7.3e-06 Score=94.73 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.++.....+|..++|...+...++.|.-.|.. .......|..+..|| +-++|...+..++..|+++..+|-.+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH----geslAmkGL~L~~lg--~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEH----GESLAMKGLTLNCLG--KKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc----chhHHhccchhhccc--chHHHHHHHHHHhccCcccchhHHHHH
Confidence 57788889999999999999999999988875 666788899999999 999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccch
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPA 205 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeA 205 (776)
.++..-.+|++|+.+|+.||.++|+|..++.-++.+...+++++........ ...|.....|+..+.++..+|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876664444 57788888899999999999999999
Q ss_pred hHHhhhhcCC
Q 004055 206 RPVGKKAGAP 215 (776)
Q Consensus 206 rk~~KKa~~s 215 (776)
-........+
T Consensus 163 ~~il~ef~~t 172 (700)
T KOG1156|consen 163 LEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHh
Confidence 8886665433
No 149
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.27 E-value=1.9e-05 Score=91.35 Aligned_cols=156 Identities=17% Similarity=0.042 Sum_probs=131.5
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGK 135 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr 135 (776)
.|....|++|..+|.++-...|+ ..+|+.-+.....++ +.++|++.|..+|+.-|.+.+.|+.+|.++.+.++
T Consensus 628 e~en~e~eraR~llakar~~sgT-----eRv~mKs~~~er~ld--~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSISGT-----ERVWMKSANLERYLD--NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred hhccccHHHHHHHHHHHhccCCc-----chhhHHHhHHHHHhh--hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH
Confidence 34455555555555555555554 455666666667777 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 136 YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 136 ~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.+.|...|.+.++..|+.+..+..++.+-...|....|...+.+ ..+|.++..|.-.-++-.+.|..+.|+...-++.
T Consensus 701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887 4679999999888889999999999999988876
Q ss_pred CCCCC
Q 004055 214 APAGG 218 (776)
Q Consensus 214 ~s~P~ 218 (776)
--=|.
T Consensus 781 Qecp~ 785 (913)
T KOG0495|consen 781 QECPS 785 (913)
T ss_pred HhCCc
Confidence 43333
No 150
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.26 E-value=1.4e-05 Score=90.22 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
+.+..+.+.|..|+..|+|++|+..|++||.++|++. ....+|+|+|.||..+| ++++|+.++.+|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-eA~~A~yNLAcaya~LG--r~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-EAQAAYYNKACCHAYRE--EGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 3478999999999999999999999999999999961 01146999999999999 999999999999998
No 151
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.23 E-value=1.6e-06 Score=74.28 Aligned_cols=67 Identities=24% Similarity=0.347 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 81 PDRAVFHSNRAACLMQMKPINYETVIAECTMALQV----Q---PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 81 ~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel----d---P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
|+.+.++.++|.+|..+| +|++|+..|++++.+ . |....+++.+|.||..+|++++|+..+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELG--RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445667777777777777 777777777777655 1 112456777777777777777777777777665
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.21 E-value=2.4e-05 Score=74.33 Aligned_cols=99 Identities=20% Similarity=0.095 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC---CHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR---FVRAL 123 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~---n~kAl 123 (776)
..+++.|..+-..|+.++|+..|++++...... +.+..++..+|.+|..+| ++++|+..++.++...|+ +....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-~~~~~a~i~lastlr~LG--~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG-ADRRRALIQLASTLRNLG--RYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCccccHHHH
Confidence 356777888888888888888888888865543 345667888888888888 888888888888887777 67777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
..++.++..+|++++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888888877665
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=8.1e-05 Score=78.50 Aligned_cols=163 Identities=15% Similarity=0.002 Sum_probs=144.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
-+-...+...|+..-|..++.+.-...|.+ ...--..|..+..+| +|++|+.+|+..|+-||.+.-.+-+.--+
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S----~RV~~lkam~lEa~~--~~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGS----KRVGKLKAMLLEATG--NYKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHhh--chhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 344556788899999999999988888987 556666788888888 99999999999999999999999888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCC---Cccc
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLG---PCLP 204 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG---~~ee 204 (776)
.-..|+--+|++.+...|..-++|.++|..++.++...|++..|...++. -..|-++..+..+|.+++-+| ++.-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 578999998888898888776 5678
Q ss_pred hhHHhhhhcCCCCC
Q 004055 205 ARPVGKKAGAPAGG 218 (776)
Q Consensus 205 Ark~~KKa~~s~P~ 218 (776)
|++++.++....|.
T Consensus 210 arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 210 ARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHhChH
Confidence 99999998877764
No 154
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.16 E-value=7.3e-06 Score=92.54 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRA---LLRRARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kA---l~~rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
.+.+|+|+|.+|+.+| +|++|+..|++||+++|++..+ ||++|.||..+|++++|+.++++++++.
T Consensus 74 ~a~a~~NLG~AL~~lG--ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKG--RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4999999999999999 9999999999999999999865 9999999999999999999999999983
No 155
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.5e-05 Score=88.36 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPR---------------FVRALLRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~---------------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
+...--.|..|++.| +|..|+.-|.+|+..=.. -..+++++|.||.++++|..|+..++++|.
T Consensus 208 A~~~ke~Gn~~fK~g--k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEG--KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHhhhHHHhhc--hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 344566788899999 999999999998876321 135899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccch-hHHhhh
Q 004055 149 VEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPA-RPVGKK 211 (776)
Q Consensus 149 LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeA-rk~~KK 211 (776)
++|+|.-+++..+.++..+++++.|+..|.+ ++.|.+-.+..-+..|.....++... ++.+++
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 78899988777776666665555544 344444
No 156
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=7.8e-06 Score=95.54 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=60.3
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYE 137 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~d 137 (776)
..++|.++..+++.++.++|-. ...|+++|.|..+++ ++..|..+|...+.++|++..+|.+++.+|..+++-.
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq----~~~wf~~G~~ALqle--k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQ----LGTWFGLGCAALQLE--KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccc----hhHHHhccHHHHHHh--hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence 3455555555555555555543 444555555555555 5555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 138 MAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 138 eAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
+|...+..+++.+-.|..++.+...+....|.+++|+..+.
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 55555555555555555555555555555555555555443
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=3.9e-05 Score=89.36 Aligned_cols=136 Identities=14% Similarity=-0.012 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhh--CC
Q 004055 83 RAVFHSNRAACLMQMK-PINYETVIAECTMALQVQPRFVRALLRRARAFDAIG--------KYEMAMQDVQVLLGV--EP 151 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG--------r~deAl~d~~kAL~L--dP 151 (776)
.+.-++.+|.-|+..+ ++++..|+..+.+|++++|++..+|-.++.+|.... +...+...+.+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 3556777887777654 235889999999999999999999999999886642 345677777777774 88
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 152 NHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 152 ~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
.++.++..++.+....|++++|...+.+ .++| +..++..+|.++...|++++|...+.++...+|..
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 8899999999999999999999999988 6778 57899999999999999999999999999888886
No 158
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.13 E-value=0.00029 Score=65.47 Aligned_cols=162 Identities=26% Similarity=0.277 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHcCC---CCHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAA-CLMQMKPINYETVIAECTMALQVQP---RFVR 121 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~-cy~~LG~gdyeeAi~~~~kALeldP---~n~k 121 (776)
...+...|......+.|..++..+.+++...+.. .......+. ++..++ +++.|+..+.+++..+| ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 168 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELG--DYEEALELYEKALELDPELNELAE 168 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCccchHH
Confidence 3445555555555666666666666666655543 222233333 555555 66666666666655554 3444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHh
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLGVEPN-HRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAG 198 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~-N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~ 198 (776)
.++.++..+...++++.|+..+.+++...|. ....+..++.++...+.+..+...+.. ...|........++..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 5555555555566666666666666666666 455556666666666655555555544 2233333444444444444
Q ss_pred CCCccchhHHhhhhc
Q 004055 199 LGPCLPARPVGKKAG 213 (776)
Q Consensus 199 LG~~eeArk~~KKa~ 213 (776)
.+.+..+.....+..
T Consensus 249 ~~~~~~~~~~~~~~~ 263 (291)
T COG0457 249 LGRYEEALEALEKAL 263 (291)
T ss_pred cCCHHHHHHHHHHHH
Confidence 444555555555443
No 159
>PRK11906 transcriptional regulator; Provisional
Probab=98.13 E-value=2.7e-05 Score=88.12 Aligned_cols=133 Identities=9% Similarity=-0.105 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 004055 86 FHSNRAACLMQMK-PINYETVIAECTMAL---QVQPRFVRALLRRARAFDAI---------GKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 86 ay~n~A~cy~~LG-~gdyeeAi~~~~kAL---eldP~n~kAl~~rA~ay~aL---------Gr~deAl~d~~kAL~LdP~ 152 (776)
-++.+|..++..+ +.....|+..+.+|+ .++|.+..+|-.+|.|++.. ....+|.+..+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 3466777766554 335678899999999 99999999999999999765 2356799999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 153 HRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 153 N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
|+.++..++.++...++++.+...|++ .++|+.+.+++..|+++...|+.++|.....++...+|-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999999999999999999987 689999999999999999999999999999998877776
No 160
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.13 E-value=2.7e-05 Score=91.61 Aligned_cols=136 Identities=19% Similarity=0.136 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
..++...|..++..+ +-++|...+.+|-.++|..+..|+.+|.++...|++.+|...|..++.+||+++.....++.+
T Consensus 650 ~~lwllaa~~~~~~~--~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSG--NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 356777888888888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHH--HHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCCcc
Q 004055 164 RTALGPRQEAQQ--DLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGLLV 221 (776)
Q Consensus 164 l~~lg~~qeA~~--~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~~v 221 (776)
+...|+..-+.. .+.. +++|.++.+|+.+|.++..+|+..+|-.++..+....+..+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999998766665 4433 789999999999999999999999999999998766555433
No 161
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=1.7e-05 Score=92.76 Aligned_cols=173 Identities=12% Similarity=0.034 Sum_probs=137.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH--------------------
Q 004055 34 GVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAAC-------------------- 93 (776)
Q Consensus 34 ~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~c-------------------- 93 (776)
|.-...-++.++-..+-....+|...|+...|.....+-|+.+|+ +.+|..+|.+
T Consensus 412 GitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d-----~~lyc~LGDv~~d~s~yEkawElsn~~sar 486 (777)
T KOG1128|consen 412 GITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPD-----PRLYCLLGDVLHDPSLYEKAWELSNYISAR 486 (777)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-----chhHHHhhhhccChHHHHHHHHHhhhhhHH
Confidence 444455556666677777777888888888888888888884443 3333333332
Q ss_pred --------HHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 94 --------LMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 94 --------y~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
.+..+ +|.+|..+++..++++|-....||.+|.|..+++++..|..+|.+++.++|+|.+++.++..++.
T Consensus 487 A~r~~~~~~~~~~--~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 487 AQRSLALLILSNK--DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHhhccccccch--hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 12224 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhhC--CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 166 ALGPRQEAQQDLQSR--PSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 166 ~lg~~qeA~~~l~kk--l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
++++..+|...+... -+-.+...+-+.-.+....|.+++|....++-.
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999998888763 333445556666677889999999998887743
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.12 E-value=0.00034 Score=64.96 Aligned_cols=167 Identities=26% Similarity=0.165 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALR--LTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALk--LdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
.......+..+...+++..++..+..++. ..+.. ...+...+.++..++ ++..++..+..++..++.+....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 132 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNL----AEALLNLGLLLEALG--KYEEALELLEKALALDPDPDLAE 132 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch----HHHHHHHHHHHHHHh--hHHHHHHHHHHHHcCCCCcchHH
Confidence 46778888999999999999999999998 55554 788999999999999 99999999999999988876666
Q ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCC-CHHHHHHHHHHH
Q 004055 124 LRRAR-AFDAIGKYEMAMQDVQVLLGVEP---NHRDALEIARRLRTALGPRQEAQQDLQS--RPSPA-ALGASAVRGAPI 196 (776)
Q Consensus 124 ~~rA~-ay~aLGr~deAl~d~~kAL~LdP---~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~-~~~a~~~lA~~l 196 (776)
...+. ++...|+++.|...|.+++.++| ............+...++++.+...+.. ...+. ....+..++.++
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 133 ALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 66666 89999999999999999999888 3455555666667778899999998877 45566 578888999999
Q ss_pred HhCCCccchhHHhhhhcCCCCC
Q 004055 197 AGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~~s~P~ 218 (776)
...+++..|.....+.....|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcc
Confidence 9999999999999987765554
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=2.8e-05 Score=83.41 Aligned_cols=176 Identities=18% Similarity=0.120 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-
Q 004055 40 SIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK--THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ- 116 (776)
Q Consensus 40 ~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~--~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld- 116 (776)
+...+.+..|..-|+.+-..|+|.+|...|.++..+.-. ++...+..|.+.+.||.+. ++.+|+..+.+|+.+-
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999887532 2123567788888888776 7999999999999872
Q ss_pred -CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHhhC----
Q 004055 117 -PRF----VRALLRRARAFDAI-GKYEMAMQDVQVLLGVEPN--H----RDALEIARRLRTALGPRQEAQQDLQSR---- 180 (776)
Q Consensus 117 -P~n----~kAl~~rA~ay~aL-Gr~deAl~d~~kAL~LdP~--N----~~al~~la~ll~~lg~~qeA~~~l~kk---- 180 (776)
-+. ..++..+|.+|... |+++.|+..|++|+.+... . ...+..++.++..++++.+|+..|.+.
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 222 56899999999998 9999999999999987332 2 344567788899999999999999761
Q ss_pred CC-CC---CHH-HHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 181 PS-PA---ALG-ASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 181 l~-P~---~~~-a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.. +. +.. .++..+.|+...|++-.|+..+.+.....|.
T Consensus 186 l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 11 21 222 3345578899999999999999997755554
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=4e-05 Score=72.81 Aligned_cols=93 Identities=20% Similarity=0.108 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN---HRDALE 158 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~---N~~al~ 158 (776)
.+++++|.++-.+| +.++|+..|.+|+...... ..+++.+|.+|..+|++++|+..+++++.-.|+ +..+..
T Consensus 2 ~~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLG--REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 46899999999999 9999999999999986544 679999999999999999999999999999898 888888
Q ss_pred HHHHHHHHcCChHHHHHHHhh
Q 004055 159 IARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 159 ~la~ll~~lg~~qeA~~~l~k 179 (776)
.++.++..+|+.++|+..+-.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999997754
No 165
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=5e-05 Score=85.56 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 004055 59 NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEM 138 (776)
Q Consensus 59 kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~de 138 (776)
.++|+.|+..|++....+|.. ...+|.+++.++ +..+|++.++++|..+|.+...+...|..+...++++.
T Consensus 182 t~~~~~ai~lle~L~~~~pev-------~~~LA~v~l~~~--~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV-------AVLLARVYLLMN--EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH-------HHHHHHHHHhcC--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 456777777777777666652 234666666666 77777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 139 AMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 139 Al~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
|+...+++..+.|++...|+.++.+|..+|+++.|+..+..
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 77777777777777777777777777777777777665543
No 166
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=98.09 E-value=5.2e-06 Score=72.49 Aligned_cols=65 Identities=17% Similarity=0.338 Sum_probs=59.2
Q ss_pred cceeEeeccceeEEec-cCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHh
Q 004055 292 RPLKLVYDHDIRLGQM-PVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESA 356 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v-~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~ 356 (776)
+|+|...|.|+-|.+- |..++|+|+.+.|++..|....-...|.|||||.||+-||+|++--++.
T Consensus 3 IRIk~p~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRITVRSDeEm~AMlsy 68 (91)
T cd06395 3 IRIKIPNGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSY 68 (91)
T ss_pred EEEeCCCCCcccccccCcccccHHHHHHHHHHhcccccccceeeccccCCeeEecchHHHHHHHHH
Confidence 5889999999999885 6779999999999999999999999999999999999999999866643
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.09 E-value=1e-05 Score=69.31 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRL---TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL---dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
..+..+...|..++..|+|++|+..|++++++ .+..+++.+.++.++|.||..+| ++++|+..+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG--DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999987 33334457889999999999999 999999999999976
No 168
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.08 E-value=0.00019 Score=83.52 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.++.+.-+..++...|+|++|+.++.+....-.+. ..++-.+|.|++++| ++++|...|...|..||.|...|.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk----~~~~E~rA~ll~kLg--~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDK----LAVLEKRAELLLKLG--RKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35556666677777777777777776666555543 566677777777777 777777777777777777777766
Q ss_pred HHHHHH
Q 004055 125 RRARAF 130 (776)
Q Consensus 125 ~rA~ay 130 (776)
.+..|+
T Consensus 77 ~L~~~~ 82 (517)
T PF12569_consen 77 GLEEAL 82 (517)
T ss_pred HHHHHH
Confidence 666665
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.06 E-value=7.8e-05 Score=79.77 Aligned_cols=104 Identities=18% Similarity=0.093 Sum_probs=89.9
Q ss_pred HHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 004055 84 AVFHSNRAACL-MQMKPINYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDA 156 (776)
Q Consensus 84 A~ay~n~A~cy-~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~a 156 (776)
....+..|.++ +..| +|++|+..|...+...|++ +.++|.+|.+|+..|++++|+..|++++...|++ +++
T Consensus 142 e~~~Y~~A~~l~~~~~--~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKS--RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 35677788876 4567 9999999999999999998 5899999999999999999999999999998875 788
Q ss_pred HHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHH
Q 004055 157 LEIARRLRTALGPRQEAQQDLQS--RPSPAALGAS 189 (776)
Q Consensus 157 l~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~ 189 (776)
+..++.++..+|++..|...|.. +..|....+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 88899999999999999999976 4456665543
No 170
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.06 E-value=3.7e-05 Score=92.23 Aligned_cols=148 Identities=13% Similarity=-0.003 Sum_probs=121.5
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH----------------
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR---------------- 121 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k---------------- 121 (776)
.+++-..|+..|-++++++|+. +.+|..+|..|...- +...|...|++|.++||.+..
T Consensus 470 ~rK~~~~al~ali~alrld~~~----apaf~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSL----APAFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHH
Confidence 4456888999999999999986 889999999999988 889999999999999987532
Q ss_pred --------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--
Q 004055 122 --------------------ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS-- 179 (776)
Q Consensus 122 --------------------Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k-- 179 (776)
.+.++|..|..-+++..|+..|+.+|+.+|.+...+..++.+|..-|++..|...|.+
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 4556777777778888888888888888888888888888888888888888888866
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 180 RPSPAALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 180 kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
.++|.+.-..+..+.+.+.+|+|.+|...+..
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57787777777888888888888888766443
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=8e-05 Score=85.67 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
..++..-+.+-..++|++|+....+.|...|+. ..+....-.|++++. .|++|+.....-..+.-.+ ...|-+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd----~~a~~cKvValIq~~--ky~~ALk~ikk~~~~~~~~-~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDD----EDAIRCKVVALIQLD--KYEDALKLIKKNGALLVIN-SFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc----HhhHhhhHhhhhhhh--HHHHHHHHHHhcchhhhcc-hhhHHH
Confidence 577888888999999999999999999998886 566666777888888 8888884433322211111 122678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--C------------------------
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--R------------------------ 180 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--k------------------------ 180 (776)
|+|++++++.++|+.+++ .+++.+..++...+.++.+++++++|...|+. +
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 888888888888888887 66777777888888888888888888876654 1
Q ss_pred ------CCCC-CHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 181 ------PSPA-ALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 181 ------l~P~-~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
..|. .-...++.+.++...|+|.+|...+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1232 4456788999999999999999999998
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=1.6e-05 Score=90.09 Aligned_cols=114 Identities=25% Similarity=0.356 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Q 004055 39 SSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK-PINYETVIAECTMALQVQP 117 (776)
Q Consensus 39 ~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP 117 (776)
.-+.-+.++.++.+||-.|-.+.+..|+..|.++++..|.. ..+|.|+|.++|+.+ .|+...|+.+|..||++||
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~----~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA----IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch----hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 44566788899999999999999999999999999999986 899999999999875 4588899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 004055 118 RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA 156 (776)
Q Consensus 118 ~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a 156 (776)
...+|++++++|+..++++.+|+.+...+....|.+...
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 999999999999999999999999998888888866544
No 173
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.03 E-value=9.4e-05 Score=85.83 Aligned_cols=164 Identities=14% Similarity=-0.002 Sum_probs=143.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
|...++...-.++.++|+.+++++|+..|.+ ..+|..+|+++-+++ +.+.|...|...++.=|+.+..|+.++.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f----~Kl~lmlGQi~e~~~--~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDF----HKLWLMLGQIEEQME--NIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCch----HHHHHHHhHHHHHHH--HHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 4444555667788999999999999999997 899999999999999 9999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC------------------CC--------
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR------------------PS-------- 182 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk------------------l~-------- 182 (776)
+-...|..-.|...++++.--||.|...+....++-.+.|....|.....+. ..
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 9999999999999999999999999999999999999999988887655441 00
Q ss_pred ------CCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 183 ------PAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 183 ------P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
-.+++.+...|..++...+++.|+.++.+++...|.
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 235667777899999999999999999998866665
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.03 E-value=0.0003 Score=74.34 Aligned_cols=132 Identities=18% Similarity=0.191 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCC----------------CHHHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPI----------------NYETVIAEC 109 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~g----------------dyeeAi~~~ 109 (776)
.......|..+|+.++|..|+..|++.|++.|++ +....+++.+|.|++.++.+ ....|+..+
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 3447889999999999999999999999999985 67889999999998766421 125788999
Q ss_pred HHHHHcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCC
Q 004055 110 TMALQVQPRFV-----------------RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALEIARRLRTALGP 169 (776)
Q Consensus 110 ~kALeldP~n~-----------------kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~~la~ll~~lg~ 169 (776)
++.++..|+.. .--+..|+.|++.|.|..|+.-++.++.-.|+. .+++..+...+..+|.
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 99999999863 223456788999999999999999999999875 6778888899999999
Q ss_pred hHHHHHHHh
Q 004055 170 RQEAQQDLQ 178 (776)
Q Consensus 170 ~qeA~~~l~ 178 (776)
.++|.....
T Consensus 228 ~~~a~~~~~ 236 (243)
T PRK10866 228 NAQADKVAK 236 (243)
T ss_pred hHHHHHHHH
Confidence 998877554
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.99 E-value=0.00058 Score=72.36 Aligned_cols=163 Identities=19% Similarity=0.146 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH---HH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV---RA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~---kA 122 (776)
+..|+++|...++.|+|.+|+..|+......|.+ +....+...++.++++-+ +|+.|+...++-+.+.|.++ -+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-~~~~qa~l~l~yA~Yk~~--~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-PYSEQAQLDLAYAYYKNG--EYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCCChhHH
Confidence 7799999999999999999999999999999986 344678889999999999 99999999999999999775 47
Q ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCCHH---HHHH--------------HHHHHHHcCChHHHHHHH
Q 004055 123 LLRRARAFDAIG--------KYEMAMQDVQVLLGVEPNHRD---ALEI--------------ARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 123 l~~rA~ay~aLG--------r~deAl~d~~kAL~LdP~N~~---al~~--------------la~ll~~lg~~qeA~~~l 177 (776)
+|.+|.+++..= --..|+..|+.++..-|++.- +... +++.+.+.|.+..|+..+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 889999876542 245689999999999998853 3222 234444555555555544
Q ss_pred hh---C--CCCCCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 178 QS---R--PSPAALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 178 ~k---k--l~P~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
+. . -.+.-..++..+..+|..+|-.++|.+..+-
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 43 1 2245567888889999999999999887554
No 176
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.97 E-value=5.4e-05 Score=76.34 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 62 YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK--------PINYETVIAECTMALQVQPRFVRALLRRARAFDAI 133 (776)
Q Consensus 62 yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG--------~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aL 133 (776)
|+.|.+.|+.....+|.+ +..+++=|.+++.+- ...+++|+.-+.+||.++|+...|++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~nP~D----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678999999999999997 888888888877762 01567889999999999999999999999999887
Q ss_pred CC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 134 GK-----------YEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 134 Gr-----------~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
+. |++|..+|+++...+|+|..++..+..+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 65 88899999999999999998888777663
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00015 Score=79.38 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=113.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 55 KRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG 134 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG 134 (776)
.+..++||.+|+..++-.+.++... -.++...+|-|++.+| +|++|+..|.-+.+.+--+.+....+|-|++-+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EE---E~~~~lWia~C~fhLg--dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREE---EDSLQLWIAHCYFHLG--DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhh---hHHHHHHHHHHHHhhc--cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 3556788999998888887665543 2456677888999998 9999999998888877777888888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHH------------------------------HHHHHHHHHcCChHHHHHHHhh--CCC
Q 004055 135 KYEMAMQDVQVLLGVEPNHRDAL------------------------------EIARRLRTALGPRQEAQQDLQS--RPS 182 (776)
Q Consensus 135 r~deAl~d~~kAL~LdP~N~~al------------------------------~~la~ll~~lg~~qeA~~~l~k--kl~ 182 (776)
.|.+|...-.++ |.++--. ..++.++...-.+++|+..+.+ .-+
T Consensus 106 ~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999887765543 3333222 2233333333457778887766 344
Q ss_pred CCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 183 PAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 183 P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
|+....-..++.||+.+.-|+.++.+.+--...-|.+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 6666666778999999999999999988877666665
No 178
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=5.5e-05 Score=92.28 Aligned_cols=127 Identities=9% Similarity=-0.095 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR-------- 154 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~-------- 154 (776)
...++..+...|...+ ++++|+..|..++..+|+...+||.+|.+++..+++..+... .++.+-+.+.
T Consensus 30 n~~a~~~Li~~~~~~~--~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSEN--LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 3889999999999999 999999999999999999999999999999999988877655 6666666555
Q ss_pred -----------HHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 155 -----------DALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 155 -----------~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
.+++.++.|+..+|+.+++...+++ +.+|.++.+...+|..|... +.+.|+.++++++.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 9999999999999999999999988 78899999999999999999 99999999999763
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.94 E-value=0.00033 Score=71.65 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcC
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKP---------INYETVIAECTMALQVQ 116 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~---------gdyeeAi~~~~kALeld 116 (776)
.+.....|..+|..|+|..|+..|++-++..|+. +....+++.+|.|++.+.+ +...+|+..|...+...
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999999985 5778899999999887641 13458999999999999
Q ss_pred CCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCChHHHH
Q 004055 117 PRFV-----------------RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR---DALEIARRLRTALGPRQEAQ 174 (776)
Q Consensus 117 P~n~-----------------kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~---~al~~la~ll~~lg~~qeA~ 174 (776)
|++. .--+..|..|+..|.+..|+.-|+.+++-.|+.+ .++..+..++..+|..+.+.
T Consensus 121 P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 121 PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9863 2345568899999999999999999999999875 56777888888999877443
No 180
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2e-05 Score=86.07 Aligned_cols=133 Identities=26% Similarity=0.306 Sum_probs=115.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CCCChHHHHHHHHHHHHHcCCC
Q 004055 36 DLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK---------------THPDRAVFHSNRAACLMQMKPI 100 (776)
Q Consensus 36 d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~---------------~~~d~A~ay~n~A~cy~~LG~g 100 (776)
+.+....+..++..++.|+..|++++|..|...|.++++.... .......++.|++.|-++++
T Consensus 212 ~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~-- 289 (372)
T KOG0546|consen 212 DKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVK-- 289 (372)
T ss_pred ccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccccc--
Confidence 3444556788899999999999999999999999999986431 11235577899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPR 170 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~ 170 (776)
.+..|+..+..+++.++...++||+++..+..+.++++|++++..+....|++..+...+..+.....++
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888777665543
No 181
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=97.89 E-value=4.9e-05 Score=67.52 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=49.3
Q ss_pred ccceeEEec----cCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhc
Q 004055 299 DHDIRLGQM----PVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESAS 357 (776)
Q Consensus 299 ~~DiR~~~v----~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~ 357 (776)
+-+||-|.| ...-+|.+|...|++.|+ ...+.+-|+|.|||||-|-|++|+.+-+.-+
T Consensus 12 ~~~~rdi~vee~l~~~P~~kdLl~lmr~~f~-~~dIaLNYrD~EGDLIRllddeDv~LMV~~~ 73 (92)
T cd06399 12 ISTIRDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLIRLLSDEDVALMVRQS 73 (92)
T ss_pred CccccceEeecccccCccHHHHHHHHHHHhc-hhheeeeeecCCCCEEEEcchhhHHHHHHHH
Confidence 345565554 445589999999999999 6699999999999999999999999988665
No 182
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.87 E-value=3.4e-05 Score=83.93 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 88 SNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 88 ~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
--+|.-|++.| .|++||..|.+++.++|.|+..+.+||.+|+++.+|..|..+|..++.||-...-+|-..+.+...+
T Consensus 101 KE~GN~yFKQg--Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQG--KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhcc--chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45788899999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhh--CCCCCCHHHHHHHH
Q 004055 168 GPRQEAQQDLQS--RPSPAALGASAVRG 193 (776)
Q Consensus 168 g~~qeA~~~l~k--kl~P~~~~a~~~lA 193 (776)
|...+|...++. ++.|......-.++
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 999999998876 67888776554443
No 183
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.86 E-value=0.0012 Score=73.29 Aligned_cols=130 Identities=21% Similarity=0.172 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-CCHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP-RFVR 121 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP-~n~k 121 (776)
..+++....+|..-+..|+|..|.....++-+..+.. ..+|..-|.+--++| +++.|-.+..++-+.-+ ....
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p----~l~~l~aA~AA~qrg--d~~~an~yL~eaae~~~~~~l~ 154 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP----VLAYLLAAEAAQQRG--DEDRANRYLAEAAELAGDDTLA 154 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch----HHHHHHHHHHHHhcc--cHHHHHHHHHHHhccCCCchHH
Confidence 3578888889999999999999999999877765552 344444445556666 88888888888887733 3456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
+++.+++.+...|++..|...+.+++.+.|.++.++.+...++...|+++.....+.
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 777888888888888888888888888888888888888888888777766655443
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=97.85 E-value=0.00017 Score=71.93 Aligned_cols=101 Identities=7% Similarity=-0.105 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
-...+..|.-+++.| +|++|...|.-....+|.+++.++.+|-|+..+++|+.|+..|..+..++++|+...+..+.|
T Consensus 37 le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQG--RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 345566788888888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhhC-CCCCCH
Q 004055 164 RTALGPRQEAQQDLQSR-PSPAAL 186 (776)
Q Consensus 164 l~~lg~~qeA~~~l~kk-l~P~~~ 186 (776)
+..+|+...|+..|... ..|.+.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~~~~~ 138 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNERTEDE 138 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhCcchH
Confidence 99999999999998763 345443
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.84 E-value=3.5e-05 Score=92.47 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-------------CC-------------------hHHHHHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-------------PD-------------------RAVFHSNRAA 92 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-------------~d-------------------~A~ay~n~A~ 92 (776)
.|..|--.|..|..--|...|..+|++|..+|++.. ++ ....+..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 355677788888777799999999999999999762 00 0112333555
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004055 93 CLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQE 172 (776)
Q Consensus 93 cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qe 172 (776)
.|..-+ ++..|+.+++.||+.+|++..++..+|.+|...|++.-|+..|.++..++|.+..+.+..+.+...+|.+.+
T Consensus 571 yyLea~--n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAH--NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCcc--chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 555556 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 004055 173 AQQDLQS 179 (776)
Q Consensus 173 A~~~l~k 179 (776)
+...+..
T Consensus 649 ald~l~~ 655 (1238)
T KOG1127|consen 649 ALDALGL 655 (1238)
T ss_pred HHHHHHH
Confidence 9988765
No 186
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.78 E-value=0.00036 Score=81.17 Aligned_cols=161 Identities=17% Similarity=0.066 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
..+.+-..|..+...|+-++|..+-..+++.++.+ ..+|.-+|..+..-+ +|++||..|..||.++|+|...|.
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S----~vCwHv~gl~~R~dK--~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS----HVCWHVLGLLQRSDK--KYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCccc----chhHHHHHHHHhhhh--hHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34566778888888999999999999999988887 678888888888888 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh---CC--CCCCHH-----HHHHHHH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS---RP--SPAALG-----ASAVRGA 194 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k---kl--~P~~~~-----a~~~lA~ 194 (776)
.++....++++++.....-.+.|.+.|.+...|..++..+..+|.+..|...+.. .. .|.... .......
