Query 004058
Match_columns 776
No_of_seqs 373 out of 2896
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 16:48:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 4E-123 8E-128 938.7 58.0 625 1-752 1-644 (663)
2 KOG0104 Molecular chaperones G 100.0 5E-105 1E-109 862.4 62.9 750 1-774 1-760 (902)
3 KOG0103 Molecular chaperones H 100.0 5E-101 1E-105 831.6 56.4 661 24-773 1-668 (727)
4 PTZ00009 heat shock 70 kDa pro 100.0 5.2E-99 1E-103 878.2 71.4 604 22-752 2-615 (653)
5 PRK13410 molecular chaperone D 100.0 5.2E-98 1E-102 865.5 69.2 607 24-765 2-619 (668)
6 PRK13411 molecular chaperone D 100.0 7E-97 2E-101 859.1 71.8 591 24-751 2-601 (653)
7 PTZ00400 DnaK-type molecular c 100.0 8.8E-97 2E-101 858.5 70.9 592 21-751 38-638 (663)
8 PRK00290 dnaK molecular chaper 100.0 6.7E-95 1.4E-99 844.2 72.3 587 24-751 2-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 9.4E-95 2E-99 841.5 71.3 591 23-753 38-638 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 1.1E-94 2.4E-99 833.6 70.5 591 23-750 26-624 (657)
11 TIGR02350 prok_dnaK chaperone 100.0 1.2E-93 2.6E-98 831.4 70.5 584 25-749 1-593 (595)
12 CHL00094 dnaK heat shock prote 100.0 1.7E-93 3.6E-98 829.6 70.5 588 24-751 2-599 (621)
13 TIGR01991 HscA Fe-S protein as 100.0 5.6E-91 1.2E-95 803.2 71.3 579 26-750 1-584 (599)
14 KOG0101 Molecular chaperones H 100.0 3.1E-93 6.7E-98 782.2 48.0 603 21-752 4-615 (620)
15 PRK05183 hscA chaperone protei 100.0 1.3E-89 2.7E-94 793.3 69.8 578 24-750 19-600 (616)
16 PF00012 HSP70: Hsp70 protein; 100.0 2.5E-89 5.5E-94 803.3 62.7 592 26-751 1-602 (602)
17 PRK01433 hscA chaperone protei 100.0 1.1E-84 2.3E-89 745.1 66.2 556 24-750 19-579 (595)
18 KOG0102 Molecular chaperones m 100.0 4.7E-86 1E-90 694.1 44.6 596 21-752 24-628 (640)
19 COG0443 DnaK Molecular chapero 100.0 2.5E-82 5.4E-87 721.2 58.1 570 23-751 4-578 (579)
20 PRK11678 putative chaperone; P 100.0 3.6E-54 7.9E-59 477.0 37.5 346 26-417 2-448 (450)
21 PRK13928 rod shape-determining 100.0 2.3E-37 5E-42 335.6 33.8 307 27-417 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.6E-36 3.5E-41 327.9 34.6 306 25-414 5-324 (335)
23 PRK13927 rod shape-determining 100.0 5.2E-34 1.1E-38 309.8 34.0 308 25-417 6-325 (334)
24 TIGR00904 mreB cell shape dete 100.0 7.8E-34 1.7E-38 307.8 33.5 307 26-416 4-327 (333)
25 PRK13930 rod shape-determining 100.0 8.1E-33 1.7E-37 300.8 33.0 308 26-417 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 3.5E-29 7.6E-34 264.1 26.1 307 25-415 2-320 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 2.1E-28 4.5E-33 250.8 24.6 200 139-412 39-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 2.4E-26 5.2E-31 232.2 28.5 311 24-418 6-333 (342)
29 PRK15080 ethanolamine utilizat 99.9 2.6E-25 5.7E-30 232.0 29.0 202 139-414 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 8.6E-21 1.9E-25 208.9 27.9 195 175-413 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 4E-19 8.6E-24 197.9 31.0 197 177-416 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.7 4E-15 8.7E-20 161.3 28.4 207 164-417 158-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.6 1.9E-14 4.1E-19 158.9 17.0 238 140-416 75-347 (371)
34 PRK13917 plasmid segregation p 99.5 1.1E-12 2.4E-17 142.0 24.1 207 164-419 115-339 (344)
35 COG4820 EutJ Ethanolamine util 99.5 3.7E-14 8E-19 133.2 10.6 195 144-412 76-270 (277)
36 smart00268 ACTIN Actin. ACTIN 99.5 3.6E-13 7.8E-18 148.8 18.2 238 140-416 75-347 (373)
37 PTZ00280 Actin-related protein 99.3 1.4E-10 3E-15 129.6 21.5 226 140-393 82-338 (414)
38 TIGR03739 PRTRC_D PRTRC system 99.3 1.7E-10 3.7E-15 124.3 20.9 208 160-414 101-318 (320)
39 PF00022 Actin: Actin; InterP 99.2 1.6E-10 3.4E-15 128.9 17.1 312 24-416 4-367 (393)
40 TIGR01175 pilM type IV pilus a 99.1 1.6E-08 3.4E-13 110.8 25.2 162 174-394 142-309 (348)
41 PTZ00452 actin; Provisional 99.1 3.2E-09 6.9E-14 116.8 18.5 234 141-415 81-348 (375)
42 PTZ00281 actin; Provisional 99.1 1.9E-09 4.2E-14 118.8 16.8 238 141-416 82-350 (376)
43 PTZ00004 actin-2; Provisional 99.1 2.5E-09 5.4E-14 118.0 17.0 235 140-415 81-351 (378)
44 PTZ00466 actin-like protein; P 99.0 1.1E-08 2.4E-13 112.6 19.4 235 141-415 88-353 (380)
45 PF06406 StbA: StbA protein; 98.9 7.3E-08 1.6E-12 103.7 17.9 174 190-411 141-316 (318)
46 PF11104 PilM_2: Type IV pilus 98.7 3.5E-07 7.6E-12 99.6 16.9 181 175-414 136-339 (340)
47 PRK10719 eutA reactivating fac 98.6 8.9E-07 1.9E-11 96.5 14.5 244 25-380 7-268 (475)
48 COG5277 Actin and related prot 98.6 2.6E-06 5.5E-11 94.6 18.5 192 27-279 9-204 (444)
49 KOG0679 Actin-related protein 98.4 2.2E-05 4.8E-10 82.0 19.6 116 140-279 86-202 (426)
50 COG4972 PilM Tfp pilus assembl 98.4 8.8E-05 1.9E-09 76.7 23.1 160 177-393 151-313 (354)
51 PF07520 SrfB: Virulence facto 98.2 0.0002 4.3E-09 84.6 23.8 274 135-418 416-836 (1002)
52 TIGR03192 benz_CoA_bzdQ benzoy 98.0 0.0011 2.5E-08 69.0 22.0 46 370-416 242-288 (293)
53 TIGR00241 CoA_E_activ CoA-subs 98.0 0.00015 3.4E-09 75.2 14.9 169 193-412 73-247 (248)
54 TIGR02261 benz_CoA_red_D benzo 97.9 0.0047 1E-07 63.6 23.2 45 370-414 214-262 (262)
55 PF08841 DDR: Diol dehydratase 97.8 0.00053 1.2E-08 69.2 15.0 190 185-414 106-329 (332)
56 TIGR03286 methan_mark_15 putat 97.7 0.0031 6.7E-08 68.4 20.0 45 370-415 358-402 (404)
57 KOG0676 Actin and related prot 97.7 0.00041 8.9E-09 74.6 13.1 110 143-278 82-192 (372)
58 PF06277 EutA: Ethanolamine ut 97.6 0.0017 3.6E-08 71.4 15.2 172 25-268 4-178 (473)
59 COG1924 Activator of 2-hydroxy 97.5 0.016 3.5E-07 61.5 21.3 72 340-416 318-390 (396)
60 COG4457 SrfB Uncharacterized p 97.1 0.024 5.2E-07 63.6 18.0 84 330-418 743-848 (1014)
61 KOG0797 Actin-related protein 96.9 0.01 2.2E-07 64.7 12.1 121 135-278 196-322 (618)
62 TIGR02259 benz_CoA_red_A benzo 96.7 0.034 7.4E-07 59.9 14.7 46 369-414 383-432 (432)
63 PF02782 FGGY_C: FGGY family o 96.3 0.0068 1.5E-07 60.5 6.1 75 340-416 121-196 (198)
64 KOG0677 Actin-related protein 96.3 0.12 2.5E-06 51.9 14.3 193 162-391 102-318 (389)
65 PRK13317 pantothenate kinase; 96.2 0.11 2.3E-06 54.7 14.3 49 367-415 222-273 (277)
66 COG1069 AraB Ribulose kinase [ 96.1 0.28 6E-06 54.8 17.5 225 179-421 233-483 (544)
67 PF14574 DUF4445: Domain of un 95.8 0.39 8.5E-06 53.1 17.2 84 329-413 290-374 (412)
68 PRK15027 xylulokinase; Provisi 95.4 0.04 8.7E-07 63.2 8.2 83 334-421 356-439 (484)
69 PLN02669 xylulokinase 95.3 0.057 1.2E-06 62.8 8.8 71 343-416 422-492 (556)
70 TIGR01315 5C_CHO_kinase FGGY-f 95.1 0.066 1.4E-06 62.3 8.8 84 334-419 410-493 (541)
71 PF01968 Hydantoinase_A: Hydan 94.6 0.11 2.3E-06 55.3 8.1 69 342-413 216-284 (290)
72 PF14450 FtsA: Cell division p 94.3 0.16 3.4E-06 46.3 7.2 41 218-269 1-43 (120)
73 TIGR01312 XylB D-xylulose kina 94.2 0.15 3.2E-06 58.5 8.6 52 367-420 390-441 (481)
74 PRK00047 glpK glycerol kinase; 94.1 0.14 2.9E-06 59.1 8.2 52 367-420 403-454 (498)
75 TIGR01311 glycerol_kin glycero 94.0 0.13 2.8E-06 59.2 7.6 52 367-420 399-450 (493)
76 KOG2517 Ribulose kinase and re 93.9 0.61 1.3E-05 52.5 12.3 73 345-422 395-467 (516)
77 PRK04123 ribulokinase; Provisi 93.9 0.14 3E-06 59.8 7.8 51 367-419 438-489 (548)
78 PTZ00294 glycerol kinase-like 93.9 0.16 3.5E-06 58.6 8.2 53 367-421 406-458 (504)
79 TIGR01234 L-ribulokinase L-rib 93.8 0.17 3.7E-06 58.9 8.2 52 367-420 435-487 (536)
80 PRK10331 L-fuculokinase; Provi 93.6 0.18 3.8E-06 57.7 7.8 52 367-420 389-440 (470)
81 PLN02295 glycerol kinase 93.5 0.2 4.4E-06 57.9 8.1 53 367-421 412-464 (512)
82 TIGR02628 fuculo_kin_coli L-fu 93.4 0.19 4.2E-06 57.2 7.7 51 367-419 393-443 (465)
83 KOG2531 Sugar (pentulose and h 93.4 0.27 5.9E-06 53.4 8.0 55 360-416 435-489 (545)
84 PRK10854 exopolyphosphatase; P 93.3 1.6 3.5E-05 50.4 15.0 56 177-234 99-155 (513)
85 TIGR02627 rhamnulo_kin rhamnul 93.3 0.22 4.7E-06 56.7 7.8 52 367-421 387-438 (454)
86 COG4819 EutA Ethanolamine util 93.3 0.45 9.7E-06 49.6 9.1 66 164-234 90-163 (473)
87 TIGR01314 gntK_FGGY gluconate 92.9 0.25 5.5E-06 57.0 7.7 53 367-421 401-453 (505)
88 PRK10640 rhaB rhamnulokinase; 92.4 0.34 7.3E-06 55.4 7.7 52 367-421 375-426 (471)
89 TIGR00555 panK_eukar pantothen 92.3 2 4.4E-05 45.0 12.5 47 366-412 229-278 (279)
90 PRK10939 autoinducer-2 (AI-2) 92.1 0.36 7.8E-06 55.9 7.6 51 367-419 409-459 (520)
91 PTZ00107 hexokinase; Provision 90.5 13 0.00029 42.0 17.6 81 336-418 370-461 (464)
92 PRK09698 D-allose kinase; Prov 90.0 29 0.00064 36.8 21.1 43 187-233 104-146 (302)
93 KOG0681 Actin-related protein 89.9 5.6 0.00012 44.6 13.3 121 140-279 95-216 (645)
94 COG1070 XylB Sugar (pentulose 89.9 1 2.2E-05 52.0 8.4 81 334-418 370-450 (502)
95 PF02541 Ppx-GppA: Ppx/GppA ph 88.8 2 4.3E-05 45.5 9.1 53 180-234 77-130 (285)
96 PRK11031 guanosine pentaphosph 87.5 3.8 8.3E-05 47.1 11.0 56 177-234 94-150 (496)
97 PF07318 DUF1464: Protein of u 86.9 14 0.0003 39.7 13.7 71 346-420 243-319 (343)
98 KOG0680 Actin-related protein 86.6 3.2 7E-05 43.4 8.5 98 162-277 94-198 (400)
99 PF01869 BcrAD_BadFG: BadF/Bad 86.4 2.6 5.6E-05 44.3 8.2 70 342-414 198-271 (271)
100 smart00842 FtsA Cell division 85.7 3.8 8.3E-05 40.3 8.5 38 135-173 42-79 (187)
101 TIGR00744 ROK_glcA_fam ROK fam 85.5 55 0.0012 35.0 21.7 94 137-233 32-140 (318)
102 PRK09585 anmK anhydro-N-acetyl 85.4 7.8 0.00017 42.3 11.3 64 349-416 271-338 (365)
103 KOG0681 Actin-related protein 84.0 1.5 3.2E-05 48.9 5.0 49 368-416 559-614 (645)
104 COG0248 GppA Exopolyphosphatas 83.8 4.4 9.6E-05 46.1 8.9 56 177-234 91-147 (492)
105 COG5026 Hexokinase [Carbohydra 81.9 5.2 0.00011 43.8 8.0 21 23-43 74-94 (466)
106 PF03702 UPF0075: Uncharacteri 81.8 4.8 0.0001 44.0 7.9 70 342-416 262-337 (364)
107 PLN02666 5-oxoprolinase 81.7 14 0.0003 47.2 12.8 76 334-412 454-530 (1275)
108 KOG1385 Nucleoside phosphatase 80.5 6.2 0.00013 42.9 7.9 162 25-234 68-231 (453)
109 COG1548 Predicted transcriptio 78.7 20 0.00043 36.6 10.3 72 146-234 76-148 (330)
110 TIGR03706 exo_poly_only exopol 77.8 9.7 0.00021 40.6 8.7 88 142-234 54-143 (300)
