Query 004056
Match_columns 776
No_of_seqs 476 out of 2412
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 16:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 2.8E-58 6E-63 538.3 32.9 382 7-403 153-559 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 2.6E-31 5.6E-36 298.0 17.1 233 272-507 154-419 (421)
3 cd04016 C2_Tollip C2 domain pr 99.9 4.9E-21 1.1E-25 180.7 15.4 113 285-400 2-121 (121)
4 cd08677 C2A_Synaptotagmin-13 C 99.9 4.2E-21 9.1E-26 179.7 12.0 111 273-386 2-118 (118)
5 cd08682 C2_Rab11-FIP_classI C2 99.8 4.4E-20 9.5E-25 174.3 13.2 113 287-399 1-126 (126)
6 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.9E-19 4E-24 167.0 14.5 114 286-401 1-115 (116)
7 cd08381 C2B_PI3K_class_II C2 d 99.8 9.3E-20 2E-24 171.8 12.2 113 272-387 2-122 (122)
8 cd08393 C2A_SLP-1_2 C2 domain 99.8 8.6E-20 1.9E-24 172.6 11.8 115 273-387 3-125 (125)
9 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.3E-19 7.1E-24 167.0 14.8 115 286-402 1-121 (121)
10 cd08681 C2_fungal_Inn1p-like C 99.8 2E-19 4.4E-24 167.2 12.9 115 285-400 1-118 (118)
11 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.1E-19 4.5E-24 170.2 12.9 116 272-387 2-125 (125)
12 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3.5E-19 7.7E-24 165.6 14.0 115 285-400 1-121 (121)
13 cd08375 C2_Intersectin C2 doma 99.8 5.5E-19 1.2E-23 169.8 15.0 119 281-400 11-135 (136)
14 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.4E-19 7.4E-24 169.2 13.2 109 286-396 1-125 (126)
15 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.6E-19 7.9E-24 167.3 12.9 117 272-388 3-124 (124)
16 cd04036 C2_cPLA2 C2 domain pre 99.8 5.2E-19 1.1E-23 165.2 13.7 114 287-401 2-118 (119)
17 cd08392 C2A_SLP-3 C2 domain fi 99.8 5.5E-19 1.2E-23 168.2 12.5 116 272-387 2-128 (128)
18 cd04022 C2A_MCTP_PRT_plant C2 99.8 8.1E-19 1.8E-23 165.9 13.4 116 286-401 1-126 (127)
19 cd08692 C2B_Tac2-N C2 domain s 99.8 3.7E-19 8.1E-24 170.4 11.0 99 274-372 3-108 (135)
20 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.6E-19 1.4E-23 165.4 12.2 115 273-387 4-123 (124)
21 cd04024 C2A_Synaptotagmin-like 99.8 1.2E-18 2.6E-23 163.8 13.8 115 285-400 1-128 (128)
22 cd08680 C2_Kibra C2 domain fou 99.8 7E-19 1.5E-23 166.7 12.1 114 273-386 2-124 (124)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.6E-18 3.4E-23 163.3 14.1 112 287-400 2-121 (121)
24 cd04028 C2B_RIM1alpha C2 domai 99.8 1.3E-18 2.9E-23 169.1 13.7 114 272-389 18-139 (146)
25 cd08388 C2A_Synaptotagmin-4-11 99.8 1.3E-18 2.8E-23 165.4 12.8 117 272-388 3-128 (128)
26 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.3E-18 5.1E-23 168.2 14.3 117 286-403 1-134 (150)
27 cd08389 C2A_Synaptotagmin-14_1 99.8 1.6E-18 3.4E-23 163.9 12.1 116 272-388 3-124 (124)
28 cd04030 C2C_KIAA1228 C2 domain 99.8 1.9E-18 4.2E-23 162.6 12.2 116 272-387 3-127 (127)
29 cd08386 C2A_Synaptotagmin-7 C2 99.8 3.9E-18 8.4E-23 160.2 13.6 116 273-388 4-125 (125)
30 cd04015 C2_plant_PLD C2 domain 99.8 7.3E-18 1.6E-22 166.1 15.9 116 284-401 6-158 (158)
31 cd08685 C2_RGS-like C2 domain 99.8 1.8E-18 3.8E-23 162.6 10.7 110 274-386 3-119 (119)
32 cd08395 C2C_Munc13 C2 domain t 99.8 3.6E-18 7.8E-23 160.9 12.5 102 286-388 1-112 (120)
33 cd04031 C2A_RIM1alpha C2 domai 99.8 3.4E-18 7.3E-23 160.3 12.2 114 273-387 4-125 (125)
34 cd08521 C2A_SLP C2 domain firs 99.8 3.8E-18 8.3E-23 159.5 12.5 114 273-386 2-123 (123)
35 cd08678 C2_C21orf25-like C2 do 99.8 7.8E-18 1.7E-22 159.1 14.4 113 287-403 1-122 (126)
36 cd08390 C2A_Synaptotagmin-15-1 99.8 5.4E-18 1.2E-22 158.7 13.0 116 273-388 2-123 (123)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.5E-18 2E-22 157.5 14.4 112 286-398 1-122 (123)
38 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.1E-17 4.6E-22 156.5 15.7 114 284-402 3-124 (126)
39 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.3E-17 2.8E-22 157.1 13.2 110 286-400 1-119 (121)
40 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.5E-17 3.1E-22 158.0 13.3 114 286-401 1-133 (133)
41 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.9E-17 4.1E-22 155.6 13.7 111 287-399 2-120 (121)
42 cd08377 C2C_MCTP_PRT C2 domain 99.7 3E-17 6.5E-22 152.6 14.8 112 285-400 1-118 (119)
43 cd04046 C2_Calpain C2 domain p 99.7 5.7E-17 1.2E-21 153.4 15.7 116 283-402 1-123 (126)
44 cd04044 C2A_Tricalbin-like C2 99.7 3.3E-17 7.1E-22 153.1 13.8 117 284-402 1-124 (124)
45 cd04014 C2_PKC_epsilon C2 doma 99.7 5.7E-17 1.2E-21 154.3 15.5 114 284-402 3-130 (132)
46 KOG1030 Predicted Ca2+-depende 99.7 1.7E-17 3.7E-22 162.0 10.7 97 283-381 4-101 (168)
47 cd08406 C2B_Synaptotagmin-12 C 99.7 1E-17 2.2E-22 161.2 9.0 114 273-388 3-123 (136)
48 cd04017 C2D_Ferlin C2 domain f 99.7 8.6E-17 1.9E-21 154.0 15.3 118 286-403 2-134 (135)
49 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.9E-17 4.2E-22 157.4 10.3 113 274-388 2-121 (133)
50 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4.1E-17 8.9E-22 161.4 12.8 115 274-388 4-138 (162)
51 cd08407 C2B_Synaptotagmin-13 C 99.7 1.7E-17 3.6E-22 160.1 9.5 114 272-387 2-124 (138)
52 cd04039 C2_PSD C2 domain prese 99.7 4.5E-17 9.8E-22 150.6 11.8 94 285-378 1-99 (108)
53 cd04050 C2B_Synaptotagmin-like 99.7 5.1E-17 1.1E-21 148.7 11.7 100 286-388 1-102 (105)
54 cd04043 C2_Munc13_fungal C2 do 99.7 1.4E-16 3.1E-21 149.8 14.7 114 286-402 2-122 (126)
55 cd04010 C2B_RasA3 C2 domain se 99.7 5.7E-17 1.2E-21 158.2 12.2 101 286-388 1-122 (148)
56 cd08373 C2A_Ferlin C2 domain f 99.7 1.6E-16 3.5E-21 150.1 14.4 111 291-403 2-118 (127)
57 cd08688 C2_KIAA0528-like C2 do 99.7 6.5E-17 1.4E-21 149.4 10.9 102 287-388 1-109 (110)
58 cd04027 C2B_Munc13 C2 domain s 99.7 1.7E-16 3.8E-21 150.3 14.0 109 286-398 2-127 (127)
59 cd08402 C2B_Synaptotagmin-1 C2 99.7 6E-17 1.3E-21 154.9 9.7 115 273-389 3-124 (136)
60 cd04041 C2A_fungal C2 domain f 99.7 9.6E-17 2.1E-21 148.5 10.5 101 285-388 1-108 (111)
61 cd08382 C2_Smurf-like C2 domai 99.7 2.5E-16 5.5E-21 148.4 13.3 109 287-398 2-122 (123)
62 cd08404 C2B_Synaptotagmin-4 C2 99.7 7.1E-17 1.5E-21 154.5 9.7 114 273-388 3-123 (136)
63 cd04026 C2_PKC_alpha_gamma C2 99.7 2.1E-16 4.5E-21 150.0 12.2 118 274-394 4-127 (131)
64 cd08405 C2B_Synaptotagmin-7 C2 99.7 7.2E-17 1.6E-21 154.3 8.8 114 273-388 3-123 (136)
65 cd08403 C2B_Synaptotagmin-3-5- 99.7 9.1E-17 2E-21 153.3 9.4 114 273-388 2-122 (134)
66 cd08408 C2B_Synaptotagmin-14_1 99.7 9.6E-17 2.1E-21 154.8 9.4 115 273-388 3-125 (138)
67 cd08676 C2A_Munc13-like C2 dom 99.7 1.2E-16 2.6E-21 156.8 9.3 102 280-386 23-153 (153)
68 cd08410 C2B_Synaptotagmin-17 C 99.7 1.7E-16 3.7E-21 152.1 9.7 115 273-388 2-123 (135)
69 cd00276 C2B_Synaptotagmin C2 d 99.7 2.3E-16 5E-21 149.3 9.8 116 273-390 2-124 (134)
70 cd04035 C2A_Rabphilin_Doc2 C2 99.7 7E-16 1.5E-20 144.8 12.7 114 273-386 3-123 (123)
71 cd04018 C2C_Ferlin C2 domain t 99.7 5.2E-16 1.1E-20 151.9 12.1 106 287-392 2-129 (151)
72 cd08409 C2B_Synaptotagmin-15 C 99.7 2.5E-16 5.5E-21 151.4 9.6 115 273-388 3-124 (137)
73 cd08394 C2A_Munc13 C2 domain f 99.7 1.5E-15 3.2E-20 144.0 13.6 104 285-394 2-110 (127)
74 cd04049 C2_putative_Elicitor-r 99.7 9.9E-16 2.2E-20 144.0 12.5 105 285-389 1-109 (124)
75 cd04009 C2B_Munc13-like C2 dom 99.6 5.8E-16 1.3E-20 147.9 10.7 103 274-376 5-118 (133)
76 KOG1013 Synaptic vesicle prote 99.6 4.4E-17 9.5E-22 172.2 1.7 234 273-509 81-356 (362)
77 cd04032 C2_Perforin C2 domain 99.6 1.6E-15 3.4E-20 144.4 11.7 94 281-375 24-118 (127)
78 cd04011 C2B_Ferlin C2 domain s 99.6 2E-15 4.4E-20 139.4 12.0 101 284-388 3-110 (111)
79 KOG0696 Serine/threonine prote 99.6 1.5E-16 3.3E-21 172.2 5.2 118 276-394 171-294 (683)
80 cd04051 C2_SRC2_like C2 domain 99.6 1.1E-15 2.4E-20 143.7 10.4 111 286-396 1-125 (125)
81 cd08690 C2_Freud-1 C2 domain f 99.6 4.6E-15 9.9E-20 145.7 14.8 119 285-403 4-139 (155)
82 cd04045 C2C_Tricalbin-like C2 99.6 3.8E-15 8.3E-20 140.1 13.3 107 285-394 1-109 (120)
83 cd04052 C2B_Tricalbin-like C2 99.6 3E-15 6.4E-20 138.6 12.3 100 302-402 9-110 (111)
84 cd04040 C2D_Tricalbin-like C2 99.6 4.3E-15 9.3E-20 137.4 12.7 101 287-388 1-103 (115)
85 cd08675 C2B_RasGAP C2 domain s 99.6 3.5E-15 7.5E-20 143.7 11.6 102 287-389 1-121 (137)
86 PLN03008 Phospholipase D delta 99.6 5.1E-15 1.1E-19 174.0 14.1 119 284-404 13-180 (868)
87 cd04038 C2_ArfGAP C2 domain pr 99.6 5.7E-15 1.2E-19 143.7 11.6 94 284-380 1-95 (145)
88 cd08383 C2A_RasGAP C2 domain ( 99.6 1.6E-14 3.4E-19 133.8 14.0 108 287-400 2-117 (117)
89 cd04037 C2E_Ferlin C2 domain f 99.6 1E-14 2.2E-19 137.9 11.7 115 286-402 1-120 (124)
90 cd08691 C2_NEDL1-like C2 domai 99.6 2.5E-14 5.4E-19 137.9 14.2 109 286-398 2-136 (137)
91 cd04021 C2_E3_ubiquitin_ligase 99.6 2.9E-14 6.3E-19 134.9 13.0 110 285-398 2-124 (125)
92 KOG2059 Ras GTPase-activating 99.6 9E-15 2E-19 166.3 10.4 162 285-452 5-190 (800)
93 cd04048 C2A_Copine C2 domain f 99.6 2.3E-14 5E-19 134.1 11.0 97 291-388 6-114 (120)
94 cd04013 C2_SynGAP_like C2 doma 99.5 8.6E-14 1.9E-18 135.5 15.0 113 284-403 10-141 (146)
95 PLN03200 cellulose synthase-in 99.5 3.3E-14 7.2E-19 180.3 11.1 118 283-402 1978-2101(2102)
96 cd00275 C2_PLC_like C2 domain 99.5 3.7E-13 7.9E-18 126.4 13.7 111 286-400 3-127 (128)
97 cd08686 C2_ABR C2 domain in th 99.5 2.4E-13 5.2E-18 127.4 12.3 93 287-387 1-108 (118)
98 cd08407 C2B_Synaptotagmin-13 C 99.5 3.8E-14 8.2E-19 136.8 4.7 113 391-506 1-137 (138)
99 cd04047 C2B_Copine C2 domain s 99.4 4.7E-13 1E-17 123.1 10.6 89 289-378 4-102 (110)
100 KOG1011 Neurotransmitter relea 99.4 9.3E-13 2E-17 147.7 9.0 188 285-508 295-509 (1283)
101 PF00168 C2: C2 domain; Inter 99.3 3.8E-12 8.2E-17 109.5 8.0 81 287-368 1-85 (85)
102 KOG1028 Ca2+-dependent phospho 99.3 8.6E-12 1.9E-16 140.9 10.3 113 272-386 285-404 (421)
103 cd08406 C2B_Synaptotagmin-12 C 99.3 2.3E-12 5.1E-17 124.1 4.1 110 392-505 2-134 (136)
104 cd00030 C2 C2 domain. The C2 d 99.2 6.5E-11 1.4E-15 102.8 10.9 99 287-386 1-102 (102)
105 smart00239 C2 Protein kinase C 99.2 8.5E-11 1.8E-15 103.0 10.9 94 287-381 2-99 (101)
106 cd08374 C2F_Ferlin C2 domain s 99.2 9.2E-11 2E-15 112.6 10.4 94 287-380 2-127 (133)
107 COG5038 Ca2+-dependent lipid-b 99.1 2E-10 4.2E-15 137.8 10.3 109 281-390 1036-1146(1227)
108 cd08409 C2B_Synaptotagmin-15 C 99.1 4.4E-11 9.4E-16 115.2 3.7 97 408-507 34-137 (137)
109 cd08408 C2B_Synaptotagmin-14_1 99.1 7E-11 1.5E-15 114.1 3.7 97 407-505 34-136 (138)
110 PLN02270 phospholipase D alpha 99.1 1.3E-09 2.8E-14 129.1 14.1 118 284-403 7-150 (808)
111 PLN02223 phosphoinositide phos 99.0 1.9E-09 4.1E-14 123.3 13.6 112 285-400 409-536 (537)
112 KOG1328 Synaptic vesicle prote 98.9 5E-10 1.1E-14 127.9 4.7 101 276-376 938-1049(1103)
113 PLN02952 phosphoinositide phos 98.9 8.3E-09 1.8E-13 120.1 14.1 101 284-388 469-581 (599)
114 cd08410 C2B_Synaptotagmin-17 C 98.9 5.9E-10 1.3E-14 106.9 3.3 95 408-505 34-134 (135)
115 KOG1328 Synaptic vesicle prote 98.8 1.1E-09 2.5E-14 125.0 1.9 120 282-403 111-303 (1103)
116 cd08402 C2B_Synaptotagmin-1 C2 98.8 3.7E-09 8E-14 101.2 4.1 95 407-505 34-134 (136)
117 PLN02230 phosphoinositide phos 98.8 2.9E-08 6.4E-13 115.5 12.1 101 284-388 468-580 (598)
118 PLN02222 phosphoinositide phos 98.8 6.7E-08 1.4E-12 112.3 13.7 101 284-388 451-563 (581)
119 KOG0169 Phosphoinositide-speci 98.8 3.3E-08 7.1E-13 115.3 11.0 112 286-401 617-744 (746)
120 PLN02228 Phosphoinositide phos 98.7 6.1E-08 1.3E-12 112.4 12.5 114 285-402 431-562 (567)
121 cd08403 C2B_Synaptotagmin-3-5- 98.7 8.1E-09 1.7E-13 98.6 4.0 95 407-505 33-133 (134)
122 cd08677 C2A_Synaptotagmin-13 C 98.7 1.6E-08 3.4E-13 95.3 4.9 81 407-491 30-117 (118)
123 cd08404 C2B_Synaptotagmin-4 C2 98.7 1.1E-08 2.3E-13 98.1 3.5 95 407-505 34-134 (136)
124 cd08689 C2_fungal_Pkc1p C2 dom 98.7 7.1E-08 1.5E-12 88.6 7.9 84 287-376 1-88 (109)
125 cd08405 C2B_Synaptotagmin-7 C2 98.7 1.6E-08 3.5E-13 96.7 3.8 94 408-505 35-134 (136)
126 KOG1031 Predicted Ca2+-depende 98.6 6.9E-08 1.5E-12 108.3 8.6 115 285-399 3-134 (1169)
127 KOG1264 Phospholipase C [Lipid 98.5 2.2E-07 4.8E-12 107.8 9.3 114 285-403 1065-1191(1267)
128 cd08384 C2B_Rabphilin_Doc2 C2 98.5 6.2E-08 1.3E-12 92.2 3.8 96 407-505 32-132 (133)
129 KOG0905 Phosphoinositide 3-kin 98.5 9.8E-08 2.1E-12 114.2 6.2 114 273-388 1514-1635(1639)
130 cd00276 C2B_Synaptotagmin C2 d 98.4 2.8E-07 6E-12 87.2 3.9 95 407-505 33-133 (134)
131 KOG2059 Ras GTPase-activating 98.4 5.3E-07 1.2E-11 104.0 6.8 118 285-403 131-278 (800)
132 PF10296 DUF2404: Putative int 98.3 7.3E-07 1.6E-11 80.3 5.6 83 79-165 1-85 (91)
133 PLN02352 phospholipase D epsil 98.3 2.9E-06 6.4E-11 100.9 12.0 112 284-403 9-132 (758)
134 cd08692 C2B_Tac2-N C2 domain s 98.3 7.6E-07 1.7E-11 85.9 5.1 93 409-505 35-134 (135)
135 KOG1013 Synaptic vesicle prote 98.3 9.2E-07 2E-11 94.8 5.7 109 274-384 222-337 (362)
136 KOG1326 Membrane-associated pr 98.1 1.1E-06 2.4E-11 104.5 3.3 88 285-373 613-703 (1105)
137 cd04029 C2A_SLP-4_5 C2 domain 97.9 1.4E-05 3E-10 75.9 4.7 61 407-470 35-95 (125)
138 cd08393 C2A_SLP-1_2 C2 domain 97.9 1.5E-05 3.2E-10 75.5 4.5 61 407-470 35-95 (125)
139 cd08680 C2_Kibra C2 domain fou 97.8 2E-05 4.4E-10 74.9 5.2 62 407-471 33-95 (124)
140 cd04020 C2B_SLP_1-2-3-4 C2 dom 97.8 9.4E-06 2E-10 80.6 3.1 92 407-501 46-156 (162)
141 cd08392 C2A_SLP-3 C2 domain fi 97.8 2E-05 4.2E-10 75.3 4.8 61 407-470 35-95 (128)
142 cd08381 C2B_PI3K_class_II C2 d 97.8 3.4E-05 7.5E-10 72.9 5.2 62 407-471 31-93 (122)
143 KOG1011 Neurotransmitter relea 97.7 0.00012 2.6E-09 83.9 8.5 104 284-388 1124-1237(1283)
144 PLN02964 phosphatidylserine de 97.6 5.4E-05 1.2E-09 89.5 5.3 92 281-380 50-143 (644)
145 cd04028 C2B_RIM1alpha C2 domai 97.6 9.1E-05 2E-09 72.5 5.5 56 408-469 50-106 (146)
146 KOG2060 Rab3 effector RIM1 and 97.4 0.00013 2.7E-09 79.9 3.7 104 283-388 267-379 (405)
147 KOG1327 Copine [Signal transdu 97.4 0.00089 1.9E-08 77.0 10.5 152 317-471 41-218 (529)
148 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00021 4.6E-09 63.7 4.3 96 288-385 2-102 (103)
149 cd08385 C2A_Synaptotagmin-1-5- 97.3 0.00022 4.8E-09 66.9 4.6 59 407-470 35-93 (124)
150 cd08388 C2A_Synaptotagmin-4-11 97.3 0.00036 7.8E-09 66.5 5.1 59 407-470 36-95 (128)
151 KOG1326 Membrane-associated pr 97.1 0.0001 2.2E-09 88.3 -0.0 122 275-397 195-328 (1105)
152 cd04031 C2A_RIM1alpha C2 domai 97.1 0.00069 1.5E-08 63.4 5.4 61 407-470 35-96 (125)
153 cd08685 C2_RGS-like C2 domain 97.1 0.00024 5.1E-09 67.0 2.1 60 407-470 30-89 (119)
154 cd04030 C2C_KIAA1228 C2 domain 97.1 0.00051 1.1E-08 64.5 4.3 61 407-470 35-95 (127)
155 cd08387 C2A_Synaptotagmin-8 C2 97.1 0.00057 1.2E-08 64.2 4.2 59 407-470 35-93 (124)
156 cd08683 C2_C2cd3 C2 domain fou 97.0 0.0007 1.5E-08 64.6 4.6 100 287-386 1-143 (143)
157 cd08395 C2C_Munc13 C2 domain t 97.0 0.00081 1.8E-08 63.7 4.9 62 407-469 18-80 (120)
158 cd08389 C2A_Synaptotagmin-14_1 97.0 0.00052 1.1E-08 65.0 3.4 74 391-470 2-93 (124)
159 cd08521 C2A_SLP C2 domain firs 96.9 0.00086 1.9E-08 62.5 3.7 61 407-470 34-94 (123)
160 cd08690 C2_Freud-1 C2 domain f 96.8 0.0016 3.4E-08 64.5 5.0 77 391-470 3-89 (155)
161 KOG3837 Uncharacterized conser 96.6 0.0023 4.9E-08 71.0 4.7 121 283-403 365-505 (523)
162 cd08390 C2A_Synaptotagmin-15-1 96.5 0.002 4.3E-08 60.2 3.6 60 407-471 34-93 (123)
163 cd04010 C2B_RasA3 C2 domain se 96.4 0.0079 1.7E-07 59.1 6.8 43 407-452 17-59 (148)
164 cd08386 C2A_Synaptotagmin-7 C2 96.3 0.0047 1E-07 57.9 4.8 59 407-470 35-94 (125)
165 KOG1327 Copine [Signal transdu 96.2 0.0091 2E-07 68.9 7.1 87 289-376 140-236 (529)
166 cd04009 C2B_Munc13-like C2 dom 95.9 0.0093 2E-07 57.0 4.7 60 407-469 35-98 (133)
167 cd08682 C2_Rab11-FIP_classI C2 95.7 0.02 4.4E-07 54.0 5.8 55 407-469 18-75 (126)
168 cd04035 C2A_Rabphilin_Doc2 C2 95.5 0.013 2.8E-07 54.9 3.9 61 407-470 34-95 (123)
169 cd08686 C2_ABR C2 domain in th 95.5 0.016 3.5E-07 54.9 4.2 65 397-468 2-67 (118)
170 KOG0696 Serine/threonine prote 95.5 0.012 2.5E-07 65.9 3.7 81 390-474 167-262 (683)
171 PF15627 CEP76-C2: CEP76 C2 do 95.5 0.13 2.9E-06 51.0 10.7 122 282-403 6-152 (156)
172 PF12416 DUF3668: Cep120 prote 95.3 0.14 2.9E-06 57.1 11.4 114 287-403 2-134 (340)
173 KOG1265 Phospholipase C [Lipid 95.0 0.038 8.3E-07 66.3 6.2 90 284-380 702-800 (1189)
174 cd08398 C2_PI3K_class_I_alpha 94.8 0.28 6E-06 48.9 10.9 101 285-400 8-121 (158)
175 cd08693 C2_PI3K_class_I_beta_d 94.1 0.26 5.7E-06 49.7 9.2 102 285-399 8-134 (173)
176 cd04011 C2B_Ferlin C2 domain s 94.1 0.055 1.2E-06 49.8 3.9 71 392-470 2-76 (111)
177 cd04041 C2A_fungal C2 domain f 94.0 0.091 2E-06 48.5 5.2 59 407-470 21-80 (111)
178 cd04017 C2D_Ferlin C2 domain f 93.5 0.19 4.2E-06 48.0 6.7 86 407-506 20-115 (135)
179 cd04026 C2_PKC_alpha_gamma C2 93.3 0.12 2.6E-06 48.9 4.8 58 408-469 33-90 (131)
180 cd04018 C2C_Ferlin C2 domain t 93.3 0.079 1.7E-06 52.3 3.6 83 407-498 33-129 (151)
181 KOG0905 Phosphoinositide 3-kin 93.2 0.056 1.2E-06 66.7 2.9 81 391-474 1512-1608(1639)
182 cd08383 C2A_RasGAP C2 domain ( 93.1 0.14 3E-06 47.2 4.8 81 407-496 16-102 (117)
183 cd04037 C2E_Ferlin C2 domain f 92.9 0.32 6.9E-06 45.9 7.0 85 407-499 19-107 (124)
184 cd08379 C2D_MCTP_PRT_plant C2 92.5 0.2 4.3E-06 48.0 5.1 53 407-470 22-74 (126)
185 cd08380 C2_PI3K_like C2 domain 92.4 0.64 1.4E-05 45.7 8.7 89 286-375 9-108 (156)
186 cd04022 C2A_MCTP_PRT_plant C2 92.2 0.14 3.1E-06 48.2 3.8 56 407-470 19-75 (127)
187 PF10358 NT-C2: N-terminal C2 92.0 2.3 5.1E-05 40.7 11.9 116 284-403 6-137 (143)
188 cd08691 C2_NEDL1-like C2 domai 91.8 0.26 5.6E-06 47.9 5.0 56 407-469 19-83 (137)
189 cd04039 C2_PSD C2 domain prese 91.7 0.21 4.6E-06 46.2 4.1 54 408-470 25-78 (108)
190 cd04032 C2_Perforin C2 domain 91.7 0.28 6E-06 47.0 5.0 55 407-470 46-100 (127)
191 cd08401 C2A_RasA2_RasA3 C2 dom 91.7 0.23 4.9E-06 46.8 4.4 78 407-494 20-104 (121)
192 cd04036 C2_cPLA2 C2 domain pre 91.5 0.25 5.5E-06 45.9 4.5 58 407-471 19-76 (119)
193 KOG1452 Predicted Rho GTPase-a 91.4 0.37 7.9E-06 52.4 6.0 118 280-401 46-167 (442)
194 cd08688 C2_KIAA0528-like C2 do 91.2 0.18 4E-06 46.4 3.1 56 407-470 19-75 (110)
195 cd04048 C2A_Copine C2 domain f 91.0 0.22 4.8E-06 46.5 3.6 59 407-469 19-78 (120)
196 cd04033 C2_NEDD4_NEDD4L C2 dom 90.7 0.43 9.3E-06 45.1 5.3 59 407-469 19-77 (133)
197 cd04025 C2B_RasA1_RasA4 C2 dom 90.5 0.32 6.8E-06 45.5 4.1 53 407-469 19-71 (123)
198 cd08400 C2_Ras_p21A1 C2 domain 90.3 0.41 8.9E-06 45.3 4.7 89 396-495 6-105 (126)
199 cd08373 C2A_Ferlin C2 domain f 90.2 0.53 1.2E-05 44.3 5.4 57 406-470 12-68 (127)
200 cd08397 C2_PI3K_class_III C2 d 90.0 1 2.2E-05 44.9 7.4 85 304-399 28-121 (159)
201 cd04015 C2_plant_PLD C2 domain 89.9 0.42 9.2E-06 47.3 4.7 85 405-499 54-144 (158)
202 cd08376 C2B_MCTP_PRT C2 domain 89.8 0.5 1.1E-05 43.6 4.7 54 407-470 19-72 (116)
203 cd04038 C2_ArfGAP C2 domain pr 89.7 0.58 1.3E-05 45.8 5.3 52 407-469 20-71 (145)
204 cd04050 C2B_Synaptotagmin-like 89.6 0.56 1.2E-05 42.7 4.9 54 407-470 19-72 (105)
205 cd04014 C2_PKC_epsilon C2 doma 89.5 0.68 1.5E-05 43.9 5.6 77 407-494 33-118 (132)
206 cd08678 C2_C21orf25-like C2 do 89.4 0.27 5.9E-06 46.3 2.7 56 407-471 16-71 (126)
207 cd04012 C2A_PI3K_class_II C2 d 89.3 1.3 2.9E-05 44.4 7.7 104 285-399 8-133 (171)
208 cd08687 C2_PKN-like C2 domain 89.2 3.1 6.7E-05 37.9 9.0 83 306-400 9-92 (98)
209 cd08399 C2_PI3K_class_I_gamma 89.1 3.3 7.2E-05 42.2 10.4 71 286-357 11-88 (178)
210 cd04047 C2B_Copine C2 domain s 89.0 0.43 9.3E-06 43.6 3.7 59 407-470 19-81 (110)
211 cd08378 C2B_MCTP_PRT_plant C2 88.8 0.53 1.2E-05 44.3 4.3 53 408-470 16-68 (121)
212 cd08681 C2_fungal_Inn1p-like C 88.5 0.63 1.4E-05 43.0 4.5 78 407-494 20-104 (118)
213 cd04024 C2A_Synaptotagmin-like 88.5 1.1 2.4E-05 41.8 6.1 55 406-470 21-75 (128)
214 cd08375 C2_Intersectin C2 doma 88.4 0.65 1.4E-05 44.8 4.6 53 407-469 34-86 (136)
215 cd04054 C2A_Rasal1_RasA4 C2 do 88.1 0.99 2.2E-05 42.3 5.6 53 407-469 19-71 (121)
216 cd04016 C2_Tollip C2 domain pr 87.8 0.71 1.5E-05 43.9 4.4 77 407-495 20-106 (121)
217 cd04043 C2_Munc13_fungal C2 do 87.8 0.83 1.8E-05 42.7 4.9 56 407-469 20-75 (126)
218 cd08675 C2B_RasGAP C2 domain s 86.6 0.81 1.8E-05 44.1 4.1 60 407-470 17-89 (137)
219 cd08382 C2_Smurf-like C2 domai 86.3 0.92 2E-05 42.6 4.2 52 407-469 19-70 (123)
220 cd04042 C2A_MCTP_PRT C2 domain 86.1 1 2.2E-05 42.0 4.4 54 407-470 19-72 (121)
221 cd04046 C2_Calpain C2 domain p 84.7 1.9 4E-05 40.7 5.5 52 407-469 22-73 (126)
222 KOG3532 Predicted protein kina 84.4 2.7 5.8E-05 50.0 7.5 186 115-316 146-358 (1051)
223 KOG1030 Predicted Ca2+-depende 83.9 1.7 3.7E-05 43.7 5.0 52 407-469 25-76 (168)
224 cd08676 C2A_Munc13-like C2 dom 83.8 1.7 3.6E-05 43.1 4.9 39 429-469 90-128 (153)
225 cd04019 C2C_MCTP_PRT_plant C2 83.7 1.3 2.9E-05 43.5 4.2 54 407-470 19-73 (150)
226 cd04044 C2A_Tricalbin-like C2 82.8 2.2 4.7E-05 39.5 5.0 54 408-470 23-76 (124)
227 PF00792 PI3K_C2: Phosphoinosi 82.8 4.2 9.2E-05 39.4 7.2 68 320-398 23-98 (142)
228 cd04027 C2B_Munc13 C2 domain s 82.8 1.9 4E-05 40.8 4.6 52 407-469 20-71 (127)
229 PLN03008 Phospholipase D delta 82.3 1.6 3.6E-05 53.5 5.0 90 406-506 74-173 (868)
230 cd04045 C2C_Tricalbin-like C2 82.1 2.2 4.8E-05 40.1 4.8 53 407-469 20-72 (120)
231 cd08377 C2C_MCTP_PRT C2 domain 81.6 2.2 4.9E-05 39.2 4.7 52 407-469 20-71 (119)
232 PF14429 DOCK-C2: C2 domain in 81.4 5.4 0.00012 40.4 7.7 75 317-402 59-138 (184)
233 cd08694 C2_Dock-A C2 domains f 81.4 13 0.00028 38.5 10.3 56 317-372 53-114 (196)
234 cd04052 C2B_Tricalbin-like C2 81.2 2 4.4E-05 39.5 4.2 79 407-494 11-96 (111)
235 smart00142 PI3K_C2 Phosphoinos 81.1 7.6 0.00016 35.5 7.9 71 287-357 13-91 (100)
236 cd04021 C2_E3_ubiquitin_ligase 81.1 2.2 4.7E-05 40.3 4.4 53 407-470 20-72 (125)
237 cd08394 C2A_Munc13 C2 domain f 80.4 4.4 9.4E-05 39.1 6.2 52 406-469 17-68 (127)
238 PF00168 C2: C2 domain; Inter 79.7 2.1 4.6E-05 36.1 3.5 57 407-470 18-74 (85)
239 cd04049 C2_putative_Elicitor-r 79.5 2.9 6.2E-05 39.1 4.6 82 407-496 20-110 (124)
240 cd04040 C2D_Tricalbin-like C2 79.0 2.5 5.4E-05 38.8 4.0 54 407-469 18-71 (115)
241 cd08374 C2F_Ferlin C2 domain s 78.8 1.5 3.2E-05 42.6 2.5 41 408-453 24-66 (133)
242 cd08391 C2A_C2C_Synaptotagmin_ 77.0 1.7 3.7E-05 40.0 2.3 54 407-470 26-79 (121)
243 cd08697 C2_Dock-D C2 domains f 76.2 22 0.00047 36.6 10.1 57 317-373 56-123 (185)
244 PF15625 CC2D2AN-C2: CC2D2A N- 74.3 12 0.00027 37.4 7.8 69 306-376 37-108 (168)
245 cd08695 C2_Dock-B C2 domains f 74.1 8.6 0.00019 39.6 6.6 56 317-372 53-112 (189)
246 cd08684 C2A_Tac2-N C2 domain f 73.2 0.85 1.8E-05 41.3 -0.7 64 429-492 36-103 (103)
247 cd04013 C2_SynGAP_like C2 doma 73.2 5.8 0.00013 39.1 5.0 99 394-502 11-121 (146)
248 PLN03200 cellulose synthase-in 71.7 4.2 9.2E-05 54.7 4.7 67 391-469 1979-2051(2102)
249 cd00275 C2_PLC_like C2 domain 69.7 5.6 0.00012 36.9 3.9 60 407-470 23-83 (128)
250 cd08679 C2_DOCK180_related C2 68.8 17 0.00036 36.8 7.3 56 317-373 53-115 (178)
251 cd04051 C2_SRC2_like C2 domain 68.6 8.4 0.00018 35.9 4.8 56 407-469 19-77 (125)
252 cd08696 C2_Dock-C C2 domains f 59.5 29 0.00063 35.5 7.0 57 317-373 54-118 (179)
253 KOG0694 Serine/threonine prote 59.2 3 6.6E-05 49.9 -0.1 93 305-402 27-122 (694)
254 KOG1329 Phospholipase D1 [Lipi 56.9 22 0.00047 44.1 6.5 96 306-403 138-242 (887)
255 PTZ00447 apical membrane antig 55.8 90 0.0019 35.0 10.3 112 281-399 54-171 (508)
256 PF11618 DUF3250: Protein of u 50.8 49 0.0011 31.0 6.5 91 309-400 2-104 (107)
257 KOG2419 Phosphatidylserine dec 42.7 5.8 0.00013 47.0 -1.1 75 285-360 280-358 (975)
258 smart00239 C2 Protein kinase C 42.4 20 0.00042 30.5 2.4 55 408-469 20-74 (101)
259 PF15192 TMEM213: TMEM213 fami 38.8 25 0.00054 30.7 2.3 21 18-38 45-65 (82)
260 PF11808 DUF3329: Domain of un 38.6 60 0.0013 29.3 4.9 42 13-55 13-55 (90)
261 PF06305 DUF1049: Protein of u 34.3 69 0.0015 26.7 4.4 16 44-59 46-61 (68)
262 KOG4269 Rac GTPase-activating 32.7 21 0.00046 44.1 1.3 68 283-358 757-829 (1112)
263 PF04995 CcmD: Heme exporter p 31.2 54 0.0012 25.9 3.0 10 50-59 31-40 (46)
264 COG3086 RseC Positive regulato 25.7 96 0.0021 30.7 4.2 36 17-52 91-129 (150)
265 PF10409 PTEN_C2: C2 domain of 25.5 2.9E+02 0.0063 26.1 7.6 89 286-375 5-98 (134)
266 PLN02223 phosphoinositide phos 23.1 49 0.0011 39.3 2.0 58 408-470 434-491 (537)
267 PF14316 DUF4381: Domain of un 22.0 1.2E+02 0.0027 29.5 4.3 17 70-86 65-81 (146)
268 PF14909 SPATA6: Spermatogenes 21.1 4.4E+02 0.0096 26.0 7.8 86 287-375 4-100 (140)
269 PF07162 B9-C2: Ciliary basal 21.1 8E+02 0.017 24.4 10.0 79 288-372 5-102 (168)
270 PF04120 Iron_permease: Low af 20.5 2.4E+02 0.0052 27.6 5.8 27 6-32 14-42 (132)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=2.8e-58 Score=538.30 Aligned_cols=382 Identities=25% Similarity=0.505 Sum_probs=330.1
Q ss_pred hHHHHHHHHH---HHHHHHHHhcchhHHHHHHHHhhheeeehhhHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 004056 7 SIMHHVGIVL---FLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQRRVLKDSETVRWLNHAIE 83 (776)
Q Consensus 7 ~~~~~~~~vl---~~~wllg~~g~s~~~llli~~~~l~~~~~r~~~rlr~~i~~e~~r~~~~~~~~~d~EsveWLN~iL~ 83 (776)
.|||.+++++ +++|++||++|+++.+||+++..++ +++++..|+|+.++....+++.++++..|+|+|||||+||+
T Consensus 153 ~w~qs~~i~l~~~v~Swifg~~~fs~~slffii~~~~~-vY~~~~~rv~rnird~v~~~~~~ek~~nd~ESveWLNtfL~ 231 (1227)
T COG5038 153 DWYQSVAIVLIGSVASWIFGYLGFSFASLFFIILVTMY-VYRTCIKRVRRNIRDLVQQELSEEKLENDYESVEWLNTFLQ 231 (1227)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 6999888886 6889999999999988888876544 36788889999999998888888999999999999999999
Q ss_pred HhCcccchHHHHHHhhccchHHHHhhcCCcccceeeeeeeecCCCCCEEeeEEEEecCCCCCeEEEEEEEEEeeCCCcch
Q 004056 84 KMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSA 163 (776)
Q Consensus 84 ~~Wp~~~e~~~s~~I~~~~l~~~l~~~kP~~i~~l~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vilDldis~~~~~D~si 163 (776)
++||++ |+.+|++|...+.+ .|...-|+||..++|.+||||++||||.+||.|+ +++.|.+.|||+++|++ .|++.
