Query 004055
Match_columns 776
No_of_seqs 305 out of 2159
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vtx_A MAMA; tetratricopeptide 99.8 7.5E-19 2.6E-23 167.4 20.2 168 45-218 4-173 (184)
2 2pl2_A Hypothetical conserved 99.8 2.1E-18 7.1E-23 171.9 17.9 167 46-219 5-184 (217)
3 4gco_A Protein STI-1; structur 99.8 3.3E-18 1.1E-22 157.7 17.5 115 44-164 11-125 (126)
4 4gyw_A UDP-N-acetylglucosamine 99.8 1E-17 3.5E-22 198.3 23.2 166 44-215 7-174 (723)
5 4i17_A Hypothetical protein; T 99.8 1.1E-17 3.7E-22 165.1 18.4 168 46-219 7-213 (228)
6 2pl2_A Hypothetical conserved 99.8 1.5E-17 5.3E-22 165.5 19.1 161 46-213 39-212 (217)
7 3urz_A Uncharacterized protein 99.7 2.6E-17 9.1E-22 162.8 17.7 169 45-219 3-190 (208)
8 2h6f_A Protein farnesyltransfe 99.7 5.6E-17 1.9E-21 178.0 18.6 170 44-219 95-273 (382)
9 1q1o_A Cell division control p 99.7 5.1E-18 1.7E-22 152.2 6.8 79 291-380 5-97 (98)
10 3rkv_A Putative peptidylprolyl 99.7 4.3E-17 1.5E-21 153.6 12.7 127 40-168 5-146 (162)
11 2ho1_A Type 4 fimbrial biogene 99.7 3.6E-16 1.2E-20 154.8 19.6 169 44-218 35-207 (252)
12 4ga2_A E3 SUMO-protein ligase 99.7 1.9E-17 6.6E-22 156.3 9.3 144 52-201 3-149 (150)
13 3as5_A MAMA; tetratricopeptide 99.7 4.6E-16 1.6E-20 144.3 17.0 169 44-218 6-176 (186)
14 2kkc_A Sequestosome-1; P62, PB 99.7 6E-17 2.1E-21 146.9 10.1 79 290-382 4-101 (102)
15 2q7f_A YRRB protein; TPR, prot 99.7 1.9E-15 6.6E-20 147.7 21.6 168 46-219 57-226 (243)
16 2h6f_A Protein farnesyltransfe 99.7 5.5E-16 1.9E-20 170.1 18.0 167 46-219 131-308 (382)
17 2q7f_A YRRB protein; TPR, prot 99.7 4.1E-16 1.4E-20 152.4 15.2 169 44-218 21-191 (243)
18 3upv_A Heat shock protein STI1 99.7 1.4E-15 4.8E-20 136.8 17.2 118 44-167 2-125 (126)
19 3ieg_A DNAJ homolog subfamily 99.7 2.4E-15 8.2E-20 154.1 21.1 167 46-218 3-186 (359)
20 3uq3_A Heat shock protein STI1 99.7 9.1E-16 3.1E-20 150.6 16.9 164 45-215 4-202 (258)
21 2vq2_A PILW, putative fimbrial 99.7 2.9E-15 9.8E-20 144.0 19.2 168 44-217 6-178 (225)
22 1w3b_A UDP-N-acetylglucosamine 99.7 4.8E-15 1.7E-19 157.1 22.5 164 49-218 206-371 (388)
23 3uq3_A Heat shock protein STI1 99.7 1.3E-15 4.3E-20 149.6 16.5 169 46-216 38-237 (258)
24 2ktr_A Sequestosome-1; autopha 99.7 2.4E-16 8.3E-21 145.7 10.4 80 289-382 18-116 (117)
25 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.3E-15 7.9E-20 150.1 18.3 171 46-219 4-217 (225)
26 3qky_A Outer membrane assembly 99.7 9.8E-16 3.4E-20 154.8 15.3 171 46-219 15-228 (261)
27 1pqs_A Cell division control p 99.6 9.1E-17 3.1E-21 138.8 5.7 70 300-380 1-76 (77)
28 2ho1_A Type 4 fimbrial biogene 99.6 1E-14 3.6E-19 144.2 21.4 168 46-219 71-242 (252)
29 4eqf_A PEX5-related protein; a 99.6 3.4E-15 1.2E-19 156.6 18.9 167 46-218 65-279 (365)
30 1w3b_A UDP-N-acetylglucosamine 99.6 6.4E-15 2.2E-19 156.1 21.0 166 47-218 170-337 (388)
31 4abn_A Tetratricopeptide repea 99.6 8.4E-16 2.9E-20 171.7 14.8 167 46-219 102-291 (474)
32 4eqf_A PEX5-related protein; a 99.6 3.2E-15 1.1E-19 156.8 18.1 167 46-218 99-313 (365)
33 4gcn_A Protein STI-1; structur 99.6 3.8E-15 1.3E-19 136.9 16.3 113 42-161 4-123 (127)
34 2hr2_A Hypothetical protein; a 99.6 5.7E-16 2E-20 151.5 10.9 124 42-167 7-149 (159)
35 3u4t_A TPR repeat-containing p 99.6 3.8E-15 1.3E-19 148.8 17.0 166 46-218 3-174 (272)
36 2y4t_A DNAJ homolog subfamily 99.6 7.2E-15 2.5E-19 157.6 20.4 167 44-216 24-207 (450)
37 4ga2_A E3 SUMO-protein ligase 99.6 4E-15 1.4E-19 140.4 15.3 120 44-169 29-149 (150)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 3E-14 1E-18 141.8 21.9 169 44-219 41-248 (275)
39 3hym_B Cell division cycle pro 99.6 1.1E-14 3.9E-19 148.0 18.6 167 46-218 90-268 (330)
40 2fbn_A 70 kDa peptidylprolyl i 99.6 1.1E-14 3.7E-19 141.6 17.2 142 31-174 23-176 (198)
41 1fch_A Peroxisomal targeting s 99.6 2.6E-14 9E-19 148.7 21.0 167 46-218 64-283 (368)
42 1vd2_A Protein kinase C, IOTA 99.6 2E-15 6.9E-20 133.7 9.8 80 291-381 6-87 (89)
43 3hym_B Cell division cycle pro 99.6 2.1E-14 7.2E-19 146.1 18.9 166 47-218 23-191 (330)
44 2vq2_A PILW, putative fimbrial 99.6 3.5E-14 1.2E-18 136.4 19.3 167 46-218 42-214 (225)
45 3sz7_A HSC70 cochaperone (SGT) 99.6 1.1E-14 3.8E-19 137.3 15.3 114 44-163 9-122 (164)
46 3ieg_A DNAJ homolog subfamily 99.6 3E-14 1E-18 145.9 19.7 167 46-218 37-220 (359)
47 1fch_A Peroxisomal targeting s 99.6 2.8E-14 9.6E-19 148.5 19.5 167 46-218 98-317 (368)
48 1a17_A Serine/threonine protei 99.6 5.9E-14 2E-18 129.3 19.5 133 40-178 7-141 (166)
49 3u4t_A TPR repeat-containing p 99.6 3.3E-14 1.1E-18 141.9 18.6 164 48-214 39-207 (272)
50 4gco_A Protein STI-1; structur 99.6 9.6E-15 3.3E-19 134.4 13.3 120 71-196 4-125 (126)
51 1p5q_A FKBP52, FK506-binding p 99.6 2.3E-14 8E-19 153.1 18.0 139 36-176 137-286 (336)
52 3gyz_A Chaperone protein IPGC; 99.6 4.2E-14 1.5E-18 135.6 17.6 113 32-154 26-138 (151)
53 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.7E-14 5.8E-19 160.8 17.1 141 35-177 257-408 (457)
54 4i17_A Hypothetical protein; T 99.6 2.8E-14 9.6E-19 140.6 16.8 145 47-197 43-225 (228)
55 2lni_A Stress-induced-phosphop 99.6 4.8E-14 1.6E-18 124.8 16.1 120 44-169 14-133 (133)
56 2xcb_A PCRH, regulatory protei 99.6 3.9E-14 1.3E-18 131.2 15.5 126 33-168 9-134 (142)
57 2pzi_A Probable serine/threoni 99.6 1.4E-14 4.8E-19 169.4 15.2 156 57-219 402-567 (681)
58 2pzi_A Probable serine/threoni 99.6 1.4E-14 4.7E-19 169.4 15.1 148 47-201 434-583 (681)
59 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-13 3.9E-18 131.4 18.8 134 46-185 39-174 (184)
60 4abn_A Tetratricopeptide repea 99.6 1.4E-14 4.8E-19 161.8 14.1 159 46-211 137-317 (474)
61 2vyi_A SGTA protein; chaperone 99.6 2E-13 6.8E-18 119.5 18.6 121 44-170 10-130 (131)
62 2gw1_A Mitochondrial precursor 99.6 4.1E-14 1.4E-18 153.4 16.8 166 43-215 3-266 (514)
63 2r5s_A Uncharacterized protein 99.6 2.9E-14 9.8E-19 136.6 13.9 160 47-213 7-171 (176)
64 2c2l_A CHIP, carboxy terminus 99.5 3.3E-14 1.1E-18 147.8 14.9 164 46-215 4-199 (281)
65 3fp2_A TPR repeat-containing p 99.5 9.2E-14 3.1E-18 152.1 18.9 111 35-152 14-124 (537)
66 2vgx_A Chaperone SYCD; alterna 99.5 8.2E-14 2.8E-18 131.5 15.9 117 44-166 19-135 (148)
67 3qou_A Protein YBBN; thioredox 99.5 6.2E-14 2.1E-18 146.0 16.2 162 46-213 117-282 (287)
68 1elw_A TPR1-domain of HOP; HOP 99.5 2.3E-13 7.8E-18 117.3 16.7 116 44-165 2-117 (118)
69 1qqe_A Vesicular transport pro 99.5 9.9E-14 3.4E-18 144.1 17.0 175 42-218 33-231 (292)
70 3fp2_A TPR repeat-containing p 99.5 1.8E-13 6.3E-18 149.7 20.1 169 38-213 235-405 (537)
71 1hh8_A P67PHOX, NCF-2, neutrop 99.5 3.4E-13 1.2E-17 130.5 19.7 135 44-187 4-156 (213)
72 2y4t_A DNAJ homolog subfamily 99.5 2.2E-13 7.4E-18 146.1 20.0 166 48-219 179-362 (450)
73 3cv0_A Peroxisome targeting si 99.5 4.6E-14 1.6E-18 143.3 14.0 166 46-217 21-203 (327)
74 1ihg_A Cyclophilin 40; ppiase 99.5 7.7E-14 2.6E-18 152.0 16.4 133 38-176 215-363 (370)
75 2vsy_A XCC0866; transferase, g 99.5 6.8E-14 2.3E-18 158.2 16.1 153 60-218 3-160 (568)
76 3q49_B STIP1 homology and U bo 99.5 1.3E-13 4.4E-18 124.3 14.7 117 45-167 8-129 (137)
77 2if4_A ATFKBP42; FKBP-like, al 99.5 1.5E-14 5.2E-19 154.8 10.0 140 34-179 167-324 (338)
78 4gyw_A UDP-N-acetylglucosamine 99.5 6.2E-14 2.1E-18 166.0 15.9 138 80-219 5-144 (723)
79 3cv0_A Peroxisome targeting si 99.5 1.1E-13 3.8E-18 140.5 14.6 167 46-218 55-272 (327)
80 3edt_B KLC 2, kinesin light ch 99.5 1.2E-13 4.1E-18 136.7 13.8 169 44-214 41-280 (283)
81 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-13 6.1E-18 136.2 14.6 158 57-217 16-175 (275)
82 2dba_A Smooth muscle cell asso 99.5 8.8E-13 3E-17 119.1 17.6 118 45-165 27-144 (148)
83 3qky_A Outer membrane assembly 99.5 2.5E-13 8.6E-18 137.1 15.4 159 46-207 52-253 (261)
84 2xpi_A Anaphase-promoting comp 99.5 5.6E-13 1.9E-17 148.5 19.4 168 46-219 373-549 (597)
85 2fo7_A Synthetic consensus TPR 99.5 1.2E-12 4.1E-17 114.3 17.0 127 47-179 2-128 (136)
86 2xpi_A Anaphase-promoting comp 99.5 9.3E-13 3.2E-17 146.7 19.9 167 46-218 407-582 (597)
87 2xev_A YBGF; tetratricopeptide 99.5 1.1E-12 3.9E-17 116.8 15.8 120 47-169 3-125 (129)
88 3gyz_A Chaperone protein IPGC; 99.5 4E-14 1.4E-18 135.8 6.8 114 67-186 23-138 (151)
89 2vgx_A Chaperone SYCD; alterna 99.5 1.1E-13 3.7E-18 130.6 9.7 122 66-193 7-130 (148)
90 2gw1_A Mitochondrial precursor 99.5 2E-13 6.7E-18 148.0 12.9 167 47-219 305-482 (514)
91 1na0_A Designed protein CTPR3; 99.5 3.7E-12 1.3E-16 110.5 18.5 118 45-168 8-125 (125)
92 1hxi_A PEX5, peroxisome target 99.5 4.6E-13 1.6E-17 122.1 12.9 102 48-155 19-120 (121)
93 3mkr_A Coatomer subunit epsilo 99.5 1.7E-12 5.8E-17 136.0 18.7 163 46-219 101-268 (291)
94 1elr_A TPR2A-domain of HOP; HO 99.5 1.1E-12 3.8E-17 115.1 14.7 118 44-168 2-126 (131)
95 3as5_A MAMA; tetratricopeptide 99.4 5.6E-12 1.9E-16 116.7 19.8 128 46-179 42-169 (186)
96 1p5q_A FKBP52, FK506-binding p 99.4 5.7E-14 2E-18 150.1 6.4 144 58-207 125-285 (336)
97 2e2e_A Formate-dependent nitri 99.4 6.8E-13 2.3E-17 125.8 12.5 133 53-191 17-154 (177)
98 1qqe_A Vesicular transport pro 99.4 2.4E-12 8.3E-17 133.6 17.2 173 44-218 75-272 (292)
99 2xcb_A PCRH, regulatory protei 99.4 3.5E-13 1.2E-17 124.7 9.4 125 67-197 5-131 (142)
100 1ouv_A Conserved hypothetical 99.4 1E-11 3.4E-16 125.6 20.9 156 46-213 6-177 (273)
101 2vsy_A XCC0866; transferase, g 99.4 2.4E-12 8.2E-17 145.5 17.8 142 46-193 23-169 (568)
102 3nf1_A KLC 1, kinesin light ch 99.4 4.9E-13 1.7E-17 134.8 10.4 169 44-215 67-307 (311)
103 3upv_A Heat shock protein STI1 99.4 3.6E-12 1.2E-16 114.3 14.8 114 83-198 3-124 (126)
104 2ond_A Cleavage stimulation fa 99.4 8.7E-12 3E-16 130.0 19.8 162 48-215 52-232 (308)
105 4a1s_A PINS, partner of inscut 99.4 8.5E-13 2.9E-17 140.0 12.1 169 43-213 45-250 (411)
106 3nf1_A KLC 1, kinesin light ch 99.4 9.3E-13 3.2E-17 132.8 11.7 168 44-213 25-222 (311)
107 4g1t_A Interferon-induced prot 99.4 4.9E-12 1.7E-16 137.0 17.6 171 46-218 51-245 (472)
108 4g1t_A Interferon-induced prot 99.4 2.4E-12 8.2E-17 139.4 15.2 173 46-218 94-279 (472)
109 1wmh_B Partitioning defective- 99.4 8.9E-13 3E-17 115.7 9.3 76 291-381 6-84 (86)
110 1ouv_A Conserved hypothetical 99.4 2.4E-11 8.4E-16 122.8 20.8 160 46-217 38-217 (273)
111 3ulq_A Response regulator aspa 99.4 1.6E-12 5.4E-17 138.5 12.5 163 49-213 106-291 (383)
112 2fo7_A Synthetic consensus TPR 99.4 7.4E-12 2.5E-16 109.2 14.3 131 85-217 2-134 (136)
113 3mkr_A Coatomer subunit epsilo 99.4 1.4E-11 4.8E-16 129.0 18.2 163 46-219 65-233 (291)
114 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 3.2E-13 1.1E-17 150.5 5.8 145 59-209 247-408 (457)
115 3ro2_A PINS homolog, G-protein 99.4 1.9E-12 6.6E-17 130.3 10.7 167 45-213 4-210 (338)
116 1wao_1 Serine/threonine protei 99.4 6.8E-13 2.3E-17 149.1 8.0 129 44-178 4-134 (477)
117 2ond_A Cleavage stimulation fa 99.3 1.7E-11 5.8E-16 127.8 17.5 168 46-219 99-274 (308)
118 3sz7_A HSC70 cochaperone (SGT) 99.3 9.1E-12 3.1E-16 117.3 13.9 114 82-197 9-124 (164)
119 3sf4_A G-protein-signaling mod 99.3 1.7E-12 5.8E-17 135.9 9.7 166 46-213 9-214 (406)
120 2vyi_A SGTA protein; chaperone 99.3 2.1E-11 7.3E-16 106.5 15.1 119 83-203 11-131 (131)
121 3ulq_A Response regulator aspa 99.3 7E-12 2.4E-16 133.6 14.4 168 44-213 182-366 (383)
122 3k9i_A BH0479 protein; putativ 99.3 2E-12 6.8E-17 115.8 8.3 104 58-167 2-108 (117)
123 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.5E-11 1.2E-15 119.8 18.0 133 46-179 41-209 (225)
124 2lni_A Stress-induced-phosphop 99.3 1.7E-11 5.7E-16 108.4 13.8 119 81-201 13-133 (133)
125 1a17_A Serine/threonine protei 99.3 2.2E-11 7.4E-16 112.1 14.8 129 83-213 12-144 (166)
126 2ifu_A Gamma-SNAP; membrane fu 99.3 7.2E-12 2.4E-16 131.0 12.8 172 43-218 33-226 (307)
127 3urz_A Uncharacterized protein 99.3 4.3E-11 1.5E-15 118.1 17.1 129 51-186 59-191 (208)
128 3edt_B KLC 2, kinesin light ch 99.3 2.9E-12 9.8E-17 126.7 8.5 156 57-214 12-197 (283)
129 2kck_A TPR repeat; tetratricop 99.3 1.7E-11 5.8E-16 104.8 12.2 103 46-154 6-111 (112)
130 2fbn_A 70 kDa peptidylprolyl i 99.3 2.4E-12 8.2E-17 125.0 7.4 144 57-206 15-176 (198)
131 2qfc_A PLCR protein; TPR, HTH, 99.3 2.4E-10 8.3E-15 118.0 22.7 167 45-213 74-264 (293)
132 3q15_A PSP28, response regulat 99.3 1.9E-11 6.5E-16 130.4 14.2 168 44-213 180-363 (378)
133 2e2e_A Formate-dependent nitri 99.3 4.7E-11 1.6E-15 113.1 15.3 112 46-163 44-158 (177)
134 3q15_A PSP28, response regulat 99.3 1.7E-11 5.9E-16 130.7 13.5 168 46-215 101-290 (378)
135 1elw_A TPR1-domain of HOP; HOP 99.3 1.7E-10 5.7E-15 99.2 17.3 112 83-196 3-116 (118)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.3 5.9E-11 2E-15 114.7 15.5 131 84-219 6-154 (213)
137 1na0_A Designed protein CTPR3; 99.3 1.4E-10 4.9E-15 100.4 16.1 116 83-200 8-125 (125)
138 3rkv_A Putative peptidylprolyl 99.3 1.5E-11 5.3E-16 115.5 10.7 119 83-203 10-149 (162)
139 1zu2_A Mitochondrial import re 99.3 1E-11 3.6E-16 121.2 9.7 100 58-163 14-134 (158)
140 3q49_B STIP1 homology and U bo 99.3 3.1E-11 1.1E-15 108.5 11.9 95 83-179 8-102 (137)
141 1dce_A Protein (RAB geranylger 99.2 2.4E-10 8.2E-15 131.7 20.9 173 41-219 23-225 (567)
142 4gcn_A Protein STI-1; structur 99.2 5.9E-11 2E-15 108.8 12.0 96 82-179 6-108 (127)
143 3sf4_A G-protein-signaling mod 99.2 1.5E-11 5.1E-16 128.8 8.9 168 45-214 126-335 (406)
144 3u3w_A Transcriptional activat 99.2 5.8E-11 2E-15 122.6 13.3 168 44-213 73-264 (293)
145 1hxi_A PEX5, peroxisome target 99.2 8.5E-11 2.9E-15 107.0 12.5 99 86-186 19-119 (121)
146 4a1s_A PINS, partner of inscut 99.2 1.3E-11 4.3E-16 131.0 7.8 167 45-213 85-290 (411)
147 2l6j_A TPR repeat-containing p 99.2 1E-11 3.5E-16 107.4 5.9 95 45-145 3-103 (111)
148 3ro2_A PINS homolog, G-protein 99.2 2.7E-11 9.1E-16 122.0 9.2 167 45-213 82-290 (338)
149 2xev_A YBGF; tetratricopeptide 99.2 2.9E-10 1E-14 101.0 14.0 113 85-199 3-123 (129)
150 2dba_A Smooth muscle cell asso 99.2 3.9E-10 1.3E-14 101.6 14.7 111 84-196 28-143 (148)
151 2kck_A TPR repeat; tetratricop 99.2 1.2E-10 4.1E-15 99.4 10.5 94 84-179 6-102 (112)
152 3dra_A Protein farnesyltransfe 99.2 8.3E-10 2.8E-14 118.2 19.4 151 64-218 51-218 (306)
153 2r5s_A Uncharacterized protein 99.2 1.8E-10 6.2E-15 110.0 12.6 128 45-179 39-169 (176)
154 1dce_A Protein (RAB geranylger 99.2 1.7E-10 6E-15 132.8 14.7 155 46-204 63-244 (567)
155 3dra_A Protein farnesyltransfe 99.2 4.3E-10 1.5E-14 120.4 16.7 162 46-213 103-285 (306)
156 3ro3_A PINS homolog, G-protein 99.1 3.8E-10 1.3E-14 101.5 13.2 134 44-179 7-154 (164)
157 3rjv_A Putative SEL1 repeat pr 99.1 5.5E-10 1.9E-14 110.8 15.2 162 45-215 17-197 (212)
158 3qou_A Protein YBBN; thioredox 99.1 1.7E-10 5.8E-15 120.0 11.9 133 84-218 117-251 (287)
159 2kat_A Uncharacterized protein 99.1 4.4E-10 1.5E-14 99.5 12.3 99 64-168 3-103 (115)
160 3gw4_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 108.0 12.0 152 56-213 2-174 (203)
161 1elr_A TPR2A-domain of HOP; HO 99.1 4.7E-10 1.6E-14 98.2 11.9 114 83-199 3-125 (131)
162 2hr2_A Hypothetical protein; a 99.1 4.5E-10 1.5E-14 109.8 12.9 94 84-179 11-127 (159)
163 2ooe_A Cleavage stimulation fa 99.1 8.5E-10 2.9E-14 123.4 17.0 166 46-217 272-456 (530)
164 2if4_A ATFKBP42; FKBP-like, al 99.1 1.5E-10 5E-15 123.9 9.0 134 83-218 178-331 (338)
165 2c2l_A CHIP, carboxy terminus 99.1 1.2E-09 4E-14 113.5 14.6 133 83-219 3-168 (281)
166 1ihg_A Cyclophilin 40; ppiase 99.1 4E-10 1.4E-14 122.6 11.6 123 84-208 223-363 (370)
167 1hz4_A MALT regulatory protein 99.1 1.7E-09 5.9E-14 114.0 16.1 170 42-213 10-201 (373)
168 2l6j_A TPR repeat-containing p 99.1 2.2E-10 7.6E-15 98.9 7.7 92 84-177 4-101 (111)
169 1wao_1 Serine/threonine protei 99.1 9.8E-11 3.4E-15 131.5 6.4 127 84-212 6-136 (477)
170 2qfc_A PLCR protein; TPR, HTH, 99.1 5.1E-09 1.7E-13 108.1 18.7 133 45-179 114-262 (293)
171 3dss_A Geranylgeranyl transfer 99.0 2.8E-09 9.6E-14 115.5 17.1 170 44-219 24-226 (331)
172 3u3w_A Transcriptional activat 99.0 2.2E-09 7.7E-14 110.7 15.6 133 45-179 114-262 (293)
173 1na3_A Designed protein CTPR2; 99.0 2.4E-09 8.2E-14 89.2 12.6 84 83-168 8-91 (91)
174 3q7a_A Farnesyltransferase alp 99.0 5.2E-09 1.8E-13 114.1 18.7 163 52-219 60-241 (349)
175 2ifu_A Gamma-SNAP; membrane fu 99.0 1E-09 3.5E-14 114.7 12.3 160 44-207 74-253 (307)
176 3gw4_A Uncharacterized protein 99.0 1.6E-09 5.4E-14 103.1 11.4 133 45-179 25-172 (203)
177 1hz4_A MALT regulatory protein 99.0 7.9E-09 2.7E-13 108.9 17.9 169 44-214 51-243 (373)
178 3k9i_A BH0479 protein; putativ 99.0 4.9E-10 1.7E-14 100.1 7.3 104 101-204 5-113 (117)
179 3dss_A Geranylgeranyl transfer 99.0 4.7E-09 1.6E-13 113.7 16.1 169 46-218 64-270 (331)
180 4f3v_A ESX-1 secretion system 99.0 1.9E-09 6.4E-14 114.4 12.7 171 44-218 5-240 (282)
181 1na3_A Designed protein CTPR2; 99.0 6.6E-09 2.3E-13 86.5 13.3 85 44-134 7-91 (91)
182 3e4b_A ALGK; tetratricopeptide 99.0 1.1E-08 3.6E-13 113.6 18.4 158 48-216 178-352 (452)
183 2bkf_A Zinc-finger protein NBR 99.0 1.8E-09 6E-14 94.6 9.2 79 291-382 6-86 (87)
184 2ooe_A Cleavage stimulation fa 99.0 1E-08 3.5E-13 114.6 18.0 167 46-217 321-494 (530)
185 2xm6_A Protein corresponding t 99.0 2.5E-08 8.6E-13 110.4 20.8 158 45-214 38-215 (490)
186 2kc7_A BFR218_protein; tetratr 99.0 1E-09 3.6E-14 94.0 7.2 90 50-153 4-94 (99)
187 2xm6_A Protein corresponding t 98.9 4.4E-08 1.5E-12 108.4 21.5 157 46-214 75-251 (490)
188 1wj6_A KIAA0049 protein, RSGI 98.9 1.7E-09 5.7E-14 96.9 6.9 80 290-382 13-94 (101)
189 3q7a_A Farnesyltransferase alp 98.9 2.4E-08 8.3E-13 108.9 17.0 153 46-202 88-258 (349)
190 3rjv_A Putative SEL1 repeat pr 98.9 1.5E-08 5.2E-13 100.4 13.5 139 64-215 4-158 (212)
191 3ro3_A PINS homolog, G-protein 98.8 7.6E-09 2.6E-13 92.9 9.1 129 83-213 8-156 (164)
192 3ma5_A Tetratricopeptide repea 98.8 1.4E-08 4.8E-13 88.9 10.5 86 76-167 3-90 (100)
193 1oey_A P67-PHOX, neutrophil cy 98.8 5.1E-09 1.7E-13 91.6 7.2 76 291-382 5-82 (83)
194 1zu2_A Mitochondrial import re 98.7 1.4E-08 4.8E-13 99.2 8.2 95 96-192 14-131 (158)
195 3e4b_A ALGK; tetratricopeptide 98.7 6E-08 2.1E-12 107.6 14.4 156 50-218 217-390 (452)
196 2kc7_A BFR218_protein; tetratr 98.7 6E-08 2E-12 82.9 11.2 69 87-157 3-72 (99)
197 3n71_A Histone lysine methyltr 98.7 5.1E-08 1.7E-12 110.7 13.6 136 41-178 304-459 (490)
198 4f3v_A ESX-1 secretion system 98.7 5.8E-08 2E-12 103.0 11.2 139 46-192 102-247 (282)
199 1oey_J P40-PHOX, neutrophil cy 98.7 6.1E-08 2.1E-12 86.7 8.7 77 299-383 17-97 (107)
200 4b4t_Q 26S proteasome regulato 98.7 1.1E-07 3.7E-12 101.6 12.4 164 48-213 6-202 (434)
201 2kat_A Uncharacterized protein 98.6 2E-07 6.8E-12 82.2 10.4 76 104-179 3-78 (115)
202 3mv2_B Coatomer subunit epsilo 98.6 6E-07 2.1E-11 96.4 15.9 165 48-219 102-286 (310)
203 3ma5_A Tetratricopeptide repea 98.5 5.1E-07 1.7E-11 78.8 10.1 82 46-133 7-90 (100)
204 4b4t_Q 26S proteasome regulato 98.4 1.1E-06 3.9E-11 93.7 13.4 170 42-213 51-243 (434)
205 1klx_A Cysteine rich protein B 98.4 1.8E-06 6.2E-11 80.4 12.7 118 60-191 9-134 (138)
206 3ly7_A Transcriptional activat 98.4 2E-06 6.7E-11 94.5 14.9 138 46-188 196-346 (372)
207 3qww_A SET and MYND domain-con 98.4 1.8E-06 6E-11 96.6 14.6 118 42-161 294-428 (433)
208 2v5f_A Prolyl 4-hydroxylase su 98.4 1.7E-06 5.9E-11 76.9 11.3 80 46-127 5-87 (104)
209 1pc2_A Mitochondria fission pr 98.4 3.2E-06 1.1E-10 82.0 12.7 102 62-167 14-118 (152)
210 1xi4_A Clathrin heavy chain; a 98.4 3.6E-06 1.2E-10 104.9 16.0 143 47-213 1106-1248(1630)
211 3qwp_A SET and MYND domain-con 98.3 2.3E-06 8E-11 95.3 13.2 116 43-160 284-416 (429)
212 1ip9_A BEM1 protein; ubiquitin 98.3 7.9E-07 2.7E-11 77.5 7.2 68 287-356 8-76 (85)
213 3bee_A Putative YFRE protein; 98.3 3.4E-06 1.2E-10 74.4 10.9 73 84-156 6-79 (93)
214 2v5f_A Prolyl 4-hydroxylase su 98.2 9.9E-06 3.4E-10 71.9 11.9 80 84-165 5-91 (104)
215 3mv2_B Coatomer subunit epsilo 98.2 6.4E-06 2.2E-10 88.5 12.5 142 65-213 85-238 (310)
216 1xi4_A Clathrin heavy chain; a 98.2 1.6E-05 5.5E-10 99.2 16.6 151 50-212 1053-1221(1630)
217 1b89_A Protein (clathrin heavy 98.2 4.3E-06 1.5E-10 93.9 10.0 148 48-211 124-307 (449)
218 1klx_A Cysteine rich protein B 98.1 2.6E-05 8.9E-10 72.5 13.2 98 52-161 31-136 (138)
219 2cu1_A Mitogen-activated prote 98.0 4.2E-05 1.4E-09 68.4 10.8 80 290-382 7-86 (103)
220 3n71_A Histone lysine methyltr 98.0 2E-05 6.8E-10 89.5 11.1 103 44-148 349-463 (490)
221 1b89_A Protein (clathrin heavy 97.9 2.1E-05 7.3E-10 88.3 9.9 156 46-219 61-240 (449)
222 2npt_A Dual specificity mitoge 97.9 3.3E-05 1.1E-09 68.0 7.5 67 290-356 15-82 (106)
223 1nzn_A CGI-135 protein, fissio 97.8 0.00012 4.1E-09 68.9 11.6 100 62-167 17-121 (126)
224 3bee_A Putative YFRE protein; 97.8 0.00012 4.2E-09 64.4 10.6 73 116-188 2-79 (93)
225 4e6h_A MRNA 3'-END-processing 97.7 0.00031 1E-08 82.8 15.7 163 49-217 346-535 (679)
226 3ly7_A Transcriptional activat 97.6 0.00027 9.1E-09 77.7 12.3 146 71-219 185-343 (372)
227 3u64_A Protein TP_0956; tetrat 97.6 0.0002 6.7E-09 76.4 9.5 89 62-153 179-273 (301)
228 1pc2_A Mitochondria fission pr 97.5 0.00032 1.1E-08 68.0 9.1 80 46-130 32-115 (152)
229 3u64_A Protein TP_0956; tetrat 97.4 0.00052 1.8E-08 73.2 10.6 77 103-179 180-265 (301)
230 2jrh_A Mitogen-activated prote 97.3 0.0016 5.6E-08 57.0 10.3 80 290-382 3-82 (94)
231 4e6h_A MRNA 3'-END-processing 97.3 0.0029 9.9E-08 74.6 15.6 169 49-219 381-574 (679)
232 3ffl_A Anaphase-promoting comp 97.2 0.0016 5.5E-08 63.9 10.6 67 47-115 21-92 (167)
233 3qwp_A SET and MYND domain-con 97.2 0.00069 2.4E-08 75.4 9.0 87 44-132 327-425 (429)
234 3o48_A Mitochondria fission 1 97.1 0.0019 6.4E-08 61.3 9.7 84 84-167 40-125 (134)
235 3qww_A SET and MYND domain-con 97.1 0.0012 4.1E-08 73.7 10.0 92 100-191 312-426 (433)
236 1y8m_A FIS1; mitochondria, unk 97.1 0.0025 8.5E-08 61.1 10.2 84 84-167 39-124 (144)
237 2c60_A Human mitogen-activated 97.1 0.003 1E-07 56.6 9.9 80 290-382 30-109 (111)
238 2npt_B Mitogen-activated prote 97.1 0.0029 9.9E-08 56.1 9.7 80 290-382 19-98 (100)
239 2uy1_A Cleavage stimulation fa 96.5 0.086 2.9E-06 59.3 18.8 161 47-213 214-411 (493)
240 4g26_A Pentatricopeptide repea 96.4 0.17 6E-06 57.1 20.7 159 49-213 29-202 (501)
241 2uy1_A Cleavage stimulation fa 96.2 0.073 2.5E-06 59.9 15.9 143 62-212 195-380 (493)
242 1nzn_A CGI-135 protein, fissio 95.8 0.03 1E-06 52.5 8.9 80 46-130 35-118 (126)
243 2ff4_A Probable regulatory pro 95.7 0.1 3.4E-06 57.1 14.2 101 44-146 113-231 (388)
244 1y8m_A FIS1; mitochondria, unk 95.6 0.11 3.6E-06 49.9 12.0 80 46-130 39-121 (144)
245 3o48_A Mitochondria fission 1 95.5 0.087 3E-06 49.9 10.8 80 47-131 41-123 (134)
246 3ffl_A Anaphase-promoting comp 95.1 0.14 4.7E-06 50.3 10.9 91 87-179 23-147 (167)
247 4h7y_A Dual specificity protei 94.3 0.29 1E-05 47.5 11.0 110 47-159 14-133 (161)
248 4g26_A Pentatricopeptide repea 92.9 2.6 9E-05 47.4 17.6 122 60-188 84-213 (501)
249 4gns_B Protein CSD3, chitin bi 91.6 0.92 3.1E-05 54.1 12.2 113 62-179 265-396 (754)
250 2ff4_A Probable regulatory pro 90.5 2.7 9.4E-05 45.7 13.9 79 101-179 130-230 (388)
251 4gns_B Protein CSD3, chitin bi 90.5 0.68 2.3E-05 55.2 9.7 61 84-146 337-397 (754)
252 1ya0_A SMG-7 transcript varian 90.0 1.3 4.5E-05 50.2 11.1 76 88-165 156-231 (497)
253 1zbp_A Hypothetical protein VP 89.8 2.8 9.5E-05 44.1 12.4 63 54-122 5-67 (273)
254 3mkq_A Coatomer beta'-subunit; 88.9 3.8 0.00013 47.0 14.1 105 94-211 662-774 (814)
255 3mkq_A Coatomer beta'-subunit; 88.8 4 0.00014 46.8 14.3 111 84-205 681-802 (814)
256 3kae_A CDC27, possible protein 87.9 10 0.00035 37.7 14.1 96 50-156 37-150 (242)
257 1zbp_A Hypothetical protein VP 86.8 1.7 5.7E-05 45.8 8.5 116 99-218 10-132 (273)
258 1ya0_A SMG-7 transcript varian 85.9 3.1 0.00011 47.2 10.8 82 46-133 152-233 (497)
259 3kae_A CDC27, possible protein 84.5 35 0.0012 34.0 16.4 84 50-147 6-89 (242)
260 4b4t_R RPN7, 26S proteasome re 84.2 4.4 0.00015 44.6 10.9 100 49-151 134-239 (429)
261 3txn_A 26S proteasome regulato 82.0 11 0.00036 41.6 12.6 171 40-212 13-207 (394)
262 3txn_A 26S proteasome regulato 81.2 8.5 0.00029 42.4 11.5 96 51-148 104-209 (394)
263 4b4t_S RPN3, 26S proteasome re 79.1 2.4 8.1E-05 48.5 6.4 119 101-219 151-303 (523)
264 4h7y_A Dual specificity protei 77.9 10 0.00036 36.7 9.5 99 74-179 7-119 (161)
265 4b4t_P 26S proteasome regulato 76.2 28 0.00097 38.4 14.0 104 44-149 135-247 (445)
266 4fhn_B Nucleoporin NUP120; pro 73.3 14 0.00047 45.8 11.5 114 55-178 821-962 (1139)
267 2v6y_A AAA family ATPase, P60 72.8 7.2 0.00025 33.6 6.3 37 39-75 3-40 (83)
268 2cpt_A SKD1 protein, vacuolar 68.4 7.6 0.00026 35.7 5.8 35 41-75 13-47 (117)
269 4fhn_B Nucleoporin NUP120; pro 67.4 26 0.00088 43.4 12.1 95 49-145 845-963 (1139)
270 3mkq_B Coatomer subunit alpha; 66.0 34 0.0012 33.6 10.3 45 95-146 16-60 (177)
271 2w2u_A Hypothetical P60 katani 64.1 12 0.00041 32.2 5.9 36 40-75 13-48 (83)
272 2v6x_A Vacuolar protein sortin 58.7 11 0.00039 32.1 4.8 35 41-75 8-42 (85)
273 1qsa_A Protein (soluble lytic 56.3 40 0.0014 39.2 10.3 128 49-179 217-344 (618)
274 4b6w_A Tubulin-specific chaper 55.9 13 0.00043 32.1 4.6 64 307-385 21-85 (86)
275 1wfd_A Hypothetical protein 15 53.3 20 0.0007 31.3 5.6 34 42-75 11-44 (93)
276 2eel_A Cell death activator CI 52.4 31 0.0011 30.5 6.5 55 290-350 8-64 (91)
277 4gq2_M Nucleoporin NUP120; bet 50.3 98 0.0034 37.6 12.9 94 52-155 816-933 (950)
278 4b4t_S RPN3, 26S proteasome re 50.0 20 0.0007 40.9 6.3 84 83-170 230-327 (523)
279 3spa_A Mtrpol, DNA-directed RN 45.4 2E+02 0.0068 35.8 14.1 95 47-149 128-230 (1134)
280 2ijq_A Hypothetical protein; s 44.5 29 0.00099 33.6 5.6 69 46-114 32-103 (161)
281 1qsa_A Protein (soluble lytic 43.7 4.3E+02 0.015 30.5 16.7 145 52-213 258-408 (618)
282 3mkr_B Coatomer subunit alpha; 43.5 3.3E+02 0.011 29.1 14.1 105 48-152 104-230 (320)
283 4a5x_A MITD1, MIT domain-conta 43.3 35 0.0012 29.5 5.4 32 44-75 14-45 (86)
284 2crb_A Nuclear receptor bindin 43.1 50 0.0017 29.3 6.3 34 42-75 11-44 (97)
285 2vkj_A TM1634; membrane protei 43.0 75 0.0025 28.1 7.3 54 42-97 49-103 (106)
286 3lpz_A GET4 (YOR164C homolog); 43.0 3.4E+02 0.012 29.1 15.2 29 43-71 32-60 (336)
287 4b4t_R RPN7, 26S proteasome re 42.3 30 0.001 37.9 6.1 96 118-213 129-235 (429)
288 2wpv_A GET4, UPF0363 protein Y 40.6 3.5E+02 0.012 28.5 17.5 67 46-114 13-81 (312)
289 1tif_A IF3-N, translation init 38.8 28 0.00095 29.9 4.0 43 331-393 15-58 (78)
290 1xg8_A Hypothetical protein SA 38.7 26 0.00089 31.8 3.9 60 296-357 11-74 (111)
291 4b4t_P 26S proteasome regulato 37.8 2.8E+02 0.0094 30.4 13.0 95 83-179 136-243 (445)
292 2wpv_A GET4, UPF0363 protein Y 37.0 4E+02 0.014 28.1 15.8 33 42-74 29-61 (312)
293 1wjn_A Tubulin-folding protein 37.0 40 0.0014 29.1 4.9 39 300-338 22-61 (97)
294 3spa_A Mtrpol, DNA-directed RN 35.8 3.2E+02 0.011 34.0 13.9 93 83-179 126-226 (1134)
295 1ef1_A Moesin; membrane, FERM 35.2 58 0.002 33.4 6.6 51 292-342 2-54 (294)
296 2kj6_A Tubulin folding cofacto 34.6 1.3E+02 0.0046 26.2 7.9 39 304-342 30-69 (97)
297 1om2_A Protein (mitochondrial 34.1 1.3E+02 0.0045 26.6 7.7 43 36-78 10-52 (95)
298 3ax2_A Mitochondrial import re 34.1 73 0.0025 26.9 5.8 32 48-79 19-50 (73)
299 2cwy_A Hypothetical protein TT 34.0 35 0.0012 30.0 3.9 63 50-114 5-67 (94)
300 3mv2_A Coatomer subunit alpha; 33.8 1.6E+02 0.0055 31.6 9.7 106 49-154 117-241 (325)
301 2cfu_A SDSA1; SDS-hydrolase, l 31.6 64 0.0022 37.6 6.8 50 120-169 449-498 (658)
302 2pjh_A Protein NPL4, nuclear p 31.3 36 0.0012 28.7 3.5 42 293-334 6-48 (80)
303 1wy6_A Hypothetical protein ST 30.3 1.8E+02 0.0061 28.1 8.3 125 50-179 11-150 (172)
304 4gq2_M Nucleoporin NUP120; bet 30.1 1.2E+02 0.0043 36.7 9.3 84 49-134 843-950 (950)
305 2cfu_A SDSA1; SDS-hydrolase, l 29.4 1.2E+02 0.0042 35.2 8.8 49 86-136 451-499 (658)
306 3dde_A TENA/THI-4 protein, dom 29.3 84 0.0029 31.3 6.5 57 453-509 145-208 (239)
307 1t0y_A Tubulin folding cofacto 28.4 1.1E+02 0.0037 27.6 6.5 85 292-393 7-95 (122)
308 3fo3_A Eight-heme nitrite redu 27.1 3.8E+02 0.013 30.5 11.8 88 538-630 419-515 (525)
309 2pmr_A Uncharacterized protein 25.9 97 0.0033 27.0 5.3 36 36-71 29-64 (87)
310 3qij_A Protein 4.1; cytoskelet 25.7 71 0.0024 33.2 5.3 60 285-344 11-73 (296)
311 1d4b_A CIDE B, human cell deat 25.5 78 0.0027 29.3 4.8 56 289-350 33-89 (122)
312 2kzr_A Ubiquitin thioesterase 25.1 86 0.0029 26.3 4.8 42 294-335 3-46 (86)
313 2xs1_A Programmed cell death 6 25.1 5.5E+02 0.019 30.0 13.3 49 575-627 247-295 (704)
314 2oo2_A Hypothetical protein AF 24.7 1E+02 0.0035 26.8 5.2 34 39-72 28-61 (86)
315 2i1j_A Moesin; FERM, coiled-co 24.4 95 0.0032 35.7 6.5 55 290-344 3-59 (575)
316 3myv_A SUSD superfamily protei 24.0 1.6E+02 0.0055 32.2 8.1 31 119-149 189-219 (454)
317 2oc5_A Hypothetical protein; D 23.9 3.7E+02 0.013 27.0 9.5 86 479-569 79-185 (244)
318 3rui_B Autophagy-related prote 23.0 59 0.002 29.8 3.5 26 301-326 47-72 (118)
319 1v6e_A Cytoskeleton-associated 22.6 88 0.003 26.8 4.5 51 292-342 8-61 (95)
320 3ax2_A Mitochondrial import re 22.5 2E+02 0.0067 24.3 6.4 39 124-162 21-59 (73)
321 1f2r_I Inhibitor of caspase-ac 22.4 1.6E+02 0.0056 26.3 6.1 51 290-343 17-71 (100)
322 3lew_A SUSD-like carbohydrate 21.6 1.8E+02 0.0063 32.3 8.0 30 120-149 203-232 (495)
323 2cpz_A CUG triplet repeat RNA- 21.5 3.6E+02 0.012 23.0 8.4 51 306-357 32-87 (115)
324 3kez_A Putative sugar binding 20.8 1.9E+02 0.0064 31.8 7.8 31 119-149 195-225 (461)
325 3t5v_B Nuclear mRNA export pro 20.4 1.9E+02 0.0065 32.3 7.7 92 60-153 140-254 (455)
326 1zb1_A BRO1 protein; AIP1, BRO 20.1 8.2E+02 0.028 26.2 15.7 145 476-627 126-292 (392)
327 1ibx_B Chimera of IGG binding 20.0 83 0.0029 30.0 3.9 55 290-350 62-120 (145)
No 1
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=7.5e-19 Score=167.38 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+..|...|+.++.+|+|++|+..|+++|+++|++ +.+++++|.||..+| ++++|+..+.+++..+|.+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIG--LPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCchhHHHHH
Confidence 46789999999999999999999999999999998 899999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCc
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPC 202 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ 202 (776)
.+|.++...++++.|...+.+++.++|++..++..++.++..+|++++|+..+.+ ...|.++.++..+|.++..+|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999987 67899999999999999999999
Q ss_pred cchhHHhhhhcCCCCC
Q 004055 203 LPARPVGKKAGAPAGG 218 (776)
Q Consensus 203 eeArk~~KKa~~s~P~ 218 (776)
++|..+++++....|.