111 PLN02362 hexokinase 76.8 5 0.00011 45.8 6.3 21 24-44 95-115 (509)
112 PLN02405 hexokinase 76.4 7.7 0.00017 44.2 7.7 55 174-233 205-261 (497)
113 PRK14101 bifunctional glucokin 75.5 60 0.0013 38.7 15.3 74 342-415 244-329 (638)
114 PF08735 DUF1786: Putative pyr 75.5 21 0.00046 36.7 9.7 72 158-233 111-184 (254)
115 COG0554 GlpK Glycerol kinase [ 74.4 11 0.00024 42.0 7.9 68 349-421 387-454 (499)
116 COG2377 Predicted molecular ch 74.4 61 0.0013 35.1 13.2 54 364-417 287-344 (371)
117 PRK14878 UGMP family protein; 74.3 1.3E+02 0.0029 32.4 18.1 25 367-391 241-265 (323)
118 COG0145 HyuA N-methylhydantoin 72.9 4.7 0.0001 47.7 5.0 42 191-234 255-296 (674)
119 PF03652 UPF0081: Uncharacteri 72.8 5.7 0.00012 36.9 4.6 21 24-46 1-21 (135)
120 TIGR03281 methan_mark_12 putat 72.2 16 0.00035 38.4 8.0 52 367-421 262-316 (326)
121 PLN02914 hexokinase 72.1 12 0.00027 42.4 7.9 56 175-235 206-263 (490)
122 KOG1369 Hexokinase [Carbohydra 70.5 8.8 0.00019 43.1 6.2 64 168-236 185-251 (474)
123 cd06007 R3H_DEXH_helicase R3H 68.6 14 0.00031 28.8 5.2 29 163-191 16-44 (59)
124 PRK00976 hypothetical protein; 68.3 15 0.00034 39.2 7.2 51 367-420 263-315 (326)
125 PF02543 CmcH_NodU: Carbamoylt 67.7 15 0.00034 40.2 7.4 82 333-419 132-216 (360)
126 TIGR03723 bact_gcp putative gl 67.6 1.8E+02 0.0039 31.2 16.3 44 367-411 259-308 (314)
127 smart00732 YqgFc Likely ribonu 65.8 6.1 0.00013 34.0 3.1 17 25-41 2-18 (99)
128 PLN02596 hexokinase-like 64.6 11 0.00024 42.8 5.6 55 176-235 207-263 (490)
129 KOG2708 Predicted metalloprote 64.2 92 0.002 31.3 10.9 75 333-413 224-301 (336)
130 COG4012 Uncharacterized protei 63.9 36 0.00078 34.9 8.3 92 168-280 186-277 (342)
131 cd02640 R3H_NRF R3H domain of 63.4 22 0.00048 27.8 5.4 41 150-191 5-45 (60)
132 PF00370 FGGY_N: FGGY family o 62.9 8 0.00017 39.8 3.9 18 25-42 1-18 (245)
133 COG0533 QRI7 Metal-dependent p 62.1 73 0.0016 34.3 10.7 54 334-392 229-286 (342)
134 PRK00109 Holliday junction res 61.8 16 0.00034 34.1 5.2 19 23-41 3-21 (138)
135 PRK09557 fructokinase; Reviewe 61.7 50 0.0011 35.1 9.9 44 187-233 96-139 (301)
136 TIGR00329 gcp_kae1 metallohydr 61.2 2.3E+02 0.005 30.2 15.1 37 350-391 246-282 (305)
137 PRK03011 butyrate kinase; Prov 60.4 15 0.00032 40.3 5.5 47 367-413 295-344 (358)
138 PRK09604 UGMP family protein; 59.2 2.6E+02 0.0057 30.2 22.1 47 367-413 254-305 (332)
139 COG4296 Uncharacterized protei 58.4 15 0.00032 33.3 4.0 23 714-736 90-112 (156)
140 TIGR00143 hypF [NiFe] hydrogen 56.9 19 0.00041 43.2 6.0 49 367-415 658-711 (711)
141 COG1940 NagC Transcriptional r 54.8 1.8E+02 0.0039 31.0 12.8 129 19-226 1-143 (314)
142 COG4575 ElaB Uncharacterized c 53.3 1.6E+02 0.0034 25.8 9.5 70 702-774 11-80 (104)
143 TIGR03722 arch_KAE1 universal 52.9 3.2E+02 0.007 29.3 15.8 43 367-409 242-289 (322)
144 PRK10939 autoinducer-2 (AI-2) 50.2 14 0.00031 42.7 3.5 19 24-42 3-21 (520)
145 PF00349 Hexokinase_1: Hexokin 50.1 48 0.001 33.2 6.8 24 213-236 60-83 (206)
146 cd02641 R3H_Smubp-2_like R3H d 49.9 46 0.001 26.0 5.2 40 151-191 6-45 (60)
147 TIGR03123 one_C_unchar_1 proba 49.6 11 0.00023 40.5 2.1 53 334-394 245-301 (318)
148 PRK10331 L-fuculokinase; Provi 49.6 17 0.00036 41.6 3.9 18 25-42 3-20 (470)
149 PTZ00294 glycerol kinase-like 48.3 18 0.00038 41.8 3.9 18 25-42 3-20 (504)
150 COG1070 XylB Sugar (pentulose 47.8 15 0.00032 42.4 3.1 20 23-42 3-22 (502)
151 cd00529 RuvC_resolvase Hollida 47.3 21 0.00047 33.8 3.7 17 26-42 2-18 (154)
152 PF07765 KIP1: KIP1-like prote 47.0 85 0.0018 25.7 6.3 55 716-775 13-72 (74)
153 COG0816 Predicted endonuclease 46.1 17 0.00038 33.9 2.7 18 24-41 2-19 (141)
154 PRK15027 xylulokinase; Provisi 45.5 17 0.00036 41.7 3.1 17 26-42 2-18 (484)
155 PLN02920 pantothenate kinase 1 45.1 90 0.0019 34.4 8.3 50 365-414 295-350 (398)
156 KOG2196 Nuclear porin [Nuclear 44.9 2.1E+02 0.0046 29.0 10.1 43 697-744 209-251 (254)
157 TIGR02628 fuculo_kin_coli L-fu 44.0 19 0.00042 41.0 3.3 18 25-42 2-19 (465)
158 PRK05082 N-acetylmannosamine k 43.1 3.6E+02 0.0078 28.3 12.7 49 367-415 233-287 (291)
159 PF14450 FtsA: Cell division p 42.0 25 0.00054 31.7 3.1 59 142-204 48-119 (120)
160 TIGR01234 L-ribulokinase L-rib 40.7 20 0.00044 41.6 2.9 17 25-41 2-18 (536)
161 cd02646 R3H_G-patch R3H domain 40.7 62 0.0013 25.0 4.7 41 148-191 3-43 (58)
162 PLN02377 3-ketoacyl-CoA syntha 40.6 85 0.0018 36.0 7.7 56 339-394 165-221 (502)
163 TIGR00241 CoA_E_activ CoA-subs 40.4 20 0.00044 37.0 2.5 16 26-41 2-17 (248)
164 PLN02295 glycerol kinase 40.2 24 0.00051 40.9 3.3 18 25-42 1-18 (512)
165 TIGR01314 gntK_FGGY gluconate 40.1 23 0.0005 40.8 3.2 17 26-42 2-18 (505)
166 PTZ00340 O-sialoglycoprotein e 39.6 81 0.0017 34.3 6.9 42 346-392 247-288 (345)
167 TIGR01311 glycerol_kin glycero 39.5 28 0.0006 40.0 3.7 17 25-41 2-18 (493)
168 cd02639 R3H_RRM R3H domain of 38.6 50 0.0011 25.9 3.8 31 162-192 16-46 (60)
169 TIGR01315 5C_CHO_kinase FGGY-f 38.4 25 0.00055 40.9 3.2 17 26-42 2-18 (541)
170 COG2441 Predicted butyrate kin 38.2 1.1E+02 0.0023 31.8 7.0 54 366-420 272-336 (374)
171 PRK00039 ruvC Holliday junctio 37.3 39 0.00085 32.5 3.7 29 23-53 1-29 (164)
172 PLN02939 transferase, transfer 36.8 3.3E+02 0.0071 33.9 12.0 124 648-772 238-366 (977)
173 PRK00047 glpK glycerol kinase; 36.7 28 0.00062 40.0 3.2 18 25-42 6-23 (498)
174 KOG0103 Molecular chaperones H 36.6 66 0.0014 37.6 5.9 66 672-748 650-725 (727)
175 cd00529 RuvC_resolvase Hollida 36.6 2.4E+02 0.0052 26.7 9.0 63 348-412 81-148 (154)
176 PF00349 Hexokinase_1: Hexokin 36.5 46 0.001 33.3 4.3 33 175-207 169-204 (206)
177 PRK09605 bifunctional UGMP fam 36.3 7.3E+02 0.016 28.7 21.9 52 367-418 245-301 (535)
178 PRK13310 N-acetyl-D-glucosamin 36.2 3.5E+02 0.0077 28.5 11.4 45 186-233 95-139 (303)
179 PF08194 DIM: DIM protein; In 35.5 51 0.0011 22.9 2.9 10 1-10 1-10 (36)
180 PRK05082 N-acetylmannosamine k 35.3 1.3E+02 0.0028 31.7 7.8 37 187-226 96-132 (291)
181 PF02801 Ketoacyl-synt_C: Beta 35.2 45 0.00098 29.9 3.6 47 348-394 25-73 (119)
182 PRK04123 ribulokinase; Provisi 34.8 29 0.00063 40.5 2.9 17 25-41 4-20 (548)
183 COG5026 Hexokinase [Carbohydra 34.8 90 0.0019 34.6 6.3 24 213-236 72-95 (466)
184 PRK10869 recombination and rep 34.6 6.6E+02 0.014 29.4 13.9 60 650-714 244-307 (553)
185 KOG2707 Predicted metalloprote 34.2 6.4E+02 0.014 27.4 21.0 233 139-393 79-331 (405)
186 PLN03170 chalcone synthase; Pr 33.8 2E+02 0.0044 32.0 9.3 51 344-394 104-155 (401)
187 PRK13317 pantothenate kinase; 33.4 37 0.00081 35.7 3.2 18 24-41 2-19 (277)
188 TIGR00250 RNAse_H_YqgF RNAse H 33.4 42 0.0009 30.9 3.1 15 27-41 1-15 (130)
189 PRK02224 chromosome segregatio 33.1 3E+02 0.0066 34.1 11.7 46 646-691 145-190 (880)
190 PRK03918 chromosome segregatio 33.0 4.1E+02 0.0088 33.0 12.8 46 700-747 656-701 (880)
191 PF02075 RuvC: Crossover junct 32.8 43 0.00093 31.6 3.2 18 26-43 1-18 (149)
192 KOG0678 Actin-related protein 32.5 3E+02 0.0065 29.4 9.3 98 163-277 108-208 (415)
193 PLN03172 chalcone synthase fam 32.4 1.3E+02 0.0028 33.4 7.4 51 344-394 100-151 (393)
194 PF08392 FAE1_CUT1_RppA: FAE1/ 31.7 1.2E+02 0.0026 32.0 6.5 46 349-394 86-132 (290)
195 TIGR00634 recN DNA repair prot 31.5 8.2E+02 0.018 28.6 14.2 65 650-719 251-317 (563)
196 PLN02669 xylulokinase 31.3 39 0.00084 39.5 3.2 21 22-42 6-26 (556)
197 PRK13310 N-acetyl-D-glucosamin 31.2 1.5E+02 0.0032 31.4 7.5 48 367-414 245-300 (303)
198 PRK09557 fructokinase; Reviewe 30.7 79 0.0017 33.6 5.2 48 367-414 244-299 (301)
199 PLN02854 3-ketoacyl-CoA syntha 30.6 1.2E+02 0.0025 35.1 6.7 55 333-394 182-237 (521)
200 TIGR03185 DNA_S_dndD DNA sulfu 30.0 6.5E+02 0.014 30.1 13.3 68 647-720 370-438 (650)
201 PLN03173 chalcone synthase; Pr 29.8 1.5E+02 0.0033 32.9 7.4 51 344-394 100-151 (391)
202 PF14574 DUF4445: Domain of un 29.8 80 0.0017 35.2 5.1 47 339-385 55-101 (412)
203 PF00480 ROK: ROK family; Int 29.7 1.6E+02 0.0036 28.1 6.9 44 187-233 91-134 (179)
204 TIGR02259 benz_CoA_red_A benzo 29.6 45 0.00098 36.7 3.0 17 25-41 3-19 (432)
205 PF08006 DUF1700: Protein of u 29.0 1.2E+02 0.0026 29.5 5.8 58 681-748 5-63 (181)
206 COG3426 Butyrate kinase [Energ 28.7 1.5E+02 0.0032 31.0 6.2 49 364-412 293-344 (358)
207 PF00815 Histidinol_dh: Histid 28.1 90 0.002 34.6 5.1 49 161-209 137-186 (412)
208 PF13941 MutL: MutL protein 27.9 27 0.00058 39.4 1.0 33 198-230 230-262 (457)
209 PF04614 Pex19: Pex19 protein 27.8 3.5E+02 0.0076 27.9 9.1 68 675-751 120-187 (248)
210 PRK07058 acetate kinase; Provi 27.5 5.1E+02 0.011 28.8 10.6 46 343-392 298-344 (396)
211 PF09286 Pro-kuma_activ: Pro-k 26.9 1.2E+02 0.0026 28.2 5.2 46 676-723 26-75 (143)
212 KOG0797 Actin-related protein 26.5 27 0.00058 39.1 0.7 53 366-418 525-591 (618)
213 PRK07515 3-oxoacyl-(acyl carri 26.1 1E+02 0.0023 33.8 5.3 47 344-392 267-313 (372)
214 KOG2517 Ribulose kinase and re 25.8 57 0.0012 37.2 3.1 24 23-46 5-28 (516)
215 cd00327 cond_enzymes Condensin 25.7 3.1E+02 0.0066 27.8 8.5 44 350-393 11-56 (254)
216 COG4012 Uncharacterized protei 25.7 1.3E+02 0.0029 30.9 5.3 81 217-309 2-96 (342)
217 PF03962 Mnd1: Mnd1 family; I 25.3 5.5E+02 0.012 25.2 9.6 16 647-662 59-74 (188)
218 PF11466 Doppel: Prion-like pr 24.1 57 0.0012 21.4 1.5 18 1-18 1-19 (30)
219 PF11593 Med3: Mediator comple 24.1 95 0.0021 33.5 4.1 43 711-755 9-51 (379)
220 PRK10081 entericidin B membran 23.4 74 0.0016 23.6 2.2 16 1-16 2-17 (48)
221 PLN03168 chalcone synthase; Pr 23.0 4.3E+02 0.0093 29.3 9.4 51 344-394 99-150 (389)
222 PF01150 GDA1_CD39: GDA1/CD39 23.0 74 0.0016 35.9 3.4 42 192-233 130-181 (434)
223 PF04848 Pox_A22: Poxvirus A22 22.6 1.2E+02 0.0026 28.4 4.1 19 24-42 1-19 (143)
224 PF08139 LPAM_1: Prokaryotic m 22.5 60 0.0013 20.6 1.4 14 1-14 7-20 (25)
225 KOG0104 Molecular chaperones G 22.5 5.7E+02 0.012 30.7 10.1 84 673-757 749-843 (902)
226 COG1069 AraB Ribulose kinase [ 22.2 76 0.0016 36.2 3.1 24 23-46 2-25 (544)
227 COG4020 Uncharacterized protei 21.8 2.6E+02 0.0056 28.7 6.4 85 333-420 228-321 (332)