T Consensus 232 KfW~i~-eP~iSqqV~dqvn~-~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp-~te~dtv~mD~~~sftP-~d~sD 307 (1227)
T COG5038 232 KFWPII-EPSISQQVVDQVNQ-QLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYP-STESDTVVMDVDFSFTP-HDISD 307 (1227)
T ss_pred hheecc-ChHHHHHHHHHHHH-HHHhhcchhhhhhhhhhcccCCCCCceeeeeecC-CCCCceEEEEeeeccCc-cchhh
Confidence 999998 56678888754444 5555889999999999999999999999999996 78999999999999975 55555
Q ss_pred heehhhhhh----------cC--cc-eeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceEEEEEeecc--cc
Q 004056 164 ILAVKLRKR----------LG--FG-MWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIF--TH 228 (776)
Q Consensus 164 ~l~v~l~~r----------lG--~G-~~~~i~V~~l~~~G~lRV~L~L~~~~P~vg~v~vsFle~P~idf~lkpl~--~~ 228 (776)
+.+-+.+++ +| +| +++||.|+++.|.|++||++.|++.+||++.|++|||+.|+|||.++|++ .+
T Consensus 308 ~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~ 387 (1227)
T COG5038 308 VTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFF 387 (1227)
T ss_pred hhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCCcc
Confidence 554444443 23 45 67899999999999999999999999999999999999999999999996 35
Q ss_pred CCccccCcchHHHHHHHHHHHhhhcccCCceeeecccccCCCCCCceeeeeecCceeEEEEEEEEecCCCCCC--CCCCC
Q 004056 229 GLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD--LNGLA 306 (776)
Q Consensus 229 G~dV~~iPgLs~~I~~~I~~~l~~~LV~Pn~l~Idl~~~~s~~~~~~fsL~y~~~~GvL~V~VieA~~L~~~D--~~G~s 306 (776)
|+||+.||||++||+++|..++++|+++|+++++|+++++++.. ..+.|+|.|+|.+|++|...+ .++..
T Consensus 388 g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s--------~~aIGVv~vkI~sa~~lk~~d~~i~~~v 459 (1227)
T COG5038 388 GVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDS--------GTAIGVVEVKIKSAEGLKKSDSTINGTV 459 (1227)
T ss_pred ceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhcccc--------CCeeEEEEEEEeeccCcccccccccCCC
Confidence 89999999999999999999999999999999999999997732 468999999999999999988 68999
Q ss_pred CcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc-cee
Q 004056 307 DPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH-DMW 383 (776)
Q Consensus 307 DPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~-~~W 383 (776)
|||+.+.... ...+|++.++++||+|||+|++.+... .+.|.++|||++.++ |+.+|++.++|..|.....+ +.-
T Consensus 460 Dpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~--~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~ 537 (1227)
T COG5038 460 DPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF--TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNEL 537 (1227)
T ss_pred CceEEEEeccccCCccceeeccCCccccceEEEEeccc--CCceeEEEEeccccCCcceeeeEEechHHhhhccccccce
Confidence 9999999765 466999999999999999999999874 478999999988886 99999999999998876543 222
Q ss_pred ee-cCC-CCceEEEEEEEEEec
Q 004056 384 IP-LQN-IKIGRLHLAITVLEE 403 (776)
Q Consensus 384 ~~-L~~-~~~GeI~LsL~~~~~ 403 (776)
+. +.+ ...|+|++.+.|.|.
T Consensus 538 ~e~~~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 538 YEFLRNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred eeeeccCccceEEEEeeeeecc
Confidence 22 222 457999999988875
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-31 Score=298.01 Aligned_cols=233 Identities=24% Similarity=0.350 Sum_probs=202.1
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+...|++.|+.....|.|+|++|++|+.+|..|.+||||++++.| .+++|++.++|+||.|||+|.|.|...+ ..+
T Consensus 154 G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~ 233 (421)
T KOG1028|consen 154 GNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNR 233 (421)
T ss_pred eeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccC
Confidence 346799999999999999999999999999888999999999988 5789999999999999999999977432 457
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEEecCCC--------------
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAK-------------- 406 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~~~~~k-------------- 406 (776)
+|.+.|||+|+|+ |++||++.++|..+........|.+|... ..|+|+++++|++...+
T Consensus 234 ~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 234 VLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSM 313 (421)
T ss_pred EEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcc
Confidence 8999999999997 99999999999999888778899999752 24799999999997322
Q ss_pred ---ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec--Ceeee-eE-EEe
Q 004056 407 ---GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET-GI-WVH 479 (776)
Q Consensus 407 ---~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~--G~~~~-gv-~~~ 479 (776)
...|||||+++ ...+++++||||.+++++.||+||+.+.|++|.+++..++..+++++++ |.++. |. +++
T Consensus 314 ~~~~~~d~~Vk~~l---~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG 390 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTL---LDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILG 390 (421)
T ss_pred cCCCCCCccEEEEE---ecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEec
Confidence 24689999999 5667999999999999999999999999999999999999999999999 44433 53 344
Q ss_pred cC-CcccccccccccCCCCCccceEeecC
Q 004056 480 QP-GSEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 480 ~p-g~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
.- ++...+||.+|+.+||+|.++||...
T Consensus 391 ~~~~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 391 SDSTGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred CCCCchHHHHHHHHHhCccCceeeeEecc
Confidence 33 34446999999999999999999764
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=4.9e-21 Score=180.66 Aligned_cols=113 Identities=23% Similarity=0.392 Sum_probs=101.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|+|++|++|+..+ .|++||||++.++.++++|+++.+ ++||+|||+|.|.+... ...|.|+|||+|.++ |+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERAFTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCCCcCCc
Confidence 79999999999998877 789999999999999999999876 89999999999999752 367999999999997 89
Q ss_pred ceeEEEEecC-cccCCCccceeeecCC----CCceEEEEEEEE
Q 004056 363 TLGDCTINIS-DLRDGQRHDMWIPLQN----IKIGRLHLAITV 400 (776)
Q Consensus 363 ~LG~v~I~L~-~L~~~~~~~~W~~L~~----~~~GeI~LsL~~ 400 (776)
+||++.++|. .+..++..+.|++|.+ .+.|+|||+|+|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 5777777899999986 457999999987
No 4
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=4.2e-21 Score=179.74 Aligned_cols=111 Identities=21% Similarity=0.386 Sum_probs=98.6
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
..+|+|.|++..+.|+|+|++|++|+ . .|.+||||+++|.+ .+++|+++++|+||+|||+|.|.++..+ ...
T Consensus 2 ~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 2 KLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred eEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 35799999999999999999999998 3 46799999999975 5789999999999999999999998644 345
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeec
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
+|.|+|||+|+++ +++||++.++|+++..+...+.|..|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 8999999999997 99999999999998777777889765
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=4.4e-20 Score=174.28 Aligned_cols=113 Identities=28% Similarity=0.501 Sum_probs=100.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccC----CCCCEEEEEEeecCCCC-C
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW----DSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~----e~~~~L~V~VyD~D~~~-D 361 (776)
++|+|++|+||+.++.+|.+||||++++++++++|+++++++||+|||+|.|.+... .....|.|.|||++.++ |
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999999999999999999999999999999999999999999998752 13468999999999987 9
Q ss_pred CceeEEEEecCccc--CCCccceeeecCCC------CceEEEEEEE
Q 004056 362 DTLGDCTINISDLR--DGQRHDMWIPLQNI------KIGRLHLAIT 399 (776)
Q Consensus 362 d~LG~v~I~L~~L~--~~~~~~~W~~L~~~------~~GeI~LsL~ 399 (776)
++||++.++|.++. .+.....|++|.+. ..|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 55667899999752 3699999874
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=1.9e-19 Score=167.00 Aligned_cols=114 Identities=37% Similarity=0.612 Sum_probs=104.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
+|+|+|++|++|+.++..|.+||||+++++.++++|+++++|+||.|||+|.|.+... ..+.|.|+|||++.++ |++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence 4789999999999999889999999999999999999999999999999999998753 3578999999999986 9999
Q ss_pred eEEEEecCcccCCCccceeeecCCCCceEEEEEEEEE
Q 004056 365 GDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
|++.++|+++..+..++.|++|++. .|+|++.++|.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 9999999999988889999999974 69999999875
No 7
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=9.3e-20 Score=171.84 Aligned_cols=113 Identities=30% Similarity=0.379 Sum_probs=99.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEee-ccCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPI-STWD- 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V-~~~e- 344 (776)
+..+|++.|. .+.|.|+|++|+||++++ +|.+||||++++.+ .+++|+++++++||.|||+|.|.+ +..+
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 4567899998 799999999999999999 89999999999974 478999999999999999999987 3211
Q ss_pred CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
....|.|+|||+|.++ +++||++.++|.++..++....|++|.
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 3468999999999987 999999999999999888889999873
No 8
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.81 E-value=8.6e-20 Score=172.62 Aligned_cols=115 Identities=25% Similarity=0.448 Sum_probs=102.6
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
..+|++.|....+.|.|+|++|+||+++|.. |.+||||++++.+ .++||+++++++||+|||+|.|.+...+ .
T Consensus 3 ~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~ 82 (125)
T cd08393 3 SVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELP 82 (125)
T ss_pred EEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhC
Confidence 4578999999999999999999999999975 8999999999964 4579999999999999999999987432 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
...|.|+|||++.++ +++||++.++|.++...+....|++|+
T Consensus 83 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 83 TRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 358999999999986 899999999999998888889999985
No 9
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=3.3e-19 Score=167.02 Aligned_cols=115 Identities=29% Similarity=0.506 Sum_probs=104.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
.|+|+|++|++|+..|..|.+||||++++++ ..++|+++++++||.|||+|.|.+... .+.|.|+|||++..+ |++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcc
Confidence 3899999999999999999999999999987 688999999999999999999998753 468999999999985 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC----CceEEEEEEEEEe
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLE 402 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~~~~ 402 (776)
||++.++|+++..+...+.|++|.+. ..|+|+|.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999988889999999753 3799999998864
No 10
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=2e-19 Score=167.23 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=103.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCc
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~ 363 (776)
|.|+|+|++|++|+..+..|.+||||++++++++++|+++.+ ++||.|||+|.|.+... ..+.|.|+|||++..+|++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCcc
Confidence 689999999999999999999999999999999999999754 79999999999999853 3468999999999878999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC--CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~--~~GeI~LsL~~ 400 (776)
||++.+++.++..+.....|++|... ..|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998877778999999753 47999999986
No 11
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.81 E-value=2.1e-19 Score=170.18 Aligned_cols=116 Identities=25% Similarity=0.360 Sum_probs=102.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e- 344 (776)
+..++++.|....+.|.|+|++|+||++++. .|.+||||++++.+ .++||+++++++||+|||+|.|.+...+
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l 81 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL 81 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh
Confidence 4567899999999999999999999999875 58999999999964 3679999999999999999999987432
Q ss_pred CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
....|.|.|||++.++ +++||++.++|.++...+..+.|++|.
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 82 ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 2457999999999987 999999999999999988899999984
No 12
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=3.5e-19 Score=165.63 Aligned_cols=115 Identities=34% Similarity=0.613 Sum_probs=104.7
Q ss_pred eEEEEEEEEecCCCCCCC------CCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC
Q 004056 285 AYARVEVVEASDMKPSDL------NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~------~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~ 358 (776)
|+|+|+|++|++|+.+|. .|.+||||+++++++.++|+++++++||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 679999999999999874 37899999999999999999999999999999999998753 35789999999998
Q ss_pred CCCCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEE
Q 004056 359 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (776)
Q Consensus 359 ~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~ 400 (776)
.++++||++.++|.++..+...+.|++|++...|+|+++++|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999999988877899999998789999999875
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=5.5e-19 Score=169.82 Aligned_cols=119 Identities=29% Similarity=0.513 Sum_probs=106.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
....|.|+|+|++|++|++.|..|.+||||+++++.+.++|+++++++||.|||+|.|.+... ..+.|.|+|||++.++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCC
Confidence 457899999999999999999999999999999999999999999999999999999999753 3468999999999886
Q ss_pred -CCceeEEEEecCcccC-----CCccceeeecCCCCceEEEEEEEE
Q 004056 361 -DDTLGDCTINISDLRD-----GQRHDMWIPLQNIKIGRLHLAITV 400 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~-----~~~~~~W~~L~~~~~GeI~LsL~~ 400 (776)
|++||++.++|.++.. ......|+.|.....|+|+|++++
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999999886 234467888888889999999976
No 14
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=3.4e-19 Score=169.24 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=98.4
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC---
Q 004056 286 YARVEVVEASD---MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF--- 359 (776)
Q Consensus 286 vL~V~VieA~~---L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~--- 359 (776)
.|.|+|++|+| |+.+|..|.+||||+++++++++||+++++++||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 38999999999 89999999999999999999999999999999999999999999753 35899999999986
Q ss_pred ----CCCceeEEEEecCcccCCCccceeeecCC------CCceEEEE
Q 004056 360 ----VDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHL 396 (776)
Q Consensus 360 ----~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~------~~~GeI~L 396 (776)
+|++||++.++|..+..+.....|++|.. .+.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 69999999999999999888899999984 24677764
No 15
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.80 E-value=3.6e-19 Score=167.27 Aligned_cols=117 Identities=26% Similarity=0.522 Sum_probs=104.8
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+...+++.|+++.|.|.|+|++|+||++++..|.+||||++++.+ +.++|+++++++||.|||+|.|.+...+ ...
T Consensus 3 G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~ 82 (124)
T cd08387 3 GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKR 82 (124)
T ss_pred CEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCC
Confidence 345789999999999999999999999999999999999999954 5789999999999999999999987432 235
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||++.++ +++||++.++|+++..++..+.|++|+.
T Consensus 83 ~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08387 83 TLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124 (124)
T ss_pred EEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence 8999999999986 9999999999999998888999999873
No 16
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=5.2e-19 Score=165.21 Aligned_cols=114 Identities=29% Similarity=0.431 Sum_probs=103.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCc
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~ 363 (776)
|.|+|++|++|++.+..|.+||||++++++ .+++|+++++++||+|||+|.|.+... ..+.|.|+|||+|..+|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence 789999999999999889999999999963 678999999999999999999998753 3467999999999888999
Q ss_pred eeEEEEecCcccCCCccceeeecCCCCceEEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
||++.++|.++..+.....|++|.+...|+|++++.+.
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 99999999999999899999999988899999988653
No 17
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.79 E-value=5.5e-19 Score=168.16 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=101.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~ 345 (776)
+..+|++.|+...+.|.|+|++|+||++++.. |.+||||++++.+ .++||+++++++||+|||+|.|.+...+.
T Consensus 2 G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l 81 (128)
T cd08392 2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL 81 (128)
T ss_pred cEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence 34679999999999999999999999999875 9999999999975 37799999999999999999999875332
Q ss_pred -CCEEEEEEeecCCCC-CCceeEEEEecCcccCC---CccceeeecC
Q 004056 346 -PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ 387 (776)
Q Consensus 346 -~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~---~~~~~W~~L~ 387 (776)
...|.|.|||++.++ +++||++.|+|+++... .....||+|.
T Consensus 82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 358999999999886 99999999999998764 3568999884
No 18
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=8.1e-19 Score=165.87 Aligned_cols=116 Identities=27% Similarity=0.345 Sum_probs=102.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCC--CCCEEEEEEeecCCC--CC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHF--VD 361 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~D~~--~D 361 (776)
.|+|+|++|++|++.+..|.+||||++++++++++|+++++++||.|||+|.|.+.... ....|.|+|||.+.+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999998899999999999999999999999999999999999987432 135799999999987 59
Q ss_pred CceeEEEEecCccc-CCCccceeeecCCC-----CceEEEEEEEEE
Q 004056 362 DTLGDCTINISDLR-DGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (776)
Q Consensus 362 d~LG~v~I~L~~L~-~~~~~~~W~~L~~~-----~~GeI~LsL~~~ 401 (776)
++||++.++|.++. .+.....|++|+.. .+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987 45677899999853 489999998764
No 19
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.79 E-value=3.7e-19 Score=170.36 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=85.5
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCC-CCcceeeEEEeeccCCCCC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTL-SPKWHEEFNIPISTWDSPN 347 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTl-NP~WnEtF~f~V~~~e~~~ 347 (776)
..|+|.|.+..|.|+|+|++|+||++++..+.+||||++++.. .+.||+++++|+ ||+|||+|.|.++..+..-
T Consensus 3 l~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 3 LQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 4689999999999999999999999986667789999999843 578999999996 6999999999998654445
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINIS 372 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~ 372 (776)
.|.|+|||++..+ +++||++.++.+
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~ 108 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSD 108 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCc
Confidence 7999999999876 999999888654
No 20
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.79 E-value=6.6e-19 Score=165.39 Aligned_cols=115 Identities=31% Similarity=0.518 Sum_probs=103.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CCCE
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~ 348 (776)
..++++.|....+.|.|+|++|+||++++..|.+||||++++.+ ..++|+++++++||.|||+|.|.+...+ ....
T Consensus 4 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 83 (124)
T cd08385 4 KLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKT 83 (124)
T ss_pred EEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCE
Confidence 45788999999999999999999999999999999999999965 5789999999999999999999987422 2358
Q ss_pred EEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 349 L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
|.|+|||++.++ +++||++.++|+++..+...+.|++|+
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999999999986 899999999999998888889999986
No 21
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.2e-18 Score=163.81 Aligned_cols=115 Identities=35% Similarity=0.583 Sum_probs=102.7
Q ss_pred eEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 285 AYARVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~--~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
|+|+|+|++|++|+..+. .+.+||||+++++.++++|+++++++||.|||+|.|.+... ..+.|.|+|||++..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCCCCCC
Confidence 689999999999999998 89999999999999999999999999999999999999852 3578999999999985 9
Q ss_pred CceeEEEEecCcccC---CCccceeeecCCC-------CceEEEEEEEE
Q 004056 362 DTLGDCTINISDLRD---GQRHDMWIPLQNI-------KIGRLHLAITV 400 (776)
Q Consensus 362 d~LG~v~I~L~~L~~---~~~~~~W~~L~~~-------~~GeI~LsL~~ 400 (776)
++||++.++|.++.. ......|+.|.+. ..|+|+|+++|
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999999873 3446899999864 48999999875
No 22
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=7e-19 Score=166.69 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=101.2
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+.+|+|.|++..+.|.|+|++|+||++++..|.+||||+++|.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 45789999999999999999999999999889999999999965 3789999999999999999999987543 3
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCC-ccceeeec
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPL 386 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~-~~~~W~~L 386 (776)
...|.|+|||++.++ +++||++.|+|+++.... ....||.|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 468999999999886 999999999999997654 57889876
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.78 E-value=1.6e-18 Score=163.30 Aligned_cols=112 Identities=30% Similarity=0.513 Sum_probs=99.3
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 287 ARVEVVEASDMKPSD-LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|+|++|+||++++ .+|.+||||+++++.+ .++|+++++|+||.|||+|.|.+.. ....|.|.|||++.++ |++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~--~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR--TFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC--CCCEEEEEEEECCCCCCCce
Confidence 689999999999974 4688999999999774 6899999999999999999999985 2468999999999986 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~ 400 (776)
||++.++|+++..+...+.|++|+.. ..|+|||++++
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999988888999999853 27999999864
No 24
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=1.3e-18 Score=169.14 Aligned_cols=114 Identities=25% Similarity=0.245 Sum_probs=100.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~ 345 (776)
++..|++.|. .+.|.|+|++|+||++++ ..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+.. .
T Consensus 18 G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l--~ 93 (146)
T cd04028 18 GDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP--T 93 (146)
T ss_pred ceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC--C
Confidence 5678999984 689999999999999874 678999999999965 37899999999999999999999982 4
Q ss_pred CCEEEEEEe-ecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 346 PNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 346 ~~~L~V~Vy-D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
...|.|+|| |++.++ +++||++.|+|+++..+.....|++|.+.
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 678999999 677775 99999999999999888888999999863
No 25
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.78 E-value=1.3e-18 Score=165.36 Aligned_cols=117 Identities=26% Similarity=0.315 Sum_probs=100.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEe-eccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~ 345 (776)
++.+|++.|....+.|.|+|++|+||+.++.. |.+||||++++.+ +++||+++++++||+|||+|.|. +...+ .
T Consensus 3 G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~ 82 (128)
T cd08388 3 GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ 82 (128)
T ss_pred eEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence 35679999999999999999999999999876 8999999999964 57799999999999999999994 44222 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCC--CccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG--QRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~--~~~~~W~~L~~ 388 (776)
...|.|+|||+|.++ |++||++.++|+++... +....|++|++
T Consensus 83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 347999999999886 99999999999999765 56789998863
No 26
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.3e-18 Score=168.23 Aligned_cols=117 Identities=30% Similarity=0.501 Sum_probs=102.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
.|+|+|++|++|+++|.+|.+||||+++++++.++|+++.+ |+||+|||+|.|.+... ....|.|+|||++..+ |++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCCe
Confidence 38999999999999999999999999999999999999877 69999999999998753 3468999999999875 999
Q ss_pred eeEEEEecCcccCC----CccceeeecCCCC-----------ceEEEEEEEEEec
Q 004056 364 LGDCTINISDLRDG----QRHDMWIPLQNIK-----------IGRLHLAITVLEE 403 (776)
Q Consensus 364 LG~v~I~L~~L~~~----~~~~~W~~L~~~~-----------~GeI~LsL~~~~~ 403 (776)
||++.++|+++..+ ...+.|++|.+.. .|+|+|++++.+.
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 99999999998653 4468999998632 4999999998754
No 27
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.77 E-value=1.6e-18 Score=163.88 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=103.2
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEe-eccCC-CC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~~ 346 (776)
++.+|++.|+...+.|.|+|++|+||++++.+|.+||||++.+.+ ++++|+++++ +||+|||+|.|. +...+ ..
T Consensus 3 G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~ 81 (124)
T cd08389 3 GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN 81 (124)
T ss_pred EEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence 346799999999999999999999999999999999999998865 6789999888 999999999998 55322 34
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++.++ +++||++.++|+++..+.....|++|++
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 82 MALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 68999999999987 9999999999999998888999999974
No 28
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=1.9e-18 Score=162.57 Aligned_cols=116 Identities=25% Similarity=0.428 Sum_probs=103.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+..+++|.|+...+.|+|+|++|+||+.++..+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 3 G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~ 82 (127)
T cd04030 3 GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELK 82 (127)
T ss_pred eEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhc
Confidence 456899999999999999999999999999989999999999963 6789999999999999999999986432 2
Q ss_pred CCEEEEEEeecCCC---CCCceeEEEEecCcccCCCccceeeecC
Q 004056 346 PNVLVIEVRDKDHF---VDDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~---~Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
...|.|.|||.+.+ .+++||++.++|.++..+.....|++|.