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998888889999999999999999988888888888875543 22 232222 2333466
Q ss_pred HHHhCCCccchhHHhhh
Q 004055 195 PIAGLGPCLPARPVGKK 211 (776)
Q Consensus 195 ~l~~LG~~eeArk~~KK 211 (776)
++...|.++.|.+...+
T Consensus 194 i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHcccHHHHHHHHHh
Confidence 67777777777766555
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.77 E-value=0.00013 Score=79.06 Aligned_cols=152 Identities=18% Similarity=0.077 Sum_probs=115.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
....|..++..|++++|+..+.+. .+ ..+...+..||+.++ +++.|...+...-+.+.+..-..+.-|.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-----~~----lE~~al~Vqi~L~~~--R~dlA~k~l~~~~~~~eD~~l~qLa~aw 173 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-----GS----LELLALAVQILLKMN--RPDLAEKELKNMQQIDEDSILTQLAEAW 173 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-----TC----HHHHHHHHHHHHHTT---HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-----Cc----ccHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 455667788888888888877654 22 566677788899988 9999999998888888877776666677
Q ss_pred HHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCc-c
Q 004055 129 AFDAIG--KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPC-L 203 (776)
Q Consensus 129 ay~aLG--r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~-e 203 (776)
+.+..| .+.+|.-.|+......|.++.++..++.++..+|++++|...+.. ..+|.++....++.-+...+|+. +
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 766666 588999999998777788888888899999999999999988876 56688888888888888888888 4
Q ss_pred chhHHhhh
Q 004055 204 PARPVGKK 211 (776)
Q Consensus 204 eArk~~KK 211 (776)
.+.++...
T Consensus 254 ~~~~~l~q 261 (290)
T PF04733_consen 254 AAERYLSQ 261 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 188
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.00016 Score=74.89 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 82 DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 82 d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
.++.+++-+|..|-.+| -..-|..++.++|.++|+-+.++..+|.-+..-|+|+.|.+.|+.++++||.+..++.+.+
T Consensus 63 eRA~l~fERGvlYDSlG--L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 63 ERAQLLFERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred HHHHHHHHhcchhhhhh--HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 47899999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHhh--CCCCCCHH
Q 004055 162 RLRTALGPRQEAQQDLQS--RPSPAALG 187 (776)
Q Consensus 162 ~ll~~lg~~qeA~~~l~k--kl~P~~~~ 187 (776)
..+...|++.-|...+.+ ..+|.+|-
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999988876 56676663
No 189
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.76 E-value=7.7e-05 Score=81.07 Aligned_cols=91 Identities=27% Similarity=0.346 Sum_probs=76.6
Q ss_pred ccceeEeeccceeEEeccCCCCHHHHHHHHHh--HCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccc
Q 004055 291 WRPLKLVYDHDIRLGQMPVNCSFKALREIVSK--RFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEAD 368 (776)
Q Consensus 291 ~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~--kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~ 368 (776)
..+||.+|+.||.+..+.+.++|.+|..-|++ +|-....|.+|+-|||||-+||+|+-+|..|+-+..
T Consensus 15 ~vrlka~y~g~i~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~---------- 84 (593)
T KOG0695|consen 15 RVRLKAHYGGDIFITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLAR---------- 84 (593)
T ss_pred cEEEEEeecCcEEEEeccCcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHH----------
Confidence 45889999999999999999999999999999 777778899999999999999999999999998871
Q ss_pred cCCCCCcEEEEEEecCCCCCCCchh
Q 004055 369 KSDSVGMLRLHIVDVSPEQEPPLLE 393 (776)
Q Consensus 369 ~~~~~g~~rL~v~e~~~~~~~~~~~ 393 (776)
......+-|+|.-..|++ |.+|.
T Consensus 85 -~~~d~el~ihvf~~~pe~-pglpc 107 (593)
T KOG0695|consen 85 -QCRDEELIIHVFPSTPEQ-PGLPC 107 (593)
T ss_pred -hccccceEEEEccCCCCC-CCCCC
Confidence 123455777777767764 55554
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.001 Score=67.76 Aligned_cols=146 Identities=21% Similarity=0.163 Sum_probs=81.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHH
Q 004055 54 NKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ-VQPRFVRALLRRARAFDA 132 (776)
Q Consensus 54 n~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-ldP~n~kAl~~rA~ay~a 132 (776)
..+-+.=|.+.++....+.+..-|+ ..-++.+|.....+| +|.+|...|.+++. +-..++..++.++++.+.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT-----vqnr~rLa~al~elG--r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT-----VQNRYRLANALAELG--RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh-----HHHHHHHHHHHHHhh--hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh
Confidence 3344444555555555555555555 234555666666666 66666666666654 234455566666666666
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCChHHHHHHHhhCCC-CCCHHHHHHHHHHHHhCCCccchh
Q 004055 133 IGKYEMAMQDVQVLLGVEPN--HRDALEIARRLRTALGPRQEAQQDLQSRPS-PAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 133 LGr~deAl~d~~kAL~LdP~--N~~al~~la~ll~~lg~~qeA~~~l~kkl~-P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
++++..|...+++..+.+|. .++....+++++...|++.+|...|...++ -..+.+...++..+..+|+..+|+
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 66666666666666666653 345555566666666666666655554211 113344444555556666555544
No 191
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.72 E-value=0.00041 Score=75.23 Aligned_cols=137 Identities=15% Similarity=0.055 Sum_probs=103.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
-..-.++...++++.|...+...-+.+.+. ..+...-|.+.+..|-..|.+|.-.|+......+.++..+..+|.|
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~----~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDS----ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCH----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 344567889999999999999988876653 3333333444555664479999999999888878899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH-HHHHHhh--CCCCCCHHHHH
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQE-AQQDLQS--RPSPAALGASA 190 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qe-A~~~l~k--kl~P~~~~a~~ 190 (776)
++.+|+|++|...+.+++..+|++++++.++..+...+|+..+ +.+.+.+ ...|.++....
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999999999999999999999998844 4445544 35677765433
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.67 E-value=0.0012 Score=74.71 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=102.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 004055 93 CLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQE 172 (776)
Q Consensus 93 cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qe 172 (776)
++...+ +|+.|+..+.+..+.+|. +.+.+++++...++..+|++.+.+++..+|.+..++...+..+...++++.
T Consensus 178 ~l~~t~--~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 178 YLSLTQ--RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHhhcc--cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 333445 999999999999988875 667789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 173 AQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 173 A~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
|+....+ ...|..-..|+.++.+|..+|+++.|...+-.
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9998877 68899999999999999999999999977654
No 193
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00012 Score=76.52 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=81.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004055 90 RAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP 169 (776)
Q Consensus 90 ~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~ 169 (776)
-|.+|+.-+ .|..|+..|.+||.++|..+..|-++|.||+++.+++.+..++++++.++|+..-+++.++.++.....
T Consensus 16 ~gnk~f~~k--~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 16 QGNKCFIPK--RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccccchh--hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 344555555 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhh
Q 004055 170 RQEAQQDLQS 179 (776)
Q Consensus 170 ~qeA~~~l~k 179 (776)
+.+++..+++
T Consensus 94 ~~eaI~~Lqr 103 (284)
T KOG4642|consen 94 YDEAIKVLQR 103 (284)
T ss_pred ccHHHHHHHH
Confidence 9999988765
No 194
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.61 E-value=0.0036 Score=78.82 Aligned_cols=160 Identities=12% Similarity=-0.011 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCCCH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRL--TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ----VQPRFV 120 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkL--dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe----ldP~n~ 120 (776)
..|......|.+.|++++|+..|.+.... .|+ ...|..+..+|.+.| ++++|...+..... +.| +.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-----~vTYnsLI~a~~k~G--~~deA~~lf~eM~~~~~gi~P-D~ 579 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-----RVVFNALISACGQSG--AVDRAFDVLAEMKAETHPIDP-DH 579 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhcCCCCC-cH
Confidence 34666667777888888888888777654 344 456777777777777 78888877777764 234 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHhh----CCCCCCHHHHHHHHHH
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVE-PNHRDALEIARRLRTALGPRQEAQQDLQS----RPSPAALGASAVRGAP 195 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld-P~N~~al~~la~ll~~lg~~qeA~~~l~k----kl~P~~~~a~~~lA~~ 195 (776)
..|..+-.+|.+.|++++|+..|+...+.+ +.+...+..+...+.+.|+.++|...|.. -..| +...+..+...
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a 658 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 566666677777788888888777777765 44666777777777777777777777655 1234 34556666667
Q ss_pred HHhCCCccchhHHhhhhcCC
Q 004055 196 IAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 196 l~~LG~~eeArk~~KKa~~s 215 (776)
+...|++++|..++......
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 77777777777776665543
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00049 Score=70.62 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=83.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 91 AACLMQMKPINYETVIAECTMALQVQPRF-----VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 91 A~cy~~LG~gdyeeAi~~~~kALeldP~n-----~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
|.-++..| +|.+|..-|..||.+=|.. +..|.++|-|+++++.++.|+.+|.++|.|+|.+.-++...+.+|.
T Consensus 102 GN~~F~ng--dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNG--DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcc--cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 45566777 9999999999999998865 4589999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhh--CCCCCCHH
Q 004055 166 ALGPRQEAQQDLQS--RPSPAALG 187 (776)
Q Consensus 166 ~lg~~qeA~~~l~k--kl~P~~~~ 187 (776)
.+..+++|+..|.+ ..+|..-.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHH
Confidence 99999999999977 45565443
No 196
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.59 E-value=0.0022 Score=78.61 Aligned_cols=166 Identities=18% Similarity=0.051 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP-DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR------ 118 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~-d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~------ 118 (776)
+......|..++..|+|++|...+.+++...+.... ....++.++|.++...| ++++|...+.+++.....
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHH
Confidence 444455788999999999999999999997665321 13456788899999999 999999999999976332
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHhhC------CCC-
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN--------HRDALEIARRLRTALGPRQEAQQDLQSR------PSP- 183 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~--------N~~al~~la~ll~~lg~~qeA~~~l~kk------l~P- 183 (776)
...++..+|.++...|+++.|...+.+++.+-.. ...++..++.++...|++++|...+... ..+
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 1346778899999999999999999999886321 2234556778888889999998877652 112
Q ss_pred CCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 184 AALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 184 ~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.....+..++.++...|+++.|.....++.
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234456678999999999999999887753
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.002 Score=65.76 Aligned_cols=128 Identities=18% Similarity=0.146 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--CHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR--FVRA 122 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~--n~kA 122 (776)
..+.-...|+.+...|+|.+|...|++++.-.=.. .+.++..+|.+.+.++ ++..|...++...+.+|. .+..
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~--~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQ--EFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhcCCccCCCCc
Confidence 45667889999999999999999999999843221 2778899999999999 999999999999999984 5788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
.+..|+.|..+|++..|...|+.++...|+ +.+....+..+..+|+..++...+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 899999999999999999999999999986 5666778888889998888776553
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.00087 Score=71.95 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC--C
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK--THPDRAVFHSNRAACLMQM-KPINYETVIAECTMALQVQP--R 118 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~--~~~d~A~ay~n~A~cy~~L-G~gdyeeAi~~~~kALeldP--~ 118 (776)
..+..|.+-++. +++.++.+|+..|++|+.+.-. .+...+.++.++|.+|... + +++.|+..|.+|+.+-. +
T Consensus 73 ~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 73 EAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--DYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp HHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCC
Confidence 445555554444 5555999999999999997432 1123467899999999888 7 99999999999998722 2
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHHHHcCChHHHHHHHhh--CCCCC
Q 004055 119 F----VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH----R---DALEIARRLRTALGPRQEAQQDLQS--RPSPA 184 (776)
Q Consensus 119 n----~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N----~---~al~~la~ll~~lg~~qeA~~~l~k--kl~P~ 184 (776)
. ..++...|.++..+|+|++|+..|+++....-++ . ..+.....|+...|+...|...+.. ...|.
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2 4678899999999999999999999998754322 1 2344566678888999999988876 44553
No 199
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.52 E-value=0.0067 Score=76.42 Aligned_cols=156 Identities=8% Similarity=-0.041 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CCCHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRL----TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ-PRFVRA 122 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkL----dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-P~n~kA 122 (776)
.|......+.+.|++++|...|.+.... .|+ ...|..+..+|.+.| ++++|...|+...+.+ +.+...
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-----~vTynaLI~ay~k~G--~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-----HITVGALMKACANAG--QVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCChHH
Confidence 4455555555666666666666655442 232 344555555555555 6666666666555554 234455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHhh--C-CCCCCHHHHHHHHHHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGV--EPNHRDALEIARRLRTALGPRQEAQQDLQS--R-PSPAALGASAVRGAPIA 197 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~L--dP~N~~al~~la~ll~~lg~~qeA~~~l~k--k-l~P~~~~a~~~lA~~l~ 197 (776)
|..+..+|.+.|++++|+..|...... .|+ ...+..+...+...|+.++|...+.. + --+.+...+..+..+|+
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 555555555566666666655555543 332 33444455555555555555555443 1 11223444455555555
Q ss_pred hCCCccchhHHhhh
Q 004055 198 GLGPCLPARPVGKK 211 (776)
Q Consensus 198 ~LG~~eeArk~~KK 211 (776)
..|++++|...++.
T Consensus 696 k~G~~eeA~~lf~e 709 (1060)
T PLN03218 696 NAKNWKKALELYED 709 (1060)
T ss_pred hCCCHHHHHHHHHH
Confidence 55555555555554
No 200
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.49 E-value=0.0026 Score=76.46 Aligned_cols=160 Identities=11% Similarity=-0.082 Sum_probs=82.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--CCCCHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--QPRFVRALLRR 126 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--dP~n~kAl~~r 126 (776)
+....+.|.+.|++++|...|++..+ |+ ...|..+..+|.+.| ++++|+..+.+.+.. .| +...|..+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~--~d-----~~t~n~lI~~y~~~G--~~~~A~~lf~~M~~~g~~P-d~~T~~~l 432 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR--KN-----LISWNALIAGYGNHG--RGTKAVEMFERMIAEGVAP-NHVTFLAV 432 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC--CC-----eeeHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCC-CHHHHHHH
Confidence 34455556666666666666665432 22 334555666666666 666666666665543 23 23444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccc
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEP--NHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLP 204 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP--~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~ee 204 (776)
-.++...|.+++|...|+...+..+ .+...+..+..++.+.|+.++|...+.+.+...+...|..+...+...|+++.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 5555566666666666665543211 12334455555555566666665555443222233334444444555555555
Q ss_pred hhHHhhhhcCCCCC
Q 004055 205 ARPVGKKAGAPAGG 218 (776)
Q Consensus 205 Ark~~KKa~~s~P~ 218 (776)
|+...++.....|.
T Consensus 513 a~~~~~~l~~~~p~ 526 (697)
T PLN03081 513 GRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHHHHHhCCCCC
Confidence 55555554444443
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.00011 Score=81.60 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------CCCC
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV------QPRF 119 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------dP~n 119 (776)
.-++-.+|..+++.|++...+.+|+.||+.-..+-..+..+|+.+|.+|+.++ +|.+|+.+-.-=|.+ .-.-
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~--DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK--DYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh--hHHHHHhhhhhhHHHHHHhcchhcc
Confidence 56778899999999999999999999999866542235567888888888888 888887753322221 1123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHc
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEP------NHRDALEIARRLRTAL 167 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP------~N~~al~~la~ll~~l 167 (776)
+++--++|..+--+|.|++|+.++.+-|.+.. ....++++++.+|...
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak 148 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK 148 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence 44455566666666666666666655554322 1133455555555543
No 202
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.46 E-value=0.0032 Score=75.64 Aligned_cols=152 Identities=16% Similarity=-0.008 Sum_probs=124.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ-PRFVRALLRRARA 129 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-P~n~kAl~~rA~a 129 (776)
...+.|.+.|++++|...|++. .+.+ ...|..+...|.+.| ++++|+..|.+..... .-+...|..+..+
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m---~~~~----~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGM---PEKT----TVAWNSMLAGYALHG--YSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC---CCCC----hhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3457788999999999999764 2333 567888999999998 9999999998887643 2256678888899
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHH
Q 004055 130 FDAIGKYEMAMQDVQVLLGVE-PNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPV 208 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~Ld-P~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~ 208 (776)
+..+|++++|.+.+...++.. +.|..++..+...+.+.|+.++|...|..-..| +...|..+...|...|+.++|...
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999998876 567788888899999999999999999875555 456677888889999999999999
Q ss_pred hhhh
Q 004055 209 GKKA 212 (776)
Q Consensus 209 ~KKa 212 (776)
+++-
T Consensus 414 f~~M 417 (697)
T PLN03081 414 FERM 417 (697)
T ss_pred HHHH
Confidence 8884
No 203
>PLN03077 Protein ECB2; Provisional
Probab=97.44 E-value=0.0034 Score=77.22 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCCCHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRL--TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---QPRFVRA 122 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkL--dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---dP~n~kA 122 (776)
.|......|.+.|++++|+..|++.++. .|+ ...|..+-.++.+.| .+++|...++..... .| +...
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~~g--~v~ea~~~f~~M~~~~gi~P-~~~~ 627 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-----EVTFISLLCACSRSG--MVTQGLEYFHSMEEKYSITP-NLKH 627 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----cccHHHHHHHHhhcC--hHHHHHHHHHHHHHHhCCCC-chHH
Confidence 4556667778888888888888877763 343 233455555667777 888888888877643 33 4567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCC
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLG 200 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG 200 (776)
|..+..+|.+.|++++|...+++. .+.|+ ..+|..+-..+..-++.+.+.....+ .+.|.+...+.+++.+|...|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 788888888888888888888764 35554 44555555555556666665554444 577888888888888999999
Q ss_pred CccchhHHhhhh
Q 004055 201 PCLPARPVGKKA 212 (776)
Q Consensus 201 ~~eeArk~~KKa 212 (776)
++++|.+..+.-
T Consensus 706 ~~~~a~~vr~~M 717 (857)
T PLN03077 706 KWDEVARVRKTM 717 (857)
T ss_pred ChHHHHHHHHHH
Confidence 999888887663
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0003 Score=78.19 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCC
Q 004055 44 KRAHELKEEGNKRFQNKD--------------------YVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPIN 101 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGd--------------------yeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gd 101 (776)
-.+.+|++.|++|..+|+ ++.|+.+|..-|.+.....+ ....+|-|+|..|+-+| +
T Consensus 133 ~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLG--d 210 (639)
T KOG1130|consen 133 LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLG--D 210 (639)
T ss_pred hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeec--c
Confidence 356778999999887764 46788888888887554311 12357888899999999 9
Q ss_pred HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCC
Q 004055 102 YETVIAECTMALQVQPRF------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEP--NH----RDALEIARRLRTALGP 169 (776)
Q Consensus 102 yeeAi~~~~kALeldP~n------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP--~N----~~al~~la~ll~~lg~ 169 (776)
|+.||..-..-|++...+ -.|+.++|.||..+|+|+.|+++|.+.+.+.- .| ...-+.++..+..+.+
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e 290 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKE 290 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHH
Confidence 999999887777764433 46899999999999999999999999876532 23 2334567778888889
Q ss_pred hHHHHHHHhhC------C--CCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 170 RQEAQQDLQSR------P--SPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 170 ~qeA~~~l~kk------l--~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
++.|+.+..+- + .-...++.+.+|.++..+|..+.|..+..+..
T Consensus 291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999887761 1 13456788999999999999999998877654
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00035 Score=54.25 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456677777777777777777777777777777777666654
No 206
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.37 E-value=0.00023 Score=80.59 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
+-+.|.-++.-+ .|+.|+..|.+||+++|+++..+-.|+.++.++++|..|+.|+.++++++|...-++...+.+..+
T Consensus 7 ~k~ean~~l~~~--~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 7 LKNEANEALKDK--VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhHHhhhcccc--hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 345566666777 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhh--CCCCCCHHHHHHHHHHHH
Q 004055 167 LGPRQEAQQDLQS--RPSPAALGASAVRGAPIA 197 (776)
Q Consensus 167 lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~ 197 (776)
++++.+|...|++ ...|+.+.+......|-.
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999987 678999887766654443
No 207
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=97.37 E-value=0.0011 Score=58.27 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=59.8
Q ss_pred eEeeccceeEEeccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCC--CeeeecChHHHHHHHHhcccccccCcccccCC
Q 004055 295 KLVYDHDIRLGQMPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDG--DLVTITCTAELRLAESASDSLMTKEPEADKSD 371 (776)
Q Consensus 295 K~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDG--DlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~ 371 (776)
-|||- =+-.+.+|...+|.+|+++|.+||+.. ...++.|+++++ .+|.|+-+++++-|-..+
T Consensus 2 ~Vh~~-fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v-------------- 66 (78)
T cd06411 2 TVQCA-FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDV-------------- 66 (78)
T ss_pred EEEEE-EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhc--------------
Confidence 34542 244455799999999999999999965 449999998777 588888799999999888
Q ss_pred CCCcEEEEEEe
Q 004055 372 SVGMLRLHIVD 382 (776)
Q Consensus 372 ~~g~~rL~v~e 382 (776)
..|.+.||+++
T Consensus 67 ~~~~ltLwcq~ 77 (78)
T cd06411 67 ADGPRGLQLQC 77 (78)
T ss_pred cCCceEEEEec
Confidence 78999999985
No 208
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0018 Score=71.23 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=113.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------------HHcCC
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA--------------LQVQP 117 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kA--------------LeldP 117 (776)
.|.++|..|+|++|+..|+-+...+..+ +.+..|+|-|++.+| .|.+|.....+| .+++.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg--~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLG--QYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHH--HHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 5889999999999999999988865544 788999999999999 999998755443 22221
Q ss_pred C------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCC
Q 004055 118 R------------FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSP 183 (776)
Q Consensus 118 ~------------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P 183 (776)
. ...-.+.+|.+++..-.|.+|+..|.++|.-+|+...+...++.|+.++.-++-+.+.+.. +.-|
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 0 1233456677777778899999999999999999999999999999999888777776655 5568
Q ss_pred CCHHHHHHHHHHHHhCC
Q 004055 184 AALGASAVRGAPIAGLG 200 (776)
Q Consensus 184 ~~~~a~~~lA~~l~~LG 200 (776)
++.-+..+++-.++++=
T Consensus 217 dStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLI 233 (557)
T ss_pred CcHHHHHHHHHHHhhhh
Confidence 88888888877776643
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0045 Score=59.29 Aligned_cols=99 Identities=21% Similarity=0.141 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----C-------------ChHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-----P-------------DRAVFHSNRAACLMQMKPINYETVIA 107 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-----~-------------d~A~ay~n~A~cy~~LG~gdyeeAi~ 107 (776)
-..+...|......++...++..|.+++.+..... . ....+...++.++...| +++.|+.
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~--~~~~a~~ 83 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAG--DYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CHHHHHH
Confidence 34556678888899999999999999999876531 0 02233444455555566 7777777
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 108 ECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 108 ~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
.|.+++..+|.+-.++..+-.+|...|+...|+..|+++
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 777777777777777777777777777777777776665
No 210
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.33 E-value=0.00033 Score=50.85 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
.+|+.+|.+|..+|++++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45555555555555555555555555555554
No 211
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00094 Score=72.00 Aligned_cols=149 Identities=14% Similarity=0.139 Sum_probs=112.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 55 KRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG 134 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG 134 (776)
.+.+..+|.+|++...--....|.+ -..+..+|.||+... +|..|...|.+.-.+.|...+..+-.|..++..+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~----rAgLSlLgyCYY~~Q--~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRS----RAGLSLLGYCYYRLQ--EFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 3467788999999999999999976 567889999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHHhh
Q 004055 135 KYEMAMQDVQVLLGVEPNHRDALEI----ARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVGK 210 (776)
Q Consensus 135 r~deAl~d~~kAL~LdP~N~~al~~----la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~~K 210 (776)
.+..|++.+..... ++..+.. -+.++..-+++..+.....+.+..+.+......|-+++..|+|++|.+.+.
T Consensus 93 i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 93 IYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred ccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 99999987665432 2333222 233333345555565555555555566666777777777777777776666
Q ss_pred hhc
Q 004055 211 KAG 213 (776)
Q Consensus 211 Ka~ 213 (776)
.+.
T Consensus 169 aAl 171 (459)
T KOG4340|consen 169 AAL 171 (459)
T ss_pred HHH
Confidence 654
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0046 Score=66.13 Aligned_cols=103 Identities=22% Similarity=0.149 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALEIA 160 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~~l 160 (776)
.|+.|.-+++.| +|..|...|..-+...|+. +.|+|-+|.+++..|+|+.|...|..+++-.|.+ +++++-+
T Consensus 144 ~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSG--DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 788999999999 9999999999999999976 5799999999999999999999999999998876 6889999
Q ss_pred HHHHHHcCChHHHHHHHhh--CCCCCCHHHHHH
Q 004055 161 RRLRTALGPRQEAQQDLQS--RPSPAALGASAV 191 (776)
Q Consensus 161 a~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~ 191 (776)
+.++..+++.+.|...|.+ +.-|....+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999998877 445766665443
No 213
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=97.23 E-value=0.0022 Score=55.76 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=66.3
Q ss_pred cceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCC
Q 004055 292 RPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSD 371 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~ 371 (776)
.|||+-|..+-|.|++|.-+-|.||..+|...|+ ..+-|.|-. ..=+|.|.+|+||+-|++..|. ..
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afG--q~mdl~ytn-~eL~iPl~~Q~DLDkAie~ld~----------s~ 67 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFG--QPMDLHYTN-NELLIPLKNQEDLDRAIELLDR----------SP 67 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeEEEec-ccEEEeccCHHHHHHHHHHHcc----------Cc
Confidence 3799999999999999999999999999999998 568888887 4488999999999999988732 24
Q ss_pred CCCcEEEEEE
Q 004055 372 SVGMLRLHIV 381 (776)
Q Consensus 372 ~~g~~rL~v~ 381 (776)
.+..+||.+.
T Consensus 68 ~~ksLRilL~ 77 (79)
T cd06405 68 HMKSLRILLS 77 (79)
T ss_pred cccceeEeEe
Confidence 5777888765
No 214
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.22 E-value=0.00049 Score=49.90 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF 119 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n 119 (776)
+.+|+++|.||+.+| +|++|+..|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG--DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCcCC
Confidence 356788888888888 8888888888888888863
No 215
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.20 E-value=0.012 Score=72.37 Aligned_cols=162 Identities=19% Similarity=0.146 Sum_probs=79.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC-----CH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTH----PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR-----FV 120 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~----~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~-----n~ 120 (776)
...|..++..|+++.|...+.+++.+..... +....++..+|.++...| ++++|...+.+++.+... ..
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA--RLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhHHhhhccCchHHH
Confidence 3445555556666666666666555422110 111233445555555555 666666666666554211 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH----HHHHHHHHcCChHHHHHHHhhCCCCC--CH----H
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR---DALE----IARRLRTALGPRQEAQQDLQSRPSPA--AL----G 187 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~---~al~----~la~ll~~lg~~qeA~~~l~kkl~P~--~~----~ 187 (776)
.++..+|.++...|+++.|...+.+++.+.+... .... .....+...|+.+.+...+.....+. .. .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 4455556666666666666666666655432210 0000 01122233455555555544321111 11 1
Q ss_pred HHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 188 ASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 188 a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
....++.++..+|++++|...+.++.
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 13456677777777777777766654
No 216
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.01 Score=65.05 Aligned_cols=157 Identities=10% Similarity=-0.070 Sum_probs=124.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCCCHH---HHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV-QPRFVR---ALL 124 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel-dP~n~k---Al~ 124 (776)
....+-.++.+|++.+|...+++.|+-.|++ -.+.-..-.+|..+| +...-...+.+.+-. +|+.+. ..-
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtD----lla~kfsh~a~fy~G--~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTD----LLAVKFSHDAHFYNG--NQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchh----hhhhhhhhhHHHhcc--chhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 3445667899999999999999999999986 223333345666777 888888888888876 666543 444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCC------CHHHHHHHHHHHHh
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPA------ALGASAVRGAPIAG 198 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~------~~~a~~~lA~~l~~ 198 (776)
..+.++...|-|++|....++++++||.+..+....++++.-.++..++.+...+..+.. ....|.-.+.++..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 567788999999999999999999999999999999999999999999999887743221 12344556888899
Q ss_pred CCCccchhHHhhh
Q 004055 199 LGPCLPARPVGKK 211 (776)
Q Consensus 199 LG~~eeArk~~KK 211 (776)
-+.|+.|...+.+
T Consensus 260 ~aeye~aleIyD~ 272 (491)
T KOG2610|consen 260 GAEYEKALEIYDR 272 (491)
T ss_pred ccchhHHHHHHHH
Confidence 9999999988776
No 217
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.19 E-value=0.00079 Score=48.40 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N 153 (776)
.+++.+|.+|+.+|++++|+..|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666654
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.15 E-value=0.0043 Score=60.17 Aligned_cols=88 Identities=23% Similarity=0.272 Sum_probs=76.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 004055 90 RAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH----RDALEIARRLRT 165 (776)
Q Consensus 90 ~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N----~~al~~la~ll~ 165 (776)
.|.+...-| +.+.|+.-|.++|.+-|..+.+|.++|.++.-.|+.++|+.++++++++.-.- -.++...+.++.
T Consensus 49 ~~valaE~g--~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAG--DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhcc--chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 455556667 99999999999999999999999999999999999999999999999996543 234566788889
Q ss_pred HcCChHHHHHHHhh
Q 004055 166 ALGPRQEAQQDLQS 179 (776)
Q Consensus 166 ~lg~~qeA~~~l~k 179 (776)
.+|+.+.|...|..
T Consensus 127 l~g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 127 LLGNDDAARADFEA 140 (175)
T ss_pred HhCchHHHHHhHHH
Confidence 99999999998876
No 219
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.003 Score=73.15 Aligned_cols=119 Identities=15% Similarity=0.007 Sum_probs=98.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 004055 92 ACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQ 171 (776)
Q Consensus 92 ~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~q 171 (776)
.+.+....++|++|...|++.|...|+...++...-.|+.++++|++|+.+.++-..+.-.+... +..+.|..+++..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLD 96 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHH
Confidence 34444445599999999999999999999999999999999999999996665544434333322 67788999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 172 EAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 172 eA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
+|+..+. ..++.+.....+++.+++.+|+|++|...+..-
T Consensus 97 ealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 97 EALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred HHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999887 566677778999999999999999999998874
No 220
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.11 E-value=0.0065 Score=57.90 Aligned_cols=103 Identities=17% Similarity=0.325 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPD--------RAVFHSNRAACLMQMKPINYETVIAECTMALQV- 115 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d--------~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel- 115 (776)
.+......|...++.|.|++|...|.+|..+..+-|+. .+-+|..++.++..+| +|++++....+||..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lg--ry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLG--RYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHH
Confidence 34455678888999999999999999999986654431 4678889999999999 999999999888854
Q ss_pred ------CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 116 ------QPR----FVRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 116 ------dP~----n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
+.+ ++.+.+.+|.++..+|+.++|+..|+.+-++
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 332 4678899999999999999999999988654
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.04 E-value=0.0007 Score=50.19 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=23.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004055 109 CTMALQVQPRFVRALLRRARAFDAIGKYEMAM 140 (776)
Q Consensus 109 ~~kALeldP~n~kAl~~rA~ay~aLGr~deAl 140 (776)
|.+||+++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777777777777777777777777777765
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.04 E-value=0.0012 Score=51.11 Aligned_cols=43 Identities=14% Similarity=-0.023 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
.+++.+|.+|..+| ++++|+..|+++++.+|+++.+++.+|.+
T Consensus 2 ~~~~~la~~~~~~G--~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLG--QPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 46788999999999 99999999999999999999999888753
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.99 E-value=0.014 Score=57.23 Aligned_cols=84 Identities=21% Similarity=0.130 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR---DAL 157 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~---~al 157 (776)
+..++..|.-.++.| +|.+|+..+.......|-. ..+.+.+|.+|+..+++++|+..+++.++|+|.++ .++
T Consensus 10 ~~~ly~~a~~~l~~~--~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQKG--NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 667888999999999 9999999999999988754 68999999999999999999999999999999985 456
Q ss_pred HHHHHHHHHcCC
Q 004055 158 EIARRLRTALGP 169 (776)
Q Consensus 158 ~~la~ll~~lg~ 169 (776)
+..+.+...+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 666666665543
No 224
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0041 Score=67.25 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------------
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMAL-------------- 113 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL-------------- 113 (776)
.+...|-++|..++|..|..+|.+.-.+.|.. +...+..|+.+++.+ .|..|++......