228 COG0248 GppA Exopolyphosphatas 21.8 6.6E+02 0.014 28.9 10.6 95 216-345 3-99 (492)
229 PRK00877 hisD bifunctional his 21.8 85 0.0018 35.0 3.4 48 161-209 151-199 (425)
230 PRK13321 pantothenate kinase; 21.6 80 0.0017 32.7 3.1 16 26-41 2-17 (256)
231 PLN02192 3-ketoacyl-CoA syntha 21.2 3.1E+02 0.0068 31.6 7.9 55 340-394 170-225 (511)
232 cd00520 RRF Ribosome recycling 21.2 6.4E+02 0.014 24.5 9.1 18 646-663 100-117 (179)
233 KOG1794 N-Acetylglucosamine ki 20.9 2.6E+02 0.0057 29.4 6.4 83 333-419 231-319 (336)
234 smart00502 BBC B-Box C-termina 20.9 5.7E+02 0.012 22.4 13.3 93 668-773 33-125 (127)
235 PF02075 RuvC: Crossover junct 20.8 2.9E+02 0.0063 26.0 6.4 30 218-259 1-30 (149)
236 TIGR02707 butyr_kinase butyrat 20.7 1.2E+02 0.0026 33.2 4.3 45 367-411 293-340 (351)
237 cd06572 Histidinol_dh Histidin 20.1 2E+02 0.0043 31.8 5.7 49 161-209 123-172 (390)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-123 Score=938.73 Aligned_cols=625 Identities=29% Similarity=0.520 Sum_probs=570.8
Q ss_pred ChhhHHHHHHHHHHHHhh--hc----------CCCCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEE
Q 004058 1 MKRMLLKLLTFLSVASLL--VS----------HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAF 68 (776)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~--~~----------~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~ 68 (776)
||+.+++.+.+++.++++ .. .....|||||||||||||+++ ++| .++|+.|++|+|.+||+|+|
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gtvigIdLGTTYsCVgV~--kNg--rvEIiANdQGNRItPSyVaF 76 (663)
T KOG0100|consen 1 MKLSFLLAMLLFLAVLFFGCSEAASTEKEDEAEKLGTVIGIDLGTTYSCVGVY--KNG--RVEIIANDQGNRITPSYVAF 76 (663)
T ss_pred CchHHHHHHHHHHHHHHhhhhhhhhhccccchhccceEEEEecCCceeeEEEE--eCC--eEEEEecCCCCccccceeee
Confidence 886665555444443332 11 124679999999999999999 777 68999999999999999999
Q ss_pred eCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCchhhHhhHhhcCCCceEeeCC-CCceEEEeCCC--ccccHHHHHHHH
Q 004058 69 HESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQVKHLIDSLYLPFNVVEDS-RGAVSFKIDEN--NNFSVEELLAMV 145 (776)
Q Consensus 69 ~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~eel~a~~ 145 (776)
.+.+|++|..|++++..||++++++.||||||.+.+.....+.++|||+++... ...+.+.+.+| +.++|+++.+|+
T Consensus 77 t~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMi 156 (663)
T KOG0100|consen 77 TDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMI 156 (663)
T ss_pred ccchhhhhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHH
Confidence 999999999999999999999999999999998776666678889999999765 55667777655 789999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecC
Q 004058 146 LSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGA 225 (776)
Q Consensus 146 L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~Gg 225 (776)
|.++++.|+.++|.++.++|+||||||++.||+++++|..+|||+++++||||+|||++|++++ ....+++||||+||
T Consensus 157 L~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDK--k~gEknilVfDLGG 234 (663)
T KOG0100|consen 157 LTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK--KDGEKNILVFDLGG 234 (663)
T ss_pred HHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccc--cCCcceEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 35568999999999
Q ss_pred ccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004058 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVK 305 (776)
Q Consensus 226 gT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e 305 (776)
||||+|++ ++.+|.|+|+++.||.+|||+|||+++++|+.+.++++ ++.|++.+.+++.+|+++||
T Consensus 235 GTFDVSlL------------tIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK--~gkDv~kdnkA~~KLrRe~E 300 (663)
T KOG0100|consen 235 GTFDVSLL------------TIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKK--HGKDVRKDNKAVQKLRREVE 300 (663)
T ss_pred ceEEEEEE------------EEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhh--cCCccchhhHHHHHHHHHHH
Confidence 99999999 55699999999999999999999999999999999999 99999999999999999999
Q ss_pred HHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHH
Q 004058 306 RTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQA 385 (776)
Q Consensus 306 ~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~ 385 (776)
+||+.||+..++.+.|++++++.||+-++||..||++..++|.....|++++|+++++...+|+.|+|||||+|||.||+
T Consensus 301 kAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQq 380 (663)
T KOG0100|consen 301 KAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQ 380 (663)
T ss_pred HHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCc
Q 004058 386 KLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPS 465 (776)
Q Consensus 386 ~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~ 465 (776)
+|+++|++++.++.+|||||||+|||.+|..+|+.... .++.+.|++|.++||++.|+.|+ .||||++.+|+
T Consensus 381 llk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t-~divLLDv~pLtlGIETvGGVMT-------klI~RNTviPT 452 (663)
T KOG0100|consen 381 LLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDT-GDIVLLDVNPLTLGIETVGGVMT-------KLIPRNTVIPT 452 (663)
T ss_pred HHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCc-CcEEEEeeccccceeeeecceee-------ccccCCcccCc
Confidence 99999988899999999999999999999999998888 89999999999999999999885 89999999999
Q ss_pred ceEEeeecc----cceEEEEEeecCCCCCCCCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeee
Q 004058 466 KMFRSIIHA----KDFEVSLAYESEDLLPPGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRA 541 (776)
Q Consensus 466 ~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~ 541 (776)
+++..|++. ..++|.+ |+|++++.. +|+.+|.|.++|||+++ +| .| .|+|+|++|.||+|+|+..
T Consensus 453 kKSQvFsTa~DnQ~tV~I~v-yEGER~mtk--dn~lLGkFdltGipPAP-----RG--vp-qIEVtFevDangiL~VsAe 521 (663)
T KOG0100|consen 453 KKSQVFSTAQDNQPTVTIQV-YEGERPMTK--DNHLLGKFDLTGIPPAP-----RG--VP-QIEVTFEVDANGILQVSAE 521 (663)
T ss_pred cccceeeecccCCceEEEEE-eeccccccc--cccccccccccCCCCCC-----CC--Cc-cEEEEEEEccCceEEEEee
Confidence 999999875 3578888 999999988 69999999999999997 55 67 9999999999999976532
Q ss_pred eEEEEEEEEeeccccccccccccCCCCCCchhhhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhh
Q 004058 542 DAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLT 621 (776)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (776)
+- . +.++
T Consensus 522 DK--------------------------------g--------------tg~~--------------------------- 528 (663)
T KOG0100|consen 522 DK--------------------------------G--------------TGKK--------------------------- 528 (663)
T ss_pred cc--------------------------------C--------------CCCc---------------------------
Confidence 20 0 0000
Q ss_pred hcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCC
Q 004058 622 EKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVST 701 (776)
Q Consensus 622 ~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~ 701 (776)
-.|++++. ...||++++++|++.+++|+.+|+...++.++||.||+|+|++++.+.+.+.+...++
T Consensus 529 ----------~kitItNd----~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~ 594 (663)
T KOG0100|consen 529 ----------EKITITND----KGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLS 594 (663)
T ss_pred ----------ceEEEecC----CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCC
Confidence 04677643 4579999999999999999999999999999999999999999999988777999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhh
Q 004058 702 SEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKEL 752 (776)
Q Consensus 702 ~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~pi~~R~~e~ 752 (776)
+++++++.+.++++.+||+++ ++|++++|.+|+++|+.+++||..+++..
T Consensus 595 ~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 595 DEDKETIEDAVEEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred hhHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999 79999999999999999999999998874
No 2
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-105 Score=862.41 Aligned_cols=750 Identities=36% Similarity=0.571 Sum_probs=612.1
Q ss_pred ChhhHHHHHHHHHHHHhhhcCCCCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHH
Q 004058 1 MKRMLLKLLTFLSVASLLVSHSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEAS 80 (776)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~ 80 (776)
|++.+++++.++.+ +....+.++|++|||||.|++|+++ +|| .|++|++|..++|++|++|+|.+++|+||.+|.
T Consensus 1 ~~~~~llv~l~~~~--~~~~~~~~AvmsVDlGse~~Kv~vV--kPG-vPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~ 75 (902)
T KOG0104|consen 1 MKGRVLLVILLLCL--FVALSSALAVMSVDLGSEWIKVAVV--KPG-VPMEIVLNKESRRKTPSIVAFKGGERIFGEAAA 75 (902)
T ss_pred CcchhHHHHHHHHH--HhcccchhhheeeecccceeEEEEe--cCC-CCeEEeechhhcccCcceEEecCCceehhhhhh
Confidence 55554444433333 3344566889999999999999999 898 999999999999999999999999999999999
Q ss_pred HhHhhCcchHHHHHHHhhCCCchh-hHhhHhhcCCCceEeeCC-CCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcC
Q 004058 81 GIIARYPHRVYSQLRDMIGKPFKQ-VKHLIDSLYLPFNVVEDS-RGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAK 158 (776)
Q Consensus 81 ~~~~~~p~~~~~~~K~llG~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~ 158 (776)
+++.++|++++.+++.|||+...+ ......+.+++|.++.++ ++++.|.+.+...|++|+|+||+|.+.+..|+.+..
T Consensus 76 ~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~ 155 (902)
T KOG0104|consen 76 SMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAK 155 (902)
T ss_pred hhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999995432 334455668999999997 999999998877899999999999999999999999
Q ss_pred CCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhcccc--CCCCCCcEEEEEEecCccceeeEEEEe
Q 004058 159 LAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDK--DFSNESRHVVFYDMGATTTYAALVYFS 236 (776)
Q Consensus 159 ~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~--~~~~~~~~vlV~D~GggT~dvsv~~~~ 236 (776)
.+|+++|||||.||++.||+++.+||++||++++.||+|.+||||.|+..+ .++..+++++|||||+|+|.++++.|.
