Query 004057
Match_columns 776
No_of_seqs 203 out of 1224
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 3E-166 7E-171 1358.7 62.1 724 30-776 26-761 (996)
2 PLN02701 alpha-mannosidase 100.0 3E-143 6E-148 1280.1 77.8 712 27-776 27-814 (1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 5E-130 1E-134 1075.5 50.4 715 27-776 149-920 (1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 2E-102 4E-107 937.0 68.0 635 40-774 3-670 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 1E-79 2.3E-84 652.4 41.1 573 38-758 278-884 (1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 3E-60 6.6E-65 502.2 22.4 273 42-353 1-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 2E-48 4.4E-53 461.5 19.2 533 41-761 198-747 (943)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 3.5E-28 7.5E-33 276.9 28.4 236 490-776 1-265 (457)
9 COG0383 AMS1 Alpha-mannosidase 99.9 9E-26 2E-30 268.7 3.6 357 39-434 2-389 (943)
10 PF09261 Alpha-mann_mid: Alpha 99.8 5.5E-22 1.2E-26 167.8 3.1 75 358-432 1-80 (80)
11 smart00872 Alpha-mann_mid Alph 99.8 1.1E-20 2.5E-25 159.3 6.8 74 359-432 1-79 (79)
12 PF03065 Glyco_hydro_57: Glyco 98.7 3.5E-08 7.6E-13 108.6 10.6 122 75-198 28-196 (360)
13 COG1543 Uncharacterized conser 97.3 0.00053 1.1E-08 74.4 8.0 92 103-196 115-207 (504)
14 PF01522 Polysacc_deac_1: Poly 96.5 0.021 4.5E-07 52.2 10.3 103 77-192 18-122 (123)
15 COG1449 Alpha-amylase/alpha-ma 95.8 0.37 8.1E-06 56.5 17.8 97 94-192 162-262 (615)
16 TIGR03212 uraD_N-term-dom puta 95.4 1.6 3.4E-05 46.6 19.5 111 75-199 75-187 (297)
17 TIGR02764 spore_ybaN_pdaB poly 94.6 0.31 6.8E-06 48.4 11.0 101 80-193 22-124 (191)
18 TIGR02884 spore_pdaA delta-lac 94.1 0.38 8.3E-06 49.2 10.5 101 80-193 53-156 (224)
19 TIGR03006 pepcterm_polyde poly 93.7 0.6 1.3E-05 49.0 11.2 111 74-196 25-139 (265)
20 TIGR02873 spore_ylxY probable 92.2 1.3 2.8E-05 46.6 11.3 102 78-192 99-202 (268)
21 PRK14582 pgaB outer membrane N 89.2 15 0.00033 43.6 17.4 80 115-197 168-275 (671)
22 PRK14581 hmsF outer membrane N 86.6 4 8.7E-05 48.3 10.5 82 114-198 167-276 (672)
23 PF07481 DUF1521: Domain of Un 81.7 15 0.00032 34.8 9.8 96 598-705 7-103 (171)
24 PRK15394 4-deoxy-4-formamido-L 80.5 86 0.0019 33.5 16.8 80 115-198 92-175 (296)
25 PF08672 APC2: Anaphase promot 53.2 15 0.00033 29.0 3.0 22 112-133 37-58 (60)
26 TIGR03593 yidC_nterm membrane 49.7 1.7E+02 0.0037 32.1 11.9 28 599-626 74-101 (366)
27 PF14849 YidC_periplas: YidC p 48.2 1E+02 0.0022 32.2 9.4 25 601-625 2-26 (270)
28 COG0726 CDA1 Predicted xylanas 42.7 2E+02 0.0043 29.3 10.5 115 53-191 65-181 (267)
29 TIGR03826 YvyF flagellar opero 39.9 44 0.00095 31.2 4.3 52 74-132 27-78 (137)
30 PF02929 Bgal_small_N: Beta ga 39.0 3.7E+02 0.0079 28.3 11.8 105 603-711 2-121 (276)
31 PF12395 DUF3658: Protein of u 35.8 62 0.0014 29.0 4.6 68 42-136 40-107 (111)
32 PRK10148 hypothetical protein; 30.4 19 0.0004 34.1 0.3 18 165-182 123-140 (147)
33 cd06811 PLPDE_III_yhfX_like Ty 29.8 1.7E+02 0.0036 32.5 7.8 85 104-201 4-89 (382)
34 PF06044 DRP: Dam-replacing fa 28.3 83 0.0018 32.2 4.4 57 76-132 186-249 (254)
35 PHA03393 odv-e66 occlusion-der 27.8 1.1E+02 0.0023 36.4 5.8 111 54-185 54-175 (682)
36 PF03755 YicC_N: YicC-like fam 24.5 1.6E+02 0.0036 28.1 5.7 60 105-164 40-101 (159)
37 PF10102 DUF2341: Domain of un 24.4 3.7E+02 0.0079 23.1 7.1 49 513-581 4-53 (89)
38 PRK01318 membrane protein inse 23.1 7.9E+02 0.017 28.6 11.7 27 600-626 40-66 (521)
39 PRK05097 Ter macrodomain organ 20.9 2.4E+02 0.0053 26.1 5.5 102 53-163 11-113 (150)
40 PF06045 Rhamnogal_lyase: Rham 20.8 4.3E+02 0.0094 26.5 7.8 26 598-623 15-40 (203)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-166 Score=1358.71 Aligned_cols=724 Identities=51% Similarity=0.870 Sum_probs=668.4
Q ss_pred ecCCCCccCCeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhc
Q 004057 30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQ 109 (776)
Q Consensus 30 ~~~~~~~~~~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~ 109 (776)
|++|+...+.+++||||||||+|+||++|+|+||.|+++.||++.|++|||+|+++|.++|+|||+++|++||.+||.++
T Consensus 26 y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~q 105 (996)
T KOG1959|consen 26 YNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQ 105 (996)
T ss_pred cCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcC--CCCcceeecCCCCCChhhHHHHHhh
Q 004057 110 SPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFN--KTPKAGWQIDPFGHSAVQAYLLGVE 187 (776)
Q Consensus 110 ~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG--~~~~~~w~~D~FG~s~~~p~il~~~ 187 (776)
++++++.||+||++|||||+||||+|+|||.+||.++|+|++.||+||.++|| .+|++||||||||||+.+|.||+ +
T Consensus 106 S~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfA-q 184 (996)
T KOG1959|consen 106 SETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFA-Q 184 (996)
T ss_pred CHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999999999999 79999999999999999999996 9
Q ss_pred cCCcEEEEeecchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCCCCCCCCccccHHH
Q 004057 188 LGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQ 267 (776)
Q Consensus 188 ~G~~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 267 (776)
|||++.+|+|+++++|+.|..++.+||+|+|++++++.++|||++|++||++|.+|||+..|.+.|++|+|.+.++|+++
T Consensus 185 mGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~NVke 264 (996)
T KOG1959|consen 185 MGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYNVKE 264 (996)
T ss_pred hCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCeeEEeccCCccCCchhhHHHHHHHHHHHHhcC---C-ceeEEEcChHHHHHHHHhCCCCCC
Q 004057 268 WVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG---G-RVNALYSTPSLYTEAKNAANGPWP 343 (776)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~il~~~G~Df~~~~a~~~~~~~~~li~~~n~~---~-~~~i~~sT~~~yf~~~~~~~~~~p 343 (776)
+++.|++..+.++..|+|||+|+|||+||+|.+|..||+|||+||+++|+. + .+++.||||++|++++++.+..||
T Consensus 265 rVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp 344 (996)
T KOG1959|consen 265 RVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWP 344 (996)
T ss_pred HHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999999999999943 4 899999999999999999999999
Q ss_pred CccCCcccccccCCCcccceeecchhhHHHHHHHHHHHHHHHHHHHhhCCCC--CCCchHHHHHHHHhhccccCCCCCCc
Q 004057 344 LKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKS--PGPTTSALGDALGIAQHHDAVTGTAK 421 (776)
Q Consensus 344 ~~~gD~~py~~~~~~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~~~~~--~~~~~~~~w~~l~~~qhHD~ItGts~ 421 (776)
+++.|||||+++++.||||||||||.+|++.|++...|++|++|++++++.. ..+.++.++++|++.|||||||||++
T Consensus 345 ~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTek 424 (996)
T KOG1959|consen 345 VKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTEK 424 (996)
T ss_pred ccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccch
Confidence 9999999999999999999999999999999999999999999999987654 56789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCccccccCCCCCCCCCCCCceEEEEEcCCCce
Q 004057 422 QHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWN 501 (776)
Q Consensus 422 ~~V~~d~~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~ 501 (776)
++|.+||+++|..++-.++.+++.+++.|.... +..|++|++||+|+||.++. ..+...|++||||+|.
T Consensus 425 q~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~~ 493 (996)
T KOG1959|consen 425 QHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAHT 493 (996)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcce
Confidence 999999999999999999999999999998754 34789999999999999863 3578899999999999
Q ss_pred eeEEEEEEEcCCcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCCCeEEEEEEEeeCCCceEEEEEEecCC
Q 004057 502 RTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAG 581 (776)
Q Consensus 502 r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~ 581 (776)
++++|+|||..++++|.|+.|++|++|++|.......+. .......++|+|.|.|||+|+++|.|+....
T Consensus 494 ~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~eLvf~asvpplg~aty~i~k~~~ 563 (996)
T KOG1959|consen 494 VTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHELVFKASVPPLGIATYFIKKVAS 563 (996)
T ss_pred eeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCceEEEEEEecCccceEEEEeecCc
Confidence 999999999999999999999999999999864432221 1223456899999999999999999996543
Q ss_pred ccccccccccccCCCCCCceEecCCeEEEEEECCCCceEEEEecCCceEEeeeeeEEEEeecc---CCCCccceeEecCC
Q 004057 582 KVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMV---DTQSSGAYIFRPNG 658 (776)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~leN~~~~v~~~~~~G~i~sl~dk~~g~~~~~~~~~~~Y~~~~---~~~~~gaY~f~p~~ 658 (776)
......+..............|+|+++++.||..+|.++++....+|++..+.|.|.+|.+.. +.+.||||+|+| +
T Consensus 564 ~~~~~~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n~~q~SgAYiFRp-~ 642 (996)
T KOG1959|consen 564 TERGSASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFGYYKGYRGDNDKQASGAYIFRP-G 642 (996)
T ss_pred ccccccccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeEEEEeecCCcCCccCcceEecC-C
Confidence 222111111111122334488999999999998889999999888999999999999999765 246799999999 4
Q ss_pred CcceecC-CCccEEEEecCcEEEEEEEecceEEEEEEEecCCCceEEEEEEccccccCCCCcEEEEEEeeeccCCceEEE
Q 004057 659 AQPNVVS-RSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYT 737 (776)
Q Consensus 659 ~~~~~~~-~~~~i~i~~Gpl~~~i~~~~~~~i~q~irLy~~~~~ie~~~~V~~~~~~~~~~~el~~~f~t~i~s~~~~yt 737 (776)
...+++. ....++|..|||+.+|++.++.+++|.+|+|+|.+++|||+.|+++|++++.++|++.||+|+|.+++.|||
T Consensus 643 ~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYT 722 (996)
T KOG1959|consen 643 QADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFYT 722 (996)
T ss_pred CCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEEe
Confidence 4344443 346788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeeccccccCcccccccccccccccccccccC
Q 004057 738 DSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI 776 (776)
Q Consensus 738 DsnG~~~ikR~~~~~~~w~~~~~~pi~~NyYPv~s~~~i 776 (776)
||||+||+||.+++|++|....++||+|||||||+.|||
T Consensus 723 DSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~l 761 (996)
T KOG1959|consen 723 DSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYL 761 (996)
T ss_pred cCcHHHHHHHHhcccCCCccccCccccccccccceeeEE
Confidence 999999999999999999999999999999999999986
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=2.8e-143 Score=1280.08 Aligned_cols=712 Identities=31% Similarity=0.560 Sum_probs=611.7
Q ss_pred eeeecCCCCccCCeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHH
Q 004057 27 YVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWW 106 (776)
Q Consensus 27 ~~~~~~~~~~~~~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~ 106 (776)
.|+|+..++. +++++||+|||||||+|||||+++||. +.++.||++||+.|++||++||+|+|++||++||
T Consensus 27 ~~~y~~~~~~-~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~Ww 97 (1050)
T PLN02701 27 RVKYRGDEWD-REKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLERWW 97 (1050)
T ss_pred ceeecccccC-CcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHHHHH
Confidence 4668777664 678999999999999999999999987 6899999999999999999999999999999999
Q ss_pred hhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHh
Q 004057 107 VGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGV 186 (776)
Q Consensus 107 ~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~ 186 (776)
++++|+++++||+||++||||||||||||+|||++++|++||||++||+|++++||+.|++||+|||||||++|||||+
T Consensus 98 ~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~Ll~- 176 (1050)
T PLN02701 98 RDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYLLR- 176 (1050)
T ss_pred HhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCcEEEEeecchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCC-CC------CCCCCCC--cccCC------CC
Q 004057 187 ELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPV-HY------SPPSGFH--FELTD------DF 251 (776)
Q Consensus 187 ~~G~~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~-~Y------~~~~~~~--~~~~~------~~ 251 (776)
+|||++++|+|++++++..+..++.+||+|+++++.+.|++||||+||. +| ++|++|| ||..+ ..