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~----~qYrlY~AQSLY~A~--i~ADALrV~~~~~D~~~L~~~~lqLqa 119 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPEL----EQYRLYQAQSLYKAC--IYADALRVAFLLLDNPALHSRVLQLQA 119 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH----HHHHHHHHHHHHHhc--ccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56778999999999999999999999999986 777777788877777 6776665443221
Q ss_pred ----------------HcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004055 114 ----------------QVQP--RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQ 175 (776)
Q Consensus 114 ----------------eldP--~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~ 175 (776)
+.-| +........|-++++-|+++.|++-|+.++...--++-.-++++.++.+.+++..|+.
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 2223 4567788889889999999999999999999999999999999999999999999998
Q ss_pred HHhhC------CCCC-------------------------CHHHHHHHHHHHHhCCCccchhHHh
Q 004055 176 DLQSR------PSPA-------------------------ALGASAVRGAPIAGLGPCLPARPVG 209 (776)
Q Consensus 176 ~l~kk------l~P~-------------------------~~~a~~~lA~~l~~LG~~eeArk~~ 209 (776)
..... ..|. -..+..+.+.+++++++++.|+..+
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 77541 1111 1124556688899999998887554
No 225
>PLN03077 Protein ECB2; Provisional
Probab=96.97 E-value=0.023 Score=70.03 Aligned_cols=153 Identities=8% Similarity=-0.049 Sum_probs=111.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 004055 54 NKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--QPRFVRALLRRARAFD 131 (776)
Q Consensus 54 n~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--dP~n~kAl~~rA~ay~ 131 (776)
+.|.+.|++++|...|... .|+ ...|..+..+|.+.| +.++|+..|++..+. .|+ ...|..+-.++.
T Consensus 532 ~~y~k~G~~~~A~~~f~~~---~~d-----~~s~n~lI~~~~~~G--~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~ 600 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH---EKD-----VVSWNILLTGYVAHG--KGSMAVELFNRMVESGVNPD-EVTFISLLCACS 600 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc---CCC-----hhhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHh
Confidence 6677888999998888875 333 567888888888888 999999999987764 454 344555556788
Q ss_pred HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCChHHHHHHHhh-CCCCCCHHHHHHHHHHHHhCCCccchhH
Q 004055 132 AIGKYEMAMQDVQVLLGV---EPNHRDALEIARRLRTALGPRQEAQQDLQS-RPSPAALGASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~L---dP~N~~al~~la~ll~~lg~~qeA~~~l~k-kl~P~~~~a~~~lA~~l~~LG~~eeArk 207 (776)
..|++++|...|+..... .| +...+..+..++.+.|+.++|...+.. ...|+ ...|..+-..+...|+.+.++.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd-~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPD-PAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHH
Confidence 889999999999887743 34 456778888888899999999988877 34554 4444444345566788888887
Q ss_pred HhhhhcCCCCCC
Q 004055 208 VGKKAGAPAGGL 219 (776)
Q Consensus 208 ~~KKa~~s~P~~ 219 (776)
..++.....|..
T Consensus 679 ~a~~l~~l~p~~ 690 (857)
T PLN03077 679 AAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhhCCCC
Confidence 777766555553
No 226
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.90 E-value=0.002 Score=46.24 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRF 119 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n 119 (776)
.+++.+|.+|+.+| +|++|+..|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~--~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG--NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHHCcCC
Confidence 45666777777776 7777777777777777654
No 227
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0047 Score=67.63 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=96.4
Q ss_pred HCCCHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHH
Q 004055 58 QNKDYVGALEQYDNALRLTPK--THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR----FVRALLRRARAFD 131 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~--~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~----n~kAl~~rA~ay~ 131 (776)
.-|++..-...+ ++|+.+|. .+...+.-|---|.-|++-+ +|..|+..|.++|..... +...|.+||-|.+
T Consensus 54 ~~gd~~~~~~~L-qslK~da~E~ep~E~Aen~KeeGN~~fK~K--ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~ 130 (390)
T KOG0551|consen 54 SEGDPNPDNVCL-QSLKADAEEGEPHEQAENYKEEGNEYFKEK--RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL 130 (390)
T ss_pred CCCCCCccHHHH-HHhhhccccCChHHHHHHHHHHhHHHHHhh--hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH
Confidence 345553333333 34555542 22346777888899999999 999999999999998654 3567999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 132 AIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.+|+|..|+.++.+++.++|.+.-++..-+.|+..+.++..|..+...
T Consensus 131 ~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 131 YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998888887765
No 228
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.83 E-value=0.086 Score=59.10 Aligned_cols=167 Identities=16% Similarity=0.092 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.|..-+...-++||++.|=.+..++-++.++. .-..+..++......| +|+.|......+++..|.++.++....
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~---~l~v~ltrarlll~~~--d~~aA~~~v~~ll~~~pr~~~vlrLa~ 194 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDD---TLAVELTRARLLLNRR--DYPAARENVDQLLEMTPRHPEVLRLAL 194 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCc---hHHHHHHHHHHHHhCC--CchhHHHHHHHHHHhCcCChHHHHHHH
Confidence 44555555566666666666666666653332 1233444444444444 666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------------------------------------------CCCHHHHHHHHHHHH
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVE------------------------------------------PNHRDALEIARRLRT 165 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~Ld------------------------------------------P~N~~al~~la~ll~ 165 (776)
++|..+|++...+....+.-+-. .+++.+...++.-+.
T Consensus 195 r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li 274 (400)
T COG3071 195 RAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI 274 (400)
T ss_pred HHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH
Confidence 66666666665555444332111 133455555555555
Q ss_pred HcCChHHHHHHHhh---------------------------------CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 166 ALGPRQEAQQDLQS---------------------------------RPSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 166 ~lg~~qeA~~~l~k---------------------------------kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
.+|+.++|...... +..|+++..+..+|..+...+.+.+|+.+++.+
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555543322 134666777777788888888888888888877
Q ss_pred cCCCCCC
Q 004055 213 GAPAGGL 219 (776)
Q Consensus 213 ~~s~P~~ 219 (776)
.+..|..
T Consensus 355 l~~~~s~ 361 (400)
T COG3071 355 LKLRPSA 361 (400)
T ss_pred HhcCCCh
Confidence 7666654
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.057 Score=58.63 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH--HHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV--RALLR 125 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~--kAl~~ 125 (776)
....++..+...+++.+|...|..++...|.+ ..+...+|.||..+| +.+.|...+.. .|... +.+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g--~~e~A~~iL~~----lP~~~~~~~~~~ 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAG--DVEAAQAILAA----LPLQAQDKAAHG 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcC--ChHHHHHHHHh----CcccchhhHHHH
Confidence 45778889999999999999999999999998 788899999999999 99888776654 33321 11111
Q ss_pred ---HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh----CCCCCCHHHHHHHHHHHHh
Q 004055 126 ---RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS----RPSPAALGASAVRGAPIAG 198 (776)
Q Consensus 126 ---rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k----kl~P~~~~a~~~lA~~l~~ 198 (776)
+-..+.+.....+. .++.+.+..||+|.++.+.++..+...|+.+.|...+-. ...-.+...+-.+-.++..
T Consensus 206 l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 206 LQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 22334444433332 356677889999999999999999999999999987654 2223334444444455555
Q ss_pred CCCccchh
Q 004055 199 LGPCLPAR 206 (776)
Q Consensus 199 LG~~eeAr 206 (776)
.|.-+++-
T Consensus 285 ~g~~Dp~~ 292 (304)
T COG3118 285 FGPADPLV 292 (304)
T ss_pred cCCCCHHH
Confidence 66554443
No 230
>PRK10941 hypothetical protein; Provisional
Probab=96.70 E-value=0.014 Score=62.92 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
+.....|+-.+|++.+ +++.|+..++..+.++|+++.-+..||.+|.++|.+..|..|++..++..|+++.+......
T Consensus 180 l~Rml~nLK~~~~~~~--~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 180 IRKLLDTLKAALMEEK--QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4467888899999999 99999999999999999999999999999999999999999999999999999988766655
Q ss_pred HHH
Q 004055 163 LRT 165 (776)
Q Consensus 163 ll~ 165 (776)
+..
T Consensus 258 l~~ 260 (269)
T PRK10941 258 IHS 260 (269)
T ss_pred HHH
Confidence 543
No 231
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.68 E-value=0.0011 Score=72.57 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 99 PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 99 ~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
.|+++.||..|..||.++|.....|-.||.+|..|++...|+++|..++.++|+...-+...+.++..+|.+.+|..++.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred h
Q 004055 179 S 179 (776)
Q Consensus 179 k 179 (776)
.
T Consensus 207 ~ 207 (377)
T KOG1308|consen 207 L 207 (377)
T ss_pred H
Confidence 5
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.024 Score=60.63 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HcCC--CCHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMAL----QVQP--RFVRALLR 125 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL----eldP--~n~kAl~~ 125 (776)
..+.+...|.|.-.+..|.+.++.+|.. .+.+...++.+.|+.| +...|-.+++.+- .++- .+..++.+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~---~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQ---EPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcc---cHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3444555666666666666666655432 2455555666666666 6666666665322 1221 23344455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.+.+|...++|..|...|.+++..||.++.+..+.+.|+..+|+..+|+..++.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEA 311 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666666666666666666666666666666666665544
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.49 E-value=0.061 Score=61.94 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=100.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC---------------
Q 004055 54 NKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR--------------- 118 (776)
Q Consensus 54 n~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~--------------- 118 (776)
....+.++...-+..-.+||+++|+. +++|..+|.=... ...+|...+.+|++....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdC----AdAYILLAEEeA~----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDC----ADAYILLAEEEAS----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhh----hHHHhhccccccc----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 44567899999999999999999997 7777777642111 245555556555544111
Q ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCChHHHHHHHhh---CCCC
Q 004055 119 ----------FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN--HRDALEIARRLRTALGPRQEAQQDLQS---RPSP 183 (776)
Q Consensus 119 ----------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~--N~~al~~la~ll~~lg~~qeA~~~l~k---kl~P 183 (776)
..-+-.++|.|..++|+.++|++.++..++..|. +..++.++..++..++++.++...+.+ ..-|
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 1335577899999999999999999999999886 678999999999999999999988876 2236
Q ss_pred CCHHHHHHHHHH
Q 004055 184 AALGASAVRGAP 195 (776)
Q Consensus 184 ~~~~a~~~lA~~ 195 (776)
..+...+..+..
T Consensus 328 kSAti~YTaALL 339 (539)
T PF04184_consen 328 KSATICYTAALL 339 (539)
T ss_pred chHHHHHHHHHH
Confidence 666666655543
No 234
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.46 E-value=0.003 Score=46.79 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 68 QYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVI 106 (776)
Q Consensus 68 ~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi 106 (776)
+|++||+++|++ +.+|+++|.+|...| ++++|+
T Consensus 1 ~y~kAie~~P~n----~~a~~nla~~~~~~g--~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN----AEAYNNLANLYLNQG--DYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC----HHHHHHHHHHHHHCc--CHHhhc
Confidence 489999999998 999999999999999 999986
No 235
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.44 E-value=0.0047 Score=44.53 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N 153 (776)
.+|+.+|.+|..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456777777777777777777777777777743
No 236
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.17 Score=58.01 Aligned_cols=156 Identities=14% Similarity=0.045 Sum_probs=130.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFD 131 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~ 131 (776)
.|.--..++++..|-..|.+||..+-++ ..++...|.|-|+.+ ....|.+.+++|+.+-|+--+.+|..-..-.
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~----itLWlkYae~Emknk--~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRN----ITLWLKYAEFEMKNK--QVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHhhh--hHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3333456789999999999999999888 789999999999999 9999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh-CCCCCCHHHHHHHHHHHHhCCCccchhHHhh
Q 004055 132 AIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS-RPSPAALGASAVRGAPIAGLGPCLPARPVGK 210 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k-kl~P~~~~a~~~lA~~l~~LG~~eeArk~~K 210 (776)
.||+...|.+.|.+=+...|+ ..++...-..-.+.+..+.|...|++ ..--.....++-.+..-...|...-|+.++.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999999999996 45666666666677788888888876 2221245666677777778888888888888
Q ss_pred hhcC
Q 004055 211 KAGA 214 (776)
Q Consensus 211 Ka~~ 214 (776)
++..
T Consensus 232 rAie 235 (677)
T KOG1915|consen 232 RAIE 235 (677)
T ss_pred HHHH
Confidence 8763
No 237
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.23 E-value=0.018 Score=47.28 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
+.+|.+|..++++|+|+.|..+++.+|+++|+|..+......+..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3567778888888888888888888888888888777766655443
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.18 Score=54.15 Aligned_cols=132 Identities=17% Similarity=0.061 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhCC--CCHHHHH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQ-PRFVRALLRRARAFDAIGKYEMAMQDVQVLL----GVEP--NHRDALE 158 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL----~LdP--~N~~al~ 158 (776)
..+.++.|+..+| +|.-.+..+++.++.+ |..+.....+|++.++.|+.+.|..+|+.+= .++- .+..++.
T Consensus 179 Vmy~~~~~llG~k--Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMK--EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcch--hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4566778888888 9999999999999998 5677888899999999999999999999543 3332 4456666
Q ss_pred HHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 159 IARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 159 ~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
+.+.++.-.+++..|...+.+ ..+|.++.+-.+.+.|+..+|+.-.|.+.........|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 667777777788888888877 5678889999999999999999999999999988776664
No 239
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.17 E-value=0.082 Score=60.44 Aligned_cols=163 Identities=15% Similarity=0.043 Sum_probs=125.8
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYE 137 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~d 137 (776)
...|.+.+...|+.+|.+-|..+=..+.++...|...++.. +...|...+..||-.-|++. .+-..-.+-.++++++
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~--~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL--NLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc--ccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHH
Confidence 57899999999999999999765567888999999988888 99999999999999988643 2222223457889999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCC-CC-CHHHHHHH--HHHHHhCCCccchhHHhhhhc
Q 004055 138 MAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPS-PA-ALGASAVR--GAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 138 eAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~-P~-~~~a~~~l--A~~l~~LG~~eeArk~~KKa~ 213 (776)
-+...|.+-|...|.|-.++...+.+-..+|+.+.|...|.-.++ |. +.+-.... -..-...|.++.|+..+.+-.
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988866322 32 12222222 223345889999999988866
Q ss_pred CCCCCCccCC
Q 004055 214 APAGGLLVSP 223 (776)
Q Consensus 214 ~s~P~~~v~p 223 (776)
...+-..|++
T Consensus 535 ~rt~h~kvWi 544 (677)
T KOG1915|consen 535 DRTQHVKVWI 544 (677)
T ss_pred HhcccchHHH
Confidence 5544444443
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.12 E-value=0.11 Score=49.66 Aligned_cols=87 Identities=28% Similarity=0.305 Sum_probs=68.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 91 AACLMQMKPINYETVIAECTMALQVQPR----------------------FVRALLRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 91 A~cy~~LG~gdyeeAi~~~~kALeldP~----------------------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
|......+ +...++..+.+++.+-.. +..++..++.++...|+++.|+..+++++.
T Consensus 13 a~~~~~~~--~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 13 ARAAARAG--DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 44444555 888888888888877322 245777888889999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 149 VEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 149 LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
++|.|..++..+-.++...|+...|+..|.+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 241
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.041 Score=58.40 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQV--------QPR----------FVRALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--------dP~----------n~kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
..+....|.-++++| +|.+|...|..|+-. .|. ....|++.+.|+...|+|-++++.+..
T Consensus 178 v~~l~q~GN~lfk~~--~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLG--RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hHHHHHhhhhhhhhc--cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 345667888899999 999999999998743 343 346899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCH
Q 004055 146 LLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAAL 186 (776)
Q Consensus 146 AL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~ 186 (776)
+|..+|.|.-+++..++++...=..++|...+.. .++|.-.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 9999999999999999999998888999998877 5556443
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.83 E-value=0.38 Score=51.44 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCCCH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK------PINYETVIAECTMALQVQPRFV 120 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG------~gdyeeAi~~~~kALeldP~n~ 120 (776)
+.....+..+++.++|+.|+...++-+++.|+ |++...+++.+|.+++..- +.--..|+..+...+..-|+..
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 45678889999999999999999999999998 5778899999999987753 1123578889999999999752
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 121 -----------------RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 121 -----------------kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.-=+..|+.|.+.|.+-.|..-++.+++--|+. .+++..+..++..+|-.++|......
T Consensus 151 Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 151 YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 122345778999999999999999999998765 46777788888899988887765443
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.82 E-value=0.014 Score=41.99 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPR 118 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~ 118 (776)
.+|+.+|.+|..+| ++++|+..+.++++++|+
T Consensus 2 ~~~~~lg~~y~~~~--~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG--DYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCC
Confidence 45667777777777 777777777777777664
No 244
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.75 E-value=0.05 Score=61.36 Aligned_cols=101 Identities=19% Similarity=0.392 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----------CChH----HHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH----------PDRA----VFHSNRAACLMQMKPINYETVIAEC 109 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~----------~d~A----~ay~n~A~cy~~LG~gdyeeAi~~~ 109 (776)
+.-+.-...|..+|++++|..|+..|..||.+-.... .|++ .+-..+..||+.++ +.+-|+...
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~r--kpdlALnh~ 251 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMR--KPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcC--CCchHHHHH
Confidence 4445556778889999999999999999998754321 1222 34556789999999 999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 110 TMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 110 ~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
.+.|.++|.+..-+++.|.|+..|.+|.+|-+.+--+
T Consensus 252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876544
No 245
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.67 E-value=0.18 Score=61.38 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=91.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHc
Q 004055 55 KRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ-VQPRFVRALLRRARAFDAI 133 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-ldP~n~kAl~~rA~ay~aL 133 (776)
-....++|..|+....+.++..|+. ..+....|..+.++| .+++|. .|-.++. ..+++...+-.+-.||..+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~g--k~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLG--KGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhc--CchhHH-HHHhhhccCCCCchHHHHHHHHHHHHH
Confidence 3567789999999999999999986 778888999999999 999999 5555555 4566778888899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004055 134 GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPR 170 (776)
Q Consensus 134 Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~ 170 (776)
+++++|+..|++++.-+|+ ......+-.++.+.+.+
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 77777777777766554
No 246
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.53 E-value=0.052 Score=63.19 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=90.4
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGK 135 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr 135 (776)
+.-.|+...|+.++..|+.+.|.. ...-..++|+.++.-+ ....|...+.++|.++..-+-.+|.+|++|..+.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~---~~v~~v~la~~~~~~~--~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQ---QDVPLVNLANLLIHYG--LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhh---hcccHHHHHHHHHHhh--hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 345688889999999999998864 1334678999998888 88999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 136 YEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 136 ~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
.+.|++.|++|+.++|+|+.....+..+..
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999988877766554
No 247
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.081 Score=62.18 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
.+...+..+|+.++|..+++.|...+...|.+. .+.+.+..+++.||+.+. +.+.|...+.+|-+.+|.++-..+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~--QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE--QLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhhccccHHHHHH
Confidence 467888999999999999999999999988753 346788999999999999 9999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
.-.+...-|.-++|+....+.....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhh
Confidence 8888889999999999988876653
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.42 E-value=0.067 Score=61.99 Aligned_cols=104 Identities=18% Similarity=0.076 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCH
Q 004055 61 DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF----VRALLRRARAFDAIGKY 136 (776)
Q Consensus 61 dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n----~kAl~~rA~ay~aLGr~ 136 (776)
+...|........+..|++ +-.++..|.++...| +.++|+..+++++...... .-+++-+|.|+..+++|
T Consensus 248 ~~~~a~~lL~~~~~~yP~s----~lfl~~~gR~~~~~g--~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNS----ALFLFFEGRLERLKG--NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred CHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhc--CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 4455555555555555554 555555555555555 6666666666555433322 23455566666666666
Q ss_pred HHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCh
Q 004055 137 EMAMQDVQVLLGVEPNHR-DALEIARRLRTALGPR 170 (776)
Q Consensus 137 deAl~d~~kAL~LdP~N~-~al~~la~ll~~lg~~ 170 (776)
++|..+|.+.++.+.-+. .+.+..+.|+..+++.
T Consensus 322 ~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 322 EEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 666666666555544332 2233344445555554
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.36 E-value=0.027 Score=39.94 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N 153 (776)
|++.+|.|+..+|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777777753
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.35 E-value=0.089 Score=58.52 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC-----
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF----- 119 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n----- 119 (776)
+.+...|+.+...+.|+++++.|++|+++...+.+ .--.++..++..|-+++ +|++|+-+..+|+++-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~--D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK--DYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH--hhhHHhhhhHhHHHHHHhcCcCch
Confidence 44555888899999999999999999998654421 12256788899999999 9999999999988874322
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHH----HHHHHHHHHcCChHHHHHHHhh
Q 004055 120 -----VRALLRRARAFDAIGKYEMAMQDVQVLLGV--EPNHRDAL----EIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 120 -----~kAl~~rA~ay~aLGr~deAl~d~~kAL~L--dP~N~~al----~~la~ll~~lg~~qeA~~~l~k 179 (776)
..++|+++.+|..+|++-.|.++++.+.++ .-.|..++ ..++.+|...|+.+.|...|+.
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 357888999999999999999999988665 44454443 4567888888888887776655
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.30 E-value=0.083 Score=58.77 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHH----HHHcCCC--
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTM----ALQVQPR-- 118 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~k----ALeldP~-- 118 (776)
.+....+.|..+|+..++++|+..+.+.|....+. .++...|-.++.++..+| .|.+++...-. +++.+..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-~~Rf~~lG~l~~a~s~~g--~y~~mL~~a~sqi~~a~~~~ds~~ 81 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-MGRFRVLGCLVTAHSEMG--RYKEMLKFAVSQIDTARELEDSDF 81 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHhccchhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577889999999999999999999999876653 234455666777888888 88887765444 3333322
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHhhCC----CCC----C
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR-----DALEIARRLRTALGPRQEAQQDLQSRP----SPA----A 185 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~-----~al~~la~ll~~lg~~qeA~~~l~kkl----~P~----~ 185 (776)
...++.++++.+..+.+|.+++.+..-.+.+-...+ .++..++.++.-++.++++++.|+... .-. .
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 256999999999999999999999999888754333 556678888888999999999887721 111 1
Q ss_pred HHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 186 LGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 186 ~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
......+|..+..+.++++|.-+..|+.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 2356778999999999999998888864
No 252
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.35 Score=52.08 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=82.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------------CCChHHHHHHHHHHHHHc--CCCCHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKT-----------------------HPDRAVFHSNRAACLMQM--KPINYE 103 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~-----------------------~~d~A~ay~n~A~cy~~L--G~gdye 103 (776)
+..-|..+...++|++|+....+...+.-.- ..+--.....+|.+|..+ |-+.+.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 3445666777777777776665533322110 001112334455555543 223677
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 104 TVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 104 eAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
.|.-.|...-+.-|..+..+...|.|++.+|+|++|...++.+|.-++++++++.++-.+-..+|...++...+
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 77777777777666677777788888888888888888888888888888888888777777777766655544
No 253
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.10 E-value=0.075 Score=43.67 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF 130 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay 130 (776)
.+++.+|..+.++| +|..|...|+.+|+.+|+|..|......+-
T Consensus 2 d~lY~lAig~ykl~--~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG--EYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhh--hHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788999999999 999999999999999999999877665543
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.73 Score=49.26 Aligned_cols=165 Identities=16% Similarity=0.025 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CC
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPINYETVIAECTMALQV-----QP 117 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel-----dP 117 (776)
.+..|..-++.+-..++|++|...+.+|++-.-++.. ..+..|=..|.....+. .+.++...+++|..+ .|
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~--klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELS--KLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHhCCc
Confidence 3455555666677788999999999999976544311 12344555556666677 899999999999887 23
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---H---HHHHHHHHHHHHcCChHHHHHHHhhC------CCCC
Q 004055 118 RFV-RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---R---DALEIARRLRTALGPRQEAQQDLQSR------PSPA 184 (776)
Q Consensus 118 ~n~-kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~---~al~~la~ll~~lg~~qeA~~~l~kk------l~P~ 184 (776)
.-. .++-+-|.+ ...-+.++|++.|++++.+--++ . +.+...++++.++..+.+|...+.+. ....
T Consensus 108 dtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 108 DTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred chHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 332 344444444 46778999999999998875433 2 33444566777888888888777652 1112
Q ss_pred CHHHHHHHHHH--HHhCCCccchhHHhhhh
Q 004055 185 ALGASAVRGAP--IAGLGPCLPARPVGKKA 212 (776)
Q Consensus 185 ~~~a~~~lA~~--l~~LG~~eeArk~~KKa 212 (776)
+......++.+ +....+|-.|++.++..
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 22233344444 44455999999887774
No 255
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.5 Score=50.17 Aligned_cols=174 Identities=13% Similarity=0.097 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC-
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK--THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR- 118 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~--~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~- 118 (776)
+.+.++.+..-||.+--.++|..|=..|-++-.+.-. +..|.+..|.-.+.||.+. +..+|++.+.+|+++--+
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~---~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV---DPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHHHHhh
Confidence 4466777777778888888999999999998876432 2235688899999999887 699999999999998432
Q ss_pred -----CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC---HHHHHH---HHHHHHHcCChHHHHHHHhh--C--CC
Q 004055 119 -----FVRALLRRARAFDA-IGKYEMAMQDVQVLLGVEPNH---RDALEI---ARRLRTALGPRQEAQQDLQS--R--PS 182 (776)
Q Consensus 119 -----n~kAl~~rA~ay~a-LGr~deAl~d~~kAL~LdP~N---~~al~~---la~ll~~lg~~qeA~~~l~k--k--l~ 182 (776)
-.+.+..+|.+|.. +.+++.|+.+|+++-...... ..+... .+.....++++..|+..|++ + .+
T Consensus 107 Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 107 GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 13456678888865 499999999999998775533 222222 23334467899999998876 1 11
Q ss_pred ----CCCHHHHHHH-HHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 183 ----PAALGASAVR-GAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 183 ----P~~~~a~~~l-A~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
...+..+++. |.|+.-..+.--++..+.+.....|.
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 2334444444 77777778888888888887654444
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.92 E-value=0.28 Score=56.90 Aligned_cols=115 Identities=14% Similarity=-0.003 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCChHHHH
Q 004055 99 PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH----RDALEIARRLRTALGPRQEAQ 174 (776)
Q Consensus 99 ~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N----~~al~~la~ll~~lg~~qeA~ 174 (776)
..+...|...+...+...|+..-.++..|+++...|+.++|+..|++++.....- .-.+..++.++..+.++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3588999999999999999999999999999999999999999999988544332 344567888899999999999
Q ss_pred HHHhh--CCCCCC-HHHHHHHHHHHHhCCCc-------cchhHHhhhhc
Q 004055 175 QDLQS--RPSPAA-LGASAVRGAPIAGLGPC-------LPARPVGKKAG 213 (776)
Q Consensus 175 ~~l~k--kl~P~~-~~a~~~lA~~l~~LG~~-------eeArk~~KKa~ 213 (776)
..+.. ..+... .-+.+..|.|+..+|+. ++|...+++..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 98876 333332 34556779999999999 77777777753
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.21 Score=54.41 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=84.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHH--HHH
Q 004055 90 RAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA---LEIAR--RLR 164 (776)
Q Consensus 90 ~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a---l~~la--~ll 164 (776)
.+.-.+..+ ++.+|...+..++...|.+..+.+.++.||...|+.+.|...+. ..|.+... +...+ .++
T Consensus 140 ~~~~~~~~e--~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~----~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 140 EAKELIEAE--DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA----ALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred Hhhhhhhcc--chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH----hCcccchhhHHHHHHHHHHHH
Confidence 444556667 99999999999999999999999999999999999998887765 44443322 22222 222
Q ss_pred HHcCChHHHHHHHhh-CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 165 TALGPRQEAQQDLQS-RPSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 165 ~~lg~~qeA~~~l~k-kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
.+.....+....-.+ ..+|++..+.+-++..+...|+++.|..++-.-
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 232222221111112 468999999999999999999999999886553
No 258
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.88 E-value=0.04 Score=36.58 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLGVEP 151 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~LdP 151 (776)
+++.+|.++..+++++.|...|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344445555555555555555555554444
No 259
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.85 E-value=0.98 Score=57.55 Aligned_cols=129 Identities=11% Similarity=-0.001 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN--HRDALEIARR 162 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~--N~~al~~la~ 162 (776)
..|..+.-+|...+ .+++|.+.+++-++.--.....|...|..++..++-+.|...+.+||+.-|. +.......+.
T Consensus 1531 ~V~~~L~~iy~k~e--k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSE--KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHhh--cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 45667777888888 8999999999988877777889999999999999999999999999999998 7788888889
Q ss_pred HHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCC
Q 004055 163 LRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s 215 (776)
+-++.|+.+++...|.- ...|.-.+.|.++...-...|+..-.|..+.+..+.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 99999999998888876 455777888888888889999999999999887643
No 260
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.82 E-value=0.73 Score=52.03 Aligned_cols=158 Identities=20% Similarity=0.189 Sum_probs=109.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CCCC--hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 55 KRFQNKDYVGALEQYDNALRLTPK--THPD--RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF 130 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLdP~--~~~d--~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay 130 (776)
.+...|+|+.|+...+......-- +..+ ++.++...|...+.. +...|..+...++++.|+...+-..-+++|
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda---dp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA---DPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 456778888888777766553211 1111 344445445444444 789999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh---CCCCCCHHHHHHHHHHHHhCCCccchhH
Q 004055 131 DAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS---RPSPAALGASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 131 ~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k---kl~P~~~~a~~~lA~~l~~LG~~eeArk 207 (776)
+..|+..++-..++.+.+.+|+ +.+...+ ++.+-|+.....-...+ .+.|++......++..-+.-|++..|+.
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePH-P~ia~lY--~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPH-PDIALLY--VRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCC-hHHHHHH--HHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 9999999999999999999996 3332222 22334443322221111 4678888888888888888888888887
Q ss_pred HhhhhcCCCCC
Q 004055 208 VGKKAGAPAGG 218 (776)
Q Consensus 208 ~~KKa~~s~P~ 218 (776)
.-.......|.
T Consensus 351 ~Aeaa~r~~pr 361 (531)
T COG3898 351 KAEAAAREAPR 361 (531)
T ss_pred HHHHHhhhCch
Confidence 76665544444
No 261
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.79 Score=49.48 Aligned_cols=164 Identities=9% Similarity=0.014 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
+..+..++.+-.-++-+.=+.....-+....... ....+..-|.+|+.-+ +|++|+..... -.+..+.-.-
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~s--n~i~~l~aa~i~~~~~--~~deAl~~~~~-----~~~lE~~Al~ 143 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGS--NLIDLLLAAIIYMHDG--DFDEALKALHL-----GENLEAAALN 143 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccch--hHHHHHHhhHHhhcCC--ChHHHHHHHhc-----cchHHHHHHH
Confidence 3445555555555554554444444443322221 1234555566777777 99999987665 3456666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCC
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL----GPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLG 200 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l----g~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG 200 (776)
-.|+.++.+++.|...+++...++- ..++..++..+..+ ++.++|.-.|+. ..-|..+......+.|+..+|
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 7899999999999999999988874 44455566555543 347777777766 223456667777899999999
Q ss_pred CccchhHHhhhhcCCCCCCcc
Q 004055 201 PCLPARPVGKKAGAPAGGLLV 221 (776)
Q Consensus 201 ~~eeArk~~KKa~~s~P~~~v 221 (776)
+|++|+...+.+....+.++.
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHH
Confidence 999999999999988777744
No 262
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.44 Score=50.56 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=95.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC------CCHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQM-KPINYETVIAECTMALQVQP------RFVRA 122 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~L-G~gdyeeAi~~~~kALeldP------~n~kA 122 (776)
++..+|++.+..+|+..+.++|.+..+-.. .-+..|..+|.+|-.- . ++++||..|..|-+.-. .-.++
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~--d~ekaI~~YE~Aae~yk~ees~ssANKC 156 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQ--DFEKAIAHYEQAAEYYKGEESVSSANKC 156 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHH--HHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 444567888999999999999998654210 1134455677776553 5 89999999999977533 23578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA-------LEIARRLRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a-------l~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
++.-|..-..+++|..|+..|+++....-+|... ....+.|+....+.-.+...+++ .+.|...+.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 8888888899999999999999998887777644 33445666665666555555555 466765543
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.71 E-value=0.41 Score=51.68 Aligned_cols=125 Identities=8% Similarity=-0.072 Sum_probs=92.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
....+..-+.+..+.|-..|.+|++..+.. ..+|...|..-+..+ ++...|...|+.+++.-|.+...++.....