T Consensus 156 ~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~ 235 (902)
T KOG0104|consen 156 QPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQ 235 (902)
T ss_pred cchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEE
Confidence 999999999999999999999999999999999999999999999999975 677889999999999999999999999
Q ss_pred eccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc
Q 004058 237 AYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM 316 (776)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~ 316 (776)
....+..| ....+++++++++|..|||..|.++|.+|+.+.|.++.+.+.++..+||+|+||.++|+++|..||+|.+
T Consensus 236 ~v~~k~~g--~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANse 313 (902)
T KOG0104|consen 236 LVKTKEQG--GKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSE 313 (902)
T ss_pred eecccccc--CccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchh
Confidence 88777665 3467899999999999999999999999999999999666778999999999999999999999999999
Q ss_pred eeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCcc
Q 004058 317 APISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTEL 396 (776)
Q Consensus 317 ~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i 396 (776)
+.++|++|++|+||+.+|||++||++|.+++.++..||+++|..++++.++|+.|+|+||+||+|.||+.|.++.+..++
T Consensus 314 a~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei 393 (902)
T KOG0104|consen 314 AFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEEL 393 (902)
T ss_pred hHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhHHhHHHHHHHHhcCCccccCcceEEeccceeeeeeecCCc-cccCCCcceeeeeCCCCCCcceEEeeecc-
Q 004058 397 DRHLDADEAIVLGASLLAANLSDGIKLNRKLGMVDGSSYGFVVELDGPE-LQKDESTRQLLAPRMKKLPSKMFRSIIHA- 474 (776)
Q Consensus 397 ~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~~d~~~~~igi~~~~~~-~~~~~~~~~~l~~~~~~~P~~~~~~f~~~- 474 (776)
.+++|+|||+++||+|+||.||.+|++ +++.+.|.+.|+|-+++.+.. ....++....+|+++.++|.++.++|+..
T Consensus 394 ~knlNaDEA~vmGav~~aA~LSksFKv-Kpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ys 472 (902)
T KOG0104|consen 394 GKNLNADEAAVMGAVYQAAHLSKSFKV-KPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYS 472 (902)
T ss_pred hcccChhHHHHHHHHHHHHhhcccccc-cceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccC
Confidence 999999999999999999999999999 999999999999999987752 22344555679999999999999999876
Q ss_pred cceEEEEEeecCCCCCCCCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeecc
Q 004058 475 KDFEVSLAYESEDLLPPGATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVP 554 (776)
Q Consensus 475 ~~~~i~i~y~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~ 554 (776)
.+|.+.++|..- ..++..|+++|+..+..+.....-+ ...|+++|.+|.+|++.|+.++++++.....+..
T Consensus 473 ddf~~~~n~~~~--------~~nl~~velsgV~d~~kk~~~~~~~-~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~ 543 (902)
T KOG0104|consen 473 DDFPFNINYGDL--------GQNLTTVELSGVKDALKKNSYSDSE-SKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSG 543 (902)
T ss_pred Cccccccchhhh--------ccCccEEEEecchHHHHhcccchhh-ccCceEEEEEcCcCceEEeeeeEEEeccCCcccc
Confidence 578888866532 1456789999999888765432111 2269999999999999999999998764322111
Q ss_pred ccccccccccCCCCCCchhhhhhccccccccccc--ccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhccccc--cee
Q 004058 555 KKNLIVENVASSSPNISAETAAQNMTVEANENLQ--SESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKK--RTF 630 (776)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~--~~~ 630 (776)
....+. .....+...+..+.+.+++...+.+ +.+..++..+...++.+.......++.+....+.++..+ -..
T Consensus 544 ~~~st~---~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~ 620 (902)
T KOG0104|consen 544 DKKSTL---SKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVV 620 (902)
T ss_pred hhhhhh---hccccccccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCccee
Confidence 111000 0000000000000000000000000 000000000000000000000001111111111122111 223
Q ss_pred eeeeEEEeeccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHH
Q 004058 631 RVPLKIVEKTVGPGASLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVE 710 (776)
Q Consensus 631 ~~~i~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~ 710 (776)
+++|..++ .. ..-|+...+.+.+.+++.+.++|+.+.++++|.|.||+|+|++.++|++++ |.+|.+++|++.|++
T Consensus 621 ~~~i~~~~--~~-~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~e-y~e~at~EEk~~L~~ 696 (902)
T KOG0104|consen 621 RLQIQETY--PD-LPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDE-YAEVATEEEKKILKK 696 (902)
T ss_pred Eeeeeeec--cc-ccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCch-HhhhcCHHHHHHHHH
Confidence 34444442 11 223999999999999999999999999999999999999999999999977 999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHhh
Q 004058 711 KLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQVLH 774 (776)
Q Consensus 711 ~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~pi~~R~~e~~~rp~~~~~~~~~l~~~~~~~~ 774 (776)
.+..+.+||++++.+.++++|.+|+.+|++++..+..|..++.++|..++.++..++++.+|+-
T Consensus 697 ~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~ 760 (902)
T KOG0104|consen 697 KVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLK 760 (902)
T ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999988863
No 3
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-101 Score=831.63 Aligned_cols=661 Identities=30% Similarity=0.503 Sum_probs=583.2
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCch
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (776)
|+++|||||..||.+|++ +.+ ++++|.|+.|+|.+|++|+|....|++|.+|..+...|+.+++.++||++||.+.
T Consensus 1 msvvG~D~Gn~nc~iavA--r~~--gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~ 76 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVA--RQG--GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFS 76 (727)
T ss_pred CCceeeeccccceeeeee--ccC--CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccC
Confidence 359999999999999999 444 6899999999999999999999999999999999999999999999999999776
Q ss_pred hhHhhHhhcCCCceEeeCCCCceEEEeC--CC-ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHH
Q 004058 104 QVKHLIDSLYLPFNVVEDSRGAVSFKID--EN-NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (776)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l 180 (776)
+.........+||.++...+|.+.+.+. |. ..+++++|+||+|.+++..++..+..++.+|||+||+||++.||+++
T Consensus 77 dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRrav 156 (727)
T KOG0103|consen 77 DPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAV 156 (727)
T ss_pred ChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHH
Confidence 6555556678999999999998888765 32 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeecchhHHHHHHhcccc-CC---CCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEE
Q 004058 181 MQAAELAGMNVLSLVNEHSGAALQYGIDK-DF---SNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKD 256 (776)
Q Consensus 181 ~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~-~~---~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~ 256 (776)
.+||++|||++++|++|.+|+||+|++++ ++ ..++.+++++|+|.+++.+|++.|. .|++.+++
T Consensus 157 ldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~------------kG~lkvl~ 224 (727)
T KOG0103|consen 157 LDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFT------------KGKLKVLA 224 (727)
T ss_pred HhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeec------------cCcceeee
Confidence 99999999999999999999999999987 33 3457899999999999999999886 78999999
Q ss_pred eecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeH
Q 004058 257 VRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITR 336 (776)
Q Consensus 257 ~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr 336 (776)
+.+|.++||++||..|.+|++.+|+.+ |++|+..++++..||+.+||++|+.||+|...+++|++++++.|.+..|+|
T Consensus 225 ta~D~~lGgr~fDe~L~~hfa~efk~k--ykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~R 302 (727)
T KOG0103|consen 225 TAFDRKLGGRDFDEALIDHFAKEFKTK--YKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKR 302 (727)
T ss_pred eecccccccchHHHHHHHHHHHHhccc--cccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccH
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHH
Q 004058 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ 416 (776)
+|||+++.|+++|+..++..+|+.++++.+||+.|.+|||+||+|.|++.|.++||. .+.+++|.|||||+|||+++|+
T Consensus 303 eEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgk-e~s~TlN~dEavarG~ALqcAI 381 (727)
T KOG0103|consen 303 EEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGK-ELSRTLNQDEAVARGAALQCAI 381 (727)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCC-cccccccHHHHHHHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999996 7899999999999999999999
Q ss_pred hcCCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecccceEEEEEeecCCCCCCCCCCC
Q 004058 417 LSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAKDFEVSLAYESEDLLPPGATSP 496 (776)
Q Consensus 417 ls~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~~~~i~i~y~~~~~~~~~~~~~ 496 (776)
+|+.||+ +.+.+.|+.||+|.+.|.+... |......+||+|.++|..+.++|.+..+|++.+.|.+...+|. ...
T Consensus 382 lSP~frV-Ref~v~Di~pysIs~~w~~~~e--d~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~--~~~ 456 (727)
T KOG0103|consen 382 LSPTFRV-REFSVEDIVPYSISLRWVKQGE--DGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPY--PKP 456 (727)
T ss_pred cCccccc-eecceecccceeEEEEeccccc--cCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCC--CCC
Confidence 9999999 9999999999999999987532 2233358999999999999999999999999999998788883 578
Q ss_pred ceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhhhh
Q 004058 497 VFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAA 576 (776)
Q Consensus 497 ~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (776)
.|++|++.++.+.. .| +.. +++|...++.+|++.|.+|.++.+.... ++|.... +..
T Consensus 457 kI~~~~i~~v~~~~-----~g-e~s-kVKvkvr~n~~Gi~~i~sA~~~e~~~ve-ev~~~~~---------------e~~ 513 (727)
T KOG0103|consen 457 KIEKWTITGVTPSE-----DG-EFS-KVKVKVRLNEHGIDTIESATLIEDIEVE-EVPEEPM---------------EYD 513 (727)
T ss_pred ceeeEEecccccCc-----cc-ccc-ceeEEEEEcCccceeeecceeecccchh-ccccchh---------------hhh
Confidence 99999999987653 22 223 8999999999999999999887433211 1111100 000
Q ss_pred hcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHH
Q 004058 577 QNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAE 656 (776)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~ 656 (776)
+. . + ..+...-++.|+++.++.|++.... ...|+..+++..+
T Consensus 514 --~~------------------------------~-~--~~~~~~~~~~k~kvk~~~L~~~~~~---~~~l~~~~l~~~~ 555 (727)
T KOG0103|consen 514 --DA------------------------------A-K--MLERIAPAENKKKVKKVDLPIEAYT---KGALITDELELYI 555 (727)
T ss_pred --cc------------------------------h-h--hhhhhccccccceeeeccccceeee---ccccCHHHHHHHH
Confidence 00 0 0 0000000111333444444444222 3469999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 004058 657 AKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLD 736 (776)
Q Consensus 657 ~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~ 736 (776)
+++.+|..+|+...++.++||.||+|||+||++|.+. |.+|++++++++|...|+++++|||++|++.++..|..|+.
T Consensus 556 e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~--y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~ 633 (727)
T KOG0103|consen 556 EKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDK--YEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLE 633 (727)
T ss_pred HHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhh--hhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 9999999999999999999999999999999999975 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHh
Q 004058 737 VLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQVL 773 (776)
Q Consensus 737 ~L~~~~~pi~~R~~e~~~rp~~~~~~~~~l~~~~~~~ 773 (776)
+|+.+++ ..|+.+++.||++++.+.+.|+..+..+
T Consensus 634 elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~ 668 (727)
T KOG0103|consen 634 ELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAI 668 (727)
T ss_pred HHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999888764
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.2e-99 Score=878.16 Aligned_cols=604 Identities=27% Similarity=0.509 Sum_probs=536.0
Q ss_pred CCCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCC
Q 004058 22 SQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (776)
Q Consensus 22 ~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (776)
..+.+||||||||||+||++ .+| ++++++|..|+|++||+|+|.+++++||..|..++.++|.++++++||+||+.
T Consensus 2 ~~~~~iGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 77 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVW--KNE--NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRK 77 (653)
T ss_pred CcccEEEEEeCcccEEEEEE--eCC--ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCC
Confidence 35679999999999999999 665 68999999999999999999999999999999999999999999999999997
Q ss_pred chhhHhhHhhcCCCceEeeCCCCceEEEe--CCC-ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHH
Q 004058 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKI--DEN-NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (776)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~ 178 (776)
+.+.........+||.++.+.++...+.+ .+. ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+
T Consensus 78 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~ 157 (653)
T PTZ00009 78 FDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQ 157 (653)
T ss_pred CCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHH
Confidence 65433333445789999887777655544 332 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEee
Q 004058 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (776)
Q Consensus 179 ~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (776)
++++||++|||++++||+||+|||++|+..+.. ..+.++|||||||||||+||+++. .+.++++++.
T Consensus 158 a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~-~~~~~vlv~D~GggT~dvsv~~~~------------~~~~~v~a~~ 224 (653)
T PTZ00009 158 ATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKG-DGEKNVLIFDLGGGTFDVSLLTIE------------DGIFEVKATA 224 (653)
T ss_pred HHHHHHHHcCCceeEEecchHHHHHHHhhhccC-CCCCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEec
Confidence 999999999999999999999999999986532 235789999999999999999774 6789999999
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhhcCC-CCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHH
Q 004058 259 WDAELGGQNMELRLVEYFADEFNKQVGN-GVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQ 337 (776)
Q Consensus 259 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~-~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~ 337 (776)
|+.++||++||.+|++|+.++|..+ + +.++..+++++.+|+.+||++|+.||.+.++.+.|++++++.++.++|||+
T Consensus 225 gd~~lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~ 302 (653)
T PTZ00009 225 GDTHLGGEDFDNRLVEFCVQDFKRK--NRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRA 302 (653)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHh--ccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHH
Confidence 9999999999999999999999887 4 467778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHh
Q 004058 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (776)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~l 417 (776)
+|+++|+++++++..+|+++|+.++++..+|+.|+||||+||+|+|+++|+++|+...+..++|||+|||+|||++|+.+
T Consensus 303 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~l 382 (653)
T PTZ00009 303 RFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL 382 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999987678889999999999999999999
Q ss_pred cCC--ccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCC
Q 004058 418 SDG--IKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPP 491 (776)
Q Consensus 418 s~~--~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~ 491 (776)
++. +++ +++.+.|++|++||++..++.+ .+|||+|+++|++++.+|++. +.+.|.| |+|++..+.