T Consensus 158 ~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999998866554
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=2.1e-18 Score=171.85 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|+|++|+..|+++|+++|.+ +.+++++|.++..+| ++++|+..+.+++.++|+++.+++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLG--LVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4578899999999999999999999999999998 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHH
Q 004055 126 RARAFDAI-----------GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVR 192 (776)
Q Consensus 126 rA~ay~aL-----------Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~l 192 (776)
+|.++..+ |++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+ .+. .++.++..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999987 456 889999999
Q ss_pred HHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 193 GAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 193 A~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
|.++..+|++++|...++++....|..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999988766664
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=3.3e-18 Score=157.72 Aligned_cols=115 Identities=28% Similarity=0.567 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.|+.++++|+.+|+.|+|++|+..|+++|+++|.+ +.+|+++|.||+.+| ++++|+..|.++|+++|+++.+|
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLM--EFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhc--cHHHHHHHHHHHHHhhhhhhHHH
Confidence 678999999999999999999999999999999998 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
+.+|.+|..+|++++|+.+|+++++++|+|..++..++.|+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988774
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=1e-17 Score=198.29 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.++.+...|+.+.+.|+|++|+..|++||+++|++ +.+|+|+|.+|..+| +|++|+..|++||+++|++..+|
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g--~~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQG--KLQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHH
Confidence 568999999999999999999999999999999998 999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+.+|.+|..+|++++|+..|+++++++|++..++.+++.++..+|++++|+..|.+ +++|+++.++..+|.++..+|+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999988 6889999999999999999999
Q ss_pred ccchhHHhhhhcCC
Q 004055 202 CLPARPVGKKAGAP 215 (776)
Q Consensus 202 ~eeArk~~KKa~~s 215 (776)
+++|...++++...
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 5
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=1.1e-17 Score=165.09 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTP-KTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP-~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
+..++..|..++..|+|++|+..|++++.+.| .+ ..+++++|.|+..+| +|++|+..|.+++.++|.+..+++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIK--KYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCcchHHHHH
Confidence 36899999999999999999999999999998 65 788899999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHhh--CCCCC--CHHHHHHHH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHR-------DALEIARRLRTALGPRQEAQQDLQS--RPSPA--ALGASAVRG 193 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~-------~al~~la~ll~~lg~~qeA~~~l~k--kl~P~--~~~a~~~lA 193 (776)
.+|.+|..+|++++|+..|++++.++|+++ .++..++.++..+|++++|+..+.+ ...|. ++.++..+|
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 6699999999999999999999988 67899 889999999
Q ss_pred HHHHhCCCc---------------------------cchhHHhhhhcCCCCCC
Q 004055 194 APIAGLGPC---------------------------LPARPVGKKAGAPAGGL 219 (776)
Q Consensus 194 ~~l~~LG~~---------------------------eeArk~~KKa~~s~P~~ 219 (776)
.++..+|+. .+|..+++++....|..
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999988 88999999988777664
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.5e-17 Score=165.54 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc-----------CCCCHHHHHHHHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM-----------KPINYETVIAECTMALQ 114 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L-----------G~gdyeeAi~~~~kALe 114 (776)
+..+...|..++..|++++|+..|++++.++|++ +.+++++|.+|..+ | ++++|+..++++++
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRY----LGGYMVLSEAYVALYRQAEDRERGKG--YLEQALSVLKDAER 112 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHTCSSHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhhhhhhccccc--CHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998 89999999999999 9 99999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHH
Q 004055 115 VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVR 192 (776)
Q Consensus 115 ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~l 192 (776)
++|+++.+++.+|.+|..+|++++|+..|+++++++ +++.++..++.++..+|++++|+..+.+ ...|.++.++..+
T Consensus 113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999987 6789999999999
Q ss_pred HHHHHhCCCccchhHHhhhhc
Q 004055 193 GAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 193 A~~l~~LG~~eeArk~~KKa~ 213 (776)
|.++..+|++++|...++++.
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTC---------------
T ss_pred HHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999988864
No 7
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.75 E-value=2.6e-17 Score=162.78 Aligned_cols=169 Identities=15% Similarity=0.054 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHH----------------HHHHHHHcCCCCHHHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSN----------------RAACLMQMKPINYETVIAE 108 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n----------------~A~cy~~LG~gdyeeAi~~ 108 (776)
.++.+...|..++..|+|++|+..|++++.++|++ +.++++ +|.||..+| +|++|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNR--NYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 36788999999999999999999999999999987 788888 999999999 99999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHhhCCCCCCH
Q 004055 109 CTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPR--QEAQQDLQSRPSPAAL 186 (776)
Q Consensus 109 ~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~--qeA~~~l~kkl~P~~~ 186 (776)
|.++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.++..++.++...+.. ..+...+.+...|...
T Consensus 77 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (208)
T 3urz_A 77 YKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch
Confidence 99999999999999999999999999999999999999999999999999999998877653 3445555554444333
Q ss_pred -HHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 187 -GASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 187 -~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
.+++.+|.++..+|++++|..+++++....|..
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 356778999999999999999999999877763
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=5.6e-17 Score=178.03 Aligned_cols=170 Identities=10% Similarity=-0.012 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCCCHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPIN-YETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gd-yeeAi~~~~kALeldP~n~kA 122 (776)
+.+..+...|..++..|+|++|+..|+++|.++|.+ ..+|+++|.++..+| + |++|+..|++||.++|++..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~----~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHHCCCCHHH
Confidence 567889999999999999999999999999999998 999999999999999 8 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHh-C
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAG-L 199 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~-L 199 (776)
|+.+|.+|..+|++++|+.+|+++|.++|+|..++..++.++..+|++++|+..+.+ .++|.+..++..+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999988 6789999999999999999 5
Q ss_pred CCccch-----hHHhhhhcCCCCCC
Q 004055 200 GPCLPA-----RPVGKKAGAPAGGL 219 (776)
Q Consensus 200 G~~eeA-----rk~~KKa~~s~P~~ 219 (776)
|.+++| ..+++++....|..
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~ 273 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHN 273 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCC
Confidence 555888 47788887666653
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=99.72 E-value=5.1e-18 Score=152.23 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=71.3
Q ss_pred ccceeEeec--------cceeEEeccCCCCHHHHHHHHHhHCCCC------CceEEEEecCCCCeeeecChHHHHHHHHh
Q 004055 291 WRPLKLVYD--------HDIRLGQMPVNCSFKALREIVSKRFPSS------KSVLIKYKDNDGDLVTITCTAELRLAESA 356 (776)
Q Consensus 291 ~~~vK~~~~--------~DiR~~~v~~~~~~~~L~~~v~~kF~~~------~~~~iKYkDeDGDlVTi~s~dDL~~A~~~ 356 (776)
..+|||||+ +|+|.+.||++|+|.+|.++|++||+.+ +.++|||||||||||||.|++||+||+++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 378999999 7899999999999999999999999854 66999999999999999999999999998
Q ss_pred cccccccCcccccCCCCCcEEEEE
Q 004055 357 SDSLMTKEPEADKSDSVGMLRLHI 380 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~g~~rL~v 380 (776)
+ ++. ..|+|+|||
T Consensus 85 ~-----~e~------~~~~l~Iwv 97 (98)
T 1q1o_A 85 L-----AEN------NEKFLNIRL 97 (98)
T ss_dssp H-----HHT------TCCEEEEEE
T ss_pred H-----Hhh------hcCeEEEEE
Confidence 7 222 389999998
No 10
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.71 E-value=4.3e-17 Score=153.62 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC------CCChHHHHHHHHHHHHHcCCCCHHHH
Q 004055 40 SIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL--------TPKT------HPDRAVFHSNRAACLMQMKPINYETV 105 (776)
Q Consensus 40 ~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL--------dP~~------~~d~A~ay~n~A~cy~~LG~gdyeeA 105 (776)
.+.++.+..++..|+.+|..|+|++|+..|.++|.+ .|.. .+..+.+|+|+|.||+.+| +|++|
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--~~~~A 82 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG--DLHEA 82 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT--CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHH
Confidence 345688999999999999999999999999999999 2221 1234789999999999999 99999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcC
Q 004055 106 IAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR-DALEIARRLRTALG 168 (776)
Q Consensus 106 i~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~-~al~~la~ll~~lg 168 (776)
+..|.+||.++|.++.+|+++|.+|..+|++++|+.+|++++.++|+|+ .+...+..+...++
T Consensus 83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 77778887776653
No 11
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=3.6e-16 Score=154.83 Aligned_cols=169 Identities=16% Similarity=0.094 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|.+++.+.|.. +.+++++|.+|..+| ++++|+..+.+++..+|.+..++
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEM--EPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCcHHHH
Confidence 458899999999999999999999999999999987 889999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLG--VEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~--LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
+.+|.+|...|++++|+..|++++. .+|.+..++..++.++...|++++|...+.+ ...|.+..++..++.++..+
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999 8899999999999999999999999999977 56788999999999999999
Q ss_pred CCccchhHHhhhhcCCCCC
Q 004055 200 GPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 200 G~~eeArk~~KKa~~s~P~ 218 (776)
|++++|..+++++....|.
T Consensus 189 g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 9999999999998866654
No 12
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=1.9e-17 Score=156.28 Aligned_cols=144 Identities=11% Similarity=0.059 Sum_probs=129.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFD 131 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~ 131 (776)
.|..+..+|++++|+..|++++..+|.+ +..++++|.||+.+| +|++|+..|.++|+++|+++.+|+.+|.+|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~----~~~~~~la~~y~~~~--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQK----SIKGFYFAKLYYEAK--EYDLAKKYICTYINVQERDPKAHRFLGLLYE 76 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHH----HTTHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCccc----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4777888899999999999999998876 778999999999999 9999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH-Hhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 132 AIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQD-LQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~-l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
.+|++++|+..|+++++++|+++.++..++.++..+|++.++... +.+ ++.|.++.++.+++.++...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999998876665 454 6789999999999999888775
No 13
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=4.6e-16 Score=144.31 Aligned_cols=169 Identities=14% Similarity=0.069 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|++++...|.+ ..+++.+|.++...| ++++|+..+.+++..+|.+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 79 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTG--AVDRGTELLERSLADAPDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHH
Confidence 457789999999999999999999999999999987 889999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+.+|.++...|++++|+..|++++.++|.+..++..++.++...|++++|...+.+ ...|.++..+..+|.++..+|+
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999977 5678899999999999999999
Q ss_pred ccchhHHhhhhcCCCCC
Q 004055 202 CLPARPVGKKAGAPAGG 218 (776)
Q Consensus 202 ~eeArk~~KKa~~s~P~ 218 (776)
+++|..+++++....|.
T Consensus 160 ~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 160 HEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998755444
No 14
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.69 E-value=6e-17 Score=146.92 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=70.7
Q ss_pred cccceeEee------ccceeEEeccCC-----------CCHHHHHHHHHhHCCCCCc--eEEEEecCCCCeeeecChHHH
Q 004055 290 RWRPLKLVY------DHDIRLGQMPVN-----------CSFKALREIVSKRFPSSKS--VLIKYKDNDGDLVTITCTAEL 350 (776)
Q Consensus 290 ~~~~vK~~~------~~DiR~~~v~~~-----------~~~~~L~~~v~~kF~~~~~--~~iKYkDeDGDlVTi~s~dDL 350 (776)
++.+||+.+ +.|||+|.++.+ .+|.+|+++|++.||..++ |+|+|+|+|||||||+|++||
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL 83 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEEL 83 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHH
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHH
Confidence 456899998 689999999642 4899999999999997765 999999999999999999999
Q ss_pred HHHHHhcccccccCcccccCCCCCcEEEEEEe
Q 004055 351 RLAESASDSLMTKEPEADKSDSVGMLRLHIVD 382 (776)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~g~~rL~v~e 382 (776)
.+|++++ ..+.+||||+|
T Consensus 84 ~~Al~~~--------------~~~~lRlyVke 101 (102)
T 2kkc_A 84 TMAMSYV--------------KDDIFRIYIKE 101 (102)
T ss_dssp HHHHHHC--------------CSSEEEEEEEE
T ss_pred HHHHHhc--------------CCCeEEEEEEc
Confidence 9999988 47899999997
No 15
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=1.9e-15 Score=147.66 Aligned_cols=168 Identities=16% Similarity=0.023 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|++++|+..|.+++.+.|.. ..++.++|.+|..+| ++++|+..+.+++..+|.+..+++.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~ 130 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKE--MYKEAKDMFEKALRAGMENGDLFYM 130 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5678888999999999999999999999999886 888999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
+|.++..+|++++|+..|++++.++|++..++..++.++...|++++|+..+.+ ...|.++..+..+|.++..+|+++
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 999999999999999999999999999999999999999999999999998876 567888999999999999999999
Q ss_pred chhHHhhhhcCCCCCC
Q 004055 204 PARPVGKKAGAPAGGL 219 (776)
Q Consensus 204 eArk~~KKa~~s~P~~ 219 (776)
+|..+++++....|..
T Consensus 211 ~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccCcch
Confidence 9999999987666653
No 16
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=5.5e-16 Score=170.14 Aligned_cols=167 Identities=10% Similarity=-0.008 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 46 AHELKEEGNKRFQNKD-YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 46 A~~LkeeGn~lfqkGd-yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
+..+...|..+...|+ |++|+..|+++|.++|++ +.+|+++|.+|..+| +|++|+..|++||.++|++..+|+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g~~~~~~g--~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLR--DPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCccCHHHHH
Confidence 5568899999999996 999999999999999998 999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCChHHHH-----HHHhh--CCCCCCHHHHHHHHHHH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA-LGPRQEAQ-----QDLQS--RPSPAALGASAVRGAPI 196 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~-lg~~qeA~-----~~l~k--kl~P~~~~a~~~lA~~l 196 (776)
.+|.++..+|++++|+.+|+++|+++|+|..++..++.++.. .+..++|+ ..+.+ .+.|.+..++..++.++
T Consensus 205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 45547773 56655 57899999999999999
Q ss_pred HhCC--CccchhHHhhhhcCCCCCC
Q 004055 197 AGLG--PCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 197 ~~LG--~~eeArk~~KKa~~s~P~~ 219 (776)
..+| ++.+|.....+. ...|..
T Consensus 285 ~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 285 QDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp TTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred HccCccchHHHHHHHHHh-ccCCCC
Confidence 9988 689999888886 445543
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=4.1e-16 Score=152.42 Aligned_cols=169 Identities=17% Similarity=0.068 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
-.+..+...|..++..|+|++|+..|.+++...|.+ +.+++++|.||..+| ++++|+..+.+++..+|.+..++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVN--ELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcchHHH
Confidence 347789999999999999999999999999999987 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+.+|.++..+|++++|+..|++++.++|.+..++..++.++...|++++|+..+.+ ...|.+...+..+|.++...|+
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999987 5678899999999999999999
Q ss_pred ccchhHHhhhhcCCCCC
Q 004055 202 CLPARPVGKKAGAPAGG 218 (776)
Q Consensus 202 ~eeArk~~KKa~~s~P~ 218 (776)
+++|..+++++....|.
T Consensus 175 ~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPG 191 (243)
T ss_dssp CHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999998765554
No 18
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.4e-15 Score=136.77 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..++..|+.++..|+|++|+..|+++|.++|.+ +.+|+++|.||+.+| +|++|+..|.+++.++|+++.++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLM--SFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCcHHHH
Confidence 357899999999999999999999999999999997 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHc
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVE------PNHRDALEIARRLRTAL 167 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~Ld------P~N~~al~~la~ll~~l 167 (776)
+.+|.+|..+|++++|+..|++++.++ |++..++..+..+...+
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999 99999999999887654
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.67 E-value=2.4e-15 Score=154.12 Aligned_cols=167 Identities=18% Similarity=0.134 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
++.+...|..++..|+|++|+..|.+++..+|.+ +.+++++|.|++.+| ++++|+..|.+++.++|.+..+++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMG--KSKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcchHHHH
Confidence 6789999999999999999999999999999997 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEP---NHRDALEIA------------RRLRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP---~N~~al~~l------------a~ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
+|.++...|++++|+..|++++.++| ++..++..+ +.++...|++++|+..+.+ ...|.++.+
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999999999999999 999888877 6888999999999999987 567999999
Q ss_pred HHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 189 SAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 189 ~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
+..+|.++..+|++++|...+.++....|.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 186 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSD 186 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998765554
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.1e-16 Score=150.59 Aligned_cols=164 Identities=23% Similarity=0.289 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC-----
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF----- 119 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n----- 119 (776)
.++.++..|..++..|+|++|+..|.+++.+. .+ +.+++++|.||..+| +|++|+..+.+++.++|.+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccchH
Confidence 45666666666666666666666666666666 33 455566666666665 6666666666666655544
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHcCChH
Q 004055 120 --VRALLRRARAFDAIGKYEMAMQDVQVLLG--------------------------VEPNHRDALEIARRLRTALGPRQ 171 (776)
Q Consensus 120 --~kAl~~rA~ay~aLGr~deAl~d~~kAL~--------------------------LdP~N~~al~~la~ll~~lg~~q 171 (776)
+.+++.+|.+|..+|++++|+..|++++. ++|.+..++..++.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 45566666666666666666666666655 44445555555555555666666
Q ss_pred HHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCC
Q 004055 172 EAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 172 eA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s 215 (776)
+|+..+.+ ...|.++..+..+|.++..+|++++|..++.++...
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66555554 344555555555566666666666666555555433
No 21
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=2.9e-15 Score=143.96 Aligned_cols=168 Identities=15% Similarity=0.022 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|++++|+..|.+++.+.|.+ +.+++.+|.+|..+| ++++|+..+.+++..+|.+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 79 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLK--VNDKAQESFRQALSIKPDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHHH
Confidence 457789999999999999999999999999999987 889999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHh
Q 004055 124 LRRARAFDAI-GKYEMAMQDVQVLLG--VEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAG 198 (776)
Q Consensus 124 ~~rA~ay~aL-Gr~deAl~d~~kAL~--LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~ 198 (776)
+.+|.++... |++++|+..|++++. .+|.+..++..++.++...|++++|+..+.+ ...|.+..++..+|.++..
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999999999 999999999999999 7777789999999999999999999999877 5678899999999999999
Q ss_pred CCCccchhHHhhhhcCCCC
Q 004055 199 LGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 199 LG~~eeArk~~KKa~~s~P 217 (776)
+|++++|..+++++....|
T Consensus 160 ~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 9999999999999875555
No 22
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.66 E-value=4.8e-15 Score=157.07 Aligned_cols=164 Identities=23% Similarity=0.200 Sum_probs=102.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
+...|..+...|+|++|+..|.+++.++|.+ +.++.++|.+|..+| ++++|+..+.+++.++|.++.+++.+|.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNH----AVVHGNLACVYYEQG--LIDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4444555555555555555555555555544 556666666666666 6666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
+|...|++++|+..|++++.++|+++.++..++.++...|++++|+..+.+ ...|.+..++..+|.++..+|++++|.
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666666666666666666666666666666666666655 345666666666666666666666666
Q ss_pred HHhhhhcCCCCC
Q 004055 207 PVGKKAGAPAGG 218 (776)
Q Consensus 207 k~~KKa~~s~P~ 218 (776)
..++++....|.
T Consensus 360 ~~~~~a~~~~p~ 371 (388)
T 1w3b_A 360 MHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHTTCTT
T ss_pred HHHHHHHhhCCC
Confidence 666666554443
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-15 Score=149.57 Aligned_cols=169 Identities=11% Similarity=0.118 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDR---AVFHSNRAACLMQMKPINYETVIAECTMALQ-------- 114 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~---A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-------- 114 (776)
+..+...|..++..|+|++|+..|.+++.+.|...++. +.+++++|.+|..+| ++++|+..+.+++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--DLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCchhHHH
Confidence 45788999999999999999999999999998764333 689999999999999 99999999999999
Q ss_pred ------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004055 115 ------------------VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQD 176 (776)
Q Consensus 115 ------------------ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~ 176 (776)
.+|.+..+++.+|.++...|++++|+..|++++.++|.++.++..++.++..+|++++|+..
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 67778899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCC
Q 004055 177 LQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPA 216 (776)
Q Consensus 177 l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~ 216 (776)
+.+ ...|.++.++..+|.++..+|++++|..+++++....
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 987 5679999999999999999999999999999987554
No 24
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.66 E-value=2.4e-16 Score=145.71 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=70.7
Q ss_pred ccccceeEeec------cceeEEeccCC-----------CCHHHHHHHHHhHCCCCCc--eEEEEecCCCCeeeecChHH
Q 004055 289 VRWRPLKLVYD------HDIRLGQMPVN-----------CSFKALREIVSKRFPSSKS--VLIKYKDNDGDLVTITCTAE 349 (776)
Q Consensus 289 ~~~~~vK~~~~------~DiR~~~v~~~-----------~~~~~L~~~v~~kF~~~~~--~~iKYkDeDGDlVTi~s~dD 349 (776)
..+.+||+.+. .|||+|.++.+ .+|.+|+++|++.||..++ |+|+|+|+|||||||+|++|
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeE 97 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEE 97 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHH
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHH
Confidence 35679999995 89999999743 4999999999999997665 99999999999999999999
Q ss_pred HHHHHHhcccccccCcccccCCCCCcEEEEEEe
Q 004055 350 LRLAESASDSLMTKEPEADKSDSVGMLRLHIVD 382 (776)
Q Consensus 350 L~~A~~~~~~~~~~~~~~~~~~~~g~~rL~v~e 382 (776)
|++|++++ ..+.+||||++
T Consensus 98 L~~Al~~~--------------~~~~lRlyVke 116 (117)
T 2ktr_A 98 LTMAMSYV--------------KDDIFRIYIKE 116 (117)
T ss_dssp HHHHHHHC--------------CSSEEEEEEEE
T ss_pred HHHHHHhc--------------CCCeEEEEEEe
Confidence 99999988 46799999996
No 25
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.66 E-value=2.3e-15 Score=150.10 Aligned_cols=171 Identities=14% Similarity=0.110 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH---H
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR---A 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k---A 122 (776)
+..++..|..++..|+|++|+..|++++...|.+ +....+++++|.||+.+| +|++|+..|+++++.+|++.. +
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 5678999999999999999999999999999975 234578999999999999 999999999999999999865 8
Q ss_pred HHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHc
Q 004055 123 LLRRARAFDA------------------IGKYEMAMQDVQVLLGVEPNHRDAL-----------------EIARRLRTAL 167 (776)
Q Consensus 123 l~~rA~ay~a------------------LGr~deAl~d~~kAL~LdP~N~~al-----------------~~la~ll~~l 167 (776)
++.+|.++.. .|++++|+..|++++..+|+++.+. ..++.++...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999987 5799999999999999999997654 4567788899
Q ss_pred CChHHHHHHHhh--CCCCCCH---HHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 168 GPRQEAQQDLQS--RPSPAAL---GASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 168 g~~qeA~~~l~k--kl~P~~~---~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
|++.+|+..+.+ ...|.++ .++..+|.++..+|++++|...+++.....|.+
T Consensus 161 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999987 4556665 678999999999999999999999877666664
No 26
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.65 E-value=9.8e-16 Score=154.75 Aligned_cols=171 Identities=16% Similarity=0.040 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kA 122 (776)
+..++..|..++..|+|++|+..|++++...|.+ +..+.+++++|.||+.+| +|++|+..|.+++.++|++ ..+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNK--EYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHCCCCchhHHH
Confidence 6789999999999999999999999999999975 345789999999999999 9999999999999998854 679
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHH
Q 004055 123 LLRRARAFDA--------IGKYEMAMQDVQVLLGVEPNHRDAL-----------------EIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 123 l~~rA~ay~a--------LGr~deAl~d~~kAL~LdP~N~~al-----------------~~la~ll~~lg~~qeA~~~l 177 (776)
++.+|.+++. +|++++|+..|++++.++|+++.+. ..++.++...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999 9999999999999999999997666 77899999999999999999
Q ss_pred hh--CCCCC---CHHHHHHHHHHHHhC----------CCccchhHHhhhhcCCCCCC
Q 004055 178 QS--RPSPA---ALGASAVRGAPIAGL----------GPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 178 ~k--kl~P~---~~~a~~~lA~~l~~L----------G~~eeArk~~KKa~~s~P~~ 219 (776)
.+ ...|. .+.+++.+|.++..+ |++++|...+++.....|.+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 77 34455 567899999999988 88899999999988666664
No 27
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=99.65 E-value=9.1e-17 Score=138.82 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=63.5
Q ss_pred cceeEEeccCCCCHHHHHHHHHhHCCCC------CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCCCC
Q 004055 300 HDIRLGQMPVNCSFKALREIVSKRFPSS------KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSDSV 373 (776)
Q Consensus 300 ~DiR~~~v~~~~~~~~L~~~v~~kF~~~------~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~~~ 373 (776)
.|+|++.||++|+|.+|.++|++||+.. +.++|||||||||+|||.|++||+||++++ ++. ..
T Consensus 1 ~D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~-----~~~------~~ 69 (77)
T 1pqs_A 1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML-----AEN------NE 69 (77)
T ss_dssp CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH-----HHH------CC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH-----Hhh------hc
Confidence 4899999999999999999999999954 779999999999999999999999999987 222 38
Q ss_pred CcEEEEE
Q 004055 374 GMLRLHI 380 (776)
Q Consensus 374 g~~rL~v 380 (776)
|+|+|||
T Consensus 70 ~~leiWv 76 (77)
T 1pqs_A 70 KFLNIRL 76 (77)
T ss_dssp CEEEEEC
T ss_pred CeEEEEE
Confidence 9999997
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1e-14 Score=144.24 Aligned_cols=168 Identities=15% Similarity=-0.017 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCCCCHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ--VQPRFVRAL 123 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe--ldP~n~kAl 123 (776)
+..+...|..++..|+|++|+..|.+++.+.|.+ ..+++++|.+|..+| ++++|+..+.+++. .+|.+..++
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~ 144 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQK--RYEEAYQRLLEASQDTLYPERSRVF 144 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHh--HHHHHHHHHHHHHhCccCcccHHHH
Confidence 4457788999999999999999999999999987 889999999999999 99999999999999 889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+.+|.+|...|++++|+..|++++.++|.+..++..++.++..+|++++|...+.+ ...|.....+..++.++..+|+
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 145 ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED 224 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999987 6778999999999999999999
Q ss_pred ccchhHHhhhhcCCCCCC
Q 004055 202 CLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 202 ~eeArk~~KKa~~s~P~~ 219 (776)
+++|..++++.....|.+
T Consensus 225 ~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 225 RDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 999999999987655553
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=3.4e-15 Score=156.56 Aligned_cols=167 Identities=18% Similarity=0.117 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|+|++|+..|++++.++|.+ +.+++++|.+|..+| +|++|+..|.+++.++|++..+++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~ 138 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENE--NEQAAIVALQRCLELQPNNLKALMA 138 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3457778888888888888888888888888876 778888888888888 8888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC----------------------------------------------CHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPN----------------------------------------------HRDALEI 159 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~----------------------------------------------N~~al~~ 159 (776)
+|.+|..+|++++|+..|++++.++|+ ++.++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 888888888888777777777666553 6777777
Q ss_pred HHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 160 ARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 160 la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
++.++...|++++|+..+.+ ...|.++.++..+|.++..+|++++|..+++++....|.
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 78888888888888887766 456777778888888888888888888888877655554
No 30
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=6.4e-15 Score=156.13 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
..+...|..+...|++++|+..|++++.++|.+ ..+++++|.++..+| ++++|+..+.+++.++|++..+++.+
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l 243 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----LDAYINLGNVLKEAR--IFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTT--CTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence 456667777777777777777777777777775 677777777777777 77788887777878888777888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccc
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLP 204 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~ee 204 (776)
|.+|...|++++|+..|++++.++|+++.++..++.++...|++++|+..+.+ ...|.++..+..++.++..+|++++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888888888888888888888888888888888777766 4567777777778888888888888
Q ss_pred hhHHhhhhcCCCCC
Q 004055 205 ARPVGKKAGAPAGG 218 (776)
Q Consensus 205 Ark~~KKa~~s~P~ 218 (776)
|...++++....|.
T Consensus 324 A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 324 AVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHTTSCTT
T ss_pred HHHHHHHHHhcCCC
Confidence 88888877765554
No 31
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=8.4e-16 Score=171.75 Aligned_cols=167 Identities=12% Similarity=0.003 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 46 AHELKEEGNKRFQNKDY-VGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdy-eeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
+..+...|..++..|+| ++|+..|+++++++|.+ +.+|+++|.||..+| +|++|+..|.+|++++|+ ..+++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~-~~~~~ 174 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKG--DVTSAHTCFSGALTHCKN-KVSLQ 174 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTTCCC-HHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCC-HHHHH
Confidence 56789999999999999 99999999999999997 899999999999999 999999999999999999 79999
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHhh--CCCC--
Q 004055 125 RRARAFDAI---------GKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL--------GPRQEAQQDLQS--RPSP-- 183 (776)
Q Consensus 125 ~rA~ay~aL---------Gr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l--------g~~qeA~~~l~k--kl~P-- 183 (776)
.+|.+|..+ |++++|+..|++++.++|++..++..++.++..+ |++++|+..+.+ ...|
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999999 9999999999999999999999999999999999 999999999987 5678
Q ss_pred -CCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 184 -AALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 184 -~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
.++.++..+|.++..+|++++|...++++....|..
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999998877775
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=3.2e-15 Score=156.83 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP-------- 117 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP-------- 117 (776)
+..+...|..++..|+|++|+..|++++.++|.+ +.+++++|.+|..+| +|++|+..+.+++.++|
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~ 172 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTS--HQQDACEALKNWIKQNPKYKYLVKN 172 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCHHHHCC---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccc--cHHHHHHHHHHHHHhCccchHHHhh
Confidence 4568889999999999999999999999999987 889999999999998 88888888887776654
Q ss_pred ------------------------------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004055 118 ------------------------------------R--FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEI 159 (776)
Q Consensus 118 ------------------------------------~--n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~ 159 (776)
. ++.+++.+|.+|..+|++++|+..|++++.++|+++.++..
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 252 (365)
T 4eqf_A 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252 (365)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 160 ARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 160 la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
++.++...|++++|+..+.+ ...|.++.++..+|.++..+|++++|..+++++....|.
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999987 568999999999999999999999999999998765554
No 33
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.64 E-value=3.8e-15 Score=136.90 Aligned_cols=113 Identities=24% Similarity=0.370 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC--
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF-- 119 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n-- 119 (776)
..+.|..+++.|+.+|+.|+|++|+..|++||.++|.+ +.+|+|+|.||+.+| +|++|+..|.++|+++|.+
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~--~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEK--KFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhh--hHHHHHHHHHHHHHhCcccch
Confidence 45789999999999999999999999999999999998 899999999999999 9999999999999998876
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 120 -----VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 120 -----~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
..+|+++|.++..+|++++|+..|+++|.++|+ +.....+.
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 468999999999999999999999999999985 55544443
No 34
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=5.7e-16 Score=151.48 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--------DRAVFHSNRAACLMQMKPINYETVIAECTMAL 113 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--------d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL 113 (776)
-...|..++..|+.+|+.|+|++|+..|++||+++|.++. ..+.+|+|+|.|+..+| +|++|+..|++||
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--r~~eAl~~~~kAL 84 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998321 12449999999999999 9999999999999
Q ss_pred Hc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 114 QV-------QPRFVRAL----LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 114 el-------dP~n~kAl----~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
++ +|++.++| +++|.++..+|++++|+.+|+++++++|++..+...+..+...+
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99 99999999 99999999999999999999999999999988877777766654
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3.8e-15 Score=148.77 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC----HH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF----VR 121 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n----~k 121 (776)
.+.+...|..++..|+|++|+..|+++++++|.+ +.+++++|.||..+| +|++|+..|.+++. .|.+ ..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~-~~~~~~~~~~ 75 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS----PYIYNRRAVCYYELA--KYDLAQKDIETYFS-KVNATKAKSA 75 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC----STTHHHHHHHHHHTT--CHHHHHHHHHHHHT-TSCTTTCCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHh--hHHHHHHHHHHHHh-ccCchhHHHH
Confidence 3467889999999999999999999999999987 668999999999999 99999999999999 4433 55
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 122 ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 122 Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
+++.+|.+|..+|++++|+..|++++.++|++..++..++.++..+|++++|+..+.+ ...|.++..+..+|...+..
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999987 56799999999999555556
Q ss_pred CCccchhHHhhhhcCCCCC
Q 004055 200 GPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 200 G~~eeArk~~KKa~~s~P~ 218 (776)
+++++|...+.++....|.
T Consensus 156 ~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 6999999999998766555
No 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.63 E-value=7.2e-15 Score=157.56 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|++++..+|.+ +.+++++|.||+.+| ++++|+..+.+++.++|.+..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 97 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMG--KSKAALPDLTKVIQLKMDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCcHHHH
Confidence 568899999999999999999999999999999987 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHcCChHHHHHHHhh--CCCCCCH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHR---DALEIA------------RRLRTALGPRQEAQQDLQS--RPSPAAL 186 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~---~al~~l------------a~ll~~lg~~qeA~~~l~k--kl~P~~~ 186 (776)
+.+|.+|..+|++++|+..|++++.++|++. .++..+ +.++...|++++|+..+.+ ...|.++
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 177 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999998 776665 5558899999999999987 5679999
Q ss_pred HHHHHHHHHHHhCCCccchhHHhhhhcCCC
Q 004055 187 GASAVRGAPIAGLGPCLPARPVGKKAGAPA 216 (776)
Q Consensus 187 ~a~~~lA~~l~~LG~~eeArk~~KKa~~s~ 216 (776)
.++..+|.++..+|++++|...+.++....
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999976433
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=4e-15 Score=140.36 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.+..++..|..+++.|+|++|+..|+++|+++|++ +.+|+++|.||..+| ++++|+..|.++++++|+++.++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~ 102 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEE--NTDKAVECYRRSVELNPTQKDLV 102 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--chHHHHHHHHHHHHhCCCCHHHH
Confidence 456678899999999999999999999999999998 999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004055 124 LRRARAFDAIGKYEMAMQD-VQVLLGVEPNHRDALEIARRLRTALGP 169 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d-~~kAL~LdP~N~~al~~la~ll~~lg~ 169 (776)
+.+|.+|..+|++++|... ++++++++|+|+.++...+.++...|+
T Consensus 103 ~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 103 LKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887766 599999999999999999999888775
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=3e-14 Score=141.83 Aligned_cols=169 Identities=19% Similarity=0.108 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|.+++.++|.+ +.++.++|.+|..+| ++++|+..+.+++.++|.+..++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~ 114 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCccccHHH
Confidence 567889999999999999999999999999999987 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--C---------------------
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--R--------------------- 180 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--k--------------------- 180 (776)
+.+|.+|..+|++++|+..|++++.++|++......+..+ ...|++++|...+.+ .
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999998766655544 445777777766632 1
Q ss_pred ------------CCC----CCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 181 ------------PSP----AALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 181 ------------l~P----~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
..| ..+..+..+|.++..+|++++|..+++++....|..
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 111 125678889999999999999999999998877754
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=148.02 Aligned_cols=167 Identities=10% Similarity=-0.056 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 46 AHELKEEGNKRFQNK-DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 46 A~~LkeeGn~lfqkG-dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
+..+...|..++..| ++++|+..|.+++.++|.+ +.+++++|.+|..+| ++++|+..+.+++.+.|.+..+++
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~ 163 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVES--EHDQAMAAYFTAAQLMKGCHLPML 163 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhccccHHHHH
Confidence 345666666666666 6666666666666666665 555666666666666 666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC--C---------CCCCHHHHHHHH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR--P---------SPAALGASAVRG 193 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk--l---------~P~~~~a~~~lA 193 (776)
.+|.+|...|++++|+..|++++.++|+++.++..++.++...|++++|+..+.+. . .|..+.++..+|
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666655441 0 144455566666
Q ss_pred HHHHhCCCccchhHHhhhhcCCCCC
Q 004055 194 APIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 194 ~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.++..+|++++|..+++++....|.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 6666666666666666665544444
No 40
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.61 E-value=1.1e-14 Score=141.59 Aligned_cols=142 Identities=23% Similarity=0.276 Sum_probs=128.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--C----------hHHHHHHHHHHHHHcC
Q 004055 31 SNGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--D----------RAVFHSNRAACLMQMK 98 (776)
Q Consensus 31 ~~~~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d----------~A~ay~n~A~cy~~LG 98 (776)
....++++.....+.+..++..|+.++..|+|++|+..|.+++.+.|.++. . ...+++++|.||+.+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 102 (198)
T 2fbn_A 23 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK 102 (198)
T ss_dssp CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344577888999999999999999999999999999999999999998631 0 1378999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 004055 99 PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQ 174 (776)
Q Consensus 99 ~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~ 174 (776)
+|++|+..|.+++.++|.+..+++.+|.+|..+|++++|+..|++++.++|++..++..++.++..+++..++.
T Consensus 103 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 103 --DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp --CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred --CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887766554
No 41
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=2.6e-14 Score=148.70 Aligned_cols=167 Identities=19% Similarity=0.111 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|+|++|+..|+++++++|.+ +.+++++|.||..+| ++++|+..|.+++.++|.+..+++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 137 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENE--QELLAISALRRCLELKPDNQTALMA 137 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCc--CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4467788999999999999999999999999987 888999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC---------------------------------------------------CH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPN---------------------------------------------------HR 154 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~---------------------------------------------------N~ 154 (776)
+|.+|..+|++++|+..|++++.++|+ +.
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 999999999888888877776665553 56
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 155 DALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 155 ~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.++..++.++...|++++|+..+.+ ...|.++.++..+|.++..+|++++|..+++++....|.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7778888888888888888888876 457888888888888888888888888888887755554
No 42
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=99.60 E-value=2e-15 Score=133.75 Aligned_cols=80 Identities=23% Similarity=0.269 Sum_probs=71.2
Q ss_pred ccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCC--CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccc
Q 004055 291 WRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSS--KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEAD 368 (776)
Q Consensus 291 ~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~--~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~ 368 (776)
..+||++|.+|||++.+|.+++|.+|.++|++.|+.. .+|.|||+|||||+|||+||+||.+|+.+..
T Consensus 6 ~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~---------- 75 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE---------- 75 (89)
T ss_dssp CEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH----------
T ss_pred eEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHH----------
Confidence 3689999999999999999999999999999999975 6699999999999999999999999998872
Q ss_pred cCCCCCcEEEEEE
Q 004055 369 KSDSVGMLRLHIV 381 (776)
Q Consensus 369 ~~~~~g~~rL~v~ 381 (776)
.....++.|||.
T Consensus 76 -~n~~~~l~ihvf 87 (89)
T 1vd2_A 76 -LNKDSELLIHVF 87 (89)
T ss_dssp -HTSCCCEEEEEE
T ss_pred -ccCCCCEEEEEc
Confidence 135667888875
No 43
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.1e-14 Score=146.09 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
..+...|..++..|+|++|+..|++++..+|.+ ..++..++.|+..+| ++++|+..+.+++..+|.++.+++.+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH----ASCLPVHIGTLVELN--KANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----TTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHHhh--hHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 467788999999999999999999999999987 667888999999999 99999999999999999999999999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 127 ARAFDAIG-KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 127 A~ay~aLG-r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
|.++...| ++++|+..|++++.++|++..++..++.++...|++++|+..+.+ ...|.....+..+|.++..+|+++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 99999999 999999999999999999999999999999999999999999987 567888899999999999999999
Q ss_pred chhHHhhhhcCCCCC
Q 004055 204 PARPVGKKAGAPAGG 218 (776)
Q Consensus 204 eArk~~KKa~~s~P~ 218 (776)
+|..+++++....|.
