BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004057
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 273 bits (697), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 185/297 (62%), Gaps = 4/297 (1%)
Query: 30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRD 89
Y T V LNVHLV H+HDDVGWLKTVDQY+ G N+IQ A V+ +LDSV+ +L +
Sbjct: 3 YKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLAN 62
Query: 90 PNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQ 149
P R+F++ E+AFF RWW Q+ Q+ VR+LV +LEF NGGW M+DEATTHY +IDQ
Sbjct: 63 PTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQ 122
Query: 150 TTLGHHYIKQHF--NKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRK 207
TLG ++++ F + P+ W IDPFGHS QA L ++GFD F R+DYQD+ RK
Sbjct: 123 MTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFA-QMGFDGFFFGRLDYQDKKVRK 181
Query: 208 EDKSLEVIWRGSKTFG-SSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVE 266
+ +E +WR S + ++ +FT+ P Y+PP G +++ PV ++ YN +
Sbjct: 182 KTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAK 241
Query: 267 QWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNA 323
+ V F+ A Q + R H + TMG DFQY+ A +WFK +DKLI VN R N
Sbjct: 242 ELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 218/800 (27%), Positives = 356/800 (44%), Gaps = 94/800 (11%)
Query: 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
D +KYN KL V +V HSH+D GW++T ++YY +++L + +
Sbjct: 41 DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 87
Query: 86 LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
L +P KF++AE+++F R++ + Q++ +V QLEFV GGW M DEA +H+ +
Sbjct: 88 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 147
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF ++ R Y + +
Sbjct: 148 VLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKE 206
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
+ + LE +WR + +FT+ P + Y P F F+ F
Sbjct: 207 LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLS 266
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQM-- 308
P + P + NV + +D +A + R N ++ +GDDF+++ W Q
Sbjct: 267 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVN 326
Query: 309 -DKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
++L ++N N A + T Y +A+ A +P + D+F YADR + YW+
Sbjct: 327 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 386
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
G++TSRP K RVL + A+ L L A L + QHHD +TG
Sbjct: 387 GYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 446
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
TAK H DY +R+ + S + P +FS L + +
Sbjct: 447 TAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIY---SPDFSFSYFTLDDSRWPG 503
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
+ I G++++ V +N L R ++ V+ + V D N + Q
Sbjct: 504 SGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 561
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
+ V S T+ Q S +Y ++F+ VPP+G TY + S A+
Sbjct: 562 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS 618
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
+ R+ L P++ ++ VG G ++FS G LK + ++ V
Sbjct: 619 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 676
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
P+ FL YG SGAY+F PNG A P + + V + + +G + V S ++
Sbjct: 677 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 735
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
Q I + A + I + D+ E++ R+ ++ + +FYTD NG F+KR R
Sbjct: 736 QT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIFYTDLNGLQFIKRRRL 789
Query: 751 YRADWSLQVNEPVAGNYYPV 770
+ P+ NYYP+
Sbjct: 790 DKL--------PLQANYYPI 801
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 218/800 (27%), Positives = 355/800 (44%), Gaps = 94/800 (11%)
Query: 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
D +KYN KL V +V HSH+D GW++T ++YY +++L + +
Sbjct: 71 DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 117
Query: 86 LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
L +P KF++AE+++F R++ + Q++ +V QLEFV GGW M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF ++ R Y + +
Sbjct: 178 VLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKE 236
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
+ + LE +WR + +FT+ P + Y P F F+ F
Sbjct: 237 LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLS 296
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQM-- 308
P + P + NV + +D +A + R N ++ +GDDF+++ W Q
Sbjct: 297 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVN 356