T Consensus 83 ~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 83 RRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 36899999999985 4999999999999998888889999984
No 29
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.77 E-value=3.9e-18 Score=160.21 Aligned_cols=116 Identities=27% Similarity=0.511 Sum_probs=102.8
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC--CCC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPN 347 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~ 347 (776)
...|++.|..+.+.|.|+|++|+||+.++..+.+||||++++.+ +.++|+++++++||.|||+|.|.+...+ ...
T Consensus 4 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~ 83 (125)
T cd08386 4 RIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQR 83 (125)
T ss_pred EEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCC
Confidence 45789999999999999999999999999999999999999943 6789999999999999999999753221 235
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||++.++ +++||++.++|+++..+.....|+.|++
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred EEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 7999999999886 9999999999999998888999999863
No 30
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=7.3e-18 Score=166.07 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=102.4
Q ss_pred eeEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcc
Q 004056 284 VAYARVEVVEASDMKPSD------------------------------LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKW 332 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D------------------------------~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~W 332 (776)
.|+|.|+|++|++|+++| ..|++||||++++++. ..+|+++++++||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 589999999999999988 3567899999999874 579999999999999
Q ss_pred eeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEE
Q 004056 333 HEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVL 401 (776)
Q Consensus 333 nEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~ 401 (776)
||+|.|.+.. ..+.|.|.|||.|.+++++||++.++|+++..+...+.|++|.+. ..|+|++++.|.
T Consensus 86 nE~F~~~~~~--~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAH--YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccC--CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999999865 346899999999998899999999999999988888999999652 258999999873
No 31
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.77 E-value=1.8e-18 Score=162.59 Aligned_cols=110 Identities=23% Similarity=0.383 Sum_probs=95.6
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCE
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~ 348 (776)
..++++| ..+.|.|+|++|+||++++ .|.+||||++++.+ .++||+++++++||.|||+|.|.+...+....
T Consensus 3 l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~ 79 (119)
T cd08685 3 LKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKR 79 (119)
T ss_pred EEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCE
Confidence 3455665 5789999999999999999 88999999999976 36799999999999999999999875444457
Q ss_pred EEEEEeecCCCC--CCceeEEEEecCcccCCCccceeeec
Q 004056 349 LVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 349 L~V~VyD~D~~~--Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
|.|+|||++... +++||++.|+|.++..+...+.||.|
T Consensus 80 l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 80 LLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred EEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 999999999874 78999999999999887778999976
No 32
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=3.6e-18 Score=160.95 Aligned_cols=102 Identities=29% Similarity=0.486 Sum_probs=89.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe-C---C---eEEEeeeecCCCCCcceeeEEEeeccCC--CCCEEEEEEeec
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQL-G---P---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDK 356 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~L-g---~---~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~ 356 (776)
.|+|+|++|++|+..+ .|.+||||++++ + + ++++|+++++|+||+|||+|.|.+...+ ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 499999999998 3 1 4679999999999999999999998532 235799999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|..+ +++||++.++|.++..++..+.|++|+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9876 9999999999999999998999999975
No 33
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=3.4e-18 Score=160.31 Aligned_cols=114 Identities=32% Similarity=0.455 Sum_probs=98.4
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC--C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e--~ 345 (776)
..++++.|+...+.|.|+|++|+||+.++.++.+||||++++.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 4 ~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~ 83 (125)
T cd04031 4 RIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLK 83 (125)
T ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhC
Confidence 35688999999999999999999999999889999999999975 5789999999999999999999864321 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
...|.|+|||++..+ +++||++.++|.+.. ......||+|+
T Consensus 84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 84 ERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 468999999999987 999999999999833 33457899985
No 34
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.76 E-value=3.8e-18 Score=159.49 Aligned_cols=114 Identities=24% Similarity=0.369 Sum_probs=101.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
..+|++.|+...+.|.|+|++|+||+.++ ..+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~ 81 (123)
T cd08521 2 EIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE 81 (123)
T ss_pred eEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC
Confidence 35789999999999999999999999998 788999999999854 4689999999999999999999987432 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeec
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
...|.|+|||++.++ +++||++.++|+++..+...+.||+|
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 458999999999886 89999999999999888888999987
No 35
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=7.8e-18 Score=159.08 Aligned_cols=113 Identities=23% Similarity=0.406 Sum_probs=101.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~--~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|+|++|+||+. ..|.+||||+++++. ++++|+++++|+||.|||+|.|.+.. ..+.|.|+|||++..+ |++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCCCCCCce
Confidence 6799999999988 678999999999974 67899999999999999999999864 3468999999999987 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEEec
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEE 403 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~~~ 403 (776)
||++.++|.++..+.....|++|.+. ..|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 99999999999988878899999753 48999999999875
No 36
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.76 E-value=5.4e-18 Score=158.66 Aligned_cols=116 Identities=27% Similarity=0.401 Sum_probs=103.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~~ 347 (776)
..++++.|+...+.|.|+|++|+||+.++ ..+.+||||++++.+ +..+|+++++++||+|||+|.|.+..... ..
T Consensus 2 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~ 81 (123)
T cd08390 2 RLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRR 81 (123)
T ss_pred EEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhccc
Confidence 35789999999999999999999999998 688999999999854 56899999999999999999999874322 35
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||++..+ +++||++.++|+++.....+..|++|++
T Consensus 82 ~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 82 TLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred EEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 7999999999986 9999999999999999888899999973
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=9.5e-18 Score=157.46 Aligned_cols=112 Identities=29% Similarity=0.518 Sum_probs=100.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
.|+|+|++|++|+.++.++.+||||+++++.+.++|+++++|+||.|||+|.|.+... ....|.|+|||++..+ +++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence 3899999999999999889999999999999999999999999999999999999763 2568999999999887 9999
Q ss_pred eEEEEecCcccCCCccceeeecCC---------CCceEEEEEE
Q 004056 365 GDCTINISDLRDGQRHDMWIPLQN---------IKIGRLHLAI 398 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~---------~~~GeI~LsL 398 (776)
|++.++|+++..+...+.|+.|.+ ...|.|+|.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999988777899999975 2368888765
No 38
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.1e-17 Score=156.53 Aligned_cols=114 Identities=27% Similarity=0.433 Sum_probs=97.9
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
...|+|+|++|+||+.+ +.+||||+++++. +..+|++. +++||.|||+|.|.+...+ ...|.|.|||.+..+ |
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~-~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD-VNSFTISLSNKAKRSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC-cCEEEEEEEECCCCCCC
Confidence 35699999999999875 4789999999987 45789874 6899999999999865432 257999999999886 9
Q ss_pred CceeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEEe
Q 004056 362 DTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLE 402 (776)
Q Consensus 362 d~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~~ 402 (776)
++||++.++|+++..+...+.|++|.+. ..|+|+|+++|.+
T Consensus 78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999999988888999999753 3599999999986
No 39
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1.3e-17 Score=157.11 Aligned_cols=110 Identities=31% Similarity=0.479 Sum_probs=96.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCcee
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG 365 (776)
.|.|+|++|+||+.+ .+||||+++++.++.+|+++++++||+|||+|.|.+... ....|.|+|||++..++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceee
Confidence 389999999999987 789999999999999999999999999999999998653 356899999999988899999
Q ss_pred EEEEecCcccCCC-----ccceeeecCCCC----ceEEEEEEEE
Q 004056 366 DCTINISDLRDGQ-----RHDMWIPLQNIK----IGRLHLAITV 400 (776)
Q Consensus 366 ~v~I~L~~L~~~~-----~~~~W~~L~~~~----~GeI~LsL~~ 400 (776)
++.++|+++.... ....|++|.... .|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999987532 356899998743 6999999865
No 40
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=1.5e-17 Score=157.99 Aligned_cols=114 Identities=33% Similarity=0.469 Sum_probs=99.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-------~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~ 358 (776)
.|+|+|++|++|+.+|..|.+||||++++.+. .++|+++++|+||.|||+|.|.+... ...|.|+|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 38999999999999998899999999999653 57999999999999999999998752 4679999999999
Q ss_pred CC-CCceeEEEEecCcccCCCc------cceeeecCCC-----CceEEEEEEEEE
Q 004056 359 FV-DDTLGDCTINISDLRDGQR------HDMWIPLQNI-----KIGRLHLAITVL 401 (776)
Q Consensus 359 ~~-Dd~LG~v~I~L~~L~~~~~------~~~W~~L~~~-----~~GeI~LsL~~~ 401 (776)
++ +++||++.+++.++..+.. ...|++|++. ..|+|+|++.|+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 86 9999999999999886543 4689999852 489999999874
No 41
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=1.9e-17 Score=155.59 Aligned_cols=111 Identities=26% Similarity=0.505 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
|.|+|++|++|+++|..|.+||||+++++.. .++|+++++++||.|||.|.|.+.. ..+.|.|.|||++..+ |++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCCCCCCCEE
Confidence 7899999999999999999999999999874 5799999999999999999999874 2468999999999986 9999
Q ss_pred eEEEEecCcccCC-CccceeeecCCC-----CceEEEEEEE
Q 004056 365 GDCTINISDLRDG-QRHDMWIPLQNI-----KIGRLHLAIT 399 (776)
Q Consensus 365 G~v~I~L~~L~~~-~~~~~W~~L~~~-----~~GeI~LsL~ 399 (776)
|++.+++..+... ...+.|++|++. ..|+|++.++
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999888754 347899999763 2799998875
No 42
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=3e-17 Score=152.56 Aligned_cols=112 Identities=30% Similarity=0.569 Sum_probs=99.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|.|+|++|++|+.++..+.+||||+++++...++|+++++++||.|||+|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCce
Confidence 6899999999999999999999999999999888999999999999999999999864 3578999999999865 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~ 400 (776)
||++.++|.++..+ ...|+.|.+. ..|+|+|++.+
T Consensus 79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999998754 3579999752 38999999875
No 43
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=5.7e-17 Score=153.38 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=100.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd 362 (776)
|..+|+|+|++|++|+..|..|.+||||+++++++.++|+++++++||+|||.|.|.+.. ....|.|+|||++..+|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCC
Confidence 457899999999999999999999999999999999999999999999999999998875 356899999999988899
Q ss_pred ceeEEEEecCcccCCCccceeeecCC-------CCceEEEEEEEEEe
Q 004056 363 TLGDCTINISDLRDGQRHDMWIPLQN-------IKIGRLHLAITVLE 402 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~L~~-------~~~GeI~LsL~~~~ 402 (776)
+||++.+++..+.. ....|++|.. ...|+|.+++.+.+
T Consensus 79 ~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 79 FLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred ceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99999999987643 3456777742 34899999987764
No 44
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=3.3e-17 Score=153.06 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=100.4
Q ss_pred eeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC--eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 284 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~--~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
.|.|+|+|++|++|+..+ ..+.+||||++++++ ..++|+++++++||.|||.|.|.+.. ..+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCC
Confidence 478999999999999765 457799999999987 78999999999999999999999873 4578999999999886
Q ss_pred -CCceeEEEEecCcccCCCccc-eeeecC--CCCceEEEEEEEEEe
Q 004056 361 -DDTLGDCTINISDLRDGQRHD-MWIPLQ--NIKIGRLHLAITVLE 402 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~~~~-~W~~L~--~~~~GeI~LsL~~~~ 402 (776)
|++||++.++|.++..+.... .|..|. ++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 999999999999998876654 344443 345899999999975
No 45
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=5.7e-17 Score=154.26 Aligned_cols=114 Identities=32% Similarity=0.566 Sum_probs=101.0
Q ss_pred eeEEEEEEEEecCCCCCCCC----------CCCCcEEEEEeCCeE-EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPSDLN----------GLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~----------G~sDPYVkv~Lg~~~-~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
.|.|+|+|++|++|+..|.. |.+||||+++++++. .+|+++++|+||.|||+|.|.+.. ...|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 47899999999999988863 689999999998854 699999999999999999999973 4689999
Q ss_pred EeecCCCC-CCceeEEEEecCcccC--CCccceeeecCCCCceEEEEEEEEEe
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~--~~~~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
|||.+..+ +++||++.++|.++.. +...+.|++|+ ..|+|+++++|..
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 99998876 8999999999999887 56689999998 4799999998864
No 46
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=161.99 Aligned_cols=97 Identities=34% Similarity=0.569 Sum_probs=89.8
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
..|.|+|+|++|.||..+|..+++||||.+.+++++.||+++.+++||+|||.|.|.+.+. ...|.+.|||+|.++ |
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 5799999999999999999889999999999999999999999999999999999999863 468999999999998 9
Q ss_pred CceeEEEEecCcccCCCccc
Q 004056 362 DTLGDCTINISDLRDGQRHD 381 (776)
Q Consensus 362 d~LG~v~I~L~~L~~~~~~~ 381 (776)
|+||.++|+|..+...+...
T Consensus 82 D~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cccceeeeccHHHHHHhhhh
Confidence 99999999999988665443
No 47
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.72 E-value=1e-17 Score=161.17 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=97.7
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
..+|+|.|.+..+.|.|+|++|+||+.+|..|.+||||++++.+ .+.||+++++++||+|||+|.|.++..+ ..
T Consensus 3 ~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~ 82 (136)
T cd08406 3 EILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQD 82 (136)
T ss_pred EEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCC
Confidence 46799999999999999999999999999999999999999965 2668999999999999999999987533 34
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||+|.++ +++||++.++... .+...+.|..+..
T Consensus 83 ~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 83 LSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred cEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 57999999999886 9999999997664 4555677876654
No 48
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=8.6e-17 Score=153.96 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=99.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccC--------CCCCEEEEEEeecC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW--------DSPNVLVIEVRDKD 357 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~--------e~~~~L~V~VyD~D 357 (776)
.|+|+|++|++|+++|..|.+||||+++++.++++|+++++|+||.|||+|.|.+... +....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999999999999999999999999999999999999999999975321 11257999999999
Q ss_pred CCC-CCceeEEEE-ecCcccC---CCccceeeecCC--CCceEEEEEEEEEec
Q 004056 358 HFV-DDTLGDCTI-NISDLRD---GQRHDMWIPLQN--IKIGRLHLAITVLEE 403 (776)
Q Consensus 358 ~~~-Dd~LG~v~I-~L~~L~~---~~~~~~W~~L~~--~~~GeI~LsL~~~~~ 403 (776)
..+ |++||++.+ ++..+.. .....+|++|.. ...|+|++++++.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 987 899999987 4444443 456789999974 348999999999864
No 49
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.72 E-value=1.9e-17 Score=157.41 Aligned_cols=113 Identities=29% Similarity=0.445 Sum_probs=98.4
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
..++|.|....+.|.|+|++|+||+++|..|.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ...
T Consensus 2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~ 81 (133)
T cd08384 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKK 81 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCC
Confidence 4688999999999999999999999999999999999999964 4689999999999999999999987432 235
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||+|..+ +++||++.+++.. .+.....|+++..
T Consensus 82 ~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 82 TLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 8999999999886 9999999999985 3455678988754
No 50
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.72 E-value=4.1e-17 Score=161.43 Aligned_cols=115 Identities=21% Similarity=0.294 Sum_probs=99.4
Q ss_pred ceeeeeecC------------ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeE
Q 004056 274 NWFSVDVKE------------PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEF 336 (776)
Q Consensus 274 ~~fsL~y~~------------~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF 336 (776)
..|++.|.+ +.|.|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|+||.|||+|
T Consensus 4 l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f 83 (162)
T cd04020 4 LKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTF 83 (162)
T ss_pred EEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEE
Confidence 457778877 5699999999999999999999999999999843 67899999999999999999
Q ss_pred EEeeccCC--CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 337 NIPISTWD--SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 337 ~f~V~~~e--~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.+...+ ....|.|+|||++.++ +++||++.+++.++......+.|+.|.+
T Consensus 84 ~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 84 VYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99854221 2347999999999987 9999999999999988777889998864
No 51
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.72 E-value=1.7e-17 Score=160.09 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=96.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~--~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e 344 (776)
+...|+|.|.+..+.|.|+|++|+||+++|. .+.+||||++++.+ .+.||+++++++||+|||+|.|.++..+
T Consensus 2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~ 81 (138)
T cd08407 2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSEL 81 (138)
T ss_pred CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHH
Confidence 3467999999999999999999999999983 35589999999976 3679999999999999999999998533
Q ss_pred C-CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 345 S-PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 345 ~-~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
. ...|.|+|||+|.++ +++||++.+++.. .+...+.|..+.
T Consensus 82 L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 82 LAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred hCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 2 457999999999987 9999999999975 445566776653
No 52
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.71 E-value=4.5e-17 Score=150.59 Aligned_cols=94 Identities=23% Similarity=0.366 Sum_probs=83.6
Q ss_pred eEEEEEEEEecCCCCCCCC----CCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 285 AYARVEVVEASDMKPSDLN----GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~----G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
|+|.|+|++|++|++.+.. +.+||||+++++.+++||+++++++||+|||+|.|.+...+....|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 7899999999999998632 358999999999999999999999999999999999875444468999999999987
Q ss_pred -CCceeEEEEecCcccCCC
Q 004056 361 -DDTLGDCTINISDLRDGQ 378 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~ 378 (776)
|++||++.++|++|..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 999999999999988654
No 53
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.71 E-value=5.1e-17 Score=148.73 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=90.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCcee
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG 365 (776)
.|.|+|++|++|+..+..+.+||||+++++++.++|+++++|+||.|||+|.|.+... ..+.|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCccE
Confidence 3899999999999999889999999999999999999999999999999999999864 34689999999987 89999
Q ss_pred EEEEecCcccCCC--ccceeeecCC
Q 004056 366 DCTINISDLRDGQ--RHDMWIPLQN 388 (776)
Q Consensus 366 ~v~I~L~~L~~~~--~~~~W~~L~~ 388 (776)
++.++|.++.... ..+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999987654 5789999986
No 54
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.71 E-value=1.4e-16 Score=149.82 Aligned_cols=114 Identities=28% Similarity=0.495 Sum_probs=99.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
.|+|+|++|++|+..+..|.+||||++++.+ ..++|+++++++||.|||+|.|.+... ....|.|+|||++..+ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 5899999999999999999999999999864 468999999999999999999999863 3568999999999885 9
Q ss_pred CceeEEEEecCcccC---CCccceeeecCCCCceEEEEEEEEEe
Q 004056 362 DTLGDCTINISDLRD---GQRHDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 362 d~LG~v~I~L~~L~~---~~~~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
++||++.++|..+.. +...+.|++|.+ .|+|++.+++..
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEee
Confidence 999999999997643 346789999985 799999998865
No 55
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=5.7e-17 Score=158.17 Aligned_cols=101 Identities=30% Similarity=0.360 Sum_probs=87.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeecc------------C-C-CC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST------------W-D-SP 346 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~------------~-e-~~ 346 (776)
.|.|+|++|+||+. .+|.+||||++++.+ ++++|+++++|+||+|||+|.|.+.. . + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 578999999999976 67899999999999999999999841 1 1 12
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCC-CccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG-QRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~-~~~~~W~~L~~ 388 (776)
..|.|.|||++..+ |++||++.|+|..+..+ .....||+|++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 47999999999886 99999999999999987 67789999975
No 56
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.6e-16 Score=150.09 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=99.7
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccC-CCCCEEEEEEeecCCCC-CCceeEEE
Q 004056 291 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV-DDTLGDCT 368 (776)
Q Consensus 291 VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~-e~~~~L~V~VyD~D~~~-Dd~LG~v~ 368 (776)
|++|++|+. ..|.+||||+++++..+++|+++++++||+|||+|.|.+... ...+.|.|+|||++..+ |++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999998 678999999999999999999999999999999999999753 24578999999999886 89999999
Q ss_pred EecCcccCCCccceeeecCCC----CceEEEEEEEEEec
Q 004056 369 INISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLEE 403 (776)
Q Consensus 369 I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~~~~~ 403 (776)
++|+++..+.....|++|.+. ..|+|+++++|.+.
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 999999988888999999742 26899999999987
No 57
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=6.5e-17 Score=149.36 Aligned_cols=102 Identities=27% Similarity=0.521 Sum_probs=90.7
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcc-eeeEEEeeccCC-CCCEEEEEEeecCCCC-CC
Q 004056 287 ARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKW-HEEFNIPISTWD-SPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~~~~kTkvikkTlNP~W-nEtF~f~V~~~e-~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|++|++|+.++. .|.+||||+++++++++||+++++++||.| ||+|.|.+...+ ..+.|.|+|||++.++ ++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 789999999999999999999999999999 999999997533 2368999999999986 89
Q ss_pred ceeEEEEecCcccC---CCccceeeecCC
Q 004056 363 TLGDCTINISDLRD---GQRHDMWIPLQN 388 (776)
Q Consensus 363 ~LG~v~I~L~~L~~---~~~~~~W~~L~~ 388 (776)
+||++.++|.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999987 345789999864
No 58
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=1.7e-16 Score=150.28 Aligned_cols=109 Identities=32% Similarity=0.517 Sum_probs=95.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC------
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF------ 359 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~------ 359 (776)
.|+|+|++|++|+.+|..|.+||||+++++.+.++|+++++++||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 5899999999999999999999999999998899999999999999999999988642 46899999999852
Q ss_pred ------CCCceeEEEEecCcccCCCccceeeecCCC-----CceEEEEEE
Q 004056 360 ------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAI 398 (776)
Q Consensus 360 ------~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL 398 (776)
.+++||++.+++.++. ...+.|+.|++. ..|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 4999999999999875 346799999852 278888864
No 59
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.69 E-value=6e-17 Score=154.89 Aligned_cols=115 Identities=25% Similarity=0.412 Sum_probs=98.1
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
...+++.|.+..|.|.|+|++|++|+.++.+|.+||||++++.+ .+++|+++++++||.|||+|.|.+...+. .
T Consensus 3 ~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~ 82 (136)
T cd08402 3 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQK 82 (136)
T ss_pred EEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCC
Confidence 35789999999999999999999999999999999999999953 46789999999999999999999874322 2
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
..|.|+|||++.++ |++||++.+++... +.....|+++...
T Consensus 83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 83 VHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 47999999999987 89999999999863 4456778877543
No 60
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=9.6e-17 Score=148.46 Aligned_cols=101 Identities=27% Similarity=0.531 Sum_probs=88.0
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC--CCCEEEEEEeecCC
Q 004056 285 AYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDH 358 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~D~ 358 (776)
|+|+|+|++|++|+..|.. |.+||||++++.+ ..++|+++++|+||.|||+|.|.+...+ ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 9999999999854 5689999999999999999999886432 24689999999999
Q ss_pred CC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 359 FV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 359 ~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
++ |++||++.++|.++.. ...|++++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCcccc
Confidence 87 9999999999999983 457887763
No 61
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.69 E-value=2.5e-16 Score=148.38 Aligned_cols=109 Identities=25% Similarity=0.447 Sum_probs=94.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC-CeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC---CC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV---DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg-~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~---Dd 362 (776)
|+|+|++|++|+.++..|.+||||+++++ .+.++|+++++++||.|||+|.|.+.. .+.|.|+|||++.++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 79999999999999999999999999996 578999999999999999999999974 478999999999875 47
Q ss_pred ceeEEEEecCcccCCC-ccceeeecCCCC-------ceEEEEEE
Q 004056 363 TLGDCTINISDLRDGQ-RHDMWIPLQNIK-------IGRLHLAI 398 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~-~~~~W~~L~~~~-------~GeI~LsL 398 (776)
+||++.+++.++.... ....|++|+... .|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999987544 347799996422 67777765
No 62
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.69 E-value=7.1e-17 Score=154.51 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=98.9
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
..++++.|....+.|.|+|++|+||+.+|..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ..
T Consensus 3 ~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~ 82 (136)
T cd08404 3 ELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELED 82 (136)
T ss_pred eEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCC
Confidence 45788999999999999999999999999999999999999854 3678999999999999999999987432 23
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||+|.++ +++||++.+++.. .+.....|+.|..
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 83 ISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 57999999999987 9999999999998 3556788998864
No 63
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=2.1e-16 Score=149.96 Aligned_cols=118 Identities=38% Similarity=0.566 Sum_probs=102.9
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCE
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~ 348 (776)
..+++.|.. +.|+|+|++|++|+..+..+.+||||++++.+ ..++|++++++.||.|||+|.|.+...+..+.
T Consensus 4 ~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~ 81 (131)
T cd04026 4 IYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRR 81 (131)
T ss_pred EEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCE
Confidence 345666765 89999999999999998889999999999963 68899999999999999999999875434568
Q ss_pred EEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEE
Q 004056 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (776)
Q Consensus 349 L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (776)
|.|+|||++..+ +++||++.++|.++... ..+.|++|.+.+.|+.
T Consensus 82 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 82 LSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred EEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 999999999876 99999999999999854 6789999999888874
No 64
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=7.2e-17 Score=154.34 Aligned_cols=114 Identities=26% Similarity=0.398 Sum_probs=97.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
..++++.|....+.|.|+|++|+||+.++..|.+||||++++.+ .+++|+++++++||.|||+|.|.+.... ..
T Consensus 3 ~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~ 82 (136)
T cd08405 3 ELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRE 82 (136)
T ss_pred EEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCC
Confidence 45789999999999999999999999999999999999999842 4679999999999999999999986322 23
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++.++ +++||++.+++.+. +...+.|++|..
T Consensus 83 ~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 83 TTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 57999999999987 99999999999976 444567776653
No 65
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.68 E-value=9.1e-17 Score=153.26 Aligned_cols=114 Identities=25% Similarity=0.436 Sum_probs=96.8
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
.++|++.|.+..+.|+|+|++|++|++++..|.+||||++++.+ .+++|+++++++||.|||+|.|.+..... .
T Consensus 2 ~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~ 81 (134)
T cd08403 2 ELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDN 81 (134)
T ss_pred eEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCC
Confidence 35789999999999999999999999999999999999999853 36799999999999999999999864222 2
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++..+ +++||++.+++. ..+.....|+.+..
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 46999999999987 999999999987 33445677887643
No 66
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=9.6e-17 Score=154.75 Aligned_cols=115 Identities=19% Similarity=0.349 Sum_probs=97.8
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+..++|.|+...+.|.|+|++|+||+.++..|.+||||++++.+ .++||+++++++||+|||+|.|.+...+ .
T Consensus 3 ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 3 ELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred eEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 45789999999999999999999999999999999999999964 2579999999999999999999998533 3
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
...|.|.|||++.++ +++||++.+++..... ...+.|..+..
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 458999999999886 9999999999875432 23567877653
No 67
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.67 E-value=1.2e-16 Score=156.76 Aligned_cols=102 Identities=32% Similarity=0.559 Sum_probs=90.6
Q ss_pred ecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----------------------------eEEEeeeecCCCCC
Q 004056 280 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----------------------------YRFRTKTQRKTLSP 330 (776)
Q Consensus 280 y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----------------------------~~~kTkvikkTlNP 330 (776)
+.++.+.|.|+|++|+||+++|.+|.+||||++++.+ ..++|+++++|+||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 4678999999999999999999999999999999864 23789999999999
Q ss_pred cceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeec
Q 004056 331 KWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
.|||+|.|.+... ..+.|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 103 ~WnE~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999999753 3568999999998 9999999999999984 457999987
No 68
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.67 E-value=1.7e-16 Score=152.11 Aligned_cols=115 Identities=21% Similarity=0.294 Sum_probs=95.2
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
..+++|.|.+..|.|.|+|++|++|+.+|..|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+. .
T Consensus 2 ~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~ 81 (135)
T cd08410 2 ELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELEN 81 (135)
T ss_pred cEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCC
Confidence 35789999999999999999999999999999999999999843 46799999999999999999999864322 2
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||+|..+ +++||++.+....... ...+.|..|.+
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 47999999999886 9999999876533322 23577887765
No 69
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.66 E-value=2.3e-16 Score=149.32 Aligned_cols=116 Identities=27% Similarity=0.417 Sum_probs=101.5
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
+.++++.|....+.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||.|||+|.|.+.... ..
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~ 81 (134)
T cd00276 2 ELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81 (134)
T ss_pred eEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence 35788999999999999999999999999889999999999965 3679999999999999999999987532 24
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (776)
..|.|+|||.+.++ +++||++.++|++ .+...+.|++|....
T Consensus 82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 82 VSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred cEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 68999999999876 9999999999999 566789999998654
No 70
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.66 E-value=7e-16 Score=144.81 Aligned_cols=114 Identities=32% Similarity=0.420 Sum_probs=98.5
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeecc-CC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST-WD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~-~e-~ 345 (776)
..++++.|++..+.|+|+|++|++|++.+..+.+||||++++.+ ..++|+++++++||.|||+|.|.... .+ .
T Consensus 3 ~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~ 82 (123)
T cd04035 3 TLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQ 82 (123)
T ss_pred EEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhC
Confidence 45788999999999999999999999999889999999999843 47899999999999999999996332 11 2
Q ss_pred CCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeec
Q 004056 346 PNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
...|.|+|||++.+++++||++.++|+++..+..++.|+.|
T Consensus 83 ~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 83 RKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 35899999999988899999999999999988777777654
No 71
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=5.2e-16 Score=151.90 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=90.0
Q ss_pred EEEEEEEecCCCCCCCCC--------------CCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 287 ARVEVVEASDMKPSDLNG--------------LADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G--------------~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
|.|+|++|++|+.+|.++ .+||||++.+++++.+|+++++++||+|||+|.|.+......+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998543 689999999999999999999999999999999997644445789999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCc-------cceeeecCCCCce
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQR-------HDMWIPLQNIKIG 392 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~-------~~~W~~L~~~~~G 392 (776)
|||+|..+ |++||++.++|.++...+. ...|+.|-+..+|
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 99999985 9999999999999876542 2567777654444
No 72
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.66 E-value=2.5e-16 Score=151.42 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=98.6
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
...++|.|.+..+.|.|+|++|+||++.+ .+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+. .
T Consensus 3 ~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~ 81 (137)
T cd08409 3 DIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDT 81 (137)
T ss_pred EEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCc
Confidence 35688999999999999999999999998 78899999999865 36799999999999999999999974332 3
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++..+ +++||++.++......+...+.|..+..
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 58999999999876 9999999999776666666778877654
No 73
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.5e-15 Score=144.04 Aligned_cols=104 Identities=25% Similarity=0.360 Sum_probs=88.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCce
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~L 364 (776)
+.|.|+|++|++|+..+ ..||||++++++++.+|++.++ .||.|||+|.|.+... ...|.|+|||+|..+||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGLIWDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCCcCCCce
Confidence 67999999999997654 4599999999999999999988 4999999999999753 3459999999998889999
Q ss_pred eEEEEecCcccCCCcc--ceeeecCC---CCceEE
Q 004056 365 GDCTINISDLRDGQRH--DMWIPLQN---IKIGRL 394 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~--~~W~~L~~---~~~GeI 394 (776)
|++.++|+++..+... ..||+|.+ .+.|++
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 9999999999876554 89999985 234554
No 74
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=9.9e-16 Score=143.96 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=94.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCC--CCCEEEEEEeecCCCC-
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~D~~~- 360 (776)
|.|.|+|++|++|+..+..+.+||||+++++.+.++|+++++ ++||.|||+|.|.+.... ..+.|.|+|||.+.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999998899999999999988899999875 999999999999998642 2468999999999986
Q ss_pred CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 361 DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
+++||++.++|.++..++..+.|+.|++.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999988888999999874
No 75
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.65 E-value=5.8e-16 Score=147.86 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=91.8
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcceeeEEEeeccCC--
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD-- 344 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------~~~kTkvikkTlNP~WnEtF~f~V~~~e-- 344 (776)
..+++.|....+.|+|+|++|++|+.++..|.+||||++++.+ ..++|+++++|+||+|||+|.|.+...+
T Consensus 5 l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~ 84 (133)
T cd04009 5 LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCS 84 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcc
Confidence 4678899999999999999999999999889999999999963 4789999999999999999999987421
Q ss_pred -CCCEEEEEEeecCCCC-CCceeEEEEecCcccC
Q 004056 345 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (776)
Q Consensus 345 -~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~ 376 (776)
....|.|+|||++.++ +++||++.++|+++..