T Consensus 177 ~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~~ 256 (1050)
T PLN02701 177 RMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYEL 256 (1050)
T ss_pred hCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCccccccccccccccccccc
Confidence 9999999999999999999999999999999865545599999999994 44 3455666 54432 23
Q ss_pred CCCCCCC-CCccccHHHHHHHHHHHHHHhcccCCCCeeEEeccCCccCC---chhhHHHHHHHHHHHHhcCC--ceeEEE
Q 004057 252 DPVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQ---YAESWFKQMDKLIHYVNKGG--RVNALY 325 (776)
Q Consensus 252 ~~~~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~~~---~a~~~~~~~~~li~~~n~~~--~~~i~~ 325 (776)
|||.++| .++++|++++++.|++++++++..|+++++|+|+||||+|. ++..+|++++++++++|+++ .++++|
T Consensus 257 cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~i~~ 336 (1050)
T PLN02701 257 CPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAEVKF 336 (1050)
T ss_pred CcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCceEEE
Confidence 6776664 57888999999999999999988899999999999999994 67889999999999999874 489999
Q ss_pred cChHHHHHHHHhCC----------------CCCCCccCCcccccccCCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q 004057 326 STPSLYTEAKNAAN----------------GPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEF 389 (776)
Q Consensus 326 sT~~~yf~~~~~~~----------------~~~p~~~gD~~py~~~~~~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~ 389 (776)
||+++||+++++.. ..||+++||||||+++.++||||||||||.+|+++|.+|++|++||+|++
T Consensus 337 ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~L~s 416 (1050)
T PLN02701 337 GTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFS 416 (1050)
T ss_pred CCHHHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998753 47999999999999999999999999999999999999999999999999
Q ss_pred hh--------CCCCC---CCchHHHHHHHHhhccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 004057 390 LA--------GKKSP---GPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQ 458 (776)
Q Consensus 390 l~--------~~~~~---~~~~~~~w~~l~~~qhHD~ItGts~~~V~~d~~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~ 458 (776)
++ +..++ ...++.+||+|+++||||+||||++++|++||..||.++++.++.+++.+++.|+..... .
T Consensus 417 la~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~~-~ 495 (1050)
T PLN02701 417 FLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRHE-K 495 (1050)
T ss_pred HHhhhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c
Confidence 84 23344 356789999999999999999999999999999999999999999999999999875321 1
Q ss_pred CCCCCCCccccC-ccccccCCCCCC-CCCCCCceEEEEEcCCCceeeEEEEEEEcCCcEEEEcCCCCEEeEEEEeccccc
Q 004057 459 CTKPASTFSQCP-LLNISYCPPTEK-GIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVT 536 (776)
Q Consensus 459 ~~~~~~~~~~~~-~ln~s~~~~~~~-~~~~~~~~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~ 536 (776)
+..+...|+.|. .+|++.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|.+|++|++|+++.+...
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~~~~ 575 (1050)
T PLN02701 496 SDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEWQHD 575 (1050)
T ss_pred cccccccccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEecccccc
Confidence 222334577784 458999987742 233456689999999999999999999999999999999999999999875421
Q ss_pred cccccchhhhccCCCCCCCCeEEEEEEEeeCCCceEEEEEEecCCccc---c-ccc------cc-----cccCCCCCCce
Q 004057 537 SNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVK---R-RKG------FF-----LAADSPQDKTV 601 (776)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~---~-~~~------~~-----~~~~~~~~~~~ 601 (776)
. .......++|.|.|+||||||++|.|........ + .+. .+ ........+.+
T Consensus 576 ~-------------~~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1050)
T PLN02701 576 G-------------EKLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGDTV 642 (1050)
T ss_pred c-------------cccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccCCCcE
Confidence 1 0012356899999999999999999987532111 0 000 00 00001123458
Q ss_pred EecCCeEEEEEECCCCceEEEEecCCceEEeeeeeEEEEeeccCCCCccceeEecCCCc-ceecCCCccEEEEecCcEEE
Q 004057 602 EVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSRSVPIKIIRGPMVDE 680 (776)
Q Consensus 602 ~leN~~~~v~~~~~~G~i~sl~dk~~g~~~~~~~~~~~Y~~~~~~~~~gaY~f~p~~~~-~~~~~~~~~i~i~~Gpl~~~ 680 (776)
.|||++++|+||+.||.|++|+++.+|++..+.++|.+|.+ ..||||+|+|++.. +.. .....+.|++||++++
T Consensus 643 ~ieN~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s----~~SGAYiFrP~~~~~p~~-~~~~~~~v~~Gplv~e 717 (1050)
T PLN02701 643 EISNSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSS----QGSGAYLFKPDGEAQPIV-QAGGLVVVSEGPLVQE 717 (1050)
T ss_pred EEecCeEEEEEcCCCCceeEEEecccCceecceeeeeeecC----CCCcceEEcCCCCCcccC-CCCceEEEEeCCEEEE
Confidence 99999999999989999999999999999999999999973 57899999998763 322 2223456899999999
Q ss_pred EEEEe-----cceEEEEEEEecC-----CCceEEEEEEccccccCCCCcEEEEEEeeeccCCceEEEccCCCceeeeccc
Q 004057 681 VHQQF-----NSWIYQVTRLYID-----KEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750 (776)
Q Consensus 681 i~~~~-----~~~i~q~irLy~~-----~~~ie~~~~V~~~~~~~~~~~el~~~f~t~i~s~~~~ytDsnG~~~ikR~~~ 750 (776)
|++.+ +++++|++|||++ ...+|++++||++|. |..|+|++|||.|+|+|+++||||+|||||+||+
T Consensus 718 V~~~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~qm~kR~-- 794 (1050)
T PLN02701 718 VHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRE-- 794 (1050)
T ss_pred EEEEeecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccceeeeec--
Confidence 99976 4679999999998 678999999999986 6789999999999999999999999999999997
Q ss_pred cccCcccccccccccccccccccccC
Q 004057 751 YRADWSLQVNEPVAGNYYPVIFFLLI 776 (776)
Q Consensus 751 ~~~~w~~~~~~pi~~NyYPv~s~~~i 776 (776)
+|+ ++|++||||||+++|||
T Consensus 795 ---~~~---~~Pv~gNYYPv~s~a~I 814 (1050)
T PLN02701 795 ---TYD---KIPLQGNYYPMPSLAFL 814 (1050)
T ss_pred ---ccc---cCccccccccccceEEE
Confidence 343 79999999999999997
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-130 Score=1075.47 Aligned_cols=715 Identities=31% Similarity=0.537 Sum_probs=602.0
Q ss_pred eeeecCCCCccCCeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHH
Q 004057 27 YVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWW 106 (776)
Q Consensus 27 ~~~~~~~~~~~~~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~ 106 (776)
.|.|+...+....+++|++|||||.|+||++||++||+ .+.++||++++..|.++|++||+|+|++||.+||
T Consensus 149 ~i~yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww 220 (1129)
T KOG1958|consen 149 KITYDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLERWW 220 (1129)
T ss_pred eeecChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHHHhh
Confidence 35688777776777999999999999999999999998 7899999999999999999999999999999999
Q ss_pred hhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHh
Q 004057 107 VGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGV 186 (776)
Q Consensus 107 ~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~ 186 (776)
..++|..++++|+||++||||||+|||||||||.+|+.++|+|+.+||+||..++|+.|+++|.+||||||++||+||+
T Consensus 221 ~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL~- 299 (1129)
T KOG1958|consen 221 DDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLLR- 299 (1129)
T ss_pred hhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCcEEEEeecchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCC-CCCCCC----------CCCcccCC---CCC
Q 004057 187 ELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPV-HYSPPS----------GFHFELTD---DFD 252 (776)
Q Consensus 187 ~~G~~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~-~Y~~~~----------~~~~~~~~---~~~ 252 (776)
.+|+++++++|+||..|..++..+.+||+||..++..+.+.||||+||+ +|+.|+ +|+|.+.. .+|
T Consensus 300 ~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~C 379 (1129)
T KOG1958|consen 300 RAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCEC 379 (1129)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCcCC
Confidence 9999999999999999999999999999999998877788999999997 588763 68887653 357
Q ss_pred CCCCCC-CCccccHHHHHHHHHHHHHHhcccCCCCeeEEeccCCccCCchhhH---HHHHHHHHHHHhcCC--ceeEEEc
Q 004057 253 PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESW---FKQMDKLIHYVNKGG--RVNALYS 326 (776)
Q Consensus 253 ~~~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~~~~a~~~---~~~~~~li~~~n~~~--~~~i~~s 326 (776)
||...| .|++.||++|++.+++|+++++..|++|.+|+|.||||+|....+| |.|+.+|++++|+.+ .++++|+
T Consensus 380 pw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aqFG 459 (1129)
T KOG1958|consen 380 PWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQFG 459 (1129)
T ss_pred CCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceeeecC
Confidence 885555 6899999999999999999999999999999999999999987665 999999999999874 6889999
Q ss_pred ChHHHHHHHHhC----C---CCCCCccCCcccccccCCCcccceeecchhhHHHHHHHHHHHHHHHHHHHhh-------C
Q 004057 327 TPSLYTEAKNAA----N---GPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA-------G 392 (776)
Q Consensus 327 T~~~yf~~~~~~----~---~~~p~~~gD~~py~~~~~~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~-------~ 392 (776)
|++|||+++++. + ..+|+++||||+|+|+..+||+|||||||.+|++.|.+|+.||+||.|.+|+ +
T Consensus 460 TlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~r~~ 539 (1129)
T KOG1958|consen 460 TLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAHRVG 539 (1129)
T ss_pred CHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 999999999875 1 3579999999999999999999999999999999999999999999999863 1
Q ss_pred C--CCCC---CchHHHHHHHHhhccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCc-
Q 004057 393 K--KSPG---PTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTF- 466 (776)
Q Consensus 393 ~--~~~~---~~~~~~w~~l~~~qhHD~ItGts~~~V~~d~~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~- 466 (776)
. ..+. ..+.+|+|+|+++||||+||||+++.|+.||.+||..+...++.++.+++..|+..........++-.+
T Consensus 540 ~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~~~~ 619 (1129)
T KOG1958|consen 540 LAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSHSFI 619 (1129)
T ss_pred hhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCce
Confidence 1 1222 357889999999999999999999999999999999999999999999999999865422222222112
Q ss_pred cccCcc-ccccCCCC-CCCCCCCCceEEEEEcCCCceeeEEEEEEEcCCcEEEEcCCCCEEeEEEEeccccccccccchh
Q 004057 467 SQCPLL-NISYCPPT-EKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYT 544 (776)
Q Consensus 467 ~~~~~l-n~s~~~~~-~~~~~~~~~~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~ 544 (776)
++-... +.+.-|.. -..+ .+.+..|++||||.++|.++|.|.|+.+.+.|.+..|.+|++||.|++..+.+.
T Consensus 620 emd~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk----- 693 (1129)
T KOG1958|consen 620 EMDDIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK----- 693 (1129)
T ss_pred ehhhcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc-----
Confidence 111110 11111220 1122 234578999999999999999999999999999999999999999998632210
Q ss_pred hhccCCCCCCCCeEEEEEEEeeCCCceEEEEEEecCC-ccccccc---ccc-----cc--CCCCCCceEecCCeEEEEEE
Q 004057 545 EAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAG-KVKRRKG---FFL-----AA--DSPQDKTVEVGPGNLKMSFS 613 (776)
Q Consensus 545 ~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~-~~~~~~~---~~~-----~~--~~~~~~~~~leN~~~~v~~~ 613 (776)
....+.|+|+|.++|||||..+|++..+.. ......+ +++ .. .....+...++|++..|.|+
T Consensus 694 -------~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l~fd 766 (1129)
T KOG1958|consen 694 -------TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFELRFD 766 (1129)
T ss_pred -------eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeEEec
Confidence 012347999999999999999999987632 1111110 110 00 01111235899999999999
Q ss_pred CCCCceEEEEecCCceEEeeeeeEEEEeeccCCCCccceeEecCCC-cceecCCCccEEEEecCcEEEEEEEecc---eE
Q 004057 614 RTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGA-QPNVVSRSVPIKIIRGPMVDEVHQQFNS---WI 689 (776)
Q Consensus 614 ~~~G~i~sl~dk~~g~~~~~~~~~~~Y~~~~~~~~~gaY~f~p~~~-~~~~~~~~~~i~i~~Gpl~~~i~~~~~~---~i 689 (776)
+++|.|.++..+.++....+...|.-|.....++.+|||.|.|+++ ++........|.+ +|||+++|....++ ..