Query: 309 -DKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
++L ++N N A + T Y +A+ A +P + D+F YADR + YW+
Sbjct: 357 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 416
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
G++TSRP K RVL + A+ L L A L + QHHD +TG
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 476
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
TAK H DY +R+ + S P +FS L + +
Sbjct: 477 TAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPDFSFSYFTLDDSRWPG 533
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
+ I G++++ V +N L R ++ V+ + V D N + Q
Sbjct: 534 SGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 591
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
+ V S T+ Q S +Y ++F+ VPP+G TY + S A+
Sbjct: 592 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS 648
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
+ R+ L P++ ++ VG G ++FS G LK + ++ V
Sbjct: 649 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 706
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
P+ FL YG SGAY+F PNG A P + + V + + +G + V S ++
Sbjct: 707 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 765
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
Q I + A + I + D+ E++ R+ ++ + +FYTD NG F+KR R
Sbjct: 766 QT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIFYTDLNGLQFIKRRRL 819
Query: 751 YRADWSLQVNEPVAGNYYPV 770
+ P+ NYYP+
Sbjct: 820 DKL--------PLQANYYPI 831
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 218/800 (27%), Positives = 356/800 (44%), Gaps = 94/800 (11%)
Query: 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
D +KYN KL V +V HSH+D GW++T ++YY +++L + +
Sbjct: 71 DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 117
Query: 86 LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
L +P KF++AE+++F R++ + Q++ +V QLEFV GGW M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF ++ R Y + +
Sbjct: 178 VLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKE 236
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
+ + LE +WR + +FT+ P + Y P F F+ F
Sbjct: 237 LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLS 296
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQM-- 308
P + P + NV + +D +A + R N ++ +GDDF+++ W Q
Sbjct: 297 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVN 356
Query: 309 -DKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
++L ++N N A + T Y +A+ A +P + D+F YADR + YW+
Sbjct: 357 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 416
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
G++TSRP K RVL + A+ L L A L + QHHD +TG
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 476
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
TAK H DY +R+ + S + P +FS L + +
Sbjct: 477 TAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIY---SPDFSFSYFTLDDSRWPG 533
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
+ I G++++ V +N L R ++ V+ + V D N + Q
Sbjct: 534 SGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 591
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
+ V S T+ Q S +Y ++F+ VPP+G TY + S A+
Sbjct: 592 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS 648
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
+ R+ L P++ ++ VG G ++FS G LK + ++ V
Sbjct: 649 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 706
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
P+ FL YG SGAY+F PNG A P + + V + + +G + V S ++
Sbjct: 707 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 765
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
Q I + A + I + D+ E++ R+ ++ + +FYTD NG F+KR R
Sbjct: 766 QT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIFYTDLNGLQFIKRRRL 819
Query: 751 YRADWSLQVNEPVAGNYYPV 770
+ P+ NYYP+
Sbjct: 820 DKL--------PLQANYYPI 831
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 218/800 (27%), Positives = 355/800 (44%), Gaps = 94/800 (11%)
Query: 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
D +KYN KL V +V HSH+D GW++T ++YY +++L + +
Sbjct: 71 DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 117
Query: 86 LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
L +P KF++AE+++F R++ + Q++ +V QLEFV GGW M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF ++ R Y + +
Sbjct: 178 VLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKE 236
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
+ + LE +WR + +FT+ P + Y P F F+ F
Sbjct: 237 LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLS 296
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQM-- 308
P + P + NV + +D +A + R N ++ +GDDF+++ W Q