T Consensus 177 ~A~~~~~~al~~~~~ 191 (330)
T 3hym_B 177 LAERFFSQALSIAPE 191 (330)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999998865554
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=3.5e-14 Score=136.35 Aligned_cols=167 Identities=16% Similarity=0.066 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH--cCCCCHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM-KPINYETVIAECTMALQ--VQPRFVRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L-G~gdyeeAi~~~~kALe--ldP~n~kA 122 (776)
+..+...|..++..|++++|+..|.+++.+.|.+ ..++.++|.+|..+ | ++++|+..+.+++. .+|.+..+
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~ 115 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLN--RPAESMAYFDKALADPTYPTPYIA 115 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTC--CHHHHHHHHHHHHTSTTCSCHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCcCCcchHHH
Confidence 4578889999999999999999999999999987 88999999999999 9 99999999999999 67777999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCC-CCHHHHHHHHHHHHhC
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSP-AALGASAVRGAPIAGL 199 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P-~~~~a~~~lA~~l~~L 199 (776)
++.+|.++...|++++|+..|++++.++|++..++..++.++...|++++|...+.+ ...| .+...+..++.++...
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999977 4568 8889998999999999
Q ss_pred CCccchhHHhhhhcCCCCC
Q 004055 200 GPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 200 G~~eeArk~~KKa~~s~P~ 218 (776)
|+++.|..+.+......|.
T Consensus 196 ~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHhCCC
Confidence 9999999998887644444
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=1.1e-14 Score=137.31 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..++..|..++..|+|++|+..|+++|.++|.+ +.+|+++|.||+.+| +|++|+..|.+++.++|++..+|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASG--QHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHH
Confidence 568899999999999999999999999999999997 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
+.+|.+|..+|++++|+.+|++++.++|++..++...+..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999998865554443
No 46
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.60 E-value=3e-14 Score=145.90 Aligned_cols=167 Identities=13% Similarity=0.010 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---CCHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP---RFVRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP---~n~kA 122 (776)
+..+...|..++..|+|++|+..|.+++.+.|.+ ..+++++|.+|..+| ++++|+..|.+++.++| .+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~ 110 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQRGHLLLKQG--KLDEAEDDFKKVLKSNPSEQEEKEA 110 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCcccChHHH
Confidence 4678999999999999999999999999999987 899999999999999 99999999999999999 88888
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 123 LLRR------------ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 123 l~~r------------A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
++.+ |.++...|++++|+..|++++.++|+++.++..++.++..+|++++|+..+.+ ...|.++..
T Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 190 (359)
T 3ieg_A 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8877 79999999999999999999999999999999999999999999999999987 678999999
Q ss_pred HHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 189 SAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 189 ~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
+..+|.++..+|++++|...++++....|.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 999999999999999999999997644443
No 47
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.60 E-value=2.8e-14 Score=148.46 Aligned_cols=167 Identities=15% Similarity=0.061 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP-------- 117 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP-------- 117 (776)
+..+...|..++..|+|++|+..|.+++.+.|.+ +.++.++|.||..+| ++++|+..+.+++.++|
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDN----QTALMALAVSFTNES--LQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 4567889999999999999999999999999987 889999999999998 88888877777666554
Q ss_pred -----------------------------------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004055 118 -----------------------------------------R--FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 118 -----------------------------------------~--n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~ 154 (776)
. ++.+++.+|.+|...|++++|+..|++++.++|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 4 678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 155 DALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 155 ~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.++..++.++..+|++++|+..+.+ ...|.++.++..+|.++..+|++++|..+++++....|.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999987 567999999999999999999999999999998754444
No 48
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.60 E-value=5.9e-14 Score=129.33 Aligned_cols=133 Identities=27% Similarity=0.456 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 004055 40 SIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF 119 (776)
Q Consensus 40 ~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n 119 (776)
....+.+..+...|..++..|+|++|+..|.+++.+.|.+ +.+++++|.|+..+| +|++|+..+.+++.++|.+
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTE--CYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCccc
Confidence 3456889999999999999999999999999999999987 899999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCChHHHHHHHh
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL--RTALGPRQEAQQDLQ 178 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l--l~~lg~~qeA~~~l~ 178 (776)
+.+++.+|.++..+|++++|+..|++++.++|++..++..++.+ +...|++++|+..+.
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999988666655 666788888887664
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=3.3e-14 Score=141.92 Aligned_cols=164 Identities=11% Similarity=0.024 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.+...|..++..|+|++|+..|.+++. .|.++...+.+|.++|.||..+| ++++|+..+.+++.++|.+..+++.+|
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~ 115 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG--QDSLAIQQYQAAVDRDTTRLDMYGQIG 115 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 678899999999999999999999999 56554445778999999999999 999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC---c
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP---C 202 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~---~ 202 (776)
.+|..+|++++|+..|++++.++|.++.++..++......+++++|+..+.+ ...|.+..++..+|.++..+|+ +
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQ 195 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhh
Confidence 9999999999999999999999999999999999545555699999999987 5779999999999999999999 9
Q ss_pred cchhHHhhhhcC
Q 004055 203 LPARPVGKKAGA 214 (776)
Q Consensus 203 eeArk~~KKa~~ 214 (776)
++|...++++..
T Consensus 196 ~~A~~~~~~a~~ 207 (272)
T 3u4t_A 196 GLAKPYYEKLIE 207 (272)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 50
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.59 E-value=9.6e-15 Score=134.42 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=110.9
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 004055 71 NALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVE 150 (776)
Q Consensus 71 KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld 150 (776)
++..++|.. +..|.++|.+|++.| +|++|+..|++||+++|.++.+|+.+|.||..+|++++|+.+|+++++++
T Consensus 4 r~a~inP~~----a~~~~~~G~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 77 (126)
T 4gco_A 4 RLAYINPEL----AQEEKNKGNEYFKKG--DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD 77 (126)
T ss_dssp ---CCCHHH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCHHH----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence 445567764 899999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHH
Q 004055 151 PNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPI 196 (776)
Q Consensus 151 P~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l 196 (776)
|++..++..++.++..+|++++|+..+.+ .++|.+..++..++.|+
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999987 68899999998888654
No 51
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=2.3e-14 Score=153.08 Aligned_cols=139 Identities=24% Similarity=0.363 Sum_probs=127.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----------CChHHHHHHHHHHHHHcCCCCHHH
Q 004055 36 DLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-----------PDRAVFHSNRAACLMQMKPINYET 104 (776)
Q Consensus 36 d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-----------~d~A~ay~n~A~cy~~LG~gdyee 104 (776)
..........+..++..|+.++..|+|++|+..|+++|.+.|.+. +..+.+|+++|.||+.+| +|++
T Consensus 137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~ 214 (336)
T 1p5q_A 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--AFSA 214 (336)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--CHHH
Confidence 444556667899999999999999999999999999999999862 112589999999999999 9999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004055 105 VIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQD 176 (776)
Q Consensus 105 Ai~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~ 176 (776)
|+..|++||+++|+++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.++..++++.++...
T Consensus 215 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888553
No 52
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=4.2e-14 Score=135.62 Aligned_cols=113 Identities=4% Similarity=-0.041 Sum_probs=105.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 32 NGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTM 111 (776)
Q Consensus 32 ~~~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~k 111 (776)
......++ +.+..++..|..+++.|+|++|+..|++++.++|.+ +.+|+++|.||..+| +|++|+..|.+
T Consensus 26 ~~al~l~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g--~~~~Ai~~~~~ 95 (151)
T 3gyz_A 26 KDINAIPD----DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKE--QFQQAADLYAV 95 (151)
T ss_dssp GGGCCSCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHhCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHc--cHHHHHHHHHH
Confidence 33455555 568899999999999999999999999999999998 899999999999999 99999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004055 112 ALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 112 ALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~ 154 (776)
|+.++|+++.+|+.+|.||..+|++++|+..|++++++.|+++
T Consensus 96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999875
No 53
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.58 E-value=1.7e-14 Score=160.83 Aligned_cols=141 Identities=21% Similarity=0.307 Sum_probs=125.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----------CChHHHHHHHHHHHHHcCCCCHH
Q 004055 35 VDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-----------PDRAVFHSNRAACLMQMKPINYE 103 (776)
Q Consensus 35 ~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-----------~d~A~ay~n~A~cy~~LG~gdye 103 (776)
+..........+..++..|+.+++.|+|.+|+..|.+||.++|.++ +....+|+|+|.||+++| +|+
T Consensus 257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~ 334 (457)
T 1kt0_A 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--EYT 334 (457)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc--CHH
Confidence 3456667778899999999999999999999999999999999862 112689999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 104 TVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 104 eAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
+|+..|++||.++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..++++.++...+
T Consensus 335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877654
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=2.8e-14 Score=140.57 Aligned_cols=145 Identities=21% Similarity=0.163 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH------
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV------ 120 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~------ 120 (776)
..+...|..++..|+|++|+..|.+++.++|.+ +.+++++|.||..+| +|++|+..+.+++.++|++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~ 116 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL----ANAYIGKSAAYRDMK--NNQEYIATLTEGIKAVPGNATIEKLY 116 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch----HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 466779999999999999999999999999986 899999999999999 99999999999999999999
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCh---------------------------
Q 004055 121 -RALLRRARAFDAIGKYEMAMQDVQVLLGVEPN--HRDALEIARRLRTALGPR--------------------------- 170 (776)
Q Consensus 121 -kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~--N~~al~~la~ll~~lg~~--------------------------- 170 (776)
.+|+.+|.++..+|++++|+..|+++++++|+ +..++..++.++...|+.
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAF 196 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999 999999999999988887
Q ss_pred HHHHHHHhh--CCCCCCHHHHHHHHHHHH
Q 004055 171 QEAQQDLQS--RPSPAALGASAVRGAPIA 197 (776)
Q Consensus 171 qeA~~~l~k--kl~P~~~~a~~~lA~~l~ 197 (776)
++|+..+.+ .+.|.+..+...++.+..
T Consensus 197 ~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 197 KKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888888877 678999998888776544
No 55
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=4.8e-14 Score=124.84 Aligned_cols=120 Identities=30% Similarity=0.513 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..++..|..++..|+|++|+..|++++.+.|.+ ..+++++|.||..+| ++++|+..+.+++.++|.+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLL--EFQLALKDCEECIQLEPTFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCCchHHH
Confidence 347899999999999999999999999999999987 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP 169 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~ 169 (776)
+.+|.++..+|++++|+..|++++.++|++..++..++.++..+|+
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999887653
No 56
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=3.9e-14 Score=131.18 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=114.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 33 GGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA 112 (776)
Q Consensus 33 ~~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kA 112 (776)
.....++ +.+..+...|..++..|+|++|+..|++++.++|.+ +.+++++|.||..+| +|++|+..|.++
T Consensus 9 ~al~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~a 78 (142)
T 2xcb_A 9 MLRGLSE----DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLG--LYEQALQSYSYG 78 (142)
T ss_dssp CCTTCCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHcCCH----HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHh--hHHHHHHHHHHH
Confidence 3445555 457789999999999999999999999999999998 899999999999999 999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004055 113 LQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG 168 (776)
Q Consensus 113 LeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg 168 (776)
+.++|+++.+++.+|.||..+|++++|+..|++++.++|+++........+...++
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777766665543
No 57
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.56 E-value=1.4e-14 Score=169.39 Aligned_cols=156 Identities=12% Similarity=0.018 Sum_probs=147.1
Q ss_pred HHCCCHHHHHHHHHHHH--------HhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 57 FQNKDYVGALEQYDNAL--------RLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 57 fqkGdyeeAle~Y~KAL--------kLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
+..|++++|+..|++++ ..+|.+ +.+++++|.+|+.+| +|++|+..|+++++++|++..+|+.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES----VELPLMEVRALLDLG--DVAKATRKLDDLAERVGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC----SHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc----hhHHHHHHHHHHhcC--CHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 88999999999999999 888887 789999999999999 9999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
+|..+|++++|+..|+++++++|++..++..++.++..+|++++ +..|.+ ..+|.+..+++.+|.++..+|++++|.
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999 888877 678999999999999999999999999
Q ss_pred HHhhhhcCCCCCC
Q 004055 207 PVGKKAGAPAGGL 219 (776)
Q Consensus 207 k~~KKa~~s~P~~ 219 (776)
..+.++....|..
T Consensus 555 ~~~~~al~l~P~~ 567 (681)
T 2pzi_A 555 RTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHTSCTTSTTH
T ss_pred HHHHhhcccCccc
Confidence 9999998777764
No 58
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.56 E-value=1.4e-14 Score=169.45 Aligned_cols=148 Identities=16% Similarity=0.039 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
..+...|..++..|+|++|+..|+++++++|++ +.+|+++|.+|+.+| +|++|+..|++|++++|++..+++.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTG--DYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 467888999999999999999999999999998 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
|.+|..+|++++ +..|+++++++|++..++..++.++..+|++++|+..+.+ .++|.+..++..+|.++...+.
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999 9999999999999999999999999999999999999988 5789999999999999877666
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=1.1e-13 Score=131.42 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|++++|+..|.+++...|.. +.++.++|.++...+ +++.|+..+.+++.++|.+..+++.
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~~~~~~~~~ 112 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----AEAYYILGSANFMID--EKQAAIDALQRAIALNTVYADAYYK 112 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCccchHHHHH
Confidence 5678999999999999999999999999999997 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCC
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAA 185 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~ 185 (776)
+|.+|..+|++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+ .++|.+
T Consensus 113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999999999999999999999987 455644
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=161.82 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcC
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM---------KPINYETVIAECTMALQVQ 116 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L---------G~gdyeeAi~~~~kALeld 116 (776)
+..+...|..++..|+|++|+..|+++++++|+ +.++.++|.+|..+ | +|++|+..|.+|++++
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~lg~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----KVSLQNLSMVLRQLQTDSGDEHSR--HVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHTTCCCSCHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHhccCChhhhhh--hHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999987 68899999999999 9 9999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCC
Q 004055 117 PRFVRALLRRARAFDAI--------GKYEMAMQDVQVLLGVEP---NHRDALEIARRLRTALGPRQEAQQDLQS--RPSP 183 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aL--------Gr~deAl~d~~kAL~LdP---~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P 183 (776)
|++..+|+.+|.+|..+ |++++|+..|++++.++| +++.++..++.++..+|++++|+..+.+ ...|
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999 999999999999999999 9999999999999999999999999987 6789
Q ss_pred CCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 184 AALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 184 ~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
.+..++..++.++..+|++++|.....+
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999877655
No 61
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.56 E-value=2e-13 Score=119.55 Aligned_cols=121 Identities=25% Similarity=0.418 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|+.|+..|.+++.+.|.+ +.+++++|.|+..+| ++++|+..+.+++..+|.+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLG--NYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhh--chHHHHHHHHHHHhcCccCHHHH
Confidence 678899999999999999999999999999999987 889999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPR 170 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~ 170 (776)
+.+|.++..+|++++|+..|++++.++|++..++..++.++..+|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999988764
No 62
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.1e-14 Score=153.36 Aligned_cols=166 Identities=29% Similarity=0.292 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kA 122 (776)
.+.+..++..|+.++..|+|++|+..|++++..+|+ +.+++++|.||+.+| +|++|+..|.++++++|++..+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~ 75 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVG--DLKKVVEMSTKALELKPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCSCCHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHh--hHHHHHHHHHHHhccChHHHHH
Confidence 478999999999999999999999999999999984 789999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------------------------------------------------
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------------------------------------------------- 153 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------------------------------------------------- 153 (776)
++.+|.+|..+|++++|+..|++++.++|.+
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 9999999999999999999999999998744
Q ss_pred ------------------------------HHHHHHHHHHHHH---cCChHHHHHHHhh--C-----C--C-------CC
Q 004055 154 ------------------------------RDALEIARRLRTA---LGPRQEAQQDLQS--R-----P--S-------PA 184 (776)
Q Consensus 154 ------------------------------~~al~~la~ll~~---lg~~qeA~~~l~k--k-----l--~-------P~ 184 (776)
..++...+.+... .|++++|+..+.+ . . . |.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 5555556665554 7889999988876 2 3 2 45
Q ss_pred CHHHHHHHHHHHHhCCCccchhHHhhhhcCC
Q 004055 185 ALGASAVRGAPIAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 185 ~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s 215 (776)
.+..+..+|.++...|++++|...+.++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 5678888999999999999999999997643
No 63
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.56 E-value=2.9e-14 Score=136.56 Aligned_cols=160 Identities=12% Similarity=0.009 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
+.+...|..++..|+|++|+..|++++.++|++ +.+++++|.+|+.+| ++++|+..+.+++..+| ++..+..+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g--~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETK--QFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTT--CHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCC--CHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 357788999999999999999999999999998 899999999999999 99999999999999999 88877776
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCC--HHHHHHHHHHHHhCCC
Q 004055 127 ARAFD-AIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAA--LGASAVRGAPIAGLGP 201 (776)
Q Consensus 127 A~ay~-aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~--~~a~~~lA~~l~~LG~ 201 (776)
+.+.. ..+....|+..|++++.++|+++.++..++.++...|++++|+..+.+ ...|.. ..++..++.++..+|+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 65533 334455689999999999999999999999999999999999999987 556654 6689999999999999
Q ss_pred ccchhHHhhhhc
Q 004055 202 CLPARPVGKKAG 213 (776)
Q Consensus 202 ~eeArk~~KKa~ 213 (776)
.++|...++++.
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999999988864
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=3.3e-14 Score=147.80 Aligned_cols=164 Identities=23% Similarity=0.296 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..++..|+.++..|+|++|+..|+++|.++|.+ +.+|+++|.||+.+| +|++|+..|.+|+.++|++..+++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ--QPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6789999999999999999999999999999987 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHH------------------------HcCChHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHR-----DALEIARRLRT------------------------ALGPRQEAQQD 176 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~-----~al~~la~ll~------------------------~lg~~qeA~~~ 176 (776)
+|.+|..+|++++|+..|++++.++|+++ .+...+..... ..|++++|+..
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~ 157 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEE 157 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999763 22222111100 13445555555
Q ss_pred Hhh--CCCCCCHHHHHHHHHHHHhC-CCccchhHHhhhhcCC
Q 004055 177 LQS--RPSPAALGASAVRGAPIAGL-GPCLPARPVGKKAGAP 215 (776)
Q Consensus 177 l~k--kl~P~~~~a~~~lA~~l~~L-G~~eeArk~~KKa~~s 215 (776)
+.. ...|.+......++..+... +.+++|...+.++...
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 544 34565555555555545444 5566777777665543
No 65
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.55 E-value=9.2e-14 Score=152.13 Aligned_cols=111 Identities=35% Similarity=0.530 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 35 VDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 35 ~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
.........+.+..++..|+.++..|+|++|+..|++++.++|.+ +.+++++|.||+.+| +|++|+..|.+++.
T Consensus 14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g--~~~~A~~~~~~al~ 87 (537)
T 3fp2_A 14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTG--DLEKVIEFTTKALE 87 (537)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence 445666777899999999999999999999999999999999997 899999999999999 99999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 115 VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 115 ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
++|++..+++.+|.+|..+|++++|+..|+ ++.++|+
T Consensus 88 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 88 IKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred cCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence 999999999999999999999999988774 5544444
No 66
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=8.2e-14 Score=131.47 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.+..+...|..++..|+|++|+..|++++.++|.+ +.+++++|.||..+| +|++|+..|.+++.++|+++.++
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMG--QYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCTHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcCCCCchHH
Confidence 457789999999999999999999999999999998 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA 166 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~ 166 (776)
+.+|.+|..+|++++|+..|+++++++|+++........+...
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 135 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999988765555554443
No 67
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.54 E-value=6.2e-14 Score=145.99 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
...+...|..++..|++++|+..|++++.++|++ +.+++++|.+|+.+| ++++|+..+.+++..+|++...++.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g--~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALN--RSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTT--CHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCC--CHHHHHHHHHhCchhhcchHHHHHH
Confidence 4568899999999999999999999999999998 899999999999999 9999999999999999988888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCC--HHHHHHHHHHHHhCCC
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAA--LGASAVRGAPIAGLGP 201 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~--~~a~~~lA~~l~~LG~ 201 (776)
.+..+...++.+.|+..|++++.++|+++.++..++.++...|++++|+..+.+ +..|.+ ..++..++.++..+|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 888899999999999999999999999999999999999999999999999987 566777 8899999999999999
Q ss_pred ccchhHHhhhhc
Q 004055 202 CLPARPVGKKAG 213 (776)
Q Consensus 202 ~eeArk~~KKa~ 213 (776)
.++|...++++.
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999999888764
No 68
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=2.3e-13 Score=117.33 Aligned_cols=116 Identities=25% Similarity=0.403 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.+..+...|..++..|+|++|+..|.+++.+.|.+ +.+++++|.|+..+| +|++|+..+.+++..+|.+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKG--DYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhCcccHHHH
Confidence 357889999999999999999999999999999987 889999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
+.+|.++..+|++++|+..|++++.++|+++.++..++.+..
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998887753
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.54 E-value=9.9e-14 Score=144.13 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT--HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF 119 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~--~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n 119 (776)
+.+.+..+...|+.+...|+|++|+..|.+++.+.+.. ++..+.+|.++|.||..+| +|++|+..|.+|+.+.|..
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHc
Confidence 55667778888999999999999999999999996532 1234789999999999999 9999999999999998754
Q ss_pred ------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHhh--CCCCC
Q 004055 120 ------VRALLRRARAFDAI-GKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGPRQEAQQDLQS--RPSPA 184 (776)
Q Consensus 120 ------~kAl~~rA~ay~aL-Gr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~ 184 (776)
..++..+|.+|... |++++|+..|++++.+.|.+ ..++..++.++..+|++++|+..+.+ ...|.
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 56899999999995 99999999999999999865 46788999999999999999999987 34444
Q ss_pred CH-------HHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 185 AL-------GASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 185 ~~-------~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.. .++..+|.++..+|++++|..++.++....|.
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 32 25778899999999999999999999877665
No 70
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.54 E-value=1.8e-13 Score=149.74 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=159.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 004055 38 DSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP 117 (776)
Q Consensus 38 D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP 117 (776)
+.......+..+...|..++..|++++|+..|.+++.++|. ..+++++|.+|..+| ++++|+..+.+++..+|
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-----PNSYIFLALTLADKE--NSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHTCCSS--CCHHHHHHHHHHHHHCT
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhc--CHHHHHHHHHHHhccCC
Confidence 34445567888999999999999999999999999999987 678999999999999 99999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHH
Q 004055 118 RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAP 195 (776)
Q Consensus 118 ~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~ 195 (776)
.++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.++...|++++|+..+.+ ...|.++..+..+|.+
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 5679999999999999
Q ss_pred HHhCCCccchhHHhhhhc
Q 004055 196 IAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 196 l~~LG~~eeArk~~KKa~ 213 (776)
+..+|++++|...++++.
T Consensus 388 ~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 999999999999999975
No 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=3.4e-13 Score=130.54 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..++..|..++..|+|++|+..|.+++ +| + +.+++++|.||..+| +|++|+..|.+++.++|.+..++
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 74 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H----SRICFNIGCMYTILK--NMTEAEKAFTRSINRDKHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C----hHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCccchHHH
Confidence 456788999999999999999999999995 44 3 789999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHhh--CCCCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHR----------------DALEIARRLRTALGPRQEAQQDLQS--RPSPAA 185 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~----------------~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~ 185 (776)
+.+|.+|..+|++++|+..|++++.+.|.+. .++..++.++..+|++++|...+.+ ...|..
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999999999999999877 8999999999999999999998877 566655
Q ss_pred HH
Q 004055 186 LG 187 (776)
Q Consensus 186 ~~ 187 (776)
..
T Consensus 155 ~~ 156 (213)
T 1hh8_A 155 RH 156 (213)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 72
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.53 E-value=2.2e-13 Score=146.05 Aligned_cols=166 Identities=13% Similarity=0.035 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH-
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR- 126 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r- 126 (776)
.+...|..++..|++++|+..|.+++.+.|.+ +.+++++|.+|..+| ++++|+..+.+++.++|.+..++..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDN----TEAFYKISTLYYQLG--DHELSLSEVRECLKLDQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 34445555555555555555555555555554 566666666666666 66666666666666666666655444
Q ss_pred -----------HHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHH
Q 004055 127 -----------ARAFDAIGKYEMAMQDVQVLLGVEPNHRD----ALEIARRLRTALGPRQEAQQDLQS--RPSPAALGAS 189 (776)
Q Consensus 127 -----------A~ay~aLGr~deAl~d~~kAL~LdP~N~~----al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~ 189 (776)
|.++...|++++|+..|++++.++|+++. ++..++.++..+|++++|+..+.+ ...|.++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 66666666666666666666666666643 555666666667777777776665 3467777777
Q ss_pred HHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 190 AVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 190 ~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
..+|.++..+|++++|...++++....|..
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 777777777777777777777776655553
No 73
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.53 E-value=4.6e-14 Score=143.33 Aligned_cols=166 Identities=12% Similarity=0.040 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|+|++|+..|++++...|.+ +.++.++|.++..+| ++++|+..+.+++.++|.+..+++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~ 94 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENE--KDGLAIIALNHARMLDPKDIAVHAA 94 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 4568899999999999999999999999999987 889999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIA--------------RR-LRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~l--------------a~-ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
+|.+|...|++++|+..|++++.++|.+..++..+ +. ++...|++++|+..+.+ ...|.++..
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999999999999988777766 55 56667788888888876 567888999
Q ss_pred HHHHHHHHHhCCCccchhHHhhhhcCCCC
Q 004055 189 SAVRGAPIAGLGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 189 ~~~lA~~l~~LG~~eeArk~~KKa~~s~P 217 (776)
+..+|.++..+|++++|..+++++....|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP 203 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998764433
No 74
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.53 E-value=7.7e-14 Score=151.96 Aligned_cols=133 Identities=23% Similarity=0.472 Sum_probs=124.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------hCCCCCCChHHHHHHHHHHHHHcCCCC
Q 004055 38 DSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALR----------------LTPKTHPDRAVFHSNRAACLMQMKPIN 101 (776)
Q Consensus 38 D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALk----------------LdP~~~~d~A~ay~n~A~cy~~LG~gd 101 (776)
+.....+.+..++..|+.++..|+|++|+..|+++|+ ++|.. +.+|+++|.||+.+| +
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~----~~~~~nla~~~~~~g--~ 288 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA----LSCVLNIGACKLKMS--D 288 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH----HHHHHHHHHHHHHTT--C
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH----HHHHHHHHHHHHhcc--C
Confidence 5677888999999999999999999999999999999 55543 889999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004055 102 YETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQD 176 (776)
Q Consensus 102 yeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~ 176 (776)
|++|+..|.+||+++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..++++.++...
T Consensus 289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887776553
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=6.8e-14 Score=158.21 Aligned_cols=153 Identities=17% Similarity=0.010 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 004055 60 KDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMA 139 (776)
Q Consensus 60 GdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deA 139 (776)
|++++|+..|+++++++|.+ +.+++++|.+|..+| +|++|+..++++++++|++..+++.+|.+|..+|++++|
T Consensus 3 g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMG--DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ------------------CC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666666666654 556666666666666 666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC---CCccchhHHhhhhcC
Q 004055 140 MQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL---GPCLPARPVGKKAGA 214 (776)
Q Consensus 140 l~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L---G~~eeArk~~KKa~~ 214 (776)
+..|+++++++|++..++..++.++..+|++++|+..+.+ ...|.+..++..++.++..+ |++++|...++++..
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666665554 34555666666666666666 666666666665554
Q ss_pred CCCC
Q 004055 215 PAGG 218 (776)
Q Consensus 215 s~P~ 218 (776)
..|.
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 4444
No 76
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=1.3e-13 Score=124.26 Aligned_cols=117 Identities=27% Similarity=0.423 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+..+...|..++..|+|++|+..|.+++.++|.+ +.+++++|.||+.+| +|++|+..|.+++.++|.++.+++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ--QPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCchhHHHHH
Confidence 37789999999999999999999999999999997 899999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHc
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPN-----HRDALEIARRLRTAL 167 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~-----N~~al~~la~ll~~l 167 (776)
.+|.+|..+|++++|+..|++++.++|+ +..+...+..+....
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 777777777776554
No 77
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=1.5e-14 Score=154.82 Aligned_cols=140 Identities=24% Similarity=0.365 Sum_probs=103.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChH-----------------HHHHHHHHHHHH
Q 004055 34 GVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRA-----------------VFHSNRAACLMQ 96 (776)
Q Consensus 34 ~~d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A-----------------~ay~n~A~cy~~ 96 (776)
.+++...+..+.+..++..|+.++..|+|++|+..|.++|.+.|.+ . .+|+|+|.||+.
T Consensus 167 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~----~~~~~~~~~~~~~~~l~~~~~~nla~~~~~ 242 (338)
T 2if4_A 167 RSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD----FMFQLYGKYQDMALAVKNPCHLNIAACLIK 242 (338)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH----HHHTCCHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc----hhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788889999999999999999999999999999999999975 3 389999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CChHHHHH
Q 004055 97 MKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL-GPRQEAQQ 175 (776)
Q Consensus 97 LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l-g~~qeA~~ 175 (776)
+| +|++|+..|+++|.++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.... +..+.+..
T Consensus 243 ~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LK--RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TT--CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999999999999999999885544 34444555
Q ss_pred HHhh
Q 004055 176 DLQS 179 (776)
Q Consensus 176 ~l~k 179 (776)
.+.+
T Consensus 321 ~~~~ 324 (338)
T 2if4_A 321 MYKG 324 (338)
T ss_dssp ----
T ss_pred HHHH
Confidence 5443
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=6.2e-14 Score=165.97 Aligned_cols=138 Identities=20% Similarity=0.118 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004055 80 HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEI 159 (776)
Q Consensus 80 ~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~ 159 (776)
.|+.+.+|+|+|.+|..+| +|++|+..|++||+++|++..+|+++|.+|..+|++++|+..|+++++++|++..++.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQG--NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 160 ARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 160 la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
++.++..+|++++|+..|.+ .++|.++.++..+|.+|..+|++++|...++++....|..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999988 6789999999999999999999999999999999888876
No 79
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.51 E-value=1.1e-13 Score=140.49 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ----------- 114 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe----------- 114 (776)
+..+...|..++..|+|++|+..|.+++.+.|.+ ..++.++|.+|..+| ++++|+..+.+++.
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~ 128 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEH--NANAALASLRAWLLSQPQYEQLGSV 128 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSTTTTTC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4567788999999999999999999999999987 889999999998888 88777776666554
Q ss_pred --------------------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 004055 115 --------------------------------------VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA 156 (776)
Q Consensus 115 --------------------------------------ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a 156 (776)
.+|.+..+++.+|.+|...|++++|+..+++++.++|++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 208 (327)
T 3cv0_A 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 455566778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 157 LEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 157 l~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
+..++.++...|++++|+..+.+ ...|.+..++..+|.++..+|++++|..+++++....|.
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 88888888888888888888766 456778888888888888888888888888887644433
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.50 E-value=1.2e-13 Score=136.65 Aligned_cols=169 Identities=21% Similarity=0.156 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTP----KTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---- 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP----~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---- 115 (776)
..+..+...|..++..|+|++|+..|.+++.+.. .+++..+.++.++|.+|..+| +|++|+..+.+++.+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999841 112345889999999999999 999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHhhC---
Q 004055 116 ----QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV--------EPNHRDALEIARRLRTALGPRQEAQQDLQSR--- 180 (776)
Q Consensus 116 ----dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L--------dP~N~~al~~la~ll~~lg~~qeA~~~l~kk--- 180 (776)
+|....+++.+|.+|..+|++++|+..|++++.+ +|....++..++.++..+|++++|+..+.+.
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999 7778889999999999999999999887651
Q ss_pred ------------------------------------------------CCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 181 ------------------------------------------------PSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 181 ------------------------------------------------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
..|....++..+|.++..+|++++|..+++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12445567888999999999999999999987
Q ss_pred cC
Q 004055 213 GA 214 (776)
Q Consensus 213 ~~ 214 (776)
..
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 81
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.8e-13 Score=136.21 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=140.2
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 004055 57 FQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKY 136 (776)
Q Consensus 57 fqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~ 136 (776)
...|+|++|+..|.+++...+..++..+.+++++|.+|..+| ++++|+..+.+++.++|.++.+++.+|.+|..+|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 345789999999999999865544456889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 137 EMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 137 deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
++|+..|++++.++|++..++..++.++..+|++++|+..+.+ ...|.+.......+.+ ...|++++|...+.++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987 5678888766666544 666999999999988664
Q ss_pred CCC
Q 004055 215 PAG 217 (776)
Q Consensus 215 s~P 217 (776)
..|
T Consensus 173 ~~~ 175 (275)
T 1xnf_A 173 KSD 175 (275)
T ss_dssp HSC
T ss_pred cCC
Confidence 333
No 82
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.8e-13 Score=119.13 Aligned_cols=118 Identities=34% Similarity=0.588 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+..++..|..++..|+|++|+..|++++.+.|.+ +....+++++|.||+.+| +|++|+..|.+++.++|.+..+++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLE--DYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhhCccCHHHHH
Confidence 37789999999999999999999999999999863 123688999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
.+|.+|..+|++++|+..|++++.++|++..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988887754
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.49 E-value=2.5e-13 Score=137.06 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCC
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQ--------MKPINYETVIAECTMALQVQP 117 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~--------LG~gdyeeAi~~~~kALeldP 117 (776)
+..++..|.+++..|+|++|+..|++++.+.|++ +..+.+++++|.||+. +| ++++|+..+.+++..+|
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQID-PRVPQAEYERAMCYYKLSPPYELDQT--DTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHCCCTTSCCH--HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHHHHCc
Confidence 6788999999999999999999999999999975 4567899999999999 88 99999999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------
Q 004055 118 RFVRAL-----------------LRRARAFDAIGKYEMAMQDVQVLLGVEPN---HRDALEIARRLRTAL---------- 167 (776)
Q Consensus 118 ~n~kAl-----------------~~rA~ay~aLGr~deAl~d~~kAL~LdP~---N~~al~~la~ll~~l---------- 167 (776)
++..+. +.+|.+|..+|++++|+..|++++..+|+ .+.++..++.++..+
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 986655 89999999999999999999999999998 567999999999977
Q ss_pred CChHHHHHHHhh--CCCCCCH---HHHHHHHHHHHhCCCccchhH
Q 004055 168 GPRQEAQQDLQS--RPSPAAL---GASAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 168 g~~qeA~~~l~k--kl~P~~~---~a~~~lA~~l~~LG~~eeArk 207 (776)
|++++|+..+.+ ...|+++ .+...++.++..+++++.+..
T Consensus 209 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 209 ERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred chHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 888999999877 4567764 456667777777777666543
No 84
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.49 E-value=5.6e-13 Score=148.51 Aligned_cols=168 Identities=12% Similarity=-0.054 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..+++.|++++|+..|++++.+.|.+ ..+|++++.+|.+.| ++++|+..|.+++..+|.+..+++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEG--EHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCccchHHHHH
Confidence 5566677777788888888888888887777775 667777777777777 7777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CC------CCCC-HHHHHHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RP------SPAA-LGASAVRGAPI 196 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl------~P~~-~~a~~~lA~~l 196 (776)
+|.+|...|++++|+..|++++.++|.++.++..++.++...|++++|+..+.+ .. .|.. ...+..++.++
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777776655 11 3443 56666777777
Q ss_pred HhCCCccchhHHhhhhcCCCCCC
Q 004055 197 AGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
...|++++|...++++....|..
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCC
Confidence 77777777777777766555543
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.48 E-value=1.2e-12 Score=114.34 Aligned_cols=127 Identities=25% Similarity=0.329 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
..+...|..++..|++++|+..|.+++...|.+ ..+++++|.++...| ++++|+..+.+++..+|.+..+++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhc--CHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 457788999999999999999999999999886 888999999999999 99999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
|.++...|++++|+..+++++.+.|.+..++..++.++...|++++|...+..
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887764
No 86
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.48 E-value=9.3e-13 Score=146.73 Aligned_cols=167 Identities=11% Similarity=-0.127 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
...+...|..+.+.|++++|+..|++++.+.|.+ ..++.++|.+|...| ++++|+..+++++..+|.++.+|+.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT----HLPYLFLGMQHMQLG--NILLANEYLQSSYALFQYDPLLLNE 480 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC----SHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3456677777888888888888888888887765 667777888888887 8888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGV------EPNH-RDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPI 196 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~L------dP~N-~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l 196 (776)
+|.+|...|++++|+..|++++.+ +|++ ..++..++.++...|++++|+..+.+ ...|.++..+..++.+|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 888888888888888888888777 5654 67777788888888888888877766 45677778888888888
Q ss_pred HhCCCccchhHHhhhhcCCCCC
Q 004055 197 AGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 197 ~~LG~~eeArk~~KKa~~s~P~ 218 (776)
...|++++|..+++++....|.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCC
Confidence 8888888888888777655555
No 87
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.47 E-value=1.1e-12 Score=116.78 Aligned_cols=120 Identities=17% Similarity=0.086 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRAL 123 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl 123 (776)
..++..|..++..|+|++|+..|.+++...|.+ +..+.+++++|.||+.+| +|++|+..|.+++..+|++ +.++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATR--NFQLAEAQFRDLVSRYPTHDKAAGGL 79 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHCCCCcccHHHH
Confidence 457889999999999999999999999999986 233478999999999999 9999999999999999999 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP 169 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~ 169 (776)
+.+|.+|..+|++++|+..|++++...|+++.+......+....++
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999888877776655443
No 88
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=4e-14 Score=135.78 Aligned_cols=114 Identities=9% Similarity=-0.035 Sum_probs=106.6
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 67 EQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 67 e~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
..|++++.++|++ +.+++++|.+++.+| +|++|+..|++++.++|+++.+|+.+|.||..+|++++|+..|+++
T Consensus 23 ~~l~~al~l~p~~----~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 23 ATLKDINAIPDDM----MDDIYSYAYDFYNKG--RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp CCTGGGCCSCHHH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHhCCCHHH----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5578889999986 899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCH
Q 004055 147 LGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAAL 186 (776)
Q Consensus 147 L~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~ 186 (776)
+.++|+++.+++.++.++..+|++++|+..|.+ .+.|+.+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999987 4455443
No 89
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.46 E-value=1.1e-13 Score=130.62 Aligned_cols=122 Identities=13% Similarity=-0.023 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 66 LEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 66 le~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
-..|++++.++|.+ ...++++|.+++..| +|++|+..|.+++.++|.++.+++.+|.+|..+|++++|+..|++
T Consensus 7 ~~~~~~al~~~p~~----~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 7 GGTIAMLNEISSDT----LEQLYSLAFNQYQSG--XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp CCSHHHHTTCCHHH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhh----HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35688999999986 889999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHH
Q 004055 146 LLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRG 193 (776)
Q Consensus 146 AL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA 193 (776)
++.++|+++.++..++.++..+|++++|+..+.+ ...|.++.....+.
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 9999999999999999999999999999999987 45566665544443
No 90
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2e-13 Score=148.01 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
..+...|..++..|++++|+..|.+++.+.|.+ ..++.++|.+|..+| ++++|+..+.+++..+|.++.+++.+
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l 378 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN----IFPYIQLACLAYREN--KFDDCETLFSEAKRKFPEAPEVPNFF 378 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC----SHHHHHHHHHTTTTT--CHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHcccCHHHHHHH
Confidence 467788889999999999999999999998886 678889999999988 99999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCChHHHHHHHhh--CCCCCCHHHHHHHHHH
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRD------ALEIARRLRTA---LGPRQEAQQDLQS--RPSPAALGASAVRGAP 195 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~------al~~la~ll~~---lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~ 195 (776)
|.+|..+|++++|+..|++++.++|+++. ++..++.++.. .|++++|+..+.+ ...|.++.++..+|.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999999999999999999999888865 88889999998 8999999988876 5678888899999999
Q ss_pred HHhCCCccchhHHhhhhcCCCCCC
Q 004055 196 IAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 196 l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
+..+|++++|..+++++....|..
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHhcCHHHHHHHHHHHHHhcccc
Confidence 999999999999999887666653
No 91
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=3.7e-12 Score=110.46 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
.+..+...|..++..|+|++|+..|.+++...|.+ ..+++++|.++...| ++++|+..+.+++..+|.+..+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCccHHHHH
Confidence 36788999999999999999999999999999986 889999999999999 999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG 168 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg 168 (776)
.+|.+|..+|++++|+..|++++.++|+++.++..++.++...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998877654
No 92
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=4.6e-13 Score=122.12 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.++..|..++..|+|++|+..|++++.++|.+ +.+++++|.|+..+| ++++|+..|.+|++++|++..+++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENE--KDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47889999999999999999999999999998 899999999999999 999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004055 128 RAFDAIGKYEMAMQDVQVLLGVEPNHRD 155 (776)
Q Consensus 128 ~ay~aLGr~deAl~d~~kAL~LdP~N~~ 155 (776)
.+|..+|++++|+..|+++++++|++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999998754
No 93
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.45 E-value=1.7e-12 Score=135.95 Aligned_cols=163 Identities=12% Similarity=-0.048 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..+...|++++|+..|.+ |.+ ..++.++|.+|.++| ++++|+..+.+++..+|++....+.