T Consensus 767 ~~~G~i~~~~~~~D~~~~~~q~~f~~y~~~~~~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~~~~v~~~~ 845 (1129)
T KOG1958|consen 767 PETGTIKSINSLSDNKHFESQVSFSNYGERISGDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQFLKNVLHRL 845 (1129)
T ss_pred cccchhhhhhhcccCCCcccceeeccccccccCCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccccchHHHhc
Confidence 9999999998888888888777787777544578899999999998 5544444556777 99999999987643 23
Q ss_pred EEEEEEecCCCceEEEEEEccccccCCCCcEEEEEEeeeccCCceEEEccCCCceeeeccccccCccccccccccccccc
Q 004057 690 YQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYP 769 (776)
Q Consensus 690 ~q~irLy~~~~~ie~~~~V~~~~~~~~~~~el~~~f~t~i~s~~~~ytDsnG~~~ikR~~~~~~~w~~~~~~pi~~NyYP 769 (776)
.|.+|+|.|. .+|+...||- .+..|.|+.|||.|++++...||||+||+||+||.+. .+.|+++||||
T Consensus 846 ~~~~~~~~G~-~vei~~~vdi---~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~KlPlQaNyYP 913 (1129)
T KOG1958|consen 846 SQNVRGYSGE-EVEISNSVDI---RKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKLPLQANYYP 913 (1129)
T ss_pred hhheeccCCc-ceeeeceeec---ccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccCcccceeec
Confidence 3789999987 6888887753 3567999999999999999999999999999999865 68999999999
Q ss_pred ccccccC
Q 004057 770 VIFFLLI 776 (776)
Q Consensus 770 v~s~~~i 776 (776)
|++++||
T Consensus 914 mpt~a~I 920 (1129)
T KOG1958|consen 914 MPTAAFI 920 (1129)
T ss_pred ccceeee
Confidence 9999997
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=2e-102 Score=936.98 Aligned_cols=635 Identities=14% Similarity=0.228 Sum_probs=513.7
Q ss_pred eeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEE-EehhHHHHHHHhhcChHHHHHHH
Q 004057 40 KLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFV-FAEMAFFHRWWVGQSPEIQEQVR 118 (776)
Q Consensus 40 ~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~-~~e~~~~~~w~~~~~p~~~~~vk 118 (776)
+++||+|||||||+|||||++++.. ++.++|++++++|+++|+++|. +++|..+.+||.+.+|+++++||
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~~---------~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~~~~ik 73 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSRI---------LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPEDKERVK 73 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhHH---------HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHHHHHHH
Confidence 5789999999999999999999985 7889999999999999999975 44444445666688999999999
Q ss_pred HHHHcCcEEEEccee-eeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhhcCCcEEEEee
Q 004057 119 KLVDASQLEFVNGGW-CMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFAR 197 (776)
Q Consensus 119 ~lv~~Grle~v~G~w-v~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~~G~~~~v~~R 197 (776)
+||++||| ++||| ||+|++++||||+||||++|++|+ ++||..|++||+||+||||++|||||+ ++||+++++||
T Consensus 74 ~lV~~Grl--~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl~-~~Gi~~~~~wr 149 (875)
T PRK09819 74 KLVQAGKL--IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIYN-GFGITRTLFWR 149 (875)
T ss_pred HHHHcCCE--eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHHH-hCCCCeEEEEe
Confidence 99999999 34888 999999999999999999999997 899999999999999999999999998 99999999999
Q ss_pred cchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 004057 198 IDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAAL 277 (776)
Q Consensus 198 ~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 277 (776)
+..+. ....+.+|+|+|+| ||+||||++|.+|+.+..+. . ...+++++++.+++.++
T Consensus 150 ~~~~~----~~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g~~~~-----------~----~~~~~~~~~~~~~~~~~ 206 (875)
T PRK09819 150 GVSDR----HGTDKTEFLWQSDD----GSEVLAQQLPLGYAIGKYLP-----------E----DEEELKKRLDEYFGVLE 206 (875)
T ss_pred ccccc----ccCCCceEEEECCC----CCeEEEEECccccccCCCCC-----------c----CHHHHHHHHHHHHHHHh
Confidence 75321 11245699999999 99999999999997653221 1 12467777777777665
Q ss_pred HhcccCCCCeeEEeccCCccCCchhhHHHHHHHHHHHHhcC-CceeEEEcChHHHHHHHHhCCCCCCCccCCccc-cccc
Q 004057 278 TQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG-GRVNALYSTPSLYTEAKNAANGPWPLKTDDYFP-YADR 355 (776)
Q Consensus 278 ~~~~~~~~~~il~~~G~Df~~~~a~~~~~~~~~li~~~n~~-~~~~i~~sT~~~yf~~~~~~~~~~p~~~gD~~p-y~~~ 355 (776)
++ ..++++|+|+|+|+.+.. ++|.++++.+|+. +.+++++||+++||+++++....||+++|||++ +.
T Consensus 207 ~~---~~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y-- 276 (875)
T PRK09819 207 KK---SSTKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKY-- 276 (875)
T ss_pred hc---CCCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcc--
Confidence 54 578999999999986544 6788889999875 578999999999999998877889999999983 22
Q ss_pred CCCcccceeecchhhHHHHHHHHHHHHH-HHHHHHhh---CCCCCCCchHHHHHHHHhhccccCCCCCCchhhHHHHHHH
Q 004057 356 RNAYWTGFFTSRPALKGYVRVLSGFYLA-SRQLEFLA---GKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKR 431 (776)
Q Consensus 356 ~~~~wtG~ytSr~~~K~~~R~~e~~L~~-ae~l~~l~---~~~~~~~~~~~~w~~l~~~qhHD~ItGts~~~V~~d~~~r 431 (776)
.++|+|+||||+.+|++||++|++|+. +|.|.+++ |..||...++++||.|+++||||+||||++++|++|+..|
T Consensus 277 -~~~HrG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~r 355 (875)
T PRK09819 277 -MRVHRSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVAR 355 (875)
T ss_pred -ccccCCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHHH
Confidence 346699999999999999999999984 88888874 5678888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCccccccCCCCCCCCCCCCceEEEEEcCCCceeeEEEEEEEc
Q 004057 432 LAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVN 511 (776)
Q Consensus 432 l~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~~~V~i~v~ 511 (776)
+.++.+.++++++.+++.|+..+. .+....++||||++|+|+++|++++.
T Consensus 356 ~~~~~~~~~~l~~~~l~~l~~~i~------------------------------~~~~~~~~vfN~l~~~r~~~v~i~~~ 405 (875)
T PRK09819 356 YKLAEDLADNLLDFYMRKIADNMP------------------------------QSDADKLTVFNLLPYEREEVINTTVY 405 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------------------------------cCCCCEEEEEcCCCccceeEEEEEEE
Confidence 999999999999999999986531 12346799999999999999998764
Q ss_pred --CCcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCCCeEEEEEEE-eeCCCceEEEEEEecCCccccccc
Q 004057 512 --DANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQV-TVPPLGWNTYFISRAAGKVKRRKG 588 (776)
Q Consensus 512 --~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~-~vPplG~~~~~i~~~~~~~~~~~~ 588 (776)
..++.|.|.+|+++++|++.....+......... ..+ ......++.+.|.+ +||||||++|.+.+.+.....
T Consensus 406 ~~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~--- 480 (875)
T PRK09819 406 LPASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIV-HYG-NYDPFMEFDIQINVQILPAMGYRTLYIELNEEGNVI--- 480 (875)
T ss_pred eccCCEEEECCCCCEeeEEEeeccccccchhhccee-ccC-CCCceEEEEEEEEECCCCCcccEEEEEEeCCccccc---
Confidence 5788999999999999998654322111000000 000 00001256788885 999999999999765432111
Q ss_pred cccccCCCCCCceEecCCeEEEEEECCCCceEEEEecCCceEEeeeeeEEEEeeccCCCCccceeEecCCCc-ceecCC-
Q 004057 589 FFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQ-PNVVSR- 666 (776)
Q Consensus 589 ~~~~~~~~~~~~~~leN~~~~v~~~~~~G~i~sl~dk~~g~~~~~~~~~~~Y~~~~~~~~~gaY~f~p~~~~-~~~~~~- 666 (776)
.........|||++|+|+|+ ++|.| +|+||.+|+++. ++..|++ .++.||+|+|.|...+ ......
T Consensus 481 -----~~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~d--~~d~gD~yd~~p~~~d~~~~~~~~ 548 (875)
T PRK09819 481 -----EPKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD---RQLIIEE--NGDDGDEYDYSPPREDWVITSAEA 548 (875)
T ss_pred -----cccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe---ceEEEEe--cCcCCCCcccCCCCCCCEEeccCC
Confidence 01223467899999999999 78999 599999999985 3344453 3789999999987643 332322
Q ss_pred CccEEEEecCcEEEEEEEe------------------cceEEEEEEEecCCCceEEEEEEccccccCCCCcEEEEEEeee
Q 004057 667 SVPIKIIRGPMVDEVHQQF------------------NSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTAN 728 (776)
Q Consensus 667 ~~~i~i~~Gpl~~~i~~~~------------------~~~i~q~irLy~~~~~ie~~~~V~~~~~~~~~~~el~~~f~t~ 728 (776)
...+++++||+++++++.+ .+.++|+++|++++++|+|+++|+|+ +++|+|++.|+++
T Consensus 549 ~~~~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lrv~fp~~ 624 (875)
T PRK09819 549 VPSVEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLRVLFPTE 624 (875)
T ss_pred cceEEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEEEEccCC
Confidence 3467788899988877754 24788999999999999999999999 7899999999999
Q ss_pred ccCCceEEEccCCCceeeecccc--ccCcccccccccccccccccccc
Q 004057 729 MVTEKVFYTDSNGRDFLKRVRDY--RADWSLQVNEPVAGNYYPVIFFL 774 (776)
Q Consensus 729 i~s~~~~ytDsnG~~~ikR~~~~--~~~w~~~~~~pi~~NyYPv~s~~ 774 (776)
|.++.++ .| .+|++|+|+++. .++|+....+..+-+-||+.+.+
T Consensus 625 i~~~~~~-~d-~~fG~i~Rp~~~~~~~~W~~~~~~e~p~~~~~~~~~v 670 (875)
T PRK09819 625 IASKFSL-AD-QQFGSITRPVNDPAMDVWEQEGWQEAPISIEPMQSFV 670 (875)
T ss_pred CCCCceE-cC-CCceEEECCCcCccccccccccceeCCCCChhhhceE
Confidence 9997655 56 689999999876 46898776554455778887655
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-79 Score=652.40 Aligned_cols=573 Identities=17% Similarity=0.243 Sum_probs=465.4
Q ss_pred CCeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhcChHHHHHH
Q 004057 38 AGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQV 117 (776)
Q Consensus 38 ~~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~p~~~~~v 117 (776)
..+-+||.|+|+|+|.+|||+|.|.++ ++.+...+.+.+|+++|+|+|+.++..-| +|+++.+|+.++++
T Consensus 278 es~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQAqQ~-~WlkedhP~~f~kl 347 (1078)
T KOG4342|consen 278 ESQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQAQQL-EWLKEDHPGLFSKL 347 (1078)
T ss_pred ccccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhhHHHH-HHHhhhChhHHHHH
Confidence 456889999999999999999999986 78889999999999999999999877666 89999999999999
Q ss_pred HHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhhcCCcEEEEee
Q 004057 118 RKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFAR 197 (776)
Q Consensus 118 k~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~~G~~~~v~~R 197 (776)
++.+..||+-.|||.||++|.++|+|||+|||++.|++|+.++||...+.-|+||+||+|+|||||.+ .+||+.|.+++
T Consensus 348 ~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQicr-lcGidrFLTQK 426 (1078)
T KOG4342|consen 348 QEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQICR-LCGIDRFLTQK 426 (1078)
T ss_pred HHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHHH-hhcHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cchhhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCC-CCCCCCCCCcccCCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 004057 198 IDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPV-HYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAA 276 (776)
Q Consensus 198 ~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~-~Y~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 276 (776)
.+|+..|.+++. .|.|.|.| ||+|++|+.|. .|... -+ +++.+..+
T Consensus 427 LSWNniNSFPhs---TFnW~glD----GSqvl~HmPPgntYtad----------------------~~----v~dVL~tv 473 (1078)
T KOG4342|consen 427 LSWNNINSFPHS---TFNWEGLD----GSQVLVHMPPGNTYTAD----------------------GS----VEDVLKTV 473 (1078)
T ss_pred ccccccCcCCcc---ceeeeecc----CceEEEecCCCCccccc----------------------Cc----HHHHHHHH
Confidence 999999999877 99999999 99999997664 36432 12 23344444
Q ss_pred HHhcccCCCCeeEEeccCCccCCchhhHHHHHHHHHH---HHhcCC-ceeEEEc-ChHHHHHHHHhC---CCCCCCccCC
Q 004057 277 LTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIH---YVNKGG-RVNALYS-TPSLYTEAKNAA---NGPWPLKTDD 348 (776)
Q Consensus 277 ~~~~~~~~~~~il~~~G~Df~~~~a~~~~~~~~~li~---~~n~~~-~~~i~~s-T~~~yf~~~~~~---~~~~p~~~gD 348 (776)
.+..+.-+.++-|+.+|-.. +.+||+-+++++|.+ .-|.++ -|+++.+ |+++||+++.+. +..||+|.||
T Consensus 474 ~qnk~~~~~~~gl~lfG~GD--GGGGPT~eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~GE 551 (1078)
T KOG4342|consen 474 AQNKDKGRANHGLFLFGFGD--GGGGPTQEMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVGE 551 (1078)
T ss_pred HhcCCccccCcceEEEEecC--CCCCCcHHHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccchh
Confidence 44333344445455554211 256788788887766 335555 7899998 999999999775 4569999999
Q ss_pred cccccccCCCcccceeecchhhHHHHHHHHHHHHHHHHHHHhhC-----CCCCCCchHHHHHHHHhhccccCCCCCCchh
Q 004057 349 YFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAG-----KKSPGPTTSALGDALGIAQHHDAVTGTAKQH 423 (776)
Q Consensus 349 ~~py~~~~~~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~~-----~~~~~~~~~~~w~~l~~~qhHD~ItGts~~~ 423 (776)
+| .++++|+|||++.+|+++|++|..|+.+|.+.+++. -.||...+..+|+.++++||||.++|++++.