Sbjct: 297 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVN 356
Query: 309 -DKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
++L ++N N A + T Y +A+ A +P + D+F YADR + YW+
Sbjct: 357 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 416
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
G++TSRP K RVL + A+ L L A L + QHHD +TG
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 476
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
TAK H DY +R+ + S P +FS L + +
Sbjct: 477 TAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPDFSFSYFTLDDSRWPG 533
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
+ I G++++ V +N L R ++ V+ + V D N + Q
Sbjct: 534 SGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 591
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
+ V S T+ Q S +Y ++F+ VPP+G TY + S A+
Sbjct: 592 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS 648
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
+ R+ L P++ ++ VG G ++FS G LK + ++ V
Sbjct: 649 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 706
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
P+ FL YG SGAY+F PNG A P + + V + + +G + V S ++
Sbjct: 707 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 765
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
Q I + A + I + D+ E++ R+ ++ + +FYTD NG F+KR R
Sbjct: 766 QT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIFYTDLNGLQFIKRRRL 819
Query: 751 YRADWSLQVNEPVAGNYYPV 770
+ P+ NYYP+
Sbjct: 820 DKL--------PLQANYYPI 831
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 217/800 (27%), Positives = 355/800 (44%), Gaps = 94/800 (11%)
Query: 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
D +KYN KL V +V HSH+D GW++T ++YY +++L + +
Sbjct: 71 DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 117
Query: 86 LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
L +P KF++AE+++F R++ + Q++ +V QLEFV GGW M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF ++ R Y + +
Sbjct: 178 VLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKE 236
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
+ + LE +WR + +FT+ P + Y P F F+ F
Sbjct: 237 LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLS 296
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQM-- 308
P + P + NV + +D +A + R N ++ +GD+F+++ W Q
Sbjct: 297 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVN 356
Query: 309 -DKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
++L ++N N A + T Y +A+ A +P + D+F YADR + YW+
Sbjct: 357 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 416
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
G++TSRP K RVL + A+ L L A L + QHHD +TG
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 476
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
TAK H DY +R+ + S P +FS L + +
Sbjct: 477 TAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPDFSFSYFTLDDSRWPG 533
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
+ I G++++ V +N L R ++ V+ + V D N + Q
Sbjct: 534 SGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 591
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
+ V S T+ Q S +Y ++F+ VPP+G TY + S A+
Sbjct: 592 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS 648
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
+ R+ L P++ ++ VG G ++FS G LK + ++ V
Sbjct: 649 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 706
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
P+ FL YG SGAY+F PNG A P + + V + + +G + V S ++
Sbjct: 707 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 765
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
Q I + A + I + D+ E++ R+ ++ + +FYTD NG F+KR R
Sbjct: 766 QT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIFYTDLNGLQFIKRRRL 819
Query: 751 YRADWSLQVNEPVAGNYYPV 770
+ P+ NYYP+
Sbjct: 820 DKL--------PLQANYYPI 831
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 217/800 (27%), Positives = 354/800 (44%), Gaps = 94/800 (11%)
Query: 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
D +KYN KL V +V HSH+D GW++T ++YY +++L + +
Sbjct: 71 DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 117
Query: 86 LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
L +P KF++AE+++F R++ + Q++ +V QLEFV GGW M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
++ Q T G ++KQ N TP A W I PFGHS Y+L + GF ++ R Y + +
Sbjct: 178 VLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKE 236
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
+ + LE +WR + +FT+ P + Y P F F+ F