T Consensus 383 s~~~~~~~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i-~ege~~~~~ 453 (653)
T PTZ00009 383 TGEQSSQV-QDLLLLDVTPLSLGLETAGGVM-------TKLIERNTTIPTKKSQIFTTYADNQPGVLIQV-FEGERAMTK 453 (653)
T ss_pred cCCccccc-cceEEEeecccccCccccCCce-------EEEEeCCCcCCccceeEeEeecCCCceEEEEE-EecccccCC
Confidence 975 677 8899999999999999776654 389999999999999999764 3589999 999987766
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCc
Q 004058 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (776)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (776)
+|..||+|.|.++++.+ +| .+ .|+|+|++|.||+|+|...+..
T Consensus 454 --~n~~lg~~~i~~i~~~~-----~g--~~-~i~v~f~id~~Gil~v~~~~~~--------------------------- 496 (653)
T PTZ00009 454 --DNNLLGKFHLDGIPPAP-----RG--VP-QIEVTFDIDANGILNVSAEDKS--------------------------- 496 (653)
T ss_pred --CCceEEEEEEcCCCCCC-----CC--Cc-eEEEEEEECCCCeEEEEEeccc---------------------------
Confidence 58899999999998875 23 34 7999999999999987632100
Q ss_pred hhhhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHH
Q 004058 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (776)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~ 651 (776)
++ +. .+++++. ...+||.++
T Consensus 497 ----------t~------------------------------------------~~----~~~~i~~----~~~~ls~~~ 516 (653)
T PTZ00009 497 ----------TG------------------------------------------KS----NKITITN----DKGRLSKAD 516 (653)
T ss_pred ----------CC------------------------------------------ce----eeEEEee----ccccccHHH
Confidence 00 00 1334432 134699999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 004058 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (776)
Q Consensus 652 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~ 731 (776)
++++++++.+|..+|+.++++.++||+||+|||++|++|++++ |.++++++++++|.+.+++.++|||+ +++++.++|
T Consensus 517 i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~-~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~~~ 594 (653)
T PTZ00009 517 IDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEK-VKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKEEF 594 (653)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhh-hhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHHHH
Confidence 9999999999999999999999999999999999999997655 99999999999999999999999995 578999999
Q ss_pred HHHHHHHHHhhhHHHHHHHhh
Q 004058 732 QERLDVLKAIGDPVFFRFKEL 752 (776)
Q Consensus 732 ~~k~~~L~~~~~pi~~R~~e~ 752 (776)
++|+++|+++++||..|+...
T Consensus 595 ~~kl~eL~~~~~pi~~r~~~~ 615 (653)
T PTZ00009 595 EHKQKEVESVCNPIMTKMYQA 615 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998644
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.2e-98 Score=865.52 Aligned_cols=607 Identities=24% Similarity=0.446 Sum_probs=537.5
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEe-CCceEEcHhHHHhHhhCcchHHHHHHHhhCCCc
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (776)
..+||||||||||+||++ .+| . +.+++|..|+|++||+|+|. ++++++|..|+.++..+|.++++++||+||+++
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g-~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~ 77 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVM--EGG-K-PVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRY 77 (668)
T ss_pred CcEEEEEeCCCcEEEEEE--ECC-e-EEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCc
Confidence 469999999999999999 666 3 45778999999999999996 578999999999999999999999999999988
Q ss_pred hhhHhhHhhcCCCceEeeCCCCceEEEeCC-CccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHH
Q 004058 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (776)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~ 181 (776)
.+++. ....+||.+..+++|.+.+.+.. ++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++++
T Consensus 78 ~~~~~--~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 155 (668)
T PRK13410 78 DELDP--ESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATR 155 (668)
T ss_pred hhhHH--hhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 76654 34578999999888888888754 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCC
Q 004058 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (776)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (776)
+||++|||++++||+||+|||++|++.+ ..+.++||||+||||||+|++++. ++.++|+++.|+.
T Consensus 156 ~Aa~~AGl~v~~li~EPtAAAlayg~~~---~~~~~vlV~DlGgGT~Dvsv~~~~------------~g~~~V~at~gd~ 220 (668)
T PRK13410 156 DAGRIAGLEVERILNEPTAAALAYGLDR---SSSQTVLVFDLGGGTFDVSLLEVG------------NGVFEVKATSGDT 220 (668)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhcccc---CCCCEEEEEECCCCeEEEEEEEEc------------CCeEEEEEeecCC
Confidence 9999999999999999999999999875 245789999999999999999764 6789999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHH
Q 004058 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQ 337 (776)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~ 337 (776)
++||.+||.+|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++...|||+
T Consensus 221 ~lGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (668)
T PRK13410 221 QLGGNDFDKRIVDWLAEQFLEK--EGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRK 298 (668)
T ss_pred CCChhHHHHHHHHHHHHHHHhh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHH
Confidence 9999999999999999999988 778888889999999999999999999999999999987643 4788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHh
Q 004058 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (776)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~l 417 (776)
+|+++|+++++++..+|+++|+.+++++.+|+.|+||||+||||+|++.|+++||. .+..++|||+|||+|||++|+.+
T Consensus 299 ~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~-~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 299 QFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR-EPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCC-CcccCCCCchHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999985 67789999999999999999999
Q ss_pred cCCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCCC
Q 004058 418 SDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGA 493 (776)
Q Consensus 418 s~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~ 493 (776)
++. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|++. ..+.+.+ |+|++.++.
T Consensus 378 s~~--~-~~~~l~Dv~p~slgie~~~g~~-------~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v-~qGe~~~~~-- 444 (668)
T PRK13410 378 AGE--L-KDLLLLDVTPLSLGLETIGGVM-------KKLIPRNTTIPVRRSDVFSTSENNQSSVEIHV-WQGEREMAS-- 444 (668)
T ss_pred ccc--c-cceeEEeeccccccceecCCee-------EEEEeCCCcccccccccceeccCCCcEEEEEE-Eeecccccc--
Confidence 884 4 6789999999999999887655 389999999999999999764 4688888 999988766
Q ss_pred CCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchh
Q 004058 494 TSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAE 573 (776)
Q Consensus 494 ~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (776)
+|..||+|.|.|+++++ +| .+ +|+|+|++|.||+|+|+..+..
T Consensus 445 ~n~~lg~~~l~~i~~~~-----~g--~~-~I~v~f~id~nGiL~V~a~d~~----------------------------- 487 (668)
T PRK13410 445 DNKSLGRFKLSGIPPAP-----RG--VP-QVQVAFDIDANGILQVSATDRT----------------------------- 487 (668)
T ss_pred CCceEEEEEEeCCCCCC-----CC--CC-eEEEEEEECCCcEEEEEEEEcC-----------------------------
Confidence 58899999999999876 33 45 8999999999999988743210
Q ss_pred hhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHH
Q 004058 574 TAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALV 653 (776)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~ 653 (776)
++ ++ . .++++ ...+||.++++
T Consensus 488 --------tg------------------------------------------~~--~--~~~i~-----~~~~ls~~ei~ 508 (668)
T PRK13410 488 --------TG------------------------------------------RE--Q--SVTIQ-----GASTLSEQEVN 508 (668)
T ss_pred --------CC------------------------------------------ce--e--eeeec-----ccccCCHHHHH
Confidence 00 00 0 23333 12469999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccC-ccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 004058 654 DAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFET-SEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQ 732 (776)
Q Consensus 654 ~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~ 732 (776)
++++++++|..+|+.++++.++||+||+|||++|++|.+ ...|..++++++|+++..+|++.++|||+++.+...+.|.
T Consensus 509 ~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~ 588 (668)
T PRK13410 509 RMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVA 588 (668)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999965 1238899999999999999999999999998888899999
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhchHHHHHHHHH
Q 004058 733 ERLDVLKAIGDPVFFRFKELTARPASVEHAQKY 765 (776)
Q Consensus 733 ~k~~~L~~~~~pi~~R~~e~~~rp~~~~~~~~~ 765 (776)
++++.|+.+..||..|+.| +-...++.+++.
T Consensus 589 ~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~ 619 (668)
T PRK13410 589 DLQEALYGLNREVRAEYKE--EDEGPLQGIKNT 619 (668)
T ss_pred HHHHHHHHHHHHHHHHHhh--cccchhhhHHhh
Confidence 9999999999999999998 233334444443
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7e-97 Score=859.13 Aligned_cols=591 Identities=24% Similarity=0.446 Sum_probs=528.2
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeC-CceEEcHhHHHhHhhCcchHHHHHHHhhCCCc
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (776)
+.+||||||||||+||++ .+| .+ .+++|.+|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+.+
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g-~~-~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 77 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVL--EGG-KP-IVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRW 77 (653)
T ss_pred CcEEEEEeCcccEEEEEE--ECC-EE-EEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCc
Confidence 359999999999999999 666 34 58999999999999999964 68999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHH
Q 004058 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (776)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 182 (776)
.+.+. ....+||.++...++.+.+.+. +..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 78 ~d~~~--~~~~~~~~~v~~~~~~~~~~i~-~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 78 DDTEE--ERSRVPYTCVKGRDDTVNVQIR-GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred cchhH--HhhcCCceEEecCCCceEEEEC-CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 66554 3457899999888888888885 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCC
Q 004058 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (776)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (776)
||++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++. ++.++|+++.|+.+
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~--~~~~~vlV~DlGgGT~dvsi~~~~------------~~~~~V~at~gd~~ 220 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQ--DQEQLILVFDLGGGTFDVSILQLG------------DGVFEVKATAGNNH 220 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccc--CCCCEEEEEEcCCCeEEEEEEEEe------------CCEEEEEEEecCCC
Confidence 9999999999999999999999998652 335789999999999999999764 67899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeeccc----CcceEEEeeHHH
Q 004058 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYV----DIDFRSSITRQK 338 (776)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~e 338 (776)
+||++||++|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.++++.+.. +.++.+.|||++
T Consensus 221 LGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~ 298 (653)
T PRK13411 221 LGGDDFDNCIVDWLVENFQQQ--EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAK 298 (653)
T ss_pred cCHHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHH
Confidence 999999999999999999988 77888889999999999999999999999999999987754 357889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhc
Q 004058 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (776)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls 418 (776)
|+++|+|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++|+...+..++|||+|||+|||++|+.++
T Consensus 299 fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~ 378 (653)
T PRK13411 299 FEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLG 378 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999876788899999999999999999998
Q ss_pred CCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeeccc----ceEEEEEeecCCCCCCCCC
Q 004058 419 DGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGAT 494 (776)
Q Consensus 419 ~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~ 494 (776)
+. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|.+.. .+.|.+ |+|++..+. .
T Consensus 379 ~~--~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v-~~ge~~~~~--~ 445 (653)
T PRK13411 379 GE--V-KDLLLLDVTPLSLGIETLGEVF-------TKIIERNTTIPTSKSQVFSTATDGQTSVEIHV-LQGERAMAK--D 445 (653)
T ss_pred CC--c-cceeeeecccceeeEEecCCce-------EEEEECCCcccceeeEEEEeccCCCeEEEEEE-EEecCcccc--c
Confidence 75 4 7899999999999999887655 3899999999999999998743 488888 999988776 5
Q ss_pred CCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhh
Q 004058 495 SPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAET 574 (776)
Q Consensus 495 ~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (776)
|..||.|.+.|+++++ +| .+ .|+|+|++|.||+|+|+..+..
T Consensus 446 n~~lg~~~l~~i~~~~-----~g--~~-~i~v~f~id~~Gil~v~a~d~~------------------------------ 487 (653)
T PRK13411 446 NKSLGKFLLTGIPPAP-----RG--VP-QIEVSFEIDVNGILKVSAQDQG------------------------------ 487 (653)
T ss_pred CceeeEEEEcCCCCCC-----CC--Cc-cEEEEEEECCCCeEEEEEeecc------------------------------
Confidence 8899999999999875 33 45 8999999999999987743200
Q ss_pred hhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHH
Q 004058 575 AAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVD 654 (776)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~ 654 (776)
++ ++ ..+.++. ..+||.+++++
T Consensus 488 -------t~------------------------------------------~~----~~~~i~~-----~~~ls~~ei~~ 509 (653)
T PRK13411 488 -------TG------------------------------------------RE----QSIRITN-----TGGLSSNEIER 509 (653)
T ss_pred -------CC------------------------------------------ce----EeeEEec-----cccchHHHHHH
Confidence 00 00 0233331 23699999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004058 655 AEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQER 734 (776)
Q Consensus 655 ~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k 734 (776)
+++++++|..+|+.++++.++||+||+|||.+|+.|++ +.+++++++|+++.+.|++.++||+++ +++.++|+++
T Consensus 510 ~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~---~~~~~~~~er~~i~~~l~~~~~wL~~~--~~~~~~~~~~ 584 (653)
T PRK13411 510 MRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE---NGELISEELKQRAEQKVEQLEAALTDP--NISLEELKQQ 584 (653)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence 99999999999999999999999999999999999974 578999999999999999999999983 5789999999
Q ss_pred HHHHHHhhhHHHHHHHh
Q 004058 735 LDVLKAIGDPVFFRFKE 751 (776)
Q Consensus 735 ~~~L~~~~~pi~~R~~e 751 (776)
+++|++.+.|+..++++
T Consensus 585 ~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 585 LEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=8.8e-97 Score=858.46 Aligned_cols=592 Identities=23% Similarity=0.441 Sum_probs=528.2
Q ss_pred CCCCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEe-CCceEEcHhHHHhHhhCcchHHHHHHHhhC
Q 004058 21 HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIG 99 (776)
Q Consensus 21 ~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG 99 (776)
..++.+||||||||||+||++ .+| ++++++|..|+|++||+|+|. ++++++|..|..++.++|.++++++|||||
T Consensus 38 ~~~~~viGIDlGTt~s~va~~--~~~--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG 113 (663)
T PTZ00400 38 KATGDIVGIDLGTTNSCVAIM--EGS--QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIG 113 (663)
T ss_pred hhcCcEEEEEECcccEEEEEE--eCC--eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcC
Confidence 345579999999999999999 544 678999999999999999996 468999999999999999999999999999
Q ss_pred CCchhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHH
Q 004058 100 KPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKG 179 (776)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~ 179 (776)
+.+.+.........+||.++.+.++.+.+.+. +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||++
T Consensus 114 ~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 192 (663)
T PTZ00400 114 RRYDEDATKKEQKILPYKIVRASNGDAWIEAQ-GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQA 192 (663)
T ss_pred CCcCcHHHHhhhccCCeEEEecCCCceEEEEC-CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHH
Confidence 97655444445567999999988888888875 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeec
Q 004058 180 LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (776)
Q Consensus 180 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (776)
+++||++|||++++||+||+|||++|+... ..++++|||||||||||+|++++. .+.++|+++.|
T Consensus 193 ~~~Aa~~AGl~v~~li~EptAAAlay~~~~---~~~~~vlV~DlGgGT~DvSv~~~~------------~g~~~v~a~~g 257 (663)
T PTZ00400 193 TKDAGKIAGLDVLRIINEPTAAALAFGMDK---NDGKTIAVYDLGGGTFDISILEIL------------GGVFEVKATNG 257 (663)
T ss_pred HHHHHHHcCCceEEEeCchHHHHHHhcccc---CCCcEEEEEeCCCCeEEEEEEEec------------CCeeEEEeccc
Confidence 999999999999999999999999999865 345799999999999999999764 67899999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEee
Q 004058 260 DAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSIT 335 (776)
Q Consensus 260 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~it 335 (776)
+.++||++||++|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.||
T Consensus 258 d~~LGG~d~D~~l~~~l~~~f~~~--~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~it 335 (663)
T PTZ00400 258 NTSLGGEDFDQRILNYLIAEFKKQ--QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLS 335 (663)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhh--cCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEEC
Confidence 999999999999999999999988 778888899999999999999999999999999999877654 47899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHH
Q 004058 336 RQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa 415 (776)
|++|+++|+|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+
T Consensus 336 R~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~-~~~~~~npdeaVA~GAAi~aa 414 (663)
T PTZ00400 336 RAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGK-EPSKGVNPDEAVAMGAAIQAG 414 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCC-CcccCCCCccceeeccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 567899999999999999999
Q ss_pred HhcCCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCC
Q 004058 416 NLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPP 491 (776)
Q Consensus 416 ~ls~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~ 491 (776)
.+++. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|++. +.+.|.| |+|++.++.