T Consensus 552 Ly------fEfHrGTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCIeM 625 (1078)
T KOG4342|consen 552 LY------FEFHRGTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCIEM 625 (1078)
T ss_pred eE------EEEecCceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHHHH
Confidence 98 789999999999999999999999999999999863 3567788999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCccccccCCCCCCCCCCCCceEEEEEcCCCceee
Q 004057 424 TTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRT 503 (776)
Q Consensus 424 V~~d~~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~ 503 (776)
|+++.+-.+....+.++.++..+++.|.... +....+++.|+|+|+|.
T Consensus 626 VykeA~p~~~~v~k~~~tLl~~a~~~L~as~--------------------------------s~ke~L~~~nTLpW~~~ 673 (1078)
T KOG4342|consen 626 VYKEAMPHYEDVRKHGNTLLSAAAAALCASE--------------------------------SGKEGLLIVNTLPWKRI 673 (1078)
T ss_pred HHHhhhhHHHHHHHhhHHHHHHHHHHHhcCC--------------------------------CCccceEEEecccccee
Confidence 9999999999999999999999999885322 12335889999999999
Q ss_pred EEEEEEEcCCcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCCCeEEEEEEEeeCCCceEEEEEEecCCcc
Q 004057 504 DIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKV 583 (776)
Q Consensus 504 ~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~ 583 (776)
+++.++-+.+... .-..++|.+|++... +.
T Consensus 674 ~v~~~~kp~k~~~--------------------------------------------~e~c~~~g~~ta~vt-----~~- 703 (1078)
T KOG4342|consen 674 EVMALPKPGKAHS--------------------------------------------LELCTVPGMGTAPVT-----PP- 703 (1078)
T ss_pred eeecccCCCCcee--------------------------------------------EEEeccCCccccCCC-----CC-
Confidence 9877664432111 011355655554311 00
Q ss_pred ccccccccccCCCCCCceEecCCeEEEEEECCCCceEEEEecCCceEEee---------eeeEEEEeeccCCCCccceeE
Q 004057 584 KRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPI---------QQSFLWYGSMVDTQSSGAYIF 654 (776)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~leN~~~~v~~~~~~G~i~sl~dk~~g~~~~~---------~~~~~~Y~~~~~~~~~gaY~f 654 (776)
.+++.. -..++.++|.|+.+||+++ .+|.|+||+|...|+++.. .++|.+|++ .+-.|.||+-
T Consensus 704 ---~~p~~~--yq~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD--~PL~WqAWDt 775 (1078)
T KOG4342|consen 704 ---TSPVFV--YQTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDD--VPLYWQAWDT 775 (1078)
T ss_pred ---CCceeE--EecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecC--Cccchhhhhh
Confidence 011110 1245678999999999999 6899999999999998762 268999985 2667888853
Q ss_pred ecCCCccee-cCCCccEEE-EecCcEEEEEEEe----cceEEEEEEEecCC-----CceEEEEEEccccccCCCCcEEEE
Q 004057 655 RPNGAQPNV-VSRSVPIKI-IRGPMVDEVHQQF----NSWIYQVTRLYIDK-----EHAEVEYTIGPIPTEDSVGKEVIS 723 (776)
Q Consensus 655 ~p~~~~~~~-~~~~~~i~i-~~Gpl~~~i~~~~----~~~i~q~irLy~~~-----~~ie~~~~V~~~~~~~~~~~el~~ 723 (776)
.-..-+..+ +.....+.| .+|+++..+.+.+ ++.++++|.|..+. +.++|.++|+|+ +.++.|+|
T Consensus 776 e~ysle~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~Wh----e~~KFLKV 851 (1078)
T KOG4342|consen 776 EDYSLERYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVHWH----EAHKFLKV 851 (1078)
T ss_pred hhhceecceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEeeh----hcCceEEe
Confidence 321111222 333445776 8999998877654 57899999997765 789999999998 78999999
Q ss_pred EEeeeccCCceEEEccCCCceeeeccccccCcccc
Q 004057 724 RMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQ 758 (776)
Q Consensus 724 ~f~t~i~s~~~~ytDsnG~~~ikR~~~~~~~w~~~ 758 (776)
.||.+|+++.+.|.. .|++.|||++|+++|+..
T Consensus 852 EFPv~irs~fAsYEt--QFGitkRPTHYNTSWDvA 884 (1078)
T KOG4342|consen 852 EFPVRIRSSFASYET--QFGITKRPTHYNTSWDVA 884 (1078)
T ss_pred eccccccccchhhhh--hcccccCCccccccchhh
Confidence 999999998888865 588999999999999964
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=3e-60 Score=502.23 Aligned_cols=273 Identities=30% Similarity=0.501 Sum_probs=216.7
Q ss_pred EEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhcChHHHHHHHHHH
Q 004057 42 NVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLV 121 (776)
Q Consensus 42 ~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv 121 (776)
+||+|||||||+||++|+++|. ..+.++|+++++.|+++|+++|+++|..++ +||.+..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~-~~~~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYL-EDYLEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHH-HHHHHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHH-HHHHHhCCHHHHHHHHHH
Confidence 6999999999999999999996 489999999999999999999998888888 555666999999999999
Q ss_pred HcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhhcCCcEEEEeecchh
Q 004057 122 DASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQ 201 (776)
Q Consensus 122 ~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~~G~~~~v~~R~~~~ 201 (776)
++|||||+||+|+|+|++++++|++||||++|++|++++||..|++||+||+|||++++||||+ ++||++++++|++++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il~-~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQILK-QFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHHH-TTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHHh-ccCcceEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred hhhhhccCCceeEEEEcCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCCCCCCCCccccHHHHHHHHHHHHHHhcc
Q 004057 202 DRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQAN 281 (776)
Q Consensus 202 ~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 281 (776)
.++.++.+...+|+|+|+| ||+||||+++.+|..+. .+ ... +.++.+++.+++.++
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~-~~------------------~~~-~~~~~~~~~~~~~~~ 205 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPW-YG------------------SEF-EDADELLEQLRKLAK 205 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHH-TT------------------CCH-HHHHHHHHHHHHHHC
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCC-CC------------------ccc-ccHHHHHHHHHHHHH
Confidence 9988877788899999999 99999999999876521 00 011 346778888888888
Q ss_pred cCCCCeeEEeccCCccCCchhhHHHHHHHHHHHHhcC-CceeEEEcChHHHHHHHHhCCCCCCCc-cCCccccc
Q 004057 282 VTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG-GRVNALYSTPSLYTEAKNAANGPWPLK-TDDYFPYA 353 (776)
Q Consensus 282 ~~~~~~il~~~G~Df~~~~a~~~~~~~~~li~~~n~~-~~~~i~~sT~~~yf~~~~~~~~~~p~~-~gD~~py~ 353 (776)
.+.++++|+|+|+|. +..+....+.+.|+.+|+. ..+++++||+++||++++++ .++|+. +|||+||+
T Consensus 206 ~~~~~~~l~~~G~d~---~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 206 KYYTNNILIPYGDDD---DGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CSSSSEEEEEEEEEH---HHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred hcCCCceEEEeecCC---CCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 899999999999982 2333345555566666653 58999999999999999998 899999 99999985
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-48 Score=461.47 Aligned_cols=533 Identities=18% Similarity=0.213 Sum_probs=407.5
Q ss_pred eEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhcChHHHHHHHHH
Q 004057 41 LNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKL 120 (776)
Q Consensus 41 ~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~p~~~~~vk~l 120 (776)
..|+.+.|+|.|..|+|++++..+ +....+.+++..|+..|.++|..+...++ .|..+..|+..++ ++
T Consensus 198 ~~I~~~ghahid~aWlw~l~et~r---------~a~ts~~~~~~l~D~~p~~~~~~s~~~~y-~~l~~d~p~l~~~--~~ 265 (943)
T COG0383 198 NEIPAVGHAHIDTAWLWPLDETER---------KASTSFSLVMNLMDHYPVQKFVQSAAALY-NWLKPDVPFLFSR--PA 265 (943)
T ss_pred ccccccchhhHHHHHhccHHHHHH---------HHhhhhhheecccccChhhhhhhhHHHHH-HHhcCccHHHhhc--cc
Confidence 339999999999999999999985 78899999999999999999998766665 9999999999999 99
Q ss_pred HHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhhcCCcEEEEeecch
Q 004057 121 VDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDY 200 (776)
Q Consensus 121 v~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~~G~~~~v~~R~~~ 200 (776)
|+.|+|++++|+|+.+|.++++||+++||+++|+||+.++||...++.|.||+||.|++|||||. .+|+++|+++++.|
T Consensus 266 v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~-p~gi~~f~t~klaw 344 (943)
T COG0383 266 VEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILE-PLGIDVFVTTKLAW 344 (943)
T ss_pred ccccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHH-hhcchhhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred hhhhhhccCCceeEEEEcCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCCCCCCCCccccHHHHHHHHHHHHHHhc
Q 004057 201 QDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQA 280 (776)
Q Consensus 201 ~~~~~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 280 (776)
++.+.++++ .|.|+++| |+++++|..+.+++.. + + .+ . .+.+..
T Consensus 345 n~tn~~Ph~---~~~w~~~d----g~e~~~hds~~~~~~d-----------------~------v-~~--~--~~~r~~- 388 (943)
T COG0383 345 NDTNRFPHD---LLRWRWKD----GTENLAHDSICGCSSD-----------------P------V-HR--E--MEYRFE- 388 (943)
T ss_pred hhccCCChh---Hheeeccc----ccccceeecCCCCccc-----------------H------H-HH--H--HHhhhh-
Confidence 999999986 89999999 9999999766555211 0 0 01 0 111111
Q ss_pred ccCCCCeeEEeccC-CccCCchhhHHHHHHHHHHHHhcCCceeEEEcChHHHHHH----HHhCCCCCCCccCCccccccc
Q 004057 281 NVTRDNHIMWTMGD-DFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEA----KNAANGPWPLKTDDYFPYADR 355 (776)
Q Consensus 281 ~~~~~~~il~~~G~-Df~~~~a~~~~~~~~~li~~~n~~~~~~i~~sT~~~yf~~----~~~~~~~~p~~~gD~~py~~~ 355 (776)
. .....++.+|. |+ .++|....++... ...+..+|.. +.......|++.|++|
T Consensus 389 ~--~~~~~~~~~g~gd~---ggg~~~dm~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely----- 446 (943)
T COG0383 389 K--INQVGLYLYGYGDG---GGGPSIDMLENPE------------LPIAEGVFNTGVEKKTSTLELVPTWDGELY----- 446 (943)
T ss_pred h--hccceeEEeeccCC---CCCCCHHHHhccc------------cccccceeeecceeeeeecccccccchhhh-----
Confidence 1 22234555552 32 3445533333211 1122222222 1122456899999998
Q ss_pred CCCcccceeecchhhHHHHHHHHHHHHHHHHHHHhh----C--CCCCCCchHHHHHHHHhhccccCCCCCCchhhHH-HH
Q 004057 356 RNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA----G--KKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTN-DY 428 (776)
Q Consensus 356 ~~~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~----~--~~~~~~~~~~~w~~l~~~qhHD~ItGts~~~V~~-d~ 428 (776)
.++++|+||++...|+++|.+|..|+.+|.+.+++ + ..++...++++|+.++++|+||.++|+++..|+. +.
T Consensus 447 -~E~hrg~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~~a 525 (943)
T COG0383 447 -LELHRGTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSYDA 525 (943)
T ss_pred -hhccCceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechhhH
Confidence 68899999999999999999999999999888773 2 4567788999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCccccccCCCCCCCCCCCCceEEEEEcCCCceeeEEEEE
Q 004057 429 AKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRI 508 (776)
Q Consensus 429 ~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~~~V~i 508 (776)
...+......+..++..+++.|.+. ......++|++.|++.