T Consensus 85 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 85 VEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2358999999999987 9999999999999874
No 76
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.4e-17 Score=172.21 Aligned_cols=234 Identities=21% Similarity=0.259 Sum_probs=184.5
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC--C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e--~ 345 (776)
..||.+.|......+.++|..|++|++++.++..|||+++.+++ .+++|++..+++||.|||+-.......+ .
T Consensus 81 ~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 81 ALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred chhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 46899999999999999999999999999999999999999987 4689999999999999997665533211 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc--ceeeecCC----------CCceEEEEEEEEEec---------
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN----------IKIGRLHLAITVLEE--------- 403 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~--~~W~~L~~----------~~~GeI~LsL~~~~~--------- 403 (776)
.+.+++.|+|.+.+. .+++|+..++|..+...+.. ..|+.-.- ..+|+|.+++.|...
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~i 240 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTII 240 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEE
Confidence 357899999999987 89999999999988876543 33432211 247999988876543
Q ss_pred --------CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec-C-eee
Q 004056 404 --------SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE-G-QQE 473 (776)
Q Consensus 404 --------~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~-G-~~~ 473 (776)
..+..+|||++..+ ..+.++.-||||.++|++.||.|++.++++.+..++......+.+.+++ | ...
T Consensus 241 Rc~~l~ssDsng~sDpyvS~~l---~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d 317 (362)
T KOG1013|consen 241 RCSHLASSDSNGYSDPYVSQRL---SPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSND 317 (362)
T ss_pred EeeeeeccccCCCCCccceeec---CCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCcc
Confidence 23345899999988 3566777889999999999999999999999888888777777777776 3 222
Q ss_pred e--eEEE-ecCCcccccccccccCCCCCccceEeecCCc
Q 004056 474 T--GIWV-HQPGSEVAQTWEPRKGKNRRLDTLVRRVPNG 509 (776)
Q Consensus 474 ~--gv~~-~~pg~~~~~~W~~~~~~~r~~~~q~~~~~~~ 509 (776)
. |+-. ...-+++..||-.++..++.+...||++.+.
T Consensus 318 ~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 318 SIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred CCCcccccccccchhhcCccccccccccccccccccccc
Confidence 2 2221 1222356799999999999999999999865
No 77
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=1.6e-15 Score=144.44 Aligned_cols=94 Identities=27% Similarity=0.342 Sum_probs=83.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
....|.|+|+|++|++|+. +..|.+||||+|++++++++|+++++++||+|||+|.|........+.|.|+|||++.++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4567999999999999984 677899999999999999999999999999999999997543334678999999999986
Q ss_pred -CCceeEEEEecCccc
Q 004056 361 -DDTLGDCTINISDLR 375 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~ 375 (776)
|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 999999999999665
No 78
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.63 E-value=2e-15 Score=139.42 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=87.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCC---CCCEEEEEEeecCCCC
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e---~~~~L~V~VyD~D~~~ 360 (776)
...|+|+|++|++|+ +|.+||||++++++++++|+++++++||.|||+|.|.+.... ....|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 357999999999998 578999999999999999999999999999999999975322 1357999999999886
Q ss_pred -CCceeEEEEecCcccCCC---ccceeeecCC
Q 004056 361 -DDTLGDCTINISDLRDGQ---RHDMWIPLQN 388 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~---~~~~W~~L~~ 388 (776)
+++||++.++|+++..+. ....|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999997653 3578999864
No 79
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.5e-16 Score=172.19 Aligned_cols=118 Identities=34% Similarity=0.517 Sum_probs=104.2
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEE
Q 004056 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (776)
Q Consensus 276 fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~ 350 (776)
.-++..-....|+|+|.+|+||.+||.+|.+||||++.+-| .+++|++++.||||+|||+|+|.+...+..+.|.
T Consensus 171 l~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRls 250 (683)
T KOG0696|consen 171 LYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLS 250 (683)
T ss_pred EEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeE
Confidence 33444556788999999999999999999999999999976 4789999999999999999999998777778999
Q ss_pred EEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEE
Q 004056 351 IEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (776)
Q Consensus 351 V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (776)
|+|||+|+.+ +||+|...+.+++|... ..+.||.|.+...|+-
T Consensus 251 iEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGEy 294 (683)
T KOG0696|consen 251 IEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGEY 294 (683)
T ss_pred EEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCce
Confidence 9999999997 99999999999999864 4789999988777763
No 80
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.1e-15 Score=143.68 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=95.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeec-CCCCCcceeeEEEeeccCC---CCCEEEEEEeecCCCC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQR-KTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvik-kTlNP~WnEtF~f~V~~~e---~~~~L~V~VyD~D~~~ 360 (776)
.|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+...+ ....|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999988 889999975 5899999999999997642 1568999999999865
Q ss_pred -CCceeEEEEecCcccCCCc-----cceeeecCC---CCceEEEE
Q 004056 361 -DDTLGDCTINISDLRDGQR-----HDMWIPLQN---IKIGRLHL 396 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~~-----~~~W~~L~~---~~~GeI~L 396 (776)
|++||++.++|.++..+.. ...|+.|.. +..|.|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9999999999999987654 368999975 34788764
No 81
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=4.6e-15 Score=145.73 Aligned_cols=119 Identities=22% Similarity=0.241 Sum_probs=96.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcceeeEEEeeccCC-------CCCEEEEE
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWD-------SPNVLVIE 352 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L-----g~~~~kTkvikkTlNP~WnEtF~f~V~~~e-------~~~~L~V~ 352 (776)
+.|.|....+.+|++.+.++.+||||++++ .++++||+++++|+||+|||+|.|.+.... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445555555555888888889999999997 237999999999999999999999996431 13579999
Q ss_pred EeecCCC--CCCceeEEEEecCcccCCCccceeeecCC-C--CceEEEEEEEEEec
Q 004056 353 VRDKDHF--VDDTLGDCTINISDLRDGQRHDMWIPLQN-I--KIGRLHLAITVLEE 403 (776)
Q Consensus 353 VyD~D~~--~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~-~--~~GeI~LsL~~~~~ 403 (776)
|||++.+ +|++||++.++|+.+........|++|.. . ..|+|++++...+.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 9999986 49999999999999988777778999874 2 37999999988764
No 82
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=3.8e-15 Score=140.08 Aligned_cols=107 Identities=30% Similarity=0.402 Sum_probs=94.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|+|++|++|+..+..|.+||||+++++. ..++|++++++.||.|||+|.|.+... .+.|.|+|||++.++ |+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 68999999999999999899999999999976 678999999999999999999988753 468999999999987 89
Q ss_pred ceeEEEEecCcccCCCccceeeecCCCCceEE
Q 004056 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (776)
+||++.++|.++..+ ..+.||.|-+...+.+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~ 109 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL 109 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence 999999999999876 5678888876555543
No 83
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=3e-15 Score=138.61 Aligned_cols=100 Identities=24% Similarity=0.445 Sum_probs=88.3
Q ss_pred CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccC-CCc
Q 004056 302 LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD-GQR 379 (776)
Q Consensus 302 ~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~-~~~ 379 (776)
.+|.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ....|.|.|||.+.+++++||++.++|+++.. ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 578999999999987 468999999999999999999999753 34679999999998889999999999999854 345
Q ss_pred cceeeecCCCCceEEEEEEEEEe
Q 004056 380 HDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 380 ~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
.+.|++|.+...|+|+++++|.|
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 68999999878999999999987
No 84
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=4.3e-15 Score=137.43 Aligned_cols=101 Identities=39% Similarity=0.625 Sum_probs=91.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
|+|+|++|++|+..+..|.+||||++++.+ ..++|+++.+++||.|||+|.|.+... ..+.|.|+|||++..+ +++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 579999999999999889999999999976 568999999999999999999998753 3578999999999886 9999
Q ss_pred eEEEEecCcccCCCccceeeecCC
Q 004056 365 GDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|++.+++.++..+...+.|++|.+
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcC
Confidence 999999999998888899999985
No 85
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.5e-15 Score=143.68 Aligned_cols=102 Identities=28% Similarity=0.438 Sum_probs=91.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC----CeEEEeeeecCCCCCcceeeEEEeeccCC--------------CCCE
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG----PYRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SPNV 348 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg----~~~~kTkvikkTlNP~WnEtF~f~V~~~e--------------~~~~ 348 (776)
|+|+|++|++|+.+ ..|.+||||+++++ .+.++|+++.++.||.|||+|.|.+.... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 67899999999999999999999987531 2458
Q ss_pred EEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 349 L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
|.|+|||++..+ +++||++.++|.++........|++|++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999985 99999999999999877788999999874
No 86
>PLN03008 Phospholipase D delta
Probab=99.60 E-value=5.1e-15 Score=174.03 Aligned_cols=119 Identities=24% Similarity=0.394 Sum_probs=104.7
Q ss_pred eeEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEeCCe-EEE
Q 004056 284 VAYARVEVVEASDMKPSDL------------------------------------------NGLADPYVKGQLGPY-RFR 320 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~------------------------------------------~G~sDPYVkv~Lg~~-~~k 320 (776)
.|.|.|+|.+|++|+.||+ .+++||||+|.++.+ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5899999999999986432 246799999999874 679
Q ss_pred eeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeecCCC------CceEE
Q 004056 321 TKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRL 394 (776)
Q Consensus 321 TkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI 394 (776)
|+++++++||+|||+|.|.+... ...|.|+|||+|.+++++||++.|||.++..+...+.|++|.+. ..|+|
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence 99999999999999999999863 35899999999999999999999999999999999999999652 36799
Q ss_pred EEEEEEEecC
Q 004056 395 HLAITVLEES 404 (776)
Q Consensus 395 ~LsL~~~~~~ 404 (776)
+|+|+|.+..
T Consensus 171 ~v~lqf~pv~ 180 (868)
T PLN03008 171 FIDMKFTPFD 180 (868)
T ss_pred EEEEEEEEcc
Confidence 9999999973
No 87
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.59 E-value=5.7e-15 Score=143.71 Aligned_cols=94 Identities=31% Similarity=0.579 Sum_probs=85.6
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
.|.|+|+|++|++|+..+. +.+||||+++++++.++|+++++++||.|||+|.|.+... ...|.|+|||++.++ |+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 3789999999999999987 8999999999999999999999999999999999999863 578999999999987 99
Q ss_pred ceeEEEEecCcccCCCcc
Q 004056 363 TLGDCTINISDLRDGQRH 380 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~ 380 (776)
+||++.++|.++......
T Consensus 78 ~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 78 SMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEEEEEHHHhhhhhhh
Confidence 999999999998765433
No 88
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.6e-14 Score=133.75 Aligned_cols=108 Identities=32% Similarity=0.450 Sum_probs=86.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCC-CCEEEEEEeecCCCC-CCc
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~-~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|+|++|++|+.. |.+||||+++++++ .++|+++++ +||.|||+|.|.+...+. ...|.|.+||.+... +.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999884 589999999 999999999999975332 246888888887654 555
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~ 400 (776)
+|.+ +|..+..+...+.|++|++. ..|+|+|++.|
T Consensus 78 ~g~v--~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKV--ALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 6655 55555557778999999863 37999999875
No 89
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=1e-14 Score=137.89 Aligned_cols=115 Identities=29% Similarity=0.379 Sum_probs=91.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~--~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
+|+|+|++|++|+++|..|.+||||+++++++. .+|+++++++||.|||+|.|.+... ..+.|.|+|||+|.++ |+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 489999999999999999999999999998854 5788899999999999999988643 3568999999999986 99
Q ss_pred ceeEEEEecCcccCCCccceeeecCC--CCceEEEEEEEEEe
Q 004056 363 TLGDCTINISDLRDGQRHDMWIPLQN--IKIGRLHLAITVLE 402 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~L~~--~~~GeI~LsL~~~~ 402 (776)
+||++.++|++... ..+..|.-+.. .+.|.++..-.+.+
T Consensus 80 ~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFF-SKHRATCGLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeeccccc-chHHHhccCCCcccccCceecCcccCc
Confidence 99999999998764 22333333332 24677766554443
No 90
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=2.5e-14 Score=137.93 Aligned_cols=109 Identities=27% Similarity=0.365 Sum_probs=91.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------eEEEeeeecCCCCCcc-eeeEEEeeccCCCCCEEEE
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVI 351 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------------~~~kTkvikkTlNP~W-nEtF~f~V~~~e~~~~L~V 351 (776)
+..|++++|+||+ ++..|++||||++++.+ ++++|+++++++||+| ||+|.|.+.. .+.|.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEE
Confidence 4678999999998 77889999999999954 3689999999999999 9999999863 368999
Q ss_pred EEeecCCCC----CCceeEEEEecCcccCCC---ccceeeecCCC-----CceEEEEEE
Q 004056 352 EVRDKDHFV----DDTLGDCTINISDLRDGQ---RHDMWIPLQNI-----KIGRLHLAI 398 (776)
Q Consensus 352 ~VyD~D~~~----Dd~LG~v~I~L~~L~~~~---~~~~W~~L~~~-----~~GeI~LsL 398 (776)
+|||++..+ +++||++.++|.++..+. ....|++|+.. -+|+|.+.+
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999986542 799999999999997553 36789999853 268887765
No 91
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.56 E-value=2.9e-14 Score=134.90 Aligned_cols=110 Identities=24% Similarity=0.437 Sum_probs=91.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
..|.|+|++|+ |...+..+.+||||+++++.+ .++|+++++++||.|||+|.|.+.. .+.|.|+|||++..+ |+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCc
Confidence 36899999998 555555789999999999886 8999999999999999999999863 468999999999986 99
Q ss_pred ceeEEEEecCcccCCCc-----cceeeecCCC------CceEEEEEE
Q 004056 363 TLGDCTINISDLRDGQR-----HDMWIPLQNI------KIGRLHLAI 398 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~-----~~~W~~L~~~------~~GeI~LsL 398 (776)
+||++.++|.++..... ...|++|... ..|+|++.+
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999875432 2358888532 368887765
No 92
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.56 E-value=9e-15 Score=166.33 Aligned_cols=162 Identities=27% Similarity=0.376 Sum_probs=138.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCc
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~ 363 (776)
..|.|.|.+|+||++.+..|.+||||.|.+.. ..+||.++.+++.|.|.|+|+|.++. .-+.|.|-|||.|...|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccccccccc
Confidence 45899999999999999999999999999987 68999999999999999999999985 3578999999999334999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEEEecC-C-----------------CccCCCccccccccc
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEES-A-----------------KGVDSPCDGGTLNKE 420 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~~~~-~-----------------k~~~dP~vkv~L~~e 420 (776)
||.+.|.=.+|......+.|+.|... -+|+|||++.+.+.. . +..+|||+.+.+
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~--- 159 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL--- 159 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee---
Confidence 99999998888877788999999863 289999999998761 1 123799999877
Q ss_pred CCCCcccccccceeecCCCceEEEecccccCC
Q 004056 421 GMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 421 ~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
.++-+.+.++|.+++++.||.|++.+-+.+-
T Consensus 160 -~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~ 190 (800)
T KOG2059|consen 160 -CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVT 190 (800)
T ss_pred -cccchhhccccceeeeccCcchhhheeeeec
Confidence 3445556689999999999999987766653
No 93
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=2.3e-14 Score=134.14 Aligned_cols=97 Identities=20% Similarity=0.337 Sum_probs=85.0
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC----C
Q 004056 291 VVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH----F 359 (776)
Q Consensus 291 VieA~~L~~~D~~G~sDPYVkv~Lg~~-------~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~----~ 359 (776)
.++|++|++++..|.+||||++++.+. .++|+++++++||+|||+|.|.+.. +..+.|.|+|||+|. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~-~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF-EEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe-EeeeEEEEEEEEecCCcCCC
Confidence 479999999999999999999999764 4899999999999999999998653 234689999999997 5
Q ss_pred C-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
+ +++||++.+++.++..+.....|+.|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 4 9999999999999998877888999853
No 94
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.55 E-value=8.6e-14 Score=135.49 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=96.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE-EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC-C--
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH-F-- 359 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~-~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~-~-- 359 (776)
...|.|.|++|++|++++ +|||.+.|+... .||+++.++.||.|+|.|.|.... ....|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~--~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLP--PVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCC--cccEEEEEEEEccCcccc
Confidence 367999999999999865 899999999965 699999999999999999997654 23679999986543 2
Q ss_pred --CCCceeEEEEecCcccCCCccceeeecCCC-------------CceEEEEEEEEEec
Q 004056 360 --VDDTLGDCTINISDLRDGQRHDMWIPLQNI-------------KIGRLHLAITVLEE 403 (776)
Q Consensus 360 --~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-------------~~GeI~LsL~~~~~ 403 (776)
++++||.+.||+.++..+...+.||+|.+. ..+.|++++.|.+.
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 479999999999999998889999999752 13689999999875
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=3.3e-14 Score=180.34 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=106.5
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVD 361 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~D 361 (776)
-.|.|+|+|++|+||. +..|.+||||++.++++ +.||++++++.||+|||+|+|.+..++..+.|+|+|||+|.+++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3699999999999998 44689999999999975 88999999999999999999888866555789999999999998
Q ss_pred CceeEEEEecCcccCCCccceeeecCC--CCceE---EEEEEEEEe
Q 004056 362 DTLGDCTINISDLRDGQRHDMWIPLQN--IKIGR---LHLAITVLE 402 (776)
Q Consensus 362 d~LG~v~I~L~~L~~~~~~~~W~~L~~--~~~Ge---I~LsL~~~~ 402 (776)
+.||++.|+|.++..++....||+|.+ .+.|+ |++.+.|.+
T Consensus 2056 d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2056 SSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 899999999999999999999999986 57898 999998864
No 96
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=3.7e-13 Score=126.42 Aligned_cols=111 Identities=23% Similarity=0.486 Sum_probs=92.4
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEeC------CeEEEeeeecCCC-CCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 286 YARVEVVEASDMKPSD--LNGLADPYVKGQLG------PYRFRTKTQRKTL-SPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 286 vL~V~VieA~~L~~~D--~~G~sDPYVkv~Lg------~~~~kTkvikkTl-NP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
.|+|+|++|++|+.++ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+...+ ...|.|+|||.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeC
Confidence 6899999999999988 57889999999993 4678999988775 9999999999988533 35799999999
Q ss_pred CCCCCCceeEEEEecCcccCCCccceeeecCC-----CCceEEEEEEEE
Q 004056 357 DHFVDDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITV 400 (776)
Q Consensus 357 D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~~ 400 (776)
+..++++||++.++|.++..+. .|++|.+ ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence 9888999999999999996543 5778864 236788887764
No 97
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.49 E-value=2.4e-13 Score=127.44 Aligned_cols=93 Identities=26% Similarity=0.381 Sum_probs=74.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeec-----
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK----- 356 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~----- 356 (776)
|.|+|++|+||+ +.+||||++++.+ .+++|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccc
Confidence 689999999996 5689999999964 46899999999999999999999873 57999999998
Q ss_pred --CCCC-CCceeEEEEecCc--ccCCCccceeeecC
Q 004056 357 --DHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 387 (776)
Q Consensus 357 --D~~~-Dd~LG~v~I~L~~--L~~~~~~~~W~~L~ 387 (776)
|..+ |++||.+.+.|+. +.....+...+.|.
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred cccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 3445 9999888887753 44444444445554
No 98
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.46 E-value=3.8e-14 Score=136.84 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=90.2
Q ss_pred ceEEEEEEEEEecCCC-------------------ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC
Q 004056 391 IGRLHLAITVLEESAK-------------------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 451 (776)
Q Consensus 391 ~GeI~LsL~~~~~~~k-------------------~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L 451 (776)
.|+|+|+|+|.+...+ ..+|||+|+++ +.++++.+|+||.+++++.||+||+.+.|++
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l---~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v 77 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTL---KHQNAKLKKKQTKRAKHKINPVWNEMIMFEL 77 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEE---EcCCcccceeccceeeCCCCCccccEEEEEC
Confidence 3888888888765211 22699999999 5667888999999999999999999999999
Q ss_pred CCCCCCCCCCceEEEEecCeeee---eE-EEe-cCCcccccccccccCCCCCccceEeec
Q 004056 452 SSEKSPKVADNFEPINIEGQQET---GI-WVH-QPGSEVAQTWEPRKGKNRRLDTLVRRV 506 (776)
Q Consensus 452 p~~~~~~~~d~~~vi~~~G~~~~---gv-~~~-~pg~~~~~~W~~~~~~~r~~~~q~~~~ 506 (776)
|.+++...+..++++++++.... |- .++ ...+...+||.+|+.+||+|++|||..
T Consensus 78 ~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L 137 (138)
T cd08407 78 PSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQL 137 (138)
T ss_pred CHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEEC
Confidence 99889999999999999854333 33 232 223344699999999999999999963
No 99
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=4.7e-13 Score=123.10 Aligned_cols=89 Identities=25% Similarity=0.444 Sum_probs=75.6
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccC---CCCCEEEEEEeecCCC
Q 004056 289 VEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTW---DSPNVLVIEVRDKDHF 359 (776)
Q Consensus 289 V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~---e~~~~L~V~VyD~D~~ 359 (776)
+-.++|++|+.+|..|.+||||++++.+ ..++|+++++++||+|| +|.|.+... +..+.|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3456999999999999999999999854 35899999999999999 788876432 2256899999999998
Q ss_pred C-CCceeEEEEecCcccCCC
Q 004056 360 V-DDTLGDCTINISDLRDGQ 378 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~ 378 (776)
+ |++||++.++|+++...+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCC
Confidence 6 999999999999998543
No 100
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9.3e-13 Score=147.66 Aligned_cols=188 Identities=24% Similarity=0.358 Sum_probs=137.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC-----
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----- 359 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~----- 359 (776)
..++++|+.|+||.++|..|++||||...++..+.||+++...+||+|||.|+|.+++ ....+.+.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCceeEEEEecCcccHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999997 457899999999862
Q ss_pred -------CCCceeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEEEecCCCccCCCcccccc-cccCCCCcc
Q 004056 360 -------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKGVDSPCDGGTL-NKEGMGNKE 426 (776)
Q Consensus 360 -------~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~~~~~k~~~dP~vkv~L-~~e~~~gkr 426 (776)
+|||+|+..|.+..+. +..+.||.|+.. -+|.|+|.|.+.-.. .....||-..+- +.|
T Consensus 373 rqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisveikg-eekvapyhvqytclhe------ 443 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVEIKG-EEKVAPYHVQYTCLHE------ 443 (1283)
T ss_pred HHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEEEcC-ccccccceeeehhHhh------
Confidence 3999999999988765 568899999863 379888888776542 223345544332 000
Q ss_pred cccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeeeeEEEecCCcccccccccccCC---------CC
Q 004056 427 DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGK---------NR 497 (776)
Q Consensus 427 lkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~gv~~~~pg~~~~~~W~~~~~~---------~r 497 (776)
| .|... .+. ..+..-+..|....++|..+.|.+....+..|+|. --
T Consensus 444 -------------n------lfh~~--~~~----~~vkip~argddawkv~fdetaqeivdefamrygiesiyqamthfa 498 (1283)
T KOG1011|consen 444 -------------N------LFHAH--TDD----GEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFA 498 (1283)
T ss_pred -------------h------hHHhh--hcc----cceeCCccCCCccceehhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0 00000 000 01111123455555777777777777777777773 35
Q ss_pred CccceEeecCC
Q 004056 498 RLDTLVRRVPN 508 (776)
Q Consensus 498 ~~~~q~~~~~~ 508 (776)
|+-+.+.|.|-
T Consensus 499 cl~skymcpgv 509 (1283)
T KOG1011|consen 499 CLSSKYMCPGV 509 (1283)
T ss_pred HHhhcccCCCc
Confidence 77788888773
No 101
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.32 E-value=3.8e-12 Score=109.52 Aligned_cols=81 Identities=35% Similarity=0.644 Sum_probs=73.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|+|+|++|+||+..+..+..||||++++.. ..++|+++.++.+|.|||+|.|.+...+ .+.|.|+|||++..+ |+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence 789999999999988888999999999977 6799999999999999999999977543 345999999999998 99
Q ss_pred ceeEEE
Q 004056 363 TLGDCT 368 (776)
Q Consensus 363 ~LG~v~ 368 (776)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 102
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.6e-12 Score=140.86 Aligned_cols=113 Identities=27% Similarity=0.428 Sum_probs=95.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~ 346 (776)
+...|+|.|.+..|.|+|.|++|++|+.++.++.+||||++++.. .+.+|.+.++++||+|||+|.|.|+.....
T Consensus 285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 357899999999999999999999999999999999999999854 578999999999999999999998853332
Q ss_pred -CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeec
Q 004056 347 -NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 347 -~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
-.|.|+|||+|.++ +++||.|.+.... .+.....|..+
T Consensus 365 ~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m 404 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEM 404 (421)
T ss_pred eeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHH
Confidence 37999999999998 8899999988775 33334455544
No 103
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.27 E-value=2.3e-12 Score=124.11 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=87.0
Q ss_pred eEEEEEEEEEecC-----------------CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC
Q 004056 392 GRLHLAITVLEES-----------------AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 454 (776)
Q Consensus 392 GeI~LsL~~~~~~-----------------~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~ 454 (776)
|+|+++|+|.+.. ....+|||+++++ ...+++..|+||.+++++.||+||+.+.|+++..
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l---~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYL---LQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEE---EeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 7777777776542 1235799999999 4567777889999999999999999999999988
Q ss_pred CCCCCCCceEEEEecCe--eee-eEE-Ee--cCCcccccccccccCCCCCccceEee
Q 004056 455 KSPKVADNFEPINIEGQ--QET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 455 ~~~~~~d~~~vi~~~G~--~~~-gv~-~~--~pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
+.......+.+++.+.. .+. |-. ++ ..| ...+||.+|+.+||+++++||.
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g-~~~~hW~~ml~~~~~~v~~WH~ 134 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASG-MGLSHWNQMLASLRKPVAMWHP 134 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCC-hhHHHHHHHHHCCCCeeeEeee
Confidence 88899999999999843 222 433 33 233 4469999999999999999995
No 104
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.23 E-value=6.5e-11 Score=102.79 Aligned_cols=99 Identities=44% Similarity=0.831 Sum_probs=87.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
|.|+|++|++|......+..+|||.+.+.. ..++|.++.++.||.|||.|.|.+... ....|.|+||+.+... +.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 578999999998877778899999999988 899999999999999999999999852 3468999999999887 9999
Q ss_pred eEEEEecCccc-CCCccceeeec
Q 004056 365 GDCTINISDLR-DGQRHDMWIPL 386 (776)
Q Consensus 365 G~v~I~L~~L~-~~~~~~~W~~L 386 (776)
|.+.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 66677888865
No 105
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.22 E-value=8.5e-11 Score=102.98 Aligned_cols=94 Identities=39% Similarity=0.614 Sum_probs=82.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~---~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|++|++|......+..+|||++++.+. .++|+++.++.||.|||+|.|.+.... .+.|.|+|||.+..+ +.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence 7899999999998876678899999999874 899999999999999999999998642 678999999999876 99
Q ss_pred ceeEEEEecCcccCCCccc
Q 004056 363 TLGDCTINISDLRDGQRHD 381 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~ 381 (776)
++|.+.++|.++..+..+.
T Consensus 81 ~~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred eeEEEEEEHHHcccCcccc
Confidence 9999999999988765443
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.19 E-value=9.2e-11 Score=112.57 Aligned_cols=94 Identities=30% Similarity=0.465 Sum_probs=79.1
Q ss_pred EEEEEEEecCCCCCC--CCC--CCCcEEEEEeCC---eEEEeeeecCCCC--CcceeeEEEeeccCC-------------
Q 004056 287 ARVEVVEASDMKPSD--LNG--LADPYVKGQLGP---YRFRTKTQRKTLS--PKWHEEFNIPISTWD------------- 344 (776)
Q Consensus 287 L~V~VieA~~L~~~D--~~G--~sDPYVkv~Lg~---~~~kTkvikkTlN--P~WnEtF~f~V~~~e------------- 344 (776)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.|+.+++| |.||+.|.|++....
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966544 366 499999999975 6799999999999 999999999876411
Q ss_pred ---------CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc
Q 004056 345 ---------SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 380 (776)
Q Consensus 345 ---------~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~ 380 (776)
....|.++|||+|.++ |++||++.++|..+..+...
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~ 127 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKT 127 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccc
Confidence 2357999999999997 99999999999998876543
No 107
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.11 E-value=2e-10 Score=137.76 Aligned_cols=109 Identities=35% Similarity=0.537 Sum_probs=97.5
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~ 359 (776)
-.+.|.|.|.+..|.||+..|.+|.+||||++.+.. ..|+|+++++|+||+|||.|.++|.+. ....|.+.|+|+|..
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG 1114 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC
Confidence 346899999999999999999999999999999987 489999999999999999999999863 456899999999998
Q ss_pred C-CCceeEEEEecCcccCCCccceeeecCCCC
Q 004056 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (776)
. ++.||.+.++|..+..+.....-++|.+..
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred CCccccccccccHhhcCcCCccceeeeccCcc
Confidence 6 999999999999999888777777777643
No 108
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.10 E-value=4.4e-11 Score=115.16 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=76.9
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---eEE-Eec---
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---GIW-VHQ--- 480 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---gv~-~~~--- 480 (776)
..|||+++++. ..+++.+++||.+++++.||+||+.+.++++.++.......+.+++.++.... |-. ++.
T Consensus 34 ~~d~yVkv~l~---~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 34 HTSVYVKVSLM---IHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCeEEEEEEE---ECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCccc
Confidence 47999999983 34566678899999999999999999999988888888889999998843332 333 331
Q ss_pred CCcccccccccccCCCCCccceEeecC
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
..+....||.+|+.+||.++++||..|
T Consensus 111 ~~~~~~~hW~~~~~~p~~~i~~WH~l~ 137 (137)
T cd08409 111 ARGKELEHWNDMLSKPKELIKRWHALG 137 (137)
T ss_pred CCChHHHHHHHHHhCCCCceeEEEeCC
Confidence 223445999999999999999999754
No 109
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.07 E-value=7e-11 Score=114.07 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=77.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---e-EEEe--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---G-IWVH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---g-v~~~--~ 480 (776)
...||||++++.. ..++++.++||.+++++.||+||+.+.+.++..+....+..+.++++++.... | +.++ .
T Consensus 34 ~~~dpyVkv~llp--~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 34 KAPDTYVKLTLLN--SDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCCeeEEEEEEe--CCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 3579999999842 24556678999999999999999999999998888888999999999842222 3 3333 3
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.|.+...||..|+.+||+|+++||.