Sbjct: 237 LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLS 296
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQM-- 308
P + P + NV + +D +A + R N ++ +GDDF+++ W Q
Sbjct: 297 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVN 356
Query: 309 -DKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
++L ++N N A + T Y +A+ A +P + D+F YADR + YW+
Sbjct: 357 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 416
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
G++TSRP K RVL + A+ L L A L + QHHD +TG
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 476
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
TAK H DY +R+ + S P +FS L + +
Sbjct: 477 TAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPDFSFSYFTLDDSRWPG 533
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
+ I G++++ V +N L R ++ V+ + V D N + Q
Sbjct: 534 SGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 591
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
+ V S T+ Q S +Y ++F+ VPP+G TY + S A+
Sbjct: 592 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS 648
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
+ R+ L P++ ++ VG G ++FS G LK + ++ V
Sbjct: 649 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 706
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
P+ FL YG SGAY+F PNG A P + + V + + +G + V S ++
Sbjct: 707 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 765
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
Q I + A + I + D+ E++ R+ ++ + +FYTD NG F+KR R
Sbjct: 766 QT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIFYTDLNGLQFIKRRRL 819
Query: 751 YRADWSLQVNEPVAGNYYPV 770
+ P+ NYYP+
Sbjct: 820 DKL--------PLQANYYPI 831
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 219/800 (27%), Positives = 353/800 (44%), Gaps = 94/800 (11%)
Query: 26 DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
D +KYN KL V +V HSH+D GW++T ++YY +++L + +
Sbjct: 41 DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 87
Query: 86 LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
L +P KF++AE+++F R++ + Q + +V QLEFV GGW DEA +H+ +
Sbjct: 88 LHDNPEXKFIWAEISYFARFYHDLGENKKLQXKSIVKNGQLEFVTGGWVXPDEANSHWRN 147
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
++ Q T G ++KQ N TP A W IDPFGHS Y+L + GF ++ R Y + +
Sbjct: 148 VLLQLTEGQTWLKQFXNVTPTASWAIDPFGHSPTXPYILQ-KSGFKNMLIQRTHYSVKKE 206
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
+ + LE +WR + +FT+ P + Y P F F+ F
Sbjct: 207 LAQQRQLEFLWRQIWDNKGDTALFTHXXPFYSYDIPHTCGPDPKVCCQFDFKRXGSFGLS 266
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQM-- 308
P + P + NV + +D +A + R N ++ +GDDF+++ W Q
Sbjct: 267 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVN 326
Query: 309 -DKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
++L ++N N A + T Y +A+ A +P + D+F YADR + YW+
Sbjct: 327 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 386
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
G++TSRP K RVL + A+ L L A L + QHHD +TG
Sbjct: 387 GYYTSRPYHKRXDRVLXHYVRAAEXLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 446
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
TAK H DY +R + S P +FS L + +
Sbjct: 447 TAKTHVVVDYEQRXQEALKACQXVXQQSVYRLLTKPS---IYSPDFSFSYFTLDDSRWPG 503
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
+ I G++++ V +N L R ++ V+ + V D N + Q
Sbjct: 504 SGVEDSRTTIILGEDILPSKHVVXHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 561
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
+ V S T+ Q S +Y ++F+ VPP G TY + S A+
Sbjct: 562 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPXGLATYVLTISDSKPEHTSYAS 618
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
+ R+ L P++ ++ VG G ++FS G LK + ++ V
Sbjct: 619 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 676
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
P+ FL YG SGAY+F PNG A P + + V + + +G + V S ++
Sbjct: 677 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 735
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
Q I + A + I + D+ E++ R+ ++ + +FYTD NG F+KR R
Sbjct: 736 QT----IXRGGAPEIRNLVDIGSLDNT--EIVXRLETHIDSGDIFYTDLNGLQFIKRRRL 789
Query: 751 YRADWSLQVNEPVAGNYYPV 770
+ P+ NYYP+
Sbjct: 790 DKL--------PLQANYYPI 801
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 106/167 (63%), Gaps = 4/167 (2%)
Query: 608 LKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWY----GSMVDTQSSGAYIFRPNGAQPNV 663
L+ F TG L + N + +P++Q+F WY G+ + +Q+SGAYIFRPN +P
Sbjct: 10 LRARFDPNTGLLMELENLEQNLLLPVRQAFYWYNASTGNNLSSQASGAYIFRPNQNKPLF 69