T Consensus 526 ~~~~~~~~~~~~~i~~~~~~~l~~~----------------------------------~~e~~~~~~~~~~~~~----- 566 (943)
T COG0383 526 LPLLEVVQKGASKIAELALKVLSSQ----------------------------------CLENLFVKNTLSWNGI----- 566 (943)
T ss_pred HHHHHhhhccchhhhhhhhhhhhhc----------------------------------cccceEEEeeccCCcc-----
Confidence 8888888888888888888877432 1234789999999981
Q ss_pred EEcCCcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCCCeEEEEEEEeeCCCceEEEEEEecCCccccccc
Q 004057 509 PVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKG 588 (776)
Q Consensus 509 ~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~~~~~ 588 (776)
.+++.|..++.++.+.+. ...++|++|..-+.+++.....
T Consensus 567 -----~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~~----- 606 (943)
T COG0383 567 -----SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTEP----- 606 (943)
T ss_pred -----eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEeccccccc-----
Confidence 445666555544432211 1236888888887774322111
Q ss_pred cccccCCCCCCceEecCCeEEEEEECCCCceEEEEecCCceEEeeeeeEEEEeeccCCCCccceeEecCCC-cceecCCC
Q 004057 589 FFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGA-QPNVVSRS 667 (776)
Q Consensus 589 ~~~~~~~~~~~~~~leN~~~~v~~~~~~G~i~sl~dk~~g~~~~~~~~~~~Y~~~~~~~~~gaY~f~p~~~-~~~~~~~~ 667 (776)
.....+++..+..++ ++| +.+..|+. .+..+++|+-.+... +.......
T Consensus 607 ----------~~~~~~~~~~~~~~~-~~g-----------------n~~~~~~~--~~~~~~~w~i~~~~~~~~~~~~~~ 656 (943)
T COG0383 607 ----------ETVIEEKEWKRLIIN-DTG-----------------NQLALIED--EPAYWDAWNIDKFLEEELLALTAL 656 (943)
T ss_pred ----------cccccccchheeecc-CCC-----------------cceeeeec--ccceechhcchhhhhhhhhhhhcc
Confidence 122334444555555 555 23344442 144567777666443 23333333
Q ss_pred ccEE-EEecCcEEEEEEEe---cceEEEEEEEecCCCceEEEEEEccccccCCCCcEEEEEEeeeccCCceEEEccCCCc
Q 004057 668 VPIK-IIRGPMVDEVHQQF---NSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRD 743 (776)
Q Consensus 668 ~~i~-i~~Gpl~~~i~~~~---~~~i~q~irLy~~~~~ie~~~~V~~~~~~~~~~~el~~~f~t~i~s~~~~ytDsnG~~ 743 (776)
. +. +++||++.++++.. .+.++|.++|++++++|+|+++|||+ ..+|+|+|.||+++.++.+. .| -.|+
T Consensus 657 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~a~-~d-~~fg 729 (943)
T COG0383 657 P-EEAIENGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDFAT-AD-IPFG 729 (943)
T ss_pred c-cchhccccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEeccccccccee-cc-ccce
Confidence 4 44 69999999988865 46789999999999999999999998 78999999999999997554 45 6899
Q ss_pred eeeeccccccCccccccc
Q 004057 744 FLKRVRDYRADWSLQVNE 761 (776)
Q Consensus 744 ~ikR~~~~~~~w~~~~~~ 761 (776)
.++|+++.+++|+....+
T Consensus 730 ~v~Rp~~~~~~W~~a~~e 747 (943)
T COG0383 730 VVERPTHPNTSWENARFE 747 (943)
T ss_pred eeccCCCCchhhhcccCc
Confidence 999999999999976443
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=99.96 E-value=3.5e-28 Score=276.88 Aligned_cols=236 Identities=30% Similarity=0.464 Sum_probs=170.6
Q ss_pred eEEEEEcCCCceeeEEEEEEEcCCcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCCCeEEEEEEEeeCCC
Q 004057 490 LVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPL 569 (776)
Q Consensus 490 ~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPpl 569 (776)
++|+|||||+|+|+++|+++++.+.+.+.|.+|++|++|+++... ....++|+|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 469999999999999999999999999999999999999998311 1255789998899999
Q ss_pred ceEEEEEEecCCccccccccccccCCCCCCceEecCCeEEEEEECCCCceEEEEecCCceEEe--eeeeEEEEeeccC--
Q 004057 570 GWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVP--IQQSFLWYGSMVD-- 645 (776)
Q Consensus 570 G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~leN~~~~v~~~~~~G~i~sl~dk~~g~~~~--~~~~~~~Y~~~~~-- 645 (776)
||++|.|...+........... ...++..|||++|+|+||+.+|.|.+|+||++|+++. ..+++..|.+...
T Consensus 62 Gy~~~~i~~~~~~~~~~~~~~~----~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~~ 137 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEASIA----KDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGDY 137 (457)
T ss_dssp EEEEEEEEECSS--TTC--CEE----ETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSCT
T ss_pred eeEEEEeeccccccccccceee----cceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEeccccccc
Confidence 9999999997764433110000 0113479999999999996569999999999999999 8888988875210
Q ss_pred ------CCCccceeEecCCCcceecCCCccEEEEecCcEEEEEE------------------EecceEEEEEEEecCCCc
Q 004057 646 ------TQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQ------------------QFNSWIYQVTRLYIDKEH 701 (776)
Q Consensus 646 ------~~~~gaY~f~p~~~~~~~~~~~~~i~i~~Gpl~~~i~~------------------~~~~~i~q~irLy~~~~~ 701 (776)
.+.+|+|.|.| +||+...+.+ ...+.++++++||+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~-----------------~g~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ 200 (457)
T PF07748_consen 138 DISPLELQRSGAYLFVE-----------------DGPLRSSIRVEYKFELPKNLSLVKRSEQTGSSRITQTIRLYKGSPR 200 (457)
T ss_dssp TE-SCCCGSEECCEEEE-----------------ESSSEEEEEEEEEEEEESCBECEEEESCEEEEEEEEEEEEETTESS
T ss_pred cccccccccCceEEEEe-----------------cCCceEEEEEEEEEeccCCcEEEEEEEeccceEEEEEEEEecCceE
Confidence 11344555554 3444443332 234578999999999999
Q ss_pred eEEEEEEccccccCCCCc-EEEEEEeeeccCCceEEEccCCCceeeeccccccCcccccccccccccccccccccC
Q 004057 702 AEVEYTIGPIPTEDSVGK-EVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPVIFFLLI 776 (776)
Q Consensus 702 ie~~~~V~~~~~~~~~~~-el~~~f~t~i~s~~~~ytDsnG~~~ikR~~~~~~~w~~~~~~pi~~NyYPv~s~~~i 776 (776)
|||++.||+.+ +.++ +|+++|+|+|.++.++|+|++|+.+.+|+++ .+.|.++|||||++.+||
T Consensus 201 ie~~~~vdn~~---~~~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~--------~~~~~~~~~~p~~~~~~v 265 (457)
T PF07748_consen 201 IEFETEVDNWA---EDHRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTH--------PNTPWEANYYPVPSHAFV 265 (457)
T ss_dssp EEEEEEEEE-T---TSCEEEEEEEEEES-S-TCEEEEESTTEEEEECESS--------TTTTCGGG-EEECSCCEE
T ss_pred EEEEEEecccc---cCCceeEEEEeecCCCCCCEEEECCCCeEEecCCcc--------ccCCcccccCCCcceEEE
Confidence 99999999442 2233 6999999999999999999877444433654 347889999999998875
No 9
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=9e-26 Score=268.74 Aligned_cols=357 Identities=17% Similarity=0.163 Sum_probs=267.4
Q ss_pred CeeEEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCc-EEEehhHHHHHHHhhcChHHHHHH
Q 004057 39 GKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRK-FVFAEMAFFHRWWVGQSPEIQEQV 117 (776)
Q Consensus 39 ~~~~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~-F~~~e~~~~~~w~~~~~p~~~~~v 117 (776)
.++.+|++.|+|||++|+.+.+.++. .+...++.+++.++++|.+. |..+++....+.+....|+.++++
T Consensus 2 ~~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~ 72 (943)
T COG0383 2 LKKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRV 72 (943)
T ss_pred CccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhH
Confidence 34567999999999999999999987 46667999999999999544 999998887788888999999999
Q ss_pred HHHHHcCcEEEEccee-eeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhhcCCcEEEEe
Q 004057 118 RKLVDASQLEFVNGGW-CMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFA 196 (776)
Q Consensus 118 k~lv~~Grle~v~G~w-v~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~~G~~~~v~~ 196 (776)
+.+++.|++ .+|+| .+.|.+++++|+.+|++++|.. ...++|..++.||.+|.||+..|.|+++. .+||+.+.|+
T Consensus 73 ~~~~~~~~l--~ig~~~~~~~~~~~~~e~~~rn~l~~~~-~~~~~~~~~~~g~~~d~~g~~~qa~~~~~-~~~i~~~~f~ 148 (943)
T COG0383 73 KLLIASGKL--GIGPWYTQTDTFILSGESNVRNLLIGEF-DAERFGKAMKLGYFPDTFGNLGQAPQLYE-NAGISAVAFG 148 (943)
T ss_pred HHHHhhcCc--cccCCCCeeEEEEeccccceeeeecchH-HHHHhhhhhccccccccchhhhhhhHHHH-hcCCchhhcc
Confidence 999999999 46888 9999999999999999999999 56777899999999999999999999998 9999999999
Q ss_pred ecchhhh--h-------hhccCCceeEEEEcCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCCCCCCCCccccHHH
Q 004057 197 RIDYQDR--A-------KRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQ 267 (776)
Q Consensus 197 R~~~~~~--~-------~~~~~~~~eF~W~g~d~~~~gs~v~t~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 267 (776)
|+..-.. + ........+..|.++| |++++.+.++..|..+..+.-.+- ..++-
T Consensus 149 r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g~~I~~~gh--------------ahid~ 210 (943)
T COG0383 149 RGAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNGNEIPAVGH--------------AHIDT 210 (943)
T ss_pred cccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhccccccccch--------------hhHHH
Confidence 9874211 0 0112334477899998 889999889999988765321110 12333
Q ss_pred HHHHHHHHHHHhcccCCCCeeEEeccCCccCCchhhHHHHHHHHHHHHhcC-CceeEEEcC----hHHHHHHHHhC-CCC
Q 004057 268 WVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKG-GRVNALYST----PSLYTEAKNAA-NGP 341 (776)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~il~~~G~Df~~~~a~~~~~~~~~li~~~n~~-~~~~i~~sT----~~~yf~~~~~~-~~~ 341 (776)
.+..-++..++. ..+...++|.|+|+.+.. .++...+++.|.- ......|+. ..+|+...... ...
T Consensus 211 aWlw~l~et~r~---a~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERK---ASTSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHH---HhhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 344444554444 355678899999987655 7777777777743 233334444 44444433322 235
Q ss_pred CCCccCCccccc-ccCCCcc--cceeecchhhHHHHHHHHHHHH-HHHHHHH-------h---hCCCCCCCchHHHHHHH
Q 004057 342 WPLKTDDYFPYA-DRRNAYW--TGFFTSRPALKGYVRVLSGFYL-ASRQLEF-------L---AGKKSPGPTTSALGDAL 407 (776)
Q Consensus 342 ~p~~~gD~~py~-~~~~~~w--tG~ytSr~~~K~~~R~~e~~L~-~ae~l~~-------l---~~~~~~~~~~~~~w~~l 407 (776)
+++.+||+..-. .+...|. ....+||..+|..+-..+..|- .++.+.. + .+.++|+..+.-.|+..
T Consensus 283 ~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~~dg 362 (943)
T COG0383 283 LNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRWKDG 362 (943)
T ss_pred CCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeecccc
Confidence 688999996321 1111111 3556999999999888777775 2222222 1 23456777777889999
Q ss_pred HhhccccCCCCCCchhhHHHHHHHHHH
Q 004057 408 GIAQHHDAVTGTAKQHTTNDYAKRLAI 434 (776)
Q Consensus 408 ~~~qhHD~ItGts~~~V~~d~~~rl~~ 434 (776)
+.++.||++|||+.+.|+.++..|...