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~----~~~~~~l~~~~~~~g--~~~~A~~~l~~~~~~~p~~~~~~l~ 169 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-----GDS----LECMAMTVQILLKLD--RLDLARKELKKMQDQDEDATLTQLA 169 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcCcHHHHHH
Confidence 34567777777888888888877776 544 778888888888888 8888888888888888887655444
Q ss_pred HHHH--HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 126 RARA--FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 126 rA~a--y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
.+.+ +...|++++|+..|++++..+|+++.++..++.++..+|++++|...+.+ ...|.++.++..+|.++..+|+
T Consensus 170 ~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 170 TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4422 23347888888888888888888888888888888888888888888877 5678888888888888888888
Q ss_pred ccc-hhHHhhhhcCCCCCC
Q 004055 202 CLP-ARPVGKKAGAPAGGL 219 (776)
Q Consensus 202 ~ee-Ark~~KKa~~s~P~~ 219 (776)
+.+ +..++++.....|.+
T Consensus 250 ~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 250 PPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 875 567777777666664
No 94
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=1.1e-12 Score=115.05 Aligned_cols=118 Identities=26% Similarity=0.370 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---- 119 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---- 119 (776)
+.+..+...|..++..|+|+.|+..|.+++.+.|.+ +.+++++|.||..+| +|++|+..|.+++.++|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKG--DYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhccccchhH
Confidence 457889999999999999999999999999999987 899999999999999 9999999999999999887
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004055 120 ---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG 168 (776)
Q Consensus 120 ---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg 168 (776)
..+++.+|.+|..+|++++|+..|++++.+.| ++.+...++.+...++
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 6888888888877654
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=5.6e-12 Score=116.68 Aligned_cols=128 Identities=15% Similarity=0.225 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|++++|+..|.+++.+.|.+ ..++.++|.++..+| ++++|+..+.+++..+|.+..+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQ--KYDLAVPLLIKVAEANPINFNVRFR 115 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCcHhHHHHHH
Confidence 5678899999999999999999999999999987 889999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+|.++..+|++++|+..|++++.++|.++.++..++.++...|++++|...+.+
T Consensus 116 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998865
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=5.7e-14 Score=150.06 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=135.3
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---------------HHH
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---------------VRA 122 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---------------~kA 122 (776)
..++|++|+..|.+++...|.. +.+++++|.+|+.+| +|++|+..|.+|+.++|.+ ..+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~----a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQ----STIVKERGTVYFKEG--KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHH----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHH----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 3466778889999999988875 899999999999999 9999999999999999999 699
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCC
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLG 200 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG 200 (776)
|+.+|.||..+|++++|+.+|++++.++|++..++..++.++..+|++++|+..|.+ .+.|.+..++..++.++..+|
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 678999999999999999999
Q ss_pred CccchhH
Q 004055 201 PCLPARP 207 (776)
Q Consensus 201 ~~eeArk 207 (776)
++.+|.+
T Consensus 279 ~~~~a~~ 285 (336)
T 1p5q_A 279 RQLAREK 285 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999944
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=6.8e-13 Score=125.80 Aligned_cols=133 Identities=11% Similarity=0.082 Sum_probs=114.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HH
Q 004055 53 GNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA-FD 131 (776)
Q Consensus 53 Gn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a-y~ 131 (776)
+..++..|+|++|+..|.+++..+|.+ +.+++++|.+|+.+| +|++|+..|.+++.++|.++.+++.+|.+ +.
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQN----SEQWALLGEYYLWQN--DYSNSLLAYRQALQLRGENAELYAALATVLYY 90 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344567889999999999999999987 889999999999999 99999999999999999999999999999 88
Q ss_pred HcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHH
Q 004055 132 AIGKY--EMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAV 191 (776)
Q Consensus 132 aLGr~--deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~ 191 (776)
..|++ ++|+..|++++.++|++..++..++.++...|++++|+..+.+ ...|.+.....+
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 99998 9999999999999999999999999999999999999998877 566666544333
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=2.4e-12 Score=133.65 Aligned_cols=173 Identities=13% Similarity=-0.002 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCCC-
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQM-KPINYETVIAECTMALQVQPRF- 119 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~L-G~gdyeeAi~~~~kALeldP~n- 119 (776)
..+..+...|..+...|+|++|+..|++||.+.|.... ..+.++.++|.+|... | +|++|+..|++|+.+.|.+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--DYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHhCC
Confidence 34778899999999999999999999999999875321 2357899999999995 9 9999999999999998864
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHhh--CCCCCC
Q 004055 120 -----VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRD-------ALEIARRLRTALGPRQEAQQDLQS--RPSPAA 185 (776)
Q Consensus 120 -----~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~-------al~~la~ll~~lg~~qeA~~~l~k--kl~P~~ 185 (776)
..++..+|.+|..+|++++|+..|++++.+.|++.. ++..++.++..+|++.+|+..+.+ .+.|..
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999998754 578899999999999999999987 556765
Q ss_pred HHH-----HHHHHHHHH--hCCCccchhHHhhhhcCCCCC
Q 004055 186 LGA-----SAVRGAPIA--GLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 186 ~~a-----~~~lA~~l~--~LG~~eeArk~~KKa~~s~P~ 218 (776)
... ...++.++. ..+++.+|...+.+.....|.
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 543 222344443 467788888888776655443
No 99
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.42 E-value=3.5e-13 Score=124.74 Aligned_cols=125 Identities=15% Similarity=0.013 Sum_probs=109.6
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 67 EQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 67 e~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
..|.+++.++|.+ ...++++|.+++..| +|++|+..|.+++.++|.++.+++.+|.+|..+|++++|+..|+++
T Consensus 5 ~~l~~al~~~p~~----~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 5 GTLAMLRGLSEDT----LEQLYALGFNQYQAG--KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp ----CCTTCCHHH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHH----HHHHHHHHHHHHHHc--cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678888888876 889999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHH
Q 004055 147 LGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIA 197 (776)
Q Consensus 147 L~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~ 197 (776)
+.++|+++.++..++.++..+|++++|+..+.+ ...|.++.....+..+..
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999987 455666665555544433
No 100
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=1e-11 Score=125.61 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQ----MKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~----LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
+..+...|..++..|++++|+..|+++++ |.+ +.+++++|.+|.. .+ ++++|+..+.++++++ ++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~----~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKE----NSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTC----HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT--CHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC----HHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCC--CHH
Confidence 45667777777777777777777777777 333 5667777777777 66 7777777777777764 677
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHhhCCCCCCHHHHHHHH
Q 004055 122 ALLRRARAFDA----IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA----LGPRQEAQQDLQSRPSPAALGASAVRG 193 (776)
Q Consensus 122 Al~~rA~ay~a----LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~----lg~~qeA~~~l~kkl~P~~~~a~~~lA 193 (776)
+++.+|.+|.. .+++++|+..|++++.++ ++.++..++.++.. .+++++|+..+.+.....++.++..+|
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 153 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 77777777777 777777777777777663 67777777777777 777777777776633334566667777
Q ss_pred HHHHh----CCCccchhHHhhhhc
Q 004055 194 APIAG----LGPCLPARPVGKKAG 213 (776)
Q Consensus 194 ~~l~~----LG~~eeArk~~KKa~ 213 (776)
.++.. .+++++|..+++++.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHH
Confidence 77776 777777777777765
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.41 E-value=2.4e-12 Score=145.52 Aligned_cols=142 Identities=11% Similarity=0.008 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
+..+...|..++..|+|++|+..|+++++++|.+ +.+++++|.+|..+| +|++|+..|.++++++|++..+++.
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQ--RHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5689999999999999999999999999999997 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CChHHHHHHHhh--CCCCCCHHHHHHHH
Q 004055 126 RARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL---GPRQEAQQDLQS--RPSPAALGASAVRG 193 (776)
Q Consensus 126 rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l---g~~qeA~~~l~k--kl~P~~~~a~~~lA 193 (776)
+|.+|..+|++++|+..|+++++++|++..++..++.++..+ |++++|...+.+ ...|.....+..++
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999999999999999999999999999999999999999 999999999877 45666655554444
No 102
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=4.9e-13 Score=134.76 Aligned_cols=169 Identities=21% Similarity=0.171 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLT-----PKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ-- 116 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLd-----P~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-- 116 (776)
..+..+...|..++..|+|++|+..|.+++.+. +. ++..+.++.++|.+|..+| ++++|+..+.+++.+.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-HPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREK 143 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHH
Confidence 346678889999999999999999999999984 21 2335789999999999999 9999999999999884
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHhhC--
Q 004055 117 ------PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV--------EPNHRDALEIARRLRTALGPRQEAQQDLQSR-- 180 (776)
Q Consensus 117 ------P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L--------dP~N~~al~~la~ll~~lg~~qeA~~~l~kk-- 180 (776)
|....+++.+|.+|..+|++++|+..|++++.+ +|....++..++.++..+|++++|...+.+.
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667889999999999999999999999999998 7778889999999999999999999887651
Q ss_pred -------------------------------------------------CCCCCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 181 -------------------------------------------------PSPAALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 181 -------------------------------------------------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
..|..+.++..+|.++..+|++++|..++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2356677888999999999999999999998
Q ss_pred hcCC
Q 004055 212 AGAP 215 (776)
Q Consensus 212 a~~s 215 (776)
+...
T Consensus 304 al~l 307 (311)
T 3nf1_A 304 AMRS 307 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 103
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.6e-12 Score=114.32 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+..+.++|.+++..| +|++|+..|.+++.++|.++.+++.+|.+|..+|++++|+.+|++++.++|++..++..++.
T Consensus 3 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKS--DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4778999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhh--CCC------CCCHHHHHHHHHHHHh
Q 004055 163 LRTALGPRQEAQQDLQS--RPS------PAALGASAVRGAPIAG 198 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k--kl~------P~~~~a~~~lA~~l~~ 198 (776)
++..+|++++|+..+.+ ... |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999977 455 8888887777766543
No 104
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=8.7e-12 Score=129.99 Aligned_cols=162 Identities=10% Similarity=-0.060 Sum_probs=142.8
Q ss_pred HHHHHHHHHH-------HCCCH-------HHHHHHHHHHHH-hCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 48 ELKEEGNKRF-------QNKDY-------VGALEQYDNALR-LTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMA 112 (776)
Q Consensus 48 ~LkeeGn~lf-------qkGdy-------eeAle~Y~KALk-LdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kA 112 (776)
.+...|..+. ..|++ ++|+..|++||. +.|++ ..+|.++|.++..+| ++++|+..|+++
T Consensus 52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~a 125 (308)
T 2ond_A 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADYEESRM--KYEKVHSIYNRL 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 4555555554 56886 999999999999 79987 889999999999999 999999999999
Q ss_pred HHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCChHHHHHHHhh--CCCCCCHHH
Q 004055 113 LQVQPRFVR-ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA-LGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 113 LeldP~n~k-Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~-lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
|.++|.++. +|+.+|.++...|++++|+..|+++++++|.+..++...+.+... .|++++|...|.+ ...|.++.+
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 205 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 999999987 999999999999999999999999999999998887665555433 6999999999987 566899999
Q ss_pred HHHHHHHHHhCCCccchhHHhhhhcCC
Q 004055 189 SAVRGAPIAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 189 ~~~lA~~l~~LG~~eeArk~~KKa~~s 215 (776)
+..++..+..+|++++|+..+.++...
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998753
No 105
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=8.5e-13 Score=140.02 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------C
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV------Q 116 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------d 116 (776)
...+..+...|..++..|+|++|+..|++++++.|.++...+.+++++|.+|+.+| +|++|+..+.+++.+ +
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCc
Confidence 36788899999999999999999999999999999874334578999999999999 999999999999998 6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC-----------------hHHH
Q 004055 117 PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV------EPNHRDALEIARRLRTALGP-----------------RQEA 173 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L------dP~N~~al~~la~ll~~lg~-----------------~qeA 173 (776)
|....+++.+|.+|..+|++++|+..|++++.+ .|....++..++.++..+|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 778899999999999999999999999999999 66778899999999999999 9999
Q ss_pred HHHHhhC--------CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 174 QQDLQSR--------PSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 174 ~~~l~kk--------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+..+.+. ..|....++..+|.++..+|++++|..++.++.
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8887652 123445678889999999999999999999964
No 106
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=9.3e-13 Score=132.75 Aligned_cols=168 Identities=20% Similarity=0.142 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK----THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---- 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~----~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---- 115 (776)
..+..+...|..++..|+|++|+..|++++.+... .++..+.++.++|.+|..+| ++++|+..+.+++.+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999997211 12235889999999999999 999999999999988
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHhh--CC
Q 004055 116 ----QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVE--------PNHRDALEIARRLRTALGPRQEAQQDLQS--RP 181 (776)
Q Consensus 116 ----dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld--------P~N~~al~~la~ll~~lg~~qeA~~~l~k--kl 181 (776)
+|....+++.+|.+|..+|++++|+..|++++.+. |....++..++.++...|++++|+..+.+ ..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999984 66678889999999999999999998876 22
Q ss_pred --------CCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 182 --------SPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 182 --------~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.|.....+..+|.++..+|++++|..+++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556678889999999999999999999976
No 107
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=4.9e-12 Score=137.00 Aligned_cols=171 Identities=15% Similarity=0.011 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPK-----THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV----- 115 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~-----~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel----- 115 (776)
+..+...|.+++..|+|++|+..|++|+++.+. .++..+..|.|+|.+|..+| +|++|+.++++++.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhcc
Confidence 456778999999999999999999999998432 13445889999999999999 999999999999987
Q ss_pred ---CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCChHHHHHHHhh--CCCCCC
Q 004055 116 ---QPRFVRALLRRARAFDAIG--KYEMAMQDVQVLLGVEPNHRDALEIARRLRTA---LGPRQEAQQDLQS--RPSPAA 185 (776)
Q Consensus 116 ---dP~n~kAl~~rA~ay~aLG--r~deAl~d~~kAL~LdP~N~~al~~la~ll~~---lg~~qeA~~~l~k--kl~P~~ 185 (776)
++..+.++..+|.++..+| +|++|+..|++++.++|+++.++..++.+... .++.++|+..+.+ .++|.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 3456889999998887765 69999999999999999999999999888654 5677788888766 578999
Q ss_pred HHHHHHHHHHHHhC----CCccchhHHhhhhcCCCCC
Q 004055 186 LGASAVRGAPIAGL----GPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 186 ~~a~~~lA~~l~~L----G~~eeArk~~KKa~~s~P~ 218 (776)
..++..+|..+..+ +++++|..+++++....|.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~ 245 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc
Confidence 99988888776654 6778999999987644444
No 108
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.4e-12 Score=139.42 Aligned_cols=173 Identities=9% Similarity=-0.051 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT----HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~----~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
+..+...|..++..|+|++|+.+|++++.+.+.. +++.+.++.++|.+++.++.++|++|+..|.+|++++|+++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4456788999999999999999999999985532 345688999999999998767899999999999999999999
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CChHHHHHHHhh--CCCCCCHHHHHHH
Q 004055 122 ALLRRARAFDA---IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL----GPRQEAQQDLQS--RPSPAALGASAVR 192 (776)
Q Consensus 122 Al~~rA~ay~a---LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l----g~~qeA~~~l~k--kl~P~~~~a~~~l 192 (776)
+++.+|.++.. .+++++|+..|++++.++|++..++..++..+..+ +++.+|...+.+ ...|....++..+
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l 253 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 99999998655 47778999999999999999999999998877665 456778888876 5679999999999
Q ss_pred HHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 193 GAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 193 A~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
|.++...|++++|...++++....|.
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 99999999999999999998755444
No 109
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=99.39 E-value=8.9e-13 Score=115.66 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=67.9
Q ss_pred ccceeEeeccceeEEeccC--CCCHHHHHHHHHhHCCCCC-ceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccc
Q 004055 291 WRPLKLVYDHDIRLGQMPV--NCSFKALREIVSKRFPSSK-SVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEA 367 (776)
Q Consensus 291 ~~~vK~~~~~DiR~~~v~~--~~~~~~L~~~v~~kF~~~~-~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~ 367 (776)
...||..|+.|+|+++++. ..+|.+|..+|++.|+... +|.|.|.|+|||||||+++|+|.+|++++
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a---------- 75 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASG---------- 75 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSS----------
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhC----------
Confidence 3578999999999999974 4899999999999999432 69999999999999999999999999887
Q ss_pred ccCCCCCcEEEEEE
Q 004055 368 DKSDSVGMLRLHIV 381 (776)
Q Consensus 368 ~~~~~~g~~rL~v~ 381 (776)
.+.+||+|+
T Consensus 76 -----~plLRl~Iq 84 (86)
T 1wmh_B 76 -----PPPLRLLVQ 84 (86)
T ss_dssp -----SSCEEEEEE
T ss_pred -----CCcEEEEEE
Confidence 238999997
No 110
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.38 E-value=2.4e-11 Score=122.76 Aligned_cols=160 Identities=12% Similarity=0.006 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCC
Q 004055 46 AHELKEEGNKRFQ----NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQ----MKPINYETVIAECTMALQVQP 117 (776)
Q Consensus 46 A~~LkeeGn~lfq----kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~----LG~gdyeeAi~~~~kALeldP 117 (776)
+..+...|..++. .+++++|+..|++++++. + +.+++++|.+|.. .+ ++++|+..+.+++..+
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~- 108 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y----SNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDLK- 108 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHcC-
Confidence 3467778888888 888888888888888874 2 6788888888888 77 8888888888888874
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHhhCCCCCCHHHH
Q 004055 118 RFVRALLRRARAFDA----IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA----LGPRQEAQQDLQSRPSPAALGAS 189 (776)
Q Consensus 118 ~n~kAl~~rA~ay~a----LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~----lg~~qeA~~~l~kkl~P~~~~a~ 189 (776)
++.+++.+|.+|.. .+++++|+..|++++.++ ++.++..++.++.. .+++++|+..+.+.....++.++
T Consensus 109 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 185 (273)
T 1ouv_A 109 -YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGC 185 (273)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 78888888888888 888888888888888876 67788888888887 78888888888774444567788
Q ss_pred HHHHHHHHh----CCCccchhHHhhhhcCCCC
Q 004055 190 AVRGAPIAG----LGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 190 ~~lA~~l~~----LG~~eeArk~~KKa~~s~P 217 (776)
..+|.++.. .+++++|..+++++....+
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 888888888 8888888888888765433
No 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=1.6e-12 Score=138.53 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=142.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC-------C
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR-------F 119 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~-------n 119 (776)
++..|..++..|+|++|+..|.+++.+....+ +..+.+++++|.+|..+| +++.|+..+.+|+.+.+. .
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCccchHHH
Confidence 44599999999999999999999999844321 235789999999999999 999999999999998443 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCChHHHHHHHhhC-------CC-CCC
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR------DALEIARRLRTALGPRQEAQQDLQSR-------PS-PAA 185 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~------~al~~la~ll~~lg~~qeA~~~l~kk-------l~-P~~ 185 (776)
..+++.+|.+|..+|++++|+..|++++.+.|... .++..++.++..+|++++|+..+.+. .. |..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 56899999999999999999999999999866443 58889999999999999999988762 34 777
Q ss_pred HHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 186 LGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 186 ~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+.++..+|.++..+|++++|..+++++.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8889999999999999999999999976
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=7.4e-12 Score=109.25 Aligned_cols=131 Identities=21% Similarity=0.145 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLR 164 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll 164 (776)
.+++++|.++...| ++++|+..+.+++..+|.+..+++.+|.++...|++++|+..|++++.++|.+..++..++.++
T Consensus 2 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcC--cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 46789999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCC
Q 004055 165 TALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 165 ~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P 217 (776)
...|++++|...+.. ...|.....+..++.++..+|++++|..+++++....|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999876 56788899999999999999999999999998765444
No 113
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.36 E-value=1.4e-11 Score=128.96 Aligned_cols=163 Identities=10% Similarity=0.023 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRL--TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkL--dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
...+...+..+...+++++|+..|++.+.. +|++ +.+++.+|.+|+..| ++++|+..|++ |.+..++
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----~~~~~~la~~~~~~g--~~~~Al~~l~~-----~~~~~~~ 133 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----TTFLLMAASIYFYDQ--NPDAALRTLHQ-----GDSLECM 133 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----HHHHHHHHHHHHHTT--CHHHHHHHHTT-----CCSHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHhC-----CCCHHHH
Confidence 567888899999999999999999999986 5876 889999999999999 99999999987 8999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR--RLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la--~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
+.+|.+|..+|++++|+..|++++.++|++.......+ .++...|++++|...+.+ ...|.++.++..+|.++..+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999875544333 333334789999999987 45799999999999999999
Q ss_pred CCccchhHHhhhhcCCCCCC
Q 004055 200 GPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 200 G~~eeArk~~KKa~~s~P~~ 219 (776)
|++++|...++++....|..
T Consensus 214 g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 99999999999998777764
No 114
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.36 E-value=3.2e-13 Score=150.52 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---------------HHHH
Q 004055 59 NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---------------VRAL 123 (776)
Q Consensus 59 kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---------------~kAl 123 (776)
.++|++|+..|.+++...|.. +..+.++|.+|+.+| +|.+|+..|.+||.++|.+ ..+|
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~----a~~~~~~G~~~~~~g--~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQ----AAIVKEKGTVYFKGG--KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHH----HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 345677888888888888875 889999999999999 9999999999999999999 7999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+++|.||..+|+|++|+.+|+++|.++|++..+++.++.++..++++++|+..|.+ .+.|.+..++..++.++..+++
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 7889999999999999999999
Q ss_pred ccchhHHh
Q 004055 202 CLPARPVG 209 (776)
Q Consensus 202 ~eeArk~~ 209 (776)
+.+|.+..
T Consensus 401 ~~~a~~~~ 408 (457)
T 1kt0_A 401 HNERDRRI 408 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 115
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.9e-12 Score=130.30 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------CCC
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV------QPR 118 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------dP~ 118 (776)
.+..+...|..++..|+|++|+..|++++.+.|.++...+.++.++|.+|..+| +|++|+..+.+++.+ .|.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHH
Confidence 356788999999999999999999999999999864444678999999999999 999999999999988 556
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--------------------hHH
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGP--------------------RQE 172 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~--------------------~qe 172 (776)
...+++.+|.+|..+|++++|+..|++++.+.|.. ..++..++.++..+|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 68899999999999999999999999999987654 3488889999999999 888
Q ss_pred HHHHHhhC--------CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 173 AQQDLQSR--------PSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 173 A~~~l~kk--------l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
|...+.+. ..|.....+..+|.++..+|++++|..+++++.
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88877651 123345578889999999999999999999864
No 116
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=6.8e-13 Score=149.07 Aligned_cols=129 Identities=27% Similarity=0.476 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.+..++..|+.++..|+|++|+..|+++|+++|.+ +.+++++|.||..+| +|++|+..|.+|++++|.++.++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTE--CYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHH
Confidence 567788899999999999999999999999999997 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCChHHHHHHHh
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL--RTALGPRQEAQQDLQ 178 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l--l~~lg~~qeA~~~l~ 178 (776)
+.+|.+|..+|++++|+..|+++++++|++..++..++.+ +...+++++|+..+.
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999888 666677777777665
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1.7e-11 Score=127.80 Aligned_cols=168 Identities=8% Similarity=-0.104 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAV-FHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~-ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
+..+...|..+...|++++|...|+++|++.|.+ +. +|.++|.++..+| ++++|+..|.+|++.+|.+..+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~ 172 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----PTLVYIQYMKFARRAE--GIKSGRMIFKKAREDARTRHHVYV 172 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----THHHHHHHHHHHHHHH--CHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----ccHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4578889999999999999999999999999986 44 8999999999999 999999999999999999999988
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--C---CCC-CCHHHHHHHHHHHH
Q 004055 125 RRARAFDA-IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--R---PSP-AALGASAVRGAPIA 197 (776)
Q Consensus 125 ~rA~ay~a-LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--k---l~P-~~~~a~~~lA~~l~ 197 (776)
..+.+... +|++++|+..|+++++++|+++.++..++.++..+|++++|+..|.+ . ..| .....+..++..+.
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 77776544 79999999999999999999999999999999999999999999987 2 245 36778888899999
Q ss_pred hCCCccchhHHhhhhcCCCCCC
Q 004055 198 GLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 198 ~LG~~eeArk~~KKa~~s~P~~ 219 (776)
..|+++.|..+.+++....|.+
T Consensus 253 ~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHSCHHHHHHHHHHHHHHTTTT
T ss_pred HcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999988766664
No 118
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.34 E-value=9.1e-12 Score=117.26 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=104.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 82 DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 82 d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
..+..++++|.+++..| +|++|+..|.+++.++|.+..+|+.+|.+|..+|++++|+.+|++++.++|++..++..++
T Consensus 9 ~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARK--EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35788999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHH
Q 004055 162 RLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIA 197 (776)
Q Consensus 162 ~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~ 197 (776)
.++..+|++++|+..+.+ .+.|.+..+++.++...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999987 566888776666655443
No 119
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=135.91 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------CCCC
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV------QPRF 119 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------dP~n 119 (776)
+..+...|..++..|+|++|+..|++++.+.|.++...+.++.++|.+|..+| +|++|+..+.+++.+ .|..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhccccHHH
Confidence 67889999999999999999999999999999864445678999999999999 999999999999988 4556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--------------------hHHH
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGP--------------------RQEA 173 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~--------------------~qeA 173 (776)
..+++.+|.+|..+|++++|+..|++++.+.|.. ..++..++.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 8899999999999999999999999999998754 4588899999999999 9999
Q ss_pred HHHHhhC------C--CCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 174 QQDLQSR------P--SPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 174 ~~~l~kk------l--~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+..+.+. . .|.....+..+|.++..+|++++|..++.++.
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8887651 1 23445678889999999999999999999965
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.34 E-value=2.1e-11 Score=106.53 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+..++.+|.+++..| +|+.|+..+.+++..+|.+..+++.+|.++..+|++++|+..|.+++.++|++..++..++.
T Consensus 11 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVE--NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 4778999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCcc
Q 004055 163 LRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCL 203 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~e 203 (776)
++..+|++++|...+.+ ...|.+..++..++.++..+|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999977 567899999999999999988763
No 121
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=7e-12 Score=133.56 Aligned_cols=168 Identities=13% Similarity=0.007 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----cC
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQ-----VQ 116 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-----ld 116 (776)
..+..+...|..+...|+|++|+..|.+++.+.+... +..+.++.++|.||..+| +|++|+..+.+|+. .+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--QYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhcc
Confidence 4577899999999999999999999999999876432 235678999999999999 99999999999999 56
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---hHHHHHHHhhC-CCCCCH
Q 004055 117 -PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVE-----PNHRDALEIARRLRTALGP---RQEAQQDLQSR-PSPAAL 186 (776)
Q Consensus 117 -P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld-----P~N~~al~~la~ll~~lg~---~qeA~~~l~kk-l~P~~~ 186 (776)
|....+++.+|.+|..+|++++|+..+++++.+. |.....+..++.++...|+ ..+|+..+.+. ..|...
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 339 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHH
Confidence 8889999999999999999999999999999984 4444456678888888888 78888888764 335556
Q ss_pred HHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 187 GASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 187 ~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.++..+|.++..+|++++|..+++++.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 678889999999999999999999976
No 122
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.33 E-value=2e-12 Score=115.75 Aligned_cols=104 Identities=11% Similarity=0.067 Sum_probs=90.5
Q ss_pred HCCCHHHHHHHHHHHHHh---CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 58 QNKDYVGALEQYDNALRL---TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG 134 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkL---dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG 134 (776)
..|+|++|+..|+++|.+ +|.+ +.+++++|.||+.+| +|++|+..+.++++++|+++.+++.+|.+|..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~----~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL----AECYLGLGSTFRTLG--EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence 468999999999999999 4654 899999999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 135 KYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 135 r~deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
++++|+..|++++.++|+++.+......+....
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999998876555444443
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.33 E-value=3.5e-11 Score=119.76 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC----------------CCCHHHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK----------------PINYETVIAEC 109 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG----------------~gdyeeAi~~~ 109 (776)
...+...|..++..|+|++|+..|++++++.|++ +....+++++|.|+..++ .|++++|+..+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~-~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 4578899999999999999999999999999986 334568999999998731 23999999999
Q ss_pred HHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC
Q 004055 110 TMALQVQPRFVRAL-----------------LRRARAFDAIGKYEMAMQDVQVLLGVEPNHR---DALEIARRLRTALGP 169 (776)
Q Consensus 110 ~kALeldP~n~kAl-----------------~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~---~al~~la~ll~~lg~ 169 (776)
.+++..+|++..+. +.+|.+|+..|++++|+..|+++++..|+++ .++..++.++..+|+
T Consensus 120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 99999999987554 6789999999999999999999999999986 679999999999999
Q ss_pred hHHHHHHHhh
Q 004055 170 RQEAQQDLQS 179 (776)
Q Consensus 170 ~qeA~~~l~k 179 (776)
+++|+..+..
T Consensus 200 ~~~A~~~~~~ 209 (225)
T 2yhc_A 200 NAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999998875
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=108.36 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=111.6
Q ss_pred CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004055 81 PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIA 160 (776)
Q Consensus 81 ~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~l 160 (776)
+.....++++|.+++..| +|++|+..+.+++..+|.+..+++.+|.+|..+|++++|+..|++++.++|++..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKG--DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTT--CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 456889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC
Q 004055 161 RRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGP 201 (776)
Q Consensus 161 a~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~ 201 (776)
+.++..+|++++|+..+.+ ...|.+..++..++.++..+|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999987 5678888999999998887653
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=2.2e-11 Score=112.06 Aligned_cols=129 Identities=18% Similarity=0.126 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+..++++|.+++..| +|++|+..+.+++..+|.+..+++.+|.++..+|++++|+..|++++.++|+++.++..++.
T Consensus 12 ~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4678999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHH--HHhCCCccchhHHhhhhc
Q 004055 163 LRTALGPRQEAQQDLQS--RPSPAALGASAVRGAP--IAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~--l~~LG~~eeArk~~KKa~ 213 (776)
++..+|++++|+..+.+ ...|.+...+..++.+ +...|++++|....++..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999987 5678888887555444 888899999999988754
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.32 E-value=7.2e-12 Score=131.02 Aligned_cols=172 Identities=14% Similarity=0.023 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR-- 118 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~-- 118 (776)
...+..+...|+.+...|+|++|+..|.+++.+.+... ...+.+|.++|.+|..+| +|++|+..|.+|+.+.+.
T Consensus 33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g 110 (307)
T 2ifu_A 33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ--RMPEAVQYIEKASVMYVENG 110 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHcC
Confidence 34556666778999999999999999999999976432 134678999999999999 999999999999998542
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHhhC--CCCC--
Q 004055 119 ----FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGPRQEAQQDLQSR--PSPA-- 184 (776)
Q Consensus 119 ----n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~~qeA~~~l~kk--l~P~-- 184 (776)
...++..+|.+|.. |++++|+..|++++.+.|.. ..++..++.++..+|++++|+..+.+. ..|.
T Consensus 111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 25789999999998 99999999999999998754 577889999999999999999998772 2111
Q ss_pred ----CHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 185 ----ALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 185 ----~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
...++..++.++..+|++++|..+++++. ..|.
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 13467778999999999999999999998 6665
No 127
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=4.3e-11 Score=118.10 Aligned_cols=129 Identities=14% Similarity=0.025 Sum_probs=111.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF 130 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay 130 (776)
..|..++..|+|++|+..|+++|+++|.+ +.+++++|.+|+.+| ++++|+..|.++++++|+++.+++.+|.+|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRG--QEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 39999999999999999999999999998 899999999999999 999999999999999999999999999999
Q ss_pred HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCH
Q 004055 131 DAIGK--YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAAL 186 (776)
Q Consensus 131 ~aLGr--~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~ 186 (776)
+..|+ ...+...|.+++..+|. ..+++..+.++..+|++++|+..|.+ .+.|...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 87764 55677888887654432 34677789999999999999999988 5677643
No 128
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=2.9e-12 Score=126.71 Aligned_cols=156 Identities=18% Similarity=0.119 Sum_probs=131.7
Q ss_pred HHCCCHHHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCCCHHHHH
Q 004055 57 FQNKDYVGALEQYDNALRLTP----KTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--------QPRFVRALL 124 (776)
Q Consensus 57 fqkGdyeeAle~Y~KALkLdP----~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--------dP~n~kAl~ 124 (776)
...|+++.|+..|++++.+.. ..++..+.++.++|.+|..+| +|++|+..+.+++.+ +|....+++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 345666777777777777531 122346889999999999999 999999999999988 466788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CC--------CCCCH
Q 004055 125 RRARAFDAIGKYEMAMQDVQVLLGV--------EPNHRDALEIARRLRTALGPRQEAQQDLQS--RP--------SPAAL 186 (776)
Q Consensus 125 ~rA~ay~aLGr~deAl~d~~kAL~L--------dP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl--------~P~~~ 186 (776)
.+|.+|..+|++++|+..|++++.+ +|....++..++.++..+|++++|+..+.+ .. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999998 577788999999999999999999998876 22 45556
Q ss_pred HHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 187 GASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 187 ~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
.++..+|.++..+|++++|..++.++..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788999999999999999999998763
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=1.7e-11 Score=104.82 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--CHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR--FVRAL 123 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~--n~kAl 123 (776)
+..+...|..++..|+|++|+..|.+++.+.|.+ ..+++++|.+|..+| +|++|+..+.+++.++|. +..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLE--RYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCcccchHHHH
Confidence 3456788999999999999999999999999987 889999999999999 999999999999999999 99999
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q 004055 124 LRRARAFDAI-GKYEMAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 124 ~~rA~ay~aL-Gr~deAl~d~~kAL~LdP~N~ 154 (776)
+.+|.++..+ |++++|+..+++++...|.++
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999 999999999999999999763
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=2.4e-12 Score=124.97 Aligned_cols=144 Identities=15% Similarity=0.071 Sum_probs=123.4
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH----------------
Q 004055 57 FQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV---------------- 120 (776)
Q Consensus 57 fqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~---------------- 120 (776)
-..|+|+.|.+.|.......+.. +..+.++|.+++..| +|++|+..|.+++.+.|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQS----AFDIKEEGNEFFKKN--EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------CCCSGGGCCHHHHHHH----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHH----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 34566677777776655555543 788999999999999 99999999999999999887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHh
Q 004055 121 RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAG 198 (776)
Q Consensus 121 kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~ 198 (776)
.+++.+|.||..+|++++|+.+|++++.++|++..++..++.++..+|++++|+..+.+ ...|.+..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999987 5789999999999999999
Q ss_pred CCCccchh
Q 004055 199 LGPCLPAR 206 (776)
Q Consensus 199 LG~~eeAr 206 (776)
++++.++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 88888777
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.30 E-value=2.4e-10 Score=118.00 Aligned_cols=167 Identities=15% Similarity=0.035 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF--- 119 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n--- 119 (776)
....+...+..++..|+|++|+..|.+++...+.... .....++++|.++...| +|++|+..+.+|+...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCch
Confidence 4556788999999999999999999999999876411 12345778899999998 9999999999999876544
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCChHHHHHHHhhC--C-----C
Q 004055 120 ---VRALLRRARAFDAIGKYEMAMQDVQVLL---GVEPNHR----DALEIARRLRTALGPRQEAQQDLQSR--P-----S 182 (776)
Q Consensus 120 ---~kAl~~rA~ay~aLGr~deAl~d~~kAL---~LdP~N~----~al~~la~ll~~lg~~qeA~~~l~kk--l-----~ 182 (776)
..+++.+|.+|..+|++++|+..|++++ ...|++. .++.+++.++..+|++++|+..+.+. . .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 6799999999999999999999999999 5567654 68899999999999999999988762 1 1
Q ss_pred -CCCHHHHHHHHHHHHhCCCccch-hHHhhhhc
Q 004055 183 -PAALGASAVRGAPIAGLGPCLPA-RPVGKKAG 213 (776)
Q Consensus 183 -P~~~~a~~~lA~~l~~LG~~eeA-rk~~KKa~ 213 (776)
.....++..+|.++..+|++++| ..+++++.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 12267789999999999999999 88787764
No 132
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.9e-11 Score=130.42 Aligned_cols=168 Identities=13% Similarity=0.012 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----cC
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT--HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ-----VQ 116 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~--~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-----ld 116 (776)
..+..+...|..++..|+|++|+..|.+++.+.+.. +...+.++.++|.||..+| +|++|+..+.+|+. .+
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--DDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhCC
Confidence 567888999999999999999999999999985432 1235678999999999999 99999999999999 88
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---hHHHHHHHhhC-CCCCCHH
Q 004055 117 PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVE-----PNHRDALEIARRLRTALGP---RQEAQQDLQSR-PSPAALG 187 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld-----P~N~~al~~la~ll~~lg~---~qeA~~~l~kk-l~P~~~~ 187 (776)
|....+++.+|.+|..+|++++|+..+++++.+. |.....+..++.++...++ ..+|+..+.+. ..|....
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~ 337 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA 337 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHH
Confidence 9889999999999999999999999999999984 4445556667777777777 78888888763 3345556
Q ss_pred HHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 188 ASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 188 a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
.+..+|.++..+|++++|..+++++.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77889999999999999999999865
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.29 E-value=4.7e-11 Score=113.07 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH-HHHcCCCCH--HHHHHHHHHHHHcCCCCHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAAC-LMQMKPINY--ETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~c-y~~LG~gdy--eeAi~~~~kALeldP~n~kA 122 (776)
+..+...|..++..|+|++|+..|.+++.++|.+ +.+++++|.+ |+..| ++ ++|+..+.+++.++|.+..+
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~--~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQAS--QHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhCCCcHHH
Confidence 4678999999999999999999999999999987 8899999999 88998 98 99999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
++.+|.+|..+|++++|+..|++++.++|++......+..+
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999999999999999999999999987665554443
No 134
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.7e-11 Score=130.75 Aligned_cols=168 Identities=18% Similarity=0.156 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC-----
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR----- 118 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~----- 118 (776)
...++..|..++..|+|++|+..|.+|+.+.+..+ +..+.+++++|.+|..+| +++.|+..+.+|+.+.+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCch
Confidence 34577899999999999999999999999865432 346789999999999999 999999999999987443
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHhh--C-----CCC
Q 004055 119 --FVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN------HRDALEIARRLRTALGPRQEAQQDLQS--R-----PSP 183 (776)
Q Consensus 119 --n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~------N~~al~~la~ll~~lg~~qeA~~~l~k--k-----l~P 183 (776)
...+++.+|.+|..+|++++|+..|++++.+.+. ...++..++.++..+|++++|+..+.+ . ..|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2568999999999999999999999999997441 245788899999999999999998876 2 557
Q ss_pred CCHHHHHHHHHHHHhCCCccchhHHhhhhcCC
Q 004055 184 AALGASAVRGAPIAGLGPCLPARPVGKKAGAP 215 (776)
Q Consensus 184 ~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s 215 (776)
..+.++..+|.++..+|++++|..+++++...
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888999999999999999999999997643
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.28 E-value=1.7e-10 Score=99.19 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+..++.+|.+++..| +|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..+++++.++|++..++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVG--NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4678999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHH
Q 004055 163 LRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPI 196 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l 196 (776)
++..+|++++|...+.+ ...|.++..+..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999977 67899998888877654
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=5.9e-11 Score=114.73 Aligned_cols=131 Identities=11% Similarity=-0.047 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
+..++++|.+++..| +|++|+..|.+++ +| ++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+
T Consensus 6 ~~~~~~~g~~~~~~~--~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKK--DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456889999999999 9999999999995 44 789999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhh--CCCCCCH----------------HHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 164 RTALGPRQEAQQDLQS--RPSPAAL----------------GASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 164 l~~lg~~qeA~~~l~k--kl~P~~~----------------~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
+..+|++++|+..+.+ ...|.+. .++..+|.++..+|++++|...++++....|..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999977 4555554 899999999999999999999999999877763
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.27 E-value=1.4e-10 Score=100.37 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+.+++++|.++...| ++++|+..+.+++..+|.+..+++.+|.++...|++++|+..|++++.++|.+..++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 3678999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCC
Q 004055 163 LRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLG 200 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG 200 (776)
++...|++++|...+.+ ...|.++.++..++.++..+|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999977 567999999999998876543
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.27 E-value=1.5e-11 Score=115.46 Aligned_cols=119 Identities=19% Similarity=0.139 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQV------------------QPRFVRALLRRARAFDAIGKYEMAMQDVQ 144 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------------------dP~n~kAl~~rA~ay~aLGr~deAl~d~~ 144 (776)
.+..+.++|.+++..| +|++|+..|.+||.+ +|.+..+|+.+|.||..+|++++|+.+|+
T Consensus 10 ~a~~~~~~G~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQK--DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4678999999999999 999999999999999 78888999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCH-HHHHHHHHHHHhCCCcc
Q 004055 145 VLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAAL-GASAVRGAPIAGLGPCL 203 (776)
Q Consensus 145 kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~-~a~~~lA~~l~~LG~~e 203 (776)
+++.++|+++.++..++.++..+|++++|+..+.+ .+.|.+. .....++.+...++.+.
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 6788888 55666666655544433
No 139
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.26 E-value=1e-11 Score=121.23 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=90.9
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 58 QNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINY----------ETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 58 qkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdy----------eeAi~~~~kALeldP~n~kAl~~rA 127 (776)
+.+.|++|+..|+++++++|.+ +.+|+++|.|++.++ ++ ++|+..|++||+++|++..+|+.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~----aea~~n~G~~l~~l~--~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLD----ADNLTRWGGVLLELS--QFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHhc--ccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456899999999999999998 999999999999997 65 5999999999999999999999999
Q ss_pred HHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 128 RAFDAIG-----------KYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 128 ~ay~aLG-----------r~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
.+|..+| ++++|+.+|++|++++|++..+...+..+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999885 89999999999999999998776666554
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.26 E-value=3.1e-11 Score=108.52 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+..++++|.+++..| +|++|+..+.+++.++|.++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.
T Consensus 8 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGR--KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3889999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhh
Q 004055 163 LRTALGPRQEAQQDLQS 179 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k 179 (776)
++..+|++++|+..+.+
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 86 CQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 99999999999998876
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.4e-10 Score=131.66 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCC----------HHHHHHHH
Q 004055 41 IFLKRAHELKEEGNKRFQNKDY-VGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPIN----------YETVIAEC 109 (776)
Q Consensus 41 ~~le~A~~LkeeGn~lfqkGdy-eeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gd----------yeeAi~~~ 109 (776)
..++.-.........+.+.|.| ++|+..|+++|.++|.+ ..+|++++.++..++ + |++++..+
T Consensus 23 ~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~----~taW~~R~~~l~~l~--~~~~~~~~~~~~~~eL~~~ 96 (567)
T 1dce_A 23 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF----ATLWNCRREVLQHLE--TEKSPEESAALVKAELGFL 96 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHhcc--cccchhhhhhhHHHHHHHH
Confidence 3344444455555566677766 46799999999999998 999999999999998 7 99999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHhh--CCCCC
Q 004055 110 TMALQVQPRFVRALLRRARAFDAIG--KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG-PRQEAQQDLQS--RPSPA 184 (776)
Q Consensus 110 ~kALeldP~n~kAl~~rA~ay~aLG--r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg-~~qeA~~~l~k--kl~P~ 184 (776)
+++|+.+|++..+|+.|+.++..++ ++++|+..|.+++++||.|..+|...+.++..++ .+++++.++.+ ..+|.
T Consensus 97 ~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 97 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999 7799999999999999999999999999999999 88889888877 57899
Q ss_pred CHHHHHHHHHHHHhC--------------CCccchhHHhhhhcCCCCCC
Q 004055 185 ALGASAVRGAPIAGL--------------GPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 185 ~~~a~~~lA~~l~~L--------------G~~eeArk~~KKa~~s~P~~ 219 (776)
+..++..++.++..+ +.+++|..+..++....|..