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~----~~vy~~~A~~E~~~~-~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCT----YHVYVAYALMEYYCN-KDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-----THHHHHHHHHHHHTC-S-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 344444555555889999999998544433 567777777766644 277779999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHR---DALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~---~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+..+|+.+.|...|++++..-|... .++......-...|+.........+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999877665 5666666666777887766655543
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.71 E-value=0.98 Score=51.06 Aligned_cols=162 Identities=15% Similarity=0.028 Sum_probs=106.7
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHH
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKT-HPDRAVFHSNRAACLMQ-MKPINYETVIAECTMA-LQVQPRFVRALLRRARAFDA 132 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~-~~d~A~ay~n~A~cy~~-LG~gdyeeAi~~~~kA-LeldP~n~kAl~~rA~ay~a 132 (776)
|..-++|+.-+...+. +...|+. -+....+.+..|.++.+ ..+|+.++|+..+..+ ....+.++..|...|++|-.
T Consensus 151 yRdiqdydamI~Lve~-l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVET-LEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred hhhhhhHHHHHHHHHH-hhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 4455666555555544 3434432 12235566777888877 2244999999999994 45567889999999998854
Q ss_pred c---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH-----------Hhh--CCC-CCCHHHH
Q 004055 133 I---------GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQD-----------LQS--RPS-PAALGAS 189 (776)
Q Consensus 133 L---------Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~-----------l~k--kl~-P~~~~a~ 189 (776)
+ ..++.|+..|.++..++|+.-.. .+++.++...|........ +-+ ... -.+-...
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ 308 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDV 308 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHH
Confidence 3 24789999999999999765444 3445555555542222111 101 111 2344556
Q ss_pred HHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 190 AVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 190 ~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
..+..+....|+++.|....++.....|+.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 778888999999999999999988776664
No 265
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.70 E-value=0.047 Score=36.21 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPR 118 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~ 118 (776)
.+++++|.|++.++ +++.|+..+.+++.++|.
T Consensus 2 ~~~~~~a~~~~~~~--~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLG--DYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHh--hHHHHHHHHHHHHccCCC
Confidence 35778888888888 888888888888888775
No 266
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.61 E-value=0.1 Score=59.85 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCC--CC--hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNA-LRLTPKTH--PD--RAVFHSNRAACLMQMKPINYETVIAECTMALQ------ 114 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KA-LkLdP~~~--~d--~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe------ 114 (776)
+..+..+.+..|-.|+|..|+..+... |.-.|... |. ...++.|+|-++++++ .|.-++-.|.+||+
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~--~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLG--CYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehh--hHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888776432 11122211 11 2334678999999998 99999999999885
Q ss_pred ---cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 115 ---VQP---------RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 115 ---ldP---------~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
+.| +....+|+.|..|..+|+.-.|.+.|.++....-.||.+|..++.|...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 112 2457889999999999999999999999999998999999888887553
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=0.46 Score=49.13 Aligned_cols=102 Identities=15% Similarity=0.034 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
...+.+..++..++++.|+..++.++....+ ....+.+-.++|.+.+++| .+++|+..++..-.-+ =.+..--.+|
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~--k~D~AL~~L~t~~~~~-w~~~~~elrG 166 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQK--KADAALKTLDTIKEES-WAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhh--hHHHHHHHHhcccccc-HHHHHHHHhh
Confidence 3456667777777777777777777764322 1223455666777777777 7777777554322111 0123356677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~N 153 (776)
.++...|+-++|...|.+++..++++
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCCh
Confidence 77777777777777777777777443
No 268
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.50 E-value=0.38 Score=47.11 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004055 84 AVFHSNRAACLMQMK-PINYETVIAECTMALQ-VQPR-FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIA 160 (776)
Q Consensus 84 A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALe-ldP~-n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~l 160 (776)
....+|+|.|+.... ..+..+-|..+...+. ..|. .-..+|.+|..++++++|+.++++++..|+.+|+|..+..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 567899999988765 1144566777777775 4453 356889999999999999999999999999999999998888
Q ss_pred HHHHHHc
Q 004055 161 RRLRTAL 167 (776)
Q Consensus 161 a~ll~~l 167 (776)
..+..++
T Consensus 112 ~~ied~i 118 (149)
T KOG3364|consen 112 ETIEDKI 118 (149)
T ss_pred HHHHHHH
Confidence 7776655
No 269
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.44 E-value=0.25 Score=47.37 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR------------FVRALLRRARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~------------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
.+..|..++....++..|-|++|...|.+|...... +.-++-.++.++..||+|++++....++|..-
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 356677777777777666999999999999987433 23466777889999999999999888776431
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 151 PNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 151 P~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.+.|.+.+..-.+ ...+.+.++..+..+|+.++|.+.++++.
T Consensus 86 --------------NRRGEL~qdeGkl-------WIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 86 --------------NRRGELHQDEGKL-------WIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp --------------HHH--TTSTHHHH-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --------------hhccccccccchh-------HHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 1222221111110 12344567777888888888888777753
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.42 E-value=2.5 Score=47.91 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
-....++....-.|+|+.|...|+.-+. +|. ..+.-.+|..+-....|.++.|+++...|...-|.-..+....
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPE-----tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At 194 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-DPE-----TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT 194 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChH-----HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH
Confidence 3556778888899999999999987655 555 3444455554444334499999999999999999999998888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHc-CChHHHHHHHhh--CCCCCCHHHHHHHHHHHH
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDAL------EIARRLRTAL-GPRQEAQQDLQS--RPSPAALGASAVRGAPIA 197 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al------~~la~ll~~l-g~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~ 197 (776)
-...+..|+++.|++.++......--....- .+-++....+ .+...|...... ++.|+...+-.+-+..|+
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 8888999999999999988765432222111 1222222222 344455554433 788999999889999999
Q ss_pred hCCCccchhHHhhhhc
Q 004055 198 GLGPCLPARPVGKKAG 213 (776)
Q Consensus 198 ~LG~~eeArk~~KKa~ 213 (776)
..|+..++-+.+..+=
T Consensus 275 ~d~~~rKg~~ilE~aW 290 (531)
T COG3898 275 RDGNLRKGSKILETAW 290 (531)
T ss_pred hccchhhhhhHHHHHH
Confidence 9999988887776644
No 271
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.40 E-value=0.12 Score=56.48 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 89 NRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 89 n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
+.|.-..+.| +.++|...+.-||.++|+++.++...|......++.-+|-++|-++|.++|.|..++.+..+.
T Consensus 121 ~~A~~~~~~G--k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDG--KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhcc--chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3344444445 888888888888888888888888888888888888888888888888888888887776543
No 272
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.15 E-value=0.18 Score=55.06 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=73.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 36 DLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 36 d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
..|++- .+.|..-...+....+.|+.++|...|.-|+.+.|++ +.++..+|.....-+ +.-+|-.+|-+||.+
T Consensus 107 e~~pa~-~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~----p~~L~e~G~f~E~~~--~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 107 ENDPAK-VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN----PQILIEMGQFREMHN--EIVEADQCYVKALTI 179 (472)
T ss_pred ccCchh-hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC----HHHHHHHhHHHHhhh--hhHhhhhhhheeeee
Confidence 334333 3445555566777889999999999999999999998 888999998887777 999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 004055 116 QPRFVRALLRRARAF 130 (776)
Q Consensus 116 dP~n~kAl~~rA~ay 130 (776)
+|.|.+|+.+|++..
T Consensus 180 sP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 180 SPGNSEALVNRARTT 194 (472)
T ss_pred CCCchHHHhhhhccc
Confidence 999999999998754
No 273
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.04 E-value=0.26 Score=43.81 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
..+....+.|..+|...+...|+..+.++|+..++. +++..++-.+..+|+.+| +|.+++.+...-+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~G--kyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWG--KYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999884 567788888899999999 999999887665554
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=1 Score=46.61 Aligned_cols=108 Identities=17% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHhhCCC
Q 004055 109 CTMALQVQPRFV---RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALEIARRLRTALGPRQEAQQDLQSRPS 182 (776)
Q Consensus 109 ~~kALeldP~n~---kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~~la~ll~~lg~~qeA~~~l~kkl~ 182 (776)
..+-...+|... -+.+.+|..+...|+++.|...++.++..-.+. .-+...+++++...+++++|+..+.....
T Consensus 75 ~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~ 154 (207)
T COG2976 75 AEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE 154 (207)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence 333344454443 356677888899999999999999888654332 23445678888888999999998876555
Q ss_pred CCC-HHHHHHHHHHHHhCCCccchhHHhhhhcCCC
Q 004055 183 PAA-LGASAVRGAPIAGLGPCLPARPVGKKAGAPA 216 (776)
Q Consensus 183 P~~-~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~ 216 (776)
+.. +..-.++|.++...|+..+|+..++++..+.
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 443 3345677999999999999999999987554
No 275
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.93 E-value=0.094 Score=37.06 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQPRF 119 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n 119 (776)
+++++|.||..+| ++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g--~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLG--DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHHHHHCcCC
Confidence 5677888888877 8888888888888777763
No 276
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.90 E-value=0.086 Score=55.57 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=55.2
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 004055 96 QMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA 156 (776)
Q Consensus 96 ~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a 156 (776)
....++++.|...|++||.+-|.+...|+++|....+.|+++.|.+.|.+.|+++|.+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 3334599999999999999999999999999999999999999999999999999987543
No 277
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=93.82 E-value=0.068 Score=57.01 Aligned_cols=78 Identities=28% Similarity=0.372 Sum_probs=65.2
Q ss_pred ccceeEeeccceeEEeccCC--CCHHHHHHHHHhHCCC-CCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccc
Q 004055 291 WRPLKLVYDHDIRLGQMPVN--CSFKALREIVSKRFPS-SKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEA 367 (776)
Q Consensus 291 ~~~vK~~~~~DiR~~~v~~~--~~~~~L~~~v~~kF~~-~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~ 367 (776)
...||--|+.+-|++.+|.+ -+|.+|..-|+..-.. .-.|+|-|-|.-|||..|++||-|..|++++
T Consensus 18 ~veVKSKFdaEfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~hgDLLPinNDDn~~ka~~sa---------- 87 (358)
T KOG3606|consen 18 TVEVKSKFDAEFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTHGDLLPINNDDNLHKALSSA---------- 87 (358)
T ss_pred eEEeeccccchhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCCCceecccCchhHHHHhhcc----------
Confidence 45688889999999998544 4899999999885443 4569999999999999999999999999887
Q ss_pred ccCCCCCcEEEEEEec
Q 004055 368 DKSDSVGMLRLHIVDV 383 (776)
Q Consensus 368 ~~~~~~g~~rL~v~e~ 383 (776)
.+-+||+|+..
T Consensus 88 -----~PlLR~~iQkr 98 (358)
T KOG3606|consen 88 -----RPLLRLLIQKR 98 (358)
T ss_pred -----Cchhhhhhhhh
Confidence 46678888853
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.79 E-value=0.45 Score=43.09 Aligned_cols=66 Identities=27% Similarity=0.257 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCh
Q 004055 105 VIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH--RDALEIARRLRTALGPR 170 (776)
Q Consensus 105 Ai~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N--~~al~~la~ll~~lg~~ 170 (776)
.+..+.+++..+|++..+.+.+|.++...|++++|+..+-.++..+|+. ..+...+-.+...+|..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3566777888888888888888888888888888888888888888765 56666666666666653
No 279
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.73 E-value=0.84 Score=47.74 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=72.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCCCChHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCC------
Q 004055 55 KRFQNKDYVGALEQYDNALRLT---PKTHPDRAVFHSNRAACLMQMKPINYE-------TVIAECTMALQVQPR------ 118 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLd---P~~~~d~A~ay~n~A~cy~~LG~gdye-------eAi~~~~kALeldP~------ 118 (776)
.+-..+.+++|+..|.-||-.. ...+...+.++..+|.+|..++ +.+ .|+..|.+|++....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~--~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLG--DEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 4456678999999999888742 2222246888999999999998 744 555566666654322
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~ 154 (776)
....+|.+|.++.++|++++|++.|.+++..--.+.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 257899999999999999999999999998754443
No 280
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.46 E-value=0.5 Score=44.65 Aligned_cols=97 Identities=13% Similarity=0.209 Sum_probs=69.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCC--C-------CHHHHHHHHHHHHHcCCCCHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKP--I-------NYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~--g-------dyeeAi~~~~kALeldP~n~kA 122 (776)
.+..+|.+|+|-+|++..+..+...++... ...+|...|.+++.+.. . -+-.++..+.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 467899999999999999999999887621 23677778888776630 0 1235666777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
+|.+|.-+-..-.|++++.-++++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777777666666677777777776654
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.45 E-value=0.13 Score=38.28 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
+|..+|.+|..+|++++|+..|+++|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666666666666666443
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.43 E-value=1.8 Score=48.79 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCC------------------------CHHHHHHHHHHHHHc
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQV-----QPR------------------------FVRALLRRARAFDAI 133 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel-----dP~------------------------n~kAl~~rA~ay~aL 133 (776)
-...+..++.++.+.| ++..|...+.+||=. .|. ...++++....+...
T Consensus 39 HidtLlqls~v~~~~g--d~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQG--DHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3788899999999999 999999999998632 111 245888889999999
Q ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHcCChHHHHHHHhh-CC--CCC----CHHHHHHHHHHHHhCCCc
Q 004055 134 GKYEMAMQDVQVLLGVEPN-HRDALEIARRL-RTALGPRQEAQQDLQS-RP--SPA----ALGASAVRGAPIAGLGPC 202 (776)
Q Consensus 134 Gr~deAl~d~~kAL~LdP~-N~~al~~la~l-l~~lg~~qeA~~~l~k-kl--~P~----~~~a~~~lA~~l~~LG~~ 202 (776)
|.+..|++.++-.+.+||. |+-....+-.. ..+.++++--+..+.. .. ... -|...+.++.+++.+++.
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 9999999999999999999 77555444444 4455666554444433 11 111 235667788888888887
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.39 E-value=0.75 Score=53.28 Aligned_cols=94 Identities=16% Similarity=0.006 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 004055 64 GALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGK-YEMAMQD 142 (776)
Q Consensus 64 eAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr-~deAl~d 142 (776)
.=+..|+.|+..-+.+ ..++++......+.+ .|.+-...|.++|..+|+++..|...|.-.+..+. .+.|...
T Consensus 89 rIv~lyr~at~rf~~D----~~lW~~yi~f~kk~~--~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD----VKLWLSYIAFCKKKK--TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhc--chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 3467889999888876 777777766666666 79999999999999999999999999988777776 9999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q 004055 143 VQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 143 ~~kAL~LdP~N~~al~~la~l 163 (776)
|.++|+.+|+++.++...-++
T Consensus 163 flrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 163 FLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHHhhcCCCChHHHHHHHHH
Confidence 999999999999998876554
No 284
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.37 E-value=0.44 Score=58.14 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh-
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS- 179 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k- 179 (776)
+|.+|+..|.+.++..|+-.-|....|..+.++|+.++|...++..-..-+++...+..+..|+..+++++++...|++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8999999999999999999999999999999999999999777777777788899999999999999999999999988
Q ss_pred -CCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 180 -RPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 180 -kl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
...|. .....-+=.+|.+-+.|..-+
T Consensus 104 ~~~~P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 104 NQKYPS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 45566 554444444555555554433
No 285
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.26 E-value=0.98 Score=48.78 Aligned_cols=131 Identities=11% Similarity=-0.107 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAI-GKYEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aL-Gr~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
+|.....+..+.+ ..+.|...+.+|++..+.....|...|...+.. ++.+-|...|+.+++..|.+..++..+...+
T Consensus 3 v~i~~m~~~~r~~--g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTE--GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3455556666666 799999999999977677889999999997775 5666699999999999999999999999999
Q ss_pred HHcCChHHHHHHHhhCC--CCCCH---HHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 165 TALGPRQEAQQDLQSRP--SPAAL---GASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 165 ~~lg~~qeA~~~l~kkl--~P~~~---~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
..+++...+...|++.+ -|... ..+......-...|+.+..+++.++....-|.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999999999998732 22222 34444455556678888888888776654444
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.21 E-value=0.44 Score=55.18 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CC---C-----------C----HH
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV-------EP---N-----------H----RD 155 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-------dP---~-----------N----~~ 155 (776)
+....+....+||+++|+.+.||..+|. ....-..+|...|+++++. +. + + ..
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 8999999999999999999999998875 1223345555555555443 21 0 1 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhh--CCCC--CCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 156 ALEIARRLRTALGPRQEAQQDLQS--RPSP--AALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 156 al~~la~ll~~lg~~qeA~~~l~k--kl~P--~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+...++.|..++|+.++|+..+.. +..| +....+.++-.++..++.|.+++..+.|--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 456789999999999999998865 3334 356789999999999999999999999954
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.10 E-value=2.2 Score=46.12 Aligned_cols=122 Identities=14% Similarity=0.100 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--C-C---
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--Q-P--- 117 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--d-P--- 117 (776)
+.+..+...+..+.+.|.|..|...+.++....+......+.+.+-.|..+...| +..+|+..+...+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g--~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG--EQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcccc
Confidence 5677888999999999999999999999999875443334566777788888888 999999988888771 1 0
Q ss_pred ----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 118 ----------------------------RFVRALLRRARAFDAI------GKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 118 ----------------------------~n~kAl~~rA~ay~aL------Gr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
...++++.+|.....+ +..++++..|..++.++|+...++...+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0146788888887777 899999999999999999999999988887
Q ss_pred HHHc
Q 004055 164 RTAL 167 (776)
Q Consensus 164 l~~l 167 (776)
+..+
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7765
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.10 E-value=0.78 Score=54.34 Aligned_cols=162 Identities=17% Similarity=0.052 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHH-----cCCC
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK---PINYETVIAECTMALQ-----VQPR 118 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG---~gdyeeAi~~~~kALe-----ldP~ 118 (776)
..+..++......++...|...|+.+..+.- ......+|.||..-+ ..|.+.|+.++..+.. ..-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~ 286 (552)
T KOG1550|consen 213 LSLEGEGNERNESGELSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG 286 (552)
T ss_pred ccccccCcccccchhhhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555567789999998888754 567888999998872 4599999999999977 1112
Q ss_pred CHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHhhCCCCCCHHHHH
Q 004055 119 FVRALLRRARAFDAIG-----KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG---PRQEAQQDLQSRPSPAALGASA 190 (776)
Q Consensus 119 n~kAl~~rA~ay~aLG-----r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg---~~qeA~~~l~kkl~P~~~~a~~ 190 (776)
++.+.+.+|.+|.... ++..|+..|.++-.+. ++.+.+.++.++..-. +...|..+|.....-.+..+.+
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~ 364 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY 364 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH
Confidence 6779999999998853 6788999998877765 5777888888887655 4578888888866667888999
Q ss_pred HHHHHHHhC----CCccchhHHhhhhcCCC
Q 004055 191 VRGAPIAGL----GPCLPARPVGKKAGAPA 216 (776)
Q Consensus 191 ~lA~~l~~L----G~~eeArk~~KKa~~s~ 216 (776)
.++.|+..- -+...|..+.+++....
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 999887753 36678888899877444
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.06 E-value=3.7 Score=41.28 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
...+..+..+-+..+ +.+.+...+...--+.|+.+..-..-|..+...|++.+|++.++.+..-.|..+.+...++.|
T Consensus 10 v~gLie~~~~al~~~--~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 10 VGGLIEVLSVALRLG--DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344555555555666 888888888777778888888888888888888888888888888888888888888888888
Q ss_pred HHHcCChH
Q 004055 164 RTALGPRQ 171 (776)
Q Consensus 164 l~~lg~~q 171 (776)
+..+++..
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 88888744
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.85 E-value=5.9 Score=39.90 Aligned_cols=113 Identities=16% Similarity=0.047 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
....+.+........++.+++...+...-.+.|.. +.+...-|..++..| ++.+|+..++.+....|.++-+--
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~----~e~~~~~~~l~i~r~--~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF----PELDLFDGWLHIVRG--DWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhC--CHHHHHHHHHHHhccCCCChHHHH
Confidence 45678888888899999999999999988899987 777888899999999 999999999999999999998888
Q ss_pred HHHHHHHHcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHHHH
Q 004055 125 RRARAFDAIGKYEMAMQDV-QVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~-~kAL~LdP~N~~al~~la~ll~~ 166 (776)
.++.|++.+|+.. .+.| +.+++..+ ++.+......++.+
T Consensus 83 LlA~CL~~~~D~~--Wr~~A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 83 LLALCLYALGDPS--WRRYADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHcCChH--HHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 8999999998865 2333 33444444 67676666655544
No 291
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.64 E-value=1.1 Score=40.62 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 004055 64 GALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF--VRALLRRARAFDAIGKYEMAMQ 141 (776)
Q Consensus 64 eAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n--~kAl~~rA~ay~aLGr~deAl~ 141 (776)
..+..+++.+..+|++ ..+.+.+|.+++..| +|+.|+..+-.++..++.+ -.+--.+-.++..+|.-+.-..
T Consensus 6 ~~~~al~~~~a~~P~D----~~ar~~lA~~~~~~g--~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~ 79 (90)
T PF14561_consen 6 PDIAALEAALAANPDD----LDARYALADALLAAG--DYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVS 79 (90)
T ss_dssp HHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT---HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHH
T ss_pred ccHHHHHHHHHcCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHH
Confidence 3567889999999998 899999999999999 9999999999999999877 4555555556666666555555
Q ss_pred HHHHH
Q 004055 142 DVQVL 146 (776)
Q Consensus 142 d~~kA 146 (776)
.|++-
T Consensus 80 ~~RRk 84 (90)
T PF14561_consen 80 EYRRK 84 (90)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 292
>PRK10941 hypothetical protein; Provisional
Probab=92.33 E-value=1.3 Score=47.92 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
.-+.+.=..+.+.++|+.|+...+..+.+.|++ +.-+.-+|.+|.++| .+..|+.+++.-++.-|..+.+...+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d----p~e~RDRGll~~qL~--c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPED----PYEIRDRGLIYAQLD--CEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 345566678899999999999999999999997 777888999999999 99999999999999999999987776
Q ss_pred HHHH
Q 004055 127 ARAF 130 (776)
Q Consensus 127 A~ay 130 (776)
..+.
T Consensus 256 ~ql~ 259 (269)
T PRK10941 256 AQIH 259 (269)
T ss_pred HHHH
Confidence 6554
No 293
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.13 E-value=6.3 Score=47.26 Aligned_cols=171 Identities=13% Similarity=0.006 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--------
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR-------- 118 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~-------- 118 (776)
.-+..-|..+-..|+.+.|...|++|++..=..-.+++..|++-|..-+.-. +++.|+...+.|+.+--+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~--~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE--NFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh--hHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 4677888888999999999999999998765444567888888887766666 899999998888765111
Q ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC--CC--CC
Q 004055 119 ----------FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR--PS--PA 184 (776)
Q Consensus 119 ----------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk--l~--P~ 184 (776)
+.+.|...+.....+|=++.....|++++.|---.|.+..+.+..+..-.-++++...|++- +- |.
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 34577777888888999999999999999999888999999999888888888888888872 22 33
Q ss_pred CHHHH---HHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 185 ALGAS---AVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 185 ~~~a~---~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
--+.+ .......+.--+.+.||-.+.++...-||.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 22322 233333445557788898999988765553
No 294
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.12 E-value=0.96 Score=52.29 Aligned_cols=145 Identities=10% Similarity=-0.067 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCCC------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA-LQVQPR------ 118 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kA-LeldP~------ 118 (776)
++.++-.+. .+.+....+...-.-+..+..+. +.+.+..++.++-+| +|.+|...+... +...|.
T Consensus 208 ~~~ykVr~l--lq~~~Lk~~krevK~vmn~a~~s----~~~l~LKsq~eY~~g--n~~kA~KlL~~sni~~~~g~~~T~q 279 (696)
T KOG2471|consen 208 LQLYKVRFL--LQTRNLKLAKREVKHVMNIAQDS----SMALLLKSQLEYAHG--NHPKAMKLLLVSNIHKEAGGTITPQ 279 (696)
T ss_pred hhHhhHHHH--HHHHHHHHHHHhhhhhhhhcCCC----cHHHHHHHHHHHHhc--chHHHHHHHHhcccccccCccccch
Confidence 444554444 44555555665555555555444 677888899999999 999999876543 333343
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------hCC---------CCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 119 --FVRALLRRARAFDAIGKYEMAMQDVQVLLG---------VEP---------NHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 119 --n~kAl~~rA~ay~aLGr~deAl~d~~kAL~---------LdP---------~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
...++.++|-+++++|.|..+...|.++|+ +.| ....++++.+..+...|+.-.|...|.
T Consensus 280 ~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 280 LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 234567899999999999999999999996 122 235788899999999999998888887
Q ss_pred h--CCCCCCHHHHHHHHHHHHh
Q 004055 179 S--RPSPAALGASAVRGAPIAG 198 (776)
Q Consensus 179 k--kl~P~~~~a~~~lA~~l~~ 198 (776)
+ ..--.+|..|..++.|...
T Consensus 360 ~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHHH
Confidence 6 2334567888888877664
No 295
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=0.83 Score=49.38 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
+..+..|+=..|++-+ +++.|.....+.+.++|.++.-+..+|.+|.++|.+.-|+.++...+...|+++.+-.....
T Consensus 180 l~rll~~lk~~~~~e~--~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 180 LSRLLRNLKAALLREL--QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHhh--chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456677778888888 99999999999999999999999999999999999999999999999999999887665554
Q ss_pred HH
Q 004055 163 LR 164 (776)
Q Consensus 163 ll 164 (776)
+.
T Consensus 258 l~ 259 (269)
T COG2912 258 LL 259 (269)
T ss_pred HH
Confidence 43
No 296
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=6.8 Score=43.85 Aligned_cols=115 Identities=10% Similarity=-0.063 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHH---HHHHHHHHHHHcCChHHHH
Q 004055 99 PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV-EPNHRD---ALEIARRLRTALGPRQEAQ 174 (776)
Q Consensus 99 ~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-dP~N~~---al~~la~ll~~lg~~qeA~ 174 (776)
.|++.+|...+++.|.-.|.+.-++-.--.+++.+|+...-...+++++-. +|+-|. ++..++-.+...|-+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 349999999999999999999999999999999999999999999999876 777644 4445556677889999999
Q ss_pred HHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 175 QDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 175 ~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
....+ .++|.+..+...++.++...|++.++..+..+..
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 88877 6889999999999999999999999999987743
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.61 E-value=0.3 Score=36.26 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMA 112 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kA 112 (776)
|.++|.+|..+| +|++|+..|.++
T Consensus 2 l~~Lg~~~~~~g--~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQG--DYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 344555555555 555555555553
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.18 E-value=7.8 Score=41.27 Aligned_cols=133 Identities=14% Similarity=-0.013 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcC-
Q 004055 59 NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK--PINYETVIAECTMALQVQPRF-VRALLRRARAFDAIG- 134 (776)
Q Consensus 59 kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG--~gdyeeAi~~~~kALeldP~n-~kAl~~rA~ay~aLG- 134 (776)
.+++..|+..|..+... .. +...+++|.+|..-. ..++.+|...+.+|....-.. ..+.+.+|.+|..-.
T Consensus 90 ~~~~~~A~~~~~~~a~~--g~----~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~ 163 (292)
T COG0790 90 SRDKTKAADWYRCAAAD--GL----AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQ 163 (292)
T ss_pred cccHHHHHHHHHHHhhc--cc----HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChh
Confidence 44678888888854443 22 567788888887732 228899999999888875222 233888888886631
Q ss_pred ------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 004055 135 ------KYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL----GPRQEAQQDLQSRPSPAALGASAVRGAPIAGLG 200 (776)
Q Consensus 135 ------r~deAl~d~~kAL~LdP~N~~al~~la~ll~~l----g~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG 200 (776)
+...|+..|.++-... ++.+...++.++..- .+..+|..+|.+...-.+..+.+.++ +++..|
T Consensus 164 ~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 164 ALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred hhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcC
Confidence 2336888888877776 778888888777652 35788888887733323366777777 666666
No 299
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.98 E-value=6.8 Score=50.46 Aligned_cols=151 Identities=15% Similarity=-0.003 Sum_probs=120.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR--FVRALLRRARA 129 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~--n~kAl~~rA~a 129 (776)
....|-.-..+++|.+.|+.-++--... ...|...|..++... +-+.|...+.+||.--|+ +......-|..
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~----~~vW~~y~~fLl~~n--e~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQT----RKVWIMYADFLLRQN--EAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcch----hhHHHHHHHHHhccc--HHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 3445666778889999999988887743 678999999999998 889999999999999998 78888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh----CCCCCCHHHHHHHHHHHHh-CCCccc
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS----RPSPAALGASAVRGAPIAG-LGPCLP 204 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k----kl~P~~~~a~~~lA~~l~~-LG~~ee 204 (776)
-++.|+-+.+...|.-.|.-+|.-.+.|..+...-.+.++..-+...|++ .+.|......+-+-.-|-. -|+-..
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 99999999999999999999999999999999988888988888888877 3455555555544433333 244333
Q ss_pred hhHH
Q 004055 205 ARPV 208 (776)
Q Consensus 205 Ark~ 208 (776)
.+.+
T Consensus 1690 vE~V 1693 (1710)
T KOG1070|consen 1690 VEYV 1693 (1710)
T ss_pred HHHH
Confidence 3333
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.42 E-value=1.5 Score=53.34 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHH----------HHcCCCCHHHHHH----------HHHHHHHcCCHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMA----------LQVQPRFVRALLR----------RARAFDAIGKYEMAMQDV 143 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kA----------LeldP~n~kAl~~----------rA~ay~aLGr~deAl~d~ 143 (776)
-..|++.|.-+...+ +...|+.+|.++ |.-+|...+-|.+ -|..+...|+.+.|+..|
T Consensus 858 r~Tyy~yA~~Lear~--Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARR--DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred hhhHHHHHHHHHhhc--cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 456778887777777 888888888764 3335554443333 366677788888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 144 QVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 144 ~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
..| .-++.+-+++..+|+.++|...... ..+..+-+.+|+.|-..|++.+|-+++.++.
T Consensus 936 ~~A--------~D~fs~VrI~C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSA--------KDYFSMVRIKCIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHh--------hhhhhheeeEeeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 654 3355666677777887777665432 3456677888999999999999999999864
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=4.1 Score=44.19 Aligned_cols=118 Identities=12% Similarity=0.142 Sum_probs=100.9
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGK 135 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr 135 (776)
+++...-..|+..-..+|.++|.+ -..+..+=.|+..++ .+..+-++++...++-+|+|-..+-.|-.+...+|+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAn----YTVW~yRr~iL~~l~-~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPAN----YTVWQYRRVILRHLM-SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCccc----chHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC
Confidence 344556788999999999999987 677777888888876 578888999999999999999999999999999998
Q ss_pred HH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 136 YE-MAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 136 ~d-eAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
.. .-+.....+|..|..|--++--..-+....+.++..+.+..
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 88 78899999999999999888888888888888877666543
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.01 E-value=1.9 Score=49.79 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=81.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
.-+.-......||...|-.....+|+-.|.. +..-..++.++..+| +|+.+...+.-+-.+-..-.+++..+-+
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~~~~----p~~i~l~~~i~~~lg--~ye~~~~~~s~~~~~~~s~~~~~~~~~r 365 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQQQD----PVLIQLRSVIFSHLG--YYEQAYQDISDVEKIIGTTDSTLRCRLR 365 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhCCCC----chhhHHHHHHHHHhh--hHHHHHHHhhchhhhhcCCchHHHHHHH
Confidence 3333444556777777777777777777765 444455667777777 7887777766555444444556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.+..+|++++|+......|.-+-+++++....+.....++-.+++...+.+
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKR 416 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHH
Confidence 777778888887777777766666777666655555556666666655544
No 303
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=4.4 Score=47.95 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=79.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH-----
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR----- 126 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r----- 126 (776)
....+...++...++.....++..+|.+ +.++.|+|.+....| ..+.-+...+..+....|+|...+..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~L~~ale~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPEN----CPAVQNLAAALELDG-LQFLALADISEIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCccc----chHHHHHHHHHHHhh-hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH
Confidence 4555667777778888888888888887 778888888877776 244445555555888888887766666
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 127 -ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 127 -A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
|+.+..+|+..++..+..++..+.|.++.+...+...