T Consensus 415 ~l~~~--~-~~~~~~dv~p~slgi~~~~g~~-------~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i-~ege~~~~~ 483 (663)
T PTZ00400 415 VLKGE--I-KDLLLLDVTPLSLGIETLGGVF-------TRLINRNTTIPTKKSQVFSTAADNQTQVGIKV-FQGEREMAA 483 (663)
T ss_pred hhcCC--c-cceEEEeccccceEEEecCCee-------EEEEecCccCCccceeeeeeccCCCceEEEEE-EEecCccCC
Confidence 99874 3 6789999999999999887755 389999999999999999875 3588888 999988776
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCc
Q 004058 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (776)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (776)
.|..||+|.|.|+++.+ .| .+ .|+|+|.+|.||+|+|...+..
T Consensus 484 --~n~~lg~~~i~~i~~~~-----~g--~~-~i~v~f~id~~Gil~v~a~~~~--------------------------- 526 (663)
T PTZ00400 484 --DNKLLGQFDLVGIPPAP-----RG--VP-QIEVTFDVDANGIMNISAVDKS--------------------------- 526 (663)
T ss_pred --cCceeEEEEEcCCCCCC-----CC--Cc-eEEEEEEECCCCCEEEEEEecc---------------------------
Confidence 58899999999998875 23 45 8999999999999987643210
Q ss_pred hhhhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHH
Q 004058 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (776)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~ 651 (776)
++ + +.+++++. ..+||.++
T Consensus 527 ----------~~------------------------------------------~----~~~~~i~~-----~~~ls~~e 545 (663)
T PTZ00400 527 ----------TG------------------------------------------K----KQEITIQS-----SGGLSDEE 545 (663)
T ss_pred ----------CC------------------------------------------c----EEEEEeec-----cccccHHH
Confidence 00 0 01344431 24699999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 004058 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (776)
Q Consensus 652 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~ 731 (776)
++++++++++|..+|+.++++.++||+||+|||.+|+.|.+ +.+++++++++++.+.+++.++|||++ +.++|
T Consensus 546 i~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i 618 (663)
T PTZ00400 546 IEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSSE----DVDSI 618 (663)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHH
Confidence 99999999999999999999999999999999999999963 888999999999999999999999976 47899
Q ss_pred HHHHHHHHHhhhHHHHHHHh
Q 004058 732 QERLDVLKAIGDPVFFRFKE 751 (776)
Q Consensus 732 ~~k~~~L~~~~~pi~~R~~e 751 (776)
++++++|++++.++..++++
T Consensus 619 ~~k~~eL~~~l~~l~~k~y~ 638 (663)
T PTZ00400 619 KDKTKQLQEASWKISQQAYK 638 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987643
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.7e-95 Score=844.19 Aligned_cols=587 Identities=26% Similarity=0.464 Sum_probs=525.7
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEe-CCceEEcHhHHHhHhhCcchHHHHHHHhhCCCc
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (776)
+.+||||||||||+||++ .+| .+++++|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.+
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~ 77 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVM--EGG--EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRD 77 (627)
T ss_pred CcEEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCc
Confidence 369999999999999999 666 346999999999999999996 789999999999999999999999999999986
Q ss_pred hhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHH
Q 004058 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (776)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 182 (776)
+.++.. ...+||+++.+.+|...+.+. |..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 78 ~~~~~~--~~~~p~~~~~~~~~~~~~~~~-~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 78 EEVQKD--IKLVPYKIVKADNGDAWVEID-GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred hHHHHH--hhcCCeEEEEcCCCceEEEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 666553 347999999988888888875 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCC
Q 004058 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (776)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (776)
||++|||++++||+||+|||++|++.+. .+.++|||||||||||+|++++. .+.++++++.|+..
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~---~~~~vlV~D~GggT~dvsv~~~~------------~~~~~vla~~gd~~ 219 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK---GDEKILVYDLGGGTFDVSILEIG------------DGVFEVLSTNGDTH 219 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC---CCCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecCCCC
Confidence 9999999999999999999999998762 45899999999999999999764 67899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHHH
Q 004058 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQK 338 (776)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~e 338 (776)
+||.+||++|++|+.++|+.+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++.++.+ .++.+.|||++
T Consensus 220 lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~ 297 (627)
T PRK00290 220 LGGDDFDQRIIDYLADEFKKE--NGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAK 297 (627)
T ss_pred cChHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHH
Confidence 999999999999999999998 778888899999999999999999999999999999887643 67889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhc
Q 004058 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (776)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls 418 (776)
|+++|+++++++..+|+++|+.++++..+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+.++
T Consensus 298 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~-~~~~~~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 298 FEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGK-EPNKGVNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCC-CCCcCcCChHHHHHhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999986 677899999999999999999998
Q ss_pred CCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeeccc----ceEEEEEeecCCCCCCCCC
Q 004058 419 DGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGAT 494 (776)
Q Consensus 419 ~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~ 494 (776)
+. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|++.. .+.|.+ |+|++..+. +
T Consensus 377 ~~--~-~~~~~~d~~~~slgi~~~~~~~-------~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v-~~ge~~~~~--~ 443 (627)
T PRK00290 377 GD--V-KDVLLLDVTPLSLGIETLGGVM-------TKLIERNTTIPTKKSQVFSTAADNQPAVTIHV-LQGEREMAA--D 443 (627)
T ss_pred CC--c-cceeeeeccceEEEEEecCCeE-------EEEecCCCcCCccceEEEEecCCCcceEEEEE-EEecccccC--c
Confidence 73 4 6889999999999999877654 3899999999999999998754 478888 999987766 5
Q ss_pred CCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhh
Q 004058 495 SPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAET 574 (776)
Q Consensus 495 ~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (776)
|..||+|.|.++++.+ +| .+ .|+|+|++|.||+|+|...+..
T Consensus 444 ~~~lg~~~i~~~~~~~-----~g--~~-~i~v~f~~d~~gil~v~a~~~~------------------------------ 485 (627)
T PRK00290 444 NKSLGRFNLTGIPPAP-----RG--VP-QIEVTFDIDANGIVHVSAKDKG------------------------------ 485 (627)
T ss_pred CceEEEEEECCCCCCC-----CC--Cc-eEEEEEEECCCceEEEEEEEcc------------------------------
Confidence 8899999999998875 33 34 7999999999999987643200
Q ss_pred hhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHH
Q 004058 575 AAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVD 654 (776)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~ 654 (776)
++ + . ..+++. ...+||.+++++
T Consensus 486 -------~~------------------------------------------~--~--~~~~i~-----~~~~ls~e~i~~ 507 (627)
T PRK00290 486 -------TG------------------------------------------K--E--QSITIT-----ASSGLSDEEIER 507 (627)
T ss_pred -------CC------------------------------------------c--e--eEEEec-----cccccCHHHHHH
Confidence 00 0 0 023332 124699999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004058 655 AEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQER 734 (776)
Q Consensus 655 ~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k 734 (776)
+++++.+|..+|+.++++.++||+||+|||.+|+.|+ + +..++++++|++|.+.|++.++||+++ +.++|+++
T Consensus 508 ~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~-~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k 580 (627)
T PRK00290 508 MVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--E-LGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAK 580 (627)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--H-HhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 9999999999999999999999999999999999997 2 788999999999999999999999976 67899999
Q ss_pred HHHHHHhhhHHHHHHHh
Q 004058 735 LDVLKAIGDPVFFRFKE 751 (776)
Q Consensus 735 ~~~L~~~~~pi~~R~~e 751 (776)
+++|+++++|+..|+++
T Consensus 581 ~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 581 TEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998865
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=9.4e-95 Score=841.54 Aligned_cols=591 Identities=25% Similarity=0.446 Sum_probs=522.9
Q ss_pred CCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEe-CCceEEcHhHHHhHhhCcchHHHHHHHhhCCC
Q 004058 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH-ESTRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (776)
+..+||||||||||+||++ .+| .+++++|..|+|++||+|+|. ++++++|..|..++.++|.++++++|||||++
T Consensus 38 ~~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 113 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAM--EGG--KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRK 113 (673)
T ss_pred CCCEEEEEeCcCcEEEEEE--ECC--eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCC
Confidence 4569999999999999999 666 346999999999999999996 46899999999999999999999999999998
Q ss_pred chhhHhhHhhcCCCceEeeCCCCceEEEeC-CCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHH
Q 004058 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKID-ENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGL 180 (776)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l 180 (776)
+.+++. ....+||+++.+.++.+.+.+. .+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++
T Consensus 114 ~~d~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 191 (673)
T PLN03184 114 MSEVDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTAT 191 (673)
T ss_pred cchhhh--hhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 776543 4567899999888888888875 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecC
Q 004058 181 MQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWD 260 (776)
Q Consensus 181 ~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 260 (776)
++||++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++. .+.++|+++.|+
T Consensus 192 ~~Aa~~AGl~v~~li~EPtAAAlayg~~~---~~~~~vlV~DlGgGT~DvSi~~~~------------~~~~eVla~~gd 256 (673)
T PLN03184 192 KDAGRIAGLEVLRIINEPTAASLAYGFEK---KSNETILVFDLGGGTFDVSVLEVG------------DGVFEVLSTSGD 256 (673)
T ss_pred HHHHHHCCCCeEEEeCcHHHHHHHhhccc---CCCCEEEEEECCCCeEEEEEEEec------------CCEEEEEEecCC
Confidence 99999999999999999999999999865 235789999999999999999764 678999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeeccc----CcceEEEeeH
Q 004058 261 AELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYV----DIDFRSSITR 336 (776)
Q Consensus 261 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr 336 (776)
.++||++||+.|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++++.. +.++.+.|||
T Consensus 257 ~~LGG~dfD~~L~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 334 (673)
T PLN03184 257 THLGGDDFDKRIVDWLASNFKKD--EGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTR 334 (673)
T ss_pred CccCHHHHHHHHHHHHHHHHHhh--cCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECH
Confidence 99999999999999999999988 77888889999999999999999999999999999987653 3578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHH
Q 004058 337 QKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ 416 (776)
++|+++|+++++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+.
T Consensus 335 ~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~-~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 335 AKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGK-DPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCC-CcccccCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 5678899999999999999999
Q ss_pred hcCCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCC
Q 004058 417 LSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPG 492 (776)
Q Consensus 417 ls~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~ 492 (776)
+++. + +++.+.|++||+||+++.++.+ .+|||+|+++|++++.+|.+. ..+.|.+ |+|++.++.
T Consensus 414 ls~~--~-~~~~~~dv~p~slgi~~~~~~~-------~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i-~~ge~~~~~- 481 (673)
T PLN03184 414 LAGE--V-SDIVLLDVTPLSLGLETLGGVM-------TKIIPRNTTLPTSKSEVFSTAADGQTSVEINV-LQGEREFVR- 481 (673)
T ss_pred hccC--c-cceEEEecccccceEEecCCee-------EEEEeCCCccceecceEeeeecCCCcEEEEEE-Eeecccccc-
Confidence 9874 4 6789999999999999987654 389999999999999999875 3467777 999988776
Q ss_pred CCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCch
Q 004058 493 ATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISA 572 (776)
Q Consensus 493 ~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (776)
+|..||+|.|.++++.+ +| .+ +|+|+|++|.||+|+|...+..