T Consensus 363 ~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 363 TENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred cccceeecCCCCcccHHHHHHHhhhhh
Confidence 999999999999999999999998866
No 10
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.84 E-value=5.5e-22 Score=167.77 Aligned_cols=75 Identities=37% Similarity=0.578 Sum_probs=65.3
Q ss_pred CcccceeecchhhHHHHHHHHHHHHHHHHHHHhhC-----CCCCCCchHHHHHHHHhhccccCCCCCCchhhHHHHHHHH
Q 004057 358 AYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAG-----KKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRL 432 (776)
Q Consensus 358 ~~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~~-----~~~~~~~~~~~w~~l~~~qhHD~ItGts~~~V~~d~~~rl 432 (776)
+||+|||||||.+|+++|.+|++|+.||.|.+++. ..++...++++|+.|+++||||+||||+++.|++|+.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 58999999999999999999999999999999842 2356678999999999999999999999999999999886
No 11
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.82 E-value=1.1e-20 Score=159.31 Aligned_cols=74 Identities=42% Similarity=0.565 Sum_probs=68.8
Q ss_pred cccceeecchhhHHHHHHHHHHHHHHHHHHHhh-----CCCCCCCchHHHHHHHHhhccccCCCCCCchhhHHHHHHHH
Q 004057 359 YWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA-----GKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRL 432 (776)
Q Consensus 359 ~wtG~ytSr~~~K~~~R~~e~~L~~ae~l~~l~-----~~~~~~~~~~~~w~~l~~~qhHD~ItGts~~~V~~d~~~rl 432 (776)
||+||||||+.+|+++|++|++|+.+|.+.+++ +..+|...++.+|+.|+++||||+||||++++|++|+..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 699999999999999999999999999999884 45677788999999999999999999999999999999874
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.75 E-value=3.5e-08 Score=108.62 Aligned_cols=122 Identities=20% Similarity=0.269 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhcChHH-----------------------------------------
Q 004057 75 VENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEI----------------------------------------- 113 (776)
Q Consensus 75 v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~p~~----------------------------------------- 113 (776)
..+.+-.++..|++.|++|++++=...+.+++....+..
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 456666788888888878877765555667887777777
Q ss_pred -----HHHHHHHHHcCcEEEEcceeeeecccCCCH-HHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhh
Q 004057 114 -----QEQVRKLVDASQLEFVNGGWCMHDEATTHY-VDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVE 187 (776)
Q Consensus 114 -----~~~vk~lv~~Grle~v~G~wv~~De~~~~~-es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~ 187 (776)
.+.+|+|+++|++|+++++|..+=..+... |++..|+..|.+.+++.||.+|+..|.|.. +.+..+..+|+ +
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE~-a~~~~l~~~l~-~ 185 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPEC-AYSPGLEEILA-E 185 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GGG--B-TTHHHHHH-H
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECccc-ccCHHHHHHHH-H
Confidence 999999999999999999998888888888 999999999999999999999999999976 89999999997 9
Q ss_pred cCCcEEEEeec
Q 004057 188 LGFDSVHFARI 198 (776)
Q Consensus 188 ~G~~~~v~~R~ 198 (776)
+||+++++.--
T Consensus 186 ~Gi~~~i~d~~ 196 (360)
T PF03065_consen 186 AGIRYTILDGH 196 (360)
T ss_dssp TT--EEEEECH
T ss_pred cCCEEEEECcH
Confidence 99999998643
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00053 Score=74.44 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=79.6
Q ss_pred HHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecc-cCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhH
Q 004057 103 HRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDE-ATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQA 181 (776)
Q Consensus 103 ~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De-~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p 181 (776)
...|+..++...++||++.+.|.+|+++++.+-.-- .+-..|++=-|++.|.+-..++||..|+--|+|.+ ++...++
T Consensus 115 ~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg~~P~GiWlPEc-ay~pgie 193 (504)
T COG1543 115 RGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFGLAPKGIWLPEC-AYAPGIE 193 (504)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhCCCCCceechhh-ccccchH
Confidence 356777888999999999999999999887744332 33345899999999999899999999999999976 9999999
Q ss_pred HHHHhhcCCcEEEEe
Q 004057 182 YLLGVELGFDSVHFA 196 (776)
Q Consensus 182 ~il~~~~G~~~~v~~ 196 (776)
.+|+ .+||+++++-
T Consensus 194 ~~l~-~~Gi~yf~vd 207 (504)
T COG1543 194 RILK-DAGIEYFFVD 207 (504)
T ss_pred HHHH-hcCceEEEec
Confidence 9998 9999999985
No 14
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=96.54 E-value=0.021 Score=52.21 Aligned_cols=103 Identities=21% Similarity=0.382 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCC-CCcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHH
Q 004057 77 NVLDSVVEALRRDP-NRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHH 155 (776)
Q Consensus 77 ~~l~~vl~~l~~~p-~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~ 155 (776)
.....+++.|+++. ...|..... +..+ ..+.+++++++| +||.+-+|.-++....+.|.+.++|..+.+
T Consensus 18 ~~~~~~~~~l~~~~i~at~fv~~~-~~~~--------~~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~ 87 (123)
T PF01522_consen 18 DNYDRLLPLLKKYGIPATFFVIGS-WVER--------YPDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSRE 87 (123)
T ss_dssp THHHHHHHHHHHTT--EEEEE-HH-HHHH--------HHHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccceeeeeccc-cccc--------ccccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHH
Confidence 46678888888874 233444333 2222 268899999999 999999998888888899999999999999
Q ss_pred HHHHHcCCCCcceeecCCCCC-ChhhHHHHHhhcCCcE
Q 004057 156 YIKQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFDS 192 (776)
Q Consensus 156 ~l~~~fG~~~~~~w~~D~FG~-s~~~p~il~~~~G~~~ 192 (776)
++.+.+|..++ +|.+ |||. +..+-++++ ++||++
T Consensus 88 ~l~~~~g~~~~-~f~~-P~g~~~~~~~~~l~-~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGRPPK-GFRY-PFGSYDDNTLQALR-EAGYKY 122 (123)
T ss_dssp HHHHHHSSEES-EEE--GGGEECHHHHHHHH-HTT-EE
T ss_pred HHHHHhCCCCc-EEEC-CCCCCCHHHHHHHH-HcCCCc
Confidence 99999999444 4554 8885 777889997 999987
No 15
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.37 Score=56.47 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=79.2
Q ss_pred EEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCC----CHHHHHHHHHHHHHHHHHHcCCCCccee
Q 004057 94 FVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATT----HYVDMIDQTTLGHHYIKQHFNKTPKAGW 169 (776)
Q Consensus 94 F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~----~~es~irql~~G~~~l~~~fG~~~~~~w 169 (776)
|++++..-+..+-....++..+.+|++++.|+.|++.-++..+=..+. -.+++++|+..+....++-||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 888773344456666688999999999999999999999954433222 2358999999999999999999999999
Q ss_pred ecCCCCCChhhHHHHHhhcCCcE
Q 004057 170 QIDPFGHSAVQAYLLGVELGFDS 192 (776)
Q Consensus 170 ~~D~FG~s~~~p~il~~~~G~~~ 192 (776)
.+ -+=.+.++..++. .+|+..
T Consensus 242 ~t-El~y~~~i~~~~~-e~G~~~ 262 (615)
T COG1449 242 NT-ELAYNDQILEYFE-ESGFSW 262 (615)
T ss_pred Ch-hhhccHHHHHHHH-HcCCcc
Confidence 98 4578889999997 999996
No 16
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=95.40 E-value=1.6 Score=46.65 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCC-CCcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHH
Q 004057 75 VENVLDSVVEALRRDP-NRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLG 153 (776)
Q Consensus 75 v~~~l~~vl~~l~~~p-~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G 153 (776)
.+.-+-.++++|+++- ..+|...+. ..+.+|+ .+|+++++| .||.+=||...+...-+.+...++|..+
T Consensus 75 ~rvG~~RiLdlL~~~gv~aTffv~g~------~~e~~P~---~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s 144 (297)
T TIGR03212 75 SRAGFWRLLRLFTERGIPVTVFGVAM------ALARNPE---AVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEA 144 (297)
T ss_pred chhCHHHHHHHHHHcCCCEEEEeEHH------HHHHCHH---HHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHH
Confidence 4556778999999874 344655533 4456775 566667899 8988889976666666888899999999
Q ss_pred HHHHHHHcCCCCcceeecCCCCCChhhHHHHHhh-cCCcEEEEeecc
Q 004057 154 HHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVE-LGFDSVHFARID 199 (776)
Q Consensus 154 ~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~-~G~~~~v~~R~~ 199 (776)
++-+++..|.+| .||.. -.+|..++.||+ + .||.|..-+..+
T Consensus 145 ~~~i~~~tG~~P-~G~~~--~~~s~~T~~LL~-e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 145 IRLHTEVTGERP-LGWYT--GRTSPNTRRLVA-EEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHHHhCCCC-ceEEC--CCCChhHHHHHH-HhcCceEeCchhhc
Confidence 998877778765 46753 368999999997 8 999987765543
No 17
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=94.60 E-value=0.31 Score=48.43 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCC-CcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHH
Q 004057 80 DSVVEALRRDPN-RKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIK 158 (776)
Q Consensus 80 ~~vl~~l~~~p~-~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~ 158 (776)
..+++.|+++.- .+|...+. | .+.+| +.+++++++|- ||-+-+|.-++..-.+.+.+.+++..+.+.++
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~-----~-~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS-----W-AERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH-----H-HHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 456777877742 34554442 2 22355 56888899995 88999998877777789999999999999999
Q ss_pred HHcCCCCcceeecCCCC-CChhhHHHHHhhcCCcEE
Q 004057 159 QHFNKTPKAGWQIDPFG-HSAVQAYLLGVELGFDSV 193 (776)
Q Consensus 159 ~~fG~~~~~~w~~D~FG-~s~~~p~il~~~~G~~~~ 193 (776)
+..|..|+. | -=|+| ++..+.++++ +.|++.+
T Consensus 92 ~~~g~~~~~-f-r~P~G~~~~~~~~~l~-~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPTL-F-RPPSGAFNKAVLKAAE-SLGYTVV 124 (191)
T ss_pred HHhCCCCCE-E-ECCCcCCCHHHHHHHH-HcCCeEE
Confidence 999988763 4 34777 5777788887 8998843
No 18
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=94.07 E-value=0.38 Score=49.21 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=76.3
Q ss_pred HHHHHHHHcCC-CCcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHH
Q 004057 80 DSVVEALRRDP-NRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIK 158 (776)
Q Consensus 80 ~~vl~~l~~~p-~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~ 158 (776)
..+++.|+++- ..+|.+.+. |. +.+| +.+++++++|- ||-+-+|.-++-...+.+.+.++|....+.+.
T Consensus 53 ~~lL~~L~~~~vkATFFv~G~-----~~-~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~ 122 (224)
T TIGR02884 53 PKILDVLKEKKVPAAFFVTGH-----YI-KTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFK 122 (224)
T ss_pred HHHHHHHHHcCCCeEEEeech-----hh-HHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHH
Confidence 35777888774 344655543 22 3355 67889999995 67788998777777789999999999999999
Q ss_pred HHcCCC-CcceeecCCCC-CChhhHHHHHhhcCCcEE
Q 004057 159 QHFNKT-PKAGWQIDPFG-HSAVQAYLLGVELGFDSV 193 (776)
Q Consensus 159 ~~fG~~-~~~~w~~D~FG-~s~~~p~il~~~~G~~~~ 193 (776)
+..|.. ++ |.-=|+| ++..+.++++ ++|+..+
T Consensus 123 ~~~G~~~~~--~fR~P~G~~~~~~~~~l~-~~Gy~~v 156 (224)
T TIGR02884 123 KVTGQKEMK--YFRPPRGVFSERTLAYTK-ELGYYTV 156 (224)
T ss_pred HHhCCCCCC--EEeCCCCCcCHHHHHHHH-HcCCcEE
Confidence 998987 44 5556899 5778889997 9999853
No 19
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=93.68 E-value=0.6 Score=49.01 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHcCC-CCcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHH
Q 004057 74 CVENVLDSVVEALRRDP-NRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTL 152 (776)
Q Consensus 74 ~v~~~l~~vl~~l~~~p-~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~ 152 (776)
++...+..++++|+++- ..+|...+ |+.+.+| +.+++++++| .||.+=||...+-...+.+.+..+|..
T Consensus 25 rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~ 94 (265)
T TIGR03006 25 RVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRR 94 (265)
T ss_pred hHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHH
Confidence 67778999999999874 34555543 3445566 4588899999 698888997666666688999999999
Q ss_pred HHHHHHHHcCCCCcceeecCCCCCC---hhhHHHHHhhcCCcEEEEe
Q 004057 153 GHHYIKQHFNKTPKAGWQIDPFGHS---AVQAYLLGVELGFDSVHFA 196 (776)
Q Consensus 153 G~~~l~~~fG~~~~~~w~~D~FG~s---~~~p~il~~~~G~~~~v~~ 196 (776)
..+.|++..|..++ +|.+=.+..+ ....++|+ ++||.+..-.
T Consensus 95 s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL~-e~Gy~YdsS~ 139 (265)
T TIGR03006 95 SKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVLA-EAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHHH-HCCCEEEEee
Confidence 99988888888766 5654333233 33468997 9999987665
No 20
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=92.25 E-value=1.3 Score=46.57 Aligned_cols=102 Identities=20% Similarity=0.365 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCC-CCcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHH
Q 004057 78 VLDSVVEALRRDP-NRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHY 156 (776)
Q Consensus 78 ~l~~vl~~l~~~p-~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~ 156 (776)
....+++.|+++- ..+|...+. |. +.+| +.+|+++++|. ||-+=+|.-++....+.+.+.++|..+.+.