T Consensus 112 ~~~~~~~hW~~~l~~~~~~v~~WH~ 136 (138)
T cd08408 112 SGEEEEEHWNEMKESKGQQVCRWHT 136 (138)
T ss_pred CCchHHHHHHHHHhCCCCEEeEeee
Confidence 4545569999999999999999995
No 110
>PLN02270 phospholipase D alpha
Probab=99.05 E-value=1.3e-09 Score=129.06 Aligned_cols=118 Identities=18% Similarity=0.354 Sum_probs=102.3
Q ss_pred eeEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEeCC-eEEEeeeecCC-CCCcceeeEEEeeccC
Q 004056 284 VAYARVEVVEASDMKPSD------------------LNGLADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTW 343 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D------------------~~G~sDPYVkv~Lg~-~~~kTkvikkT-lNP~WnEtF~f~V~~~ 343 (776)
.|.|.|+|.+|++|+.++ ..+++||||.+.++. ...||+++.+. .||.|||+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 589999999999998642 135789999999987 67899999884 6999999999999863
Q ss_pred CCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeecCCCC------ceEEEEEEEEEec
Q 004056 344 DSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK------IGRLHLAITVLEE 403 (776)
Q Consensus 344 e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~------~GeI~LsL~~~~~ 403 (776)
...+.|.|.|.|.++..+||.+.+|+.++..+...+.|+++.+.. .-+||++++|.+.
T Consensus 87 --~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 467999999999999999999999999999999999999996522 2389999999986
No 111
>PLN02223 phosphoinositide phospholipase C
Probab=99.03 E-value=1.9e-09 Score=123.25 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=87.4
Q ss_pred eEEEEEEEEecCCCC-----CCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEe
Q 004056 285 AYARVEVVEASDMKP-----SDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (776)
Q Consensus 285 GvL~V~VieA~~L~~-----~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~Vy 354 (776)
..|.|+|+.|++++. .+.....||||+|.+.+ ..++|++..++.||+|||+|.|.+..++ -..|+|+||
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~V~ 487 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFEVY 487 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEEEE
Confidence 579999999999751 12235689999999954 4678888888999999999999998654 347999999
Q ss_pred ecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEE
Q 004056 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV 400 (776)
Q Consensus 355 D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~ 400 (776)
|+|... ++|+|++.+|+..|..|. ++++|.+.. .-.|.+++.|
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999876 999999999999999887 345665432 2345555544
No 112
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.94 E-value=5e-10 Score=127.86 Aligned_cols=101 Identities=29% Similarity=0.415 Sum_probs=90.3
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcceeeEEEeeccCC---C
Q 004056 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD---S 345 (776)
Q Consensus 276 fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------~~~kTkvikkTlNP~WnEtF~f~V~~~e---~ 345 (776)
....|......|.|.|+.|+++.+.|.+|.+||||+|.++| ..++|+|+.+|+||+|+|+|+|.|+... .
T Consensus 938 vr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te 1017 (1103)
T KOG1328|consen 938 VRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTE 1017 (1103)
T ss_pred EEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccc
Confidence 44678888999999999999999999999999999999998 3579999999999999999999998532 1
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~ 376 (776)
...|.|+|+|+|..+ +||-|++.+.|+++..
T Consensus 1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 347999999999997 9999999999998864
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=8.3e-09 Score=120.12 Aligned_cols=101 Identities=29% Similarity=0.392 Sum_probs=83.7
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~------D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
...|.|+|+.|++++.. +.....||||+|.+.+ .+.+|+++.++.||+|||+|.|.+..++. ..|+|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEE
Confidence 46899999999987531 1123459999999853 57799999999999999999999886543 479999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|||+|..+ ++++|++.+||..|..|. +|++|.+
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99999886 999999999999999887 4888875
No 114
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.91 E-value=5.9e-10 Score=106.93 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=74.2
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---e-EEEe--cC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---G-IWVH--QP 481 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---g-v~~~--~p 481 (776)
..|||+++++ ..+++..+++||.+++++.||+||+.+.+.++.++.......+.+.+.+..... | +.++ ..
T Consensus 34 ~~DPyV~v~l---~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 34 GSDPFVKIQL---VHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCeEEEEEE---EcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 5799999987 234556677999999999999999999999887777666778889988743322 3 3333 24
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
|.....||..|+.++++|+++||.
T Consensus 111 ~~~~~~~W~~l~~~~~~~~~~wh~ 134 (135)
T cd08410 111 GPSETNHWRRMLNSQRTAVEQWHS 134 (135)
T ss_pred CchHHHHHHHHHhCCCCEeeEeec
Confidence 444569999999999999999995
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.82 E-value=1.1e-09 Score=125.04 Aligned_cols=120 Identities=27% Similarity=0.501 Sum_probs=98.4
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------e------------------EEEeeeecCCCCC
Q 004056 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------Y------------------RFRTKTQRKTLSP 330 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------------~------------------~~kTkvikkTlNP 330 (776)
.|.-.|.|.+.+|+||.++|.+|.+|||+.+.+.+ + .+-|.++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 35556788899999999999999999999987643 0 1247788999999
Q ss_pred cceeeEEEeeccCCCCCEEEEEEeecCC---------------------------------C----CCCceeEEEEecCc
Q 004056 331 KWHEEFNIPISTWDSPNVLVIEVRDKDH---------------------------------F----VDDTLGDCTINISD 373 (776)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~VyD~D~---------------------------------~----~Dd~LG~v~I~L~~ 373 (776)
+|+|.|.|.|.+. ....+++.+||+|. . .|||+|.+.|||.+
T Consensus 191 kW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred chhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999875 35689999999982 0 17999999999999
Q ss_pred ccCCCccceeeecCCC-----CceEEEEEEEEEec
Q 004056 374 LRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE 403 (776)
Q Consensus 374 L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~~~ 403 (776)
+...+ .+.||.|++. -+|.++|.+-+...
T Consensus 270 iP~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 270 IPPDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred CCcch-HHHHhccCcccccccccceEEEEEEEeee
Confidence 98754 8899999873 38999999966554
No 116
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.79 E-value=3.7e-09 Score=101.17 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=72.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCee--ee-eEE-E--ec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ--ET-GIW-V--HQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~--~~-gv~-~--~~ 480 (776)
..+|||+++++. .++++..++||.+.+++.||+||+.+.+.++..+.......+.+++.+... +- |-. + ..
T Consensus 34 g~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 34 GLSDPYVKIHLM---QNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred CCCCCeEEEEEE---ECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence 357999999883 345566778999999999999999998888766666666778888887432 22 332 2 23
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.| ....||.+|+..|+.|++|||.
T Consensus 111 ~~-~~~~~W~~~~~~~~~~~~~wh~ 134 (136)
T cd08402 111 TG-AELRHWSDMLASPRRPIAQWHT 134 (136)
T ss_pred CC-hHHHHHHHHHhCCCCeeeEEEE
Confidence 43 3459999999999999999995
No 117
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.79 E-value=2.9e-08 Score=115.47 Aligned_cols=101 Identities=26% Similarity=0.379 Sum_probs=82.1
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~------D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
..+|.|+|+.+++++.. +.....||||+|.+-+ .+.+|++..++.||.|||+|.|.+.-++ -..|+|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEEE
Confidence 46899999999987521 2234579999999843 4578999999999999999999988654 3579999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|+|+|... |+|+|++.+|+..|..|.++ ++|.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~---V~L~~ 580 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIHA---VPLFN 580 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccce---EeccC
Confidence 99999865 99999999999999988753 56654
No 118
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.76 E-value=6.7e-08 Score=112.34 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.6
Q ss_pred eeEEEEEEEEecCCC----CC--CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMK----PS--DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~----~~--D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
...|.|+|+.|++++ .. +.....||||+|.+.+ .+.+|+++.++.||.|||+|.|.+..++ -..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence 357999999998853 11 1234579999999953 5779999999999999999999987644 3579999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|||+|... ++++|++.+|+..|..|.+ .++|.+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 99999876 9999999999999998875 356654
No 119
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=3.3e-08 Score=115.31 Aligned_cols=112 Identities=27% Similarity=0.495 Sum_probs=88.4
Q ss_pred EEEEEEEEecCCCCCC----CCCCCCcEEEEEeCC-----eEEEee-eecCCCCCcceeeEEEeeccCCCCCEEEEEEee
Q 004056 286 YARVEVVEASDMKPSD----LNGLADPYVKGQLGP-----YRFRTK-TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (776)
Q Consensus 286 vL~V~VieA~~L~~~D----~~G~sDPYVkv~Lg~-----~~~kTk-vikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD 355 (776)
+|.|.|+.++++++.- .+..+||||.|.+.+ ...+|+ +..++-||.|+|+|+|.+..++. ..|+|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 6999999999766542 235689999999854 467999 56679999999999999987654 579999999
Q ss_pred cCCCC-CCceeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEEE
Q 004056 356 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (776)
Q Consensus 356 ~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~ 401 (776)
+|..+ |||+|+..+|+..|..|.++ ++|.+. ..-.|.+++.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 99998 99999999999999988765 455543 133455555554
No 120
>PLN02228 Phosphoinositide phospholipase C
Probab=98.73 E-value=6.1e-08 Score=112.36 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=89.3
Q ss_pred eEEEEEEEEecCCCC---CC---CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcc-eeeEEEeeccCCCCCEEEEE
Q 004056 285 AYARVEVVEASDMKP---SD---LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 285 GvL~V~VieA~~L~~---~D---~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~W-nEtF~f~V~~~e~~~~L~V~ 352 (776)
..|.|+|+.|++|+. .+ .....||||+|.+.+ .+++|+++.++.||.| ||+|.|.+..++. ..|+|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEEE
Confidence 479999999998731 11 233479999999843 5689999999999999 9999999886543 479999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEEEe
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLE 402 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~~~ 402 (776)
|+|+|..+ ++++|++.+|+..|..|.++ ++|.+.. ...|.+++.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCCCCCCCCCeEEEEEEEEcC
Confidence 99999775 99999999999999987753 5665422 456777777655
No 121
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.72 E-value=8.1e-09 Score=98.58 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=72.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~--~ 480 (776)
...|||+++++. ..+++.+++||.+.+++.||+||+.+.+.++..........+.+++++. ..+- |-. +. .
T Consensus 33 g~~dpyvkv~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 33 GFSDPYVKVSLM---CEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCceEEEEEE---eCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 357999999983 3566667889999999999999999888887666655667788999873 2232 443 22 3
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
+|. ...||.+++.++++|++|||-
T Consensus 110 ~~~-~~~~w~~~~~~~~~~~~~wh~ 133 (134)
T cd08403 110 DGQ-GREHWNEMLANPRKPIAQWHQ 133 (134)
T ss_pred CCc-hHHHHHHHHHCCCCeeeEeec
Confidence 332 358999999999999999994
No 122
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.69 E-value=1.6e-08 Score=95.28 Aligned_cols=81 Identities=9% Similarity=0.015 Sum_probs=61.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee--e-eEE-EecC-
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE--T-GIW-VHQP- 481 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~--~-gv~-~~~p- 481 (776)
..+|||+|++| +...+ .+|+||.++++++||+||+.+.|++|.+++......+.++++|.-.. . |-. +.-.
T Consensus 30 g~sDPYVKv~L---~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~ 105 (118)
T cd08677 30 AGCECYISGCV---SVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLAD 105 (118)
T ss_pred CCCCeEEEEEE---cCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEcccc
Confidence 34799999999 33344 45779999999999999999999999999999999999999994333 2 433 2211
Q ss_pred --Cccccccccc
Q 004056 482 --GSEVAQTWEP 491 (776)
Q Consensus 482 --g~~~~~~W~~ 491 (776)
-+...+||.+
T Consensus 106 ~~~~~~~~~W~~ 117 (118)
T cd08677 106 VSMMLGAAQWVD 117 (118)
T ss_pred ccCCccccchhc
Confidence 1233578976
No 123
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.68 E-value=1.1e-08 Score=98.08 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=73.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---eE-EE--ec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---GI-WV--HQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---gv-~~--~~ 480 (776)
..+|||+++++. .++++..++||.+++++.||+||+.+.+.++..........+.+++.+..... |- .+ ..
T Consensus 34 g~~Dpyv~v~l~---~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 34 GLADPYVKVNLY---YGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCeEEEEEEE---cCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 357999999883 34556678899999999999999999888887777666777888988743222 33 22 23
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.+ ....||.++...+++|+++||-
T Consensus 111 ~~-~~~~~w~~l~~~~~~~i~~Wh~ 134 (136)
T cd08404 111 SG-SGGHHWKEVCNPPRRQIAEWHM 134 (136)
T ss_pred CC-chHHHHHHHHhCCCCeeeEEEe
Confidence 33 4469999999999999999995
No 124
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.66 E-value=7.1e-08 Score=88.57 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=72.0
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCC
Q 004056 287 ARVEVVEASDMKPSD---LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D---~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd 362 (776)
|.|+|..|+++.-.+ ..+.+||||.++++. ++.||++ +.||.|||+|.|.+. ....+.+.|||+.....-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence 678999999998877 578899999999988 5888887 589999999999995 357899999999766677
Q ss_pred ceeEEEEecCcccC
Q 004056 363 TLGDCTINISDLRD 376 (776)
Q Consensus 363 ~LG~v~I~L~~L~~ 376 (776)
.||-.-+.|+++..
T Consensus 75 Pi~llW~~~sdi~E 88 (109)
T cd08689 75 PVGLLWLRLSDIAE 88 (109)
T ss_pred ceeeehhhHHHHHH
Confidence 88988888888764
No 125
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.65 E-value=1.6e-08 Score=96.75 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=71.7
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCee--ee-eEE-E--ecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ--ET-GIW-V--HQP 481 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~--~~-gv~-~--~~p 481 (776)
..|||+++++. ..+++..++||.+.+++.||+||+.+.+.++.++.......+.+++.+... +- |-. + ...
T Consensus 35 ~~dpyV~v~l~---~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 35 TSDPYVKVWLM---YKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCceEEEEEE---eCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 57999999883 344555678999999999999999998888766655566788888887432 22 333 2 234
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
| ...+||.+|+..|..|+++||.
T Consensus 112 ~-~~~~~w~~~~~~~~~~~~~wh~ 134 (136)
T cd08405 112 G-LELKHWKDMLSKPRQPVAQWHR 134 (136)
T ss_pred C-chHHHHHHHHhCCCCchhEEEe
Confidence 3 4469999999999999999995
No 126
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.63 E-value=6.9e-08 Score=108.27 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=96.9
Q ss_pred eEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcce-eeEEEeeccCC-CCCEEEEEEeecCCCC-
Q 004056 285 AYARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKWH-EEFNIPISTWD-SPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~~~~kTkvikkTlNP~Wn-EtF~f~V~~~e-~~~~L~V~VyD~D~~~- 360 (776)
|.|.|.|..|++||.||. ....|.||.++++...++|.+..+++||.|| +.|.|++.+.+ ....|.|++.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678999999999999995 4567999999999999999999999999999 57899998654 3457999999999998
Q ss_pred CCceeEEEEecCcccCC----------CccceeeecCCC---CceEEEEEEE
Q 004056 361 DDTLGDCTINISDLRDG----------QRHDMWIPLQNI---KIGRLHLAIT 399 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~----------~~~~~W~~L~~~---~~GeI~LsL~ 399 (776)
+|-||.+.|+++.|... .....|+++-+. -+|+|.+-+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 99999999999987542 234679998763 4788876554
No 127
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.53 E-value=2.2e-07 Score=107.79 Aligned_cols=114 Identities=22% Similarity=0.276 Sum_probs=89.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcce-eeEEEeeccCCCCCEEEEEEeecC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWH-EEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~Wn-EtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
-.|.|.|+.|+.|+... .|-..|||.|.+.+ ..++|.|+.|++||+|| |+|+|.|.+++ -..|+|.|||.|
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe-~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE-FAFLRFVVYEED 1142 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc-eEEEEEEEeccc
Confidence 46889999999999544 35567999999854 34456668889999999 99999999764 357999999999
Q ss_pred CCC-CCceeEEEEecCcccCCCccceeeecCCCCc-----eEEEEEEEEEec
Q 004056 358 HFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKI-----GRLHLAITVLEE 403 (776)
Q Consensus 358 ~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~-----GeI~LsL~~~~~ 403 (776)
.++ ..|||++.+|+..+..|- +.++|++.-+ ..|++.+...+.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred ccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccc
Confidence 998 679999999999998765 3467877543 445555555544
No 128
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.52 E-value=6.2e-08 Score=92.18 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=72.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eee-eEE-Eec-C
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW-VHQ-P 481 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~-~~~-p 481 (776)
...|||+++++. ..+.+..++||.+++++.||+||+.+.+.++..+.......+.+++.+.. .+- |-. +.- .
T Consensus 32 ~~~DpyV~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 32 GYSDPFVKLYLK---PDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCcEEEEEEE---cCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 457999999983 33444567899999999999999999998877666666778888888732 222 333 332 2
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.++...||.+|+.+|+.|+++||-
T Consensus 109 ~~~~~~~W~~~l~~~~~~~~~wh~ 132 (133)
T cd08384 109 KGERLRHWLDCLKNPDKKIEAWHT 132 (133)
T ss_pred CCchHHHHHHHHhCCCCChheeec
Confidence 224458999999999999999994
No 129
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.52 E-value=9.8e-08 Score=114.19 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=96.0
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC--C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e--~ 345 (776)
+...++.|. .|+|.|.|..|++|+-..-+..+||||+.++.| .+.||+++++|.||.|||.........+ .
T Consensus 1514 qV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~ 1591 (1639)
T KOG0905|consen 1514 QVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQ 1591 (1639)
T ss_pred eEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhh
Confidence 445677776 899999999999996655567799999999987 4789999999999999999887633222 3
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.+.|.+.||..+... +.++|.+.++|.++...+....||.|..
T Consensus 1592 qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1592 QRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 467999999999887 9999999999999998888889999975
No 130
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.36 E-value=2.8e-07 Score=87.21 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=71.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee--e-eEE---Eec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE--T-GIW---VHQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~--~-gv~---~~~ 480 (776)
...|||+++++. ..+.+..++||.+.+++.||.||+.+.+.++..+.......+.+++.+.... - |-. +..
T Consensus 33 ~~~dpyv~v~l~---~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 33 GLSDPYVKVSLL---QGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCcEEEEEEE---cCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 357999999883 3445556789999999999999999888887666555667788888764222 1 433 233
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.+....||.+++..++.++++||+
T Consensus 110 -~~~~~~~W~~l~~~~~~~~~~wh~ 133 (134)
T cd00276 110 -GGEELEHWNEMLASPRKPIARWHK 133 (134)
T ss_pred -CCcHHHHHHHHHhCCCCceEEeee
Confidence 333459999999999999999997
No 131
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.36 E-value=5.3e-07 Score=104.02 Aligned_cols=118 Identities=23% Similarity=0.364 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcceeeEEEeeccCC--------------CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SP 346 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~----~~~kTkvikkTlNP~WnEtF~f~V~~~e--------------~~ 346 (776)
.-+++++++++++-+.+ ++.+|||+.+...+ +..+|+++++|.+|.|||.|+|.+...+ ..
T Consensus 131 ~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~ 209 (800)
T KOG2059|consen 131 SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDM 209 (800)
T ss_pred CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCce
Confidence 34566677777777765 56699999999865 3469999999999999999999987531 12
Q ss_pred CEEEEEEee-cCCCC-CCceeEEEEecCcccCCCccceeeecCCC----------CceEEEEEEEEEec
Q 004056 347 NVLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI----------KIGRLHLAITVLEE 403 (776)
Q Consensus 347 ~~L~V~VyD-~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~----------~~GeI~LsL~~~~~ 403 (776)
-.|++++|+ .+... ++|+|++.+++..+........||.|++. ..|.+++.++|...
T Consensus 210 l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 210 LEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred eeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 368899998 44444 99999999999998877778899999752 25788999988764
No 132
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=98.33 E-value=7.3e-07 Score=80.26 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=59.5
Q ss_pred HHHHHHhCc-ccchHHHHHHhhccchHHHHhh-cCCcccceeeeeeeecCCCCCEEeeEEEEecCCCCCeEEEEEEEEEe
Q 004056 79 NHAIEKMWP-ICMEQIASQKLLLPIIPWFLEK-YKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFL 156 (776)
Q Consensus 79 N~iL~~~Wp-~~~e~~~s~~I~~~~l~~~l~~-~kP~~i~~l~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vilDldis~~ 156 (776)
|.+++|++- ++..+.+.+.+. ..+...|++ .+|++++.+.+++++||+.||.|+++++.. ...++++.+|+++.|.
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~-~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~-~~~~g~~~~~~dv~Y~ 78 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIK-EKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPD-LDPDGELWIEFDVSYS 78 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHH-HHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccc-cCCCCCEEEEEEEEEc
Confidence 677777555 333334444443 344445555 469999999999999999999999999953 3456679999999997
Q ss_pred eCCCcchhe
Q 004056 157 TADDMSAIL 165 (776)
Q Consensus 157 ~~~D~si~l 165 (776)
| ++.+.+
T Consensus 79 G--~~~l~l 85 (91)
T PF10296_consen 79 G--GFSLTL 85 (91)
T ss_pred C--CeEEEE
Confidence 5 444443
No 133
>PLN02352 phospholipase D epsilon
Probab=98.32 E-value=2.9e-06 Score=100.85 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=87.9
Q ss_pred eeEEEEEEEEecCCCCC----CC-CCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecC
Q 004056 284 VAYARVEVVEASDMKPS----DL-NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~----D~-~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
.|.|.++|.+|+-+... +. +...||||.+.++. ...|| .+.-||.|||+|.+++... ....+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~-- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT-- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec--
Confidence 58999999999833221 11 11239999999987 56788 5666999999999999863 22469999988
Q ss_pred CCCCCceeEEEEecCcccCCCc-cceeeecCCCC----ce-EEEEEEEEEec
Q 004056 358 HFVDDTLGDCTINISDLRDGQR-HDMWIPLQNIK----IG-RLHLAITVLEE 403 (776)
Q Consensus 358 ~~~Dd~LG~v~I~L~~L~~~~~-~~~W~~L~~~~----~G-eI~LsL~~~~~ 403 (776)
+..+||.+.+|+.++..+.. .+.|+++.+.. .| +|+++++|.+.
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 57899999999999998866 89999996522 34 89999999987
No 134
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.29 E-value=7.6e-07 Score=85.86 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.4
Q ss_pred CCCcccccccccCCCCcccccccceeecCCC-ceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Eec--C
Q 004056 409 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFA-NETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VHQ--P 481 (776)
Q Consensus 409 ~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~-nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~~--p 481 (776)
.|||||++| +..+++++||||.++++++ ||+|||.+.|++|..+ ..+...+.+.+.+. .++- |-+ ++. .
T Consensus 35 ~dpYVKV~L---~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 35 LSFFVKVGM---FSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCcEEEEEE---EECCCcceeecCccEECCCCCceecceEEEeCCchh-heeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 478999999 5678999999999999995 6999999999998764 45777777888864 3333 544 443 2
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
+++...||.+|+.+||+|++|||.
T Consensus 111 ~~~~~~hW~~m~~~pr~~ia~WH~ 134 (135)
T cd08692 111 SSEAVEQWKDTIANPEKVVTKWHS 134 (135)
T ss_pred CchhhhhHHHHHhCCCCeeeEeec
Confidence 445579999999999999999995
No 135
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=9.2e-07 Score=94.80 Aligned_cols=109 Identities=29% Similarity=0.483 Sum_probs=89.8
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
...++.|.....-|.|++++|..|..+|.+|.+||||..++.+ .+.+|++.++|+||.||+.|.|.+...+ ...
T Consensus 222 i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~ 301 (362)
T KOG1013|consen 222 ILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYK 301 (362)
T ss_pred eeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcc
Confidence 4567888888999999999999999999999999999999976 4678999999999999999999988644 345
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceee
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWI 384 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~ 384 (776)
.+.|.|||++..+ .+++|-+...+- ..+..+..|+
T Consensus 302 kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 302 KVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred eEEEeecccCCCcCccCCCccccccc--ccchhhcCcc
Confidence 7999999999985 899987765433 3334444454
No 136
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.14 E-value=1.1e-06 Score=104.49 Aligned_cols=88 Identities=39% Similarity=0.522 Sum_probs=78.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~--~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
..++|.|++|.+|.+.|.+|.+|||+++.+|.+. -++..+.+|+||+|++.|++...- ...+.|.+.|||+|..+ |
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l-p~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL-PFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc-chhhcceeEEEEeeccccc
Confidence 4567999999999999999999999999999855 577889999999999999988764 24578999999999998 9
Q ss_pred CceeEEEEecCc
Q 004056 362 DTLGDCTINISD 373 (776)
Q Consensus 362 d~LG~v~I~L~~ 373 (776)
+.||+..++|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999874
No 137
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=97.88 E-value=1.4e-05 Score=75.87 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=50.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..+.+..++||.+++++.||+||+.+.+.++..+.......+.+++++.
T Consensus 35 ~~~DpyVkv~l~---p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 35 KRSNPYVKTYLL---PDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred CCCCcEEEEEEE---cCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 357999999983 3455566789999999999999999988888777777778899999874
No 138
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=97.86 E-value=1.5e-05 Score=75.54 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=50.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ....+..++||.+++++.||+||+.+.+.++..+.......+.+++++.
T Consensus 35 g~~dpyVkv~l~---p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 35 QRSDPYVKTYLL---PDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred CCCCcEEEEEEE---cCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 467999999993 3344456789999999999999999999888777777778899999873
No 139
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=97.84 E-value=2e-05 Score=74.93 Aligned_cols=62 Identities=8% Similarity=-0.120 Sum_probs=52.9
Q ss_pred ccCCCcccccccccCCCCcc-cccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKE-DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkr-lkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
..+|||+|++|+ ...++ ..++||.+++++.||+||+.+.++++.+++......+.+++++..
T Consensus 33 ~~~dpyVKv~Ll---p~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~ 95 (124)
T cd08680 33 ENSKVYVRVALL---PCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPD 95 (124)
T ss_pred CCCCeEEEEEEc---cCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCC
Confidence 457999999994 44444 357899999999999999999999999999999999999999843
No 140
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=97.84 E-value=9.4e-06 Score=80.63 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=63.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecCee--ee-eEE-EecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQ--ET-GIW-VHQP 481 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G~~--~~-gv~-~~~p 481 (776)
...|||+++++. ..+.+..++||.+.+++.||+||+.+.+.. +..+.......+.+++.+... +- |-. +.-.
T Consensus 46 g~~DPYVkv~l~---~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~ 122 (162)
T cd04020 46 GTSDSFVKCYLL---PDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLG 122 (162)
T ss_pred CCCCCEEEEEEE---cCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCC
Confidence 457999999883 344455678999999999999999887763 344455556678888876322 21 332 2211
Q ss_pred --------------CcccccccccccCCCCCccc
Q 004056 482 --------------GSEVAQTWEPRKGKNRRLDT 501 (776)
Q Consensus 482 --------------g~~~~~~W~~~~~~~r~~~~ 501 (776)
.++...||..|+.+|++++.
T Consensus 123 ~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~ 156 (162)
T cd04020 123 TGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVE 156 (162)
T ss_pred ccccCCCccccccCChHHHHHHHHHHhCCCCeEE
Confidence 23446899999999987764
No 141
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=97.83 E-value=2e-05 Score=75.32 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=50.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...||||++++. ...++..++||.+++++.||+||+.+.+.++..++......+.+++.+.
T Consensus 35 g~~dpYVkv~ll---p~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 35 KKCHPYVKVCLL---PDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred CCCCeEEEEEEE---eCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 457999999984 3344455789999999999999999999998877777888999999874
No 142
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=97.75 E-value=3.4e-05 Score=72.85 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=50.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G~ 471 (776)
..+|||+++++. ...++..++||.+.+++.||+||+.+.+.+ |..+.......+.+++.+..
T Consensus 31 ~~~DpyVkv~l~---~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 31 SDPDPYVKTYLL---PDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred CCCCCEEEEEEe---eCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 467999999983 334455688999999999999999999887 76677777888999998743
No 143
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00012 Score=83.86 Aligned_cols=104 Identities=28% Similarity=0.486 Sum_probs=87.3
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-CC------eEEEeeeecCCCCCcceeeEEEeeccCCCCC--EEEEEEe
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQL-GP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPN--VLVIEVR 354 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~L-g~------~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~--~L~V~Vy 354 (776)
...++|.|+.|.+|+-. ..|.--|||.+.+ || +++.|++..++-.|.|||+|.|.+.+...+. .|.|+|-
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 35678889999999754 3577789999997 44 5788999999999999999999987643333 6999999
Q ss_pred ecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 355 D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|+...+ |..+|-+.++|.++...+....|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 998877 8999999999999998888999999974
No 144
>PLN02964 phosphatidylserine decarboxylase
Probab=97.62 E-value=5.4e-05 Score=89.54 Aligned_cols=92 Identities=21% Similarity=0.380 Sum_probs=76.8
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEE-EEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYV-KGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYV-kv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~ 359 (776)
+.-.|.+.+++++|+ |+ ..|||. .+++|.+.|||.+.++|+||+||+...|.+... .....+|.|||.+++
T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNRL 121 (644)
T ss_pred ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCCC
Confidence 345689999999998 43 258875 577888999999999999999999999999864 345679999999999
Q ss_pred C-CCceeEEEEecCcccCCCcc
Q 004056 360 V-DDTLGDCTINISDLRDGQRH 380 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~~~ 380 (776)
+ ++++|.|.++|.++...+..
T Consensus 122 s~n~lv~~~e~~~t~f~~kqi~ 143 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQEPE 143 (644)
T ss_pred CHHHhhhheeecHhhccHHHHH
Confidence 8 99999999999888765543
No 145
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=97.58 E-value=9.1e-05 Score=72.55 Aligned_cols=56 Identities=14% Similarity=-0.015 Sum_probs=45.7
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEE-Eec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi-~~~ 469 (776)
.+|||+|++| +..+++..|+||.++++++||+||+.+.+.++ .......++++ +.+
T Consensus 50 ~sDPYVKv~L---lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~ 106 (146)
T cd04028 50 LPAPYVKVYL---LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYG 106 (146)
T ss_pred CcCCeEEEEE---ECCCccccceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCC
Confidence 4799999999 34566677899999999999999999999886 45556778888 454
No 146
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00013 Score=79.94 Aligned_cols=104 Identities=24% Similarity=0.277 Sum_probs=86.1
Q ss_pred ceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEe-e
Q 004056 283 PVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR-D 355 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~Vy-D 355 (776)
..|.|.|.|++|++|..+.. ...++|||+|++.+ .+.+|+...+|++|.|.....|.-.. ....|.+.|| |
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEecc
Confidence 57899999999999998753 33789999999965 36789999999999998877776543 4578999999 5
Q ss_pred cCCCC-CCceeEEEEecCcccCCC-ccceeeecCC
Q 004056 356 KDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPLQN 388 (776)
Q Consensus 356 ~D~~~-Dd~LG~v~I~L~~L~~~~-~~~~W~~L~~ 388 (776)
+.++- +.|+|.+.+-|.+|.... ....||+|.+
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 66665 889999999999998876 6788999975
No 147
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.36 E-value=0.00089 Score=77.00 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=101.4
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC----C-CCceeEEEEecCcccCCCccceeeecCC---
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----V-DDTLGDCTINISDLRDGQRHDMWIPLQN--- 388 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~----~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~--- 388 (776)
...+|.++++.+||.|-+.|.+... ++..|.|++.+||.+.. . ++|+|++.+.+.++........-+.|++
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~-fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~ 119 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYR-FEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN 119 (529)
T ss_pred cccceeeeeccCCccceeeechhhe-eeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc
Confidence 3458999999999999999988877 45678999999998875 2 8999999999999886554433334443
Q ss_pred CCceEEEEEEEEEecC-----------------CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC
Q 004056 389 IKIGRLHLAITVLEES-----------------AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 451 (776)
Q Consensus 389 ~~~GeI~LsL~~~~~~-----------------~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L 451 (776)
...|.|.+...-.... .-..+|||-..+...+ .+....-++|++.+.++||.|..-.....