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999886 34566667777766555554
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.22 E-value=5.9e-11 Score=108.78 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------
Q 004055 82 DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR------- 154 (776)
Q Consensus 82 d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~------- 154 (776)
+.+.++.++|.+++..| +|++|+..|++||+++|+++.+|+.+|.||..+|++++|+.+|++++.++|++.
T Consensus 6 d~A~a~~~lG~~~~~~~--~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQK--DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 35788999999999999 999999999999999999999999999999999999999999999999999774
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 155 DALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 155 ~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.++..++.++..++++++|+..+.+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667777788888888888887766
No 143
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=1.5e-11 Score=128.75 Aligned_cols=168 Identities=17% Similarity=0.109 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHcCCCCH
Q 004055 45 RAHELKEEGNKRFQNKD--------------------YVGALEQYDNALRLTPKT--HPDRAVFHSNRAACLMQMKPINY 102 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGd--------------------yeeAle~Y~KALkLdP~~--~~d~A~ay~n~A~cy~~LG~gdy 102 (776)
.+..+...|..++..|+ |+.|+..|.+++.+.+.. ++..+.++.++|.+|..+| +|
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~ 203 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG--NF 203 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--BH
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc--CH
Confidence 46688999999999999 999999999999984332 1235778999999999999 99
Q ss_pred HHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCh
Q 004055 103 ETVIAECTMALQVQPRFV------RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGPR 170 (776)
Q Consensus 103 eeAi~~~~kALeldP~n~------kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~~ 170 (776)
++|+..+.+++.+.|... .+++.+|.+|..+|++++|+..|++++.+.|.. ..++..++.++...|++
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 999999999999866543 399999999999999999999999999998876 77888999999999999
Q ss_pred HHHHHHHhhC--C------CCCCHHHHHHHHHHHHhCCCccchhHHhhhhcC
Q 004055 171 QEAQQDLQSR--P------SPAALGASAVRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 171 qeA~~~l~kk--l------~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
++|...+.+. . .+....++..+|.++..+|++++|..+++++..
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988762 1 122256788899999999999999999999763
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.22 E-value=5.8e-11 Score=122.64 Aligned_cols=168 Identities=15% Similarity=0.022 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCh--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC--
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDR--AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF-- 119 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~--A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n-- 119 (776)
+....+...+..++..|+|++|+..|.+++...+..+... ...+..+|.++...+ +|++|+..+.+|+.+.+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhccccc
Confidence 4456677889999999999999999999999877652211 234556888888877 9999999999999975432
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHhhC------C-
Q 004055 120 ----VRALLRRARAFDAIGKYEMAMQDVQVLLGV-------EPNHRDALEIARRLRTALGPRQEAQQDLQSR------P- 181 (776)
Q Consensus 120 ----~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-------dP~N~~al~~la~ll~~lg~~qeA~~~l~kk------l- 181 (776)
..++..+|.+|..+|++++|+..|++++.+ .+....++.+++.++..+|++++|+..+.+. .
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999953 2233467889999999999999999988762 1
Q ss_pred -CCCCHHHHHHHHHHHHhCCC-ccchhHHhhhhc
Q 004055 182 -SPAALGASAVRGAPIAGLGP-CLPARPVGKKAG 213 (776)
Q Consensus 182 -~P~~~~a~~~lA~~l~~LG~-~eeArk~~KKa~ 213 (776)
.+.-+.++..+|.++..+|+ +++|..+++++.
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 13337789999999999995 599999999876
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.21 E-value=8.5e-11 Score=107.02 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
.++.+|.+++..| ++++|+..+.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++.
T Consensus 19 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLA--NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHhh--CCCCCCH
Q 004055 166 ALGPRQEAQQDLQS--RPSPAAL 186 (776)
Q Consensus 166 ~lg~~qeA~~~l~k--kl~P~~~ 186 (776)
.+|++++|+..+.+ ...|.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999877 4556543
No 146
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=1.3e-11 Score=131.01 Aligned_cols=167 Identities=22% Similarity=0.134 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------C
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK--THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV------Q 116 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~--~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------d 116 (776)
.+..+...|..++..|+|++|+..|.+++.+... +++..+.+++++|.+|..+| +|++|+..+.+++.+ .
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 162 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG--RFDEAAICCERHLTLARQLGDR 162 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhch
Confidence 3457889999999999999999999999998321 11234789999999999999 999999999999998 6
Q ss_pred CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCChHHH
Q 004055 117 PRFVRALLRRARAFDAIGK-----------------YEMAMQDVQVLLGVE------PNHRDALEIARRLRTALGPRQEA 173 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr-----------------~deAl~d~~kAL~Ld------P~N~~al~~la~ll~~lg~~qeA 173 (776)
|....+++.+|.+|..+|+ +++|+..|++++.+. |....++..++.++..+|++++|
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 242 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 6778899999999999999 999999999999874 33456888999999999999999
Q ss_pred HHHHhhC--CCC------CCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 174 QQDLQSR--PSP------AALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 174 ~~~l~kk--l~P------~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+..+.+. ..| .....+..+|.++..+|++++|..+++++.
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9988762 111 113377889999999999999999999875
No 147
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1e-11 Score=107.36 Aligned_cols=95 Identities=25% Similarity=0.390 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC-----
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF----- 119 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n----- 119 (776)
.+..+...|..++..|+|++|+..|++++.++|.+ +.+++++|.||+.+| +|++|+..|.+++.++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLG--EYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCccHHHH
Confidence 36678888888888888888888888888888886 788888888888888 8888888888888888888
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 120 -VRALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 120 -~kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
..+++.+|.++..+|+++.|+..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 88888888888888888777766543
No 148
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=2.7e-11 Score=121.95 Aligned_cols=167 Identities=13% Similarity=0.008 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCC--------------------H
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPIN--------------------Y 102 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gd--------------------y 102 (776)
.+..+...|..++..|+|++|+..|.+++.+.+... ...+.++.++|.+|..+| + +
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG--KSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC--cccccchhhhhhhhhhhHHHHH
Confidence 356677778888888888888888888888766432 123557888888888888 8 8
Q ss_pred HHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCh
Q 004055 103 ETVIAECTMALQV------QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR------DALEIARRLRTALGPR 170 (776)
Q Consensus 103 eeAi~~~~kALel------dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~------~al~~la~ll~~lg~~ 170 (776)
++|+..+.+++.+ .|....+++.+|.++..+|++++|+..|++++.+.|... .++..++.++...|++
T Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 8888888888776 334456788888888888888888888888888765432 2777888888888888
Q ss_pred HHHHHHHhhC--CCCC------CHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 171 QEAQQDLQSR--PSPA------ALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 171 qeA~~~l~kk--l~P~------~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
++|...+.+. ..|. ....+..+|.++..+|++++|..+++++.
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888877651 1111 14567778888888888888888888765
No 149
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.18 E-value=2.9e-10 Score=101.02 Aligned_cols=113 Identities=20% Similarity=0.146 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 004055 85 VFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV---RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALE 158 (776)
Q Consensus 85 ~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~---kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~ 158 (776)
..++++|.+++..| +|++|+..+.+++..+|++. .+++.+|.++..+|++++|+..|++++.++|++ +.++.
T Consensus 3 ~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNG--KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 34788999999999 99999999999999999998 899999999999999999999999999999999 89999
Q ss_pred HHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 159 IARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 159 ~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
.++.++..+|++++|+..+.+ ...|.+..+...+..+....
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 999999999999999999977 45688887766665544433
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.9e-10 Score=101.59 Aligned_cols=111 Identities=17% Similarity=0.099 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIA 160 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~l 160 (776)
+..++.+|.+++..| +|++|+..+.+++.++|++ ..+++.+|.+|..+|++++|+..|++++.++|++..++..+
T Consensus 28 ~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCG--DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 889999999999999 9999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHH
Q 004055 161 RRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPI 196 (776)
Q Consensus 161 a~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l 196 (776)
+.++..+|++++|+..+.+ ...|.+..++..++.+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999987 57788888887777554
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.17 E-value=1.2e-10 Score=99.44 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN--HRDALEIAR 161 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~--N~~al~~la 161 (776)
+.+++++|.+++..| ++++|+..+.+++.++|.+..+++.+|.++..+|++++|+..|++++.++|. +..++..++
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAG--NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 677899999999999 9999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHc-CChHHHHHHHhh
Q 004055 162 RLRTAL-GPRQEAQQDLQS 179 (776)
Q Consensus 162 ~ll~~l-g~~qeA~~~l~k 179 (776)
.++..+ |++++|+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 999999 999999888865
No 152
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.17 E-value=8.3e-10 Score=118.18 Aligned_cols=151 Identities=9% Similarity=-0.057 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHc---CCH
Q 004055 64 GALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAF----DAI---GKY 136 (776)
Q Consensus 64 eAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay----~aL---Gr~ 136 (776)
+|+..+.++|.++|.+ ..+++.++.++..++...+++++..+..+|..+|++..+++.|+.++ ..+ +++
T Consensus 51 ~aL~~t~~~L~~nP~~----~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 51 RALHITELGINELASH----YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHCTTC----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHCcHH----HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4555555555555544 44455555554444312455555555555555555555555555544 444 444
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH--HHHHHHhh--CCCCCCHHHHHHHHHHHHhCCC------ccchh
Q 004055 137 EMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQ--EAQQDLQS--RPSPAALGASAVRGAPIAGLGP------CLPAR 206 (776)
Q Consensus 137 deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~q--eA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~------~eeAr 206 (776)
++++..+.+++.++|.|..++...+.++..++.+. +++..+.+ ..+|.+-.++..++.++..+++ ++++.
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 55555555555555555555555555554444444 44444433 2344444455555544444444 44444
Q ss_pred HHhhhhcCCCCC
Q 004055 207 PVGKKAGAPAGG 218 (776)
Q Consensus 207 k~~KKa~~s~P~ 218 (776)
.+..++....|.
T Consensus 207 ~~~~~aI~~~p~ 218 (306)
T 3dra_A 207 NYVKDKIVKCPQ 218 (306)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHHhCCC
Confidence 444444444443
No 153
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=1.8e-10 Score=110.03 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLM-QMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~-~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
.+..+...|..++..|++++|+..|++++.+.| + +.++..++.+.+ ..+ ....|+..+.+++.++|+++.++
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~----~~~~~~~~~~~~~~~~--~~~~a~~~~~~al~~~P~~~~~~ 111 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D----NSYKSLIAKLELHQQA--AESPELKRLEQELAANPDNFELA 111 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C----HHHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHSTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C----hHHHHHHHHHHHHhhc--ccchHHHHHHHHHHhCCCCHHHH
Confidence 466789999999999999999999999999999 6 555555554433 323 44568999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNH--RDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N--~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+.+|.++..+|++++|+..|++++.++|++ ..++..++.++..+|+.++|...|.+
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 999999999999999999999999999986 66999999999999999999888764
No 154
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=1.7e-10 Score=132.82 Aligned_cols=155 Identities=13% Similarity=0.031 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 46 AHELKEEGNKRFQNKD----------YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 46 A~~LkeeGn~lfqkGd----------yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
...|..+|..+...++ |++|+..|+++|..+|.+ ..+|++++.++.+++.-++++++..|+++|++
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----YGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 4678889999998888 999999999999999998 99999999999999833559999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHhh-
Q 004055 116 QPRFVRALLRRARAFDAIG-KYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL--------------GPRQEAQQDLQS- 179 (776)
Q Consensus 116 dP~n~kAl~~rA~ay~aLG-r~deAl~d~~kAL~LdP~N~~al~~la~ll~~l--------------g~~qeA~~~l~k- 179 (776)
+|+|..||..|+.++..+| .++++++++.++++++|.|..++...+.++..+ +.+++++..+.+
T Consensus 139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999886 346778887766
Q ss_pred -CCCCCCHHHHHHHHHHHHhCCCccc
Q 004055 180 -RPSPAALGASAVRGAPIAGLGPCLP 204 (776)
Q Consensus 180 -kl~P~~~~a~~~lA~~l~~LG~~ee 204 (776)
...|.+..+|+.++.++...+++.+
T Consensus 219 i~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 219 FFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HhhCCCCccHHHHHHHHHhcCCCccc
Confidence 5689999999999999999998776
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.16 E-value=4.3e-10 Score=120.39 Aligned_cols=162 Identities=9% Similarity=-0.069 Sum_probs=145.0
Q ss_pred HHHHHHHHHHH----HHC---CCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcC
Q 004055 46 AHELKEEGNKR----FQN---KDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYE--TVIAECTMALQVQ 116 (776)
Q Consensus 46 A~~LkeeGn~l----fqk---GdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdye--eAi~~~~kALeld 116 (776)
...+..++..+ ... +++.+++..+.++|..+|.+ ..++++++.++..++ .++ +++..|.++|+.+
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn----y~aW~~R~~vl~~l~--~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN----HHVWSYRKWLVDTFD--LHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhc--ccChHHHHHHHHHHHHhC
Confidence 34567777777 666 89999999999999999998 999999999999999 888 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH-hh--CC---CCC
Q 004055 117 PRFVRALLRRARAFDAIGK------YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL-QS--RP---SPA 184 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr------~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l-~k--kl---~P~ 184 (776)
|+|..|+..|+.++..+++ +++++..+++++.++|+|..++..++.++..+|+...+...+ .+ .+ .|.
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999998 999999999999999999999999999999999866555433 33 23 378
Q ss_pred CHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 185 ALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 185 ~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
++.++..++.++...|++++|...+.+..
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 156
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.15 E-value=3.8e-10 Score=101.52 Aligned_cols=134 Identities=14% Similarity=0.157 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC--
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF-- 119 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n-- 119 (776)
..+..+...|..++..|+|++|+..|.+++.+.+... ...+.++.++|.+|..+| +|++|+..+.+++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCC
Confidence 5688999999999999999999999999999876432 234468999999999999 9999999999999986543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 120 ----VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 120 ----~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
..+++.+|.++..+|++++|+..+++++.+.+.. ..++..++.++..+|++++|...+.+
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6789999999999999999999999999874322 34566667777777777777666543
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=5.5e-10 Score=110.83 Aligned_cols=162 Identities=10% Similarity=-0.093 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK--PINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG--~gdyeeAi~~~~kALeldP~n~kA 122 (776)
.+..+...|..++..+++++|+..|+++++.. + +.+++++|.+|.. + +.++++|+..|.+|++ +.++.+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~----~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a 87 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D----GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSG 87 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C----HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHH
Confidence 35678999999999999999999999999863 3 7899999999987 4 1289999999999965 679999
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHhhCC-CCCCHHHHHH
Q 004055 123 LLRRARAFDA----IGKYEMAMQDVQVLLGVEP--NHRDALEIARRLRTA----LGPRQEAQQDLQSRP-SPAALGASAV 191 (776)
Q Consensus 123 l~~rA~ay~a----LGr~deAl~d~~kAL~LdP--~N~~al~~la~ll~~----lg~~qeA~~~l~kkl-~P~~~~a~~~ 191 (776)
++.+|.+|.. .+++++|+..|++++...| .++.++..++.++.. .+++.+|+.++.+.. .|.++.+.+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~ 167 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYW 167 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999988 8999999999999999998 469999999999999 789999999998832 2677889999
Q ss_pred HHHHHHhC-C-----CccchhHHhhhhcCC
Q 004055 192 RGAPIAGL-G-----PCLPARPVGKKAGAP 215 (776)
Q Consensus 192 lA~~l~~L-G-----~~eeArk~~KKa~~s 215 (776)
+|.+|... | ++.+|..+++++...
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999864 3 899999999997643
No 158
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=1.7e-10 Score=119.96 Aligned_cols=133 Identities=16% Similarity=0.013 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
...++.+|..++..| ++++|+..|++++.++|++..+++.+|.+|...|++++|+..|++++.++|++.......+..
T Consensus 117 ~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQES--NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 788999999999999 999999999999999999999999999999999999999999999999999777777777777
Q ss_pred HHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 164 RTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 164 l~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
+...++...|+..+.+ ...|+++.+++.+|.++...|++++|...+.+.....|.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 7788888888888876 578999999999999999999999999999998866665
No 159
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.12 E-value=4.4e-10 Score=99.47 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004055 64 GALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDV 143 (776)
Q Consensus 64 eAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~ 143 (776)
.|+..|.+++.++|.+ +.+++++|.+|+.+| +|++|+..|.+++.++|.+..+++.+|.+|..+|++++|+..|
T Consensus 3 ~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTDN----MLLRFTLGKTYAEHE--QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5899999999999987 899999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHcC
Q 004055 144 QVLLGVEPN--HRDALEIARRLRTALG 168 (776)
Q Consensus 144 ~kAL~LdP~--N~~al~~la~ll~~lg 168 (776)
++++.++|. +..+...+..++..++
T Consensus 77 ~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 77 ESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHhc
Confidence 999999984 4555555555555543
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.12 E-value=3.2e-10 Score=107.98 Aligned_cols=152 Identities=16% Similarity=0.046 Sum_probs=97.7
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHH
Q 004055 56 RFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ------VQPRFVRALLRRARA 129 (776)
Q Consensus 56 lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe------ldP~n~kAl~~rA~a 129 (776)
++..|+|++|...++.... +|. ..+.++.++|.+|..+| +|++|+..+.+++. ..|....+++.+|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPA---TASGARFMLGYVYAFMD--RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STT---THHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC-ChH---HHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4567777777774443332 332 24677777777777777 77777777777777 344456677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCChHHHHHHHhhCC----CCCC----HHHHHHHHH
Q 004055 130 FDAIGKYEMAMQDVQVLLGV---EPNH----RDALEIARRLRTALGPRQEAQQDLQSRP----SPAA----LGASAVRGA 194 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL~L---dP~N----~~al~~la~ll~~lg~~qeA~~~l~kkl----~P~~----~~a~~~lA~ 194 (776)
|..+|++++|+..|++++.+ .+++ ..++..++.++..+|++++|...+.+.+ ...+ ...+..+|.
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 77777777777777777777 3322 3456677777777777777777665511 1111 223466777
Q ss_pred HHHhCCCccchhHHhhhhc
Q 004055 195 PIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 195 ~l~~LG~~eeArk~~KKa~ 213 (776)
++..+|++++|..++.++.
T Consensus 156 ~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 7888888888877777754
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.11 E-value=4.7e-10 Score=98.17 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH-------RD 155 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N-------~~ 155 (776)
.+..++.+|.+++..| +|++|+..+.+++..+|.++.+++.+|.+|...|++++|+..|++++.++|++ ..
T Consensus 3 ~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKK--DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 4678999999999999 99999999999999999999999999999999999999999999999999987 89
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 156 ALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 156 al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
++..++.++..+|++++|...+.+ ...| ++.....++.++..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 999999999999999999999977 4456 577777777665543
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.11 E-value=4.5e-10 Score=109.81 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPR-------FVR-----ALLRRARAFDAIGKYEMAMQDVQVLLGV-- 149 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~-------n~k-----Al~~rA~ay~aLGr~deAl~d~~kAL~L-- 149 (776)
+..+.++|.+++.+| +|++|+..|++||+++|. +.. +|+++|.|+..+|+|++|+.+|+++|.+
T Consensus 11 a~~~~~~G~~l~~~g--~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAG--EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 677899999999999 999999999999999999 554 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCChHHHHHHHhh
Q 004055 150 -----EPNHRDAL----EIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 150 -----dP~N~~al----~~la~ll~~lg~~qeA~~~l~k 179 (776)
+|++..+| ++.+.++..+|++++|+..|.+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 99999998 8999999999999998888876
No 163
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.11 E-value=8.5e-10 Score=123.39 Aligned_cols=166 Identities=10% Similarity=-0.055 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-hCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 46 AHELKEEGNKRFQ-------NKDYV-------GALEQYDNALR-LTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECT 110 (776)
Q Consensus 46 A~~LkeeGn~lfq-------kGdye-------eAle~Y~KALk-LdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~ 110 (776)
+..+...|..+.. .|+++ +|+..|++|+. +.|.+ ..+++++|.++..+| ++++|...|.
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~----~~l~~~~~~~~~~~g--~~~~A~~~~~ 345 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADYEESRM--KYEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----HHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence 3456677777775 79987 99999999997 88987 899999999999999 9999999999
Q ss_pred HHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCChHHHHHHHhh--CCCCCCH
Q 004055 111 MALQVQPRFV-RALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL-RTALGPRQEAQQDLQS--RPSPAAL 186 (776)
Q Consensus 111 kALeldP~n~-kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l-l~~lg~~qeA~~~l~k--kl~P~~~ 186 (776)
+++.++|.++ .+|+.+|.++...|+++.|...|++++...|.+...+...+.+ +...|+.++|...|.+ ...|.++
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence 9999999985 6999999999999999999999999999999887776655554 3468999999999987 5669999
Q ss_pred HHHHHHHHHHHhCCCccchhHHhhhhcCCCC
Q 004055 187 GASAVRGAPIAGLGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 187 ~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P 217 (776)
..+..++.++..+|+++.|+..+.++....|
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 9999999999999999999999999876544
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.08 E-value=1.5e-10 Score=123.89 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFV-----------------RALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~-----------------kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
.+..+.++|.+++..| +|++|+..|.+|+.+.|.+. .+|+++|.||..+|+|++|+.+|++
T Consensus 178 ~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEE--KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSS--CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677899999999999 99999999999999999887 4999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHH-HHhCCCccchhHHhhhhcCCCCC
Q 004055 146 LLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAP-IAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 146 AL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~-l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
+|.++|++..+++.++.++..+|++++|+..|.+ .+.|.+..++..++.+ ....+....++..+++.....|.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999988 5779999998888887 44566778888888887766555
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=1.2e-09 Score=113.46 Aligned_cols=133 Identities=13% Similarity=0.009 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+..++++|.+++..| +|++|+..|.+|+.++|.+..+++.+|.+|..+|++++|+.+|++++.++|++..++..++.
T Consensus 3 ~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR--KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3788999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHhh--CCCCC-------------------------------CHHHHHHHHHHHHhCCCccchhHHh
Q 004055 163 LRTALGPRQEAQQDLQS--RPSPA-------------------------------ALGASAVRGAPIAGLGPCLPARPVG 209 (776)
Q Consensus 163 ll~~lg~~qeA~~~l~k--kl~P~-------------------------------~~~a~~~lA~~l~~LG~~eeArk~~ 209 (776)
++..+|++++|+..+.+ ...|. +......++.. ..|++++|...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~ 158 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEEC 158 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 99999999999998866 22232 22222222222 357778888888
Q ss_pred hhhcCCCCCC
Q 004055 210 KKAGAPAGGL 219 (776)
Q Consensus 210 KKa~~s~P~~ 219 (776)
+++....|++
T Consensus 159 ~~al~~~p~~ 168 (281)
T 2c2l_A 159 QRNHEGHEDD 168 (281)
T ss_dssp SGGGTTTSCH
T ss_pred Hhhhccccch
Confidence 8887777664
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.07 E-value=4e-10 Score=122.62 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQ----------------VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLL 147 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe----------------ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL 147 (776)
+..+.++|.+++..| +|++|+..|.+||+ ++|.+..+|+++|.||..+|++++|+.+|+++|
T Consensus 223 a~~~~~~g~~~~~~g--~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 567899999999999 99999999999999 888899999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHH
Q 004055 148 GVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPV 208 (776)
Q Consensus 148 ~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~ 208 (776)
+++|++..++..++.++..++++++|+..+.+ .+.|.+..++..++.++..++++.++++.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 67899999999999999999888877654
No 167
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=1.7e-09 Score=113.98 Aligned_cols=170 Identities=16% Similarity=0.023 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC-
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP-DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF- 119 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~-d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n- 119 (776)
..-.+..+...|..++..|++++|+..|++++...|...+ ....++.++|.+|...| +|++|+..+.+++.+.|..
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~ 87 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHD 87 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcC
Confidence 3455777889999999999999999999999999886532 23457899999999999 9999999999999986543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCC--
Q 004055 120 -----VRALLRRARAFDAIGKYEMAMQDVQVLLGVE--------PNHRDALEIARRLRTALGPRQEAQQDLQS--RPS-- 182 (776)
Q Consensus 120 -----~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld--------P~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~-- 182 (776)
..+++.+|.++...|++++|+..|++++.+. |....++..++.++...|++++|...+.+ ...
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 2457899999999999999999999999985 33456778899999999999999998876 111
Q ss_pred ---CCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 183 ---PAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 183 ---P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
+.....+..++.++...|++++|..++.++.
T Consensus 168 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 168 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234678889999999999999999999864
No 168
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.2e-10 Score=98.89 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDAL 157 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al 157 (776)
+..++++|.+++..| +|++|+..|.+++.++|.++.+++.+|.||..+|++++|+..|++++.++|++ ..++
T Consensus 4 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQG--LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 678999999999999 99999999999999999999999999999999999999999999999999999 6677
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 004055 158 EIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 158 ~~la~ll~~lg~~qeA~~~l 177 (776)
..++.++..+|+++.++..+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 77777776666555444433
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.06 E-value=9.8e-11 Score=131.52 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRL 163 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~l 163 (776)
+..++++|.+++..| +|++|+..|.+|++++|.+..+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+
T Consensus 6 a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEELKTQANDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HTTSSSSSSSTTTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455777888999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHH--HHhCCCccchhHHhhhh
Q 004055 164 RTALGPRQEAQQDLQS--RPSPAALGASAVRGAP--IAGLGPCLPARPVGKKA 212 (776)
Q Consensus 164 l~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~--l~~LG~~eeArk~~KKa 212 (776)
+..+|++++|+..+.+ ...|.+..++..++.+ +..+|++++|....++.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999987 5678888888888888 88889999999988753
No 170
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=5.1e-09 Score=108.07 Aligned_cols=133 Identities=9% Similarity=-0.015 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HcCCCC
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPINYETVIAECTMAL---QVQPRF 119 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kAL---eldP~n 119 (776)
....+...|..+...|+|++|+..|.+++.+.+.... ..+.+++++|.+|..+| +|++|+..|.+|+ +..|.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcCcc
Confidence 3444567888889999999999999999998765432 23678999999999999 9999999999999 556664
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHH-HHHHhh
Q 004055 120 V----RALLRRARAFDAIGKYEMAMQDVQVLLGVEPN------HRDALEIARRLRTALGPRQEA-QQDLQS 179 (776)
Q Consensus 120 ~----kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~------N~~al~~la~ll~~lg~~qeA-~~~l~k 179 (776)
. .+++.+|.+|..+|++++|+..|++++.+.+. -..++..++.++..+|++++| ...+.+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3 69999999999999999999999999998653 167899999999999999999 555654
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.05 E-value=2.8e-09 Score=115.46 Aligned_cols=170 Identities=12% Similarity=0.080 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHH---HHCCCHH-HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCC----------HHHHHHHH
Q 004055 44 KRAHELKEEGNKR---FQNKDYV-GALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPIN----------YETVIAEC 109 (776)
Q Consensus 44 e~A~~LkeeGn~l---fqkGdye-eAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gd----------yeeAi~~~ 109 (776)
++.+.|+..-..+ .+.|.|. +|+..+.++|.++|.+ ..+++.++.++..++ . +.+++..+
T Consensus 24 ~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~----ytaWn~Rr~iL~~l~--~~~~~~~~~~~l~~EL~~~ 97 (331)
T 3dss_A 24 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF----ATLWNCRREVLQHLE--TEKSPEESAALVKAELGFL 97 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHHhc--ccccchhhhHHHHHHHHHH
Confidence 3444454444443 4678777 7999999999999998 899999999999887 5 78999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHhh--CCCCC
Q 004055 110 TMALQVQPRFVRALLRRARAFDAIGK--YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP-RQEAQQDLQS--RPSPA 184 (776)
Q Consensus 110 ~kALeldP~n~kAl~~rA~ay~aLGr--~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~-~qeA~~~l~k--kl~P~ 184 (776)
+.+|..+|++..+|+.|+.++..+++ +++++..|.+++.++|.|..++...+.++..++. .++++..+.+ ..+|.
T Consensus 98 ~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 98 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999994 9999999999999999999999999999999998 5888888876 57899
Q ss_pred CHHHHHHHHHHHHhC--------------CCccchhHHhhhhcCCCCCC
Q 004055 185 ALGASAVRGAPIAGL--------------GPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 185 ~~~a~~~lA~~l~~L--------------G~~eeArk~~KKa~~s~P~~ 219 (776)
+..++..++.++..+ +.++++..+..++....|.+
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d 226 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 226 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 999999999998887 34566777777766555553
No 172
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=2.2e-09 Score=110.73 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-------
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPINYETVIAECTMALQV------- 115 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------- 115 (776)
.+..+...|..++..++|+.|+..|.+++.+.+.... ..+.++.++|.+|..+| +|++|+..+.+|+..
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccc
Confidence 3455667899999999999999999999998665432 23568999999999999 999999999999953
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC-hHHHHHHHhh
Q 004055 116 QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH------RDALEIARRLRTALGP-RQEAQQDLQS 179 (776)
Q Consensus 116 dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N------~~al~~la~ll~~lg~-~qeA~~~l~k 179 (776)
.+....+++.+|.+|..+|++++|+..+++++.+.+.. ..++..++.++..+|+ +++|...+.+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 23345689999999999999999999999999987655 7899999999999995 5999988764
No 173
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.04 E-value=2.4e-09 Score=89.24 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
.+.+++++|.++..+| +|++|+..|.+++.++|.+..+++.+|.++..+|++++|+..|++++.++|+++.++..++.
T Consensus 8 ~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3667888888888888 88888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHcC
Q 004055 163 LRTALG 168 (776)
Q Consensus 163 ll~~lg 168 (776)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.04 E-value=5.2e-09 Score=114.11 Aligned_cols=163 Identities=11% Similarity=-0.065 Sum_probs=144.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFD 131 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~ 131 (776)
....+......++|+..+.++|.++|.+ ..+++.++.++..++ ..+++++..+..+|..+|++..++..|+.++.
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~----ytaWn~R~~iL~~l~-~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAH----YTVWQYRFSLLTSLN-KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3334445556689999999999999998 899999999999998 23999999999999999999999999999999
Q ss_pred Hc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH--------HHHHHHhh--CCCCCCHHHHHHHHHHHHhC
Q 004055 132 AI-G-KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQ--------EAQQDLQS--RPSPAALGASAVRGAPIAGL 199 (776)
Q Consensus 132 aL-G-r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~q--------eA~~~l~k--kl~P~~~~a~~~lA~~l~~L 199 (776)
.+ + ++++++..+.++|.++|.|..++...+.++..++.+. +++..+.+ ..+|.+-.++..++.++..+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 98 8 9999999999999999999999999999999888777 78887766 57899999999999999999
Q ss_pred CC-------ccchhHHhhhhcCCCCCC
Q 004055 200 GP-------CLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 200 G~-------~eeArk~~KKa~~s~P~~ 219 (776)
+. ++++..+.+++....|..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCC
Confidence 97 578888888877666664
No 175
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=1e-09 Score=114.66 Aligned_cols=160 Identities=9% Similarity=-0.035 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC--
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF-- 119 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n-- 119 (776)
..+..+...|..+...|+|++|+..|++++.+.+... ...+.++.++|.+|.. | +|++|+..|++|+.+.|..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g--~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L--DLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHHHHhCCC
Confidence 3466788999999999999999999999999965421 1246789999999988 8 9999999999999997754
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCChHHHHHHHhh-CCCCCCHH-
Q 004055 120 ----VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR------DALEIARRLRTALGPRQEAQQDLQS-RPSPAALG- 187 (776)
Q Consensus 120 ----~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~------~al~~la~ll~~lg~~qeA~~~l~k-kl~P~~~~- 187 (776)
..++..+|.+|..+|++++|+..|++++.+.|.+. .++..++.++..+|++.+|+..+.+ ...|....
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~ 230 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTS
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCC
Confidence 67899999999999999999999999999977552 3677788888899999999999876 33453322
Q ss_pred --H--HHHHHHHHHhCCCccchhH
Q 004055 188 --A--SAVRGAPIAGLGPCLPARP 207 (776)
Q Consensus 188 --a--~~~lA~~l~~LG~~eeArk 207 (776)
. ...++.++ ..|+.+....
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2 22233333 5666555544
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.00 E-value=1.6e-09 Score=103.12 Aligned_cols=133 Identities=13% Similarity=-0.025 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CC--
Q 004055 45 RAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT--HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---QP-- 117 (776)
Q Consensus 45 ~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~--~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---dP-- 117 (776)
.+..+...|..++..|+|++|+..|.+++.+.... ++..+.+++++|.+|..+| +|++|+..+.+++.+ .+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG--NWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCcc
Confidence 47789999999999999999999999999964332 1235788999999999999 999999999999998 44
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 118 --RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEP--NHR----DALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 118 --~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP--~N~----~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
....+++.+|.++..+|++++|+..+++++.+.+ .++ .++..++.++...|++++|...+.+
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3356899999999999999999999999997743 232 3457899999999999999988865
No 177
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=7.9e-09 Score=108.87 Aligned_cols=169 Identities=13% Similarity=0.002 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ----- 116 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld----- 116 (776)
..+..+...|..++..|+|++|+..|.+++.+.|.... ....+++++|.++..+| +|++|+..+.+++.+.
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~ 128 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG--FLQTAWETQEKAFQLINEQHL 128 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhcc
Confidence 45667889999999999999999999999998775422 23456889999999999 9999999999999874
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHhhC----CCCC
Q 004055 117 ---PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH-----RDALEIARRLRTALGPRQEAQQDLQSR----PSPA 184 (776)
Q Consensus 117 ---P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N-----~~al~~la~ll~~lg~~qeA~~~l~kk----l~P~ 184 (776)
|....++..+|.+|...|++++|...+++++.+.|.. ..++..++.++...|++++|...+... ..+.
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 208 (373)
T 1hz4_A 129 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 208 (373)
T ss_dssp TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC
T ss_pred ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Confidence 3456788899999999999999999999999998753 467888999999999999999988761 2222
Q ss_pred C-HHHHH----HHHHHHHhCCCccchhHHhhhhcC
Q 004055 185 A-LGASA----VRGAPIAGLGPCLPARPVGKKAGA 214 (776)
Q Consensus 185 ~-~~a~~----~lA~~l~~LG~~eeArk~~KKa~~ 214 (776)
. ..... .++.++...|++++|..++.++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 209 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 2 22221 345568899999999999998764
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.00 E-value=4.9e-10 Score=100.09 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004055 101 NYETVIAECTMALQV---QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDL 177 (776)
Q Consensus 101 dyeeAi~~~~kALel---dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l 177 (776)
+|++|+..|.+++.+ +|.+..+++.+|.+|..+|++++|+..|+++++++|+++.++..++.++..+|++++|+..+
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh--CCCCCCHHHHHHHHHHHHhCCCccc
Q 004055 178 QS--RPSPAALGASAVRGAPIAGLGPCLP 204 (776)
Q Consensus 178 ~k--kl~P~~~~a~~~lA~~l~~LG~~ee 204 (776)
.+ ...|.++........+....+.+++
T Consensus 85 ~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 85 LKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 87 4568888776665555555555443
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=4.7e-09 Score=113.73 Aligned_cols=169 Identities=14% Similarity=0.016 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 46 AHELKEEGNKRFQNKD----------YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 46 A~~LkeeGn~lfqkGd----------yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
...+..++..+...+. +.+++.++..+|..+|.+ ..++++++.++..++...+++++..|.++|+.
T Consensus 64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~ 139 (331)
T 3dss_A 64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----YGTWHHRCWLLSRLPEPNWARELELCARFLEA 139 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence 5567777777766555 789999999999999998 99999999999999833499999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHhh-
Q 004055 116 QPRFVRALLRRARAFDAIGK-YEMAMQDVQVLLGVEPNHRDALEIARRLRTAL--------------GPRQEAQQDLQS- 179 (776)
Q Consensus 116 dP~n~kAl~~rA~ay~aLGr-~deAl~d~~kAL~LdP~N~~al~~la~ll~~l--------------g~~qeA~~~l~k- 179 (776)
+|+|..||..|+.++..+|. +++++.++.+++.++|.|..++...+.++..+ +.+++++..+..
T Consensus 140 dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 140 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999 69999999999999999999999999999887 346777877766
Q ss_pred -CCCCCCHHHHHHH-HHHHHhCC----------CccchhHHhhhhcCCCCC
Q 004055 180 -RPSPAALGASAVR-GAPIAGLG----------PCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 180 -kl~P~~~~a~~~l-A~~l~~LG----------~~eeArk~~KKa~~s~P~ 218 (776)
...|.+..++..+ +.+....| .++++....+......|.
T Consensus 220 i~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 220 FFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp HHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 5789999999655 44444444 345666666665544444
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1.9e-09 Score=114.44 Aligned_cols=171 Identities=13% Similarity=0.029 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-------------------------------------C-----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-------------------------------------P----- 81 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-------------------------------------~----- 81 (776)
+....++..|.-+ ..+++..|...|.+++.++|... |
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 4566777777776 68899999999999999998751 0
Q ss_pred ----------------ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 82 ----------------DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 82 ----------------d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
....++..+|.++..+| +|++|...+..++..+|.+. ++|.+|.+++..+++++|+..|+.
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g--~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQG--NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHT--CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01233344567788888 99999999999999999888 999999999999999999999998
Q ss_pred HHhhCCC-C-HHHHHHHHHHHHHcCChHHHHHHHhhC-CC---CC-CHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 146 LLGVEPN-H-RDALEIARRLRTALGPRQEAQQDLQSR-PS---PA-ALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 146 AL~LdP~-N-~~al~~la~ll~~lg~~qeA~~~l~kk-l~---P~-~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
++...++ . ..+++.++.++..+|++++|+..|.+. .. |. .+.+.+.+|.++..+|+.++|+..+.+.....|.
T Consensus 161 a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8776322 2 358999999999999999999999873 22 54 5678999999999999999999999998766555
No 181
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.99 E-value=6.6e-09 Score=86.53 Aligned_cols=85 Identities=26% Similarity=0.336 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
..+..+...|..++..|+|++|+..|.+++.+.|.+ +.+++++|.||..+| ++++|+..+.+++.++|.+..++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcCCCCHHHH
Confidence 346788999999999999999999999999999987 889999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 004055 124 LRRARAFDAIG 134 (776)
Q Consensus 124 ~~rA~ay~aLG 134 (776)
+.+|.++..+|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998765
No 182
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.97 E-value=1.1e-08 Score=113.62 Aligned_cols=158 Identities=14% Similarity=0.017 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 48 ELKEEGNKRFQNK---DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM--KPINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 48 ~LkeeGn~lfqkG---dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L--G~gdyeeAi~~~~kALeldP~n~kA 122 (776)
.+...|..+...| ++++|+..|++++...|.. +..++++|.+|... .++++++|+..|.++. |.++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~----a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT----AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 5678899999999 9999999999999999986 88889999999765 1239999999999998 999999
Q ss_pred HHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHhhCCCCCCHHHHHHHHH
Q 004055 123 LLRRARA-F--DAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG-----PRQEAQQDLQSRPSPAALGASAVRGA 194 (776)
Q Consensus 123 l~~rA~a-y--~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg-----~~qeA~~~l~kkl~P~~~~a~~~lA~ 194 (776)
++.+|.+ | ...+++++|+..|++++.. +++.++..++.++. .| ++.+|+.+|.+.. |.++.+.+.+|.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 9999999 4 5689999999999999865 58999999999998 55 8999999999977 999999999998
Q ss_pred HHHh----CCCccchhHHhhhhcCCC
Q 004055 195 PIAG----LGPCLPARPVGKKAGAPA 216 (776)
Q Consensus 195 ~l~~----LG~~eeArk~~KKa~~s~ 216 (776)
+|.. ..++.+|..+++++....
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 8887 448999999999987543
No 183
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=98.97 E-value=1.8e-09 Score=94.63 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=68.3
Q ss_pred ccceeEeeccceeEEec--cCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccc
Q 004055 291 WRPLKLVYDHDIRLGQM--PVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEAD 368 (776)
Q Consensus 291 ~~~vK~~~~~DiR~~~v--~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~ 368 (776)
..++||.|..|++++.| +.++++.+|..+|...|+. ..|+|||.|+|||.|+|+|+.|+..|+..+ ++
T Consensus 6 ~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L-~~~~ikY~DEenD~v~i~Sq~E~eEAlkva---------~k 75 (87)
T 2bkf_A 6 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL-NTIQIKYLDEENEEVSINSQGEYEEALKMA---------VK 75 (87)
T ss_dssp CEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC-SSEEEEEECTTSCEEEECSHHHHHHHHHHH---------HH
T ss_pred eEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC-CceEEEEEcCCCCEEEEecHHHHHHHHHHh---------cc
Confidence 45799999999999887 6699999999999999995 599999999999999999999999999876 11
Q ss_pred cCCCCCcEEEEEEe
Q 004055 369 KSDSVGMLRLHIVD 382 (776)
Q Consensus 369 ~~~~~g~~rL~v~e 382 (776)
....++++|.+
T Consensus 76 ---~~n~L~m~v~~ 86 (87)
T 2bkf_A 76 ---QGNQLQMQVHE 86 (87)
T ss_dssp ---TTTEEEEEEEE
T ss_pred ---CCCEEEEEEec
Confidence 23457877764
No 184
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.96 E-value=1e-08 Score=114.61 Aligned_cols=167 Identities=8% Similarity=-0.080 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
...+...|..+...|++++|...|++++.+.|.+ ...+|.+.+.++.++| ++++|+..|.+|++..|.....++.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~--~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID---PTLVYIQYMKFARRAE--GIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC---chHHHHHHHHHHHHhc--CHHHHHHHHHHHHhccCCchHHHHH
Confidence 4567788888999999999999999999998876 1358999999999999 9999999999999999998888887
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCH----HHHHHHHHHHHh
Q 004055 126 RARA-FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAAL----GASAVRGAPIAG 198 (776)
Q Consensus 126 rA~a-y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~----~a~~~lA~~l~~ 198 (776)
.+.+ +...|+++.|...|+++++.+|+++.++..++.++..+|+..+|...|.+ ...|.++ ..+.........