T Consensus 148 ~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 148 LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7778888888888888888888888886665544444
No 304
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.16 E-value=14 Score=39.70 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC------CCC----ChHHHHHHHHHHHHHcCCCCHH--
Q 004055 37 LDSSIFLKRAHELKEEGNKRFQNK-DYVGALEQYDNALRLTPK------THP----DRAVFHSNRAACLMQMKPINYE-- 103 (776)
Q Consensus 37 ~D~~~~le~A~~LkeeGn~lfqkG-dyeeAle~Y~KALkLdP~------~~~----d~A~ay~n~A~cy~~LG~gdye-- 103 (776)
.++......+..+++.|..++.++ +|+.|+..+++|+.+... .++ .+..++..++.+|+..+ .++
T Consensus 26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~--~~~~~ 103 (278)
T PF08631_consen 26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWD--TYESV 103 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCC--ChHHH
Confidence 345556789999999999999999 999999999999998421 122 35677888999999987 554
Q ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004055 104 -TVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEP 151 (776)
Q Consensus 104 -eAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP 151 (776)
+|....+.+-.-.|+.+..++..=.++...++.+.+.+.+.+.+.--+
T Consensus 104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 344444444444677777765555555568889999888888887644
No 305
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.95 E-value=0.59 Score=49.54 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=55.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH
Q 004055 54 NKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV 120 (776)
Q Consensus 54 n~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~ 120 (776)
..+++.+|++.|.+.|.+++.+-|.. +..++.+|....+.| +++.|...|.+.|+++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w----~~gwfR~g~~~ekag--~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW----AAGWFRLGEYTEKAG--EFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh----hhhhhhcchhhhhcc--cHHHHHHHHHHHHcCCcccc
Confidence 45678899999999999999999986 888999999999998 99999999999999999764
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.80 E-value=5 Score=40.66 Aligned_cols=101 Identities=13% Similarity=-0.011 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--CCHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP--RFVR 121 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP--~n~k 121 (776)
+.-..+...|+.+++.||++.|+..|.++...-.. ......+++++-.+.+..+ ++..+...+.+|-.+-. .+..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~--d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFG--DWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhccchHH
Confidence 44567888999999999999999999997775433 1234566777777777777 89998888888866522 2222
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004055 122 ----ALLRRARAFDAIGKYEMAMQDVQVLL 147 (776)
Q Consensus 122 ----Al~~rA~ay~aLGr~deAl~d~~kAL 147 (776)
.....|..+...++|..|-..|-.++
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22333555666788888877776554
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.77 E-value=7.4 Score=46.27 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=84.2
Q ss_pred HHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 50 KEEGNKRFQNK-----DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK-PINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 50 keeGn~lfqkG-----dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
...|..|++.. ++..|+.+|.++-.+... .+.+++|.||+.-. ..++..|..+|..|... .++.|+
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~ 363 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAI 363 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHH
Confidence 34666776632 788899999999888654 46788888888764 24788999999888765 489999
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CChHHHHH
Q 004055 124 LRRARAFDAI----GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL-GPRQEAQQ 175 (776)
Q Consensus 124 ~~rA~ay~aL----Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l-g~~qeA~~ 175 (776)
+++|.||..- -+...|...|.++.... ++.+...++.++... +++..+..
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~ 418 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALA 418 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHH
Confidence 9999998543 47888999999998888 566566666555543 44444433
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.42 E-value=4.3 Score=43.92 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC-----------------------------CCChHHHHHHHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRL-TPKT-----------------------------HPDRAVFHSNRAACLM 95 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkL-dP~~-----------------------------~~d~A~ay~n~A~cy~ 95 (776)
.....+.+..+...|+..+|+......+.. .... ....+.++..+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 345566677788888889999999888881 1110 0135566777777777
Q ss_pred Hc----CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 004055 96 QM----KPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKY-----------------EMAMQDVQVLLGVEPN 152 (776)
Q Consensus 96 ~L----G~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~-----------------deAl~d~~kAL~LdP~ 152 (776)
.+ +.+.++.++..|..|+.++|.+.++++..|..+..+-.. ..|+..|-+++.+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 77 334999999999999999999999999999887655222 2366677777777665
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.08 E-value=9.3 Score=47.00 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCCC---------ChHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNAL-------RLTPKTHP---------DRAVFHSNRAACLMQMKPINYETVIAECTM 111 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KAL-------kLdP~~~~---------d~A~ay~n~A~cy~~LG~gdyeeAi~~~~k 111 (776)
-|++.+.-+-.++|.+.|+++|+++= ++...+++ -...+|..-|+.+-..| +.+.|+..|..
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G--emdaAl~~Y~~ 937 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG--EMDAALSFYSS 937 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc--chHHHHHHHHH
Confidence 46777888888899999999998752 12111210 12466777777777788 99999998887
Q ss_pred HHHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 112 ALQV---------------------QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 112 ALel---------------------dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
|-.. ...+..|-|.+|+-|...|++.+|+..|.+|-.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7432 445678999999999999999999999888744
No 310
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.89 E-value=22 Score=37.82 Aligned_cols=113 Identities=17% Similarity=0.063 Sum_probs=86.7
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc---CCCCHH--HHHHHHHHHHHcCCC
Q 004055 48 ELKEEGNKRFQ----NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM---KPINYE--TVIAECTMALQVQPR 118 (776)
Q Consensus 48 ~LkeeGn~lfq----kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L---G~gdye--eAi~~~~kALeldP~ 118 (776)
.....|..++. .+|+.+|...|.+|........ ..+.++++.+|..- ....+. .|+..+.+|-...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 45667777776 5699999999999999854320 24477888888774 112334 8999999988876
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004055 119 FVRALLRRARAFDA----IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG 168 (776)
Q Consensus 119 n~kAl~~rA~ay~a----LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg 168 (776)
++.+.+.+|.+|.. -.++.+|...|.++-.... ..+.+.++ ++..-|
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 89999999998855 2489999999999999887 88888888 655555
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.61 E-value=1.1 Score=32.93 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
+.++.++|.+|..+| +|++|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g--~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQG--RYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--hcchhhHHHHHHHHH
Confidence 345666666666666 666666666666654
No 312
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.53 E-value=1.7 Score=42.73 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHH-hCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 48 ELKEEGNKRFQNK---DYVGALEQYDNALR-LTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 48 ~LkeeGn~lfqkG---dyeeAle~Y~KALk-LdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..++.+-.+.... |-.+.+..+...++ -.|. .+-.+.+.+|..+++++ +|+.++++++..|+.+|+|..|.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~---~rRe~lyYLAvg~yRlk--eY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE---RRRECLYYLAVGHYRLK--EYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc---cchhhhhhhHHHHHHHh--hHHHHHHHHHHHHhhCCCcHHHH
Confidence 3445555555443 56678899988887 3333 34667788999999999 99999999999999999999987
Q ss_pred HHHHHHHH
Q 004055 124 LRRARAFD 131 (776)
Q Consensus 124 ~~rA~ay~ 131 (776)
-..-.+.-
T Consensus 109 ~Lk~~ied 116 (149)
T KOG3364|consen 109 ELKETIED 116 (149)
T ss_pred HHHHHHHH
Confidence 66655543
No 313
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.44 E-value=18 Score=44.89 Aligned_cols=166 Identities=16% Similarity=0.043 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC----CC
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP-DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ----PR 118 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~-d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld----P~ 118 (776)
..|+..-..|.....+++.+.|+..-+.++...|.+.. ....++...|.+.+-.| +|.+|..+...+.+.. -.
T Consensus 456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G--~~~~Al~~~~~a~~~a~~~~~~ 533 (894)
T COG2909 456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG--ELTQALALMQQAEQMARQHDVY 533 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc--hHHHHHHHHHHHHHHHHHcccH
Confidence 45666667788999999999999999999999997643 35678889999999998 9999999999998873 22
Q ss_pred C--HHHHHHHHHHHHHcCC--HHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHcCChHHHHHHH----hh----CCC
Q 004055 119 F--VRALLRRARAFDAIGK--YEMAMQDVQVLL----GVEPNHRDALEIARRLRTALGPRQEAQQDL----QS----RPS 182 (776)
Q Consensus 119 n--~kAl~~rA~ay~aLGr--~deAl~d~~kAL----~LdP~N~~al~~la~ll~~lg~~qeA~~~l----~k----kl~ 182 (776)
+ ..+.+..+.++...|+ +.+....|...- .-.|-+.........++...-+++.+.... .. .+.
T Consensus 534 ~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~ 613 (894)
T COG2909 534 HLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQ 613 (894)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccc
Confidence 2 3456677888899993 333344443332 223443333333333333222233333322 22 233
Q ss_pred CCCHHHH-HHHHHHHHhCCCccchhHHhhh
Q 004055 183 PAALGAS-AVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 183 P~~~~a~-~~lA~~l~~LG~~eeArk~~KK 211 (776)
|-...+. .+++.+++..|+++.|......
T Consensus 614 ~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 614 PLLSRLALSMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4343333 3789999999999999887665
No 314
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.97 E-value=3.5 Score=51.86 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=89.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 53 GNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM----K-PINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 53 Gn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L----G-~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.+++...+.|++|+..|++.-..-|.-.. --.+.+..|..++.. + +..|.+|+..+.+. .-.|.-+--|+..|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKE-GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCccc-chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 34567788999999999999999986421 134566666665543 2 23688888888754 44677888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG 168 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg 168 (776)
.+|..+|+|++-++.|.-|++..|++|.+-.....+..++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999888877766653
No 315
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.81 E-value=2.7 Score=37.84 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCC-----ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 55 KRFQNKDYVGALEQYDNALRLTPKTHP-----DRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLdP~~~~-----d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
...+.|+|.+|++.+.+.+..-..... ....+..++|.++..+| ++++|+..+++|+.+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G--~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG--HYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 345667777777777777765443211 12344555666666666 666666666666654
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=11 Score=44.83 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred HHCCCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 004055 57 FQNKDYVG-ALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGK 135 (776)
Q Consensus 57 fqkGdyee-Ale~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr 135 (776)
+..+.... |+..|...+.++|.++ .+...++ +...+..++ ....+......++..+|.++.++..+|.+....|.
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~-~llla~~-lsi~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~ 116 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNP-ELLLAAF-LSILLAPLA--DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGL 116 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCH-HHHHHHH-HHhhccccc--cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh
Confidence 33444443 7888888888888762 2222233 566666777 88888999999999999999999999999988887
Q ss_pred HHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 136 YEMAMQDVQV-LLGVEPNHRDALEIA------RRLRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 136 ~deAl~d~~k-AL~LdP~N~~al~~l------a~ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
.-.++..+.. +....|.|..+..-+ +.++..+++..++...+.+ ...|.+++.
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 117 QFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 7666666655 899999998887776 7777778888777776655 455666443
No 317
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=4.8 Score=48.13 Aligned_cols=94 Identities=17% Similarity=0.078 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPR------FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDAL 157 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al 157 (776)
..++.|-|.-++++. +|..+++.|...+.--|. +.+....++.||..+.++|.|+++++.|=+.+|.++-..
T Consensus 354 H~iLWn~A~~~F~~~--~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKME--KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHhhHHHHHHH--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 356778888899999 999999999999987664 467888889999999999999999999999999999888
Q ss_pred HHHHHHHHHcCChHHHHHHHhh
Q 004055 158 EIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 158 ~~la~ll~~lg~~qeA~~~l~k 179 (776)
..+-.+...-+.-.+|+..+..
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHH
Confidence 8777777766777777776654
No 318
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.27 E-value=1.7 Score=50.83 Aligned_cols=79 Identities=24% Similarity=0.179 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAI---GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aL---Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
....|+..|.+++..-|.....|.++|.++++. |+.-.|++++..++++||....+++.++.++..++++.+|+...
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 567789999999999999999999999999875 68888999999999999999999999999999999999999866
Q ss_pred hh
Q 004055 178 QS 179 (776)
Q Consensus 178 ~k 179 (776)
..
T Consensus 469 ~a 470 (758)
T KOG1310|consen 469 WA 470 (758)
T ss_pred HH
Confidence 54
No 319
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.10 E-value=18 Score=39.13 Aligned_cols=125 Identities=14% Similarity=-0.014 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRF------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RD 155 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~ 155 (776)
..|..-|.||...+ +|++|...+.+|.+...+| .++|-..|.....+..+.++...|+++..+.-.+ ..
T Consensus 32 s~yekAAvafRnAk--~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAK--KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34444566777777 8999999888888654333 4667777777778888999999999998874322 11
Q ss_pred HHHHHHHHHHHc--CChHHHHHHHhhC-----CCC---CCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 156 ALEIARRLRTAL--GPRQEAQQDLQSR-----PSP---AALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 156 al~~la~ll~~l--g~~qeA~~~l~kk-----l~P---~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
+--.++++-..+ -+.+.|+..|++. .+- -..+.+.-.+++|..+.++++|-..++|
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 222233332222 3466677766651 111 1223445568889999999999988877
No 320
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=85.95 E-value=1.4 Score=48.62 Aligned_cols=78 Identities=17% Similarity=0.042 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR-RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~-rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
+.++...+..-.+.+ .|.+--..|.++|..+|.|...|.. .+.-|...++++.+...|.++|+++|++|.+|...-+
T Consensus 107 ~k~w~~y~~Y~~k~k--~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 107 PKIWSQYAAYVIKKK--MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred cHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 566666665555566 8999999999999999999999887 4555788899999999999999999999998876554
Q ss_pred H
Q 004055 163 L 163 (776)
Q Consensus 163 l 163 (776)
.
T Consensus 185 ~ 185 (435)
T COG5191 185 M 185 (435)
T ss_pred H
Confidence 3
No 321
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=85.58 E-value=26 Score=39.91 Aligned_cols=130 Identities=9% Similarity=-0.008 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHc
Q 004055 46 AHELKEEGNKRFQ---NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK-------PINYETVIAECTMALQV 115 (776)
Q Consensus 46 A~~LkeeGn~lfq---kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG-------~gdyeeAi~~~~kALel 115 (776)
...-...|.++-+ .|+.++|+..+..++...... .+..+..+|.+|-.+- ....++|+..|.++.++
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~---~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP---DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 3345567777777 999999999999976665443 3778888888875541 22578999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh----------CC-CCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 116 QPRFVRALLRRARAFDAIGKYEMAMQDVQVLL-GV----------EP-NHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 116 dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL-~L----------dP-~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+|+...+ .+.+.++...|...+.....+++. .+ ++ .+...+..+..+....++++.|...+.+
T Consensus 256 ~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 256 EPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred Cccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9765443 666667767665443332222222 11 11 3455666777888889999999998877
No 322
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.49 E-value=3.7 Score=42.93 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 004055 41 IFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK--THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR 118 (776)
Q Consensus 41 ~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~--~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~ 118 (776)
..+..|-.++..|+.-....=+..|+..|.+++..... ...+...+.+.+|..+.++| ++++|+..+.+++...-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg--~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLG--NYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHcCCCC
Confidence 34555666666666666666678899999999887654 23355788999999999999 999999999999986432
Q ss_pred CH-HHHHHHHHH
Q 004055 119 FV-RALLRRARA 129 (776)
Q Consensus 119 n~-kAl~~rA~a 129 (776)
+. ..+..+|+=
T Consensus 198 s~~~~l~~~AR~ 209 (214)
T PF09986_consen 198 SKEPKLKDMARD 209 (214)
T ss_pred CCcHHHHHHHHH
Confidence 22 366666653
No 323
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.03 E-value=17 Score=42.46 Aligned_cols=151 Identities=17% Similarity=0.090 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCCC---
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ-VQPRF--- 119 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-ldP~n--- 119 (776)
-.++.....|.-...-+.|+.|...|..|.++...- ...+.+..|+|..|+..+ +-+ ++.++++ +.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~~nlnlAi~YL~~~--~~e----d~y~~ld~i~p~nt~s 437 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAFCNLNLAISYLRIG--DAE----DLYKALDLIGPLNTNS 437 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHHHHHhHHHHHHHhc--cHH----HHHHHHHhcCCCCCCc
Confidence 346778889999999999999999999999986642 235677889999999987 422 3334443 45543
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-----HHHHHHHHHHHHHcCChHHHHHHHhh-----CC
Q 004055 120 -------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN-H-----RDALEIARRLRTALGPRQEAQQDLQS-----RP 181 (776)
Q Consensus 120 -------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~-N-----~~al~~la~ll~~lg~~qeA~~~l~k-----kl 181 (776)
..++|..|...+..+++.+|.....+.|++.-. + ...+..++.+...+|+..++..-... +.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 347889999999999999999999999998721 1 12344566677778887776653321 12
Q ss_pred CCCCHH---HHHHHHHHHHhCCC
Q 004055 182 SPAALG---ASAVRGAPIAGLGP 201 (776)
Q Consensus 182 ~P~~~~---a~~~lA~~l~~LG~ 201 (776)
-|+.+- ...++...+...|+
T Consensus 518 i~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 518 IPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred CCCchHHHHHHHHHHHHHHHhCc
Confidence 244433 33445555555555
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.95 E-value=1.9 Score=31.66 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
..++..+|.+|...|++++|+..+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998763
No 325
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.74 E-value=15 Score=42.87 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=108.6
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCCC-C---------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCC-----
Q 004055 57 FQNKDYVGALEQYDNALRLTPKTHP-D---------RAVFHSNRAACLMQMKPINYETVIAECTMALQV---QPR----- 118 (776)
Q Consensus 57 fqkGdyeeAle~Y~KALkLdP~~~~-d---------~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---dP~----- 118 (776)
...|-|+.|..+-+++|......+. + ...++=+++.|-+..| +|.+|++....+.+. -|.
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~--~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRG--DYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 3567778888888888876433221 1 2245667888999999 999999988887765 343
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHHHcCChHHHHHHHhhCCCCC---------
Q 004055 119 --FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN-H--RDALEIARRLRTALGPRQEAQQDLQSRPSPA--------- 184 (776)
Q Consensus 119 --n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~-N--~~al~~la~ll~~lg~~qeA~~~l~kkl~P~--------- 184 (776)
.+...+.+|.--...+.|+.|...|..|.++-.. + .....+++..|.+.++.+.-...++. +.|.
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~-i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL-IGPLNTNSLSSQR 442 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh-cCCCCCCcchHHH
Confidence 2445677787777889999999999999987543 3 23445677788887765544333333 2332
Q ss_pred -CHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 185 -ALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 185 -~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
-...+++.|...+.++++.+|+.++.+..
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 12367788999999999999999998876
No 326
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=8.4 Score=44.00 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=86.4
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-C-
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG-K- 135 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG-r- 135 (776)
+..-++.-+.+-..+|+.+|+. ..+++.+..++.+.+.-++..=++.|+++|+.||+|..++-.|-.+..... .
T Consensus 87 k~~~ld~eL~~~~~~L~~npks----Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~ 162 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKS----YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSR 162 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccc
Confidence 3446677888889999999986 788999999999887556889999999999999999888777766654432 2
Q ss_pred --HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 136 --YEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 136 --~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
..+-+++..+++.-++.|..++.....++..+
T Consensus 163 ~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 163 NLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred ccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 56778889999999999999998887777643
No 327
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.60 E-value=4.3 Score=51.83 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK----THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---- 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~----~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---- 115 (776)
..+..+.+.|......+.|..|.+ ..+++.+..+ -|++.+.+|..+|..+.+++ ++++|+..+.+|.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~--d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG--DNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc--chHHHHHhcccceeeechh
Confidence 557888999999999999999988 6666666542 25667999999999999999 999999999998655
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHhhC---
Q 004055 116 ----QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV--------EPNHRDALEIARRLRTALGPRQEAQQDLQSR--- 180 (776)
Q Consensus 116 ----dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L--------dP~N~~al~~la~ll~~lg~~qeA~~~l~kk--- 180 (776)
.|+....|..++...+..++.-.|+..+.+++.+ .|.-.....+++.++.-+++++.|+..++..
T Consensus 1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455789999999999999999999999998876 3444444456777777777777777766541
Q ss_pred ----CCCCCH---HHHHHHHHHHHhCCCccchhHHhhh
Q 004055 181 ----PSPAAL---GASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 181 ----l~P~~~---~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
..|... ..+..+++.....+++.-|..+.+.
T Consensus 1087 ~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1087 NKKVLGPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 233332 2344456666666666655555444
No 328
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=83.34 E-value=4.6 Score=36.41 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=45.8
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCC-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 94 LMQMKPINYETVIAECTMALQVQP-----R----FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 94 y~~LG~gdyeeAi~~~~kALeldP-----~----n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
.++.+ +|..|++.+.+.+..-. . ...+++.+|.++...|++++|+..++.++.+-..
T Consensus 8 ~~~~~--dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSG--DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcC--CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34566 99999888888776522 1 2568899999999999999999999999987553
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.03 E-value=50 Score=33.14 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
...+..+-+... +.+++-..+...--+.|+....-..-|.++...|++++|++.++.+..-.+..+.....++.|+..
T Consensus 13 Li~~~~~aL~~~--d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 13 LIEVLMYALRSA--DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 333444444455 888888877777778999999999999999999999999999999888888888888899999999
Q ss_pred cCChH
Q 004055 167 LGPRQ 171 (776)
Q Consensus 167 lg~~q 171 (776)
+++..
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 88843
No 330
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.95 E-value=24 Score=38.59 Aligned_cols=110 Identities=8% Similarity=0.021 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH-HHHHHHhh
Q 004055 102 YETVIAECTMALQVQPRFVRALLRRARAFDAIG-KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQ-EAQQDLQS 179 (776)
Q Consensus 102 yeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG-r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~q-eA~~~l~k 179 (776)
-+.|++....+|.++|.|-.++--|-.|+..++ ++.+-+..+..++.-+|.|-.++.-...+...+|+.. +.++....
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 356777778889999999998888888887775 7888999999999999999999999999999999876 44444433
Q ss_pred --CCCCCCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 180 --RPSPAALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 180 --kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
..+..+-.++.-+-+++...+.++.-..+.-.
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 34456677788888888888888776666433
No 331
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.90 E-value=18 Score=40.00 Aligned_cols=143 Identities=14% Similarity=0.014 Sum_probs=99.2
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 004055 67 EQYDNALRLTPKTHPDRAVFHSNRAACLMQMKP----------INYETVIAECTMALQVQPRFVRALLRRARAFDAIGKY 136 (776)
Q Consensus 67 e~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~----------gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~ 136 (776)
..|.+.++-+|.+ ..++..+....-.+-. .-.+..+..+.+||+.+|++...++.+-.+...+.+-
T Consensus 6 ~el~~~v~~~P~d----i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVRENPHD----IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHHhCccc----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 4678889999987 7777777665554431 0246778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC---------ChHHHHHHHhhCCC--------CCCH-----HHHHHHH
Q 004055 137 EMAMQDVQVLLGVEPNHRDALEIARRLRTA-LG---------PRQEAQQDLQSRPS--------PAAL-----GASAVRG 193 (776)
Q Consensus 137 deAl~d~~kAL~LdP~N~~al~~la~ll~~-lg---------~~qeA~~~l~kkl~--------P~~~-----~a~~~lA 193 (776)
+....-+++++..+|++..++..+-..... .. -+.+++..+..... +... .....+.
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 999999999999999999888765443332 22 23344444332111 0011 1222336
Q ss_pred HHHHhCCCccchhHHhhhhc
Q 004055 194 APIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 194 ~~l~~LG~~eeArk~~KKa~ 213 (776)
..+...|..+.|-...+...
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHCCchHHHHHHHHHHH
Confidence 66777888888888776644
No 332
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=80.93 E-value=4.3 Score=36.09 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=47.1
Q ss_pred eccCCCCHHHHHHHHHhHCCCC-CceEEEEe-cCCCCeeeecChHHHHHHHHhcccccccCcccccCCCCCcEEEEEEec
Q 004055 306 QMPVNCSFKALREIVSKRFPSS-KSVLIKYK-DNDGDLVTITCTAELRLAESASDSLMTKEPEADKSDSVGMLRLHIVDV 383 (776)
Q Consensus 306 ~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYk-DeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g~~rL~v~e~ 383 (776)
.+|.+++..+|..+|...|+.. ...+|.|+ |.+|..+...++|+-.+..--. ..-++|+|...
T Consensus 19 r~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~---------------~dg~~i~V~D~ 83 (87)
T PF14560_consen 19 RFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGI---------------KDGMRIHVVDT 83 (87)
T ss_dssp EEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT----------------STTEEEEEEE-
T ss_pred EcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCC---------------CCCCEEEEEeC
Confidence 3799999999999999999964 55999999 6777887777665544443222 23489999988
Q ss_pred CC
Q 004055 384 SP 385 (776)
Q Consensus 384 ~~ 385 (776)
+|
T Consensus 84 ~p 85 (87)
T PF14560_consen 84 NP 85 (87)
T ss_dssp T-
T ss_pred CC
Confidence 76
No 333
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=79.97 E-value=6.1 Score=35.20 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=52.3
Q ss_pred eEeeccceeEEe--ccCCCCHHHHHHHHHhHCCC-CCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCC
Q 004055 295 KLVYDHDIRLGQ--MPVNCSFKALREIVSKRFPS-SKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSD 371 (776)
Q Consensus 295 K~~~~~DiR~~~--v~~~~~~~~L~~~v~~kF~~-~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~ 371 (776)
.+......+.+. +|.+++..+|.+++...|+. ....++-|.|.+|..|..-++|+-.++.-..
T Consensus 5 ~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~-------------- 70 (84)
T cd01789 5 NITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPV-------------- 70 (84)
T ss_pred EEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccC--------------
Confidence 333333466666 89999999999999999986 4668887777777777654444444433222
Q ss_pred CCCcEEEEEEecCC
Q 004055 372 SVGMLRLHIVDVSP 385 (776)
Q Consensus 372 ~~g~~rL~v~e~~~ 385 (776)
..-.+|+|+..+|
T Consensus 71 -~dg~~IhVvD~~p 83 (84)
T cd01789 71 -DDGCRIHVIDVSG 83 (84)
T ss_pred -CCCCEEEEEeCCC
Confidence 2336899998776
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.60 E-value=23 Score=35.44 Aligned_cols=85 Identities=18% Similarity=0.025 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
-.+.+.........+..++.......--+.|+. +.+...-|..++..| +|.+|++.++...+-.+..+-+--.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~----~e~d~~dg~l~i~rg--~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNL----KELDMFDGWLLIARG--NYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----cccchhHHHHHHHcC--CHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344555555566899999999998888888987 666777788899998 99999999999999888888888888
Q ss_pred HHHHHHcCCHH
Q 004055 127 ARAFDAIGKYE 137 (776)
Q Consensus 127 A~ay~aLGr~d 137 (776)
+.|++.+|+.+
T Consensus 85 A~CL~al~Dp~ 95 (153)
T TIGR02561 85 ALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCChH
Confidence 99999999864
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.05 E-value=2.8 Score=32.26 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
.+|..+|.+....++|+.|+.+|.++|.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888763
No 336
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.01 E-value=48 Score=35.74 Aligned_cols=122 Identities=18% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHCCCHHHHHHHHHHHHHhCC-CCC---CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CC---C-------
Q 004055 57 FQNKDYVGALEQYDNALRLTP-KTH---PDRAVFHSNRAACLMQMKPINYETVIAECTMALQV----QP---R------- 118 (776)
Q Consensus 57 fqkGdyeeAle~Y~KALkLdP-~~~---~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel----dP---~------- 118 (776)
...|+++.|..+|.|+=.+.+ ..+ ..++..++|.|......+ .+|+.|+..+.+|+++ .+ .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~-~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKK-DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 568999999999999988773 221 246677888888877765 5899999999999887 22 1
Q ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 119 FVRALLRRARAFDAIGKYEM---AMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~de---Al~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
....+..++.+|...+.++. |...++.+-.-.|+.+..+...-.++...++.+.....+.+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 13577888889988887654 44444445555688787776666666666666666555544
No 337
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.66 E-value=8.2 Score=44.31 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=62.8
Q ss_pred HHHcCCCCHHHHHHHHHHHHHc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004055 94 LMQMKPINYETVIAECTMALQV--------QPRF----------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRD 155 (776)
Q Consensus 94 y~~LG~gdyeeAi~~~~kALel--------dP~n----------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~ 155 (776)
+++.+ +|..|+.-|..||++ .|.. +-.--.+..||..+++.+.|+....+.+.++|.+..
T Consensus 186 ~yrqk--~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 186 CYRQK--KYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHhhH--HHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 34444 666666666666665 2222 123346788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q 004055 156 ALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 156 al~~la~ll~~lg~~qeA~~~l 177 (776)
-+...+.|..++.+|-+|...+
T Consensus 264 nHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877644
No 338
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.96 E-value=26 Score=38.44 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+..++..++..+...|+++.++..+++.+.++|-+..++..+-..+...|+...|+..|.+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 5677788888888888888888888888888888888888888888888888888877754
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.71 E-value=7.4 Score=45.23 Aligned_cols=121 Identities=17% Similarity=0.026 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 99 PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 99 ~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
.|+...|-+-...+|+..|..+.....++.++..+|.|+.|++++.-+=.+-..-..+..++-+-+..+++++.|.....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 44999999999999999999999999999999999999999999887766655555666677777778889888876543
Q ss_pred hCCC--CCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 179 SRPS--PAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 179 kkl~--P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
--+. -..+...-+-+-.-..+|-+++|..+.|+-...+|++
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 3111 1222322223333456788899999999977666664
No 340
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.39 E-value=13 Score=40.33 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF 130 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay 130 (776)
.=..+...++++.|...-++.|.++|.+ +.-..-+|.+|.++| .+..|+.++...++.-|+.+.+-..++...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~d----p~eirDrGliY~ql~--c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPED----PYEIRDRGLIYAQLG--CYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCC----hhhccCcHHHHHhcC--CchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3356788899999999999999999998 555677999999999 999999999999999999998877777654
No 341
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.35 E-value=1.6e+02 Score=34.74 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHc----
Q 004055 43 LKRAHELKEEGNKRFQNKD-YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIA--ECTMALQV---- 115 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGd-yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~--~~~kALel---- 115 (776)
.+.++-+...+..+...|. =+.|+..+..+++..|.+ ..+ -|+-.-+.+. -|.+|+. .+.+.+.+
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD----~ec-~n~v~~fvKq---~Y~qaLs~~~~~rLlkLe~fi 447 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYD----IEC-ENIVFLFVKQ---AYKQALSMHAIPRLLKLEDFI 447 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccc----HHH-HHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHH
Confidence 3566777788888888887 667888888888887764 221 1222222222 2444332 22233322
Q ss_pred -----CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC
Q 004055 116 -----QP---RFVRALLRR--ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR 180 (776)
Q Consensus 116 -----dP---~n~kAl~~r--A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk 180 (776)
-| ++...-..+ |..++..|+|.++.-+..=..+++| ++.++..+|.|+....++++|-..+..-
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22 222322333 4456888999999988888889999 8999999999999999999998888653
No 342
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.22 E-value=23 Score=38.77 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
...++..++..+...+ +++.++..+++.+..+|.+-.+|..+-.+|+..|+...|+..|++.-.+
T Consensus 152 ~~~~l~~lae~~~~~~--~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACG--RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567777888888888 9999999999999999999999999999999999999999999887665
No 343
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.20 E-value=8 Score=40.60 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 65 ALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDA 132 (776)
Q Consensus 65 Ale~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~a 132 (776)
|+.+|.+|+.+.|.+ ...|+.+|..+...| ++=.|+-+|-+++-..--++.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~----G~p~nQLAvl~~~~~--~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN----GNPYNQLAVLASYQG--DDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB----SHHHHHHHHHHHHTT---HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC----CCcccchhhhhcccc--chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567788888888876 667777887777777 77777777777776655567777777777666
No 344
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=42 Score=40.10 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=88.9
Q ss_pred HHHHHHHH---HCCCHHHHHHHHHHHHHhCCCC--------CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---
Q 004055 50 KEEGNKRF---QNKDYVGALEQYDNALRLTPKT--------HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--- 115 (776)
Q Consensus 50 keeGn~lf---qkGdyeeAle~Y~KALkLdP~~--------~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--- 115 (776)
.+.|..+| ....|++|...|.-|....+.+ +|.-...+..+|.++...| +.+.|.....++|=.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qg--D~e~aadLieR~Ly~~d~ 316 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQG--DREMAADLIERGLYVFDR 316 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHH
Confidence 33444444 4557889999999888875543 3555667788899999988 988888877777622
Q ss_pred --CCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HcCChHH
Q 004055 116 --QPR-------------------FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN-HRDALEIARRLRT-ALGPRQE 172 (776)
Q Consensus 116 --dP~-------------------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~-N~~al~~la~ll~-~lg~~qe 172 (776)
.|. +..++++.-..+.+-|.+.-|+..|+-.+.++|. ||-+...+-.++. +..+|+-
T Consensus 317 a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqw 396 (665)
T KOG2422|consen 317 ALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQW 396 (665)
T ss_pred HhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHH
Confidence 232 2356777777788889999999999999999998 8766555555544 4445555
Q ss_pred HHHHH
Q 004055 173 AQQDL 177 (776)
Q Consensus 173 A~~~l 177 (776)
-+..+
T Consensus 397 iI~~~ 401 (665)
T KOG2422|consen 397 IIELS 401 (665)
T ss_pred HHHHH
Confidence 44444
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.52 E-value=4.9 Score=47.64 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=83.0
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 004055 57 FQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKY 136 (776)
Q Consensus 57 fqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~ 136 (776)
.-+|+-.+|+.+|..++-..|.-..+ .++..+|.++.++| ...+|--.+..|+.--|....-+|.+|.++..++.+
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~kd--i~lLSlaTiL~RaG--~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~ 299 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNKD--IALLSLATVLHRAG--FSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEY 299 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCccccc--chhhhHHHHHHHcc--cccchhheeehhccCCccccccceeHHHHHHHHhhh
Confidence 35789999999999999998864222 35678999999999 888888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH
Q 004055 137 EMAMQDVQVLLGVEPNHRDALE 158 (776)
Q Consensus 137 deAl~d~~kAL~LdP~N~~al~ 158 (776)
.-.+..|..+++.+|.......