Query: 664 VSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVIS 723
VS +++ +V EVHQ F++W QV RLY + H E+E+T+GPIP D GKEVIS
Sbjct: 70 VSHWAQTHLVKASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVIS 129
Query: 724 RMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPV 770
R + T +FYTDSNGR+ L+R R+YR W L EPVAGNYYPV
Sbjct: 130 RFDTALATRGLFYTDSNGREILERRRNYRPTWKLNQTEPVAGNYYPV 176
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 47/73 (64%)
Query: 320 RVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSG 379
RVN LYSTP+ Y N AN W +K DD+FPYAD +WTG+F+SRPALK Y R+
Sbjct: 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 380 FYLASRQLEFLAG 392
F QLE LAG
Sbjct: 62 FLQVCNQLEALAG 74
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 400 TSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQC 459
++ L +A+ + QHHDAV+GT++QH NDYA++L+ G K
Sbjct: 3 SAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKED--- 59
Query: 460 TKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKD 519
F+ C LNIS CP T+ + V YNPLG ++R+PV+ +VKD
Sbjct: 60 ------FAFCRKLNISICPLTQT----AERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKD 109
Query: 520 PLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISR 578
P G + V + + S LLF VP +G++ Y +S+
Sbjct: 110 PGGKIVPSDVVTIPSSDSQ--------------------ELLFSALVPAVGFSIYSVSQ 148
>pdb|2WYH|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYH|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYI|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
pdb|2WYI|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
Length = 923
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 20/192 (10%)
Query: 35 GVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPN-RK 93
G VH+++HSH D W +Q+++ + N++D ++E + DP+
Sbjct: 20 GPAMATKKVHIISHSHWDREWYMAYEQHHMR---------LINLIDDLLEVFQTDPDFHS 70
Query: 94 FVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLG 153
F ++ PE + ++R+ + + +L + + + D+ T + +G
Sbjct: 71 FHLDGQTIILDDYLKVRPEREPEIRQAIASGKLR-IGPFYILQDDFLTSSESNVRNMLIG 129
Query: 154 HHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFAR-------IDYQDRAKR 206
+ P G+ D FG+ Q L ++ G + F R + D +++
Sbjct: 130 KEDCDRWGASVP-LGYFPDTFGNMG-QTPQLMLKAGLQAAAFGRGIRPTGFNNQVDTSEK 187
Query: 207 KEDKSLEVIWRG 218
+ E+ W+G
Sbjct: 188 YSSQFSEISWQG 199
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 93 KFVFAEMAFFHRWWVGQSP---EIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMI 147
K F E A+F W G+ P E++E RK+ D +L G H HY+D++
Sbjct: 39 KSTFEETAYF--LWYGKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDVL 94
>pdb|3IMM|A Chain A, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
pdb|3IMM|B Chain B, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
pdb|3IMM|C Chain C, Crystal Structure Of Putative Glycosyl Hydrolase
(Yp_001301887.1) From Parabacteroides Distasonis Atcc
8503 At 2.00 A Resolution
Length = 201
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 487 GKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGN 523
GKNL A YNP W+ TD + V D ++ KD N
Sbjct: 12 GKNLENANYNPEVWSETDGVLGAVKDESIWTKDEYEN 48
>pdb|3FCH|A Chain A, The Structure Of A Previously Undetected Carboxysome Shell
Protein: Csos1d From Prochlorococcus Marinus Med4
Length = 281
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 636 SFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVP----IKIIRGPMVDEVHQQFNSWIYQ 691
S L GS V +QS+GA F ++ ++VSR I++ +D + Q +++
Sbjct: 41 SSLVTGSEVQSQSNGASCFITTDSEKSLVSRQASQVEQIELRTYVFLDSLQPQLAAYMGT 100
Query: 692 VTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTE 732
V+R ++ PIP + + EV M + VT+
Sbjct: 101 VSRGFL------------PIPGDSCLWMEVSPGMAVHRVTD 129
>pdb|3FCH|B Chain B, The Structure Of A Previously Undetected Carboxysome Shell
Protein: Csos1d From Prochlorococcus Marinus Med4
Length = 281
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 636 SFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVP----IKIIRGPMVDEVHQQFNSWIYQ 691
S L GS V +QS+GA F ++ ++VSR I++ +D + Q +++
Sbjct: 41 SSLVTGSEVQSQSNGASCFITTDSEKSLVSRQASQVEQIELRTYVFLDSLQPQLAAYMGT 100
Query: 692 VTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTE 732
V+R ++ PIP + + EV M + VT+
Sbjct: 101 VSRGFL------------PIPGDSCLWMEVSPGMAVHRVTD 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,087,487
Number of Sequences: 62578
Number of extensions: 1039685
Number of successful extensions: 2470
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2397
Number of HSP's gapped (non-prelim): 28
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)