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 7766 45699999999999999999999999999999999999999999999987 3334333 356566777788
Q ss_pred CCCccchhHHhhhhcCCCC
Q 004055 199 LGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 199 LG~~eeArk~~KKa~~s~P 217 (776)
.|+.+.+..+.+++...-|
T Consensus 476 ~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SSCHHHHHHHHHHHHHHTH
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 9999999999888764443
No 185
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.96 E-value=2.5e-08 Score=110.37 Aligned_cols=158 Identities=10% Similarity=-0.021 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcC
Q 004055 45 RAHELKEEGNKRFQ----NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQ----MKPINYETVIAECTMALQVQ 116 (776)
Q Consensus 45 ~A~~LkeeGn~lfq----kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~----LG~gdyeeAi~~~~kALeld 116 (776)
.+..+...|..++. .++++.|+..|+++++. .+ +.+++++|.+|.. .+ ++++|+..|.+|++.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~- 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GY----TPAEYVLGLRYMNGEGVPQ--DYAQAVIWYKKAALK- 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC----HHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHC-
Confidence 35678999999999 99999999999999987 33 7899999999999 77 999999999999885
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHhhCCCCCCHHH
Q 004055 117 PRFVRALLRRARAFDA----IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA----LGPRQEAQQDLQSRPSPAALGA 188 (776)
Q Consensus 117 P~n~kAl~~rA~ay~a----LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~----lg~~qeA~~~l~kkl~P~~~~a 188 (776)
.++.+++.+|.+|.. .+++++|+..|++++.. +++.++..++.++.. .+++.+|+..+.+.....++.+
T Consensus 109 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a 185 (490)
T 2xm6_A 109 -GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWS 185 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 589999999999999 89999999999999775 689999999999998 7899999999988555678999
Q ss_pred HHHHHHHHHh----CCCccchhHHhhhhcC
Q 004055 189 SAVRGAPIAG----LGPCLPARPVGKKAGA 214 (776)
Q Consensus 189 ~~~lA~~l~~----LG~~eeArk~~KKa~~ 214 (776)
+..+|.+|.. .+++++|..+++++..
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 9999999998 8999999999999763
No 186
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.95 E-value=1e-09 Score=94.02 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=59.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAV-FHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~-ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
...|..++..|+|++|+..|++++.++|.+ +. +++++|.||+.+| ++++|+..|.+++.++|++..+++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~--- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLG--DWQKALNNYQSAIELNPDSPALQAR--- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTHHHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHH---
Confidence 456666677777777777777777776665 55 6677777777776 7777777777777777776666533
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N 153 (776)
+.+.+++..|++++.++|++
T Consensus 75 -----~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -----KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -----HHHHHHHHHHCCTTHHHHCC
T ss_pred -----HHHHHHHHHHHHHhccCccc
Confidence 45555666666666666654
No 187
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.94 E-value=4.4e-08 Score=108.39 Aligned_cols=157 Identities=9% Similarity=-0.081 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCC
Q 004055 46 AHELKEEGNKRFQ----NKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQ----MKPINYETVIAECTMALQVQP 117 (776)
Q Consensus 46 A~~LkeeGn~lfq----kGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~----LG~gdyeeAi~~~~kALeldP 117 (776)
+..+...|..++. .+++++|+..|.+++... + +.+++++|.+|.. .+ ++++|+..|.+|+..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~-- 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L----PQAQQNLGVMYHEGNGVKV--DKAESVKWFRLAAEQ-- 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHC--
Confidence 4567888999999 999999999999999863 3 7889999999998 66 999999999999876
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHhhCCCCCCHHHH
Q 004055 118 RFVRALLRRARAFDA----IGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTA----LGPRQEAQQDLQSRPSPAALGAS 189 (776)
Q Consensus 118 ~n~kAl~~rA~ay~a----LGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~----lg~~qeA~~~l~kkl~P~~~~a~ 189 (776)
+++.+++.+|.+|.. .+++++|+..|++++.. +++.++..++.++.. .+++++|+..+.+.....++.+.
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 222 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQ 222 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHH
Confidence 589999999999998 89999999999999886 689999999999998 89999999999886666788999
Q ss_pred HHHHHHHHh----CCCccchhHHhhhhcC
Q 004055 190 AVRGAPIAG----LGPCLPARPVGKKAGA 214 (776)
Q Consensus 190 ~~lA~~l~~----LG~~eeArk~~KKa~~ 214 (776)
..+|.++.. .+++++|..+++++..
T Consensus 223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999999997 8999999999999864
No 188
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=98.90 E-value=1.7e-09 Score=96.92 Aligned_cols=80 Identities=19% Similarity=0.337 Sum_probs=69.1
Q ss_pred cccceeEeeccceeEEec--cCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccc
Q 004055 290 RWRPLKLVYDHDIRLGQM--PVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEA 367 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v--~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~ 367 (776)
...++||.|..|+++|.| +.++++.+|..+|...|+. ..|+|||.|+|||.|+|+|+.|+..|+..+ +
T Consensus 13 ~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L-~~~~IkY~DEenD~V~i~Sq~E~eEAlkva---------~ 82 (101)
T 1wj6_A 13 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL-NTIQIKYLDEENEEVSINSQGEYEEALKMA---------V 82 (101)
T ss_dssp SCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC-SSBCCEEECTTSCEECCCSHHHHHHHHHHH---------H
T ss_pred ccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC-CceEEEEecCCCCEEEEecHHHHHHHHHHh---------c
Confidence 346899999999999887 6799999999999999995 599999999999999999999999999876 1
Q ss_pred ccCCCCCcEEEEEEe
Q 004055 368 DKSDSVGMLRLHIVD 382 (776)
Q Consensus 368 ~~~~~~g~~rL~v~e 382 (776)
+ ....|+++|.+
T Consensus 83 k---~~n~L~m~V~~ 94 (101)
T 1wj6_A 83 K---QGNQLQMQVHE 94 (101)
T ss_dssp H---HTSEEEEECCB
T ss_pred c---CCCEEEEEEee
Confidence 1 13457888766
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=2.4e-08 Score=108.87 Aligned_cols=153 Identities=10% Similarity=-0.020 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 46 AHELKEEGNKRFQNK-DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 46 A~~LkeeGn~lfqkG-dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
...+..+|..+...+ ++++++..+.++|..+|.+ ..++++|+.|+..+...++++++..|.++|+.+|+|..|+.
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS----YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 345788899999999 6999999999999999998 99999999999998312789999999999999999999999
Q ss_pred HHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHhh--CCCCCCHH
Q 004055 125 RRARAFDAIGKYE--------MAMQDVQVLLGVEPNHRDALEIARRLRTALGP-------RQEAQQDLQS--RPSPAALG 187 (776)
Q Consensus 125 ~rA~ay~aLGr~d--------eAl~d~~kAL~LdP~N~~al~~la~ll~~lg~-------~qeA~~~l~k--kl~P~~~~ 187 (776)
.|+.++..+|+++ +++..+.+++.++|.|..++...+.++..++. +++++..+.+ ...|.+..
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999988 99999999999999999999999999999886 5778877766 57899999
Q ss_pred HHHHHHHHHHhCCCc
Q 004055 188 ASAVRGAPIAGLGPC 202 (776)
Q Consensus 188 a~~~lA~~l~~LG~~ 202 (776)
++..+..++...|+.
T Consensus 244 aW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCC
Confidence 998877777666654
No 190
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=1.5e-08 Score=100.39 Aligned_cols=139 Identities=15% Similarity=-0.004 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC----CHHHH
Q 004055 64 GALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG----KYEMA 139 (776)
Q Consensus 64 eAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG----r~deA 139 (776)
+|+..|+++... .+ +.+++++|.+|...+ ++++|+..|.+|++. .++.+++.+|.+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~--g~----~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GD----RRAQYYLADTWVSSG--DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHT--TC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHC--CC----HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 588899999987 33 889999999999998 999999999999876 689999999999988 7 99999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHhhCCCCCC----HHHHHHHHHHHHh----CCCccchhH
Q 004055 140 MQDVQVLLGVEPNHRDALEIARRLRTA----LGPRQEAQQDLQSRPSPAA----LGASAVRGAPIAG----LGPCLPARP 207 (776)
Q Consensus 140 l~d~~kAL~LdP~N~~al~~la~ll~~----lg~~qeA~~~l~kkl~P~~----~~a~~~lA~~l~~----LG~~eeArk 207 (776)
+..|++++ ++.++.++..++.++.. .+++.+|+.++.+...-.. +.++..+|.+|.. .+++.+|..
T Consensus 73 ~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999995 56899999999999987 7899999999988443333 8999999999999 889999999
Q ss_pred HhhhhcCC
Q 004055 208 VGKKAGAP 215 (776)
Q Consensus 208 ~~KKa~~s 215 (776)
+++++...
T Consensus 151 ~~~~A~~~ 158 (212)
T 3rjv_A 151 YFKGSSSL 158 (212)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998754
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.84 E-value=7.6e-09 Score=92.90 Aligned_cols=129 Identities=15% Similarity=0.046 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH--- 153 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N--- 153 (776)
.+.++.++|.+|...| +|++|+..+.+++.+.+.. ..+++.+|.+|..+|++++|+..|++++.+.+..
T Consensus 8 ~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 5778999999999999 9999999999999986542 2589999999999999999999999999987653
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHhhC------C--CCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 154 ---RDALEIARRLRTALGPRQEAQQDLQSR------P--SPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 154 ---~~al~~la~ll~~lg~~qeA~~~l~kk------l--~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
..++..++.++...|++++|...+.+. . .+.....+..+|.++..+|++++|..++.++.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 567888999999999999999988762 1 12234567889999999999999999998865
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.84 E-value=1.4e-08 Score=88.86 Aligned_cols=86 Identities=10% Similarity=0.158 Sum_probs=73.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C
Q 004055 76 TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPN--H 153 (776)
Q Consensus 76 dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~--N 153 (776)
+|++ +.+++++|.+|+.+| +|++|+..|.++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|. +
T Consensus 3 ~p~~----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPED----PFTRYALAQEHLKHD--NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 4655 889999999999999 9999999999999999999999999999999999999999999999999874 4
Q ss_pred HHHHHHHHHHHHHc
Q 004055 154 RDALEIARRLRTAL 167 (776)
Q Consensus 154 ~~al~~la~ll~~l 167 (776)
......+..++...
T Consensus 77 ~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 77 QKDLSELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 44444555544433
No 193
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=98.83 E-value=5.1e-09 Score=91.55 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=67.3
Q ss_pred ccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCC-CCceEEEEecC-CCCeeeecChHHHHHHHHhcccccccCcccc
Q 004055 291 WRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPS-SKSVLIKYKDN-DGDLVTITCTAELRLAESASDSLMTKEPEAD 368 (776)
Q Consensus 291 ~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~-~~~~~iKYkDe-DGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~ 368 (776)
...|||||. |+..|.||..++|.+|+++|++|++. ....++.|||+ .|.+| |.+++||+.|...+
T Consensus 5 ~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~----------- 71 (83)
T 1oey_A 5 AYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-PLSEDSMKDAWGQV----------- 71 (83)
T ss_dssp CEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-ECCTTTHHHHHTTC-----------
T ss_pred cEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee-ccChHHHHHHHHhc-----------
Confidence 358999997 99999999999999999999999997 45599999995 56888 99999999999877
Q ss_pred cCCCCCcEEEEEEe
Q 004055 369 KSDSVGMLRLHIVD 382 (776)
Q Consensus 369 ~~~~~g~~rL~v~e 382 (776)
..+.++|||.+
T Consensus 72 ---~n~~LtL~C~~ 82 (83)
T 1oey_A 72 ---KNYCLTLWCEN 82 (83)
T ss_dssp ---BTTEEEEEECC
T ss_pred ---cCCcEEEEEec
Confidence 56789999974
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.75 E-value=1.4e-08 Score=99.16 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=84.8
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 96 QMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKY----------EMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 96 ~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~----------deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
+++ .|++|+..+.++++++|+++.+|+++|.++..++++ ++|+..|+++|+++|++..++++++.++.
T Consensus 14 r~~--~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RIL--LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHh--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 445 799999999999999999999999999999999886 59999999999999999999999999999
Q ss_pred HcC-----------ChHHHHHHHhh--CCCCCCHHHHHHH
Q 004055 166 ALG-----------PRQEAQQDLQS--RPSPAALGASAVR 192 (776)
Q Consensus 166 ~lg-----------~~qeA~~~l~k--kl~P~~~~a~~~l 192 (776)
.+| ++++|+..|.+ .++|.+..++..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 875 79999999987 5788887655443
No 195
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.75 E-value=6e-08 Score=107.55 Aligned_cols=156 Identities=13% Similarity=-0.058 Sum_probs=133.1
Q ss_pred HHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCCCHHHHH
Q 004055 50 KEEGNKRFQN----KDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLM-QMKPINYETVIAECTMALQVQPRFVRALL 124 (776)
Q Consensus 50 keeGn~lfqk----GdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~-~LG~gdyeeAi~~~~kALeldP~n~kAl~ 124 (776)
...|..+... +++++|+..|++++ |.+ +.+++++|.+|+ ..+.+++++|+..|.+|++. .++.+++
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~ 287 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGY----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAEL 287 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 6677777655 79999999999998 665 789999999944 22244999999999999975 4999999
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004055 125 RRARAFDAIG-----KYEMAMQDVQVLLGVEPNHRDALEIARRLRTA----LGPRQEAQQDLQSRPSPAALGASAVRGAP 195 (776)
Q Consensus 125 ~rA~ay~aLG-----r~deAl~d~~kAL~LdP~N~~al~~la~ll~~----lg~~qeA~~~l~kkl~P~~~~a~~~lA~~ 195 (776)
.+|.+|. .| ++++|+..|+++. |.++.++..++.++.. ..++.+|..++.+...+.++.+.+.+|.+
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 9999998 66 9999999999999 9999999999998887 34899999999987777888999999999
Q ss_pred HHh----CCCccchhHHhhhhcCCCCC
Q 004055 196 IAG----LGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 196 l~~----LG~~eeArk~~KKa~~s~P~ 218 (776)
|.. ..++..|..+++++....++
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 885 45889999999998866554
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.75 E-value=6e-08 Score=82.92 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQVQPRFVR-ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDAL 157 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k-Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al 157 (776)
.+++|.+++..| +|++|+..|.+++..+|.+.. +++.+|.+|..+|++++|+..|++++.++|++..++
T Consensus 3 ~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQG--DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHT--CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 367899999999 999999999999999999999 999999999999999999999999999999999887
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.74 E-value=5.1e-08 Score=110.67 Aligned_cols=136 Identities=12% Similarity=0.044 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-
Q 004055 41 IFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLT----PKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV- 115 (776)
Q Consensus 41 ~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLd----P~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel- 115 (776)
..++.+..+.+.+..+..+|+|++|+..|+++|.+. ..+||+.+..+.|+|.+|..+| +|++|+..+.++|.+
T Consensus 304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~ 381 (490)
T 3n71_A 304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ--AYEEASHYARRMVDGY 381 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence 345667778888999999999999999999999864 3457888999999999999999 999999999999976
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH---HHHHHHHHHcCChHHHHHHHh
Q 004055 116 ----QPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGV-----EPNHRDAL---EIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 116 ----dP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-----dP~N~~al---~~la~ll~~lg~~qeA~~~l~ 178 (776)
.|++ ...|.++|.+|..+|++++|+..|++||++ -|+++.+. ..++.++..++.+++|...|.
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 568999999999999999999999999975 56776554 455666666677777766554
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=5.8e-08 Score=102.99 Aligned_cols=139 Identities=13% Similarity=0.022 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC-C-HHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR-F-VRAL 123 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~-n-~kAl 123 (776)
-+.....+..|...|+|++|...|..++...|.. . .++.+|.++++.+ +|++|+..+..++...+. + ..++
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~----~-~~~~~a~l~~~~~--r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEH----L-VAWMKAVVYGAAE--RWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH----H-HHHHHHHHHHHTT--CHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch----H-HHHHHHHHHHHcC--CHHHHHHHHHHhhccCCcccHHHHH
Confidence 4566778999999999999999999999888764 5 8999999999999 999999999988775322 2 4589
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVE--PN-HRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVR 192 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~Ld--P~-N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~l 192 (776)
+.+|.++..+|++++|+..|++++.-. |. ...+++.++.++..+|+.++|...|.+ ...|. ..+...+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 999999999999999999999999655 66 678999999999999999999999987 56777 6655444
No 199
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=98.66 E-value=6.1e-08 Score=86.74 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=59.2
Q ss_pred ccceeEEecc----CCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCCCCC
Q 004055 299 DHDIRLGQMP----VNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSDSVG 374 (776)
Q Consensus 299 ~~DiR~~~v~----~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g 374 (776)
+.+||-|.|. ..-+|.+|+..||+.|+ ...+.|+|+|.|||||+|.|++|+.+++..+ +-...++ ..=
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~-~~DIaLNYrD~eGDLIrilddeDv~lmi~~s-----r~~~s~k--~~F 88 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLVRLLSDEDVALMVRQA-----RGLPSQK--RLF 88 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC-CSSEEEEEECTTSCEEECCSHHHHHHHHHHC-----CCCCCTT--CBC
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhc-ccceeeeeecCCCCEEEEcchHHHHHHHHHh-----hcCcccc--ccc
Confidence 4567777763 34489999999999999 7799999999999999999999999999887 2111111 133
Q ss_pred cEEEEEEec
Q 004055 375 MLRLHIVDV 383 (776)
Q Consensus 375 ~~rL~v~e~ 383 (776)
+-+|||+--
T Consensus 89 PWeLhvT~~ 97 (107)
T 1oey_J 89 PWKLHITQK 97 (107)
T ss_dssp SSCEEEEET
T ss_pred ceeEEEeec
Confidence 567778753
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.1e-07 Score=101.64 Aligned_cols=164 Identities=8% Similarity=0.009 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-------------ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP-------------DRAVFHSNRAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~-------------d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
...++|..+++.|+|.+|+..|.++++..|.... ....++.++|.+|..+| +|++|+..+.+++.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~--~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG--AKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
Confidence 3567888899999999999999999999987531 12356899999999999 99999999999998
Q ss_pred cCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHhh---
Q 004055 115 VQPRFVR------ALLRRARAFDAIGKYEMAMQDVQVLLGVEPN------HRDALEIARRLRTALGPRQEAQQDLQS--- 179 (776)
Q Consensus 115 ldP~n~k------Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~------N~~al~~la~ll~~lg~~qeA~~~l~k--- 179 (776)
..+...+ ++..++.++...|+++.|+..+++++.+.+. -..++..++.++...|++.+|...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 8665433 3456788888889999999999999987442 357888999999999999999988765
Q ss_pred ---C--CCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 180 ---R--PSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 180 ---k--l~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
. ..|.....+...++++..+|++..|+.+++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1 234456678889999999999999999999875
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.60 E-value=2e-07 Score=82.19 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 104 TVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 104 eAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.|+..|.+++..+|.++.+++.+|.+|...|++++|+..|++++.++|++..++..++.++..+|++++|+..+.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999876
No 202
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.59 E-value=6e-07 Score=96.42 Aligned_cols=165 Identities=11% Similarity=-0.106 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC------CHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR------FVR 121 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~------n~k 121 (776)
.+...|.+++..|++++|+..|.++|...|. .+...++..++.||+.+| +.+.|...+.+..+.+|+ ...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~--~~~lea~~l~vqi~L~~~--r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEA--EGTTELLLLAIEVALLNN--NVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS--TTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--cCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCccccccchHHH
Confidence 4568899999999999999999999998872 124788999999999999 999999999999999983 333
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CC----------CCCCHH
Q 004055 122 ALLRRARAFDAIG--KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RP----------SPAALG 187 (776)
Q Consensus 122 Al~~rA~ay~aLG--r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl----------~P~~~~ 187 (776)
.++.-|.+....| ++..|+..|+.+....|+.......+. ++..+|++++|...+.. +. +|.++.
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 4444455566667 999999999999888887333223333 88899999999998864 22 488999
Q ss_pred HHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 188 ASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 188 a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
++.++..+...+|+ +|..+..+.....|.+
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 99888888888997 8889988887777775
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.50 E-value=5.1e-07 Score=78.81 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC--CHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR--FVRAL 123 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~--n~kAl 123 (776)
+..+...|..++..|+|++|+..|+++++++|.+ +.+|+++|.||..+| ++++|+..+.+++.+.|. +..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLD--RTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhhcCCchhHH
Confidence 5688999999999999999999999999999997 789999999999999 999999999999998764 44554
Q ss_pred HHHHHHHHHc
Q 004055 124 LRRARAFDAI 133 (776)
Q Consensus 124 ~~rA~ay~aL 133 (776)
..+..++...
T Consensus 81 ~~l~~~l~~~ 90 (100)
T 3ma5_A 81 SELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5555444443
No 204
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.1e-06 Score=93.72 Aligned_cols=170 Identities=10% Similarity=-0.016 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP--DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ--- 116 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~--d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld--- 116 (776)
.-.....+...|..++..|+|++|+..|.+++.+.+.... ....++.+++.++...| +++.|+..|..++...
T Consensus 51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD--SLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS--CHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHh
Confidence 3455677899999999999999999999999998776421 12345667777777777 9999999999998763
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHhhC-------
Q 004055 117 ---PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGV------EPNHRDALEIARRLRTALGPRQEAQQDLQSR------- 180 (776)
Q Consensus 117 ---P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L------dP~N~~al~~la~ll~~lg~~qeA~~~l~kk------- 180 (776)
+....++..+|.+|...|+|.+|+..+++++.. .|....++..++.++..+|++.+|...+.+.
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 334789999999999999999999999999876 3344678889999999999999999988652
Q ss_pred CCCCC--HHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 181 PSPAA--LGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 181 l~P~~--~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
..|.. ...+...|.++...++|..|..++..+.
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22222 2345667889999999999999988764
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=1.8e-06 Score=80.37 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCC
Q 004055 60 KDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDA----IGK 135 (776)
Q Consensus 60 GdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~a----LGr 135 (776)
+++++|+..|+++.+..+.. +. +|.+|...+ .+++|+..+.+|.+. .++.+++.+|.+|.. .++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~----a~----lg~~y~~g~--~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF----GC----LSLVSNSQI--NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT----HH----HHHHTCTTS--CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHcCCCHh----hh----HHHHHHcCC--CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc
Confidence 47889999999999987543 32 888988887 899999999999987 689999999999998 899
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHhhCCCCCCHHHHHH
Q 004055 136 YEMAMQDVQVLLGVEPNHRDALEIARRLRTA----LGPRQEAQQDLQSRPSPAALGASAV 191 (776)
Q Consensus 136 ~deAl~d~~kAL~LdP~N~~al~~la~ll~~----lg~~qeA~~~l~kkl~P~~~~a~~~ 191 (776)
+++|+..|+++.+. .++.+...++.++.. .+++.+|+.++.+...-.++.+...
T Consensus 77 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~ 134 (138)
T 1klx_A 77 LRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGI 134 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999887 789999999999998 7889999998877433344544443
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.43 E-value=2e-06 Score=94.47 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC---CCC--HHHHHH-HHH--HHHH
Q 004055 46 AHELKEEGNKRFQNK---DYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK---PIN--YETVIA-ECT--MALQ 114 (776)
Q Consensus 46 A~~LkeeGn~lfqkG---dyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG---~gd--yeeAi~-~~~--kALe 114 (776)
|..++.+|..++.++ ++.+|+.+|++||+++|++ +.+|..++.||..+. +.. ...++. .+. .++.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~----a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF----TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 667888888887765 4588999999999999998 999999999997542 001 111111 111 2346
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 115 VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 115 ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
++|.++.+|..+|.++...|++++|+..+++++.++| +..++..++.++...|+.++|...+.+ .++|.....
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 6899999999999999989999999999999999997 477888999999999999999999987 677866543
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.43 E-value=1.8e-06 Score=96.64 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL----TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV-- 115 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL----dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel-- 115 (776)
....+....+.+......|+|++|+..|+++|.+ ...+||+.+..+.|+|.+|..+| +|++|+..|.++|.+
T Consensus 294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~ 371 (433)
T 3qww_A 294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ--DWEGALKYGQKIIKPYS 371 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHH
Confidence 3445566677777777789999999999999986 34457888999999999999999 999999999999976
Q ss_pred ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q 004055 116 ---QPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGV-----EPNHRDALEIAR 161 (776)
Q Consensus 116 ---dP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-----dP~N~~al~~la 161 (776)
.|++ ...|+++|.+|..+|++++|+..|++|+++ -|+++.+.....
T Consensus 372 ~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3444 568999999999999999999999999986 578887765444
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.41 E-value=1.7e-06 Score=76.86 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT---HPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~---~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kA 122 (776)
+...+..|..+|..|+|..|+..|++|++..+.. ....+.++.++|.||.++| +++.|+..+.+|+.++|++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g--~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG--DLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHH
Confidence 5677889999999999999999999999875332 2346788888888888888 8888888888888888888888
Q ss_pred HHHHH
Q 004055 123 LLRRA 127 (776)
Q Consensus 123 l~~rA 127 (776)
+.+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 77776
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=3.2e-06 Score=82.00 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHH
Q 004055 62 YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMK-PINYETVIAECTMALQVQ-P-RFVRALLRRARAFDAIGKYEM 138 (776)
Q Consensus 62 yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeld-P-~n~kAl~~rA~ay~aLGr~de 138 (776)
...+...|.+.+...|.+ ..+.+++|.|+.+.. +.++.+++..+...++.+ | ++.+++|.+|.+|+++|+|+.
T Consensus 14 l~~~~~~y~~e~~~~~~~----~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVS----KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccCCCc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 346778888888877765 899999999999976 335669999999999999 7 678999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 139 AMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 139 Al~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
|+++++++|+++|+|..+......+..++
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988877766543
No 210
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.35 E-value=3.6e-06 Score=104.89 Aligned_cols=143 Identities=10% Similarity=0.023 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRR 126 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~r 126 (776)
..|...|..+...|+|++|+..|.+| ++ +..|.++|.|+.++| +|++|+.++..|++..+. +.+...+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD----~say~eVa~~~~~lG--kyEEAIeyL~mArk~~~e-~~Idt~L 1173 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DD----PSSYMEVVQAANTSG--NWEELVKYLQMARKKARE-SYVETEL 1173 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----CC----hHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhccc-ccccHHH
Confidence 34555555555555555555555443 22 445555555555555 555555555555555422 2222235
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchh
Q 004055 127 ARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPAR 206 (776)
Q Consensus 127 A~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeAr 206 (776)
|.+|.+++++++ +..|. +..|...+..++..+...|++++|...|.+ +..+..++.+|..+|+++.|.
T Consensus 1174 afaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k------A~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN------VSNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHh------hhHHHHHHHHHHHhCCHHHHH
Confidence 555555555552 33331 222334445567777777777777777754 346666777777777777777
Q ss_pred HHhhhhc
Q 004055 207 PVGKKAG 213 (776)
Q Consensus 207 k~~KKa~ 213 (776)
...+++.
T Consensus 1242 EaarKA~ 1248 (1630)
T 1xi4_A 1242 DGARKAN 1248 (1630)
T ss_pred HHHHHhC
Confidence 7777764
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.35 E-value=2.3e-06 Score=95.33 Aligned_cols=116 Identities=9% Similarity=0.064 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDNALRL----TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--- 115 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL----dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--- 115 (776)
...++.+...-..+..+|+|++|+..|+++|.+ .+.+|++.+..+.|+|.+|..+| +|++|+..|.++|.+
T Consensus 284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g--~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG--LLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhHHH
Confidence 345667777788889999999999999999976 44567788999999999999999 999999999999976
Q ss_pred --CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHH
Q 004055 116 --QPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGV-----EPNHRDALEIA 160 (776)
Q Consensus 116 --dP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-----dP~N~~al~~l 160 (776)
.|++ ...|+++|.+|..+|++++|+..|++|+++ -|+++.+...+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3444 567999999999999999999999999975 57777665543
No 212
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=98.35 E-value=7.9e-07 Score=77.52 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=58.8
Q ss_pred ccccccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecC-CCCeeeecChHHHHHHHHh
Q 004055 287 VPVRWRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDN-DGDLVTITCTAELRLAESA 356 (776)
Q Consensus 287 ~~~~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDe-DGDlVTi~s~dDL~~A~~~ 356 (776)
|...+..||+.|.+||..+.||.+|+|.+|.++|+++.....-.++-|+|+ .|+ -|.||+||..|+.-
T Consensus 8 pq~~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde~~g~--~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 8 SGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFDGSGE--EIKTDSQVSNIIQA 76 (85)
T ss_dssp CCCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSSSCCS--CCCSHHHHHHHHHT
T ss_pred CccCceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCCCCCC--cccCHHHHHHHHHh
Confidence 334556899999999999999999999999999999999866677777774 677 99999999999953
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.31 E-value=3.4e-06 Score=74.44 Aligned_cols=73 Identities=21% Similarity=0.116 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 004055 84 AVFHSNRAACLMQMK-PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA 156 (776)
Q Consensus 84 A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a 156 (776)
+.+++.+|.+++..+ ....++|...+.+||.++|+++.+++.+|.+++..|+|++|+..+++++..+|.++..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 899999999998776 1127999999999999999999999999999999999999999999999999986443
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.23 E-value=9.9e-06 Score=71.89 Aligned_cols=80 Identities=18% Similarity=0.043 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQ-------PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA 156 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-------P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a 156 (776)
+.-.+.+|..++..+ +|..|+..+..|+... +.....+..+|.||+.+|+++.|+..+++++.++|++..+
T Consensus 5 a~dc~~lG~~~~~~~--~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEA--DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcc--chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 556789999999999 9999999999999863 3467899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 004055 157 LEIARRLRT 165 (776)
Q Consensus 157 l~~la~ll~ 165 (776)
+.++..+..
T Consensus 83 ~~n~~~~~~ 91 (104)
T 2v5f_A 83 NGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 888774433
No 215
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.22 E-value=6.4e-06 Score=88.48 Aligned_cols=142 Identities=8% Similarity=-0.033 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 004055 65 ALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP--RFVRALLRRARAFDAIGKYEMAMQD 142 (776)
Q Consensus 65 Ale~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP--~n~kAl~~rA~ay~aLGr~deAl~d 142 (776)
|+..|++.+...+.. ...+..+|.++...| ++++|+..|.+.|..+| .+..++..++.+|..+|+.+.|...
T Consensus 85 a~~~l~~l~~~~~~~----~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDKQNS----PYELYLLATAQAILG--DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTSCCC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCC----cHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 788888888765443 556679999999999 99999999999999997 8999999999999999999999999
Q ss_pred HHHHHhhCCC----CHHHHHHHH--HHHHHcC--ChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 143 VQVLLGVEPN----HRDALEIAR--RLRTALG--PRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 143 ~~kAL~LdP~----N~~al~~la--~ll~~lg--~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
+++..+.+|+ +..++..+. .+....| ++++|...|+. ...|.......++. ++..+|++++|+..+++.
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 9999999993 333444444 4465556 89999988877 33344222233333 899999999999998864
Q ss_pred c
Q 004055 213 G 213 (776)
Q Consensus 213 ~ 213 (776)
.
T Consensus 238 ~ 238 (310)
T 3mv2_B 238 L 238 (310)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.19 E-value=1.6e-05 Score=99.22 Aligned_cols=151 Identities=11% Similarity=0.000 Sum_probs=117.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C-----------------CCChHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPK-T-----------------HPDRAVFHSNRAACLMQMKPINYETVIAECTM 111 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~-~-----------------~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~k 111 (776)
.+.|..+...|.|++|...|+++-...-. + ..+.+.+|+++|.++...| ++.+|+..|.+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G--~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKG--MVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CHHHHHHHHHh
Confidence 44588888888888888777775321110 0 0234678999999999999 99999999977
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCCCCCCHHHHHH
Q 004055 112 ALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRPSPAALGASAV 191 (776)
Q Consensus 112 ALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~~~a~~~ 191 (776)
| +++.+|+..|.++..+|+|++|+++|..+.+.+++. .+...++.++.++++++. ...+.. .| +...+..
T Consensus 1131 A-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee-le~fI~--~~-n~ad~~~ 1200 (1630)
T 1xi4_A 1131 A-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE-LEEFIN--GP-NNAHIQQ 1200 (1630)
T ss_pred c-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH-HHHHHh--CC-CHHHHHH
Confidence 6 899999999999999999999999999999988553 233358888888888774 444432 23 4456667
Q ss_pred HHHHHHhCCCccchhHHhhhh
Q 004055 192 RGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 192 lA~~l~~LG~~eeArk~~KKa 212 (776)
+|.++...|+|++|..++.++
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh
Confidence 999999999999999999995
No 217
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.16 E-value=4.3e-06 Score=93.87 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQP---------- 117 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP---------- 117 (776)
.+...|+.++..|.|++|+.+|.++ . .|..+|.|+.++| +|++|+..+.+|. +|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----~-------n~~~LA~~L~~Lg--~yq~AVea~~KA~--~~~~Wk~v~~aC 187 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----S-------NFGRLASTLVHLG--EYQAAVDGARKAN--STRTWKEVCFAC 187 (449)
T ss_dssp -------------CTTTHHHHHHHT-----T-------CHHHHHHHHHTTT--CHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----h-------hHHHHHHHHHHhc--cHHHHHHHHHHcC--CchhHHHHHHHH
Confidence 7888899999999999999999876 2 2778899999998 9999999888882 33
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CChHHHHHHHh
Q 004055 118 -----------------RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTAL--GPRQEAQQDLQ 178 (776)
Q Consensus 118 -----------------~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~l--g~~qeA~~~l~ 178 (776)
.++.-+..+..+|...|++++|+..++++|.+++.+..+++.++.++.+. ++..+.+..|.
T Consensus 188 v~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 12222333446788999999999999999999999999999999888865 45666667666
Q ss_pred hCCC--C-----CCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 179 SRPS--P-----AALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 179 kkl~--P-----~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
.+.+ | ..+..|.-+..+|...++++.|....-.
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 5543 4 4566677788888899999988776554
No 218
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=2.6e-05 Score=72.45 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=86.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQ----MKPINYETVIAECTMALQVQPRFVRALLRRA 127 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~----LG~gdyeeAi~~~~kALeldP~n~kAl~~rA 127 (776)
.|..++..+.++.|+..|+++.+. .+ +.+++++|.+|.. .+ ++.+|+..+.+|.+. .++.+++.+|
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~----~~a~~~Lg~~y~~G~g~~~--d~~~A~~~~~~Aa~~--g~~~a~~~Lg 100 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NS----GNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL--NDQDGCLILG 100 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CC----HHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence 788888888999999999999998 33 7899999999998 66 999999999999987 6899999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 128 RAFDA----IGKYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 128 ~ay~a----LGr~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
.+|.. .+++++|+..|+++.++ .++.+...++
T Consensus 101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 101 YKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999 89999999999999988 4566655544
No 219
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=97.99 E-value=4.2e-05 Score=68.39 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=69.8
Q ss_pred cccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 290 RWRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
...|||+-|+.+.|++++|..++|.+|..++...|+ ..+-|.|.| ..=+|.|++++||+-|++.-|-.
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG--q~ldL~y~n-~EllIpl~sQeDLDkaIellDrs--------- 74 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG--QSMDLHYTN-NELVIPLTTQDDLDKAVELLDRS--------- 74 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS--SCEEEEECS-SSSCEECCSHHHHHHHHHHHHHC---------
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC--CeeeEEEec-ceEEEeccCHHHHHHHHHHHccC---------
Confidence 557999999999999999999999999999999999 489999997 66899999999999999775322
Q ss_pred CCCCCcEEEEEEe
Q 004055 370 SDSVGMLRLHIVD 382 (776)
Q Consensus 370 ~~~~g~~rL~v~e 382 (776)
..+..+||+++.
T Consensus 75 -s~~kSLrIlL~~ 86 (103)
T 2cu1_A 75 -IHMKSLKILLVI 86 (103)
T ss_dssp -SSCCSEEEEEEE
T ss_pred -CcccceEEEEec
Confidence 457788987775
No 220
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.98 E-value=2e-05 Score=89.46 Aligned_cols=103 Identities=7% Similarity=-0.116 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRL----TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---- 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL----dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---- 115 (776)
..+..+...|..|..+|+|++|+.+|+++|.+ .+.+||+.+..++|+|.+|..+| +|++|+..|.+||.+
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G--~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG--HIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999985 56778999999999999999999 999999999999976
Q ss_pred -CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004055 116 -QPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 116 -dP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~ 148 (776)
.|++ ...+-.++.++..++.|++|...|.++.+
T Consensus 427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 45677889999999999999999988754
No 221
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.93 E-value=2.1e-05 Score=88.29 Aligned_cols=156 Identities=10% Similarity=-0.065 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC------------------------CChHHHHHHHHHHHHHcCCCC
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH------------------------PDRAVFHSNRAACLMQMKPIN 101 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~------------------------~d~A~ay~n~A~cy~~LG~gd 101 (776)
...+...+..+...|+|++|+.+|+.+++..+... |. ...+.++|.++...| .
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~~g--~ 137 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDEK--M 137 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTCC-------------------C
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHHcC--C
Confidence 34566667777778888888887777776432210 11 236777888888887 8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhCC
Q 004055 102 YETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSRP 181 (776)
Q Consensus 102 yeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kkl 181 (776)
|++|+..|..+ ..|.++|.|+..+|+|++|++.|+++ +++.++.....+....|++..|...... +
T Consensus 138 yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L 203 (449)
T 1b89_A 138 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-I 203 (449)
T ss_dssp TTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-T
T ss_pred HHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-H
Confidence 88888888766 46788899999999999999999988 5788888888888889999888665543 2
Q ss_pred CCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 182 SPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 182 ~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
. .++.-...+..+|...|++++|..+++++....+..
T Consensus 204 ~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 204 V-VHADELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred H-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 2 344445557788999999999999999998666553
No 222
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=97.85 E-value=3.3e-05 Score=68.02 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=58.9
Q ss_pred cccceeEeeccceeEEec-cCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHh
Q 004055 290 RWRPLKLVYDHDIRLGQM-PVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESA 356 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v-~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~ 356 (776)
--+|+|.--+.|+-|.+- |+.++|+|+.+.|++..|....-...|.|||||.||+-||+||+--++.
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~TAFeYEDE~gDRITVRSDeE~kAMlsy 82 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSY 82 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCCSEEEEECTTSCEEEECSHHHHHHHHHH
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccceeeeeeeccccCCeeEEcchHHHHHHHHH
Confidence 457889888899999986 6999999999999999999999999999999999999999999876643
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.83 E-value=0.00012 Score=68.87 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCH
Q 004055 62 YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYET---VIAECTMALQVQ-P-RFVRALLRRARAFDAIGKY 136 (776)
Q Consensus 62 yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyee---Ai~~~~kALeld-P-~n~kAl~~rA~ay~aLGr~ 136 (776)
...+...|.+.+...+.+ ..+.|++|.|+.... +... +|..+...+..+ | ..-.++|.+|..++++|+|
T Consensus 17 l~~~~~~y~~e~~~~~~s----~~~~F~yAw~Lv~S~--~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVS----KSTQFEYAWCLVRTR--YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHSCCC----HHHHHHHHHHHTTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccCCCc----HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 456778888888877655 889999999999987 5555 899999888877 5 5678999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004055 137 EMAMQDVQVLLGVEPNHRDALEIARRLRTAL 167 (776)
Q Consensus 137 deAl~d~~kAL~LdP~N~~al~~la~ll~~l 167 (776)
+.|+++++.+|+++|+|..+..+...+..++
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988877766543
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.80 E-value=0.00012 Score=64.37 Aligned_cols=73 Identities=16% Similarity=0.058 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHH
Q 004055 116 QPRFVRALLRRARAFDAIGK---YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGA 188 (776)
Q Consensus 116 dP~n~kAl~~rA~ay~aLGr---~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a 188 (776)
+|.++..++.+|.+++..++ .++|...++++|+++|+|+.++..++.++...|++++|+..+.+ ...|.++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 68999999999999987766 79999999999999999999999999999999999999999987 455654443
No 225
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.73 E-value=0.00031 Score=82.84 Aligned_cols=163 Identities=6% Similarity=-0.086 Sum_probs=114.5
Q ss_pred HHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----------C
Q 004055 49 LKEEGNKRFQNKDYVGAL-EQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV-----------Q 116 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAl-e~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel-----------d 116 (776)
|...+..+...|+.++|+ ..|.+|+...|.+ ..+++..+.+....| +++.|...|.+++.. .
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~--~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNT--KIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 444455555667777786 8888888888876 677777777777777 888888888888764 2
Q ss_pred CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcC-ChHHHHHHHhh--CC
Q 004055 117 PR-----------FVRALLRRARAFDAIGKYEMAMQDVQVLLGV-EPNHRDALEIARRLRTALG-PRQEAQQDLQS--RP 181 (776)
Q Consensus 117 P~-----------n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-dP~N~~al~~la~ll~~lg-~~qeA~~~l~k--kl 181 (776)
|. +..+|...+.+....|..+.|...|.+|++. .+....++...+.+....+ +.+.|...|.. +.
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 43 3456777777777778888888888888877 3344555555555555544 36777777765 33
Q ss_pred CCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCC
Q 004055 182 SPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 182 ~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P 217 (776)
.|..+..+...+......|+.+.||.++.++....|
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 567777776777777778888888888888775444
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.63 E-value=0.00027 Score=77.65 Aligned_cols=146 Identities=14% Similarity=-0.009 Sum_probs=111.5
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-------HHHHH-
Q 004055 71 NALRLTPKTHPDRAVFHSNRAACLMQMK-PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKY-------EMAMQ- 141 (776)
Q Consensus 71 KALkLdP~~~~d~A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~-------deAl~- 141 (776)
++....|.+. .+.-++.+|..++..+ +..+.+|+..+.+|++++|+++.+|-.++.||..+..+ -.++.
T Consensus 185 r~~~~~p~~~--~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 185 TLQKILPHRG--ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHSCSSG--GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhccCCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 4455566542 3555677887777654 22568999999999999999999999999998643211 11111
Q ss_pred HHH--HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCC
Q 004055 142 DVQ--VLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS--RPSPAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAG 217 (776)
Q Consensus 142 d~~--kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k--kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P 217 (776)
.+. .++.++|.++.++..++.++...|++++|+..+.+ .++| +..++..+|.++...|++++|...+.++...+|
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 222 23467899999999999999889999999999988 4566 467788999999999999999999999887777
Q ss_pred CC
Q 004055 218 GL 219 (776)
Q Consensus 218 ~~ 219 (776)
..
T Consensus 342 ~~ 343 (372)
T 3ly7_A 342 GA 343 (372)
T ss_dssp SH
T ss_pred Cc
Confidence 64
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.55 E-value=0.0002 Score=76.39 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHc-CC
Q 004055 62 YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQM----KPINYETVIAECTMALQVQPRF-VRALLRRARAFDAI-GK 135 (776)
Q Consensus 62 yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~L----G~gdyeeAi~~~~kALeldP~n-~kAl~~rA~ay~aL-Gr 135 (776)
...|...++++|+++|+. ....+|..+|..|.++ + |+.++|...|++||+++|+. ..+++..|..|+.. |+
T Consensus 179 l~~A~a~lerAleLDP~~--~~GsA~~~LG~lY~~vPp~~g-Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY--QEGAVWNVLTKFYAAAPESFG-GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH--HHHHHHHHHHHHHHHSCTTTT-CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhCCCc--ccCHHHHHHHHHHHhCCCccC-CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 467889999999999983 1266899999999996 2 39999999999999999974 99999999999884 99
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 004055 136 YEMAMQDVQVLLGVEPNH 153 (776)
Q Consensus 136 ~deAl~d~~kAL~LdP~N 153 (776)
+++|.+.+++++..+|..