T Consensus 99 ~t~~iL~iLkk~~vkATFFv~G~-----~i-~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~ 168 (268)
T TIGR02873 99 YLPEILQILKKHDVKATFFLEGK-----WV-KENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEI 168 (268)
T ss_pred hHHHHHHHHHHCCCCEEEEeehH-----hh-hHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHH
Confidence 3446788888775 345666543 32 3355 45778889995 788899988888778899999999999999
Q ss_pred HHHHcCCCCcceeecCCCCC-ChhhHHHHHhhcCCcE
Q 004057 157 IKQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFDS 192 (776)
Q Consensus 157 l~~~fG~~~~~~w~~D~FG~-s~~~p~il~~~~G~~~ 192 (776)
+.+..|..|+ |.-=|+|. +..+.++++ .+|+..
T Consensus 169 i~~~~G~~p~--~fRpP~G~~n~~~~~~l~-~~G~~~ 202 (268)
T TIGR02873 169 IEATIGVTPK--WFAPPSGSFNDNVVQIAA-DLQMGT 202 (268)
T ss_pred HHHHhCCCCC--EEECCCCCCCHHHHHHHH-HCCCeE
Confidence 9999998877 56568885 677888887 889864
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=89.23 E-value=15 Score=43.56 Aligned_cols=80 Identities=21% Similarity=0.374 Sum_probs=60.2
Q ss_pred HHHHHHHHcCcEEEEcceeeeeccc--------------------CCCH-------HHHHHHHHHHHHHHHHHcCCCCcc
Q 004057 115 EQVRKLVDASQLEFVNGGWCMHDEA--------------------TTHY-------VDMIDQTTLGHHYIKQHFNKTPKA 167 (776)
Q Consensus 115 ~~vk~lv~~Grle~v~G~wv~~De~--------------------~~~~-------es~irql~~G~~~l~~~fG~~~~~ 167 (776)
+.+|+++++|-+||-+=+|..+... ...+ +.+.+.|..+.+.|++..|..|+.
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 6899999999999777777544211 0112 225678999999999999998885
Q ss_pred eeecCCCC-CChhhHHHHHhhcCCcEEEEee
Q 004057 168 GWQIDPFG-HSAVQAYLLGVELGFDSVHFAR 197 (776)
Q Consensus 168 ~w~~D~FG-~s~~~p~il~~~~G~~~~v~~R 197 (776)
..=||| ++.....+++ ++|++.++..+
T Consensus 248 --FayPyG~~n~~~~~iak-eaGY~~afT~~ 275 (671)
T PRK14582 248 --WVWPYGEANGIALEELK-KLGYDMAFTLE 275 (671)
T ss_pred --EecCCCCCCHHHHHHHH-HCCCeEEEEeC
Confidence 455899 5777889997 99999888754
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=86.60 E-value=4 Score=48.29 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCcEEEEcceeeeeccc--------------------CCCHH-------HHHHHHHHHHHHHHHHcCCCCc
Q 004057 114 QEQVRKLVDASQLEFVNGGWCMHDEA--------------------TTHYV-------DMIDQTTLGHHYIKQHFNKTPK 166 (776)
Q Consensus 114 ~~~vk~lv~~Grle~v~G~wv~~De~--------------------~~~~e-------s~irql~~G~~~l~~~fG~~~~ 166 (776)
.+.+|+++++|-+||-+=+|..+... ...+| .+-+.+....+.+++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 36899999999999888887655311 11233 2556678888889999999888
Q ss_pred ceeecCCCC-CChhhHHHHHhhcCCcEEEEeec
Q 004057 167 AGWQIDPFG-HSAVQAYLLGVELGFDSVHFARI 198 (776)
Q Consensus 167 ~~w~~D~FG-~s~~~p~il~~~~G~~~~v~~R~ 198 (776)
. ..=||| ++...-++++ ++|++.++..+.
T Consensus 247 ~--FayPyG~yn~~~~~iak-~aGy~~afTt~~ 276 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNILR-QHGYQLAMTLDP 276 (672)
T ss_pred E--EEcCCCCcCHHHHHHHH-HCCCcEEEECCC
Confidence 4 445899 5888899998 999999887653
No 23
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=81.72 E-value=15 Score=34.79 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCceEec-CCeEEEEEECCCCceEEEEecCCceEEeeeeeEEEEeeccCCCCccceeEecCCCcceecCCCccEEEEecC
Q 004057 598 DKTVEVG-PGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGP 676 (776)
Q Consensus 598 ~~~~~le-N~~~~v~~~~~~G~i~sl~dk~~g~~~~~~~~~~~Y~~~~~~~~~gaY~f~p~~~~~~~~~~~~~i~i~~Gp 676 (776)
++...|+ ++.|+|.++..++.+. |++|++|....+-.+=++.. +++...+|+|.-+. .+.+....+|.|..=|
T Consensus 7 dgkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~---~Gdg~~~fDFk~~~--tf~L~DGTKItV~T~p 80 (171)
T PF07481_consen 7 DGKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDA---DGDGKTDFDFKGDM--TFQLDDGTKITVDTVP 80 (171)
T ss_pred CCeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCcccc---CCCcccceeecCce--EEEeCCCCEEEEeeee
Confidence 3456677 8889999996578887 99999998877544433322 13344478887543 3556556666664333
Q ss_pred cEEEEEEEecceEEEEEEEecCCCceEEE
Q 004057 677 MVDEVHQQFNSWIYQVTRLYIDKEHAEVE 705 (776)
Q Consensus 677 l~~~i~~~~~~~i~q~irLy~~~~~ie~~ 705 (776)
.-. +..+...+.+.++...+.++
T Consensus 81 ~gn------g~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 81 WGN------GMTYASKLTITNGDNAWQVE 103 (171)
T ss_pred cCC------CcEEeeeEEEEcCCceEEEe
Confidence 221 12344455566666666554
No 24
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=80.51 E-value=86 Score=33.50 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=59.0
Q ss_pred HHHHHHHHcCcEEEEcceeeee----cccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCChhhHHHHHhhcCC
Q 004057 115 EQVRKLVDASQLEFVNGGWCMH----DEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 190 (776)
Q Consensus 115 ~~vk~lv~~Grle~v~G~wv~~----De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~s~~~p~il~~~~G~ 190 (776)
+.+|+.+++ -|+-+=||.-. ....-+.+.+.++|..+.+-+++..|..|+ +|.+=.+-.+..+..++. ++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll~-e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAKE-AFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHHH-HcCC
Confidence 346666666 89888888544 234457788999999999988888887754 566655556788899997 9999
Q ss_pred cEEEEeec
Q 004057 191 DSVHFARI 198 (776)
Q Consensus 191 ~~~v~~R~ 198 (776)
.|.--.|.
T Consensus 168 ~Y~Ss~~~ 175 (296)
T PRK15394 168 RYNSDCRG 175 (296)
T ss_pred eeecCCCC
Confidence 99754443
No 25
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=53.17 E-value=15 Score=29.01 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCcEEEEccee
Q 004057 112 EIQEQVRKLVDASQLEFVNGGW 133 (776)
Q Consensus 112 ~~~~~vk~lv~~Grle~v~G~w 133 (776)
+.++-+-++|++|+++++||-|
T Consensus 37 eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 37 ELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHCCcEEecCCEE
Confidence 4555677899999999998877
No 26
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=49.70 E-value=1.7e+02 Score=32.13 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.8
Q ss_pred CceEecCCeEEEEEECCCCceEEEEecC
Q 004057 599 KTVEVGPGNLKMSFSRTTGQLKRMYNSR 626 (776)
Q Consensus 599 ~~~~leN~~~~v~~~~~~G~i~sl~dk~ 626 (776)
..++|+|+.++++|+...|.|.++.-|+
T Consensus 74 ~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 74 KRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CeEEEECCeEEEEEeCCCceeeeecccc
Confidence 4688999999999997778999887653
No 27
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=48.19 E-value=1e+02 Score=32.16 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEecCCeEEEEEECCCCceEEEEec
Q 004057 601 VEVGPGNLKMSFSRTTGQLKRMYNS 625 (776)
Q Consensus 601 ~~leN~~~~v~~~~~~G~i~sl~dk 625 (776)
++|||+.++++|+...|.|.++.-|
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk 26 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELK 26 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCeEEEEEcC
Confidence 5799999999999889999998765
No 28
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=42.67 E-value=2e+02 Score=29.29 Aligned_cols=115 Identities=16% Similarity=0.256 Sum_probs=78.9
Q ss_pred CccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCC-CCcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcc
Q 004057 53 VGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDP-NRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNG 131 (776)
Q Consensus 53 ~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p-~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G 131 (776)
.--..|||+.+.. .....+++.|+++- ..+|...+ .+.+.+|+..+++.+ +|.- +-.-
T Consensus 65 k~v~lTFDDg~~~-----------~~~~~il~iL~k~~i~ATfFv~g------~~i~~~p~~~~~~~~---~Ghe-ig~H 123 (267)
T COG0726 65 KAVALTFDDGPLD-----------GNTPRILPLLKKYGIKATFFVVG------SWIERNPDLVKRIAE---AGHE-IGNH 123 (267)
T ss_pred CeEEEEeecCCCC-----------CCcHHHHHHHHHcCCceEEEEeh------HhhHHCHHHHHHHHh---ccCe-ehhC
Confidence 3345578877751 16778888898874 24566655 344557755555444 6664 4567
Q ss_pred eeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCC-ChhhHHHHHhhcCCc
Q 004057 132 GWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGH-SAVQAYLLGVELGFD 191 (776)
Q Consensus 132 ~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG~-s~~~p~il~~~~G~~ 191 (776)
+|.-.+..-.+.+.+..++...+..+.+..|..|+ +.--|.|. +...-.+.+ ..|+.
T Consensus 124 ~~~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~~--~~r~p~g~~~~~~~~~~~-~~g~~ 181 (267)
T COG0726 124 GYDHPDLQDLSLEELGAEIARAHDILKKITGGRPR--GFRPPYGSYNESSLALAR-RLGYR 181 (267)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc--eEECCCCccCHHHHHHHH-hCCCc
Confidence 77777777778888888999999999999999833 44456664 466677776 88886
No 29
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=39.94 E-value=44 Score=31.23 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhcChHHHHHHHHHHHcCcEEEEcce
Q 004057 74 CVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGG 132 (776)
Q Consensus 74 ~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv~~Grle~v~G~ 132 (776)
....-|..|-+.|.++|.+.-+..+++ +..--..+.|.++|++|||++...+
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~-------e~tgVs~~~I~~~IreGRL~~~~~~ 78 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIV-------EETGVSEKLILKFIREGRLQLKHFP 78 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH-------HHHCcCHHHHHHHHHcCCeeccCCC
Confidence 556788899999999999665544332 2223344789999999999987543
No 30
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=39.00 E-value=3.7e+02 Score=28.33 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=54.4
Q ss_pred ecCCeEEEEEECCCCceEEEEecCCceEEee-eeeEEEEeeccCCCCcccee-----EecCCCcceecCCCccEEE--Ee
Q 004057 603 VGPGNLKMSFSRTTGQLKRMYNSRTGVDVPI-QQSFLWYGSMVDTQSSGAYI-----FRPNGAQPNVVSRSVPIKI--IR 674 (776)
Q Consensus 603 leN~~~~v~~~~~~G~i~sl~dk~~g~~~~~-~~~~~~Y~~~~~~~~~gaY~-----f~p~~~~~~~~~~~~~i~i--~~ 674 (776)
|.++-.++.||..+|.|+|+.. .|+++.. ...+.++....|.|.+.... +...+-.... .....+.+ ..
T Consensus 2 V~g~~f~~~Fdk~~G~l~s~~~--~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~ag~~~~~-~~~~~~~~~~~~ 78 (276)
T PF02929_consen 2 VSGKDFSYVFDKKTGTLTSYKY--NGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDAGLDRLV-TRVRSVKVEESD 78 (276)
T ss_dssp EEETTEEEEEETTTTCEEEEEE--TTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHTTTTCEE-EEEEEEEEEEEE
T ss_pred CccCCEEEEEECCCCeEEEEEE--CCEEeecCCCcccEEeCCCCCccccccchhHHHHHHcCcccee-eEEeEEEEEecC
Confidence 5667789999999999999885 4677664 44567777644444443332 2222211110 01112222 33
Q ss_pred cCcEEEEEEEe--c-----ceEEEEEEEecCCCceEEEEEEccc
Q 004057 675 GPMVDEVHQQF--N-----SWIYQVTRLYIDKEHAEVEYTIGPI 711 (776)
Q Consensus 675 Gpl~~~i~~~~--~-----~~i~q~irLy~~~~~ie~~~~V~~~ 711 (776)
+.+...++..+ . ..++++.+++.+ ..|++++++.+.