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~--d~s~~~~~~tEv~~n~l~p~w~~~~i~~~ 197 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVD--DGSTQMLYRTEVVKNTLNPQWAPFSISLQ 197 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecC--CCceeeccccceeccCCCCcccccccchh
Confidence 3467776665432211 0124678877666322 56666778999999999999975333221
Q ss_pred CCCC-CCCCCCceEEEEecCe
Q 004056 452 SSEK-SPKVADNFEPINIEGQ 471 (776)
Q Consensus 452 p~~~-~~~~~d~~~vi~~~G~ 471 (776)
.... ....+..+.+.+++..
T Consensus 198 ~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 198 SLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred hhcccCCCCceEEEEeccCCC
Confidence 1121 1133445566666543
No 148
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.35 E-value=0.00021 Score=63.71 Aligned_cols=96 Identities=22% Similarity=0.436 Sum_probs=69.7
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEEe--C-CeEEEeeeecCCCCCcceeeEEEeeccCCCC-CEEEEEEeecCCCCCC
Q 004056 288 RVEVVEASDMKPSDLNG-LADPYVKGQL--G-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSP-NVLVIEVRDKDHFVDD 362 (776)
Q Consensus 288 ~V~VieA~~L~~~D~~G-~sDPYVkv~L--g-~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~-~~L~V~VyD~D~~~Dd 362 (776)
-++++.+++|.-....| .+--|++--+ . +..+||.+.+...||.|+|+|.|.+.-+... -+|.|.||. ..-+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 37889999987543322 3344766333 2 3678999999999999999999998854433 379999998 333488
Q ss_pred ceeEEEEecCcccCCCccceeee
Q 004056 363 TLGDCTINISDLRDGQRHDMWIP 385 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~ 385 (776)
.||.|.+.|+++-. +..+.|.+
T Consensus 81 ~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCH-HHhhhhhc
Confidence 99999999998764 33566764
No 149
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=97.34 E-value=0.00022 Score=66.87 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=45.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++.. .. .+++||.+.+++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 35 ~~~dpyv~v~l~~---~~--~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 35 GTSDPYVKVYLLP---DK--KKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCCCEEEEEEEc---CC--CCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 3579999998832 12 24678999999999999999888887655555667888888874
No 150
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=97.26 E-value=0.00036 Score=66.47 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=44.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccc-cCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFS-SVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~-~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+.. . +.+++||.+.+++.||+||+.+.+ .++..+.......+.+++.+.
T Consensus 36 ~~~DpyV~v~l~~---~--~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 36 GTSDPYVKLQLLP---E--KEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred CCcCCEEEEEEeC---C--cCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 4579999998832 1 124578999999999999998887 566666555667788888763
No 151
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.14 E-value=0.0001 Score=88.33 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=91.0
Q ss_pred eeeeeecC-ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEe---eccC-----CC
Q 004056 275 WFSVDVKE-PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP---ISTW-----DS 345 (776)
Q Consensus 275 ~fsL~y~~-~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~---V~~~-----e~ 345 (776)
.|+..+.. ....+++.|.+|+.|.+.|..+.+|||+.+....+...|.++.+|+||.||.+..|. +... ..
T Consensus 195 ~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ 274 (1105)
T KOG1326|consen 195 EFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKN 274 (1105)
T ss_pred ceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcC
Confidence 34444432 345689999999999999999999999999999999999999999999999998774 2211 12
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC--ceEEEEE
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK--IGRLHLA 397 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~--~GeI~Ls 397 (776)
...+.|+|||.++.+ ++++|.+.....-... .....|+++.... .|++.++
T Consensus 275 ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~l~a 328 (1105)
T KOG1326|consen 275 PPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDVLIA 328 (1105)
T ss_pred CCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccchhHH
Confidence 347899999999987 9999998765433222 4556788875422 4554433
No 152
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=97.12 E-value=0.00069 Score=63.38 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=44.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..+....++||.+.+++.||+||+.+.+.+ +..+.......+.+++.+.
T Consensus 35 ~~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~ 96 (125)
T cd04031 35 SLRNPYVKVYLL---PDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR 96 (125)
T ss_pred CCCCCEEEEEEc---cCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 357999999983 233344578999999999999999887774 3344445567788888774
No 153
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=97.11 E-value=0.00024 Score=66.98 Aligned_cols=60 Identities=13% Similarity=-0.080 Sum_probs=45.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ...++..++||.+.+++.||+||+.+.++++..+... ...+.+++.++
T Consensus 30 g~~dpYVkv~l~---p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~-~l~v~V~~~~~ 89 (119)
T cd08685 30 GTCNSYVKISLS---PDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQK-RLLVTVWNKLS 89 (119)
T ss_pred CCCCeeEEEEEE---eCCCCcceEeCccccCCCCCccccEEEEEcChHHhCC-EEEEEEECCCC
Confidence 457999999994 3444556789999999999999999999887655433 34577777654
No 154
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=97.10 E-value=0.00051 Score=64.51 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=46.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. ..++...++||.+.+++.||+||+.+.+.++..+.......+.+.+.+.
T Consensus 35 ~~~dpyv~v~l~---~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 35 DIPDPYVRLYLL---PDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CCCCceEEEEEE---cCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 457999999983 3444567789999999999999999888887666655566667776653
No 155
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=97.06 E-value=0.00057 Score=64.20 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=46.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..++ +++||.+.+++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 35 g~~dpyv~v~l~---~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 35 GTADPYCKVRLL---PDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCCCeEEEEEe---cCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 357999999883 2222 3578999999999999999998887766666677888888864
No 156
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.05 E-value=0.0007 Score=64.59 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=74.4
Q ss_pred EEEEEEEecCCCCCCC-------------CCCCCcEEEEEeC--C--eEEEeeeecCCCCCcceeeEEEeecc------C
Q 004056 287 ARVEVVEASDMKPSDL-------------NGLADPYVKGQLG--P--YRFRTKTQRKTLSPKWHEEFNIPIST------W 343 (776)
Q Consensus 287 L~V~VieA~~L~~~D~-------------~G~sDPYVkv~Lg--~--~~~kTkvikkTlNP~WnEtF~f~V~~------~ 343 (776)
|.|.|++|.||+.... .-.-++||++.+. + ...+|+++.++..|.|+.+++|.++- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889998875421 1124799999863 3 67899999999999999999998761 0
Q ss_pred C--------CCCEEEEEEeecCCC-----------CCCceeEEEEecCcccCC-Cccceeeec
Q 004056 344 D--------SPNVLVIEVRDKDHF-----------VDDTLGDCTINISDLRDG-QRHDMWIPL 386 (776)
Q Consensus 344 e--------~~~~L~V~VyD~D~~-----------~Dd~LG~v~I~L~~L~~~-~~~~~W~~L 386 (776)
+ ....+.|+||+.... +|-.||.+.||+.+|... .....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 123689999987643 255899999999998754 356789875
No 157
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.02 E-value=0.00081 Score=63.73 Aligned_cols=62 Identities=6% Similarity=-0.093 Sum_probs=47.6
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC-CCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-KSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~-~~~~~~d~~~vi~~~ 469 (776)
+.+|||+++++... ..+.+.+++||.++++++||+||+.+.|+++.+ ........+++.+++
T Consensus 18 g~~DPYVkV~l~g~-~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 18 GMFRPFVEVNLIGP-HLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CCCCCEEEEEEecC-CCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 46799999998421 123444567899999999999999999999865 455566788999886
No 158
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=97.00 E-value=0.00052 Score=64.97 Aligned_cols=74 Identities=22% Similarity=0.151 Sum_probs=54.4
Q ss_pred ceEEEEEEEEEecC------------C-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CC
Q 004056 391 IGRLHLAITVLEES------------A-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VS 452 (776)
Q Consensus 391 ~GeI~LsL~~~~~~------------~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp 452 (776)
.|+|++++.|.+.. . ....|||+++.+.. . + ..++||.++++ .||+||+.+.+. ++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp---~-~-~~~~kTkv~~~-~nP~fnE~F~f~~i~ 75 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLP---S-K-KQRAKTKVQRG-PNPVFNETFTFSRVE 75 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEcc---C-C-cceeecccccC-CCCcccCEEEECCCC
Confidence 47777777666532 1 13468999987732 2 2 25678989888 999999999998 77
Q ss_pred CCCCCCCCCceEEEEecC
Q 004056 453 SEKSPKVADNFEPINIEG 470 (776)
Q Consensus 453 ~~~~~~~~d~~~vi~~~G 470 (776)
.++.......+.+++++.
T Consensus 76 ~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 76 PEELNNMALRFRLYGVER 93 (124)
T ss_pred HHHhccCEEEEEEEECCC
Confidence 777777888899999874
No 159
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=96.88 E-value=0.00086 Score=62.53 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=46.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..+....++||.+++++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 34 ~~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 34 KRSNPYVKVYLL---PDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred CCCCcEEEEEEe---cCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 357999999883 2333445789999999999999999888887666555566777777763
No 160
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=96.79 E-value=0.0016 Score=64.53 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=57.2
Q ss_pred ceEEEEEEEEE---ec-CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC------CCCCCC
Q 004056 391 IGRLHLAITVL---EE-SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE------KSPKVA 460 (776)
Q Consensus 391 ~GeI~LsL~~~---~~-~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~------~~~~~~ 460 (776)
.|+|.+..+-- +. ......|||+++++ .+.+.+..+.||.+++++.||+||+.+.+.++.. .....+
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l---~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEF---PYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEE---ecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 46666555432 12 22346899999988 4556667889999999999999999998888655 245677
Q ss_pred CceEEEEecC
Q 004056 461 DNFEPINIEG 470 (776)
Q Consensus 461 d~~~vi~~~G 470 (776)
..+++++.++
T Consensus 80 L~~~V~d~~~ 89 (155)
T cd08690 80 LKFEVYHKGG 89 (155)
T ss_pred EEEEEEeCCC
Confidence 8899999976
No 161
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.58 E-value=0.0023 Score=70.98 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=93.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcceeeEEEeeccCC----------CCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD----------SPN 347 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg-----~~~~kTkvikkTlNP~WnEtF~f~V~~~e----------~~~ 347 (776)
....|.+.|+++.+++.....--.|-|+++.+- .++.+|.++++|.+|.|+|.|.+.+.... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 456788888898888764322234678887752 26789999999999999999999887522 123
Q ss_pred EEEEEEeecCCCC--CCceeEEEEecCcccCCCccceeeecCCCC---ceEEEEEEEEEec
Q 004056 348 VLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPLQNIK---IGRLHLAITVLEE 403 (776)
Q Consensus 348 ~L~V~VyD~D~~~--Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~---~GeI~LsL~~~~~ 403 (776)
.+.|++|.+..+- |.++|.+.+.|.-|...-.....++|.+.. .|.|.+.+.+...
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence 6999999998873 999999999999888776677788887642 7889888877643
No 162
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.55 E-value=0.002 Score=60.16 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=45.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
...|||+++++. ..++ +++||.+++++.||+||+.+.+.++..+.......+.+++.++.
T Consensus 34 ~~~dpyV~v~l~---~~~~--~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~ 93 (123)
T cd08390 34 AHCDPFVKVCLL---PDER--RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF 93 (123)
T ss_pred CCCCcEEEEEEe---eCCC--CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence 356999999883 2222 35789999999999999999888877666666678888888753
No 163
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.38 E-value=0.0079 Score=59.07 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
..+|||+++++. ...++..++||.+.+++.||+||+.+.|+++
T Consensus 17 g~sDPYV~V~l~---~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~ 59 (148)
T cd04010 17 GTCDPYASVTLI---YSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59 (148)
T ss_pred CCCCceEEEEEe---CCcccCcccCCccEeCCCCCccceEEEEEEe
Confidence 468999999983 3344456789999999999999999988874
No 164
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.35 E-value=0.0047 Score=57.87 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=41.7
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++.. .+. .+.||.+.+++.||+||+.+.+. .+..........+.+.+.+.
T Consensus 35 ~~~dpyv~v~~~~---~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 35 GTSDPFVKIYLLP---DKK--HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCCCceEEEEECC---CCC--cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 3579999998731 122 35799999999999999988775 34434444556777888763
No 165
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.23 E-value=0.0091 Score=68.95 Aligned_cols=87 Identities=26% Similarity=0.462 Sum_probs=69.5
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEeC--C----eEEEeeeecCCCCCcceeeEEEeecc---CCCCCEEEEEEeecCCC
Q 004056 289 VEVVEASDMKPSDLNGLADPYVKGQLG--P----YRFRTKTQRKTLSPKWHEEFNIPIST---WDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 289 V~VieA~~L~~~D~~G~sDPYVkv~Lg--~----~~~kTkvikkTlNP~WnEtF~f~V~~---~e~~~~L~V~VyD~D~~ 359 (776)
.-..+|++|.++|..+++|||..++-- . ..++|.++++++||.|-+ |.+.... .+....+.+.+||++..
T Consensus 140 ~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 140 QFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred eeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC
Confidence 334568999999999999999987742 2 478999999999999965 4444332 22346799999999998
Q ss_pred C-CCceeEEEEecCcccC
Q 004056 360 V-DDTLGDCTINISDLRD 376 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~ 376 (776)
+ +++||++..++.++..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 7 7999999999998864
No 166
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=95.95 E-value=0.0093 Score=56.96 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=42.7
Q ss_pred ccCCCcccccccccCCCCc--ccccccceeecCCCceEEEecccccCCCCC--CCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNK--EDQSNKEDIRESFANETTDKGSFSSVSSEK--SPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gk--rlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~--~~~~~d~~~vi~~~ 469 (776)
...|||+++++..+ .+ ...++||.+.+++.||+||+.+.+.++... .......+.+++.+
T Consensus 35 g~~dPyv~v~l~~~---~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d 98 (133)
T cd04009 35 GSSDPFVKVELLPR---HLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYD 98 (133)
T ss_pred CCCCCEEEEEEECC---CcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecC
Confidence 35799999988422 21 245789999999999999998888775432 23445566777765
No 167
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=95.68 E-value=0.02 Score=53.97 Aligned_cols=55 Identities=5% Similarity=0.040 Sum_probs=40.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC---CCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE---KSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~---~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+. + .++||.+.+++.||+||+.+.+.++.. +.......+.+++.+
T Consensus 18 g~~dpYv~v~l~-----~---~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 18 GTNDAYVIIQLG-----K---EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred cCCCceEEEEEC-----C---eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 467999999872 1 357899999999999999888877652 234445567777776
No 168
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=95.54 E-value=0.013 Score=54.89 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. .......++||.+.+++.||+||+.+.+. ++..+.......+.+++.+.
T Consensus 34 ~~~dpyv~v~~~---~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 34 GLSDPYVKLNLL---PGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred CCCCceEEEEEe---cCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 357999999883 33344567899999999999999887664 44334444455666676653
No 169
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=95.48 E-value=0.016 Score=54.89 Aligned_cols=65 Identities=5% Similarity=-0.160 Sum_probs=46.8
Q ss_pred EEEEEec-CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEe
Q 004056 397 AITVLEE-SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI 468 (776)
Q Consensus 397 sL~~~~~-~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~ 468 (776)
.+++..+ +++..+|||+++.+. ..++...+.||.+.++++||+||+.+.+.++. .....+.+++.
T Consensus 2 ~V~V~~A~~L~~~sDPYV~l~v~---~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~ 67 (118)
T cd08686 2 NVIVHSAQGFKQSANLYCTLEVD---SFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEK 67 (118)
T ss_pred EEEEEeCCCCCCCCCCEEEEEEc---CccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEc
Confidence 3445555 566779999999773 22333457899999999999999998887752 33566777776
No 170
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.46 E-value=0.012 Score=65.86 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=59.7
Q ss_pred CceEEEEEEEEEec---------------CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC
Q 004056 390 KIGRLHLAITVLEE---------------SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 454 (776)
Q Consensus 390 ~~GeI~LsL~~~~~---------------~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~ 454 (776)
.+|+|.|.+..... ..++.+|||+++.| ....+...|+||...+.++||+||+.+.+.|.+.
T Consensus 167 ~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kl---iPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~ 243 (683)
T KOG0696|consen 167 RRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKL---IPDPKNESKQKTKTIKATLNPVWNETFTFKLKPS 243 (683)
T ss_pred hcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEe---ccCCcchhhhhhhhhhhhcCccccceeEEecccc
Confidence 47877776654322 23456899999999 4566777889999999999999999999998654
Q ss_pred CCCCCCCceEEEEecCeeee
Q 004056 455 KSPKVADNFEPINIEGQQET 474 (776)
Q Consensus 455 ~~~~~~d~~~vi~~~G~~~~ 474 (776)
+.. -...++++|.+.+...
T Consensus 244 Dkd-rRlsiEvWDWDrTsRN 262 (683)
T KOG0696|consen 244 DKD-RRLSIEVWDWDRTSRN 262 (683)
T ss_pred ccc-ceeEEEEecccccccc
Confidence 432 2346788888866555
No 171
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.46 E-value=0.13 Score=50.96 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=85.6
Q ss_pred CceeEEEEEEEEecCCCCCCC--CCCCCcEEE--EEeCCeEEEeeeecCCCCCcceeeEEEeeccCC------------C
Q 004056 282 EPVAYARVEVVEASDMKPSDL--NGLADPYVK--GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------------S 345 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~--~G~sDPYVk--v~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e------------~ 345 (776)
+....|.++|..++-...--. .+..+.-.. +.+++|+|+|+.+..+.+|.|+|.|-|++.... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 345678999988874432111 134444444 445789999999999999999999999988532 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc--ceeeecCC------CCceEEEEEEEEEec
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN------IKIGRLHLAITVLEE 403 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~--~~W~~L~~------~~~GeI~LsL~~~~~ 403 (776)
.+.+++.|.--|..+ ..++|...++-..+...+.. ..-+.|.+ ...|-|.++++.+|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 346888888877775 68889998888877655443 33344433 147889999988875
No 172
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.32 E-value=0.14 Score=57.07 Aligned_cols=114 Identities=11% Similarity=0.211 Sum_probs=90.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCC------CCCEEEEEEeecCCC-
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------SPNVLVIEVRDKDHF- 359 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e------~~~~L~V~VyD~D~~- 359 (776)
+.|+|++|+|.+... .-.-.+..++.+....|..+..+-.|.||.....++.... ....|++++|-.|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998762 2345777889999999999999999999998888765321 345799999999833
Q ss_pred C-CCceeEEEEecCcc---cCC--CccceeeecCCC------CceEEEEEEEEEec
Q 004056 360 V-DDTLGDCTINISDL---RDG--QRHDMWIPLQNI------KIGRLHLAITVLEE 403 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L---~~~--~~~~~W~~L~~~------~~GeI~LsL~~~~~ 403 (776)
+ .+.||.+.++|... ..+ .....|++|-+. ..-+|.+.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 3 89999999999998 444 457899999764 25688888887765
No 173
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.97 E-value=0.038 Score=66.31 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=68.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeec-CCCCCcceee-EEEeeccCCCCCEEEEEEe
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQR-KTLSPKWHEE-FNIPISTWDSPNVLVIEVR 354 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------~~~kTkvik-kTlNP~WnEt-F~f~V~~~e~~~~L~V~Vy 354 (776)
.+.+.|+|++|+-|..++. ..||.|.+-+ ..+||+++. +++||+|+|. |.|.-.-.+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 3678999999999987663 4799998833 468898865 5899999974 7775221112347999999
Q ss_pred ecCCCCCCceeEEEEecCcccCCCcc
Q 004056 355 DKDHFVDDTLGDCTINISDLRDGQRH 380 (776)
Q Consensus 355 D~D~~~Dd~LG~v~I~L~~L~~~~~~ 380 (776)
+.. ..+||+-.+|+..|..|..+
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GYrh 800 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGYRH 800 (1189)
T ss_pred ccC---CceeeeeccchhcccCccee
Confidence 864 57999999999999987643
No 174
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.82 E-value=0.28 Score=48.93 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=68.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeec--cCCCCCEEEEEEeec
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~--~~e~~~~L~V~VyD~ 356 (776)
..++|+|+.+.++...+ .+|-||.+.+ +.+ ...|+.+.. .++.|||...|++. +......|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 35889999999987643 4688888865 442 224444433 67999999888765 333445799999997
Q ss_pred CCCC-----CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEE
Q 004056 357 DHFV-----DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (776)
Q Consensus 357 D~~~-----Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~ 400 (776)
...+ ...+|.+.++|-+... .| ++|...|.+-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~--------~L---r~G~~~L~lW~ 121 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTD--------TL---VSGKMALNLWP 121 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCC--------hh---hCCCEEEEEEc
Confidence 6421 2469999999887442 12 26777777654
No 175
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.12 E-value=0.26 Score=49.72 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=67.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeec--cCCCCCEEEEEEeec
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~--~~e~~~~L~V~VyD~ 356 (776)
..++|+|+.+.+|...+ ...+-||.+.| |.+ ...|+.+.-+..+.|||.+.|++. +.+....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 35899999999998622 34566777654 543 345655554567999999998765 333445799999997
Q ss_pred CCCC-----------------CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEE
Q 004056 357 DHFV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399 (776)
Q Consensus 357 D~~~-----------------Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (776)
.... +..||.+.++|-+... .| .+|...|.+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~L---r~G~~~L~lW 134 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QL---KTGDHTLYMW 134 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcccc--------hh---hcCCeEEEec
Confidence 5321 3578888888776432 12 2577666663
No 176
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=94.09 E-value=0.055 Score=49.81 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=48.9
Q ss_pred eEEEEEEEEEec-CC-CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC--CCCCCCCCCCceEEEE
Q 004056 392 GRLHLAITVLEE-SA-KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPIN 467 (776)
Q Consensus 392 GeI~LsL~~~~~-~~-k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L--p~~~~~~~~d~~~vi~ 467 (776)
|+..|++.+..+ ++ ....|||+++.+. + +++||.+++++.||+||+.+.+.+ +..+.......+.+++
T Consensus 2 ~~~~l~V~v~~a~~L~~~~~dpyv~v~~~-----~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 2 QDFQVRVRVIEARQLVGGNIDPVVKVEVG-----G---QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred CcEEEEEEEEEcccCCCCCCCCEEEEEEC-----C---EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 344566666665 22 3568999999883 2 257899999999999999887764 3333344566777888
Q ss_pred ecC
Q 004056 468 IEG 470 (776)
Q Consensus 468 ~~G 470 (776)
.+.
T Consensus 74 ~~~ 76 (111)
T cd04011 74 SRS 76 (111)
T ss_pred Ccc
Confidence 764
No 177
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=94.00 E-value=0.091 Score=48.49 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=42.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCC-CCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS-PKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~-~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ..++ .++||.+.+++.||+||+.+.+.+...+. ......+.+++.+.
T Consensus 21 ~~~Dpyv~v~~~---~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 21 GSSDPYVTASFA---KFGK--PLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CCCCccEEEEEc---cCCC--ccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 468999999883 2232 35789999999999999988776544432 23456777888763
No 178
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=93.52 E-value=0.19 Score=48.03 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=50.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CC-C---CC--CCCCCceEEEEecCeeee---eE
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS-E---KS--PKVADNFEPINIEGQQET---GI 476 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~-~---~~--~~~~d~~~vi~~~G~~~~---gv 476 (776)
...|||+++.+. + .++||.+.+++.||+||+.+.+.. .. . .. ......+.+++.+..... |-
T Consensus 20 g~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~ 91 (135)
T cd04017 20 GLSDPFARVSFL-----N---QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGR 91 (135)
T ss_pred CCCCCEEEEEEC-----C---eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceE
Confidence 468999999872 2 367899999999999999876652 11 1 11 112345777887743222 33
Q ss_pred EEecCCcccccccccccCCCCCccceEeec
Q 004056 477 WVHQPGSEVAQTWEPRKGKNRRLDTLVRRV 506 (776)
Q Consensus 477 ~~~~pg~~~~~~W~~~~~~~r~~~~q~~~~ 506 (776)
..-.|.......| ++.+.+||+..
T Consensus 92 ~~i~~~~~~~~~~------~~~~~~~W~~L 115 (135)
T cd04017 92 SVAKPLVKLDLEE------DFPPKLQWFPI 115 (135)
T ss_pred EEeeeeeecccCC------CCCCCceEEEe
Confidence 2112221111111 67788899865
No 179
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=93.28 E-value=0.12 Score=48.91 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=39.6
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..|||+++.+. ..+....++||.+.+++.||.||+.+.+.+...+ ......+.+++.+
T Consensus 33 ~~dpyv~v~~~---~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~~ 90 (131)
T cd04026 33 LSDPYVKLKLI---PDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDWD 90 (131)
T ss_pred CCCCcEEEEEE---cCCCCCceecceeecCCCCCCccceEEEeCCchh-cCCEEEEEEEECC
Confidence 57999998873 2222345689999999999999998887765332 1233455566665
No 180
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.26 E-value=0.079 Score=52.30 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=54.6
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eee-eEE------
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW------ 477 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~------ 477 (776)
..+|||+++.+ .++ +.||.+.+++.||+||+.+.+.+.... ......+++++.+.. .+- |-.
T Consensus 33 ~~~DPYV~V~~-----~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~-~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 33 ELVDPYVEVSF-----AGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPP-LCERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CCcCcEEEEEE-----CCE---eeecceEcCCCCCCcceEEEEEeeCCC-cCCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 35799999976 233 458999999999999999888653222 123456788887743 222 433
Q ss_pred EecCCcc-----cccccccccCCCCC
Q 004056 478 VHQPGSE-----VAQTWEPRKGKNRR 498 (776)
Q Consensus 478 ~~~pg~~-----~~~~W~~~~~~~r~ 498 (776)
+...+.+ ...+|-.+.+.||.
T Consensus 104 l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 104 ISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred hccCCccccCCccCceEEEeecCccc
Confidence 2233322 24799999999875
No 181
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=93.21 E-value=0.056 Score=66.66 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=65.8
Q ss_pred ceEEEEEEEEEecC-------C--------CccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCC
Q 004056 391 IGRLHLAITVLEES-------A--------KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSE 454 (776)
Q Consensus 391 ~GeI~LsL~~~~~~-------~--------k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~ 454 (776)
.|+|.|+|+|.... . ....|||||.+| ....++..|+||.+.++|.||+||+.-.++ .|.+
T Consensus 1512 ggqV~LsIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YL---lPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~ 1588 (1639)
T KOG0905|consen 1512 GGQVKLSISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYL---LPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKE 1588 (1639)
T ss_pred CceEEEEEEEcCceEEEEhhhhcccccccCCCCCCcceeEEe---cCCchHhhhhhhccccccCCCchhhheeecCCchh
Confidence 57999999997542 1 123689999999 577888899999999999999999988877 7777
Q ss_pred CCCCCCCceEEEEecCeeee
Q 004056 455 KSPKVADNFEPINIEGQQET 474 (776)
Q Consensus 455 ~~~~~~d~~~vi~~~G~~~~ 474 (776)
..+.-...+.|+..+|--++
T Consensus 1589 ~l~qReLQ~sVls~~~~~en 1608 (1639)
T KOG0905|consen 1589 ILQQRELQVSVLSNGGLLEN 1608 (1639)
T ss_pred hhhhheeeeeeecccceeee
Confidence 77777778888888776665
No 182
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=93.14 E-value=0.14 Score=47.16 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=49.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee-eeEE---Ee--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE-TGIW---VH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~-~gv~---~~--~ 480 (776)
..+|||+++.+. ++ ++.||.++++ .||.||+.+.+.++..+.......+.+++.++... .++. +. .
T Consensus 16 ~~~dpyv~v~~~-----~~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 16 GTRDPYCTVSLD-----QV--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCCceEEEEEC-----CE--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 468999999872 22 2467888888 99999999888876544333333344444432222 2222 22 2
Q ss_pred CCcccccccccccCCC
Q 004056 481 PGSEVAQTWEPRKGKN 496 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~ 496 (776)
. ++...+|-++.++.
T Consensus 88 ~-~~~~~~w~~L~~~~ 102 (117)
T cd08383 88 L-GQGKDEWFPLTPVD 102 (117)
T ss_pred C-CCcceeEEECccCC
Confidence 2 23458898887654
No 183
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.87 E-value=0.32 Score=45.94 Aligned_cols=85 Identities=8% Similarity=-0.050 Sum_probs=51.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCee--ee-eEE-EecCC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ--ET-GIW-VHQPG 482 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~--~~-gv~-~~~pg 482 (776)
..+|||+++.+. +++ .++||.+.+++.||+||+.+.+.+... ......+.+++.+... +- |-. +.-..
T Consensus 19 g~~DPYv~v~~~-----~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 90 (124)
T cd04037 19 GKSDPYLKIKLG-----KKK-INDRDNYIPNTLNPVFGKMFELEATLP--GNSILKISVMDYDLLGSDDLIGETVIDLED 90 (124)
T ss_pred CCCCcEEEEEEC-----Cee-ccceeeEEECCCCCccceEEEEEecCC--CCCEEEEEEEECCCCCCCceeEEEEEeecc
Confidence 468999999872 222 346777778899999998777654221 2334577788876332 22 433 22222
Q ss_pred cccccccccccCCCCCc
Q 004056 483 SEVAQTWEPRKGKNRRL 499 (776)
Q Consensus 483 ~~~~~~W~~~~~~~r~~ 499 (776)
-.-..||..+.-.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~ 107 (124)
T cd04037 91 RFFSKHRATCGLPPTYE 107 (124)
T ss_pred cccchHHHhccCCCccc
Confidence 12247787777766544
No 184
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=92.52 E-value=0.2 Score=48.00 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=39.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+.+.+ ++ ++.||.+.+++.||+||+.+.+.+.. ......+.+++.+.
T Consensus 22 g~sDPYv~i~~-----g~---~~~rTk~~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~d~ 74 (126)
T cd08379 22 GSTDAYCVAKY-----GP---KWVRTRTVEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDNSQ 74 (126)
T ss_pred CCCCeeEEEEE-----CC---EEeEcCcccCCCCCcceeEEEEEecC---CCCEEEEEEEECCC
Confidence 57899999976 22 24678888999999999998887642 12367788888764
No 185
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.42 E-value=0.64 Score=45.73 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeec--cCCCCCEEEEEEeecC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD 357 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~--~~e~~~~L~V~VyD~D 357 (776)
.++|++....++...+ ....+-||.+.+ +.+ ...|+......++.|||...|++. +......|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788887776521 234566777655 442 234444443468999999988865 3334457999999987
Q ss_pred CCC---CCceeEEEEecCccc
Q 004056 358 HFV---DDTLGDCTINISDLR 375 (776)
Q Consensus 358 ~~~---Dd~LG~v~I~L~~L~ 375 (776)
..+ +..||.+.++|-+..
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc
Confidence 653 589999999988754
No 186
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=92.25 E-value=0.14 Score=48.19 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=40.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC-CCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-KSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~-~~~~~~d~~~vi~~~G 470 (776)
..+|||+++.+. + .++||.+.+++.||+||+.+.+.++.. ........+.+++.+.