T Consensus 300 N~S~~~ydha~k~~p~f~q~~~ 321 (886)
T KOG4507|consen 300 NHSVLCYDHALQARPGFEQAIK 321 (886)
T ss_pred hhhhhhhhhhhccCcchhHHHH
Confidence 9999999999999997654433
No 346
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.29 E-value=8.4 Score=40.43 Aligned_cols=62 Identities=16% Similarity=-0.053 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 105 VIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 105 Ai~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
|..+|.+|+.+.|.+-..|..+|.++...|+.-.|+-+|-+++...-..+.+..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998776678899999988887
No 347
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=75.88 E-value=89 Score=38.08 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=116.0
Q ss_pred HHCCCHHHHHHHHHHHHHh-CCCCCC-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHH
Q 004055 57 FQNKDYVGALEQYDNALRL-TPKTHP-DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF----VRALLRRARAF 130 (776)
Q Consensus 57 fqkGdyeeAle~Y~KALkL-dP~~~~-d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n----~kAl~~rA~ay 130 (776)
+..|+..+-+..|+.|++. +|.-.+ -...++...|..|-..| +.+.|...+.+|+..+=.. ...|..-|..-
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~--~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG--DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC--cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 4678899999999999984 665432 23578899999999999 9999999999999886433 46778888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH-------------------HHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHH
Q 004055 131 DAIGKYEMAMQDVQVLLGVEPNHR-------------------DALEIARRLRTALGPRQEAQQDLQS--RPSPAALGAS 189 (776)
Q Consensus 131 ~aLGr~deAl~d~~kAL~LdP~N~-------------------~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~ 189 (776)
....+++.|+...++|..+ |.++ -++-.+..+...+|-++.....|.+ .+.-..|..-
T Consensus 436 lrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred HhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 8889999999999988765 3332 2233344555566777777777766 2334456666
Q ss_pred HHHHHHHHhCCCccchhHHhhhhcCC
Q 004055 190 AVRGAPIAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 190 ~~lA~~l~~LG~~eeArk~~KKa~~s 215 (776)
.+.|..+-...-+++|.+.+.|+.+.
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 77788888888899999999998755
No 348
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.81 E-value=1e+02 Score=35.67 Aligned_cols=145 Identities=16% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHCCCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHcC
Q 004055 48 ELKEEGNKRFQNKDYVG-ALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKP----------INYETVIAECTMALQVQ 116 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyee-Ale~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~----------gdyeeAi~~~~kALeld 116 (776)
.....-....+.|.|+. +++.=.+.+..+|.. ..+|..+=.|+....- .-.++-+.....+|+.+
T Consensus 30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~----~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~n 105 (421)
T KOG0529|consen 30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEF----YTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVN 105 (421)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhhCchh----hhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhC
Confidence 34444455556676665 666667777777764 5566655555544320 03455667778899999
Q ss_pred CCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh----HHHHHHHhhC--CCCCCHHH
Q 004055 117 PRFVRALLRRARAFDAIGK--YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPR----QEAQQDLQSR--PSPAALGA 188 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr--~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~----qeA~~~l~kk--l~P~~~~a 188 (776)
|+..-+++.|..++.+.+. +..-++.+.++|+.||.|..++....-+....... .+.+.+..+. -++.+-.+
T Consensus 106 pksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsa 185 (421)
T KOG0529|consen 106 PKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSA 185 (421)
T ss_pred chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhH
Confidence 9999999999999998764 68889999999999999988887766666554432 2333333442 24566666
Q ss_pred HHHHHHHH
Q 004055 189 SAVRGAPI 196 (776)
Q Consensus 189 ~~~lA~~l 196 (776)
+..+..++
T Consensus 186 WhyRs~lL 193 (421)
T KOG0529|consen 186 WHYRSLLL 193 (421)
T ss_pred HHHHHHHH
Confidence 66655433
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.58 E-value=19 Score=37.60 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCChHHHH
Q 004055 103 ETVIAECTMALQVQP--RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN----HRDALEIARRLRTALGPRQEAQ 174 (776)
Q Consensus 103 eeAi~~~~kALeldP--~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~----N~~al~~la~ll~~lg~~qeA~ 174 (776)
..|...+-+ ++..| +.+...+.+|..| ...+.+.|+..+.++|++.+. |++++..++.++..+++++.|-
T Consensus 123 ~~A~~~fL~-~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQ-LEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHH-HcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445554432 23333 3455566666444 366777777777777776543 4677777777777777776654
No 350
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.19 E-value=16 Score=42.40 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~ 144 (776)
+|.+|..++.=..++.| ++.+|..+|.|++...+|++|..++.
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555555555555 55555555555555555555555543
No 351
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=72.37 E-value=29 Score=33.00 Aligned_cols=84 Identities=8% Similarity=-0.045 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHH
Q 004055 90 RAACLMQMKPINYETVIAECTMALQVQPRFV---RALLRRARAFDAIGK-----------YEMAMQDVQVLLGVEPNHRD 155 (776)
Q Consensus 90 ~A~cy~~LG~gdyeeAi~~~~kALeldP~n~---kAl~~rA~ay~aLGr-----------~deAl~d~~kAL~LdP~N~~ 155 (776)
+|.-++..| ++-+|+......+..++++. ..+..-|.+++.+.. +-.+++.|.++..+.|..+.
T Consensus 2 ~A~~~~~rG--nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFARG--NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHcc--CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 355566777 99999999999999888766 445555666655432 23466666667777776655
Q ss_pred HHHHHHHHHHHcCChHHHHH
Q 004055 156 ALEIARRLRTALGPRQEAQQ 175 (776)
Q Consensus 156 al~~la~ll~~lg~~qeA~~ 175 (776)
.++.++.-+-....|+++..
T Consensus 80 ~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 80 SLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 55555544333333344333
No 352
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.19 E-value=60 Score=36.91 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
-+.....++..+|.+++|..|...|...+...|... ....+..++.+|..--.-+|.+|...++..+..
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~--~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGRE--EYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455677888899999999999999999998644431 145677777888776555899999999988765
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.06 E-value=10 Score=28.69 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 004055 121 RALLRRARAFDAIGKYEMAMQD--VQVLLGVEPNH 153 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d--~~kAL~LdP~N 153 (776)
+.++.+|..+...|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3455666666666666666666 33666666554
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.63 E-value=10 Score=41.75 Aligned_cols=59 Identities=24% Similarity=0.186 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHh
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~ 178 (776)
.+.+...+..|...|.+.+|++.+++++.++|-+...+..+..++..+|+--.+...+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 45667778899999999999999999999999999999999999999999777766654
No 355
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.35 E-value=24 Score=39.70 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCC
Q 004055 59 NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP---RFVRALLRRARAFDAIGK 135 (776)
Q Consensus 59 kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP---~n~kAl~~rA~ay~aLGr 135 (776)
.-||..=..+|+-...+-|+ +..-.|+|.+.-+.. -...++.... +|.-+| .+..++-.+|..+.++|+
T Consensus 309 dtDW~~I~aLYdaL~~~apS-----PvV~LNRAVAla~~~--Gp~agLa~ve-~L~~~~~L~gy~~~h~~RadlL~rLgr 380 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPS-----PVVTLNRAVALAMRE--GPAAGLAMVE-ALLARPRLDGYHLYHAARADLLARLGR 380 (415)
T ss_pred CCChHHHHHHHHHHHHhCCC-----CeEeehHHHHHHHhh--hHHhHHHHHH-HhhcccccccccccHHHHHHHHHHhCC
Confidence 34566666667766666665 344566666655543 3444444443 333343 456677778888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 136 YEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 136 ~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
.++|...|++++.+.++..+..++..++
T Consensus 381 ~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 381 VEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 8888888888888888877776665554
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.22 E-value=1.7e+02 Score=35.15 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--
Q 004055 44 KRAHELKEEGNKRF-QNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR-- 118 (776)
Q Consensus 44 e~A~~LkeeGn~lf-qkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~-- 118 (776)
..|......|..|+ ...+++.|..+..|++.+..... .....+.+.++.+|.+.+ ... |+..++++++.--.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~--~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN--PKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC--HHH-HHHHHHHHHHHHhccC
Confidence 56778888888888 67799999999999999875521 123556777889999997 444 99999999987444
Q ss_pred --CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH----HHHHHHcCChHHHHHHHhh------C--
Q 004055 119 --FVRALLRRARA--FDAIGKYEMAMQDVQVLLGVE--PNHRDALEIA----RRLRTALGPRQEAQQDLQS------R-- 180 (776)
Q Consensus 119 --n~kAl~~rA~a--y~aLGr~deAl~d~~kAL~Ld--P~N~~al~~l----a~ll~~lg~~qeA~~~l~k------k-- 180 (776)
.....+++-++ +...+++..|+..++.+..+. +.++.+...+ +.++...+...++...+.. .
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 23333444323 233479999999999998876 4666554432 2333344544444444432 1
Q ss_pred --C--CCCCHHHHHHH--HHHHHhCCCccchhHHhhh
Q 004055 181 --P--SPAALGASAVR--GAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 181 --l--~P~~~~a~~~l--A~~l~~LG~~eeArk~~KK 211 (776)
. .+....++..+ -.++...|++..+....+.
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 12223333333 4455667777788777666
No 357
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.26 E-value=54 Score=37.06 Aligned_cols=114 Identities=18% Similarity=0.014 Sum_probs=82.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 35 VDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 35 ~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
.+-...+...--..++.....+-++|-|..|++..+-.+.++|...| --+.+.+-..-++.+ +|+--+..++....
T Consensus 92 L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP--~g~ll~ID~~ALrs~--~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 92 LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP--LGVLLFIDYYALRSR--QYQWLIDFSESPLA 167 (360)
T ss_pred cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--chhHHHHHHHHHhcC--CHHHHHHHHHhHhh
Confidence 33333344455567788889999999999999999999999999533 223333434444455 88877887776655
Q ss_pred cCCC-----CHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 004055 115 VQPR-----FVRALLRRARAFDAIGKY---------------EMAMQDVQVLLGVEPN 152 (776)
Q Consensus 115 ldP~-----n~kAl~~rA~ay~aLGr~---------------deAl~d~~kAL~LdP~ 152 (776)
...+ .+..-|.+|.|++.+++- +.|...+.+|+..-|.
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 3221 234668889999999998 8999999999999984
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.22 E-value=87 Score=34.62 Aligned_cols=113 Identities=12% Similarity=-0.085 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHcCCHH
Q 004055 61 DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF---DAIGKYE 137 (776)
Q Consensus 61 dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay---~aLGr~d 137 (776)
-.+.-+..|++||+.+|.+ ..++..+-.+..++- +-+.....+.+++..+|++...|..+-... +..-.+.
T Consensus 46 ~~E~klsilerAL~~np~~----~~L~l~~l~~~~~~~--~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDS----ERLLLGYLEEGEKVW--DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHH
Confidence 3567889999999999976 666666666777777 889999999999999999887666554433 3344677
Q ss_pred HHHHHHHHHHhhCCCC---------------H---HHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 138 MAMQDVQVLLGVEPNH---------------R---DALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 138 eAl~d~~kAL~LdP~N---------------~---~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.....|.++|..-..- . .+...+...+...|..+.|+..++.
T Consensus 120 ~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa 179 (321)
T PF08424_consen 120 DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQA 179 (321)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHH
Confidence 8888888887642211 1 1222333445567888888887765
No 359
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.80 E-value=30 Score=35.06 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR---FVRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~---n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
+..++..+|..|.+.| +++.|+..|.++...-.. -...++..-++.+..+++......+.++-.+
T Consensus 35 ir~~~~~l~~~~~~~G--d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIG--DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456666777777776 777777777766554221 1345555566666666777666666666544
No 360
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=68.64 E-value=61 Score=39.68 Aligned_cols=84 Identities=14% Similarity=0.233 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
.+-+++++.|.-++....|+.|.++|.+.-.. -+.+.||+.+. .|.+- . .....-|.+.+.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ecly~le--~f~~L-E---~la~~Lpe~s~ll 855 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQIECLYRLE--LFGEL-E---VLARTLPEDSELL 855 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHHHHHHHHH--hhhhH-H---HHHHhcCcccchH
Confidence 45678899999999999999999999775332 35678888887 76652 2 2233358889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~k 145 (776)
-.+|..+...|-.++|++.|.+
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh
Confidence 9999999999999999998865
No 361
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=67.54 E-value=7.7 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQ 116 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld 116 (776)
.+|..+|.+-+..+ +|++|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~e--~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENE--NFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhc--cHHHHHHHHHHHHHHH
Confidence 46777888888887 8888888888888763
No 362
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=67.40 E-value=26 Score=45.20 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTP----KTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV----- 115 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP----~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel----- 115 (776)
.+..|+..+..+...+++++|+..-.++.-+.- .+++.....|.|++......+ +...|+..+.+|+.+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~--~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVK--NLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhcc--CccchhhhHHHHHHhhcccc
Confidence 455677788889999999999998888776533 234567888999999888888 899999999998876
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 116 ---QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEP--------NHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 116 ---dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP--------~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
.|.-.-...+++.++..+++++.|++..+.|++++- .+...+..++++...++++..|....
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 444455567888889999999999999999998652 23445566677777777776665543
No 363
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=67.17 E-value=18 Score=41.85 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHH----------------HHHHH----cCCCCHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRA----------------ACLMQ----MKPINYETV 105 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A----------------~cy~~----LG~gdyeeA 105 (776)
....+..|...+..++|.+++.++.+||+..-....+.+.++.+.. .||.. +- +.-.+
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~l--e~a~C 108 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLL--ERAAC 108 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHH--HHHHH
Confidence 4467889999999999999999999999863211000011111111 01100 00 23344
Q ss_pred HHHHHHHHHcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004055 106 IAECTMALQVQPRF----------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQ 175 (776)
Q Consensus 106 i~~~~kALeldP~n----------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~ 175 (776)
+..|...+-..|.. -..|..+=.+|++.|++..|++.....|--+|++..+..++......++...+-+.
T Consensus 109 l~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l~ 188 (471)
T KOG4459|consen 109 LRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDELT 188 (471)
T ss_pred HHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCccccc
Confidence 55555554444433 14566677789999999999999999999999999999988887766666544433
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhCCCccchhH
Q 004055 176 DLQSRPSPAALGASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 176 ~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk 207 (776)
.+ .+..-..+++++.-++..+++...-.
T Consensus 189 Dl----E~~~~~~~Fir~v~~y~~~d~~~~v~ 216 (471)
T KOG4459|consen 189 DL----ERREHEQWFIRGVRLYSGEDPRQCVP 216 (471)
T ss_pred cc----ccchHHHHHHHHhhhccccCchhcch
Confidence 33 23345566777766665555554433
No 364
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.63 E-value=1.2e+02 Score=31.70 Aligned_cols=129 Identities=17% Similarity=0.049 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC----HHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF----VRA 122 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n----~kA 122 (776)
-.-+..+..+.+.+..++|+..|...-+-.-.+.| ..+....|.+..+.| +-..|+.+|+.+-.-.|-- -.+
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at~~a~kg--dta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYP--VLARMRAATLLAQKG--DTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHHHHhhcc--cHHHHHHHHHHHhccCCCcchhhHHH
Confidence 34556677888889999999999876554433322 345566677777777 9999999999877655422 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLL-GVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL-~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.++-|.++...|-|+.-..-++..- .-+|--..+...++....+.|++..|..+|..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 6777888888899987766655422 23444467777888888889999999998876
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.76 E-value=18 Score=39.88 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
++...+..|...| .+.+|+..|++++.++|-+...+..+-..|..+|+--.|...|.+.
T Consensus 281 llgkva~~yle~g--~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAG--KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556677777 9999999999999999999999999999999999988888887653
No 366
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.06 E-value=7.6 Score=26.81 Aligned_cols=23 Identities=35% Similarity=0.224 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~ 144 (776)
+++.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665543
No 367
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.79 E-value=87 Score=39.09 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLT 76 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLd 76 (776)
..+...+..|+-+|++|+|++|..+|-++|...
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 346678889999999999999999999998864
No 368
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.74 E-value=47 Score=39.20 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHhh--C
Q 004055 104 TVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP-RQEAQQDLQS--R 180 (776)
Q Consensus 104 eAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~-~qeA~~~l~k--k 180 (776)
.-...|+.|+..-+.+.+.|........+.+.+.+--..|.++|..+|+|+++|...+.-....+. .+.|...+.+ +
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445678889999899999988887666666779999999999999999999999999988888777 6667777766 6
Q ss_pred CCCCCHHHHH
Q 004055 181 PSPAALGASA 190 (776)
Q Consensus 181 l~P~~~~a~~ 190 (776)
..|+++..+.
T Consensus 169 ~npdsp~Lw~ 178 (568)
T KOG2396|consen 169 FNPDSPKLWK 178 (568)
T ss_pred cCCCChHHHH
Confidence 7888887654
No 369
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.28 E-value=19 Score=35.56 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004055 118 RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPR 170 (776)
Q Consensus 118 ~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~ 170 (776)
.-....+.++...+..|++.-|...++.++..+|+|..+....+.++..++..
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 34678888999999999999999999999999999999999999998887653
No 370
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.98 E-value=17 Score=30.83 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
++.|..+...|..+=+.|+|.+|+.+|.+++..
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 467888999999999999999999999998886
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.61 E-value=2.3e+02 Score=32.25 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=81.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------------
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--------------- 115 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--------------- 115 (776)
+.-....+.++...-+..-..||.++|.. +.+|..+|.--.. -..+|...+.+||+.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eC----A~AyvLLAEEEa~----Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNEC----ATAYVLLAEEEAT----TIVDAERLFKQALKAGETIYRQSQQCQHQS 260 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchh----hhHHHhhhhhhhh----hHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 44455667778888888889999999987 7777776643211 233444444444433
Q ss_pred --------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChHHHHHHHhh---C
Q 004055 116 --------QPRFVRALL--RRARAFDAIGKYEMAMQDVQVLLGVEPNH--RDALEIARRLRTALGPRQEAQQDLQS---R 180 (776)
Q Consensus 116 --------dP~n~kAl~--~rA~ay~aLGr~deAl~d~~kAL~LdP~N--~~al~~la~ll~~lg~~qeA~~~l~k---k 180 (776)
...+...|+ ++|.|..++|+..+|+..++...+--|-. ..++.++-..+..+..+.+....+.+ .
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 112344444 56889999999999999999888777732 34555566666666666655554443 2
Q ss_pred CCCCCHHH
Q 004055 181 PSPAALGA 188 (776)
Q Consensus 181 l~P~~~~a 188 (776)
..|..+..
T Consensus 341 slPkSA~i 348 (556)
T KOG3807|consen 341 SLPKSAAI 348 (556)
T ss_pred cCcchHHH
Confidence 33555443
No 372
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.17 E-value=1.1e+02 Score=36.94 Aligned_cols=114 Identities=18% Similarity=0.022 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 35 VDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPD----RAVFHSNRAACLMQMKPINYETVIAECT 110 (776)
Q Consensus 35 ~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d----~A~ay~n~A~cy~~LG~gdyeeAi~~~~ 110 (776)
.+.-..+...---.++-.-..+-++|-|..|.+...-.+.++|...|. ..+.|+.+|.-|..+- ++-++....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI--~~~~~~e~~n 408 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWII--ELSNEPENMN 408 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHH--HHHHHHHhhc
Confidence 443333333444456677778889999999999999999999984331 2334444444444443 3333333222
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Q 004055 111 MALQVQPRFVRALLRRARAFDAIGK---YEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 111 kALeldP~n~kAl~~rA~ay~aLGr---~deAl~d~~kAL~LdP~ 152 (776)
. |..-|+.. .-..+|+.|..... -..|+.++.+|+.+.|.
T Consensus 409 ~-l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 409 K-LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred c-HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2 23334432 22445555555554 56799999999999994
No 373
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.65 E-value=19 Score=31.31 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
+++.|..+..+|...=..|+|++|+.+|.+++..
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999988875
No 374
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=60.48 E-value=17 Score=32.54 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=34.0
Q ss_pred cceeEeecc-ceeEEeccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCee
Q 004055 292 RPLKLVYDH-DIRLGQMPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLV 342 (776)
Q Consensus 292 ~~vK~~~~~-DiR~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlV 342 (776)
+++||.-.+ -+|+-++. -|+.+|+.++.++|... ..+.| +-++||..|
T Consensus 3 kp~kv~~~~r~~k~Gv~A--~sL~eL~~K~~~~l~~~~~~~~l-vL~eDGT~V 52 (78)
T PF02017_consen 3 KPFKVRNHDRSVKKGVAA--SSLEELLEKACDKLQLPEEPVRL-VLEEDGTEV 52 (78)
T ss_dssp EEEEEEETTSSCEEEEEE--SSHHHHHHHHHHHHT-SSSTCEE-EETTTTCBE
T ss_pred CcEEEecCCCCceEeEEc--CCHHHHHHHHHHHhCCCCcCcEE-EEeCCCcEE
Confidence 566666333 45555544 48999999999999977 66777 778999665
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.58 E-value=3.3e+02 Score=34.48 Aligned_cols=129 Identities=15% Similarity=0.033 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 39 SSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT-----HPDRAVFHSNRAACLMQMKPINYETVIAECTMAL 113 (776)
Q Consensus 39 ~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~-----~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL 113 (776)
++.......--...+-.+....+|.+|-....++-.-.+.. ....+.....+|.+....+ +++.|+..++.++
T Consensus 408 ~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~--~~e~a~~lar~al 485 (894)
T COG2909 408 AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG--DPEEAEDLARLAL 485 (894)
T ss_pred HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 34455556666777888888999999999998888876651 1234566677788888888 9999999999999
Q ss_pred HcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHH--HHHHHHHHHHcCC
Q 004055 114 QVQPRF-----VRALLRRARAFDAIGKYEMAMQDVQVLLGVEP----NHRDA--LEIARRLRTALGP 169 (776)
Q Consensus 114 eldP~n-----~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP----~N~~a--l~~la~ll~~lg~ 169 (776)
..=|.+ ..++...|.+..-.|+++.|+.....+.++.. -...+ ......++...|+
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 987764 45788889999999999999999999988843 22222 2334556667774
No 376
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=59.28 E-value=1.2e+02 Score=37.45 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=77.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHH------HHHhCCC-CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH------Hc-
Q 004055 50 KEEGNKRFQNKDYVGALEQYDN------ALRLTPK-THPDRAVFHSNRAACLMQMKPINYETVIAECTMAL------QV- 115 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~K------ALkLdP~-~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL------el- 115 (776)
-..|..+-+..+++.|+++|.+ ||++..- .|.....+--.-|.-+.+.| +|+.|+..|-.|- +.
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~--q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG--QLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH--hHHHHHHHHHHhhhHHHHHHHH
Confidence 3445666677788888887764 4444221 11112222222334444555 6666666554321 11
Q ss_pred -----------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 116 -----------------QPR-FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 116 -----------------dP~-n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
+.+ -+..|-..|.-|..+|+|+-|.+.|.++=. ..-....+-+.|++.+|....
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHH
Confidence 001 122344456666677777777777654311 112223344556666666555
Q ss_pred hhCCCCCCH-HHHHHHHHHHHhCCCccchhHHh
Q 004055 178 QSRPSPAAL-GASAVRGAPIAGLGPCLPARPVG 209 (776)
Q Consensus 178 ~kkl~P~~~-~a~~~lA~~l~~LG~~eeArk~~ 209 (776)
..-..|... ..|...+.-+-..|+|.+|++.+
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 443445443 34455577777778887777664
No 377
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.14 E-value=49 Score=32.62 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=20.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK 98 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG 98 (776)
+...+..++..|+|.-|+...+.++..+|++ ..+...++.+|.++|
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n----~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDN----EEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444 344444444444443
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.54 E-value=40 Score=35.75 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQP--R----FVRALLRRARAFDAIGKYEMAMQDVQVLL 147 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP--~----n~kAl~~rA~ay~aLGr~deAl~d~~kAL 147 (776)
...+...+|.-|+.+| +|++|+..+..++..-. + ....+..+..|+..+|+.+..+...-+.+
T Consensus 177 ~~~l~~~~A~ey~~~g--~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLG--DYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4778889999999999 99999999999987633 2 35678888999999999999888776554
No 379
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.51 E-value=52 Score=34.93 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHH
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGPRQEAQQ 175 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~~qeA~~ 175 (776)
....+.+|.-|+.+|+++.|+..|+.+....... ..++..+..|...+|+.+..+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445678888888888888888888886654322 3455566777777787766554
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.30 E-value=63 Score=29.11 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHh
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR---ARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r---A~ay~aLGr~deAl~d~~kAL~ 148 (776)
+.-.|.-++... +..+|+..+.++|+..++....+..+ ..+|...|+|.+++.+..+=+.
T Consensus 9 ~ie~GlkLY~~~--~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQN--ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccc--hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555 88888888888888887776554444 4467777888888776654443
No 381
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=57.18 E-value=31 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHH--HHHHHHhCCC
Q 004055 48 ELKEEGNKRFQNKDYVGALEQ--YDNALRLTPK 78 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~--Y~KALkLdP~ 78 (776)
.++..|-.++++|+|++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566677777777777777 4366665553
No 382
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.23 E-value=37 Score=39.06 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=58.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKT-----HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~-----~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
..-..+.-.|||..|+...+- |.++... ++-...+++.+|-||+.|+ +|..|++.+...|-.--+....+..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlr--RY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLR--RYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344556788999999887654 3332211 1123577889999999999 9999999998776532111111222
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 004055 126 RARAFDA-IGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 126 rA~ay~a-LGr~deAl~d~~kAL~LdP~ 152 (776)
+..-+-. ....+.....+.-++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 2222222 23344455555556666774
No 383
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=54.84 E-value=4.6e+02 Score=31.74 Aligned_cols=166 Identities=11% Similarity=-0.019 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ-PRFVRALLRR 126 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-P~n~kAl~~r 126 (776)
.|+.....-...|++....-.|++++---..+ ...|.+.+.-....| +..-|-..+.++.+.. |.-+...+.-
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y----~efWiky~~~m~~~~--~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALY----DEFWIKYARWMESSG--DVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh----HHHHHHHHHHHHHcC--chhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 45555555567778888888888777654444 456666666666666 7777777777777753 4555566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH---HHHhh----CCCCCCHHH-HHHHHHH-HH
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQ---QDLQS----RPSPAALGA-SAVRGAP-IA 197 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~---~~l~k----kl~P~~~~a-~~~lA~~-l~ 197 (776)
+..-...|+++.|...++++..--|+...+-.....+..+.|..+.+. ..+.. +.++.-... +...++. +.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 666777788888888888888777887777777777777777777666 23222 122222221 2222322 23
Q ss_pred hCCCccchhHHhhhhcCCCCCC
Q 004055 198 GLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 198 ~LG~~eeArk~~KKa~~s~P~~ 219 (776)
-.++.+.|+..+.++...-|..
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDC 474 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCcc
Confidence 3566677777777766555553
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.40 E-value=2.8e+02 Score=29.03 Aligned_cols=113 Identities=13% Similarity=0.029 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-----HHHHHcCChHHH
Q 004055 101 NYETVIAECTMALQVQPR--FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR-----RLRTALGPRQEA 173 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~--n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la-----~ll~~lg~~qeA 173 (776)
..++|+..+...-.-.-. -..+.++.|.+....|+-..|+.+|..+-.-.| .|.+...++ .++.-.|.|++.
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHH
Confidence 455666655544333222 245677778888888888888888887665544 333333333 334445777776
Q ss_pred HHHHhhC---CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 174 QQDLQSR---PSPAALGASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 174 ~~~l~kk---l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
....+.- -+|--..++-.+|..-++.|++..|+..+.....
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6555442 2333344566678888888888888888887554
No 385
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=53.52 E-value=95 Score=36.06 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHH-------HHHcCC-----CCHHHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH----PDRAVFHSNRAAC-------LMQMKP-----INYETVIA 107 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~----~d~A~ay~n~A~c-------y~~LG~-----gdyeeAi~ 107 (776)
.........|..+|..|+|.+|+..|+.+|...|-.. .+...+.-.+..| -+.+.. ...+...+
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR 281 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR 281 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence 3344456689999999999999999999999765321 1112222222222 122110 01223333
Q ss_pred HHHHHH-----HcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 004055 108 ECTMAL-----QVQPRFVRALLRRAR-AFDAIGKYEMAMQDVQVLLGVEPNHRDA 156 (776)
Q Consensus 108 ~~~kAL-----eldP~n~kAl~~rA~-ay~aLGr~deAl~d~~kAL~LdP~N~~a 156 (776)
.+..|. ++.|.+...-++.|. ..+++++|..|-...++.|++.|....+
T Consensus 282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 344332 334444444444444 4578899999999999999999977544
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.99 E-value=48 Score=26.35 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLL 147 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL 147 (776)
+.+|.+|..+|+.+.|...++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 445555666666666665555555
No 387
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=52.90 E-value=32 Score=29.64 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
+++.|..+...|..+=..|+|++|+.+|.+++..
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577888888999999999999999999888875
No 388
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.58 E-value=32 Score=30.52 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
.+.|..+...+..+=+.|+|.+|+.+|+++|.+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456777777888888888888888888877775
No 389
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.25 E-value=32 Score=30.49 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLT 76 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLd 76 (776)
...|..+...+..+=+.|+|++|+.+|..+|.+.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4678888889999999999999999999998863
No 390
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.11 E-value=2e+02 Score=37.10 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
.-|.+.|..-.+.+...+|++.|-+| + + +..|...-..-.+.| .|++-+.++..|-+.-. -+..-.-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika---d--D----ps~y~eVi~~a~~~~--~~edLv~yL~MaRkk~~-E~~id~eL 1172 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA---D--D----PSNYLEVIDVASRTG--KYEDLVKYLLMARKKVR-EPYIDSEL 1172 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc---C--C----cHHHHHHHHHHHhcC--cHHHHHHHHHHHHHhhc-CccchHHH
Confidence 34555666666666666666666332 1 1 334555555555665 66666666665544311 11111122
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
-.+|.+.+++.+-...+ .-|++..+...-.+|+. -+.++.|.-.|. +...+..++..+..+|+|..|-
T Consensus 1173 i~AyAkt~rl~elE~fi-----~gpN~A~i~~vGdrcf~-~~~y~aAkl~y~------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI-----AGPNVANIQQVGDRCFE-EKMYEAAKLLYS------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHhchHHHHHHHh-----cCCCchhHHHHhHHHhh-hhhhHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHH
Confidence 23344555554433332 23555555444444433 345555555542 4556677888899999999988
Q ss_pred HHhhhhcC
Q 004055 207 PVGKKAGA 214 (776)
Q Consensus 207 k~~KKa~~ 214 (776)
...+|+.+
T Consensus 1241 D~aRKAns 1248 (1666)
T KOG0985|consen 1241 DAARKANS 1248 (1666)
T ss_pred HHhhhccc
Confidence 88888653
No 391
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=51.21 E-value=5.2e+02 Score=31.27 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=26.5
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 131 DAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 131 ~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+-.++..-|.+.|+-.|+..++.+.........+..+++-..+...|++
T Consensus 412 ~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 412 YCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3345555555555555555555555555555555555555555555544
No 392
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.20 E-value=24 Score=40.58 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 90 RAACLMQMKPINYETVIAECTMALQVQ---------PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 90 ~A~cy~~LG~gdyeeAi~~~~kALeld---------P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
+...+..+| +|..|+....- +.++ +.+...+|..|.||+-++||.+|++.|..+|-.