T Consensus 256 ~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 256 RAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999999988873
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.48 E-value=0.00032 Score=68.00 Aligned_cols=80 Identities=15% Similarity=0.021 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 46 AHELKEEGNKRFQNK---DYVGALEQYDNALRLT-PKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 46 A~~LkeeGn~lfqkG---dyeeAle~Y~KALkLd-P~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
.+..++.|..|.+.+ ++.+|+..++..++.+ |.. ...++|++|..|++++ +|++|+.+|+++|+.+|+|..
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl~--~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRLK--EYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHH
Confidence 467888899999988 8889999999999998 622 3789999999999999 999999999999999999999
Q ss_pred HHHHHHHHH
Q 004055 122 ALLRRARAF 130 (776)
Q Consensus 122 Al~~rA~ay 130 (776)
|...+-.+-
T Consensus 107 A~~Lk~~ie 115 (152)
T 1pc2_A 107 AKELERLID 115 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766554
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.42 E-value=0.00052 Score=73.17 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCChHHH
Q 004055 103 ETVIAECTMALQVQPR--FVRALLRRARAFDAI-----GKYEMAMQDVQVLLGVEPNH-RDALEIARRLRTA-LGPRQEA 173 (776)
Q Consensus 103 eeAi~~~~kALeldP~--n~kAl~~rA~ay~aL-----Gr~deAl~d~~kAL~LdP~N-~~al~~la~ll~~-lg~~qeA 173 (776)
..|...+.+|+++||+ +..+|..+|.+|..+ |+.+.|...|+++|+++|+. ...++.++..+.. .++++.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444445555555554 233455555554443 45555555555555555532 4444444444444 2444444
Q ss_pred HHHHhh
Q 004055 174 QQDLQS 179 (776)
Q Consensus 174 ~~~l~k 179 (776)
...+.+
T Consensus 260 ~~~L~k 265 (301)
T 3u64_A 260 DEALDR 265 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 230
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=97.29 E-value=0.0016 Score=56.97 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=69.5
Q ss_pred cccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 290 RWRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
...|||+-|..+-|.|++|.-+.|.+|..+|...|+ ..+-|.|-. ..=+|.+.+++||+-|++.-|..
T Consensus 3 ~dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afG--q~ldl~y~n-nEL~iPL~~Q~DLDkAvelLDrs--------- 70 (94)
T 2jrh_A 3 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG--QPLDLHYMN-NELSILLKNQDDLDKAIDILDRS--------- 70 (94)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHC--SSEEEEEEC-SSCEEECCSHHHHHHHHHHHHHS---------
T ss_pred CceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEec-ceeEEeccCHHHHHHHHHHhccC---------
Confidence 456899999999999999999999999999999998 678999995 67899999999999999876322
Q ss_pred CCCCCcEEEEEEe
Q 004055 370 SDSVGMLRLHIVD 382 (776)
Q Consensus 370 ~~~~g~~rL~v~e 382 (776)
..+..+||.++.
T Consensus 71 -~~mkSLRIlL~~ 82 (94)
T 2jrh_A 71 -SSMKSLRILLLS 82 (94)
T ss_dssp -TTTTEEEEEEEE
T ss_pred -ccccceEEEEEc
Confidence 457788988875
No 231
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.26 E-value=0.0029 Score=74.56 Aligned_cols=169 Identities=7% Similarity=-0.091 Sum_probs=132.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------CCCC-------CChHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLT-----------PKTH-------PDRAVFHSNRAACLMQMKPINYETVIAECT 110 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLd-----------P~~~-------~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~ 110 (776)
+...+......|+++.|...|++++... |.+. .....+|...+.+..+.+ +.+.|...+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~--~l~~AR~vf~ 458 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ--GLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 4456666778899999999999999863 4210 012456777777777788 9999999999
Q ss_pred HHHHc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhhC--CCC---
Q 004055 111 MALQV-QPRFVRALLRRARAFDAIGK-YEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQSR--PSP--- 183 (776)
Q Consensus 111 kALel-dP~n~kAl~~rA~ay~aLGr-~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~kk--l~P--- 183 (776)
+|+.. .+.....|...|.+...+++ ++.|...|+++|+..|+++..+..+.......|+...|...|++. ..|
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 99998 55567888888887777765 999999999999999999999988888888899999999999872 333
Q ss_pred CCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 184 AALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 184 ~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
.....+......-...|+.+.++++.++....-|.+
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 233455555666777999999999999987666654
No 232
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.21 E-value=0.0016 Score=63.88 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-----PDRAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-----~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
-.+++....++..+.|+.|+..+..++.+..+++ ...+.+++.+|..++..+ +|..|...|.+||..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~--eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK--EYRNAVSKYTMALQQ 92 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHH
Confidence 3688899999999999999999999888864332 134568899999999999 999999999999876
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.20 E-value=0.00069 Score=75.40 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRL----TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---- 115 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL----dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---- 115 (776)
..+..+...|..|..+|+|++|+.+|+++|.+ .+.+||+.+..++|+|..|..+| +|++|+..+.+|+.+
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g--~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQG--MFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHh
Confidence 56888999999999999999999999999975 67788999999999999999999 999999999999976
Q ss_pred -CCCCH---HHHHHHHHHHHH
Q 004055 116 -QPRFV---RALLRRARAFDA 132 (776)
Q Consensus 116 -dP~n~---kAl~~rA~ay~a 132 (776)
.|+++ ..+..++.|...
T Consensus 405 lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp TCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHH
Confidence 55554 445556665543
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.12 E-value=0.0019 Score=61.27 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMK-PINYETVIAECTMALQVQP-RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 84 A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP-~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
+...++.|.|+.+.. +.+...+|..+...+..+| ..-..+|.+|..++++|+|+.|.++++.+|+++|+|..+..+..
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 788999999999986 1145589999999999898 45789999999999999999999999999999999999988887
Q ss_pred HHHHHc
Q 004055 162 RLRTAL 167 (776)
Q Consensus 162 ~ll~~l 167 (776)
.+..++
T Consensus 120 ~Ie~ki 125 (134)
T 3o48_A 120 MVEDKI 125 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 235
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.0012 Score=73.72 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHH
Q 004055 100 INYETVIAECTMALQV-----QPRF---VRALLRRARAFDAIGKYEMAMQDVQVLLGV-----EPNHR---DALEIARRL 163 (776)
Q Consensus 100 gdyeeAi~~~~kALel-----dP~n---~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-----dP~N~---~al~~la~l 163 (776)
|+|++|+..|.++|.+ .|++ ...+.++|.+|..+|+|++|+..|+++|.+ -|+++ ..+.+++.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3999999999999985 4555 467899999999999999999999999976 35554 557789999
Q ss_pred HHHcCChHHHHHHHhh-------CCCCCCHHHHHH
Q 004055 164 RTALGPRQEAQQDLQS-------RPSPAALGASAV 191 (776)
Q Consensus 164 l~~lg~~qeA~~~l~k-------kl~P~~~~a~~~ 191 (776)
+..+|++++|...+.+ ...|+++...-+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 9999999999988876 367877765443
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.08 E-value=0.0025 Score=61.13 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMK-PINYETVIAECTMALQVQP-RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIAR 161 (776)
Q Consensus 84 A~ay~n~A~cy~~LG-~gdyeeAi~~~~kALeldP-~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la 161 (776)
....|+.|.|+.... +.+..++|..+...+..+| ..-..+|.+|..++++|+|..|.++++.+|+++|+|..+..+..
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 788999999999986 2244578999999999888 45689999999999999999999999999999999999988877
Q ss_pred HHHHHc
Q 004055 162 RLRTAL 167 (776)
Q Consensus 162 ~ll~~l 167 (776)
.+..++
T Consensus 119 ~Ie~~i 124 (144)
T 1y8m_A 119 MVEDKI 124 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 237
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=97.07 E-value=0.003 Score=56.63 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=68.7
Q ss_pred cccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 290 RWRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
...|||+-|..+-|.|++|.-+.|.+|..+|...|+ ..+-|.|-. ..=+|.+.+++||+-|++.-|..
T Consensus 30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afG--q~ldl~y~n-nEL~IPL~~Q~DLDkAvelLDrs--------- 97 (111)
T 2c60_A 30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG--QPLDLHYMN-NELSILLKNQDDLDKAIDILDRS--------- 97 (111)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHS--SCCEEEEEC-SSCEEECCSHHHHHHHHHHHHHC---------
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEec-ceEEEecccHHHHHHHHHHhccC---------
Confidence 567999999999999999999999999999999998 678899995 67899999999999999876322
Q ss_pred CCCCCcEEEEEEe
Q 004055 370 SDSVGMLRLHIVD 382 (776)
Q Consensus 370 ~~~~g~~rL~v~e 382 (776)
..+..+||.++.
T Consensus 98 -~~mkSLRIlL~~ 109 (111)
T 2c60_A 98 -SSMKSLRILLLS 109 (111)
T ss_dssp -SSCCSEEEEEEC
T ss_pred -ccccceEEEEec
Confidence 456778887763
No 238
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=97.07 E-value=0.0029 Score=56.09 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=68.9
Q ss_pred cccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhcccccccCccccc
Q 004055 290 RWRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADK 369 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~ 369 (776)
...|||+-|..+-|.|++|.-+.|.+|..+|...|+ ..+-|.|-. ..=+|.+.+++||+-|++..|..
T Consensus 19 ~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afG--q~ldl~y~n-nEL~iPL~~Q~DLDkAvelLDrs--------- 86 (100)
T 2npt_B 19 NDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG--QSMDLHYTN-NELVIPLTTQDDLDKAVELLDRS--------- 86 (100)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHT--SCEEEEEEE-TTEEEECCCHHHHHHHHHHHHHC---------
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEec-ceeEEecccHHHHHHHHHHhccC---------
Confidence 557999999999999999999999999999999998 678899995 66789999999999999876322
Q ss_pred CCCCCcEEEEEEe
Q 004055 370 SDSVGMLRLHIVD 382 (776)
Q Consensus 370 ~~~~g~~rL~v~e 382 (776)
..+..+||.++.
T Consensus 87 -~~~kSLrIlL~~ 98 (100)
T 2npt_B 87 -IHMKSLKILLVI 98 (100)
T ss_dssp -SSCCSEEEEEEE
T ss_pred -ccccceEEEEec
Confidence 456778887764
No 239
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.48 E-value=0.086 Score=59.33 Aligned_cols=161 Identities=7% Similarity=-0.153 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC------------------------------------hHHHHHHH
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPD------------------------------------RAVFHSNR 90 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d------------------------------------~A~ay~n~ 90 (776)
..+...+..+...|+.+.|...|.+|+.. |.+... ...+|...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 44666777788899999999999999999 876210 00112222
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004055 91 AACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIG-KYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP 169 (776)
Q Consensus 91 A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLG-r~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~ 169 (776)
+....+.+ +.+.|...+.+| ...+.....|...|.....++ +.+.|...|+.+++..|+++..+..+......+|+
T Consensus 293 ~~~~~r~~--~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 293 LNYVLKKR--GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHH--CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 22333455 688888899988 433345667777777776666 59999999999999999988877777777778899
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 170 RQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 170 ~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
...|...+.+.. .....+......-...|+.+.++...+++.
T Consensus 370 ~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 370 EENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888887642 345555555555566788888888766654
No 240
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.40 E-value=0.17 Score=57.07 Aligned_cols=159 Identities=13% Similarity=-0.069 Sum_probs=120.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCC-C
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRL--TPKTHPDRAVFHSNRAACLMQMK-------PINYETVIAECTMALQVQP-R 118 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkL--dP~~~~d~A~ay~n~A~cy~~LG-------~gdyeeAi~~~~kALeldP-~ 118 (776)
+...-+.+.+.|++++|+..|++.... .|+ ...|..+-.++...+ .+.++.|...+.+-....- -
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 344457788999999999999998875 343 444554444444332 1247889998888766532 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHhh----CCCCCCHHHHHHHH
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGVE-PNHRDALEIARRLRTALGPRQEAQQDLQS----RPSPAALGASAVRG 193 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld-P~N~~al~~la~ll~~lg~~qeA~~~l~k----kl~P~~~~a~~~lA 193 (776)
+...|..+-.+|.+.|++++|+..|+...... +-|...+..+-..+.+.|+.++|...+.. -..| +...+..+-
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li 182 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALL 182 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHH
Confidence 67888999999999999999999999987652 23677788888889999999999998876 2445 555677777
Q ss_pred HHHHhCCCccchhHHhhhhc
Q 004055 194 APIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 194 ~~l~~LG~~eeArk~~KKa~ 213 (776)
.+++..|+.++|..++.+-.
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHH
Confidence 78999999999999988743
No 241
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.16 E-value=0.073 Score=59.89 Aligned_cols=143 Identities=10% Similarity=-0.108 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH------------
Q 004055 62 YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA------------ 129 (776)
Q Consensus 62 yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a------------ 129 (776)
.......|+++|...|.. +.++++.+..+...| +.+.|...+.+|+.. |.+...++..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~----~~lW~~ya~~~~~~~--~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYA----EEVYFFYSEYLIGIG--QKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHH
Confidence 345678999999999987 899999999999988 999999999999999 9875544433322
Q ss_pred ----------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHhh-
Q 004055 130 ----------------------------FDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALG-PRQEAQQDLQS- 179 (776)
Q Consensus 130 ----------------------------y~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg-~~qeA~~~l~k- 179 (776)
+...+..+.|...|.++ ...+....++...+.+....+ +.+.|...+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 22345667777777777 332224444444444444444 46777766655
Q ss_pred -CCCCCCHHHHHHHHHHHHhCCCccchhHHhhhh
Q 004055 180 -RPSPAALGASAVRGAPIAGLGPCLPARPVGKKA 212 (776)
Q Consensus 180 -kl~P~~~~a~~~lA~~l~~LG~~eeArk~~KKa 212 (776)
...|..+..+...+.....+|+.+.||..+.++
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223556665555566666777777777777775
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.82 E-value=0.03 Score=52.54 Aligned_cols=80 Identities=13% Similarity=-0.004 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHH
Q 004055 46 AHELKEEGNKRFQNKDYVG---ALEQYDNALRLT-PKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVR 121 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyee---Ale~Y~KALkLd-P~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~k 121 (776)
.+.-++.|-.|...+.-.. ++..+...++.. |. ..-.+++.+|..++++| +|.+|..+|+..|+.+|.|..
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~---~~Rd~lY~LAvg~yklg--~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH---HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhCCCCHH
Confidence 3456777778887776666 999999888875 42 24789999999999999 999999999999999999999
Q ss_pred HHHHHHHHH
Q 004055 122 ALLRRARAF 130 (776)
Q Consensus 122 Al~~rA~ay 130 (776)
|.-.+..+-
T Consensus 110 A~~Lk~~i~ 118 (126)
T 1nzn_A 110 AKELERLID 118 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766554
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.74 E-value=0.1 Score=57.11 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-CC-----------------hHHHHHHHHHHHHHcCCCCHHHH
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH-PD-----------------RAVFHSNRAACLMQMKPINYETV 105 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~-~d-----------------~A~ay~n~A~cy~~LG~gdyeeA 105 (776)
..-..+...|......|+.+.|+..|.+|+.+..... ++ +..+...++.+++.+| ++.+|
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g--~~~~a 190 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG--RASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHH
Confidence 4456667778888889999999999999999975421 00 1122333444555555 66666
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 106 IAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 106 i~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
+..+..++..+|-+-.++..+-.+|+..|+..+|+..|+++
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666654
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.65 E-value=0.11 Score=49.87 Aligned_cols=80 Identities=4% Similarity=-0.101 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 46 AHELKEEGNKRFQNKDY---VGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdy---eeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kA 122 (776)
.+.-++.+-.|.....- ..++..++..++..|.. .-.+++.+|..++++| +|.+|..+|+..|+.+|+|..|
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~--~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLG--EYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhh--hHHHHHHHHHHHHhcCCCcHHH
Confidence 44556677777777644 46999999999987753 5789999999999999 9999999999999999999988
Q ss_pred HHHHHHHH
Q 004055 123 LLRRARAF 130 (776)
Q Consensus 123 l~~rA~ay 130 (776)
.-.+..+-
T Consensus 114 ~~Lk~~Ie 121 (144)
T 1y8m_A 114 GALKSMVE 121 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.52 E-value=0.087 Score=49.89 Aligned_cols=80 Identities=5% Similarity=-0.085 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHH
Q 004055 47 HELKEEGNKRFQNKD---YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRAL 123 (776)
Q Consensus 47 ~~LkeeGn~lfqkGd---yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl 123 (776)
+.-++.+-.|.+.++ ...++..+...++..|.. +-.+++.+|..+.++| +|..|..+|+..|+.+|.|..|.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~yklg--dY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLG--EYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhCCCCHHHH
Confidence 344556666766664 457999999999988743 5789999999999999 99999999999999999999987
Q ss_pred HHHHHHHH
Q 004055 124 LRRARAFD 131 (776)
Q Consensus 124 ~~rA~ay~ 131 (776)
-.+..+--
T Consensus 116 ~Lk~~Ie~ 123 (134)
T 3o48_A 116 ALKSMVED 123 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.07 E-value=0.14 Score=50.30 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH
Q 004055 87 HSNRAACLMQMKPINYETVIAECTMALQVQPRF---------VRALLRRARAFDAIGKYEMAMQDVQVLLGVE---PNHR 154 (776)
Q Consensus 87 y~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n---------~kAl~~rA~ay~aLGr~deAl~d~~kAL~Ld---P~N~ 154 (776)
++.-..-++..+ .|+.|+..++.++.+..++ ..+++.+|.+++..++|..|...|+++|.+. |.++
T Consensus 23 l~dqik~L~d~~--LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 23 VIDHVRDMAAAG--LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444555566 9999999999987764332 3488999999999999999999999997652 2222
Q ss_pred ----------------------HHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 155 ----------------------DALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 155 ----------------------~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
++.+.++.|+..++++.+|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 4555666666666666666666554
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.31 E-value=0.29 Score=47.47 Aligned_cols=110 Identities=16% Similarity=0.034 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 004055 47 HELKEEGNKRFQNKDY------VGALEQYDNALRLTPKTHP----DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ 116 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdy------eeAle~Y~KALkLdP~~~~----d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld 116 (776)
+.+......+-+.|+. +.-++.|++|+...|...- -.+.++.+.|. +..++ +.++|.+.|+.++.+.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~--D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQ--EPDDARDYFQMARANC 90 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHH--CGGGCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhc--CHHHHHHHHHHHHHHh
Confidence 4555555566666777 8889999999998885310 12455555553 35667 9999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 004055 117 PRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEI 159 (776)
Q Consensus 117 P~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~ 159 (776)
.++++.++..|..-...|++..|...+.+++.+.|.....+..
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 9999999999999999999999999999999999988766554
No 248
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.86 E-value=2.6 Score=47.42 Aligned_cols=122 Identities=10% Similarity=0.025 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHh--CCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Q 004055 60 KDYVGALEQYDNALRL--TPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ-PRFVRALLRRARAFDAIGKY 136 (776)
Q Consensus 60 GdyeeAle~Y~KALkL--dP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld-P~n~kAl~~rA~ay~aLGr~ 136 (776)
++++.|...|.+-... .|+ ...|..+-.+|.+.| ++++|...+.+..... .-+...|..+-.+|...|++
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd-----~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPN-----EATFTNGARLAVAKD--DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 3478899999887664 344 567888899999999 9999999999887753 22677888888899999999
Q ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCChHHHHHHHhh----CCCCCCHHH
Q 004055 137 EMAMQDVQVLLGVEP-NHRDALEIARRLRTALGPRQEAQQDLQS----RPSPAALGA 188 (776)
Q Consensus 137 deAl~d~~kAL~LdP-~N~~al~~la~ll~~lg~~qeA~~~l~k----kl~P~~~~a 188 (776)
++|...|+...+..- -|...+..+-.++.+.|+.++|...+.+ ...|....+
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999876532 2567788888999999999999998876 345654443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.92 Score=54.11 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH--------cCCCCH----------HH
Q 004055 62 YVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKP-INYETVIAECTMALQ--------VQPRFV----------RA 122 (776)
Q Consensus 62 yeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~-gdyeeAi~~~~kALe--------ldP~n~----------kA 122 (776)
++.|+..+.+....+|.. ..++.++.+.+.... .+--+|+...+++++ +.+.+. ..
T Consensus 265 ~~~a~~~le~L~~~~p~~-----~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIH-----DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp HHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCch-----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 678999999999999974 334444443332110 134567777777774 233332 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+..-+..+...|+|+.|+...++++.+-|.+...|+.++.+|..+|+++.|+-.+..
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 444467777899999999999999999999999999999999999999999988765
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.51 E-value=2.7 Score=45.66 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHcCCC----------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 004055 101 NYETVIAECTMALQVQPR----------F------------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALE 158 (776)
Q Consensus 101 dyeeAi~~~~kALeldP~----------n------------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~ 158 (776)
+...|+..+.+||.+-.. + ..++..++.++..+|++.+|+..+.+++..+|-+..++.
T Consensus 130 ~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~ 209 (388)
T 2ff4_A 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWT 209 (388)
T ss_dssp CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 899999999999988422 1 235667788889999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHhh
Q 004055 159 IARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 159 ~la~ll~~lg~~qeA~~~l~k 179 (776)
.+..++...|+..+|+..|..
T Consensus 210 ~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 210 QLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999998865
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.68 Score=55.19 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
..++...+..++..| +|+-|+....+|...-|.....|+.++.||..+|+|+.|+-.++-+
T Consensus 337 ~~LL~~Qa~FLl~K~--~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRG--DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccC--cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445666677777777 9999999999999999999999999999999999999999765543
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.97 E-value=1.3 Score=50.24 Aligned_cols=76 Identities=9% Similarity=-0.104 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004055 88 SNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 88 ~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~ 165 (776)
.++|....... .+..|..+|.+|+.+.|.+-..|..+|.+....|+.-.|+-+|.++|......+.+..++..++.
T Consensus 156 ~~LGDL~RY~~--~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 156 VHLGDIARYRN--QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHcccHHHHHH--HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 33444444444 55666666666666666666666666666666666666666666666655555666665555544
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.75 E-value=2.8 Score=44.11 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=58.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHH
Q 004055 54 NKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRA 122 (776)
Q Consensus 54 n~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kA 122 (776)
..+++.|...+|+......|+..|.+ +..+..+-+.+.-.| ++++|..-++.+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~d----a~~R~~LfqLLcv~G--~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDG--DFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTC----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCchhhHH
Confidence 46789999999999999999999998 899999999999999 9999999999999999987654
No 254
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.89 E-value=3.8 Score=47.05 Aligned_cols=105 Identities=10% Similarity=-0.067 Sum_probs=71.2
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HhhCCCCHHHHHHHHHHHH
Q 004055 94 LMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL--------LGVEPNHRDALEIARRLRT 165 (776)
Q Consensus 94 y~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA--------L~LdP~N~~al~~la~ll~ 165 (776)
.+.+| +++.|.+.+. ...+...|..+|..+...++++.|...|.++ |.....+...+..++.+..
T Consensus 662 ~l~~~--~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 662 ALKVG--QLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHT--CHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcC--CHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 34566 7777777543 3357888999999999999999999999886 2233566777777777777
Q ss_pred HcCChHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCccchhHHhhh
Q 004055 166 ALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVGKK 211 (776)
Q Consensus 166 ~lg~~qeA~~~l~kkl~P~~~~a~~~lA~~l~~LG~~eeArk~~KK 211 (776)
..|++..|...+.+.-++ .....+|..++++++|....++
T Consensus 735 ~~~~~~~A~~~~~~~g~~------~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 735 TTGKFNLAFNAYWIAGDI------QGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HTTCHHHHHHHHHHHTCH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHcCCH------HHHHHHHHHcCChHHHHHHHHH
Confidence 777777777655431111 1123456677777777776665
No 255
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.77 E-value=4 Score=46.78 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 004055 84 AVFHSNRAACLMQMKPINYETVIAECTMA--------LQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRD 155 (776)
Q Consensus 84 A~ay~n~A~cy~~LG~gdyeeAi~~~~kA--------LeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~ 155 (776)
...+.++|..+++.+ +++.|...|.++ |.....+.+.+..++......|++..|...|.+. ++
T Consensus 681 ~~~W~~la~~al~~~--~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~-- 751 (814)
T 3mkq_A 681 EMKWRALGDASLQRF--NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD-- 751 (814)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC--
T ss_pred HhHHHHHHHHHHHcC--CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC--
Confidence 678999999999999 999999999875 2223456677777788888888888887776541 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhhCCCCCC--H-HHHHHHHHHHHhCCCccch
Q 004055 156 ALEIARRLRTALGPRQEAQQDLQSRPSPAA--L-GASAVRGAPIAGLGPCLPA 205 (776)
Q Consensus 156 al~~la~ll~~lg~~qeA~~~l~kkl~P~~--~-~a~~~lA~~l~~LG~~eeA 205 (776)
......++..++++.+|...... ..|.. . ......+.-+...|++..|
T Consensus 752 -~~~a~~~~~~~~~~~~A~~lA~~-~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 752 -IQGAKDLLIKSQRFSEAAFLGST-YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHHcCChHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 12345556778888888776544 34434 2 3334445555666654333
No 256
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=87.88 E-value=10 Score=37.69 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=75.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--c------------
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ--V------------ 115 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe--l------------ 115 (776)
...+..+|-.|.|.+|+-.+. .+ .+ +...+..+.||.+++ +|..|+..+...|+ .
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~---~l-NT-----~Ts~YYk~LCy~klK--dYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH---KL-NT-----CTSKYYESLCYKKKK--DYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH---TC-CB-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred hhhhhhhhhcchHhHHHHHHH---hc-ch-----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccccCcccccccce
Confidence 456788899999998887652 22 22 666677899999999 99999999999983 2
Q ss_pred ---CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 004055 116 ---QPRFVR-ALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDA 156 (776)
Q Consensus 116 ---dP~n~k-Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~a 156 (776)
||.+.. .+..+|.++.++|+-++|+.+|......+|-.+.+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 344444 45667999999999999999999999999865544
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.78 E-value=1.7 Score=45.78 Aligned_cols=116 Identities=12% Similarity=-0.015 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH-HH
Q 004055 99 PINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQ-DL 177 (776)
Q Consensus 99 ~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~-~l 177 (776)
.|.++.|+..+...++.+|.+......+-..++-.|+++.|..-++.+.+++|.....-..+..+... +.... .|
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----E~~R~~vf 85 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----AQARKDFA 85 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----HHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999876554443332221 11122 22
Q ss_pred hhC-----CC-CCCHHHHHHHHHHHHhCCCccchhHHhhhhcCCCCC
Q 004055 178 QSR-----PS-PAALGASAVRGAPIAGLGPCLPARPVGKKAGAPAGG 218 (776)
Q Consensus 178 ~kk-----l~-P~~~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~ 218 (776)
.-. +. |..-....+.+......|+.++|......+....|.
T Consensus 86 aG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 86 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 211 11 222223445577777889999999998887544444
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.88 E-value=3.1 Score=47.24 Aligned_cols=82 Identities=18% Similarity=0.080 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLR 125 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~ 125 (776)
..-+...|+...-+..+..|..+|.+|+.+.|.+ ...|..+|.+....| ++-.|+-+|.++|....-++.|.-+
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~----G~~~nqLavla~~~~--~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN----GQPYNQLAILASSKG--DHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB----SHHHHHHHHHHHHTT--CHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC----CchHHHHHHHHhccc--ccHHHHHHHHHHHhcCCCChhHHHH
Confidence 3457889999999999999999999999999997 788999999999998 9999999999999988889999999
Q ss_pred HHHHHHHc
Q 004055 126 RARAFDAI 133 (776)
Q Consensus 126 rA~ay~aL 133 (776)
+...+...
T Consensus 226 L~~~f~~~ 233 (497)
T 1ya0_A 226 LQKALSKA 233 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887653
No 259
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=84.45 E-value=35 Score=34.00 Aligned_cols=84 Identities=12% Similarity=0.126 Sum_probs=60.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARA 129 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~a 129 (776)
+..-...++-++|+.++-.-.-. .|.. +.....++..+...| +|..|+-.+. .-+-..+.|-.+.|
T Consensus 6 ~~kI~Ks~kY~dYdt~~fLsa~L---~~~~----~eY~lL~~I~Lyyng--EY~R~Lf~L~-----~lNT~Ts~YYk~LC 71 (242)
T 3kae_A 6 IGKICKSIRYRDYETAIFLAACL---LPCK----PEYRMLMSIVLYLNG--EYTRALFHLH-----KLNTCTSKYYESLC 71 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH---C--------CTHHHHHHHHHHTT--CHHHHHHHHH-----TCCBHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHH---ccCC----hHHHhhhhhhhhhcc--hHhHHHHHHH-----hcchHHHHHHHHHH
Confidence 34445678889999987654333 3333 233455677777778 9998876542 33567888999999
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004055 130 FDAIGKYEMAMQDVQVLL 147 (776)
Q Consensus 130 y~aLGr~deAl~d~~kAL 147 (776)
|..+.+|..|+..+...|
T Consensus 72 y~klKdYkkA~~~le~il 89 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.21 E-value=4.4 Score=44.60 Aligned_cols=100 Identities=12% Similarity=-0.083 Sum_probs=79.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCCC---HHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV---QPRF---VRA 122 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel---dP~n---~kA 122 (776)
+...|..++..|++..|+..|.++...-... .....+++++..+++..+ ++..+...+.++..+ .++. .+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~~~--d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFFYN--DQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 5679999999999999999999988865442 346788899999999999 999999999998665 2221 133
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 004055 123 LLRRARAFDAIGKYEMAMQDVQVLLGVEP 151 (776)
Q Consensus 123 l~~rA~ay~aLGr~deAl~d~~kAL~LdP 151 (776)
....|.++...++|..|...|..++.-..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 44557777888999999999988876543
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.02 E-value=11 Score=41.63 Aligned_cols=171 Identities=12% Similarity=0.021 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Q 004055 40 SIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP-DRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPR 118 (776)
Q Consensus 40 ~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~-d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~ 118 (776)
+.....=+.+.+.|..|.+.|++++-...+.......+.-+. -.+.+-.++-..+... ++..+.-+..|..+++.--+
T Consensus 13 ~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~ 91 (394)
T 3txn_A 13 ERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM-DAGTGIEVQLCKDCIEWAKQ 91 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 334445567899999999999999999888776555444310 0122223333344444 35778888888888874222
Q ss_pred ----CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHhhC------
Q 004055 119 ----FVR--ALLRRARAFDAIGKYEMAMQDVQVLLGVEPN--H----RDALEIARRLRTALGPRQEAQQDLQSR------ 180 (776)
Q Consensus 119 ----n~k--Al~~rA~ay~aLGr~deAl~d~~kAL~LdP~--N----~~al~~la~ll~~lg~~qeA~~~l~kk------ 180 (776)
+-+ .-.++|..|+..|+|.+|+..+.+.+.--.. + .+++..-..++..+++...+...+.+.
T Consensus 92 ~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 92 EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 223 2338999999999999999999998874221 1 344555667788899999988877651
Q ss_pred CCCCCHH----HHHHHHHHHH-hCCCccchhHHhhhh
Q 004055 181 PSPAALG----ASAVRGAPIA-GLGPCLPARPVGKKA 212 (776)
Q Consensus 181 l~P~~~~----a~~~lA~~l~-~LG~~eeArk~~KKa 212 (776)
+ +.++. ....-|.++. ..++|..|...+-.+
T Consensus 172 i-~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 172 I-YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2 12232 2344588899 899999999887765
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.18 E-value=8.5 Score=42.37 Aligned_cols=96 Identities=14% Similarity=-0.054 Sum_probs=75.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CCCH----H
Q 004055 51 EEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQ---PRFV----R 121 (776)
Q Consensus 51 eeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeld---P~n~----k 121 (776)
..|..++..|+|.+|+..+.+.++--.... .....+|......|..++ ++.++...+.+|.... +.++ .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~--n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALS--NLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 578899999999999999999998644321 135567888889999999 9999999999987653 1222 3
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 004055 122 ALLRRARAFD-AIGKYEMAMQDVQVLLG 148 (776)
Q Consensus 122 Al~~rA~ay~-aLGr~deAl~d~~kAL~ 148 (776)
....-|..+. ..++|..|..+|-.++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 4455577888 79999999999999874
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.10 E-value=2.4 Score=48.47 Aligned_cols=119 Identities=8% Similarity=-0.091 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHH-----------HcCCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHH-----hhCCCC-
Q 004055 101 NYETVIAECTMAL-----------QVQPRFVRALLRRARAFDAIGKYEMAMQ----------DVQVLL-----GVEPNH- 153 (776)
Q Consensus 101 dyeeAi~~~~kAL-----------eldP~n~kAl~~rA~ay~aLGr~deAl~----------d~~kAL-----~LdP~N- 153 (776)
+|++|...+...+ .+|+-.++.||-.++++..+|+...... .+..++ ..|+..
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~q 230 (523)
T 4b4t_S 151 ELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETK 230 (523)
T ss_dssp ----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchh
Confidence 8888887776554 1255678899999999999888776432 222222 234432
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhhCCCCCC-------HHHHHHHHHHHHhCCCccchhHHhhhhcCCCCCC
Q 004055 154 RDALEIARRLRTALGPRQEAQQDLQSRPSPAA-------LGASAVRGAPIAGLGPCLPARPVGKKAGAPAGGL 219 (776)
Q Consensus 154 ~~al~~la~ll~~lg~~qeA~~~l~kkl~P~~-------~~a~~~lA~~l~~LG~~eeArk~~KKa~~s~P~~ 219 (776)
..++..+-+.+...+.+.+|.....+...|.. +.+++..|+++...++|.+|..++..+....|+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 45566677778888999999999888545532 4567778999999999999999999988766664
No 264
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.89 E-value=10 Score=36.71 Aligned_cols=99 Identities=16% Similarity=0.063 Sum_probs=68.5
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHcCCHHHH
Q 004055 74 RLTPKTHPDRAVFHSNRAACLMQMKPINY------ETVIAECTMALQVQPR--------FVRALLRRARAFDAIGKYEMA 139 (776)
Q Consensus 74 kLdP~~~~d~A~ay~n~A~cy~~LG~gdy------eeAi~~~~kALeldP~--------n~kAl~~rA~ay~aLGr~deA 139 (776)
-+.|++ .+.+.+........| +. ++-++.|.+|+..-|- ++..|.+.|.. ..+++.+.|
T Consensus 7 ~~~p~~----yd~W~~yl~llE~~g--~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~a 79 (161)
T 4h7y_A 7 MMMANN----PEDWLSLLLKLEKNS--VPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDA 79 (161)
T ss_dssp ---CCS----HHHHHHHHHHHHHHT--CSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGC
T ss_pred eeCCCC----HHHHHHHHHHHHHcC--CCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHH
Confidence 345665 666666666666666 66 7777788888776553 44556666644 567888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 140 MQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 140 l~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.+.|+.++.+.....-++...+..-.+.|+...|...+.+
T Consensus 80 R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 80 RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8888888888777777777777777777888777777655
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.17 E-value=28 Score=38.44 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---cCCC
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH--PDRAVFHSNRAACLMQMKPINYETVIAECTMALQ---VQPR 118 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~--~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe---ldP~ 118 (776)
+++......+..++..|+|.+|...+.....-.-... .....++......|+..+ +|.+|...++++.. -.+.
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~--d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG--DYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhhcccCC
Confidence 6788888899999999999999999988764221111 124567888888889999 99999999998742 2333
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 119 FV----RALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 119 n~----kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
.+ ..+...|..+...++|.+|..+|..++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33 45677788899999999999999998864
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.33 E-value=14 Score=45.81 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=64.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-------------------
Q 004055 55 KRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV------------------- 115 (776)
Q Consensus 55 ~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel------------------- 115 (776)
.++..+.|+-|.+ .+...|.+ +...+.+|.||+..| ++++|...+.+|-..
T Consensus 821 ~l~~~~~~~~~~~----l~~~~~~~----~~~~yl~g~~~L~~g--e~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ----LIGWLNSD----PIAVYLKALIYLKSK--EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHSCTTHHHH----HHHHSCCC----HHHHHHHHHHHHHTT--CHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHhhhHHHHHH----HhhhccCC----cHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 4555555544433 23344444 344566777777777 777777777665210
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHcCChHHHHHHHh
Q 004055 116 ----QPRFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEP-NHRD----ALEIARRLRTALGPRQEAQQDLQ 178 (776)
Q Consensus 116 ----dP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP-~N~~----al~~la~ll~~lg~~qeA~~~l~ 178 (776)
....+..|+....++...+.++.+++..+.|+...+ ++.. .+..+-+.+..++++++|...+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 111234566666677777777777777777776554 3322 33444455556666666655553
No 267
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=72.83 E-value=7.2 Score=33.55 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=32.7
Q ss_pred hHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 39 SSI-FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 39 ~~~-~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
... +++.|..+..+|..+=+.|+|.+|+.+|..+|+.
T Consensus 3 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 3 AQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344 7889999999999999999999999999998885
No 268
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=68.37 E-value=7.6 Score=35.68 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 41 IFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 41 ~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
.+++.|..+..+|..+=..|+|++|+.+|..||.+
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999888775
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.45 E-value=26 Score=43.39 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=73.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------CCChHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKT-------------------HPDRAVFHSNRAACLMQMKPINYETVIAEC 109 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~-------------------~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~ 109 (776)
-+..|..++..|++++|..+|.+|-.-.... ....+.+|+.+...+.+.+ -|+.++...
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~--~~~~vi~fa 922 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES--AYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS--CCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 3778999999999999999998874322110 1124567888888888888 999999999
Q ss_pred HHHHHcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004055 110 TMALQVQP-RFV----RALLRRARAFDAIGKYEMAMQDVQV 145 (776)
Q Consensus 110 ~kALeldP-~n~----kAl~~rA~ay~aLGr~deAl~d~~k 145 (776)
..||+..+ ++. ..|.++-.++..+|+|++|...+..
T Consensus 923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 923 LLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 99998754 333 2567777889999999999877654
No 270
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=66.01 E-value=34 Score=33.57 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=28.9
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004055 95 MQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKYEMAMQDVQVL 146 (776)
Q Consensus 95 ~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~deAl~d~~kA 146 (776)
+++| +++.|...+... ++..-|-++|......|+++-|..+|+++
T Consensus 16 L~lg--~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYG--NLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTT--CHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcC--CHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455 777776666543 45666677777777777777777766653
No 271
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.15 E-value=12 Score=32.24 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 40 SIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 40 ~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
..+++.|..+..+|..+=+.|+|.+|+.+|..+|+.
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999885
No 272
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=58.71 E-value=11 Score=32.13 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 41 IFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 41 ~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
.+++.|..+..+|...=..|+|++|+.+|..++.+
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999885
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=56.26 E-value=40 Score=39.15 Aligned_cols=128 Identities=12% Similarity=-0.090 Sum_probs=64.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRAR 128 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ 128 (776)
+...+...+.+++.+.|...|.+.....+-++.....+...+|.-++..+ ...++...+..+.....+....-+ +++
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~-~~r 293 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGND--VTDEQAKWRDDAIMRSQSTSLIER-RVR 293 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTT--CCHHHHHHHHHHHHTCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcC--CChHHHHHHHhccccCCChHHHHH-HHH
Confidence 34444555555677777777766554332221111111111221111111 245566666665543333332223 333
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 129 AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 129 ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
..+..|++..|...|.+.-.-.+......+-+++++..+|+..+|...|..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334557777777777654443334456666777777777777777666655
No 274
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=55.94 E-value=13 Score=32.07 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=48.2
Q ss_pred ccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCeeeecChHHHHHHHHhcccccccCcccccCCCCCcEEEEEEecCC
Q 004055 307 MPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLVTITCTAELRLAESASDSLMTKEPEADKSDSVGMLRLHIVDVSP 385 (776)
Q Consensus 307 v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g~~rL~v~e~~~ 385 (776)
++.+.|..+|..+|..+++.. ..-++-|+|.+|.++.--.+|+-.++.... ..-.+|||+...|
T Consensus 21 ~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i---------------~~g~~ihlvd~~P 85 (86)
T 4b6w_A 21 YGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQC---------------RDEFVIHVVDLQP 85 (86)
T ss_dssp EETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTC---------------CTTCEEEEEECCC
T ss_pred cCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCC---------------CCCCEEEEEeCCC
Confidence 699999999999999999965 458899999998887666666544333222 2336888998776
No 275
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=53.28 E-value=20 Score=31.33 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
+++.|..+...|..+=..|+|++|+.+|..+|.+
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999998885
No 276
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.37 E-value=31 Score=30.46 Aligned_cols=55 Identities=25% Similarity=0.374 Sum_probs=38.1
Q ss_pred cccceeEeeccc--eeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHH
Q 004055 290 RWRPLKLVYDHD--IRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAEL 350 (776)
Q Consensus 290 ~~~~vK~~~~~D--iR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL 350 (776)
+.+++||. ..| +|+-++.. |+.+|+.++.++|........=+-++||..| ++||.
T Consensus 8 ~~kpfkV~-~~~Rs~k~GV~A~--sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~V---ddEey 64 (91)
T 2eel_A 8 PARPFRVS-NHDRSSRRGVMAS--SLQELISKTLDALVIATGLVTLVLEEDGTVV---DTEEF 64 (91)
T ss_dssp CCEEEEEE-CTTSCCCEEEEES--SHHHHHHHHHHHTTCSSSCEEEEETTTCCBC---CCHHH
T ss_pred CCCCEEEe-cCCCCeEEeEEcC--CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEE---echhh
Confidence 45678877 344 56655443 7999999999999975443444667799655 46776
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.35 E-value=98 Score=37.58 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=51.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cC--------------
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ-VQ-------------- 116 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-ld-------------- 116 (776)
....+...|.|+-|.+ .+...|.+ +..-|-+|.||+.+| ++++|...+.+|-. +.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t----~~~~yv~gr~~L~~g--e~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ 885 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSD----PIAVYLKALIYLKSK--EAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 885 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSS----HHHHHHHHHHHHHTT--CHHHHHHHHHTCCCTTCSSCCSCGGGHHHHH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCC----hHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhcccCcccccchhhhhh
Confidence 3445556666654332 23444544 333456777777777 77777777765421 10
Q ss_pred ------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHH
Q 004055 117 ------PR--FVRALLRRARAFDAIGKYEMAMQDVQVLLG-VEPNHRD 155 (776)
Q Consensus 117 ------P~--n~kAl~~rA~ay~aLGr~deAl~d~~kAL~-LdP~N~~ 155 (776)
+. ....|++...++...+-++-++...+.||. +.++++.