T Consensus 19 g~~dpyv~v~~~-----~---~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 19 GSSSAYVELDFD-----G---QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CCcCcEEEEEEC-----C---EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 467999999873 2 257899999999999999988877532 2333455677777653
No 187
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.99 E-value=2.3 Score=40.70 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=78.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeec-CCCCCcceeeEEEeeccC---C----CCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQR-KTLSPKWHEEFNIPISTW---D----SPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~---~~kTkvik-kTlNP~WnEtF~f~V~~~---e----~~~~L~V~ 352 (776)
.-.+.|+|.+..+++. ...--||+...+.. ..+|.... .+-.-.|||+|.+.+.-. . ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 4467889999998886 22345666666653 34554433 344579999998876521 1 23479999
Q ss_pred EeecCCCCC-CceeEEEEecCcccCC--CccceeeecCCC--CceEEEEEEEEEec
Q 004056 353 VRDKDHFVD-DTLGDCTINISDLRDG--QRHDMWIPLQNI--KIGRLHLAITVLEE 403 (776)
Q Consensus 353 VyD~D~~~D-d~LG~v~I~L~~L~~~--~~~~~W~~L~~~--~~GeI~LsL~~~~~ 403 (776)
|+.....+. ..+|.+.++|+++... .....-+.|... ....|+++|.+...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSEL 137 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEEC
Confidence 998864443 5999999999999874 345566777654 35678888887764
No 188
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=91.82 E-value=0.26 Score=47.87 Aligned_cols=56 Identities=13% Similarity=-0.051 Sum_probs=39.7
Q ss_pred ccCCCcccccccccCCCCcc--------cccccceeecCCCceEE-EecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKE--------DQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkr--------lkKKKT~vkk~t~nP~~-n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. ...+. .+++||.+.+++.||+| |+.+.+.++.. ....+++++.+
T Consensus 19 g~~DPyvki~~~---~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~v~V~D~~ 83 (137)
T cd08691 19 FNPDPYVKISIQ---PGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVLEIEVKDKF 83 (137)
T ss_pred CCCCceEEEEEE---CCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEEEEEEEecC
Confidence 357999999883 22222 24789999999999999 88888776432 24567777754
No 189
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=91.70 E-value=0.21 Score=46.24 Aligned_cols=54 Identities=9% Similarity=0.013 Sum_probs=39.5
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..|||+++.+. + ++.||.+.+++.||+||+.+.+.+.... ......+.+++.+.
T Consensus 25 ~~DPYv~v~~~-----~---~~~kT~v~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~ 78 (108)
T cd04039 25 DMDPFVIISFG-----R---RVFRTSWRRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDK 78 (108)
T ss_pred ccCceEEEEEC-----C---EeEeeeeecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCC
Confidence 37999998771 1 3568999999999999998877764333 23455678888873
No 190
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=91.69 E-value=0.28 Score=47.03 Aligned_cols=55 Identities=11% Similarity=-0.029 Sum_probs=39.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++ .++ ++||.+.+++.||+||+.+.+.+... .......+.+++.+.
T Consensus 46 g~~DPYVkV~~-----~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~ 100 (127)
T cd04032 46 TSTDGYVKVFF-----GGQ---EKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDN 100 (127)
T ss_pred CCCCeEEEEEE-----CCc---cccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCC
Confidence 35799999977 232 68999999999999998877653111 134456778888763
No 191
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=91.69 E-value=0.23 Score=46.84 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=50.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---eEE-Ee---
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---GIW-VH--- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---gv~-~~--- 479 (776)
..+|||+++.+. ++ +++||.+++++.||+||+.+.+.++... ....+.+++.+..... |.. +.
T Consensus 20 g~sDpYv~v~l~-----~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~~---~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 89 (121)
T cd08401 20 KMRDCYCTVNLD-----QE--EVFRTKTVEKSLCPFFGEDFYFEIPRTF---RHLSFYIYDRDVLRRDSVIGKVAIKKED 89 (121)
T ss_pred CCcCcEEEEEEC-----Cc--cEEEeeEEECCCCCccCCeEEEEcCCCC---CEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 357999999872 11 3478889999999999999988886431 3556667776643222 433 21
Q ss_pred cCCcccccccccccC
Q 004056 480 QPGSEVAQTWEPRKG 494 (776)
Q Consensus 480 ~pg~~~~~~W~~~~~ 494 (776)
....+....|.++..
T Consensus 90 l~~~~~~~~w~~L~~ 104 (121)
T cd08401 90 LHKYYGKDTWFPLQP 104 (121)
T ss_pred ccCCCCcEeeEEEEc
Confidence 122233477877754
No 192
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=91.48 E-value=0.25 Score=45.92 Aligned_cols=58 Identities=9% Similarity=-0.055 Sum_probs=40.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
...|||+++.+. ..+ ..++||.+.+++.||+||+.+.+.++... .....+.+++.+..
T Consensus 19 ~~~Dpyv~v~~~---~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~ 76 (119)
T cd04036 19 STPDCYVELWLP---TAS--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV 76 (119)
T ss_pred CCCCcEEEEEEc---CCC--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC
Confidence 457999998872 111 24678999999999999998887765432 22346777776643
No 193
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.41 E-value=0.37 Score=52.37 Aligned_cols=118 Identities=12% Similarity=0.016 Sum_probs=77.3
Q ss_pred ecCceeEEEEEEEEecCCCCCC--CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 280 VKEPVAYARVEVVEASDMKPSD--LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 280 y~~~~GvL~V~VieA~~L~~~D--~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
...-.|.|.+++.+++||.-.. .+-+-+-||.+.... .+.||.+.....-=.|.|+|...+.+ ...|.+-||.+
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~---~~vl~~lvySW 122 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN---IEVLHYLVYSW 122 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc---ceeeeEEEeec
Confidence 3456799999999999997543 245678899988765 45566666566666899999998875 35799999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEEE
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
+... +++.-.-.+.+..+.. +.-+.-+.|.-..+|++-+++.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred Cchhhccccccchhhhhhhhh-cCCcceeeeecccCCCCceecccC
Confidence 8865 6543222333333332 222323333333478777776543
No 194
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=91.16 E-value=0.18 Score=46.38 Aligned_cols=56 Identities=9% Similarity=0.001 Sum_probs=43.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEE-EecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~-n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. + .++||.+.+++.||+| |+.+.+.++..+.......+.+++.+.
T Consensus 19 ~~~Dpyv~v~~~-----~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 19 DLTDAFVEVKFG-----S---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CCCCceEEEEEC-----C---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 457999999872 2 4688999999999999 888878777665555566777887763
No 195
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=91.05 E-value=0.22 Score=46.47 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=40.9
Q ss_pred ccCCCcccccccccCCC-CcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMG-NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~-gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++++... . ++...++||.+.+++.||+||+.+.+.+..+.. ....+++++++
T Consensus 19 g~~DPyv~v~~~~~--~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d 78 (120)
T cd04048 19 SKSDPFVVVYVKTG--GSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVD 78 (120)
T ss_pred CCCCcEEEEEEEcC--CCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEec
Confidence 45799999988422 1 244567899999999999999877765433222 23456677765
No 196
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.71 E-value=0.43 Score=45.08 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=40.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+... ..++...++||.+.+++.||+||+.+.+.++... ....+.+++.+
T Consensus 19 ~~~Dpyv~v~~~~~-~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~l~~~v~d~~ 77 (133)
T cd04033 19 GASDPYVKISLYDP-DGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE---HRLLFEVFDEN 77 (133)
T ss_pred CCcCcEEEEEEECC-CCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC---CEEEEEEEECC
Confidence 45799999988421 1233455679999999999999998877765421 23456667665
No 197
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=90.52 E-value=0.32 Score=45.50 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=39.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++++. + .+.||.+.+++.||.||+.+.+.++... .....+.+++.+
T Consensus 19 ~~~DPyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~ 71 (123)
T cd04025 19 GTSDPFVRVFYN-----G---QTLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWD 71 (123)
T ss_pred CCcCceEEEEEC-----C---EEEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECC
Confidence 357999999872 2 2468999999999999998888775433 344567777765
No 198
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=90.30 E-value=0.41 Score=45.33 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=49.7
Q ss_pred EEEEEEec-C--CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe-
Q 004056 396 LAITVLEE-S--AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ- 471 (776)
Q Consensus 396 LsL~~~~~-~--~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~- 471 (776)
|.+.+..+ + .+..+|||+++.+. +. ++.||.++ ++.||+||+.+.+........ ...+.+++.+..
T Consensus 6 L~V~Vi~A~~L~~~~~~DPYv~v~l~-----~~--~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~~~~ 75 (126)
T cd08400 6 LQLNVLEAHKLPVKHVPHPYCVISLN-----EV--KVARTKVR-EGPNPVWSEEFVFDDLPPDVN--SFTISLSNKAKRS 75 (126)
T ss_pred EEEEEEEeeCCCCCCCCCeeEEEEEC-----CE--eEEEeecC-CCCCCccCCEEEEecCCCCcC--EEEEEEEECCCCC
Confidence 44444544 2 23467999999882 21 23567764 579999999888764332222 223455554422
Q ss_pred -eee-eEE-Ee----cCCcccccccccccCC
Q 004056 472 -QET-GIW-VH----QPGSEVAQTWEPRKGK 495 (776)
Q Consensus 472 -~~~-gv~-~~----~pg~~~~~~W~~~~~~ 495 (776)
.+. |.. +. .+| ++..+|-++.+.
T Consensus 76 ~d~~iG~v~i~l~~l~~~-~~~~~W~~L~~~ 105 (126)
T cd08400 76 KDSEIAEVTVQLSKLQNG-QETDEWYPLSSA 105 (126)
T ss_pred CCCeEEEEEEEHhHccCC-CcccEeEEcccC
Confidence 121 433 22 343 345788888764
No 199
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.21 E-value=0.53 Score=44.26 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=41.5
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
....|||+++++. + .++||.+.+++.||+||+.+.+.+...........+.+++.+.
T Consensus 12 ~g~~Dpyv~v~~~-----~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~ 68 (127)
T cd08373 12 KGKGDRIAKVTFR-----G---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK 68 (127)
T ss_pred CCCCCCEEEEEEC-----C---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC
Confidence 3468999999872 2 2578999999999999998887764332344556777787764
No 200
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=89.97 E-value=1 Score=44.95 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=57.7
Q ss_pred CCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeecc--CCCCCEEEEEEeecCCCC-CCceeEEEEecCcc
Q 004056 304 GLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374 (776)
Q Consensus 304 G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~~--~e~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L 374 (776)
..+|-||.+.+ +.+ ..+|..+.-+..+.|||...|+|.- ......|.|+|||.+..+ ...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677777765 332 2355555545678999998888763 333457999999987664 77999999998875
Q ss_pred cCCCccceeeecCCCCceEEEEEEE
Q 004056 375 RDGQRHDMWIPLQNIKIGRLHLAIT 399 (776)
Q Consensus 375 ~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (776)
.. + | ++|...+.+-
T Consensus 108 ~g------~--L---r~G~~~l~lw 121 (159)
T cd08397 108 DG------T--L---RRGRQKLRVW 121 (159)
T ss_pred CC------c--E---ecCCEEEEEE
Confidence 31 1 2 3677777764
No 201
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=89.95 E-value=0.42 Score=47.30 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec--CeeeeeEE-E--e
Q 004056 405 AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQETGIW-V--H 479 (776)
Q Consensus 405 ~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~--G~~~~gv~-~--~ 479 (776)
....+|||+++.+. +. +..||.+.+++.||+||+.+.+.++.. .....+.+.+.+ |...-|.. + .
T Consensus 54 ~~g~sDPYv~V~l~-----~~--~~~rT~v~~~~~nP~WnE~F~~~~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~ 123 (158)
T cd04015 54 GKITSDPYATVDLA-----GA--RVARTRVIENSENPVWNESFHIYCAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVE 123 (158)
T ss_pred CCCCcCeEEEEEEC-----Ce--EeeEEEEeCCCCCCccceEEEEEccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhH
Confidence 34568999999872 22 235888889999999999877655422 123456666654 22222433 1 1
Q ss_pred c-CCcccccccccccCCCCCc
Q 004056 480 Q-PGSEVAQTWEPRKGKNRRL 499 (776)
Q Consensus 480 ~-pg~~~~~~W~~~~~~~r~~ 499 (776)
. ..++...+|-++.+..++|
T Consensus 124 ~l~~g~~~~~w~~L~~~~~~~ 144 (158)
T cd04015 124 DLLSGEPVEGWLPILDSNGKP 144 (158)
T ss_pred HccCCCCcceEEECcCCCCCC
Confidence 1 1233457898887765544
No 202
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=89.77 E-value=0.5 Score=43.56 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=39.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. + .+.||.+.+++.||+||+.+.+.+... ......+.+++.+.
T Consensus 19 ~~~dPyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~ 72 (116)
T cd08376 19 GLSDPYVKFRLG-----N---EKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDT 72 (116)
T ss_pred CCCCcEEEEEEC-----C---EeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCC
Confidence 457999999872 2 357889999999999999877766533 23345666777664
No 203
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=89.65 E-value=0.58 Score=45.84 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=39.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+. + .++||.+.+++.||+||+.+.+.++.. ..+..+.+++.+
T Consensus 20 ~~sDPYV~v~~g-----~---~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 20 TSSDPYVVLTLG-----N---QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKD 71 (145)
T ss_pred CCcCcEEEEEEC-----C---EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECC
Confidence 468999998772 2 368899999999999999887776532 344567777766
No 204
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=89.62 E-value=0.56 Score=42.71 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=39.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. + +++||.+.+++.||+||+.+.+.+..... ....+.+++.+.
T Consensus 19 ~~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~--~~l~v~v~d~~~ 72 (105)
T cd04050 19 KEPSPYVELTVG-----K---TTQKSKVKERTNNPVWEEGFTFLVRNPEN--QELEIEVKDDKT 72 (105)
T ss_pred CCCCcEEEEEEC-----C---EEEeCccccCCCCCcccceEEEEeCCCCC--CEEEEEEEECCC
Confidence 468999999872 2 46788899999999999988887754322 234566666654
No 205
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=89.49 E-value=0.68 Score=43.91 Aligned_cols=77 Identities=8% Similarity=0.039 Sum_probs=48.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee---
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH--- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~--- 479 (776)
...|||+++.+. +++ ..||.+++++.||.||+.+-+.++ ......+++++.+. ..+- |.+ +.
T Consensus 33 g~~dpyv~v~~~-----~~~--~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 33 QLLDPYVSIDVD-----DTH--IGKTSTKPKTNSPVWNEEFTTEVH----NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred cCcCcEEEEEEC-----CEE--EeEEeEcCCCCCCCcceeEEEEcC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 357999999872 322 357888888999999998887775 22345566666542 1122 443 22
Q ss_pred -cC-CcccccccccccC
Q 004056 480 -QP-GSEVAQTWEPRKG 494 (776)
Q Consensus 480 -~p-g~~~~~~W~~~~~ 494 (776)
.. +++....|.++..
T Consensus 102 l~~~~~~~~~~w~~L~~ 118 (132)
T cd04014 102 LIQRGSGSFDLWVDLEP 118 (132)
T ss_pred hcccCCCcccEEEEccC
Confidence 23 2455688888863
No 206
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=89.41 E-value=0.27 Score=46.31 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=41.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
..+|||+++.+. + ..+++||.+.+++.||+||+.+.+.+... .....+.+++.+..
T Consensus 16 g~~dpyv~v~~~-----~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~ 71 (126)
T cd08678 16 GSSNPYCVLEMD-----E-PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKK 71 (126)
T ss_pred CCcCCEEEEEEC-----C-CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCC
Confidence 468999999872 1 12457999999999999999888877432 23456777777654
No 207
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.31 E-value=1.3 Score=44.44 Aligned_cols=104 Identities=23% Similarity=0.318 Sum_probs=69.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeec--C--CCCCcceeeEEEeec--cCCCCCEEEEE
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQR--K--TLSPKWHEEFNIPIS--TWDSPNVLVIE 352 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvik--k--TlNP~WnEtF~f~V~--~~e~~~~L~V~ 352 (776)
..+.|+|..+.+++........|-||.+.| +.+ ...|+... + ...+.|||...|++. +......|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 458899999999988664456788888765 443 23444321 1 235789999888875 22334579999
Q ss_pred EeecCCCC----------CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEE
Q 004056 353 VRDKDHFV----------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399 (776)
Q Consensus 353 VyD~D~~~----------Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (776)
+|+....+ +..||.+.++|-+... .| .+|...|.+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~lW 133 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGLW 133 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEec
Confidence 99976543 4689999998876432 12 2577777664
No 208
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.23 E-value=3.1 Score=37.95 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=58.9
Q ss_pred CCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceee
Q 004056 306 ADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWI 384 (776)
Q Consensus 306 sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~ 384 (776)
++-.+.+.+.+ ...+|.-... .+..|++.|.|.+.. .+.|.|.||-+|. ..+-|-..+.|.+. .+..-+
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR---sRELEI~VywrD~--RslCav~~lrLEd~----~~~~~~ 78 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER---SRELEIAVYWRDW--RSLCAVKFLKLEDE----RHEVQL 78 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec---ccEEEEEEEEecc--hhhhhheeeEhhhh----ccccee
Confidence 67788888877 5666665433 478999999999874 5789999998876 34556666777763 233445
Q ss_pred ecCCCCceEEEEEEEE
Q 004056 385 PLQNIKIGRLHLAITV 400 (776)
Q Consensus 385 ~L~~~~~GeI~LsL~~ 400 (776)
+|+ .+|.+...++|
T Consensus 79 ~le--pqg~l~~ev~f 92 (98)
T cd08687 79 DME--PQLCLVAELTF 92 (98)
T ss_pred ccc--cccEEEEEEEe
Confidence 555 37888777776
No 209
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.11 E-value=3.3 Score=42.16 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=44.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe---EEEeeeecCCCCCcceeeEEEeecc--CCCCCEEEEEEeecC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY---RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKD 357 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~---~~kTkvikkTlNP~WnEtF~f~V~~--~e~~~~L~V~VyD~D 357 (776)
.++|+|..+.. +..+......-||.+.| +.+ ..+|....-+.+|.|||...|++.- ......|.|.||+..
T Consensus 11 ~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 46777877763 33222222335666544 432 2356665567789999998888663 333457999999973
No 210
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=88.95 E-value=0.43 Score=43.60 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=39.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCC----CCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS----PKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~----~~~~d~~~vi~~~G 470 (776)
..+|||+++++..+ .++...++||.+.+++.||+|| .+ .++.... ......+.+++++.
T Consensus 19 ~~~DPyv~v~~~~~--~~~~~~~~kT~vi~~t~nP~Wn-~f--~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 19 GKSDPFLEISRQSE--DGTWVLVYRTEVIKNTLNPVWK-PF--TIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred CCCCeeEEEEEECC--CCCEEEEEeeeEeccCCCCceE-EE--EEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 46899999987422 2244567899999999999999 32 2322221 13456788888864
No 211
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=88.84 E-value=0.53 Score=44.32 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=39.0
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
.+|||+++.+. + .++||.+.+++.||+||+.+.+.+.. .......+.+++.+.
T Consensus 16 ~~Dpyv~v~l~-----~---~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~ 68 (121)
T cd08378 16 SNDPVVEVKLG-----N---YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDK 68 (121)
T ss_pred cCCCEEEEEEC-----C---ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCC
Confidence 68999999873 1 36789999999999999988776532 233445677777654
No 212
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=88.52 E-value=0.63 Score=43.01 Aligned_cols=78 Identities=9% Similarity=-0.005 Sum_probs=46.8
Q ss_pred ccCCCcccccccccCCCCcccccccceee-cCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee--eEE-E--ec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET--GIW-V--HQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vk-k~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~--gv~-~--~~ 480 (776)
..+|||+++.+. + .++||.+. +++.||+||+.+.+.++.. ......+.+++.+...+. |-. + ..
T Consensus 20 ~~~dpyv~v~~~-----~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~~~~~iG~~~~~l~~ 89 (118)
T cd08681 20 DKQDPYCVLRIG-----G---VTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDKRKPDLIGDTEVDLSP 89 (118)
T ss_pred CCCCceEEEEEC-----C---CccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCCCCcceEEEEEecHH
Confidence 357999999872 2 34667665 4579999999888877643 223456777777643222 433 1 11
Q ss_pred -CCcccccccccccC
Q 004056 481 -PGSEVAQTWEPRKG 494 (776)
Q Consensus 481 -pg~~~~~~W~~~~~ 494 (776)
.......+|-++..
T Consensus 90 ~~~~~~~~~w~~L~~ 104 (118)
T cd08681 90 ALKEGEFDDWYELTL 104 (118)
T ss_pred HhhcCCCCCcEEecc
Confidence 11223467776654
No 213
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=88.46 E-value=1.1 Score=41.79 Aligned_cols=55 Identities=13% Similarity=-0.040 Sum_probs=38.2
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
....|||+++.+. + .+.||.+.+++.||.||+.+.+.+.. .......+.+++.+.
T Consensus 21 ~~~~dPyv~v~~~-----~---~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~ 75 (128)
T cd04024 21 KGKSDPYAILSVG-----A---QRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDR 75 (128)
T ss_pred CCCcCCeEEEEEC-----C---EEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCC
Confidence 3467999988762 1 35789999999999999877665543 233445666676653
No 214
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=88.38 E-value=0.65 Score=44.76 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=37.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+. + .+.||.+.+++.||+||+.+.+.+.. .......+.+++.+
T Consensus 34 g~~DPYv~v~~~-----~---~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d 86 (136)
T cd08375 34 GKSDPYCEVSMG-----S---QEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRD 86 (136)
T ss_pred CCcCcEEEEEEC-----C---EeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEEECC
Confidence 468999998872 1 35789999999999999987776532 22234456677765
No 215
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=88.13 E-value=0.99 Score=42.29 Aligned_cols=53 Identities=9% Similarity=-0.053 Sum_probs=37.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+ .++ +..||.+.+++.||+||+.+.+.++.. .....+.+++.+
T Consensus 19 g~~DPYv~v~~-----~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~ 71 (121)
T cd04054 19 GSSDPYCIVKV-----DNE--VIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDED 71 (121)
T ss_pred CCCCceEEEEE-----CCE--eeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECC
Confidence 45799999876 222 236888889999999999888776432 134456666665
No 216
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=87.82 E-value=0.71 Score=43.86 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=48.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecC-CCceEEEecccccCCCCCCCCCCCceEEEEec--Ceeee-eEE-Ee--
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET-GIW-VH-- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~-t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~--G~~~~-gv~-~~-- 479 (776)
..+|||+++.+ ++ .+.||.+.++ +.||+||+.+.+.++.. .....+++++.+ +..+- |-. +.
T Consensus 20 g~sDPYv~i~l-----g~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~ 88 (121)
T cd04016 20 TRMDPYCRIRV-----GH---AVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERAFTMDERIAWTHITIP 88 (121)
T ss_pred CCCCceEEEEE-----CC---EEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCCCcCCceEEEEEEECc
Confidence 46899999987 22 2357777655 79999999988877542 234567777776 22222 322 21
Q ss_pred ---cCCcccccccccccCC
Q 004056 480 ---QPGSEVAQTWEPRKGK 495 (776)
Q Consensus 480 ---~pg~~~~~~W~~~~~~ 495 (776)
.+| .....|-++.++
T Consensus 89 ~~~~~g-~~~~~W~~L~~~ 106 (121)
T cd04016 89 ESVFNG-ETLDDWYSLSGK 106 (121)
T ss_pred hhccCC-CCccccEeCcCc
Confidence 233 335888887663
No 217
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=87.82 E-value=0.83 Score=42.70 Aligned_cols=56 Identities=11% Similarity=-0.067 Sum_probs=38.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. ++ ..++.||.+.+++.||.||+.+.+.++.. ......+.+++.+
T Consensus 20 ~~~Dpyv~v~~~----~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d 75 (126)
T cd04043 20 GLSDPYVTLVDT----NG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRS 75 (126)
T ss_pred CCCCceEEEEEC----CC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECC
Confidence 467999998752 11 12357888999999999999888776543 2234456667665
No 218
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=86.60 E-value=0.81 Score=44.13 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=41.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC-------------CCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-------------KSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~-------------~~~~~~d~~~vi~~~G 470 (776)
...|||+++++.. . .+..++||.+.+++.||+||+.+.+.+... +.......+.+++.+.
T Consensus 17 g~~dPyv~v~~~~---~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~ 89 (137)
T cd08675 17 GTCDPFARVTLNY---S-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASM 89 (137)
T ss_pred CCCCcEEEEEEec---C-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCc
Confidence 4579999998842 1 223468999999999999999887776433 2244455666666653
No 219
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=86.26 E-value=0.92 Score=42.64 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=39.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++++. + ..++||.+.+++.||.||+.+.+.++. .....+.+++.+
T Consensus 19 ~~~dpyv~v~~~-----~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~ 70 (123)
T cd08382 19 RLPDPFAVITVD-----G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQK 70 (123)
T ss_pred CCCCcEEEEEEC-----C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECC
Confidence 357999998872 2 245789999999999999887777653 345667777765
No 220
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=86.12 E-value=1 Score=42.02 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=38.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++.+ +++ ...||.+.+++.||+||+.+.+.+.. . .....+.+++.+.
T Consensus 19 g~~Dpyv~v~~-----~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~ 72 (121)
T cd04042 19 GTSDPYVKFKY-----GGK--TVYKSKTIYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDR 72 (121)
T ss_pred CCCCCeEEEEE-----CCE--EEEEeeeccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCC
Confidence 46899999876 232 34678888899999999887776532 1 2346677777764
No 221
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=84.69 E-value=1.9 Score=40.73 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=37.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++... + .+.||.+.+++.||+||+.+.+.... ......+.+++.+
T Consensus 22 g~~dPyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~ 73 (126)
T cd04046 22 GGADPYVIIKCE-----G---ESVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSN 73 (126)
T ss_pred CCcCccEEEEEC-----C---EEEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECC
Confidence 468999998762 2 24789999999999999987665431 2344567777765
No 222
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=84.42 E-value=2.7 Score=49.99 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=110.3
Q ss_pred cceeeeeeeecCCCCCEEeeEEEEecCCC----------C-------------CeEEEEEEEEEeeCCCcchheehhhhh
Q 004056 115 AKKALVQHLYLGRNPPMLTEMRVLRQSND----------D-------------DHMVLELGMNFLTADDMSAILAVKLRK 171 (776)
Q Consensus 115 i~~l~~~~ftLGs~PPrI~~Vrv~~~~~~----------~-------------d~vilDldis~~~~~D~si~l~v~l~~ 171 (776)
+..+.+.++-||.+-|.+++.+++.-+.. + .-+.+=+++.|.|..--++... +
T Consensus 146 L~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~--s-- 221 (1051)
T KOG3532|consen 146 LQEIRIRELELGTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVS--T-- 221 (1051)
T ss_pred hcccceehhhhccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCc--c--
Confidence 55677999999999999999999741110 0 1123344566654221111111 1
Q ss_pred hcCcceeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceEEEEEeeccccCCccccCcchHHHHHHHHHHHhh
Q 004056 172 RLGFGMWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFE 251 (776)
Q Consensus 172 rlG~G~~~~i~V~~l~~~G~lRV~L~L~~~~P~vg~v~vsFle~P~idf~lkpl~~~G~dV~~iPgLs~~I~~~I~~~l~ 251 (776)
-++.| ..+.|+-.+++|.+|+.+.-.+. - .-+++|+..|.+..+++.- ..++-| .--|.+.|...++.++.
T Consensus 222 ~~~kk--~S~~iKl~~l~Gm~r~~~~r~py-~---hw~~sf~G~P~~e~di~s~--~qg~qL-Q~~I~q~i~~~ir~~~~ 292 (1051)
T KOG3532|consen 222 IIAKK--ASLSVKITKLTGMVRVILSRQPY-H---HWTFSFVGQPIFETDINSQ--IQGHQL-QRLIPQIIKEAIRRSLQ 292 (1051)
T ss_pred ccccC--CceeEEEEEeccceeEEEEeccc-e---eeeeeeccCchhhhhhHHH--HHHHHH-HHHhHHHHHHHHHHHHH
Confidence 11112 24556778999999998753332 2 2378999999877766422 111111 11245566777777888
Q ss_pred hcccCCceeeecccccCC-CC--C-CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC
Q 004056 252 QTLVEPNMLVVDVDKFAS-PQ--P-GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP 316 (776)
Q Consensus 252 ~~LV~Pn~l~Idl~~~~s-~~--~-~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~ 316 (776)
....|||+. +.+-.++- +. . +.--++..-.+.|.+.|++.++..|.. .++...-||.+.+.+
T Consensus 293 rKhT~pnyK-~ry~pff~~~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 293 RKHTWPNYK-IRYRPFFPNPIFQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred hhccCcchh-hhccccccCcccccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 889999853 22222221 11 1 000112224467999999999988854 567888999999865
No 223
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=83.88 E-value=1.7 Score=43.66 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=38.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
.++|||+.+.+ ++ ++-||.+.++..||+||+.+.+.++- ...+..+.|+|.|
T Consensus 25 ~sSDPyVVl~l-----g~---q~lkT~~v~~n~NPeWNe~ltf~v~d---~~~~lkv~VyD~D 76 (168)
T KOG1030|consen 25 GSSDPYVVLEL-----GN---QKLKTRVVYKNLNPEWNEELTFTVKD---PNTPLKVTVYDKD 76 (168)
T ss_pred cCCCCeEEEEE-----CC---eeeeeeeecCCCCCcccceEEEEecC---CCceEEEEEEeCC
Confidence 57899999877 23 35677789999999999988886642 2345566777776
No 224
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=83.82 E-value=1.7 Score=43.10 Aligned_cols=39 Identities=5% Similarity=-0.024 Sum_probs=28.2
Q ss_pred cccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 429 SNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 429 KKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
.+||.+.+++.||+||+.+.+.+.. .......+.+++.+
T Consensus 90 ~~kT~v~~~tlnP~WnE~F~f~v~~--~~~~~L~i~V~D~d 128 (153)
T cd08676 90 IKVTEVKPQTLNPVWNETFRFEVED--VSNDQLHLDIWDHD 128 (153)
T ss_pred cEecceecCCCCCccccEEEEEecc--CCCCEEEEEEEecC
Confidence 3689999999999999887776632 22345567777775
No 225
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=83.67 E-value=1.3 Score=43.47 Aligned_cols=54 Identities=11% Similarity=-0.044 Sum_probs=35.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecC-CCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~-t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++.+. + ++.||.+.++ +.||+||+.+.+.++.. ......+.+.+.++
T Consensus 19 g~sDPYV~v~l~-----~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~ 73 (150)
T cd04019 19 RVPEVFVKAQLG-----N---QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG 73 (150)
T ss_pred CCCCeEEEEEEC-----C---EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence 468999999882 2 2456666655 69999999887766421 12344566666654
No 226
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=82.81 E-value=2.2 Score=39.50 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=38.4
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..|||+++.+.. . .+++||.+.+++.||.||+.+.+.+. .......+.+++.+.