T Consensus 128 LlRvh~LLG--DY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 128 LLRVHCLLG--DYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHhcc--CHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788 99999987642 2222 235678999999999999999999999988753
No 393
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.09 E-value=5.3e+02 Score=31.28 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=112.4
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCC---ChHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHP---DRAVFHSN--RAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDA 132 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~---d~A~ay~n--~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~a 132 (776)
........+..|+..|+ .|..|. +.+.+-.. ........| ++......+.+.+--=..+...|++.++-...
T Consensus 267 ~s~~~~~kr~~fE~~Ik-rpYfhvkpl~~aql~nw~~yLdf~i~~g--~~~~~~~l~ercli~cA~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIK-RPYFHVKPLDQAQLKNWRYYLDFEITLG--DFSRVFILFERCLIPCALYDEFWIKYARWMES 343 (577)
T ss_pred hhHhHHHHHHhhhhhcc-ccccccCcccHHHHHHHHHHhhhhhhcc--cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Confidence 33455666777777776 354431 33444333 334445556 99999999999988777899999999999999
Q ss_pred cCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCChHHHHHHHhh---CCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 133 IGKYEMAMQDVQVLLGV-EPNHRDALEIARRLRTALGPRQEAQQDLQS---RPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 133 LGr~deAl~d~~kAL~L-dP~N~~al~~la~ll~~lg~~qeA~~~l~k---kl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
.|+.+.|-..+.++.++ .|..+.++...+......|++..|...++. .. |....+-.........+|..+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 99999999888888876 567778887888888889999999999987 45 888888888888889999988887
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=50.71 E-value=1.9e+02 Score=34.85 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CCC---------------ChHHHHHHHHHHHHHcCCCCHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPK-------THP---------------DRAVFHSNRAACLMQMKPINYE 103 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~-------~~~---------------d~A~ay~n~A~cy~~LG~gdye 103 (776)
+-.+.--|......+..+.|..++.++++...+ .++ ....+++.++.|.+-++ ++.
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~--~~~ 378 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRG--DWS 378 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc--CHH
Confidence 344566688888888888899999888885322 111 12345666777777788 999
Q ss_pred HHHHHHHHHHHcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004055 104 TVIAECTMALQVQ---P------RFVRALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 104 eAi~~~~kALeld---P------~n~kAl~~rA~ay~aLGr~deAl~d~~ 144 (776)
.|......+.... | -.+..+|..|..+...|+++.|+..|.
T Consensus 379 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 379 KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 9988888776552 2 247789999999999999999999998
No 395
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.59 E-value=90 Score=39.88 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP---------- 117 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP---------- 117 (776)
.+...|+.+|..|.|+.|.-.|.. .+-|..+|..+..+| +|..|.+..++|-...-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~------------vSN~a~La~TLV~Lg--eyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN------------VSNFAKLASTLVYLG--EYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH------------hhhHHHHHHHHHHHH--HHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 467889999999999999999954 344778899999999 99999998887733210
Q ss_pred -C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004055 118 -R--------------FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG 168 (776)
Q Consensus 118 -~--------------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg 168 (776)
. +..-+-.+-..|...|-|++-+..++.+|.++..+......++.++.+..
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 0 12233344455777889999999999999999888888888888888764
No 396
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=49.25 E-value=39 Score=29.09 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
+++.|..+...|...=..|+|++|+.+|..|+..
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788888888888999999999999888875
No 397
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=48.09 E-value=22 Score=24.49 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECT 110 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~ 110 (776)
+++++|..+..+| ++++|...+.
T Consensus 3 a~~~la~~~~~~G--~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQG--DPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHh
Confidence 4667777777777 7777776654
No 398
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.80 E-value=35 Score=30.11 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
..|..+...|..+=+.|+|.+|+.+|.++|..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55778888888888888998888888888775
No 399
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=47.63 E-value=38 Score=29.91 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004055 30 NSNGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNA 72 (776)
Q Consensus 30 ~~~~~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KA 72 (776)
+...+.......++++|..|.+.|.-++.+||+..|+..+.=+
T Consensus 19 ~~~s~~~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 19 PEGSPLYDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp --TS---HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445566777889999999999999999999999999887543
No 400
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=47.18 E-value=62 Score=28.97 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=35.6
Q ss_pred cceeEeecc-ceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHH
Q 004055 292 RPLKLVYDH-DIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLA 353 (776)
Q Consensus 292 ~~vK~~~~~-DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A 353 (776)
+++||.-.+ -+|+-++. -|+.+|+.++.++|+....-..=|-++||..| ++||.=..
T Consensus 3 kp~kV~~~~r~~k~GV~A--~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeV---ddEeYF~t 60 (78)
T cd01615 3 RPFKVCDSDRSRKKGVAA--SSLEELLSKACEKLKLPSAPVTLVLEEDGTEV---DDEEYFQT 60 (78)
T ss_pred CCEEEecCCCCeeEEEEc--CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEE---ccHHHHhc
Confidence 556666322 24444433 37999999999999974443334666789544 56665433
No 401
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.02 E-value=46 Score=34.88 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHHH
Q 004055 63 VGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR----FVRALLRRARAFDAIGKYEM 138 (776)
Q Consensus 63 eeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~----n~kAl~~rA~ay~aLGr~de 138 (776)
..|...| |++......+.+.+.+.+|..|.+. +.++|+..+.++|++.+. |+..+..++.+|+.+|+++.
T Consensus 123 ~~A~~~f---L~~E~~~~l~t~elq~aLAtyY~kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRF---LQLEGTPELETAELQYALATYYTKR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHH---HHHcCCCCCCCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 5677777 4444443335588999999988866 799999999999998543 58999999999999999998
Q ss_pred HH
Q 004055 139 AM 140 (776)
Q Consensus 139 Al 140 (776)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 402
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.07 E-value=1.7e+02 Score=33.90 Aligned_cols=119 Identities=12% Similarity=-0.061 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHc----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH----HHHHHHHHHHH
Q 004055 101 NYETVIAECTMALQV----QPR-----FVRALLRRARAFDAIGKYEMAMQDVQVLLGVE--PNHR----DALEIARRLRT 165 (776)
Q Consensus 101 dyeeAi~~~~kALel----dP~-----n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld--P~N~----~al~~la~ll~ 165 (776)
+|.+|...-+..+.- +.+ ..+.|+.+..+|...|+...-...+...+... .+|. .....+-+.+.
T Consensus 141 ~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL 220 (493)
T KOG2581|consen 141 EYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYL 220 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHh
Confidence 888888766665432 111 35788889999999999766555555544332 1232 23333444445
Q ss_pred HcCChHHHHHHHhhCCCCC------CHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 166 ALGPRQEAQQDLQSRPSPA------ALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 166 ~lg~~qeA~~~l~kkl~P~------~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
-.+.++.|.....+...|. .+++.+.+|++..-+++|..|.+++-.+....|.+
T Consensus 221 ~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 5577888888777644332 34455667999999999999999999988777764
No 403
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=45.96 E-value=57 Score=29.17 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=32.0
Q ss_pred cceeEee-ccceeEEeccCCCCHHHHHHHHHhHCCCCC-ceEEEEecCCCCee
Q 004055 292 RPLKLVY-DHDIRLGQMPVNCSFKALREIVSKRFPSSK-SVLIKYKDNDGDLV 342 (776)
Q Consensus 292 ~~vK~~~-~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~-~~~iKYkDeDGDlV 342 (776)
+++||.- ..-+|+-++. -|+.+|+.+..++|+... .++| |-++||..|
T Consensus 3 kp~kV~~~~rs~k~GV~A--~sL~eL~~K~~~~l~l~~~~~~l-~L~eDGTeV 52 (77)
T cd06535 3 KCVKIRSLNSAQKYGVAA--KNLKELLRKGCRLLQLPCAGSRL-CLYEDGTEV 52 (77)
T ss_pred CceEEecCCCCeeEeEEc--CCHHHHHHHHHHHhCCCCCCcEE-EEecCCcEe
Confidence 4555542 2344444433 379999999999999754 4444 567899988
No 404
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.26 E-value=5.5e+02 Score=29.50 Aligned_cols=155 Identities=18% Similarity=0.079 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHH-
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPI------------NYETVIAECTMA- 112 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~g------------dyeeAi~~~~kA- 112 (776)
.++..|+.+|-.|||+.|...|..+.+=.-.+. ...+.++=..|.|++.++.- -++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 578889999999999999999999887433221 01233344455566665521 123444444442
Q ss_pred ---HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC-----CHHHHHHHHHHH--HHcCChHHHHHHHhhC
Q 004055 113 ---LQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV--EPN-----HRDALEIARRLR--TALGPRQEAQQDLQSR 180 (776)
Q Consensus 113 ---LeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L--dP~-----N~~al~~la~ll--~~lg~~qeA~~~l~kk 180 (776)
......-.++.+..+.++...|.+.+|...+-+.... +.+ ..-++..++.++ .... .
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~-----------~ 358 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSN-----------R 358 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccC-----------C
Confidence 1111233456777777888889888877777666655 222 223333344444 1110 0
Q ss_pred CCCC-----CHHHHH-HHHHHHHhCCCccchhHHhhhhc
Q 004055 181 PSPA-----ALGASA-VRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 181 l~P~-----~~~a~~-~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+.|. -...+. +-|.-+...|....|...++++.
T Consensus 359 ~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~ 397 (414)
T PF12739_consen 359 PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQAL 397 (414)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111 011223 33788888999999999988864
No 405
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=44.24 E-value=57 Score=27.47 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=32.1
Q ss_pred ceeEeecc-ceeEEeccCCCCHHHHHHHHHhHCCCC--CceEEEEec
Q 004055 293 PLKLVYDH-DIRLGQMPVNCSFKALREIVSKRFPSS--KSVLIKYKD 336 (776)
Q Consensus 293 ~vK~~~~~-DiR~~~v~~~~~~~~L~~~v~~kF~~~--~~~~iKYkD 336 (776)
+|+|...+ ..-.+.|..+.++..|++.++++.+.. ..+++.|..
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG 48 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDG 48 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECC
Confidence 45666422 244445799999999999999988754 469998854
No 406
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=44.04 E-value=42 Score=29.54 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
++..|..+..+|...=..|+|++|+..|..+|+.
T Consensus 2 ~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 2 YLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677888888899999999999999999998886
No 407
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=43.22 E-value=4.3e+02 Score=34.75 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcC---------------------
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMK--------------------- 98 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG--------------------- 98 (776)
.....+..|..|+.+...|+|.+|+..|..|+.+.....+ =.+.++=.++.|.+.++
T Consensus 238 ~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 3456788999999999999999999999999998654321 01222222222222110
Q ss_pred ----------------------------------------CCCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHH
Q 004055 99 ----------------------------------------PINYETVIAECTMALQV----QPR--FVRALLRRARAFDA 132 (776)
Q Consensus 99 ----------------------------------------~gdyeeAi~~~~kALel----dP~--n~kAl~~rA~ay~a 132 (776)
+..+++|+..|.++... .|. +.++.++.++.+..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 11467888888888633 222 46788999999888
Q ss_pred cC--------------------CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHH
Q 004055 133 IG--------------------KYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGPRQEA 173 (776)
Q Consensus 133 LG--------------------r~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~~qeA 173 (776)
.. .-.++...+.+++.+...+ ..++..++.+|..+|-..+.
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 88 7888888888888765532 34566677888888765443
No 408
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=43.10 E-value=2.6e+02 Score=32.17 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-PDRAVFHSNRAACLMQMKPINYETVIAECTM 111 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~k 111 (776)
......+..+|++++|..|...|..++...+... ......+..++.||..--.-+|.+|...++.
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4445567799999999999999999999865321 1345677888888887654589999999875
No 409
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.04 E-value=41 Score=29.81 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
++.+..+..+|..-=..|+|++|+..|..||+.
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 357778888888888888999999999888885
No 410
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=42.79 E-value=8.1 Score=40.33 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred cceeEeecc-ce-eEEeccCCCCHHHHHHHHHhHC---CCC------------------CceEEEEecCCCCeeeecChH
Q 004055 292 RPLKLVYDH-DI-RLGQMPVNCSFKALREIVSKRF---PSS------------------KSVLIKYKDNDGDLVTITCTA 348 (776)
Q Consensus 292 ~~vK~~~~~-Di-R~~~v~~~~~~~~L~~~v~~kF---~~~------------------~~~~iKYkDeDGDlVTi~s~d 348 (776)
-.|||+... .| |.|-|-.--+|.+|...+.+-| ... ..+.|-|.|.|||+..++|.
T Consensus 110 ~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~- 188 (215)
T PF02309_consen 110 SYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDV- 188 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecCC-
Confidence 367887633 33 5566777789999999999999 221 24789999999999988864
Q ss_pred HHHHHHHhc
Q 004055 349 ELRLAESAS 357 (776)
Q Consensus 349 DL~~A~~~~ 357 (776)
=++|-+.++
T Consensus 189 PW~~F~~~v 197 (215)
T PF02309_consen 189 PWEEFVKSV 197 (215)
T ss_dssp ---------
T ss_pred CHHHHHHHh
Confidence 577777666
No 411
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=42.30 E-value=73 Score=28.28 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=34.7
Q ss_pred ceeEee-ccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHH
Q 004055 293 PLKLVY-DHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAE 354 (776)
Q Consensus 293 ~vK~~~-~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~ 354 (776)
++||.- ..-+|+-++. -|+.+|+.++.++|+......-=|-++||..| +++|.=..+
T Consensus 2 p~kV~~~~r~~k~GV~A--~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~V---ddEeyF~tL 59 (74)
T smart00266 2 PFKVRDHDRNVRKGVAA--SSLEELLSKVCDKLALPDSPVTLVLEEDGTIV---DDEEYFQTL 59 (74)
T ss_pred CEEEecCCCCeeEEEEc--CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEE---ccHHHHhcC
Confidence 445532 2234444433 37999999999999976443333567789544 666654433
No 412
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.78 E-value=1.5e+02 Score=31.98 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N 153 (776)
...+||.....-++.+|.+......+-..|+-.|++..|+.-++-+-.++|++
T Consensus 16 sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 16 SLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred cHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 55555555555555555555555555555555566666666666555666554
No 413
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.65 E-value=52 Score=28.89 Aligned_cols=33 Identities=33% Similarity=0.338 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
++.|..+..+|...=..|+|++|+.+|..+|..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467788888888888999999999999888875
No 414
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.32 E-value=1.1e+02 Score=29.98 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----CC---C----hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKT----HP---D----RAVFHSNRAACLMQMKPINYETVIAECTMAL--- 113 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~----~~---d----~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL--- 113 (776)
.+...|+..++.+++-.++-.|++|+.+.-.- .. + ......|+|..+..+| +-+-.+.+++.|-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~g--d~~yELkYLqlASE~V 80 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQG--DSDYELKYLQLASEKV 80 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcC--ChHHHHHHHHHHHHHH
Confidence 46678999999999999999999999864321 11 1 1223457888888888 7777777776553
Q ss_pred -HcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCC
Q 004055 114 -QVQPRFVRALLRRARA-FDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 114 -eldP~n~kAl~~rA~a-y~aLGr~deAl~d~~kAL~LdP~ 152 (776)
.+-|..+.. ...+ ...+|--..|+-+| ++..|+
T Consensus 81 ltLiPQCp~~---~C~afi~sLGCCk~ALl~F---~KRHPN 115 (140)
T PF10952_consen 81 LTLIPQCPNT---ECEAFIDSLGCCKKALLDF---MKRHPN 115 (140)
T ss_pred HHhccCCCCc---chHHHHHhhhccHHHHHHH---HHhCCC
Confidence 344432211 1111 23455556666555 345553
No 415
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=41.28 E-value=58 Score=27.14 Aligned_cols=45 Identities=7% Similarity=0.121 Sum_probs=36.6
Q ss_pred cceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCC-CceEEEEec
Q 004055 292 RPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSS-KSVLIKYKD 336 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkD 336 (776)
++|.|.++..+.-+.++.+.+..+|.++|..+++.. ...+|.|+.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 46 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKG 46 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCC
Confidence 357778888888888999999999999999998743 447888874
No 416
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=40.67 E-value=52 Score=40.01 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=45.7
Q ss_pred ccCCCCHHHHHHHHHhHCCCCCceEEEEecCCC-----CeeeecChHHHHHHHHhc
Q 004055 307 MPVNCSFKALREIVSKRFPSSKSVLIKYKDNDG-----DLVTITCTAELRLAESAS 357 (776)
Q Consensus 307 v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDG-----DlVTi~s~dDL~~A~~~~ 357 (776)
+|-++++.|+++..-+.=++.+.+.|||-| || -||.+.|+++-+-|+...
T Consensus 875 ~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd-~G~pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 875 FPFDVTLEDIVEFFNDYEPDPNSIRIRRND-DGVPTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred CCccccHHHHHHHhcccccCCCceeEeecC-CCCcccceeEeecCHHHHHhhhhcc
Confidence 699999999999999988899999999999 88 799999999999998655
No 417
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=40.19 E-value=43 Score=29.64 Aligned_cols=43 Identities=33% Similarity=0.657 Sum_probs=29.3
Q ss_pred EEEEecCCCCee-eecChHHHHHHHHhcccccccCcccccCCCCCcEEEEEEecCCCCCCCchh
Q 004055 331 LIKYKDNDGDLV-TITCTAELRLAESASDSLMTKEPEADKSDSVGMLRLHIVDVSPEQEPPLLE 393 (776)
Q Consensus 331 ~iKYkDeDGDlV-Ti~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g~~rL~v~e~~~~~~~~~~~ 393 (776)
.|+--|+||.++ .|+-.+-|++|-.. .|-+++|+|...||.+.
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A~~~--------------------~lDLV~v~~~~~PPVcK 57 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLAKEK--------------------GLDLVEVSPNADPPVCK 57 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHHHHT--------------------T-EEEEEETTSSS-EEE
T ss_pred EEEEECCCCcEeceEEHHHHHHHHHHc--------------------CCcEEEEcCCCCCCeEE
Confidence 355569999999 66667777777753 35688888999999884
No 418
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=40.18 E-value=21 Score=40.23 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
.......+...++.+.|..|+..-..+++.++.. ..+|+.+++.|+.+. ++++|++++..+....|++....-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~----tka~~Rr~~~~~~~~--~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK----TKAHYRRGQAYKLLK--NYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhh----CcHHHHHHhHHHhhh--chhhhHHHHHHhhccCcchHHHHHH
Confidence 3344455666677777777877777777766665 788999999999999 9999999999999999998765444
Q ss_pred HHHH
Q 004055 126 RARA 129 (776)
Q Consensus 126 rA~a 129 (776)
+...
T Consensus 349 ~~~~ 352 (372)
T KOG0546|consen 349 LENV 352 (372)
T ss_pred HHHh
Confidence 4433
No 419
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=39.85 E-value=3.5e+02 Score=31.64 Aligned_cols=30 Identities=13% Similarity=-0.112 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 117 PRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
.++..-|-++|......|+++.|...|+++
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 346778888888888888888888888774
No 420
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.45 E-value=3.2e+02 Score=31.23 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----------CCCC----------------C---ChHHHHHHHHHHHHHcCCC
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLT----------PKTH----------------P---DRAVFHSNRAACLMQMKPI 100 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLd----------P~~~----------------~---d~A~ay~n~A~cy~~LG~g 100 (776)
.+.|..++..|+|.+....+..+=... |... + +...+++.+|.-||...
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~n-- 139 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLN-- 139 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhc--
Confidence 567888888899888777665543321 1110 1 24567788899999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 004055 101 NYETVIAECTMALQVQ 116 (776)
Q Consensus 101 dyeeAi~~~~kALeld 116 (776)
+++.|.-++++|.+..
T Consensus 140 D~~~ArVEfnRan~rQ 155 (449)
T COG3014 140 DSAKARVEFNRANERQ 155 (449)
T ss_pred chhhhHHHHHHHHHHH
Confidence 9999999999998763
No 421
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.55 E-value=1.3e+02 Score=34.92 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------CCC
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ--------PRF 119 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld--------P~n 119 (776)
.+.+.|.-|..-|+++.|+..|.++=.. -++.......+.|.-.+-..++ +|-.-..+.++|..-- .-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~--nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMG--NWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhc--chhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 4567788888899999999999883332 2221123455666666666677 8888887777776541 012
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
++.....|.+...+++|..|...|-.+
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456666777888888888888887654
No 422
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.54 E-value=4e+02 Score=33.99 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----CCChHHHHHHHHHH--HH----------HcCCCCHHHH-
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT----HPDRAVFHSNRAAC--LM----------QMKPINYETV- 105 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~----~~d~A~ay~n~A~c--y~----------~LG~gdyeeA- 105 (776)
+.....-.+.|..+...|.|.+|++.|..+|-.-|-. ..+.+.+.-.+-.| |+ .++.++...+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 3445567789999999999999999999999887732 12222222222222 21 1222245555
Q ss_pred -HHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 004055 106 -IAECTMALQVQPRFVR-ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDAL 157 (776)
Q Consensus 106 -i~~~~kALeldP~n~k-Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al 157 (776)
+..|=.-+.+.|-+.. ++..--..+++++++..|-....+.|++-|..+.+.
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 3344444566665544 444444568899999999999999999999877663
No 423
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.06 E-value=68 Score=27.18 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAE 108 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~ 108 (776)
...|..+|..|+|=+|-+.++.+....+....+.-..+..+|.++.....|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 46788999999999999999999986664422333445555555444433488777654
No 424
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=36.97 E-value=29 Score=31.90 Aligned_cols=58 Identities=16% Similarity=0.336 Sum_probs=35.8
Q ss_pred EeeccceeEEe---ccCCC-CHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhc
Q 004055 296 LVYDHDIRLGQ---MPVNC-SFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESAS 357 (776)
Q Consensus 296 ~~~~~DiR~~~---v~~~~-~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~ 357 (776)
++||.|+-..+ +|++- ||.=|.-.|.+||| ..+|.+.|-|-+++-- ++++-++|....
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp-~~~f~~~YiDi~~p~~---~~~~~~~a~~I~ 62 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYP-DQPFEFTYIDIENPPE---NDHDQQFAERIL 62 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-T-TS-EEEEEEETTT-------HHHHHHHHHHH
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCC-CCceEEEEEecCCCCc---cHHHHHHHHHHH
Confidence 46788887776 35543 78889999999999 6799999999776532 255666666544
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=36.83 E-value=86 Score=21.18 Aligned_cols=27 Identities=15% Similarity=-0.066 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 135 KYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 135 r~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
+++.|...|++++...|.++.++....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555556666655555555554443
No 426
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=36.50 E-value=2.7e+02 Score=30.02 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=56.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
.....+.+.+...+|+...+.-++..|.+ +.+...+=+.|.-+| +|.+|...|+.+-++.|.+..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtd----a~~RhflfqLlcvaG--dw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTD----AGGRHFLFQLLCVAG--DWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcc----ccchhHHHHHHhhcc--hHHHHHHHHHHHhhcCcccch
Confidence 34457899999999999999999999998 666666777888888 999999999999999998765
No 427
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=36.21 E-value=1.4e+02 Score=38.22 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----C
Q 004055 60 KDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAI-----G 134 (776)
Q Consensus 60 GdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aL-----G 134 (776)
..|.+|+..|++.-. .|. .+-=|...|.+|..++ +|++-+..+..|++..|..+..-..+-.+-+++ .
T Consensus 533 ~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (932)
T PRK13184 533 RDFTQALSEFSYLHG-GVG----APLEYLGKALVYQRLG--EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK 605 (932)
T ss_pred HHHHHHHHHHHHhcC-CCC----CchHHHhHHHHHHHhh--hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH
Confidence 356667766666332 233 2556899999999999 999999999999999998876433333222222 2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHH
Q 004055 135 KYEMAMQDVQVLLGVEPNHRDAL 157 (776)
Q Consensus 135 r~deAl~d~~kAL~LdP~N~~al 157 (776)
+...|+...--++..-|......
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 606 HRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHHHHHHHHHHHHHhCcccccch
Confidence 34456666677778888765443
No 428
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=35.67 E-value=1.1e+02 Score=26.22 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=37.6
Q ss_pred eecc-ceeEEeccCCCCHHHHHHHHHhHCCCCCc--eEEEE-ecCCCCeeeec
Q 004055 297 VYDH-DIRLGQMPVNCSFKALREIVSKRFPSSKS--VLIKY-KDNDGDLVTIT 345 (776)
Q Consensus 297 ~~~~-DiR~~~v~~~~~~~~L~~~v~~kF~~~~~--~~iKY-kDeDGDlVTi~ 345 (776)
++-| -++.+.|..+++-.+|.+.|.++.+.... |-|.| .|.+|..+=+.
T Consensus 2 ~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~ 54 (80)
T PF09379_consen 2 RLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLD 54 (80)
T ss_dssp EESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-
T ss_pred CCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceecc
Confidence 4434 44677799999999999999999986544 99999 78888774443
No 429
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.46 E-value=36 Score=38.01 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRA-ACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A-~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
.|..-.+-..+.|-|..--..|.+++...|.+ +.+|...+ --|...+ ++..|...++++|+++|+++..|+-
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n----vdlWI~~c~~e~~~~a--ni~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN----VDLWIYCCAFELFEIA--NIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----ceeeeeeccchhhhhc--cHHHHHHHHHhhhccCCCCchHHHH
Confidence 44444445556668888889999999999998 66655422 2334444 9999999999999999999886654
No 430
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=35.42 E-value=4.4e+02 Score=29.01 Aligned_cols=124 Identities=11% Similarity=0.067 Sum_probs=81.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcCCCCHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHP-DRAVFHSNRAACLMQMKPINYE----TVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~-d~A~ay~n~A~cy~~LG~gdye----eAi~~~~kALeldP~n~kAl~~r 126 (776)
.-..+.+.++|++=-..|.+..+-..+..+ +....+...+.+...+. ... .-...++.=+...|++.-+++.+
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~--~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~ 83 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMD--SVVDAWQARLAVLKAWVAACPKSYHAHLAM 83 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcc--hhhhHHHhHHHHHHHHHHHCCCChHHHHHH
Confidence 456788999999998899888765443211 11211222222222222 111 22333444467799999999988
Q ss_pred HHHHHHc----------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 127 ARAFDAI----------------------GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 127 A~ay~aL----------------------Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
|.++... ...+.|..++.+++.++|....+...+-.+-..+|...=-...+
T Consensus 84 g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l~ 156 (277)
T PF13226_consen 84 GMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAALF 156 (277)
T ss_pred HHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHHH
Confidence 8877552 22567899999999999999999999999888888866544444
No 431
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=35.15 E-value=59 Score=25.82 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
.+++|.+|+.+| +++.|...++.++.
T Consensus 2 kLdLA~ayie~G--d~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMG--DLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence 367999999999 99999999999995
No 432
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.85 E-value=2.9e+02 Score=38.51 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CC----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ-PR---- 118 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-P~---- 118 (776)
..+.-|.+.+......|+++.|-...-+|.+..+ +.++.-+|..+.+.| +-..|+..++..++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~------~~i~~E~AK~lW~~g--d~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL------PEIVLERAKLLWQTG--DELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc------chHHHHHHHHHHhhc--cHHHHHHHHHHHHHhhcccccCC
Confidence 5577788888888889999999999988888874 567888999998988 9999999999998663 22
Q ss_pred ------------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 119 ------------FVRALLRRARAFDAIGKY--EMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 119 ------------n~kAl~~rA~ay~aLGr~--deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
..++.+..+.-....+++ ..-+..|..+.++.|....-++.++..+.
T Consensus 1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 123555556555566654 34678889999999977666666664444
No 433
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.37 E-value=72 Score=28.30 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 138 MAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 138 eAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
+|++.+.+++...|+++.-.....++...+
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 344445556667788776555555554443
No 434
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.13 E-value=5.1e+02 Score=30.29 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=66.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 55 KRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG 134 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG 134 (776)
...-+|+|+.++.... +=++.|.-| ...+..++..+.+.| -++.|+..+ .++...+.+ ..++|
T Consensus 270 ~av~~~d~~~v~~~i~-~~~ll~~i~---~~~~~~i~~fL~~~G--~~e~AL~~~--------~D~~~rFeL---Al~lg 332 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIA-ASNLLPNIP---KDQGQSIARFLEKKG--YPELALQFV--------TDPDHRFEL---ALQLG 332 (443)
T ss_dssp HHHHTT-HHH-----H-HHHTGGG-----HHHHHHHHHHHHHTT---HHHHHHHS--------S-HHHHHHH---HHHCT
T ss_pred HHHHcCChhhhhhhhh-hhhhcccCC---hhHHHHHHHHHHHCC--CHHHHHhhc--------CChHHHhHH---HHhcC
Confidence 3456788888766663 233344431 344666677777777 777776644 344544444 46899
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC
Q 004055 135 KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR 180 (776)
Q Consensus 135 r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk 180 (776)
+++.|++..+ ..+++..|..++.+....|+.+-|...+++.
T Consensus 333 ~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 333 NLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp -HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999997753 3558999999999999999999999999874
No 435
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=32.82 E-value=1.4e+02 Score=26.84 Aligned_cols=58 Identities=24% Similarity=0.189 Sum_probs=37.3
Q ss_pred ccceeEeecc-ceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHH
Q 004055 291 WRPLKLVYDH-DIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAE 354 (776)
Q Consensus 291 ~~~vK~~~~~-DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~ 354 (776)
.+++||.-.+ -+|+-++. -|+.+|+.++.++|+....+.| |-++||.. .++||.=..+
T Consensus 2 ~kp~kV~~~~rs~k~GV~A--~sL~eL~~K~~~~l~l~~~~~l-vL~eDGT~---Vd~EeyF~tL 60 (79)
T cd06538 2 PRPFRVSNADRSLRKGIMA--DSLEDLLNKVLDALLLDCISSL-VLDEDGTG---VDTEEFFQAL 60 (79)
T ss_pred CCcEEEecCCCceeEeEEc--CCHHHHHHHHHHHcCCCCccEE-EEecCCcE---EccHHHHhhC
Confidence 4566765322 34444433 3799999999999998655444 66779954 4666654444
No 436
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.86 E-value=2.9e+02 Score=32.51 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-------CChHHHHHHHHHHHHHcCC----CCHHHHHHHHHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-------PDRAVFHSNRAACLMQMKP----INYETVIAECTM 111 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-------~d~A~ay~n~A~cy~~LG~----gdyeeAi~~~~k 111 (776)
+=++-.+.+.|..+..+..|.+|+..+-.|=+...... +..+.+...+-+||+.++. -+-+.-+.-|++
T Consensus 160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~k 239 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARK 239 (568)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHH
Confidence 34667789999999999999999987765544322110 1236666777889988861 022222333333
Q ss_pred HHHc-------------CCCC-HH-----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 112 ALQV-------------QPRF-VR-----ALLRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 112 ALel-------------dP~n-~k-----Al~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
-+.. .+.. -+ .++.-|..+++.|+-++|...++.+..
T Consensus 240 gf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 240 GFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3322 1111 22 344448888999999999999988754
No 437
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.74 E-value=1.2e+02 Score=36.25 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004055 67 EQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR--FVRALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 67 e~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~--n~kAl~~rA~ay~aLGr~deAl~d~~ 144 (776)
+.........|++ +...++.|..+..+| +.+.|+...+..+...-+ ..-.++-+|.++..+.+|..|-.++.
T Consensus 254 ~~Ll~~~~~~p~g----a~wll~~ar~l~~~g--~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 254 KALKKYRKRYPKG----ALWLLMEARILSIKG--NSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHhHHHHHhCCCC----ccHHHHHHHHHHHcc--cHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333334455555 566666666666666 566666666666551111 13356666777777777777777776
Q ss_pred HHHhhCCCCHHHHHHHH
Q 004055 145 VLLGVEPNHRDALEIAR 161 (776)
Q Consensus 145 kAL~LdP~N~~al~~la 161 (776)
.....+-=....+..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 66665554444444443
No 438
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.81 E-value=4e+02 Score=28.55 Aligned_cols=96 Identities=20% Similarity=0.069 Sum_probs=54.5
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHHcCCCC-HHHHH-HHHHHHHH-c-CCCCHHH-
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKTHP--------DRAVFHSNRAACLMQMKPIN-YETVI-AECTMALQ-V-QPRFVRA- 122 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~~~--------d~A~ay~n~A~cy~~LG~gd-yeeAi-~~~~kALe-l-dP~n~kA- 122 (776)
+|.-|+|+.|+....-||...-.-|. .++.-.+.-|......| . ++-.. ..+..... . -|+...|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag--~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAG--ESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 46889999999999999997543321 12222333333344444 2 11111 11111111 1 1333444
Q ss_pred -HHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCC
Q 004055 123 -LLRRARAFD---------AIGKYEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 123 -l~~rA~ay~---------aLGr~deAl~d~~kAL~LdP~N 153 (776)
|-..|..+. ..+++..|+..+++|+.++|+-
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 444455552 4568889999999999999863
No 439
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=30.54 E-value=3.9e+02 Score=33.25 Aligned_cols=137 Identities=13% Similarity=0.002 Sum_probs=81.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--QPRFVRALLRRARA 129 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--dP~n~kAl~~rA~a 129 (776)
++..----|+|++|...| |..+.++ ++ -..++++| +|-...+.++..-.- |..-..|+..+|..