T Consensus 79 ~~~~v~v~~~~~~~~~~~~~~~~~~y~i~~d-G~i~v~~~~~~~ 121 (276)
T PF02929_consen 79 GDVAVTVTARYAAPNKSWNFEVTITYTIYAD-GTIKVDMTFEPS 121 (276)
T ss_dssp SESEEEEEEEEEETTCCEEEEEEEEEEEETT-SEEEEEEEEEEE
T ss_pred CCceEEEEEEEeCCCcceEEEEEEEEEEcCC-CEEEEEEEEEeC
Confidence 44444444433 1 135566777764 468888877655
No 31
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=35.75 E-value=62 Score=28.98 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=43.6
Q ss_pred EEEEEeccccCCccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhcChHHHHHHHHHH
Q 004057 42 NVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLV 121 (776)
Q Consensus 42 ~v~~v~HsH~D~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~p~~~~~vk~lv 121 (776)
+|.=++=.|.|.--+.....-+. ++.+++-.++..+.... .+||.. -|+++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~~---------~~arvIg~vl~~~~~~i------------~D~f~~------~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEFQ---------KAARVIGEVLGHSDQGI------------GDWFLE------YRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCcccc---------HHHHHHHHHHHhcCcCC------------ChHHHH------HHHHHHH
Confidence 35555667777777764444332 57788888887642221 133332 6899999
Q ss_pred HcCcEEEEcceeeee
Q 004057 122 DASQLEFVNGGWCMH 136 (776)
Q Consensus 122 ~~Grle~v~G~wv~~ 136 (776)
++|+||+.|-+-.|.
T Consensus 93 ~~G~le~~g~~~~mr 107 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMR 107 (111)
T ss_pred HCCCEEEecCCCccc
Confidence 999999886554444
No 32
>PRK10148 hypothetical protein; Provisional
Probab=30.35 E-value=19 Score=34.14 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.8
Q ss_pred CcceeecCCCCCChhhHH
Q 004057 165 PKAGWQIDPFGHSAVQAY 182 (776)
Q Consensus 165 ~~~~w~~D~FG~s~~~p~ 182 (776)
++.||..|+||++|++-.
T Consensus 123 ~~~g~v~D~fGi~W~l~~ 140 (147)
T PRK10148 123 HGFGKVTDKFGVPWMINV 140 (147)
T ss_pred hccEEEECCCCCEEEEEe
Confidence 367899999999998643
No 33
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=29.77 E-value=1.7e+02 Score=32.53 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=66.3
Q ss_pred HHHhhcChHHHHHHHHHHHcCcEEEEcceeeeecccCCCHHHHHHHHHHHHHHHHHHcCC-CCcceeecCCCCCChhhHH
Q 004057 104 RWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNK-TPKAGWQIDPFGHSAVQAY 182 (776)
Q Consensus 104 ~w~~~~~p~~~~~vk~lv~~Grle~v~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~-~~~~~w~~D~FG~s~~~p~ 182 (776)
+-..+++|.+.+.-.+|=++|+|. +|....+.+.+.+|+.. +++.++. ..++....=.+||+..+..
T Consensus 4 ~~~~~~n~~~~~~a~~~~~~g~~~--------~~~yvIDl~~I~~N~~~----l~~~~~~~~~~l~~vvKAna~~~~ia~ 71 (382)
T cd06811 4 EALLKRNPALIEAALTLHQSGAIP--------PDTYVIDLDQIEENARL----LAETAEKYGIELYFMTKQFGRNPFLAR 71 (382)
T ss_pred HHHhhhCHHHHHHHHHHHHcCCCC--------CCEEEecHHHHHHHHHH----HHHHHhhCCCEEEEEEccCCCCHHHHH
Confidence 556789999999999999999993 67777777777777654 4455543 3567777888888888999
Q ss_pred HHHhhcCCcEEEEeecchh
Q 004057 183 LLGVELGFDSVHFARIDYQ 201 (776)
Q Consensus 183 il~~~~G~~~~v~~R~~~~ 201 (776)
++. +.|++++.+..+...
T Consensus 72 ~l~-~~G~~g~~vas~~Ea 89 (382)
T cd06811 72 ALL-EAGIPGAVAVDFKEA 89 (382)
T ss_pred HHH-HcCCCeEeEecHHHH
Confidence 997 999999998877643
No 34
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=28.30 E-value=83 Score=32.16 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhhcChH-------HHHHHHHHHHcCcEEEEcce
Q 004057 76 ENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPE-------IQEQVRKLVDASQLEFVNGG 132 (776)
Q Consensus 76 ~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~p~-------~~~~vk~lv~~Grle~v~G~ 132 (776)
+-=+-.++.-+++=|...|+++++.-|+..+...+|. .|+++..|-..|-|||++-|
T Consensus 186 rGWlldi~~cid~i~~~~FtL~diY~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG 249 (254)
T PF06044_consen 186 RGWLLDIMKCIDKIPKNEFTLDDIYAFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRG 249 (254)
T ss_dssp HHHHHHHHHHHHHS-SSEEEHHHHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STT
T ss_pred cchHHHHHHHHHhcCccceeHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCC
Confidence 3445567777778888889999998888888888884 45666667789999999855
No 35
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=27.79 E-value=1.1e+02 Score=36.38 Aligned_cols=111 Identities=15% Similarity=0.274 Sum_probs=70.8
Q ss_pred ccchhhhhheecCCccchhHHHHHHHHHHHHHHHc--CCCCcEEEehhHH--HHHHHhhcChHHHHHHHHHHHcCcEEEE
Q 004057 54 GWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRR--DPNRKFVFAEMAF--FHRWWVGQSPEIQEQVRKLVDASQLEFV 129 (776)
Q Consensus 54 gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~--~p~~~F~~~e~~~--~~~w~~~~~p~~~~~vk~lv~~Grle~v 129 (776)
.=|..||+||. ..+...-...-+| +|.|.|..++..| +.-| . ..++--.-++.|+.-|-
T Consensus 54 ~~L~~FE~yy~-----------~TL~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw-~-sa~dFgt~~hTLigY~v---- 116 (682)
T PHA03393 54 DDLDTFERYYK-----------NTLTQKFLQKAEKIANPTRQFSDDDNIFDGLSPW-T-SANDFGTLCHTLIGYCV---- 116 (682)
T ss_pred hHHHHHHHHHH-----------HHHHHHHHhhhhhhcCCcccccCCCceecCCccc-c-CHHHHHHHHHHHHhheE----
Confidence 45889999996 2222233344444 7887788766655 4334 1 12333334555554432
Q ss_pred cceeeeecccCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCC-------CChhhHHHHH
Q 004057 130 NGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFG-------HSAVQAYLLG 185 (776)
Q Consensus 130 ~G~wv~~De~~~~~es~irql~~G~~~l~~~fG~~~~~~w~~D~FG-------~s~~~p~il~ 185 (776)
-|..++.++-....+..+|..|.+++.+++...+. ++-.|+| ++-+||..|.
T Consensus 117 --ry~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p--~~qaPWG~~~dWy~FsItmPE~~m 175 (682)
T PHA03393 117 --RYNNPNDALYQDPELAYNLINALRLIYSHLPDPAP--HQQAPWGPVADWYHFSITMPECFM 175 (682)
T ss_pred --EecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCc--ccCCCCCCcCceeeEEccHHHHHH
Confidence 24556666777777999999999999999998774 2445555 6778888763
No 36
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=24.46 E-value=1.6e+02 Score=28.11 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=43.1
Q ss_pred HHhhcChHHHHHHHHHHHcCcEEEEc-ceeee-ecccCCCHHHHHHHHHHHHHHHHHHcCCC
Q 004057 105 WWVGQSPEIQEQVRKLVDASQLEFVN-GGWCM-HDEATTHYVDMIDQTTLGHHYIKQHFNKT 164 (776)
Q Consensus 105 w~~~~~p~~~~~vk~lv~~Grle~v~-G~wv~-~De~~~~~es~irql~~G~~~l~~~fG~~ 164 (776)
.|....++.++.|++.++.|++++.. =-+.. ....+.=-+.+++++....+.+++.+|..
T Consensus 40 ~l~~lE~~ir~~i~~~l~RGkV~v~i~~~~~~~~~~~~~in~~l~~~y~~~l~~l~~~~~~~ 101 (159)
T PF03755_consen 40 ELSSLEPEIRKLIRKKLSRGKVEVSIRVERSSESAVELRINEELAKAYYEALKELAEELGLA 101 (159)
T ss_pred HHHHHHHHHHHHHHHhcccceEEEEEEEEECcccCCCcccCHHHHHHHHHHHHHHHHHcCCC
Confidence 44455778999999999999999641 11111 22333335678999999999999999874
No 37
>PF10102 DUF2341: Domain of unknown function (DUF2341); InterPro: IPR018765 This domain of unknown function is found in various bacterial proteins, including MotA/TolQ/ExbB proton channels and other transport proteins.
Probab=24.36 E-value=3.7e+02 Score=23.06 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=32.9
Q ss_pred CcEEEEcCCCCEEeEEEEeccccccccccchhhhccCCCCCCCCeEEEEEEE-eeCCCceEEEEEEecCC
Q 004057 513 ANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQV-TVPPLGWNTYFISRAAG 581 (776)
Q Consensus 513 ~~~~v~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~-~vPplG~~~~~i~~~~~ 581 (776)
..+++.|.+|.+||+.|..-... .....|.+.+ .+|+ +-.++.|--+.+
T Consensus 4 ~DIRf~d~~~~~L~ywIE~wd~~-------------------~~~A~iWVkvp~i~~-~~~~i~lyyGn~ 53 (89)
T PF10102_consen 4 SDIRFYDSDGTPLPYWIESWDPT-------------------NEQALIWVKVPSIPA-GSTTIYLYYGNP 53 (89)
T ss_pred ccEEEEeCCCCEeEEEEEECCCC-------------------CCeEEEEEECCCCCC-CCcEEEEEECCC
Confidence 56788899999999999774221 1223455555 4666 777777776654
No 38
>PRK01318 membrane protein insertase; Provisional
Probab=23.06 E-value=7.9e+02 Score=28.57 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=23.3
Q ss_pred ceEecCCeEEEEEECCCCceEEEEecC
Q 004057 600 TVEVGPGNLKMSFSRTTGQLKRMYNSR 626 (776)
Q Consensus 600 ~~~leN~~~~v~~~~~~G~i~sl~dk~ 626 (776)
.+.|+|+.++++|+...|.|.++.-|+
T Consensus 40 ~i~v~td~~~~~is~~Gg~i~~~~Lk~ 66 (521)
T PRK01318 40 RITVETDVLRLSIDTKGGRIDDLLLKK 66 (521)
T ss_pred EEEEEcCcEEEEEECCCCeeeeeeccC
Confidence 788999999999997778999887653
No 39
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=20.91 E-value=2.4e+02 Score=26.10 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=56.5
Q ss_pred CccchhhhhheecCCccchhHHHHHHHHHHHHHHHcCCCCcEEEehhHHHHHHHhh-cChHHHHHHHHHHHcCcEEEEcc
Q 004057 53 VGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVG-QSPEIQEQVRKLVDASQLEFVNG 131 (776)
Q Consensus 53 ~gWl~t~~~y~~~~~~~i~~~~v~~~l~~vl~~l~~~p~~~F~~~e~~~~~~w~~~-~~p~~~~~vk~lv~~Grle~v~G 131 (776)
.||-|..=-=....++.|-.-.-....+.+++.|.+-.. ++.-+..|..+ -+|++..++++.|++.|=-+.|+
T Consensus 11 ~gWKW~YLvkKhreGE~ITry~e~S~~~~aV~~L~~le~------~P~~v~~WI~~hm~p~l~nklkQaIRArRKRhFNA 84 (150)
T PRK05097 11 SGWKWKYLVKKHREGELITRYIEASAAQEAVDELLKLEN------EPVKVLEWIDKHMNPELVNRMKQTIRARRKRHFNA 84 (150)
T ss_pred cCcchHHHHHHhccccchHHHHHhhHHHHHHHHHHHhcc------CcHHHHHHHHHhcCHHHHHHHHHHHHHHHHccCCc
Confidence 466664422222234455322223344555555543322 34445688866 69999999999998877655666
Q ss_pred eeeeecccCCCHHHHHHHHHHHHHHHHHHcCC
Q 004057 132 GWCMHDEATTHYVDMIDQTTLGHHYIKQHFNK 163 (776)
Q Consensus 132 ~wv~~De~~~~~es~irql~~G~~~l~~~fG~ 163 (776)
.=.-+----.+-|-.+-+-+.+ ++++.|.
T Consensus 85 E~qhTrKKSIDLey~vW~rLs~---~a~~~~~ 113 (150)
T PRK05097 85 EHQHTRKKSIDLEYRVWQRLAG---LAQRRGK 113 (150)
T ss_pred ccccccccCccccHHHHHHHHH---HHHHcCC
Confidence 6544444444555555554444 3445554
No 40
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=20.85 E-value=4.3e+02 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCceEecCCeEEEEEECCCCceEEEE
Q 004057 598 DKTVEVGPGNLKMSFSRTTGQLKRMY 623 (776)
Q Consensus 598 ~~~~~leN~~~~v~~~~~~G~i~sl~ 623 (776)
....+|+|+.++|+|+...|.|++|.
T Consensus 15 ~~~VvldNGiVqVtls~p~G~VtgIk 40 (203)
T PF06045_consen 15 GRQVVLDNGIVQVTLSKPGGIVTGIK 40 (203)
T ss_pred CCEEEEECCEEEEEEcCCCceEEEEE
Confidence 44589999999999996678888875
Done!