T Consensus 482 -~n~~lg~~~i~~i~~~~-----~g--~~-~i~v~f~id~~GiL~V~a~~~~---------------------------- 524 (673)
T PLN03184 482 -DNKSLGSFRLDGIPPAP-----RG--VP-QIEVKFDIDANGILSVSATDKG---------------------------- 524 (673)
T ss_pred -cCceEEEEEEeCCCCCC-----CC--Cc-eEEEEEEeCCCCeEEEEEEecC----------------------------
Confidence 58999999999998875 23 34 8999999999999987743210
Q ss_pred hhhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHH
Q 004058 573 ETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEAL 652 (776)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~ 652 (776)
++ ++ ..++++ ...+||.+++
T Consensus 525 ---------t~------------------------------------------~~----~~~~i~-----~~~~ls~eei 544 (673)
T PLN03184 525 ---------TG------------------------------------------KK----QDITIT-----GASTLPKDEV 544 (673)
T ss_pred ---------CC------------------------------------------eE----EEEEec-----ccccccHHHH
Confidence 00 00 123333 1246999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 004058 653 VDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQ 732 (776)
Q Consensus 653 ~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~ 732 (776)
+++++++++|..+|+.++++.++||+||+|||++|+.|.+ +.+++++++++++.+.|++.++|||.+ +.++++
T Consensus 545 ~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e---~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 545 ERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE---LGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 9999999999999999999999999999999999999962 889999999999999999999999976 367888
Q ss_pred HHHHHHHHhhhHHHHHHHhhh
Q 004058 733 ERLDVLKAIGDPVFFRFKELT 753 (776)
Q Consensus 733 ~k~~~L~~~~~pi~~R~~e~~ 753 (776)
+++++|.+.+.++..+++...
T Consensus 618 ~~~~~l~~~l~~l~~~~~~~~ 638 (673)
T PLN03184 618 DAMAALNQEVMQIGQSLYNQP 638 (673)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888765443
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.1e-94 Score=833.62 Aligned_cols=591 Identities=24% Similarity=0.411 Sum_probs=526.6
Q ss_pred CCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCc
Q 004058 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (776)
.+.+||||||||||+||++ .+| ++++++|..|.|.+||+|+|.++++++|..|+.++..+|.++++++||+||+.+
T Consensus 26 ~~~viGIDLGTTnS~vA~~--~~~--~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~ 101 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATM--DGD--KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRF 101 (657)
T ss_pred cceEEEEEeCcCeEEEEEE--eCC--ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhcccc
Confidence 4469999999999999999 555 568999999999999999999999999999999999999999999999999976
Q ss_pred hhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHH
Q 004058 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (776)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 182 (776)
.+.........+||.++.+.++.+.+...++..++|+++.+++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 102 ~d~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~ 181 (657)
T PTZ00186 102 EDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKD 181 (657)
T ss_pred ccHHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHH
Confidence 55444445567999999888888888776678899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCC
Q 004058 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (776)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (776)
||++|||++++||+||+|||++|+... ..+.++||||+||||||+||+++. .+.++|+++.|+.+
T Consensus 182 Aa~~AGl~v~rlInEPtAAAlayg~~~---~~~~~vlV~DlGGGT~DvSil~~~------------~g~~~V~at~Gd~~ 246 (657)
T PTZ00186 182 AGTIAGLNVIRVVNEPTAAALAYGMDK---TKDSLIAVYDLGGGTFDISVLEIA------------GGVFEVKATNGDTH 246 (657)
T ss_pred HHHHcCCCeEEEEcChHHHHHHHhccC---CCCCEEEEEECCCCeEEEEEEEEe------------CCEEEEEEecCCCC
Confidence 999999999999999999999999865 235799999999999999999764 78899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHHH
Q 004058 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQK 338 (776)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~e 338 (776)
+||++||++|++|+.++|..+ ++.|+..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++
T Consensus 247 LGG~DfD~~l~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~e 324 (657)
T PTZ00186 247 LGGEDFDLALSDYILEEFRKT--SGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSK 324 (657)
T ss_pred CCchhHHHHHHHHHHHHHhhh--cCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHH
Confidence 999999999999999999988 788888889999999999999999999999999999876542 45889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhc
Q 004058 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLS 418 (776)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls 418 (776)
|+++|+++++++..+++++|+++++++.+|+.|+||||+||||.|+++|+++||. .+...+|||||||+|||++|+.++
T Consensus 325 fe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~-~~~~~~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQK-DPFRGVNPDEAVALGAATLGGVLR 403 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCC-CccccCCCchHHHHhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999986 456789999999999999999998
Q ss_pred CCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCCCC
Q 004058 419 DGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGAT 494 (776)
Q Consensus 419 ~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~ 494 (776)
+. + +++.+.|++|++||+++.++.+ .+|||+|++||++++..|++. ..+.|.| |+|++.++. +
T Consensus 404 ~~--~-~~~~l~Dv~p~slgie~~~g~~-------~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i-~qGe~~~~~--~ 470 (657)
T PTZ00186 404 GD--V-KGLVLLDVTPLSLGIETLGGVF-------TRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV-FQGEREMAA--D 470 (657)
T ss_pred cc--c-CceEEEeeccccccceecCCEE-------EEEEeCCCEeeEEEeeccccccCCCceEEEEE-EEecccccc--c
Confidence 75 3 6789999999999999987765 389999999999999999875 3588999 999998877 6
Q ss_pred CCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhh
Q 004058 495 SPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAET 574 (776)
Q Consensus 495 ~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (776)
|..||+|.+.|+|+++ +| .| .|+|+|++|.||+|+|+..+...
T Consensus 471 n~~lg~~~l~~ip~~~-----~G--~~-~I~Vtf~iD~nGiL~V~a~d~~t----------------------------- 513 (657)
T PTZ00186 471 NQMMGQFDLVGIPPAP-----RG--VP-QIEVTFDIDANGICHVTAKDKAT----------------------------- 513 (657)
T ss_pred ccccceEEEcCCCCCC-----CC--CC-cEEEEEEEcCCCEEEEEEEEccC-----------------------------
Confidence 8999999999999876 34 45 89999999999999876443210
Q ss_pred hhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHH
Q 004058 575 AAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVD 654 (776)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~ 654 (776)
+. ...++++. ...||++++++
T Consensus 514 --------g~----------------------------------------------~~~~~i~~-----~~~ls~~~i~~ 534 (657)
T PTZ00186 514 --------GK----------------------------------------------TQNITITA-----NGGLSKEQIEQ 534 (657)
T ss_pred --------Cc----------------------------------------------EEEEEecc-----CccCCHHHHHH
Confidence 00 00344431 23599999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 004058 655 AEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQER 734 (776)
Q Consensus 655 ~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k 734 (776)
+.+.++++..+|+.++++.+++|++|+++|.++..+.+. ..+++++++.+.+.+...++||.. .+.+.++++++
T Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 608 (657)
T PTZ00186 535 MIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW----KYVSDAEKENVKTLVAELRKAMEN--PNVAKDDLAAA 608 (657)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHH
Confidence 999999999999999999999999999999999999642 347899999999999999999973 35578999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 004058 735 LDVLKAIGDPVFFRFK 750 (776)
Q Consensus 735 ~~~L~~~~~pi~~R~~ 750 (776)
+++|++.+.++..++.
T Consensus 609 ~~~l~~~~~~~~~~~~ 624 (657)
T PTZ00186 609 TDKLQKAVMECGRTEY 624 (657)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.2e-93 Score=831.42 Aligned_cols=584 Identities=25% Similarity=0.463 Sum_probs=520.2
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeC-CceEEcHhHHHhHhhCcchHHHHHHHhhCCCch
Q 004058 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (776)
.+||||||||||+||++ .+| . .++++|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++||+||+.++
T Consensus 1 ~viGIDlGtt~s~va~~--~~g-~-~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~ 76 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVM--EGG-E-PVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD 76 (595)
T ss_pred CEEEEEeCcccEEEEEE--ECC-E-EEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch
Confidence 37999999999999999 666 3 468899999999999999974 589999999999999999999999999999886
Q ss_pred hhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 004058 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (776)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 183 (776)
+++.. ...+||. +...++.+.+.+. +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 77 ~~~~~--~~~~~~~-v~~~~~~~~~~v~-~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~A 152 (595)
T TIGR02350 77 EVTEE--AKRVPYK-VVGDGGDVRVKVD-GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDA 152 (595)
T ss_pred HHHHH--hhcCCee-EEcCCCceEEEEC-CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 65543 3578898 5566888888886 478999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCC
Q 004058 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (776)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l 263 (776)
|++|||++++||+||+|||++|+..+. ..+.++|||||||||||+|++++. .+.++++++.|+..+
T Consensus 153 a~~AGl~v~~li~EptAAAl~y~~~~~--~~~~~vlV~D~Gggt~dvsv~~~~------------~~~~~v~~~~gd~~l 218 (595)
T TIGR02350 153 GKIAGLEVLRIINEPTAAALAYGLDKS--KKDEKILVFDLGGGTFDVSILEIG------------DGVFEVLSTAGDTHL 218 (595)
T ss_pred HHHcCCceEEEecchHHHHHHHhhccc--CCCcEEEEEECCCCeEEEEEEEec------------CCeEEEEEecCCccc
Confidence 999999999999999999999988652 346899999999999999999764 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEeeHHHH
Q 004058 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSITRQKF 339 (776)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~ef 339 (776)
||.+||+.|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|
T Consensus 219 GG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~f 296 (595)
T TIGR02350 219 GGDDFDQRIIDWLADEFKKE--EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKF 296 (595)
T ss_pred CchhHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHH
Confidence 99999999999999999988 778888889999999999999999999999999999877543 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcC
Q 004058 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (776)
Q Consensus 340 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~ 419 (776)
+++++|+++++..+|+++|+.+++++.+|+.|+||||+||+|+|++.|+++||. .+..++|||+|||+|||++|+.+++
T Consensus 297 e~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~-~~~~~~~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 297 EELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGK-EPNKSVNPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCC-cccCCcCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999995 6788999999999999999999987
Q ss_pred CccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeeccc----ceEEEEEeecCCCCCCCCCC
Q 004058 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATS 495 (776)
Q Consensus 420 ~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~~ 495 (776)
. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|++.. .+.+.+ |+|++..+. +|
T Consensus 376 ~--~-~~~~~~d~~~~~igi~~~~~~~-------~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i-~~ge~~~~~--~~ 442 (595)
T TIGR02350 376 D--V-KDVLLLDVTPLSLGIETLGGVM-------TKLIERNTTIPTKKSQVFSTAADNQPAVDIHV-LQGERPMAA--DN 442 (595)
T ss_pred C--c-ccceeeecccceeEEEecCCce-------EEEEeCCCcCCccceEeeeccCCCCcEEEEEE-Eeecccccc--cC
Confidence 6 4 7889999999999999877654 3899999999999999998754 467888 999988776 58
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhhh
Q 004058 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (776)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (776)
..||+|.|.++++.+ +| .+ +|+|+|++|.||+|+|...+...
T Consensus 443 ~~lg~~~i~~~~~~~-----~g--~~-~i~v~f~~d~~G~l~v~~~~~~~------------------------------ 484 (595)
T TIGR02350 443 KSLGRFELTGIPPAP-----RG--VP-QIEVTFDIDANGILHVSAKDKGT------------------------------ 484 (595)
T ss_pred cEeEEEEECCCCCCC-----CC--Cc-eEEEEEEEcCCCeEEEEEEEccC------------------------------
Confidence 899999999998775 23 34 89999999999999887443100
Q ss_pred hhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 004058 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (776)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~ 655 (776)
+ ++ ..++++. ..+||.++++++
T Consensus 485 -------~------------------------------------------~~----~~~~i~~-----~~~ls~~~~~~~ 506 (595)
T TIGR02350 485 -------G------------------------------------------KE----QSITITA-----SSGLSEEEIERM 506 (595)
T ss_pred -------C------------------------------------------ce----EEEEecc-----ccccCHHHHHHH
Confidence 0 00 0233331 246999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004058 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (776)
Q Consensus 656 ~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~ 735 (776)
++++.++..+|+.++++.++||.||+|||.+|+.|++ +.+++++++++++.+.+++.++|||++ +.++|++++
T Consensus 507 ~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~---~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~ 579 (595)
T TIGR02350 507 VKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE---AGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKT 579 (595)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999963 578899999999999999999999975 578999999
Q ss_pred HHHHHhhhHHHHHH
Q 004058 736 DVLKAIGDPVFFRF 749 (776)
Q Consensus 736 ~~L~~~~~pi~~R~ 749 (776)
++|+++++++..++
T Consensus 580 ~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 580 EELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.7e-93 Score=829.57 Aligned_cols=588 Identities=25% Similarity=0.441 Sum_probs=523.8
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeC-CceEEcHhHHHhHhhCcchHHHHHHHhhCCCc
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (776)
+.+||||||||||+||++ .+| .+.+++|..|+|.+||+|+|.+ +++++|..|+.++..+|.++++++||+||+.+
T Consensus 2 ~~viGIDlGTt~s~va~~--~~g--~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~ 77 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVM--EGG--KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKF 77 (621)
T ss_pred CceEEEEeCcccEEEEEE--ECC--EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCCh
Confidence 469999999999999999 666 3568999999999999999964 68999999999999999999999999999987
Q ss_pred hhhHhhHhhcCCCceEeeCCCCceEEEeCC-CccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHH
Q 004058 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDE-NNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (776)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~ 181 (776)
.++... ...+||.+..+.+|.+.+.+.. +..++|+++++++|+++++.|+.+++.++.++|||||++|++.||++++
T Consensus 78 ~~~~~~--~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~ 155 (621)
T CHL00094 78 SEISEE--AKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATK 155 (621)
T ss_pred HHHHhh--hhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 765543 3468999998888888887643 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCC
Q 004058 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (776)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (776)
+||++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++. .+.++++++.|+.