T Consensus 740 ~aei~~~~g~feeaek~y---ld~drrD---LA------ielr~klg--DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~ 805 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLY---LDADRRD---LA------IELRKKLG--DWFRVYQLIRNGGSDDDDEGKEDAFRNIGET 805 (1189)
T ss_pred hHhHhhhhcchhHhhhhh---hccchhh---hh------HHHHHhhh--hHHHHHHHHHccCCCcchHHHHHHHHHHHHH
Confidence 344444557788888877 3334332 11 12345555 766655544321111 11224688888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHHh
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVG 209 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~~ 209 (776)
+..+..+++|.++|.+.-.. ..+..++..+..+.+-.... +.-|++....-.+|.++...|-+++|-..+
T Consensus 806 fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~la--~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 806 FAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEVLA--RTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHHHH--HhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 88888999999888764322 23445555554444322211 123667777778888888888888888777
Q ss_pred hhh
Q 004055 210 KKA 212 (776)
Q Consensus 210 KKa 212 (776)
.+.
T Consensus 876 Lr~ 878 (1189)
T KOG2041|consen 876 LRR 878 (1189)
T ss_pred Hhc
Confidence 664
No 440
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.51 E-value=1.8e+02 Score=29.28 Aligned_cols=51 Identities=24% Similarity=0.116 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
.....++...+.+...| ++..+.+++.++..+|+.++|.+...++..+-|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34555666677777778 7889999999999999999999999999999993
No 441
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.40 E-value=89 Score=27.95 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLT 76 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLd 76 (776)
.+.|..+.+.|..+=..|+.+.|+.+|+++++..
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 3567777777777777788888888888887754
No 442
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.12 E-value=4.6e+02 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHcCCCCHHHHHHHHHHHHHcC
Q 004055 95 MQMKPINYETVIAECTMALQVQ 116 (776)
Q Consensus 95 ~~LG~gdyeeAi~~~~kALeld 116 (776)
+..| +|+.++.+|.+|..+-
T Consensus 97 i~~~--dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 97 IKKG--DYDQAINDYKKAKSLF 116 (182)
T ss_pred HHcC--cHHHHHHHHHHHHHHH
Confidence 3445 7777777777776653
No 443
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=5.6e+02 Score=30.01 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--c--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQ--V--QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRD 155 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe--l--dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~ 155 (776)
.+.+.+.+=.||+.-+ .|++|-....++.- . +..++..+|-+|++..-.++|..|..++-+|+...|++..
T Consensus 208 qavLiN~LLr~yL~n~--lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNK--LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHHHHhhhH--HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 4555555666777777 88888777666541 1 1134677888899999999999999999999999998543
No 444
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=29.83 E-value=1.1e+03 Score=28.81 Aligned_cols=155 Identities=8% Similarity=-0.087 Sum_probs=92.0
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCC
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK-PINYETVIAECTMALQVQPR-FVRALLRRARAFDAIGK 135 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP~-n~kAl~~rA~ay~aLGr 135 (776)
..-.-.+|...|+++|...-.. ...+|+.++..--..- -..++.....+++++.+.-. ..-+|...-..-.+..-
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~---~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKE---NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG 381 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh
Confidence 3445567888888888766543 2555665554433222 01367777778877776332 23344444444455556
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 136 YEMAMQDVQVLLGVEPNHRDALEIARRL-RTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 136 ~deAl~d~~kAL~LdP~N~~al~~la~l-l~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
...|...|.+|-+.--.-..++...+.+ +...++..-|...|.- +.-++.+....-....+..+++-.-||..+++.
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 6777777777765443332333222222 3456777777777765 444666666666666777788888888888887
Q ss_pred cCC
Q 004055 213 GAP 215 (776)
Q Consensus 213 ~~s 215 (776)
.++
T Consensus 462 l~s 464 (656)
T KOG1914|consen 462 LTS 464 (656)
T ss_pred Hhc
Confidence 766
No 445
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.04 E-value=2.7e+02 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK 78 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~ 78 (776)
.++++....+|...+-.|||..|.....++-+..+.
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 456777788888888888888888888888666443
No 446
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.65 E-value=1.6e+02 Score=26.52 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=35.6
Q ss_pred cceeEe-eccceeEEeccCCCCHHHHHHHHHhHCCCCC-ceEEEEecCCCCeeeecChHHHHHHH
Q 004055 292 RPLKLV-YDHDIRLGQMPVNCSFKALREIVSKRFPSSK-SVLIKYKDNDGDLVTITCTAELRLAE 354 (776)
Q Consensus 292 ~~vK~~-~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~-~~~iKYkDeDGDlVTi~s~dDL~~A~ 354 (776)
|++||. +..-+|+-++. -|+.+|+.++.++|.... .+.|- -+||| |+.+++|.=..+
T Consensus 3 kpfkV~~~~r~~k~GV~A--~sL~EL~~K~~~~l~~~~~~~~lv-L~eDG---T~Vd~EeyF~~L 61 (78)
T cd06539 3 RPFRVSNHDRSSRRGVMA--SSLQELISKTLDALVITSGLVTLV-LEEDG---TVVDTEEFFQTL 61 (78)
T ss_pred CcEEEecCCCCceEEEEe--cCHHHHHHHHHHHhCCCCCCcEEE-EeCCC---CEEccHHHHhhC
Confidence 345553 23345555544 379999999999999743 44443 45688 455667664444
No 447
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=27.56 E-value=46 Score=31.22 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=21.5
Q ss_pred ceeEEeccCCCCHHHHHHHHHhHCCCC
Q 004055 301 DIRLGQMPVNCSFKALREIVSKRFPSS 327 (776)
Q Consensus 301 DiR~~~v~~~~~~~~L~~~v~~kF~~~ 327 (776)
|-..+.||.++++.+|+..||++....
T Consensus 33 dk~KfLvp~~~tv~qf~~~ir~rl~l~ 59 (104)
T PF02991_consen 33 DKKKFLVPKDLTVGQFVYIIRKRLQLS 59 (104)
T ss_dssp SSSEEEEETTSBHHHHHHHHHHHTT--
T ss_pred CccEEEEcCCCchhhHHHHhhhhhcCC
Confidence 445566899999999999999999754
No 448
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.69 E-value=1.6e+02 Score=19.79 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
+++.|...|.+++...|.+...+...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34444444444444444444444433
No 449
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=26.49 E-value=3.4e+02 Score=30.35 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
..-+|+..+..++..+|.|....+.+.++|..+|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 455677777777777777777777777777777777777777754
No 450
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.92 E-value=6.6e+02 Score=28.64 Aligned_cols=125 Identities=18% Similarity=0.088 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCC---CHHHHH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQPRFV--RALLRRARAFD--AIGKYEMAMQDVQVLLGVEPN---HRDALE 158 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~--kAl~~rA~ay~--aLGr~deAl~d~~kAL~LdP~---N~~al~ 158 (776)
.....+.-++..+ +|..|...+...+..-|... ..+..++.+|. ..-+|.+|...+++++...-. ....+.
T Consensus 133 ~~~~~a~~l~n~~--~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~ 210 (379)
T PF09670_consen 133 REWRRAKELFNRY--DYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLK 210 (379)
T ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 3455566666666 99999999999988533333 35566656654 457899999999998876322 233333
Q ss_pred HHHHHHHHcCChHHHHHHHhhCC-CC--CCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 159 IARRLRTALGPRQEAQQDLQSRP-SP--AALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 159 ~la~ll~~lg~~qeA~~~l~kkl-~P--~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
.+..+...+.............. .+ .-...++.-+.--...|+|+.|-..+=++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~ 267 (379)
T PF09670_consen 211 ELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRA 267 (379)
T ss_pred HHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33333333322222222111111 11 11122223344445678888877665554
No 451
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=25.62 E-value=9.7e+02 Score=26.77 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CC-----hHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH----PD-----RAVFHSNRA-ACLMQMKPINYETVIAECTMALQVQ 116 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~----~d-----~A~ay~n~A-~cy~~LG~gdyeeAi~~~~kALeld 116 (776)
.-+-+-+..++-..||..|++..+++++...++. +. .--.++-+| +++..|+ ++.+++...-+-.+.-
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmn--rWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMN--RWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHh--hHHHHHHHHHHHhcCc
Confidence 3444556778889999999999999999874321 11 111112222 4566777 7777777766666554
Q ss_pred CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHH-----HHHHHHcCChHHHHHHH
Q 004055 117 PRFVRALLRRARA-FDAIGKYEMAMQDVQVLLGVEPNHRDA--LEIA-----RRLRTALGPRQEAQQDL 177 (776)
Q Consensus 117 P~n~kAl~~rA~a-y~aLGr~deAl~d~~kAL~LdP~N~~a--l~~l-----a~ll~~lg~~qeA~~~l 177 (776)
.+.+.-.+.++.+ |.+.+++...+. +-.+.-.+|+|... +..+ -+++.=+|.+.+|.+..
T Consensus 114 EklPpkIleLCILLysKv~Ep~amle-v~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 114 EKLPPKILELCILLYSKVQEPAAMLE-VASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred ccCCHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4444444555554 455666654443 44455566766322 2222 23333356666666655
No 452
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.30 E-value=1e+03 Score=27.28 Aligned_cols=132 Identities=17% Similarity=0.072 Sum_probs=86.3
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK---PINYETVIAECTMALQVQPRFVRALLRRARAFDAIG 134 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG---~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG 134 (776)
..+-..++.....+++....-.+ ..+...++.|+-.-. .-++..-...|+....+.|. +.+-++++.++....
T Consensus 268 ~r~lI~eg~all~rA~~~~~pGP---YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~ 343 (415)
T COG4941 268 DRALIDEGLALLDRALASRRPGP---YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMRE 343 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhh
Confidence 34445667777778887754332 455666777776542 33677777777777777774 555577777777777
Q ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHH
Q 004055 135 KYEMAMQDVQVLLGV--EPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRG 193 (776)
Q Consensus 135 r~deAl~d~~kAL~L--dP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA 193 (776)
-...++..+.....- -....-++...+.++.++|+..+|...|.+ .+.++.....+++.
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 777777777755543 224455666778888889999998888877 34455555555443
No 453
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=25.14 E-value=85 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=26.3
Q ss_pred ceeEeecc----ceeEEeccCCCCHHHHHHHHHhHCCCCCc
Q 004055 293 PLKLVYDH----DIRLGQMPVNCSFKALREIVSKRFPSSKS 329 (776)
Q Consensus 293 ~vK~~~~~----DiR~~~v~~~~~~~~L~~~v~~kF~~~~~ 329 (776)
++||...+ =-|+|.||.++||.+|-..|+.-|+-...
T Consensus 6 ~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~ 46 (179)
T PF07929_consen 6 QLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWDDD 46 (179)
T ss_dssp EEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT----
T ss_pred EEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcCCC
Confidence 45555422 27999999999999999999999995544
No 454
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.87 E-value=7.6e+02 Score=25.69 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcc-------CCc-hhHHH--HHhHhhHHHHhhhhh
Q 004055 550 YDWVKEKYSLAKEKYEEALLI-------KPD-FYEGL--LALGQQQFEMAKLHW 593 (776)
Q Consensus 550 ~~~~~~~y~~a~~~ye~a~~i-------kpd-f~e~~--~a~g~q~fe~akl~w 593 (776)
+...++.|+++.+.|+.|+.. ||. .=|+- |.-....|.++-|..
T Consensus 103 vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~~~L~~~Rk~f~~~sldy 156 (200)
T cd07603 103 VKESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEATNILTATRSCFRHTALDY 156 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666653 763 22222 222335566665553
No 455
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=24.81 E-value=2.3e+02 Score=25.64 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=36.1
Q ss_pred cceeEee-ccceeEEeccCCCCHHHHHHHHHhHCCCC---CceEEEEecCCCCeeeecChHHHHHHH
Q 004055 292 RPLKLVY-DHDIRLGQMPVNCSFKALREIVSKRFPSS---KSVLIKYKDNDGDLVTITCTAELRLAE 354 (776)
Q Consensus 292 ~~vK~~~-~~DiR~~~v~~~~~~~~L~~~v~~kF~~~---~~~~iKYkDeDGDlVTi~s~dDL~~A~ 354 (776)
+++||.- ..-+|+-++.. |+.+|+.++.++|+.. ..+.| |-++||. +.+++|.=..+
T Consensus 3 kpfkV~~~~r~~k~GV~A~--sL~eL~~K~~~~l~l~~~~~~~~l-vL~eDGT---~VddEeyF~tL 63 (80)
T cd06536 3 KPCVVCNVSRQKQHGVAAS--SLEELRIKACESLGFDSSSAPITL-VLAEDGT---IVEDEDYFLCL 63 (80)
T ss_pred CceEEecCCCCeeEeEEcC--CHHHHHHHHHHHhCCCCCCCceEE-EEecCCc---EEccHHHHhhC
Confidence 4555542 33445544433 7999999999999876 23555 4566894 45667664444
No 456
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.59 E-value=1.5e+02 Score=27.56 Aligned_cols=58 Identities=17% Similarity=0.362 Sum_probs=41.9
Q ss_pred EeeccceeEEe---ccCC-CCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhc
Q 004055 296 LVYDHDIRLGQ---MPVN-CSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESAS 357 (776)
Q Consensus 296 ~~~~~DiR~~~---v~~~-~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~ 357 (776)
++||.++...+ .|++ =+|.=|.-.+.+||| .-+|++.|-|--.+ -..+.|+++|....
T Consensus 8 ~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp-~~~F~~~YiDI~n~---~~e~~~~~~aekI~ 69 (106)
T COG4837 8 VVYGAEVICASCVNAPTSKDTYEWLEAALKRKYP-NQPFKYTYIDITNP---PLEDHDLQFAEKIE 69 (106)
T ss_pred EEecchhhhHHhcCCCcchhHHHHHHHHHhccCC-CCCcEEEEEEcCCC---ccHHHHHHHHHHHh
Confidence 35888888776 3544 478888899999999 78999999992111 23457788887655
No 457
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=3.1e+02 Score=30.97 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALR 74 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALk 74 (776)
+++.|..|...+...-..++|++|+.+|+.|++
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 667777777777777777777777777776665
No 458
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.15 E-value=3.3e+02 Score=33.28 Aligned_cols=84 Identities=10% Similarity=0.059 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004055 65 ALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 65 Ale~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~ 144 (776)
...++++||.+.++. .-.+ .+.+++| +++.|..... +.++..-|-.+|.+....|++..|.++|.
T Consensus 626 ~~g~~e~AL~~s~D~-----d~rF---elal~lg--rl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 626 SQGMKEQALELSTDP-----DQRF---ELALKLG--RLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred hccchHhhhhcCCCh-----hhhh---hhhhhcC--cHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHH
Confidence 344566777776653 2223 3445777 8888766433 33577788999999999999999999999
Q ss_pred HHHhhC--------CCCHHHHHHHHHH
Q 004055 145 VLLGVE--------PNHRDALEIARRL 163 (776)
Q Consensus 145 kAL~Ld--------P~N~~al~~la~l 163 (776)
++-.+. .+|.+.+..++..
T Consensus 691 ~a~d~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 691 RARDLGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hhcchhhhhhhhhhcCChhHHHHHHHH
Confidence 875442 3455544444443
No 459
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=24.14 E-value=2.3e+02 Score=22.59 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=42.7
Q ss_pred EeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCC-----CeeeecChHHHHHHHHhcc
Q 004055 305 GQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDG-----DLVTITCTAELRLAESASD 358 (776)
Q Consensus 305 ~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDG-----DlVTi~s~dDL~~A~~~~~ 358 (776)
--||.+++-.+|++.... |+....+.|... ..| =+|++.+.+|.+.|+...+
T Consensus 4 ~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQ-FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp ESETTTSSHHHHHHHHHT-TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCcCCHHHHHHHHHH-hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcC
Confidence 348999999999999888 887777777775 344 4899999999999998663
No 460
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.06 E-value=4.1e+02 Score=26.66 Aligned_cols=50 Identities=20% Similarity=0.094 Sum_probs=25.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 130 FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+...|+-+.-...++..++-+..++..+.-++.+|.++|...++...+.+
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44555555555555555544455667777777777777776666665543
No 461
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.95 E-value=1.2e+02 Score=27.16 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 101 NYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
.|+.|....++||..+ ..|+.+.|+..|++++.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 4566666666666554 33555666666665554
No 462
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=22.74 E-value=30 Score=32.55 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHhhcCCCCcccchHHHHHHHhHHHHHhhhChHHHHHHHHHHH
Q 004055 451 MDDWLFEFAQLFRTHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQNLFDKAA 505 (776)
Q Consensus 451 id~w~~~fa~lf~~~~g~d~d~~ldl~~~g~~~~~eale~~v~~~~a~~lf~~a~ 505 (776)
||-==+.=|+=-=++.|+.+|.|+.+.++|+++-.. ..++.++.+++++...
T Consensus 57 IDGC~~~Ca~k~le~~g~~~~~~i~~tdlgi~k~~~---~~~~~~~i~~~~~~v~ 108 (110)
T PF08859_consen 57 IDGCPLCCAKKILEEAGVKPDEHIVLTDLGIKKRKG---DDVSEEEIEEVVEAVK 108 (110)
T ss_pred ECCCHHHHHHHHHHHcCCCCceEEEEeecccccCCC---CCCCHHHHHHHHHHHH
Confidence 333334456666678999999999999999987543 7777888888775543
No 463
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.66 E-value=1.7e+02 Score=34.67 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK 98 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG 98 (776)
+...++.+...|.+|+|.=+.+...+++--+|.+ ..+....|.|+-++|
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n----~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGN----KAARELQADALEQLG 500 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCcc----HHHHHHHHhHHHHhh
Confidence 4455666666677777766667666666666665 555666666666666
No 464
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=22.65 E-value=2.1e+02 Score=22.82 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=31.1
Q ss_pred eeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCC-ceEEEEec
Q 004055 294 LKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSK-SVLIKYKD 336 (776)
Q Consensus 294 vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~-~~~iKYkD 336 (776)
|.|...+.+..+.|+.+.+..+|..+|..+++... .+++.|..
T Consensus 3 i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g 46 (64)
T smart00213 3 LTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKG 46 (64)
T ss_pred EEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 33443334666778999999999999999987543 37777753
No 465
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.54 E-value=9.8e+02 Score=33.85 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNAL---RLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KAL---kLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..|..+...--...+..+-+-.+++++ ..+|+.......+|...|.+-...| .++.|....-.|.+.. -+.++
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~r--~~~i~ 1705 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG--HLQRAQNALLNAKESR--LPEIV 1705 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhcc--cchHH
Confidence 344444433222222444455555544 4455555567889999999998888 9999999999998877 68899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
.-+|..+-..|+...|+..+++.+.++
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999765
No 466
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=22.22 E-value=96 Score=27.57 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=28.6
Q ss_pred eeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCC-ceEEEEecCC
Q 004055 294 LKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSK-SVLIKYKDND 338 (776)
Q Consensus 294 vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~-~~~iKYkDeD 338 (776)
|.|+-.+=+.+|.++++.++.+|.++|.+.|+... .+.+ |+|..
T Consensus 7 lRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L-~~~~~ 51 (80)
T PF11543_consen 7 LRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSL-SKDRN 51 (80)
T ss_dssp EEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT----BSSGG
T ss_pred EEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEE-EecCC
Confidence 45555566889999999999999999999998553 3544 56643
No 467
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.09 E-value=2.9e+02 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 004055 62 YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP 117 (776)
Q Consensus 62 yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP 117 (776)
-...++...+.++..|+ +..+.+++.++...| +.++|.+...++..+-|
T Consensus 127 l~~~~~~a~~~l~~~P~-----~~~~~~~a~~l~~~G--~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-----PNVYQRYALALALLG--DPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC
Confidence 34455666667777787 788999999999999 99999999999999999
No 468
>PRK11619 lytic murein transglycosylase; Provisional
Probab=22.06 E-value=1.5e+03 Score=27.78 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHHHHH--HHHHHHHhhhhhhHHhhhhhcCCcccccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccCCchh
Q 004055 500 LFDKAALKFQ--EVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAAQL--QTAYDWVKEKYSLAKEKYEEALLIKPDFY 575 (776)
Q Consensus 500 lf~~a~~kfq--e~aa~a~fnwgnvh~~~ark~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~a~~~ye~a~~ikpdf~ 575 (776)
.+..-.++|. -+-|+|-||=|--.+.+..++-. .......-+|.| ..-.++|+.-.+ ....|..-+.-+|.|+
T Consensus 559 yL~~l~~~~~~~~~la~aaYNaGpg~v~~w~~~~~--~~~~~~~~ie~iP~~ETR~YV~~Vl~-~~~~Y~~~l~~~~~~~ 635 (644)
T PRK11619 559 YLEYVYQQFGNNRILASAAYNAGPGRVRTWLGNSA--GRIDAVAFVESIPFSETRGYVKNVLA-YDAYYRYFMGQKPTLL 635 (644)
T ss_pred HHHHHHHHcCCCHHHHHhHHcCCHHHHHHHHhhcc--CCCcHHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHhCCCCccc
Confidence 3444445563 46788889877444444432210 000011111211 233444444443 2355666666666664
Q ss_pred H
Q 004055 576 E 576 (776)
Q Consensus 576 e 576 (776)
.
T Consensus 636 ~ 636 (644)
T PRK11619 636 S 636 (644)
T ss_pred C
Confidence 3
No 469
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.03 E-value=8.3e+02 Score=27.51 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=91.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCCCH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTP----KTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV-----QPRFV 120 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP----~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel-----dP~n~ 120 (776)
.+.++.+.+.+++++|+..|.+.|..-- ....+.-....+++..|..+| +|..--+.....-+. .|+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g--~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKG--DYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcC--CcchHHHHHHhhHHHHHHhcchhHH
Confidence 5788999999999999999999988622 111234566788999999998 766543333322222 22222
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCC-CCHHHHH-----HHHHHHHHcCChHHHHHHHhh------C--CCCCC
Q 004055 121 RALLRRARAF-DAIGKYEMAMQDVQVLLGVEP-NHRDALE-----IARRLRTALGPRQEAQQDLQS------R--PSPAA 185 (776)
Q Consensus 121 kAl~~rA~ay-~aLGr~deAl~d~~kAL~LdP-~N~~al~-----~la~ll~~lg~~qeA~~~l~k------k--l~P~~ 185 (776)
+....+-.-+ +....++.-+..+..+++..- ++...+. -+..++...|++.+|+..... + -.|.-
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 3222222111 223455555555655555432 2222222 233445566777777765432 1 22444
Q ss_pred HHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 186 LGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 186 ~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
...+..-..+|........++..+..++
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence 5556666777777777666666655554
No 470
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=21.78 E-value=1e+03 Score=25.59 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhC------CCCH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQV-----QPRFVRALLRRARAFDAIGKYE-MAMQDVQVLLGVE------PNHR 154 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALel-----dP~n~kAl~~rA~ay~aLGr~d-eAl~d~~kAL~Ld------P~N~ 154 (776)
++.=|..+++.+ ++..|.+.+...++. .|.+....-++..++.....-+ .-....+++++.. -.++
T Consensus 13 L~~Ga~~ll~~~--Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 13 LYSGALILLKHG--QYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHCC--CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 455666667766 777776666554443 2333444445555554443222 2222333333322 1345
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH
Q 004055 155 DALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 155 ~al~~la~ll~~lg~~qeA~~~l 177 (776)
..+..++..+..-+++.+|..++
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHH
Confidence 55555555555555555555544
No 471
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.63 E-value=1.4e+02 Score=26.39 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=8.9
Q ss_pred HcCCHHHHHHHHHHHHh
Q 004055 132 AIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~ 148 (776)
..|+|++|+..|..++.
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45555555555555443
No 472
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=21.55 E-value=31 Score=41.07 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCC-C
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNAL--RLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTM--ALQVQP-R 118 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KAL--kLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~k--ALeldP-~ 118 (776)
+++.-+..-+..+.+.|++..|...+.+.- .+.|.. ........|.+.+..| ++..|+..+.. ...+.+ .
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q---~~~~~Ll~A~lal~~~--~~~~Al~~L~~~~~~~l~~~~ 96 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ---QARYQLLRARLALAQG--DPEQALSLLNAQDLWQLPPEQ 96 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH---HHHHHHHHHHHHHhcC--CHHHHHHHhccCCcccCCHHH
Confidence 556677788888999999999999998766 344433 4566777788888888 99999998874 111222 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP 169 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~ 169 (776)
....|..+|.+|...|++-.|...+-..-.+-++......+...+...+..
T Consensus 97 ~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~ 147 (536)
T PF04348_consen 97 QARYHQLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQ 147 (536)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHc
Confidence 345667789999999999998888766655554333334444444444433
No 473
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=21.36 E-value=2.2e+02 Score=24.41 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhCCC
Q 004055 139 AMQDVQVLLGVEPN 152 (776)
Q Consensus 139 Al~d~~kAL~LdP~ 152 (776)
|++.|.+++...|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 33444445555654
No 474
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=21.32 E-value=3e+02 Score=24.29 Aligned_cols=29 Identities=3% Similarity=0.110 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 137 EMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 137 deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
..|+..|.+++...|+...-......+..
T Consensus 30 ~~aie~l~~~lk~e~d~~~k~~~r~ki~e 58 (77)
T cd02683 30 QEGIDLLMQVLKGTKDEAKKKNLRQKISE 58 (77)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 34444555566677755433333333333
No 475
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.19 E-value=1.5e+02 Score=26.97 Aligned_cols=38 Identities=32% Similarity=0.580 Sum_probs=30.9
Q ss_pred CCcccchHHHHHHHhHHHHHhhhChHHHHHHHHHHHHHHHHH
Q 004055 470 PDAHIDLHELGMELCSEALEETVTSEEAQNLFDKAALKFQEV 511 (776)
Q Consensus 470 ~d~~ldl~~~g~~~~~eale~~v~~~~a~~lf~~a~~kfqe~ 511 (776)
.|--|-|++ ||+||-+|+... .+||.+++.|.-.|+++
T Consensus 42 ndpeisL~e-SvkLYkeG~~lL---~eAqk~LE~AkLe~~eI 79 (86)
T PRK14065 42 NDPNLSLKD-GMDLYKTAMQEL---FLAQKLLENAYLEYEKL 79 (86)
T ss_pred cCCCCCHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 355566665 899999998764 69999999999999885
No 476
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=21.08 E-value=2.3e+02 Score=20.09 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 106 IAECTMALQVQPRFVRALLRRARAFD 131 (776)
Q Consensus 106 i~~~~kALeldP~n~kAl~~rA~ay~ 131 (776)
+..+..+|..+|++..++..|-.++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 34455555556666555555554443
No 477
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=20.85 E-value=3.2e+02 Score=24.81 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=38.2
Q ss_pred cceeEe-eccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHH
Q 004055 292 RPLKLV-YDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAE 354 (776)
Q Consensus 292 ~~vK~~-~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~ 354 (776)
|++||. +...+|+-++.. |+.+|+.++.++|.....+.|- -++||. +.+++|.=..+
T Consensus 3 rpfkv~~~~r~~kkGV~A~--sL~EL~~K~~~~L~~~~~~~lv-LeeDGT---~Vd~EeyF~tL 60 (81)
T cd06537 3 RPFRVCDHKRTVRKGLTAA--SLQELLAKALETLLLSGVLTLV-LEEDGT---AVDSEDFFELL 60 (81)
T ss_pred CceEEecCCCCeeEeEEcc--CHHHHHHHHHHHhCCCCceEEE-EecCCC---EEccHHHHhhC
Confidence 445554 244566666544 7999999999999987666654 456894 55677765444
No 478
>PF12854 PPR_1: PPR repeat
Probab=20.67 E-value=1.9e+02 Score=21.15 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~ 144 (776)
...|..+-.+|.+.|++++|++.|+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555556666666666666554
No 479
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=20.52 E-value=2.6e+02 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=23.1
Q ss_pred ccceeEEeccCCCCHHHHHHHHHhHCCC
Q 004055 299 DHDIRLGQMPVNCSFKALREIVSKRFPS 326 (776)
Q Consensus 299 ~~DiR~~~v~~~~~~~~L~~~v~~kF~~ 326 (776)
|.+...+.+|.++|..+|++.+...||.
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~ 41 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPG 41 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCch
Confidence 4455566788899999999999999985
No 480
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=20.45 E-value=5.6e+02 Score=22.07 Aligned_cols=61 Identities=7% Similarity=0.091 Sum_probs=41.8
Q ss_pred eeEeeccc-----eeEEeccCCCCHHHHHHHHHhHCCC---CCceEEE-EecCCCCeeeecChHHHHHHH
Q 004055 294 LKLVYDHD-----IRLGQMPVNCSFKALREIVSKRFPS---SKSVLIK-YKDNDGDLVTITCTAELRLAE 354 (776)
Q Consensus 294 vK~~~~~D-----iR~~~v~~~~~~~~L~~~v~~kF~~---~~~~~iK-YkDeDGDlVTi~s~dDL~~A~ 354 (776)
|||..++- .+.|.|+.+.|-.+++..+.+||.. ...|.|- +.-..|--..+.+++-.-...
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~ 74 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQ 74 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHH
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHH
Confidence 56665443 6778899999999999999999997 2347774 444455445555555544444
No 481
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=20.38 E-value=33 Score=26.11 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhcCCCCccc
Q 004055 456 FEFAQLFRTHVGIDPDAHI 474 (776)
Q Consensus 456 ~~fa~lf~~~~g~d~d~~l 474 (776)
-.|.++||+++|+.|-.|+
T Consensus 23 ~~f~r~Fk~~~g~tp~~y~ 41 (42)
T PF00165_consen 23 SYFSRLFKKETGMTPKQYR 41 (42)
T ss_dssp HHHHHHHHHHTSS-HHHHH
T ss_pred HHHHHHHHHHHCcCHHHHh
Confidence 4699999999999875543
No 482
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=20.36 E-value=1e+03 Score=25.10 Aligned_cols=115 Identities=20% Similarity=0.285 Sum_probs=60.0
Q ss_pred HHhHHHHHhhhChHHHHHHHHHHHHHHH-----H-------HHHHHHhhhhhhH--HhhhhhcCCccc-ccch----HHH
Q 004055 482 ELCSEALEETVTSEEAQNLFDKAALKFQ-----E-------VAALAFFNWGNVH--MCAARKRIPLDE-SAGK----EVV 542 (776)
Q Consensus 482 ~~~~eale~~v~~~~a~~lf~~a~~kfq-----e-------~aa~a~fnwgnvh--~~~ark~~~~~~-~~~~----~~~ 542 (776)
+.|..-|+.+-.--.|+-.|-....-|+ + +.+-+|=..|++. ++..|.++.-.. +.-. .-+
T Consensus 23 K~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~ 102 (207)
T cd07602 23 KECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFR 102 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666667778888888888887 2 3344555555543 444444442110 0000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-------cC-Cch-h--HHHHHhHhhHHHHhhhhhhhhh
Q 004055 543 AAQLQTAYDWVKEKYSLAKEKYEEALL-------IK-PDF-Y--EGLLALGQQQFEMAKLHWSYAL 597 (776)
Q Consensus 543 ~~~~~~~~~~~~~~y~~a~~~ye~a~~-------ik-pdf-~--e~~~a~g~q~fe~akl~w~~~~ 597 (776)
-++| ..+..+++.|.++-++|+.|+. -| |.- = +.-|....+.|+++.|...++|
T Consensus 103 k~dl-~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l 167 (207)
T cd07602 103 KEQI-GGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASLEYVFKL 167 (207)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 1233345666666666666653 33 532 2 2344555577888888755544
Done!