T Consensus 23 ~~dpyv~v~~~~-----~-~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 23 TVDPYVTFSISN-----R-RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND 76 (124)
T ss_pred CCCCeEEEEECC-----C-CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence 479999998731 1 35688999999999999988776654 123345666777653
No 227
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=82.79 E-value=4.2 Score=39.35 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=47.1
Q ss_pred EeeeecCC-CCCcceeeEEEeec--cCCCCCEEEEEEeecCCCC-C----CceeEEEEecCcccCCCccceeeecCCCCc
Q 004056 320 RTKTQRKT-LSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDHFV-D----DTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (776)
Q Consensus 320 kTkvikkT-lNP~WnEtF~f~V~--~~e~~~~L~V~VyD~D~~~-D----d~LG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (776)
.|+...-+ .++.|||...|++. +......|.|.||..+... . ..||.+.++|-+... .| .+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~--------~L---~~ 91 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG--------QL---RQ 91 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS--------BB---EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC--------cc---cC
Confidence 56655555 79999998888765 4444568999999988776 3 699999999887532 11 26
Q ss_pred eEEEEEE
Q 004056 392 GRLHLAI 398 (776)
Q Consensus 392 GeI~LsL 398 (776)
|...|.+
T Consensus 92 G~~~L~l 98 (142)
T PF00792_consen 92 GPQKLSL 98 (142)
T ss_dssp EEEEEE-
T ss_pred CCEEEEE
Confidence 8887777
No 228
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=82.75 E-value=1.9 Score=40.80 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=36.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. + .+.||.+.+++.||.||+.+.+.+... .....+.+++.+
T Consensus 20 g~~DPyv~v~~~-----~---~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d 71 (127)
T cd04027 20 GTSDPYVTVQVG-----K---TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDED 71 (127)
T ss_pred CCcCcEEEEEEC-----C---EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECC
Confidence 457999998772 1 246888889999999998877654311 224556677765
No 229
>PLN03008 Phospholipase D delta
Probab=82.31 E-value=1.6 Score=53.51 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=60.6
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee--eEE-Ee---
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET--GIW-VH--- 479 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~--gv~-~~--- 479 (776)
..++|||+++.+- ++ ++.||.+.+++.||+||+.+.+.++- ......|+|.|.+.-... |.. +.
T Consensus 74 ~~tSDPYV~I~Lg-----~~--rv~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~gaD~IG~a~IPL~~ 143 (868)
T PLN03008 74 VITSDPYVTVVVP-----QA--TLARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVFGAQIIGTAKIPVRD 143 (868)
T ss_pred cCCCCceEEEEEC-----Cc--ceeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcCCccCCceeEEEEEEHHH
Confidence 3578999999882 22 24589999999999999988887653 234678888887733222 433 21
Q ss_pred -cCCcccccccccccCCCCCcc---ceEeec
Q 004056 480 -QPGSEVAQTWEPRKGKNRRLD---TLVRRV 506 (776)
Q Consensus 480 -~pg~~~~~~W~~~~~~~r~~~---~q~~~~ 506 (776)
.+| +....|.++++..++|. +++|.+
T Consensus 144 L~~G-e~vd~Wl~Ll~~~~kp~k~~~kl~v~ 173 (868)
T PLN03008 144 IASG-ERISGWFPVLGASGKPPKAETAIFID 173 (868)
T ss_pred cCCC-CceEEEEEccccCCCCCCCCcEEEEE
Confidence 244 33579999888655444 677765
No 230
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=82.08 E-value=2.2 Score=40.09 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=35.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. ++ .++||.+.+++.||.||+.+.+.+... .....+.+++.+
T Consensus 20 g~~DPYv~v~~~-----~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~ 72 (120)
T cd04045 20 GKIDPYVRVLVN-----GI--VKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYE 72 (120)
T ss_pred CCcCCEEEEEEC-----CE--EeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECC
Confidence 468999999872 22 457888889999999998776654322 123455556554
No 231
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=81.65 E-value=2.2 Score=39.22 Aligned_cols=52 Identities=12% Similarity=-0.091 Sum_probs=35.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. + .+.||.+.+++.||.|++.+.+.+... .....+.+++.+
T Consensus 20 ~~~dPyv~v~~~-----~---~~~~T~~~~~t~nP~W~e~f~~~~~~~---~~~l~~~v~d~~ 71 (119)
T cd08377 20 GKSDPFCVLELV-----N---ARLQTHTIYKTLNPEWNKIFTFPIKDI---HDVLEVTVYDED 71 (119)
T ss_pred CCCCcEEEEEEC-----C---EeeecceecCCcCCccCcEEEEEecCc---CCEEEEEEEECC
Confidence 357999998773 1 136888889999999998877765321 233455566654
No 232
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.40 E-value=5.4 Score=40.36 Aligned_cols=75 Identities=12% Similarity=0.206 Sum_probs=43.3
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCCC----CCceeEEEEecCcccCCCccceeeecCCCCc
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV----DDTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~~----Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (776)
..+.|.+...+.+|.|+|+|.+.++... ....|.|++|+..... ...+|.+.+||-+ . +.. + ..
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~-g~~------i---~d 127 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-N-GTI------I---QD 127 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--T-S-B-----------S
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-C-CeE------e---cC
Confidence 4578888888999999999999998532 3457999999976643 2689999999987 3 221 1 25
Q ss_pred eEEEEEEEEEe
Q 004056 392 GRLHLAITVLE 402 (776)
Q Consensus 392 GeI~LsL~~~~ 402 (776)
|+..|-+....
T Consensus 128 g~~~L~v~~~~ 138 (184)
T PF14429_consen 128 GEHELPVYKYD 138 (184)
T ss_dssp EEEEEEEEE--
T ss_pred CCEEEEEEEcc
Confidence 77777775444
No 233
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=81.39 E-value=13 Score=38.54 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=41.9
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCC--C---CCceeEEEEecC
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF--V---DDTLGDCTINIS 372 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~--~---Dd~LG~v~I~L~ 372 (776)
..++|-|...+.+|.|+|++.+.++... ....|.|++++.... + ...+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4688999888999999999999988532 345799999886543 1 246777777764
No 234
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=81.16 E-value=2 Score=39.55 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=46.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eeeeEE-Ee----
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QETGIW-VH---- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~gv~-~~---- 479 (776)
+.+|||+++.+. ++ ..+||.+++++.||+||+.+.+.++.. ......+.+++.+.- ..-|.. +.
T Consensus 11 G~~dPYv~v~v~-----~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l 81 (111)
T cd04052 11 GLLSPYAELYLN-----GK--LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDRHDPVLGSVSISLNDL 81 (111)
T ss_pred CCCCceEEEEEC-----CE--EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCCCCCeEEEEEecHHHH
Confidence 457999999872 22 236777888899999998877665422 233345666666542 111433 21
Q ss_pred cCCcccccccccccC
Q 004056 480 QPGSEVAQTWEPRKG 494 (776)
Q Consensus 480 ~pg~~~~~~W~~~~~ 494 (776)
...++....|-++.+
T Consensus 82 ~~~~~~~~~w~~L~~ 96 (111)
T cd04052 82 IDATSVGQQWFPLSG 96 (111)
T ss_pred HhhhhccceeEECCC
Confidence 122333467877765
No 235
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.15 E-value=7.6 Score=35.50 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=45.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeecc--CCCCCEEEEEEeecC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKD 357 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~~--~e~~~~L~V~VyD~D 357 (776)
+.+.+...++..-......++-||.+.+ +.+ ...|+.+.-...+.|||...|++.- .+....|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666654433333578888866 442 3345554445568999998887653 233457999999864
No 236
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=81.07 E-value=2.2 Score=40.32 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=37.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+ +++ .++||.+.+++.||.||+.+.+.+.. .....+.+++.+.
T Consensus 20 ~~~dPyv~v~~-----~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~ 72 (125)
T cd04021 20 FKPDPYVEVTV-----DGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT 72 (125)
T ss_pred CCCCeEEEEEE-----CCc--ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC
Confidence 35799999877 222 46789999999999999887776542 2345566666653
No 237
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=80.41 E-value=4.4 Score=39.10 Aligned_cols=52 Identities=6% Similarity=-0.107 Sum_probs=36.4
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
+...+||+.+.+- + .|.||.+.++ .||.||+.++|.+.- ......+.+++.+
T Consensus 17 ~~~~dPYV~Ik~g-----~---~k~kT~v~~~-~nP~WnE~F~F~~~~---~~~~L~v~V~dkd 68 (127)
T cd08394 17 PDKFNTYVTLKVQ-----N---VKSTTIAVRG-SQPCWEQDFMFEINR---LDLGLVIELWNKG 68 (127)
T ss_pred CCCCCCeEEEEEC-----C---EEeEeeECCC-CCCceeeEEEEEEcC---CCCEEEEEEEeCC
Confidence 3456899998772 2 2567777777 599999999998742 2233677777765
No 238
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=79.68 E-value=2.1 Score=36.05 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=40.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...+||+++.+... .. .+.||.+++.+.+|.|++.+.+.+....... ..+.+++.+.
T Consensus 18 ~~~~~yv~v~~~~~---~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~--l~~~V~~~~~ 74 (85)
T PF00168_consen 18 GKPDPYVRVSVNGS---ES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS--LSFEVWDKDS 74 (85)
T ss_dssp SSBEEEEEEEEETT---TC--EEEEECCBSSBSSEEEEEEEEEEESHGCGTE--EEEEEEEETS
T ss_pred Ccccccceeeccee---ee--eeeeeeeeeccccceeeeeeeeeeecccccc--eEEEEEECCC
Confidence 45789999887422 11 5689999999999999988777754444333 6677777653
No 239
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=79.47 E-value=2.9 Score=39.07 Aligned_cols=82 Identities=11% Similarity=-0.056 Sum_probs=46.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeec-CCCceEEEecccccCCCCCC-CCCCCceEEEEecCeee---eeEE-Ee-
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKS-PKVADNFEPINIEGQQE---TGIW-VH- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk-~t~nP~~n~~~a~~Lp~~~~-~~~~d~~~vi~~~G~~~---~gv~-~~- 479 (776)
...|||+++.+. + .+++|.+.+ ++.||.||+.+.+.++.... ......+.+++.+.... -|.. +.
T Consensus 20 ~~~dpyv~v~~~-----~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l 91 (124)
T cd04049 20 GKIDPYVIIQCR-----T---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91 (124)
T ss_pred CCcCceEEEEEC-----C---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEh
Confidence 357999999772 1 235677766 48999999988887755432 12234556666653211 1332 11
Q ss_pred --cCCcccccccccccCCC
Q 004056 480 --QPGSEVAQTWEPRKGKN 496 (776)
Q Consensus 480 --~pg~~~~~~W~~~~~~~ 496 (776)
--..+....|.++..+.
T Consensus 92 ~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 92 KGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred HHhhhCCCCcCceEeeccc
Confidence 11123347777776643
No 240
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=79.03 E-value=2.5 Score=38.75 Aligned_cols=54 Identities=17% Similarity=0.075 Sum_probs=37.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. ++ +.++|.+.+++.||+||+.+.+.++.. ......+.+++.+
T Consensus 18 ~~~dpyv~v~~~-----~~--~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~ 71 (115)
T cd04040 18 GKSDPFVKFYLN-----GE--KVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWD 71 (115)
T ss_pred CCCCCeEEEEEC-----CC--cceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCC
Confidence 357999998773 21 346888899999999998877766532 2233455566665
No 241
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.84 E-value=1.5 Score=42.59 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=32.8
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCc--eEEEecccccCCC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFAN--ETTDKGSFSSVSS 453 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~n--P~~n~~~a~~Lp~ 453 (776)
.+|||+|..|.. .+..+.||.+..++.| |.||..+.+..+.
T Consensus 24 ~sD~yVK~~L~~-----~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~ 66 (133)
T cd08374 24 MSDIYVKGWLDG-----LEEDKQKTDVHYRSLDGEGNFNWRFVFPFDY 66 (133)
T ss_pred ccCeEEEEEEcc-----CcccccccceEEecCCCCcEEeEEEEEeeec
Confidence 589999999842 2557789999999988 9999988876543
No 242
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=77.02 E-value=1.7 Score=40.03 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=37.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. + .+.||.+.+++.||+||+.+.+.+... ......+.+++.+.
T Consensus 26 g~~dPyv~v~~~-----~---~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~v~d~~~ 79 (121)
T cd08391 26 GKSDPYVIVRVG-----A---QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIELFDEDP 79 (121)
T ss_pred CCcCCEEEEEEC-----C---EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEEEEecCC
Confidence 357999999872 2 457899999999999998776655322 23345566677654
No 243
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=76.17 E-value=22 Score=36.57 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=42.0
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCC------C----CCceeEEEEecCc
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF------V----DDTLGDCTINISD 373 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~------~----Dd~LG~v~I~L~~ 373 (776)
..+.|.|...+.+|.|+|++.+.++... ....|.|+.|+.+.. . ...+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4678888888999999999999988432 345799999997521 1 2457777777654
No 244
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=74.29 E-value=12 Score=37.44 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=52.6
Q ss_pred CCcEEEEEeCC-eEEEeeeec--CCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccC
Q 004056 306 ADPYVKGQLGP-YRFRTKTQR--KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD 376 (776)
Q Consensus 306 sDPYVkv~Lg~-~~~kTkvik--kTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~ 376 (776)
.--|+++.++. +..+|+... ....=.|||.|.+.+.. .++.|.++||.....++..|+++.+|+-....
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 45689999987 455665533 33445678999999986 45789999999988779999999999876543
No 245
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=74.11 E-value=8.6 Score=39.56 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=41.6
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCCC---CCceeEEEEecC
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV---DDTLGDCTINIS 372 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~~---Dd~LG~v~I~L~ 372 (776)
..++|-|...+.+|.|+|++.+.++... ....|.|++++..... ...+|-+.+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 3678999999999999999999998532 2447999988854432 256777777764
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=73.22 E-value=0.85 Score=41.32 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=46.7
Q ss_pred cccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee-eEE---EecCCcccccccccc
Q 004056 429 SNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET-GIW---VHQPGSEVAQTWEPR 492 (776)
Q Consensus 429 KKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~-gv~---~~~pg~~~~~~W~~~ 492 (776)
..||+++++.+||+|.+.+.|.+...+++.+..-|.+....-.++. |=+ ....|.+...||.+.
T Consensus 36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCccceeeEEEeecccCCHHHhhhhhcC
Confidence 3789999999999999999998877778777777766663333333 332 335777778999873
No 247
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=73.21 E-value=5.8 Score=39.06 Aligned_cols=99 Identities=8% Similarity=-0.042 Sum_probs=57.7
Q ss_pred EEEEEEEEec-CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCee
Q 004056 394 LHLAITVLEE-SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ 472 (776)
Q Consensus 394 I~LsL~~~~~-~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~ 472 (776)
-.|.+.+.++ ++....++|+.+.|... +..||.++.++.||.|++.|.+..... .....+.+.+-++..
T Consensus 11 ~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~-------~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~~~~ 80 (146)
T cd04013 11 NSLKLWIIEAKGLPPKKRYYCELCLDKT-------LYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEccCCCCcCCceEEEEECCE-------EEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEccCcc
Confidence 3466667776 44445689999988422 235899999999999999888753221 122334443333221
Q ss_pred ------ee-eEE-Ee---cCCcccccccccccCCCCCccce
Q 004056 473 ------ET-GIW-VH---QPGSEVAQTWEPRKGKNRRLDTL 502 (776)
Q Consensus 473 ------~~-gv~-~~---~pg~~~~~~W~~~~~~~r~~~~q 502 (776)
+- |.. +. -.++....+|-|+.+....+..|
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~ 121 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG 121 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc
Confidence 11 332 21 12233458888888776555444
No 248
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=71.67 E-value=4.2 Score=54.72 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=45.8
Q ss_pred ceEEEEEEEEEec-CCC---ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccc--cCCCCCCCCCCCceE
Q 004056 391 IGRLHLAITVLEE-SAK---GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFS--SVSSEKSPKVADNFE 464 (776)
Q Consensus 391 ~GeI~LsL~~~~~-~~k---~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~--~Lp~~~~~~~~d~~~ 464 (776)
.|.+++++. .. +.. ..+|||+++.+- .-+++||.+.+++.||+||+++.+ +.|+ ...+..+.
T Consensus 1979 ~G~L~V~V~--~a~nl~~~~~~sdPyv~l~~g-------~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~---~~~~l~ie 2046 (2102)
T PLN03200 1979 PGSLTVTIK--RGNNLKQSMGNTNAFCKLTLG-------NGPPRQTKVVSHSSSPEWKEGFTWAFDSPP---KGQKLHIS 2046 (2102)
T ss_pred CcceEEEEe--eccccccccCCCCCeEEEEEC-------CCCcccccccCCCCCCCcccceeeeecCCC---CCCceEEE
Confidence 577766653 22 222 457999999872 124689999999999999998874 3332 23446778
Q ss_pred EEEec
Q 004056 465 PINIE 469 (776)
Q Consensus 465 vi~~~ 469 (776)
++|++
T Consensus 2047 v~d~d 2051 (2102)
T PLN03200 2047 CKSKN 2051 (2102)
T ss_pred EEecC
Confidence 88875
No 249
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=69.65 E-value=5.6 Score=36.94 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=38.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCC-ceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFA-NETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~-nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+... ..+...++||.+.+... ||.||+.+.+.+...+. ....+.+.+.+.
T Consensus 23 ~~~dpyv~v~l~~~--~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~--~~l~~~V~d~~~ 83 (128)
T cd00275 23 SIVDPYVEVEIHGL--PADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPEL--AFLRFVVYDEDS 83 (128)
T ss_pred CccCCEEEEEEEeC--CCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCe--EEEEEEEEeCCC
Confidence 45799999988422 11134678888877765 99999887776552221 233455666554
No 250
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=68.81 E-value=17 Score=36.75 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=41.3
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCC-----C-CCceeEEEEecCc
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF-----V-DDTLGDCTINISD 373 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~-----~-Dd~LG~v~I~L~~ 373 (776)
..++|-+..+ .+|.|+|+|.+.++... ....|.|++|+.... . ...+|.+.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3455555555 89999999999997432 345899999997633 2 5678888888775
No 251
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=68.58 E-value=8.4 Score=35.90 Aligned_cols=56 Identities=9% Similarity=-0.057 Sum_probs=37.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeec-CCCceEEEecccccCCCCCC--CCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKS--PKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk-~t~nP~~n~~~a~~Lp~~~~--~~~~d~~~vi~~~ 469 (776)
...|||+.+.+.. ..++||.+.+ ++.||.||+.+.+.++.... ......+.+++.+
T Consensus 19 ~~~dpYv~v~~~~-------~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 19 GKMKVYAVVWIDP-------SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred cCCceEEEEEECC-------CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 4579999988731 2356777764 57999999988887765432 2344556666654
No 252
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=59.51 E-value=29 Score=35.46 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=42.5
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCCC-------CCceeEEEEecCc
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV-------DDTLGDCTINISD 373 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~~-------Dd~LG~v~I~L~~ 373 (776)
..+.|.|...+.+|.|+|++.+.++... ....|.|++|+.+... ...+|.+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4678888889999999999999988432 3457999999865421 3457877777663
No 253
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.23 E-value=3 Score=49.92 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCceeEEEEecCcccC-CCccc
Q 004056 305 LADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHD 381 (776)
Q Consensus 305 ~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~-~~~~~ 381 (776)
.-+||+.+.+.- +...+.+.+.+..|.|+|+|.+.+.. ...+.|.||...... +.+.-.+.+...++.. .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~---~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA---GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec---CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 458898888764 34456667889999999999999774 457889999876443 4433344444344332 23456
Q ss_pred eeeecCCCCceEEEEEEEEEe
Q 004056 382 MWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 382 ~W~~L~~~~~GeI~LsL~~~~ 402 (776)
.|..++. .|+++..+.+..
T Consensus 104 ~w~~~~~--~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 104 LWVLIEE--LGTLLKPAALTG 122 (694)
T ss_pred hcccccc--ccceeeeecccC
Confidence 7888774 688887776655
No 254
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=56.90 E-value=22 Score=44.15 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=74.6
Q ss_pred CCcEEEEEeCC-eEEEeeeecCC-CCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccce
Q 004056 306 ADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM 382 (776)
Q Consensus 306 sDPYVkv~Lg~-~~~kTkvikkT-lNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~ 382 (776)
.++|+.+.+.. ...+|..+.+. .+|.|.+.|.+.+.. ....+.+.+-+.+..+ ...+|.+.++.-.+..+.....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h--~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH--KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc--cccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 58999999865 45577777776 699999999887765 3457999998888888 8999999999999998888889
Q ss_pred eeecCCCC-----ce-EEEEEEEEEec
Q 004056 383 WIPLQNIK-----IG-RLHLAITVLEE 403 (776)
Q Consensus 383 W~~L~~~~-----~G-eI~LsL~~~~~ 403 (776)
|+++.... .| .+++.+.|.+.
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEee
Confidence 98875421 22 35666666664
No 255
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=55.77 E-value=90 Score=35.04 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=76.4
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCc--ceeeEEEeeccCCCCCEEEEEEeecCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPK--WHEEFNIPISTWDSPNVLVIEVRDKDH 358 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~--WnEtF~f~V~~~e~~~~L~V~VyD~D~ 358 (776)
+...-.|.|.|.+-.++.. ...-|+.+..|...++|..+.-+..-. -.+...+.+.. ...+|++.||-...
T Consensus 54 nHRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKkL 126 (508)
T PTZ00447 54 NYRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTKL 126 (508)
T ss_pred ccceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEeccc
Confidence 3345678888888777653 346899999999888886554333222 23444444443 34689999999888
Q ss_pred CCCCceeEEEEecCc--ccCCCccceeeecCCC--CceEEEEEEE
Q 004056 359 FVDDTLGDCTINISD--LRDGQRHDMWIPLQNI--KIGRLHLAIT 399 (776)
Q Consensus 359 ~~Dd~LG~v~I~L~~--L~~~~~~~~W~~L~~~--~~GeI~LsL~ 399 (776)
.+..-||.+.+.++. +...-+...||.+... ..++|.|++-
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 888899999999885 2334467899999643 3567766663
No 256
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=50.78 E-value=49 Score=30.97 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=45.6
Q ss_pred EEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCC------CCCEEEEEEeecCCCCCCceeEEEEecCcccCCC--c
Q 004056 309 YVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWD------SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQ--R 379 (776)
Q Consensus 309 YVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e------~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~--~ 379 (776)
||.+.+-. +.+.|.++. ..+|.+|-+-.|.|...+ ....+.++++..-......+|.+.++|..+.... .
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 45555544 556677765 889999998888876422 2347999999876444789999999999987432 2
Q ss_pred cceeeecCC---CCceEEEEEEEE
Q 004056 380 HDMWIPLQN---IKIGRLHLAITV 400 (776)
Q Consensus 380 ~~~W~~L~~---~~~GeI~LsL~~ 400 (776)
......|.+ ..-|.|.+.++.
T Consensus 81 i~~~~~l~g~~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGEDFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS-TSEEEEEEEEE
T ss_pred EEEEEEEeccCCCeEEEEEEEEEe
Confidence 333334432 346776666554
No 257
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=42.72 E-value=5.8 Score=47.02 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=53.5
Q ss_pred eEEEEEEEEecCCCCCC----CCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 285 AYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D----~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
|....+++.|.++++-- ..-..+|++...++.+.++|+.-..+.+|+|||. .+++.+++....|...|.+++...
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~ 358 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELD 358 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccccc
Confidence 44555666776664321 1234579999999999999999999999999998 777776655555666665655544
No 258
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=42.43 E-value=20 Score=30.54 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=35.9
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+||+++.+.. .+ ...++|...++..||.||+.+.+.+.... .....+.+++..
T Consensus 20 ~~~~yv~v~~~~---~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~ 74 (101)
T smart00239 20 KSDPYVKVSLDG---DP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKD 74 (101)
T ss_pred CCCceEEEEEeC---Cc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecC
Confidence 468898887731 11 34578888888889999987777665443 333344555544
No 259
>PF15192 TMEM213: TMEM213 family
Probab=38.83 E-value=25 Score=30.68 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=15.9
Q ss_pred HHHHHHHhcchhHHHHHHHHh
Q 004056 18 LLWLLSYFDRCHPAAYFISLI 38 (776)
Q Consensus 18 ~~wllg~~g~s~~~llli~~~ 38 (776)
-.|+.+..|||++++.+|+++
T Consensus 45 yGWIAAAVGWSLwFLTLILLC 65 (82)
T PF15192_consen 45 YGWIAAAVGWSLWFLTLILLC 65 (82)
T ss_pred hhHHHHHHhHHHHHHHHHHHH
Confidence 369999999998666555554
No 260
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=38.57 E-value=60 Score=29.25 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcchhHHHHH-HHHhhheeeehhhHHHHHHHH
Q 004056 13 GIVLFLLWLLSYFDRCHPAAYF-ISLIYLYSVHDRYVMRLRRKV 55 (776)
Q Consensus 13 ~~vl~~~wllg~~g~s~~~lll-i~~~~l~~~~~r~~~rlr~~i 55 (776)
+++++++.++|.+-..+.++++ ++++|++| +-++..|+.+-+
T Consensus 13 ~~~~l~~~lvG~~~g~~~~~l~~~l~~~l~w-h~~~l~rL~~WL 55 (90)
T PF11808_consen 13 LLLLLAAALVGWLFGHLWWALLLGLLLYLFW-HLYQLYRLERWL 55 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3334555555544433333333 33445554 333444554444
No 261
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.31 E-value=69 Score=26.74 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=8.3
Q ss_pred ehhhHHHHHHHHHHHH
Q 004056 44 HDRYVMRLRRKVEFEE 59 (776)
Q Consensus 44 ~~r~~~rlr~~i~~e~ 59 (776)
.++..+++++++...+
T Consensus 46 ~r~~~~~~~k~l~~le 61 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLE 61 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556666555443
No 262
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=32.74 E-value=21 Score=44.09 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=54.0
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
..|.+.+.+.+|.+|.. ...-||...+.. .+.+|.++.+|..|.||+.|++++.. .+.+++..|+++
T Consensus 757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~---sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE---SQSSRLEKTEKS 828 (1112)
T ss_pred cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh---ccccchhhhccc
Confidence 45889999999999864 246788876633 57789999999999999999998763 467778888876
Q ss_pred C
Q 004056 358 H 358 (776)
Q Consensus 358 ~ 358 (776)
.
T Consensus 829 ~ 829 (1112)
T KOG4269|consen 829 T 829 (1112)
T ss_pred c
Confidence 4
No 263
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=31.16 E-value=54 Score=25.85 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 004056 50 RLRRKVEFEE 59 (776)
Q Consensus 50 rlr~~i~~e~ 59 (776)
+++++++..+
T Consensus 31 ~~~~~l~~~~ 40 (46)
T PF04995_consen 31 RLRKELKRLE 40 (46)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 264
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.66 E-value=96 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=22.0
Q ss_pred HHHHHHHHhcchhHHHHHHHHh---hheeeehhhHHHHH
Q 004056 17 FLLWLLSYFDRCHPAAYFISLI---YLYSVHDRYVMRLR 52 (776)
Q Consensus 17 ~~~wllg~~g~s~~~llli~~~---~l~~~~~r~~~rlr 52 (776)
+.+|+..+++++=.|..+++++ ..|+..++|.+++.
T Consensus 91 v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~ 129 (150)
T COG3086 91 LGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLA 129 (150)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567778988886665444443 34445567766554
No 265
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.54 E-value=2.9e+02 Score=26.08 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=47.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEE-EeeeecCCCCCcc-eeeEEEeecc-CCCCCEEEEEEeecCC--CC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRF-RTKTQRKTLSPKW-HEEFNIPIST-WDSPNVLVIEVRDKDH--FV 360 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~-kTkvikkTlNP~W-nEtF~f~V~~-~e~~~~L~V~VyD~D~--~~ 360 (776)
.|.++-+.-.++|..+.++.+.||++++-+.... .|....... ... ...+.+.+.. ......+.|.+|+... ..
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDP-KSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCC-CEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceecc-ccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 3444444556677666677889999999877544 222211111 111 1223333221 1122458888888763 33
Q ss_pred CCceeEEEEecCccc
Q 004056 361 DDTLGDCTINISDLR 375 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~ 375 (776)
.+.+.++.+.-.=+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 666777777654444
No 266
>PLN02223 phosphoinositide phospholipase C
Probab=23.07 E-value=49 Score=39.29 Aligned_cols=58 Identities=10% Similarity=-0.055 Sum_probs=37.8
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..|||+++.+..- .... .++||.+..+..||+||+.+.|.+-..+ -....|+|.++|-
T Consensus 434 ~~DpyV~VeI~Gv--p~D~-~~~kT~v~nNg~nPvWne~F~F~i~~PE--LAlLrf~V~D~D~ 491 (537)
T PLN02223 434 KPDLYVRISIAGV--PHDE-KIMKTTVKNNEWKPTWGEEFTFPLTYPD--LALISFEVYDYEV 491 (537)
T ss_pred CCCeEEEEEEeec--cCCc-ceeEEEeCCCCcCceecceeEEEEEccC--ceEEEEEEEecCC
Confidence 3689999987422 2222 3456777777899999988777653322 2345678888763
No 267
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.01 E-value=1.2e+02 Score=29.50 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=11.3
Q ss_pred CCccchHHHHHHHHHhC
Q 004056 70 KDSETVRWLNHAIEKMW 86 (776)
Q Consensus 70 ~d~EsveWLN~iL~~~W 86 (776)
.+.+.+.=+|.+|+++=
T Consensus 65 ~~~~~~~~l~~LLKr~a 81 (146)
T PF14316_consen 65 DDAEWLAALNELLKRVA 81 (146)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 55566667788777643
No 268
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=21.13 E-value=4.4e+02 Score=26.04 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=55.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccC-----------CCCCEEEEEEee
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-----------DSPNVLVIEVRD 355 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~-----------e~~~~L~V~VyD 355 (776)
|.|+-+.|-|.- .....|-|..+++.++.++|+......-=.++|.|.|.-... -....+.++++-
T Consensus 4 L~i~aVTCPGv~---L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVW---LCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeE---eCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 455555554432 234568999999999999998876666557789998863211 023467777776
Q ss_pred cCCCCCCceeEEEEecCccc
Q 004056 356 KDHFVDDTLGDCTINISDLR 375 (776)
Q Consensus 356 ~D~~~Dd~LG~v~I~L~~L~ 375 (776)
........|....-++.++.
T Consensus 81 l~~~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFL 100 (140)
T ss_pred EeCCCCcEEEEEeccccceE
Confidence 55544666666666666554
No 269
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=21.06 E-value=8e+02 Score=24.43 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=51.1
Q ss_pred EEEEEEecCCCCCCCCCCCCcEEEEEe--CC--------e-EEEeeeecCC-----CCCcceeeEEEeeccCC--CCCEE
Q 004056 288 RVEVVEASDMKPSDLNGLADPYVKGQL--GP--------Y-RFRTKTQRKT-----LSPKWHEEFNIPISTWD--SPNVL 349 (776)
Q Consensus 288 ~V~VieA~~L~~~D~~G~sDPYVkv~L--g~--------~-~~kTkvikkT-----lNP~WnEtF~f~V~~~e--~~~~L 349 (776)
.=.|..|.+.. ..+-||+..+ ++ . ...|++...+ -.=.||.-|++.+.... .--.|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34567777653 2356888765 22 3 5667765432 23578887777665322 11379
Q ss_pred EEEEeecCCCC-CCceeEEEEecC
Q 004056 350 VIEVRDKDHFV-DDTLGDCTINIS 372 (776)
Q Consensus 350 ~V~VyD~D~~~-Dd~LG~v~I~L~ 372 (776)
.|+||..|..+ +.+.|...+.|-
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeC
Confidence 99999999987 778877666654
No 270
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=20.50 E-value=2.4e+02 Score=27.55 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHH--HhcchhHHH
Q 004056 6 ISIMHHVGIVLFLLWLLS--YFDRCHPAA 32 (776)
Q Consensus 6 ~~~~~~~~~vl~~~wllg--~~g~s~~~l 32 (776)
.||..-+.++++++|+++ .|+||-.|-
T Consensus 14 s~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQ 42 (132)
T PF04120_consen 14 SPWAFVIAVAVIIVWAISGPVFGFSDTWQ 42 (132)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcchHH
Confidence 466667777778888887 588886663
Done!