T Consensus 886 ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 886 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 00 123556666666677777777777777765 3344443
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.99 E-value=20 Score=40.87 Aligned_cols=84 Identities=8% Similarity=0.060 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRF-------VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHR- 154 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n-------~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~- 154 (776)
.+.++..+-..|+..+ .|++|.....++. .|.+ ...+|..|+++...++|.+|..++..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~~--~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 230 KAMLINLILRDFLNNG--EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHHSS--CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred hHHHHHHHHHHHHccC--cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 4667777777888888 9999999998884 3322 56778889999999999999999999998887553
Q ss_pred ------HHHHHHHHHHHHcCCh
Q 004055 155 ------DALEIARRLRTALGPR 170 (776)
Q Consensus 155 ------~al~~la~ll~~lg~~ 170 (776)
.++..+-.+...+|+.
T Consensus 306 a~gfr~~a~K~lI~V~LLlG~i 327 (523)
T 4b4t_S 306 SLGFLQQSNKLHCCIQLLMGDI 327 (523)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHhHHhhcCCC
Confidence 2333334444446663
No 279
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=45.41 E-value=2e+02 Score=35.83 Aligned_cols=95 Identities=4% Similarity=-0.139 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--CCCC
Q 004055 47 HELKEEGNKRFQNKDYVGALEQYDNALR-----LTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQV--QPRF 119 (776)
Q Consensus 47 ~~LkeeGn~lfqkGdyeeAle~Y~KALk-----LdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel--dP~n 119 (776)
..|...-+.|.+.|+.++|...|...-. ..|+ ...|.-+-..|.+.| ++++|...+.+-.+. .| +
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----vvTYNtLI~Glck~G--~~~eA~~Lf~eM~~~G~~P-D 199 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----LDMYNAVMLGWARQG--AFKELVYVLFMVKDAGLTP-D 199 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----HhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCC-c
Confidence 3467777788899999999999866433 3555 677888888888988 999999998887764 34 5
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh
Q 004055 120 VRALLRRARAFDAIGKY-EMAMQDVQVLLGV 149 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~-deAl~d~~kAL~L 149 (776)
...|..+-.++.+.|+. +.|...|+.....
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 66777777788888874 6788888776653
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.53 E-value=29 Score=33.62 Aligned_cols=69 Identities=6% Similarity=0.022 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCChHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPKT--HPDRAVFHSN-RAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~--~~d~A~ay~n-~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
...-+..|..+|..|+|=+|-+.++.+....+.. ....-..+.. +|.++.....|+...|...+.+|+.
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455788999999999999999999999887653 1111222333 3333333322277777777777665
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=43.73 E-value=4.3e+02 Score=30.46 Aligned_cols=145 Identities=10% Similarity=-0.027 Sum_probs=86.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 004055 52 EGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFD 131 (776)
Q Consensus 52 eGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~ 131 (776)
.+..++..+...++...+.+.+...++. .......+. -++.+ ++..|...+...-.-.+....+.|=+|+++.
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~r~-Alr~~--d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~ 330 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRSQST----SLIERRVRM-ALGTG--DRRGLNTWLARLPMEAKEKDEWRYWQADLLL 330 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTCCCH----HHHHHHHHH-HHHHT--CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHhccccCCCh----HHHHHHHHH-HHHCC--CHHHHHHHHHHccccccccHhHHHHHHHHHH
Confidence 3444455554567777787766544332 223333333 34567 9999999887654433456889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh-CCCCC--CH---HHHHHHHHHHHhCCCccch
Q 004055 132 AIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS-RPSPA--AL---GASAVRGAPIAGLGPCLPA 205 (776)
Q Consensus 132 aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k-kl~P~--~~---~a~~~lA~~l~~LG~~eeA 205 (776)
.+|+.++|...|.++.. +.+. |..+ +..++|.... +.. ...+. .. ...+.++..+..+|....|
T Consensus 331 ~~g~~~~a~~~~~~~a~--~~~f--Yg~l--Aa~~Lg~~~~----~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a 400 (618)
T 1qsa_A 331 ERGREAEAKEILHQLMQ--QRGF--YPMV--AAQRIGEEYE----LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTA 400 (618)
T ss_dssp HTTCHHHHHHHHHHHHT--SCSH--HHHH--HHHHTTCCCC----CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHhc--CCCh--HHHH--HHHHcCCCCC----CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhH
Confidence 99999999999999875 3332 2222 2233443110 000 11110 00 1123456677888888888
Q ss_pred hHHhhhhc
Q 004055 206 RPVGKKAG 213 (776)
Q Consensus 206 rk~~KKa~ 213 (776)
+.......
T Consensus 401 ~~ew~~~~ 408 (618)
T 1qsa_A 401 RSEWANLV 408 (618)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655544
No 282
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.48 E-value=3.3e+02 Score=29.06 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHH-------HHHc--C---CCCHHHHHHHHHH
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH----PDRAVFHSNRAAC-------LMQM--K---PINYETVIAECTM 111 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~----~d~A~ay~n~A~c-------y~~L--G---~gdyeeAi~~~~k 111 (776)
.....|..++..|+|.+|+..|+.+|...|-.. .+...+.-.+..| -+.+ + ....+...+.+..
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 356889999999999999999999999886321 1111221111111 1122 1 0011222332332
Q ss_pred HH-----HcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC
Q 004055 112 AL-----QVQPRFVRALLRRAR-AFDAIGKYEMAMQDVQVLLGVEPN 152 (776)
Q Consensus 112 AL-----eldP~n~kAl~~rA~-ay~aLGr~deAl~d~~kAL~LdP~ 152 (776)
|. .+.|.+-..-++.|. ..++.++|..|....++.|++.|.
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 21 224433333333333 468999999999999999999885
No 283
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=43.34 E-value=35 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 44 KRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 44 e~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
..|..+..+|..+-..|+|++|+.+|..+|.+
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778889999999999999999999988875
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.14 E-value=50 Score=29.34 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRL 75 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkL 75 (776)
.+..|..+--.+..+...|.|++||++..+|...
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998887754
No 285
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=43.02 E-value=75 Score=28.13 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHH-HHHHHHHHHc
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFH-SNRAACLMQM 97 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay-~n~A~cy~~L 97 (776)
..+.+..+..+|..+|..++|.+|+.+|+++..+..+. .+-.++ +.++.|--++
T Consensus 49 ~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~--~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 49 KEKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNE--EIKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCH--HHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999875542 233344 5666665443
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.01 E-value=3.4e+02 Score=29.08 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004055 43 LKRAHELKEEGNKRFQNKDYVGALEQYDN 71 (776)
Q Consensus 43 le~A~~LkeeGn~lfqkGdyeeAle~Y~K 71 (776)
-+.-+.++-..+++.++++|.+|++..-.
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 56677777777788888888877775443
No 287
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.29 E-value=30 Score=37.92 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHhhC-----CCCC-CH--
Q 004055 118 RFVRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNH---RDALEIARRLRTALGPRQEAQQDLQSR-----PSPA-AL-- 186 (776)
Q Consensus 118 ~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N---~~al~~la~ll~~lg~~qeA~~~l~kk-----l~P~-~~-- 186 (776)
....++..+|..|+..|+++.|+..|.++....... .+++....++....+++..+...+.+. ..++ ..
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 345688999999999999999999999988764432 456666667777788888888777651 1121 11
Q ss_pred HHHHHHHHHHHhCCCccchhHHhhhhc
Q 004055 187 GASAVRGAPIAGLGPCLPARPVGKKAG 213 (776)
Q Consensus 187 ~a~~~lA~~l~~LG~~eeArk~~KKa~ 213 (776)
......|.++...++|..|-.++-...
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 233445777788889988888776643
No 288
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.63 E-value=3.5e+02 Score=28.55 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 46 AHELKEEGNKRFQNKDYVGALEQYDNALRLTPK--THPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 46 A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~--~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
.+....+-......|+|=+|...|+......-. ...+...+.+.-|..+++.| ++..|.+.+...++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~--Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAK--QGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCC--CcchHHHHHHHHHH
Confidence 334444445556667777777777665543211 11122334455555555655 66666665544443
No 289
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=38.83 E-value=28 Score=29.88 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=32.5
Q ss_pred EEEEecCCCCeee-ecChHHHHHHHHhcccccccCcccccCCCCCcEEEEEEecCCCCCCCchh
Q 004055 331 LIKYKDNDGDLVT-ITCTAELRLAESASDSLMTKEPEADKSDSVGMLRLHIVDVSPEQEPPLLE 393 (776)
Q Consensus 331 ~iKYkDeDGDlVT-i~s~dDL~~A~~~~~~~~~~~~~~~~~~~~g~~rL~v~e~~~~~~~~~~~ 393 (776)
.|+--|+||..+- |+..+-|++|.+. .|-+++|+|.-+||.+.
T Consensus 15 eVrli~~~Ge~lGv~~~~eAl~~A~e~--------------------~LDLVevsp~a~PPVCk 58 (78)
T 1tif_A 15 EVRLIDQNGDQLGIKSKQEALEIAARR--------------------NLDLVLVAPNAKPPVCR 58 (78)
T ss_dssp EEEEECTTSCEEEEEEHHHHHHHHHHT--------------------TCEEEEEETTSSSCEEE
T ss_pred EEEEECCCCcCCCcccHHHHHHHHHHc--------------------CCCEEEECCCCCCCEEE
Confidence 3667899999764 5556667777754 26689999999999985
No 290
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=38.66 E-value=26 Score=31.77 Aligned_cols=60 Identities=22% Similarity=0.394 Sum_probs=43.5
Q ss_pred EeeccceeEEe---ccCCC-CHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHHHHHHHhc
Q 004055 296 LVYDHDIRLGQ---MPVNC-SFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAELRLAESAS 357 (776)
Q Consensus 296 ~~~~~DiR~~~---v~~~~-~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL~~A~~~~ 357 (776)
++||.|+-..+ +|++- ||.=|.-.+.+||| ..+|.+.|-|-+++--.+| +++-++|....
T Consensus 11 ~VYGAe~iCASCVnaPSSkeTyEWLqAal~RKyp-~~~f~~~YIDI~~~~~~l~-d~~~~~ae~I~ 74 (111)
T 1xg8_A 11 VVYGADVICASCVNAPTSKDIYDWLQPLLKRKYP-NISFKYTYIDITKDNDNLT-DHDLQFIERIE 74 (111)
T ss_dssp EEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCT-TSCEEEEEEETTTC---CC-HHHHHHHHHHH
T ss_pred EEEcccccchhccCCCCchhHHHHHHHHHhCcCC-CCceEEEEEeccCCccchh-HHHHHHHHHHh
Confidence 36899998877 46554 78889999999999 7899999999887632222 34666666544
No 291
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.83 E-value=2.8e+02 Score=30.40 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCC
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQV----QPRF--VRALLRRARAFDAIGKYEMAMQDVQVLLG---VEPNH 153 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel----dP~n--~kAl~~rA~ay~aLGr~deAl~d~~kAL~---LdP~N 153 (776)
++.+...+|..|...| +|.+|...+.....- +++. ...++...+.|...+++..|...++++.. -.+.+
T Consensus 136 rarl~~~La~i~e~~g--~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEG--KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 6677788899999999 999999988876531 2211 45778888899999999999999998742 34444
Q ss_pred HH----HHHHHHHHHHHcCChHHHHHHHhh
Q 004055 154 RD----ALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 154 ~~----al~~la~ll~~lg~~qeA~~~l~k 179 (776)
+. ++...+.++..-+++.+|-..|..
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 43 455667777777888888776654
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=37.02 E-value=4e+02 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 004055 42 FLKRAHELKEEGNKRFQNKDYVGALEQYDNALR 74 (776)
Q Consensus 42 ~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALk 74 (776)
+-+.-+.++-..+++.++++|++|++.+.....
T Consensus 29 yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~ 61 (312)
T 2wpv_A 29 YYEAHQTLRTIANRYVRSKSYEHAIELISQGAL 61 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345667788889999999999999998555544
No 293
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.99 E-value=40 Score=29.08 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=31.6
Q ss_pred cceeEEeccCCCCHHHHHHHHHhHCCC-CCceEEEEecCC
Q 004055 300 HDIRLGQMPVNCSFKALREIVSKRFPS-SKSVLIKYKDND 338 (776)
Q Consensus 300 ~DiR~~~v~~~~~~~~L~~~v~~kF~~-~~~~~iKYkDeD 338 (776)
....-..+|.+++..+|..+|...|+. ....+|.|.|.+
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~ 61 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK 61 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCC
Confidence 345556689999999999999999985 355899999853
No 294
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=35.82 E-value=3.2e+02 Score=33.98 Aligned_cols=93 Identities=5% Similarity=-0.060 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHH
Q 004055 83 RAVFHSNRAACLMQMKPINYETVIAECTMALQ-----VQPRFVRALLRRARAFDAIGKYEMAMQDVQVLLG--VEPNHRD 155 (776)
Q Consensus 83 ~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe-----ldP~n~kAl~~rA~ay~aLGr~deAl~d~~kAL~--LdP~N~~ 155 (776)
....|..+-.+|.+.| +.++|...+...-+ ..| +...|..+-..|+..|++++|+..|+.... +.| |..
T Consensus 126 ~~~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-Dvv 201 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHH
Confidence 3456778888999999 99999999976432 234 688899999999999999999999998876 456 566
Q ss_pred HHHHHHHHHHHcCCh-HHHHHHHhh
Q 004055 156 ALEIARRLRTALGPR-QEAQQDLQS 179 (776)
Q Consensus 156 al~~la~ll~~lg~~-qeA~~~l~k 179 (776)
.+..+-.++.+.|+. ++|...+..
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~E 226 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQ 226 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666666688888875 567676654
No 295
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=35.20 E-value=58 Score=33.43 Aligned_cols=51 Identities=16% Similarity=0.048 Sum_probs=43.2
Q ss_pred cceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCC--ceEEEEecCCCCee
Q 004055 292 RPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSK--SVLIKYKDNDGDLV 342 (776)
Q Consensus 292 ~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~--~~~iKYkDeDGDlV 342 (776)
++|+|++-|++.-+.+.++++-.+|.+.|.++.+... .|-+.|.|.+|...
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~ 54 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFST 54 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCcee
Confidence 5789999887777889999999999999999998654 39999999887654
No 296
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=34.58 E-value=1.3e+02 Score=26.18 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=31.7
Q ss_pred EEeccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCee
Q 004055 304 LGQMPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLV 342 (776)
Q Consensus 304 ~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlV 342 (776)
-+.|+++.|..+|..+|..+++.. ...++-|.+.+|..|
T Consensus 30 e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~ 69 (97)
T 2kj6_A 30 DARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKV 69 (97)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBC
T ss_pred EEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCccc
Confidence 345799999999999999999854 558889998776544
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=34.15 E-value=1.3e+02 Score=26.64 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 004055 36 DLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPK 78 (776)
Q Consensus 36 d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~ 78 (776)
..|......---.-...|..+...|+++.|+.+|-+||.+-|.
T Consensus 10 ~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 10 LKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3455554444555578899999999999999999999999887
No 298
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=34.13 E-value=73 Score=26.90 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 004055 48 ELKEEGNKRFQNKDYVGALEQYDNALRLTPKT 79 (776)
Q Consensus 48 ~LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~ 79 (776)
.-...|..+...|++++|+.+|-+||.+-|.-
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34678999999999999999999999998874
No 299
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=33.99 E-value=35 Score=30.00 Aligned_cols=63 Identities=14% Similarity=-0.123 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPINYETVIAECTMALQ 114 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~~d~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALe 114 (776)
...|..+|..|+|=+|-+.++.+....|....+.-.....+|..+.....|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 45788899999999999999999988854211112233333333333222365 7777777665
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.84 E-value=1.6e+02 Score=31.58 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=60.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----CCChHHHHHHHHHH--H-----HHcCCCC--HHHHHHHHHHH---
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKT----HPDRAVFHSNRAAC--L-----MQMKPIN--YETVIAECTMA--- 112 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~----~~d~A~ay~n~A~c--y-----~~LG~gd--yeeAi~~~~kA--- 112 (776)
....|..++..|+|.+|+..|+.+|...|-. ..+...+.-.+..| | +.+.... -+...+.+..|
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 4568999999999999999999999986632 11122222122222 1 1110000 00111112211
Q ss_pred --HHcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCH
Q 004055 113 --LQVQPRFVRALLRRAR-AFDAIGKYEMAMQDVQVLLGVEPNHR 154 (776)
Q Consensus 113 --LeldP~n~kAl~~rA~-ay~aLGr~deAl~d~~kAL~LdP~N~ 154 (776)
..+.|.+-..-++.|. ..++.++|..|....++.|++.|...
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 1223333222233333 56899999999999999999999644
No 301
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=31.59 E-value=64 Score=37.59 Aligned_cols=50 Identities=34% Similarity=0.403 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGP 169 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~ 169 (776)
..+.+.+|+..+..|+|.-|...++.++..+|+|..+...++.++..+|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999988764
No 302
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=31.26 E-value=36 Score=28.75 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=31.5
Q ss_pred ceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCC-CceEEEE
Q 004055 293 PLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSS-KSVLIKY 334 (776)
Q Consensus 293 ~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKY 334 (776)
.++|..-+=+.++.++.+.++.+|.++|.++|+.. ..+.|++
T Consensus 6 ~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 6 IIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 45555556688888999999999999999999854 3344433
No 303
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=30.34 E-value=1.8e+02 Score=28.07 Aligned_cols=125 Identities=11% Similarity=0.005 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC-----------CC---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 004055 50 KEEGNKRFQNKDYVGALEQYDNALRLTPKTH-----------PD---RAVFHSNRAACLMQMKPINYETVIAECTMALQV 115 (776)
Q Consensus 50 keeGn~lfqkGdyeeAle~Y~KALkLdP~~~-----------~d---~A~ay~n~A~cy~~LG~gdyeeAi~~~~kALel 115 (776)
..++..+.-.|..++.++...+.+...|... .+ ....+-.+|..+--..-|+....+..|-+ ..
T Consensus 11 LmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~-~n- 88 (172)
T 1wy6_A 11 LMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVI-NN- 88 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHH-TT-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHH-hc-
Confidence 4567778888999999999999988877431 00 11111112211100000133333322211 11
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHhh
Q 004055 116 QPRFVRALLRRAR-AFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARRLRTALGPRQEAQQDLQS 179 (776)
Q Consensus 116 dP~n~kAl~~rA~-ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ll~~lg~~qeA~~~l~k 179 (776)
.+++ |..+|. .+...|+-+.-...+...+.-+|-++..+.-++.+|.++|...++.+.+.+
T Consensus 89 --~~se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 89 --TLNE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp --CCCH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --chHH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 1122 122222 345666766666666665566666778888888888888887777776654
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.10 E-value=1.2e+02 Score=36.68 Aligned_cols=84 Identities=10% Similarity=0.005 Sum_probs=61.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--C-----------------CChHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 004055 49 LKEEGNKRFQNKDYVGALEQYDNALRLTPKT--H-----------------PDRAVFHSNRAACLMQMKPINYETVIAEC 109 (776)
Q Consensus 49 LkeeGn~lfqkGdyeeAle~Y~KALkLdP~~--~-----------------~d~A~ay~n~A~cy~~LG~gdyeeAi~~~ 109 (776)
-+..|..++..|++++|..+|.+|-.-.... . .....+|.+++..+.+.+ -|+.++..+
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~--a~~~vi~fA 920 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES--AYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence 3779999999999999999999876432111 0 113457888899999998 999999999
Q ss_pred HHHHHc-CCCCHH----HHHHHHHHHHHcC
Q 004055 110 TMALQV-QPRFVR----ALLRRARAFDAIG 134 (776)
Q Consensus 110 ~kALel-dP~n~k----Al~~rA~ay~aLG 134 (776)
..||.. .+++.. .+.++=+++.++|
T Consensus 921 ~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 921 LLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 999975 445443 4555555555544
No 305
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=29.44 E-value=1.2e+02 Score=35.17 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 004055 86 FHSNRAACLMQMKPINYETVIAECTMALQVQPRFVRALLRRARAFDAIGKY 136 (776)
Q Consensus 86 ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP~n~kAl~~rA~ay~aLGr~ 136 (776)
....+|...+..| +|.-|...++.++..+|+|..|...+|.+|.++|..
T Consensus 451 ~~~~~a~~~~~~g--~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 451 RLLEQARASYARG--EYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 3455666777778 999999999999999999999999999999877643
No 306
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=29.33 E-value=84 Score=31.34 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhhcCCCC--cccchHH----HHHHHhHHHHHhh-hChHHHHHHHHHHHHHHH
Q 004055 453 DWLFEFAQLFRTHVGIDPD--AHIDLHE----LGMELCSEALEET-VTSEEAQNLFDKAALKFQ 509 (776)
Q Consensus 453 ~w~~~fa~lf~~~~g~d~d--~~ldl~~----~g~~~~~eale~~-v~~~~a~~lf~~a~~kfq 509 (776)
+|.-+.++.++++.|++++ .++++|. --.+.|.+.|+.. .+.++.+.+.+.|...|+
T Consensus 145 ~~~~~~~~~l~~~~~l~~~~~~f~~~h~~~d~~h~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~ 208 (239)
T 3dde_A 145 GYIDPVLKAIQSTLDLTPQSMKFFIAHSKIDAKHAEEVNEMLHEVCKTQEDVDSVVAVMENSLV 208 (239)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHhcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999876 5677773 1234578888888 556667777777766665
No 307
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=28.35 E-value=1.1e+02 Score=27.62 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=51.4
Q ss_pred cceeEeeccc--eeEEeccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCee-eecChHHHHHHHHhcccccccCccc
Q 004055 292 RPLKLVYDHD--IRLGQMPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLV-TITCTAELRLAESASDSLMTKEPEA 367 (776)
Q Consensus 292 ~~vK~~~~~D--iR~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlV-Ti~s~dDL~~A~~~~~~~~~~~~~~ 367 (776)
.+|.|.+... .--+.|+++.+..+|..+|..+++.. ...+|-|.+.+|-.| .+.++ +-.++...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D-~~tL~~y~----------- 74 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDG-AKSLKDLG----------- 74 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCC-SSBTTTTT-----------
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCC-cCCHHHCC-----------
Confidence 3455555433 33455799999999999999999854 558899988766544 23222 21111111
Q ss_pred ccCCCCCcEEEEEEecCCCCCCCchh
Q 004055 368 DKSDSVGMLRLHIVDVSPEQEPPLLE 393 (776)
Q Consensus 368 ~~~~~~g~~rL~v~e~~~~~~~~~~~ 393 (776)
-..-.+|||+...|.- +.+.+
T Consensus 75 ----i~~g~~ihvvd~~p~~-~~~~d 95 (122)
T 1t0y_A 75 ----VRDGYRIHAVDVTGGN-EDFKD 95 (122)
T ss_dssp ----CCSSEEEEEEECTTCC-CC---
T ss_pred ----CCCCCEEEEEeCCCCC-CCccc
Confidence 1233689999888764 44443
No 308
>3fo3_A Eight-heme nitrite reductase; alpha protein, eight hemes C, oxidoreductase; HET: HEC PG6 PG4; 1.40A {Thioalkalivibrio nitratireducens} PDB: 3d1i_A* 3f29_A* 2zo5_A* 3gm6_A* 3lg1_A* 3lgq_A* 3mmo_A* 2ot4_A* 3uu9_A* 3rkh_A* 3sce_A* 3s7w_A* 3owm_A* 3sxq_A* 3ttb_A*
Probab=27.07 E-value=3.8e+02 Score=30.50 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHccCCchhHHHHHhHhhHHHHhhhhhhhhhhhccCCCCCC--h
Q 004055 538 GKEVVAAQLQTAYDWVKEKYSLAKE-------KYEEALLIKPDFYEGLLALGQQQFEMAKLHWSYALAKKIDLSGWD--A 608 (776)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~y~~a~~-------~ye~a~~ikpdf~e~~~a~g~q~fe~akl~w~~~~~~~~d~~~~~--s 608 (776)
+.+.+..+|..--+|+.....+|+- -+++|.. ..-=+..|+-.++...+|...|.|+.|.+ +.+. +
T Consensus 419 s~e~lk~~v~~iq~~~~~~~~~a~~~~~~li~~~~~A~~--aGa~e~~m~~a~~~~R~AQwrWD~v~Aen---s~GFHnP 493 (525)
T 3fo3_A 419 TEDQALYAIDYIKNYTHGKIVKSEYWLAKMIDLFPVAKR--AGVSEDVLNQARELHYDAHLYWEWWTAEN---SVGFHNP 493 (525)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHHHHHHHHHST---TTTTTCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHhhheeeccC---CccccCH
Confidence 3344444455555666666655552 3344433 23446788888999999999999999995 3333 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004055 609 TETLQLFDSAEEKMKTATEMWE 630 (776)
Q Consensus 609 ~~~~~~~~~a~~~~~~~~~~we 630 (776)
.|++.+...|.+.-..|.....
T Consensus 494 ~ea~r~L~~s~~~a~~A~~~l~ 515 (525)
T 3fo3_A 494 DQARESLMTSISKSKEAVSLLN 515 (525)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888888877643
No 309
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=25.92 E-value=97 Score=27.02 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 004055 36 DLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDN 71 (776)
Q Consensus 36 d~D~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~K 71 (776)
..-...++++|..|.+.|.-++.+||+..|+..+.=
T Consensus 29 ~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isY 64 (87)
T 2pmr_A 29 SDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITY 64 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 335578899999999999999999999999988743
No 310
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=25.71 E-value=71 Score=33.22 Aligned_cols=60 Identities=12% Similarity=-0.093 Sum_probs=43.0
Q ss_pred ccccccccceeEeeccce-eEEeccCCCCHHHHHHHHHhHCCCCCc--eEEEEecCCCCeeee
Q 004055 285 LEVPVRWRPLKLVYDHDI-RLGQMPVNCSFKALREIVSKRFPSSKS--VLIKYKDNDGDLVTI 344 (776)
Q Consensus 285 ~~~~~~~~~vK~~~~~Di-R~~~v~~~~~~~~L~~~v~~kF~~~~~--~~iKYkDeDGDlVTi 344 (776)
|++....+.++|++-|++ ..+.|.++++-.+|.+.|.++.+.... |-+.|.|.+|...-+
T Consensus 11 ~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wL 73 (296)
T 3qij_A 11 RENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWL 73 (296)
T ss_dssp ------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEEC
T ss_pred CCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchh
Confidence 455556689999986655 455689999999999999999996644 999999976644433
No 311
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=25.49 E-value=78 Score=29.35 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=38.4
Q ss_pred ccccceeEee-ccceeEEeccCCCCHHHHHHHHHhHCCCCCceEEEEecCCCCeeeecChHHH
Q 004055 289 VRWRPLKLVY-DHDIRLGQMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDGDLVTITCTAEL 350 (776)
Q Consensus 289 ~~~~~vK~~~-~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDGDlVTi~s~dDL 350 (776)
.+.+++||.- .--+|+-++.. |+.+|+.++.++|.....+.| +-++||..| ++||.
T Consensus 33 ~~~kPfKV~~~~Rs~k~GV~A~--SL~EL~~K~~~~l~l~~~~~l-vLeeDGT~V---ddEeY 89 (122)
T 1d4b_A 33 PPQRPFRVCDHKRTIRKGLTAA--TRQELLAKALETLLLNGVLTL-VLEEDGTAV---DSEDF 89 (122)
T ss_dssp CCCEEEEEECSSSSCEEEEEEC--CSSTHHHHHHHHHSCCSSCEE-EETTTTEEE---CSTHH
T ss_pred CCCCCEEEecCCCCeEEeEEcC--CHHHHHHHHHHHhccCCCcEE-EEEeCCcEE---echhH
Confidence 3457888873 33455555444 689999999999998656655 456699555 46666
No 312
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=25.07 E-value=86 Score=26.28 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=30.5
Q ss_pred eeEeeccceeEEe-ccCCCCHHHHHHHHHhHCCCC-CceEEEEe
Q 004055 294 LKLVYDHDIRLGQ-MPVNCSFKALREIVSKRFPSS-KSVLIKYK 335 (776)
Q Consensus 294 vK~~~~~DiR~~~-v~~~~~~~~L~~~v~~kF~~~-~~~~iKYk 335 (776)
|+|....-.+.+. ++.+.+..+|...|..+.+.. ..++|.|-
T Consensus 3 i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 3 VRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp EEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEES
T ss_pred EEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeC
Confidence 4444434455677 999999999999999998753 45667663
No 313
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=25.07 E-value=5.5e+02 Score=29.99 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=26.9
Q ss_pred hHHHHHhHhhHHHHhhhhhhhhhhhccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 004055 575 YEGLLALGQQQFEMAKLHWSYALAKKIDLSGWDATETLQLFDSAEEKMKTATE 627 (776)
Q Consensus 575 ~e~~~a~g~q~fe~akl~w~~~~~~~~d~~~~~s~~~~~~~~~a~~~~~~~~~ 627 (776)
+-.++.+-+. +-+|.-+.|+|+... .+..--+++..+..|.+.++.|..
T Consensus 247 w~~~v~~K~~-~~~A~A~y~~a~~~~---e~~k~GeaIa~L~~A~~~l~~a~~ 295 (704)
T 2xs1_A 247 VFPVLAAKHC-IMQANAEYHQSILAK---QQYYFGEEIARLQHAAELIKTVAS 295 (704)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhH---HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 334444444455442 223346778888888887777664
No 314
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=24.71 E-value=1e+02 Score=26.85 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 004055 39 SSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNA 72 (776)
Q Consensus 39 ~~~~le~A~~LkeeGn~lfqkGdyeeAle~Y~KA 72 (776)
...++++|..|.+.|.-++.+||+..|+..+.=+
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999999999999887443
No 315
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.40 E-value=95 Score=35.69 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=45.4
Q ss_pred cccceeEeeccceeEEeccCCCCHHHHHHHHHhHCCCCCc--eEEEEecCCCCeeee
Q 004055 290 RWRPLKLVYDHDIRLGQMPVNCSFKALREIVSKRFPSSKS--VLIKYKDNDGDLVTI 344 (776)
Q Consensus 290 ~~~~vK~~~~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~~--~~iKYkDeDGDlVTi 344 (776)
+.+.|+|++-|++.-+.|.++++-.+|.+.|..+++.... |-+.|.|.+|...-+
T Consensus 3 k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WL 59 (575)
T 2i1j_A 3 KSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWI 59 (575)
T ss_dssp CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEEC
T ss_pred ceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHh
Confidence 3568899998777778899999999999999999987544 999999988765433
No 316
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.99 E-value=1.6e+02 Score=32.23 Aligned_cols=31 Identities=16% Similarity=-0.062 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
-.-|+-.+|++|+..|++++|...++.++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4568888899999999999999999999864
No 317
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=23.94 E-value=3.7e+02 Score=26.98 Aligned_cols=86 Identities=20% Similarity=0.388 Sum_probs=54.9
Q ss_pred HHHHHhHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhh--------------cCCcccccchHHHHH
Q 004055 479 LGMELCSEALEETVTSEEAQNLFDKAALKFQEVAALAFFNWGNVHMCAARK--------------RIPLDESAGKEVVAA 544 (776)
Q Consensus 479 ~g~~~~~eale~~v~~~~a~~lf~~a~~kfqe~aa~a~fnwgnvh~~~ark--------------~~~~~~~~~~~~~~~ 544 (776)
-|..-|-.-|..+-..+=|++.|..--+.||.+++- |||--|.-=. -||..++..+..-.-
T Consensus 79 kgF~aCGrNL~V~pDm~fA~~fF~~LH~nFq~A~~~-----gkv~TCLlIQaLiIE~FAIaAYniYIpVAD~FARkITeg 153 (244)
T 2oc5_A 79 KGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQ-----GKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEG 153 (244)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTHHHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred hHHHHhccCCcCCCCcHHHHHHHHHHHHHHHHHHhc-----CCeeehHHHHHHHHHHHHHHHHhhccccccHHHHHHHHh
Confidence 355568899999999999999999999999998873 5555554222 234454444422222
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHc
Q 004055 545 QLQTAY-------DWVKEKYSLAKEKYEEALL 569 (776)
Q Consensus 545 ~~~~~~-------~~~~~~y~~a~~~ye~a~~ 569 (776)
-||+.| +|.++.|+..+...++|-+
T Consensus 154 VVkDEY~HLNfGe~WLk~~f~~~K~el~~ANr 185 (244)
T 2oc5_A 154 VVKDEYTHLNYGEAWLKANLESCREELLEANR 185 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 245444 4666666666665555543
No 318
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=22.96 E-value=59 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.0
Q ss_pred ceeEEeccCCCCHHHHHHHHHhHCCC
Q 004055 301 DIRLGQMPVNCSFKALREIVSKRFPS 326 (776)
Q Consensus 301 DiR~~~v~~~~~~~~L~~~v~~kF~~ 326 (776)
|-+.+.||.+.++.+|+..||++...
T Consensus 47 dk~KflVp~~~tv~qf~~~iRkrl~l 72 (118)
T 3rui_B 47 DKRKYLVPADLTVGQFVYVIRKRIML 72 (118)
T ss_dssp SCCEEEEETTSBHHHHHHHHHHHTTC
T ss_pred ccceEEcCCCCCHHHHHHHHHHHhCc
Confidence 45566799999999999999998764
No 319
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.55 E-value=88 Score=26.79 Aligned_cols=51 Identities=4% Similarity=-0.030 Sum_probs=37.2
Q ss_pred cceeEeeccc--eeEEeccCCCCHHHHHHHHHhHCCCC-CceEEEEecCCCCee
Q 004055 292 RPLKLVYDHD--IRLGQMPVNCSFKALREIVSKRFPSS-KSVLIKYKDNDGDLV 342 (776)
Q Consensus 292 ~~vK~~~~~D--iR~~~v~~~~~~~~L~~~v~~kF~~~-~~~~iKYkDeDGDlV 342 (776)
.+|+|.+... .--+.++.+.+..+|..+|..+++.. ...+|-|.+.+|-.+
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~ 61 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFY 61 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccc
Confidence 4556665443 33456899999999999999999854 558888888666544
No 320
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=22.48 E-value=2e+02 Score=24.27 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004055 124 LRRARAFDAIGKYEMAMQDVQVLLGVEPNHRDALEIARR 162 (776)
Q Consensus 124 ~~rA~ay~aLGr~deAl~d~~kAL~LdP~N~~al~~la~ 162 (776)
..+|..+...|++++|...|-+|+...|.-...+..+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 567888888899999999899999998887766655543
No 321
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=22.36 E-value=1.6e+02 Score=26.30 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=32.9
Q ss_pred cccceeEeeccce-eEEeccCCCCHHHHHHHHHhHCCCCC---ceEEEEecCCCCeee
Q 004055 290 RWRPLKLVYDHDI-RLGQMPVNCSFKALREIVSKRFPSSK---SVLIKYKDNDGDLVT 343 (776)
Q Consensus 290 ~~~~vK~~~~~Di-R~~~v~~~~~~~~L~~~v~~kF~~~~---~~~iKYkDeDGDlVT 343 (776)
+.+++||.-.++- |+-++. -|+.+|+.++.++|.... .+.| +-++||..|.
T Consensus 17 ~~kPfkV~~~~~r~k~GV~A--~SL~EL~~K~~~~l~l~~~~~~~~l-vLeeDGT~Vd 71 (100)
T 1f2r_I 17 PLKPCLLRRNHSRDQHGVAA--SSLEELRSKACELLAIDKSLTPITL-VLAEDGTIVD 71 (100)
T ss_dssp CCEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHCCCGGGCSCEE-EESSSCCBCC
T ss_pred CCCCEEEeeCCCccEEeEEc--CCHHHHHHHHHHHhccCCCCCceEE-EEeeCCcEEe
Confidence 4578888733332 333332 379999999999999742 3554 4456896663
No 322
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.63 E-value=1.8e+02 Score=32.27 Aligned_cols=30 Identities=23% Similarity=0.020 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 120 VRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 120 ~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
.-|+-.+|++|+..+++++|...+++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456666677777777777777777777654
No 323
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=21.45 E-value=3.6e+02 Score=22.97 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=40.7
Q ss_pred eccCCCCHHHHHHHHHhHCCCCCceEEEEecCCC-----CeeeecChHHHHHHHHhc
Q 004055 306 QMPVNCSFKALREIVSKRFPSSKSVLIKYKDNDG-----DLVTITCTAELRLAESAS 357 (776)
Q Consensus 306 ~v~~~~~~~~L~~~v~~kF~~~~~~~iKYkDeDG-----DlVTi~s~dDL~~A~~~~ 357 (776)
-||.+++-.+|++... +|+....+.|.+....| =+|++.+.++...|+...
T Consensus 32 nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 32 HLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp SCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 4799999999988776 67767777776654455 489999999999999765
No 324
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.84 E-value=1.9e+02 Score=31.76 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004055 119 FVRALLRRARAFDAIGKYEMAMQDVQVLLGV 149 (776)
Q Consensus 119 n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L 149 (776)
-.-|+-.+|++|+..|++++|...++.++..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3568888899999999999999999999864
No 325
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.40 E-value=1.9e+02 Score=32.26 Aligned_cols=92 Identities=3% Similarity=-0.096 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHhCC--CCC------CChH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--C-------
Q 004055 60 KDYVGALEQYDNALRLTP--KTH------PDRA----VFHSNRAACLMQMKPINYETVIAECTMALQVQP--R------- 118 (776)
Q Consensus 60 GdyeeAle~Y~KALkLdP--~~~------~d~A----~ay~n~A~cy~~LG~gdyeeAi~~~~kALeldP--~------- 118 (776)
...+.|.....++..+-- .++ |..- .+-.++-.+|++++ +..-|...+...-...+ .
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~--~~~lckni~k~i~~~~~~p~~~~~p~~ 217 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIE--SPQLCSNIFKNFQPKSMLAHFNEYQLD 217 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSS--CCTTHHHHHHTHHHHCCCSCGGGSCHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcC--CHHHHHHHHHHhccCCCCcChhhCCcc
Confidence 456778888888888622 111 1111 22334456788998 88877776654322221 1
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 004055 119 -FVRALLRRARAFDAIGKYEMAMQDVQVLLGV-EPNH 153 (776)
Q Consensus 119 -n~kAl~~rA~ay~aLGr~deAl~d~~kAL~L-dP~N 153 (776)
....+|-+|+.+...++|.+|..++..|+.. .|.+
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 2468899999999999999999999999998 7755
No 326
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=20.11 E-value=8.2e+02 Score=26.16 Aligned_cols=145 Identities=10% Similarity=0.032 Sum_probs=76.7
Q ss_pred hHHHHHHHhHHHHHhhh-ChHHHHHHHHHHHHHHHHHH-----------------HHHHhhhhhhHHhhhhhcCCccccc
Q 004055 476 LHELGMELCSEALEETV-TSEEAQNLFDKAALKFQEVA-----------------ALAFFNWGNVHMCAARKRIPLDESA 537 (776)
Q Consensus 476 l~~~g~~~~~eale~~v-~~~~a~~lf~~a~~kfqe~a-----------------a~a~fnwgnvh~~~ark~~~~~~~~ 537 (776)
|+++|+=+..-|.+..- ....|-..|..|+.-|+-+. ||...=-+..+-|.-+|-+.-+.+.
T Consensus 126 LfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~ 205 (392)
T 1zb1_A 126 LFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLNDQISS 205 (392)
T ss_dssp HHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGG
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 45666555444442211 55677777888887777554 3333334445555555555322345
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccC---CchhHHHHHhHhhHHHHhhhhhhhhhhhccCCCCCChhHHHH
Q 004055 538 GKEVVAAQLQTAYDWVKEKYSLAKEKYEEAL-LIK---PDFYEGLLALGQQQFEMAKLHWSYALAKKIDLSGWDATETLQ 613 (776)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~y~~a~~~ye~a~-~ik---pdf~e~~~a~g~q~fe~akl~w~~~~~~~~d~~~~~s~~~~~ 613 (776)
.+.+++..| ++ .+-+.|..|.+-....- .++ |..+-.++.+-+..| +|.-+.++|+.... ...--|.+.
T Consensus 206 ~k~~liAkL--a~-~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~-~A~A~y~~a~~~~e---~~k~GeaIa 278 (392)
T 1zb1_A 206 KQYTLISKL--SR-ATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFY-KSLSAYYHGLHLEE---ENRVGEAIA 278 (392)
T ss_dssp GCHHHHHHH--HH-HHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---TTCTTHHHH
T ss_pred CchhHHHHH--HH-HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---ccchHHHHH
Confidence 556665544 22 34556777765544321 022 334445555544444 34444444554422 223357888
Q ss_pred HHHHHHHHHHHHHH
Q 004055 614 LFDSAEEKMKTATE 627 (776)
Q Consensus 614 ~~~~a~~~~~~~~~ 627 (776)
.+..|.+.++.+..
T Consensus 279 ~L~~A~~~l~~a~~ 292 (392)
T 1zb1_A 279 FLDFSMQQLISSLP 292 (392)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777653
No 327
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=20.01 E-value=83 Score=29.96 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=34.9
Q ss_pred cccceeEee-ccceeEEeccCCCCHHHHHHHHHhHCCCCC---ceEEEEecCCCCeeeecChHHH
Q 004055 290 RWRPLKLVY-DHDIRLGQMPVNCSFKALREIVSKRFPSSK---SVLIKYKDNDGDLVTITCTAEL 350 (776)
Q Consensus 290 ~~~~vK~~~-~~DiR~~~v~~~~~~~~L~~~v~~kF~~~~---~~~iKYkDeDGDlVTi~s~dDL 350 (776)
+.+++||.- ..-+|+-++ .-|+.+|+.++.++|.... .+.| +-++||-.| +++|.
T Consensus 62 ~~KPfKV~d~~Rs~KkGV~--A~SL~EL~~K~~~kL~l~~~~~~~~L-vLeeDGTeV---ddEeY 120 (145)
T 1ibx_B 62 TLKPCLLRRNYSREQHGVA--ASCLEDLRSKACDILAIDKSLTPVTL-VLAEDGTIV---DDDDY 120 (145)
T ss_dssp SCCCCBCBCSSCCSBCCCC--CSSHHHHHHHHHHHHTCSCTTSCCEE-EETTTCCBC---SSHHH
T ss_pred CCccEEEecCCCCeEEeEE--cCCHHHHHHHHHHHhcCCCCccccEE-EEeeCCcEE---echhH
Confidence 345677662 222333332 2489999999999998744 4444 556799655 46776
Done!