T Consensus 156 ~Aa~~AGl~v~~li~EptAAAlay~~~~---~~~~~vlV~DlGgGT~DvSv~~~~------------~~~~~vla~~gd~ 220 (621)
T CHL00094 156 DAGKIAGLEVLRIINEPTAASLAYGLDK---KNNETILVFDLGGGTFDVSILEVG------------DGVFEVLSTSGDT 220 (621)
T ss_pred HHHHHcCCceEEEeccHHHHHHHhcccc---CCCCEEEEEEcCCCeEEEEEEEEc------------CCEEEEEEEecCC
Confidence 9999999999999999999999998865 235789999999999999999764 6789999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeeccc----CcceEEEeeHH
Q 004058 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYV----DIDFRSSITRQ 337 (776)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~ 337 (776)
.+||++||+.|++|+.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++.+.. +.++...|||+
T Consensus 221 ~lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (621)
T CHL00094 221 HLGGDDFDKKIVNWLIKEFKKK--EGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRA 298 (621)
T ss_pred CcChHHHHHHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHH
Confidence 9999999999999999999998 78888889999999999999999999999999999987754 25788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHh
Q 004058 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (776)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~l 417 (776)
+|+++++++++++..+|+++|+.+++.+.+|+.|+||||+||+|.|++.|+++||. .+..++|||+|||+|||++|+.+
T Consensus 299 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~-~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK-KPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCC-CcCcCCCchhHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999986 67789999999999999999999
Q ss_pred cCCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCCC
Q 004058 418 SDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGA 493 (776)
Q Consensus 418 s~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~ 493 (776)
++. + +++.+.|++|++||+++.++.+ .+|||+|+++|++++.+|++. ..+.+.+ |+|++.++.
T Consensus 378 s~~--~-~~~~~~d~~~~~lgi~~~~~~~-------~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i-~~ge~~~~~-- 444 (621)
T CHL00094 378 AGE--V-KDILLLDVTPLSLGVETLGGVM-------TKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHV-LQGERELAK-- 444 (621)
T ss_pred cCC--c-cceeeeeeeceeeeeeccCCEE-------EEEEeCCCccceeeeEEEEeccCCCcEEEEEE-EeeccccCC--
Confidence 873 4 6789999999999999877654 389999999999999999863 4688888 999988876
Q ss_pred CCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchh
Q 004058 494 TSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAE 573 (776)
Q Consensus 494 ~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (776)
+|..||+|.|.|+++.+ .| .+ +|+|+|++|.||+|+|+..+..
T Consensus 445 ~n~~lg~~~i~~~~~~~-----~g--~~-~i~v~f~id~~Gil~v~~~~~~----------------------------- 487 (621)
T CHL00094 445 DNKSLGTFRLDGIPPAP-----RG--VP-QIEVTFDIDANGILSVTAKDKG----------------------------- 487 (621)
T ss_pred CCCEEEEEEEeCCCCCC-----CC--CC-cEEEEEEECCCCeEEEEEeecc-----------------------------
Confidence 58999999999998765 23 34 7999999999999988744210
Q ss_pred hhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHH
Q 004058 574 TAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALV 653 (776)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~ 653 (776)
++ +. ..+++. ...+||.++++
T Consensus 488 --------t~------------------------------------------~~----~~~~i~-----~~~~ls~~~i~ 508 (621)
T CHL00094 488 --------TG------------------------------------------KE----QSITIQ-----GASTLPKDEVE 508 (621)
T ss_pred --------CC------------------------------------------ce----eeeeec-----cchhccHHHHH
Confidence 00 00 022332 12469999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q 004058 654 DAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQE 733 (776)
Q Consensus 654 ~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~ 733 (776)
++++++.+|..+|+.++++.++||.||+|||.+|++|++ +..++++++|+++.+.+++.++|||+++ .++|++
T Consensus 509 ~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~~~~~~ 581 (621)
T CHL00094 509 RMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQNDN----YESIKS 581 (621)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcCC----HHHHHH
Confidence 999999999999999999999999999999999999973 7889999999999999999999999874 589999
Q ss_pred HHHHHHHhhhHHHHHHHh
Q 004058 734 RLDVLKAIGDPVFFRFKE 751 (776)
Q Consensus 734 k~~~L~~~~~pi~~R~~e 751 (776)
++++|+.+++|+..+++.
T Consensus 582 ~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 582 LLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999987655
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=5.6e-91 Score=803.22 Aligned_cols=579 Identities=23% Similarity=0.356 Sum_probs=513.0
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeC-CceEEcHhHHHhHhhCcchHHHHHHHhhCCCchh
Q 004058 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE-STRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (776)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (776)
+||||||||||+||++ .+| .++++.|..|++.+||+|+|.+ +++++|..|+.++.++|.++++++||+||+.+.+
T Consensus 1 ~iGIDlGTtns~va~~--~~g--~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d 76 (599)
T TIGR01991 1 AVGIDLGTTNSLVASV--RSG--VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIED 76 (599)
T ss_pred CEEEEEccccEEEEEE--ECC--EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccc
Confidence 5899999999999999 666 4679999999999999999975 4899999999999999999999999999998766
Q ss_pred hHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 004058 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA 184 (776)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 184 (776)
++. ...+||.++...+|.+.+.+.++ .++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 77 IKT---FSILPYRFVDGPGEMVRLRTVQG-TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred hhh---cccCCEEEEEcCCCceEEEeCCC-EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 553 45789999888888899988764 79999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCc
Q 004058 185 ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG 264 (776)
Q Consensus 185 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lG 264 (776)
++|||++++||+||+|||++|++... .+.++||||+||||||+|++++. .+.+++++++|+..+|
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~---~~~~vlV~DlGgGT~DvSi~~~~------------~~~~~vla~~gd~~lG 217 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKA---SEGIYAVYDLGGGTFDVSILKLT------------KGVFEVLATGGDSALG 217 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccC---CCCEEEEEEcCCCeEEEEEEEEc------------CCeEEEEEEcCCCCCC
Confidence 99999999999999999999998752 45789999999999999999764 6789999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHH
Q 004058 265 GQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCE 344 (776)
Q Consensus 265 G~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~ 344 (776)
|++||+.|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+.++.+.++. ++.++.++|||++|+++++
T Consensus 218 G~d~D~~l~~~l~~~~------~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~ 289 (599)
T TIGR01991 218 GDDFDHALAKWILKQL------GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQ 289 (599)
T ss_pred HHHHHHHHHHHHHHhh------CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHH
Confidence 9999999999999764 3444567899999999999999999999999888874 7889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCcccc
Q 004058 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKLN 424 (776)
Q Consensus 345 ~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~~~~ 424 (776)
|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++|+. .+..++|||+|||+|||++|+.+++.++.
T Consensus 290 ~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~-~~~~~~npdeaVA~GAai~a~~l~~~~~~- 367 (599)
T TIGR01991 290 PLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-EPLTDIDPDQVVALGAAIQADLLAGNRIG- 367 (599)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCC-CCCCCCCCcHHHHHHHHHHHHHhcccccc-
Confidence 9999999999999999999999999999999999999999999999987 45678999999999999999999988877
Q ss_pred CcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCCCCCCceeE
Q 004058 425 RKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATSPVFAK 500 (776)
Q Consensus 425 ~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~~~~i~~ 500 (776)
+++.+.|++|++||+++.++.+ .+|||+|+++|++++..|++. ..+.+.+ |+|++.++. +|..||+
T Consensus 368 ~~~~l~dv~p~slgi~~~~g~~-------~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i-~qGe~~~~~--~n~~lg~ 437 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETMGGLV-------EKIIPRNTPIPVARAQEFTTYKDGQTAMVIHV-VQGERELVE--DCRSLAR 437 (599)
T ss_pred CceEEEEeeeeeeEEEecCCEE-------EEEEeCCCcCCccceEEEEEccCCCeEEEEEE-Eeecccccc--cCceEEE
Confidence 7899999999999999987755 389999999999999999764 3478888 999988877 5899999
Q ss_pred EEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhhhhhccc
Q 004058 501 YAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNMT 580 (776)
Q Consensus 501 ~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (776)
|.|.|+++.+ .| .+ +|+|+|++|.||+|+|+..+...
T Consensus 438 ~~l~~i~~~~-----~g--~~-~i~v~f~id~~gil~V~a~~~~t----------------------------------- 474 (599)
T TIGR01991 438 FELRGIPPMV-----AG--AA-RIRVTFQVDADGLLTVSAQEQST----------------------------------- 474 (599)
T ss_pred EEEcCCCCCC-----CC--CC-cEEEEEEECCCCeEEEEEEECCC-----------------------------------
Confidence 9999999865 23 45 89999999999999876432100
Q ss_pred ccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHHH
Q 004058 581 VEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKLE 660 (776)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~~ 660 (776)
+ +++ .+.+.. ...||+++++++.+++.
T Consensus 475 --~------------------------------------------~~~----~~~i~~-----~~~l~~~~i~~~~~~~~ 501 (599)
T TIGR01991 475 --G------------------------------------------VEQ----SIQVKP-----SYGLSDEEIERMLKDSF 501 (599)
T ss_pred --C------------------------------------------cEE----EEeccc-----ccCCCHHHHHHHHHHHH
Confidence 0 000 123321 23599999999999999
Q ss_pred HhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004058 661 ELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKA 740 (776)
Q Consensus 661 ~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~ 740 (776)
++..+|+.++++.+++|++|+|+|.++..+.+ +..++++++|+++...+++.++||+++ +.++++++.++|++
T Consensus 502 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~ 574 (599)
T TIGR01991 502 KHAEEDMYARALAEQKVEAERILEALQAALAA---DGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEE 574 (599)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999964 456789999999999999999999866 47899999999999
Q ss_pred hhhHHHHHHH
Q 004058 741 IGDPVFFRFK 750 (776)
Q Consensus 741 ~~~pi~~R~~ 750 (776)
++.++..+..
T Consensus 575 ~~~~~~~~~~ 584 (599)
T TIGR01991 575 ATDNFAARRM 584 (599)
T ss_pred HHHHHHHHHH
Confidence 9999886443
No 14
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-93 Score=782.18 Aligned_cols=603 Identities=30% Similarity=0.524 Sum_probs=549.1
Q ss_pred CCCCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCC
Q 004058 21 HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGK 100 (776)
Q Consensus 21 ~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~ 100 (776)
...+.++|||||||+++++++ .. ..++++.|.+|+|.+||+|+|.+.++++|.+|..+...+|.++++++||++|+
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~--~~--~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr 79 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVY--QS--GKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGR 79 (620)
T ss_pred ccccceeeEeccCccceeeeE--cC--CcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCc
Confidence 456789999999999999999 54 46789999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhhHhhcCCCceEeeCCCCceEEEeC--CC-ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHH
Q 004058 101 PFKQVKHLIDSLYLPFNVVEDSRGAVSFKID--EN-NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAER 177 (776)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR 177 (776)
.+++.......++|||.+..+.++.+.+.+. ++ +.++|+++.+++|.++++.++.+++..+.++|+|||+||+..||
T Consensus 80 ~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr 159 (620)
T KOG0101|consen 80 FFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQR 159 (620)
T ss_pred cccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHH
Confidence 8877777778889999998655555665554 33 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEe
Q 004058 178 KGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDV 257 (776)
Q Consensus 178 ~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (776)
+++.+|+.+|||+++++|+||+||||+|++.+. .....+|+|+|+||||||++++.+ ..|.+.++++
T Consensus 160 ~at~~A~~iaGl~vlrii~EPtAaalAygl~k~-~~~~~~VlI~DlGggtfdvs~l~i------------~gG~~~vkat 226 (620)
T KOG0101|consen 160 AATKDAALIAGLNVLRIINEPTAAALAYGLDKK-VLGERNVLIFDLGGGTFDVSVLSL------------EGGIFEVKAT 226 (620)
T ss_pred HHHHHHHHhcCCceeeeecchHHHHHHhhcccc-ccceeeEEEEEcCCCceeeeeEEe------------ccchhhhhhh
Confidence 999999999999999999999999999998775 345688999999999999999954 3678899999
Q ss_pred ecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHH
Q 004058 258 RWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQ 337 (776)
Q Consensus 258 ~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~ 337 (776)
.++.++||.+||+.|++|+..+|+.+ ++.++..+++++.||+.+||++|+.||...++.+.|++|+++.||...|||.
T Consensus 227 ~gd~~lGGedf~~~l~~h~~~ef~~k--~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itra 304 (620)
T KOG0101|consen 227 AGDTHLGGEDFDNKLVNHFAAEFKRK--AGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRA 304 (620)
T ss_pred cccccccchhhhHHHHHHHHHHHHHh--hccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehh
Confidence 99999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHh
Q 004058 338 KFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANL 417 (776)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~l 417 (776)
+|+.++.+++.++..+++.+|++++++..+|+.|+||||++|+|.+|..++++|+.+.+...+||||+||+|||++||.+
T Consensus 305 rfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 305 RFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCc--cccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeeccc----ceEEEEEeecCCCCCC
Q 004058 418 SDGI--KLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPP 491 (776)
Q Consensus 418 s~~~--~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~ 491 (776)
++.. .+ .++.+.|+.|.++||+..++.|. ++|++++.+|++++.+|++.. .+.+.+ |+|++.+..
T Consensus 385 ~g~~~~~~-~~l~lid~~pl~~gve~a~~~~~-------~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~V-yEger~~~k 455 (620)
T KOG0101|consen 385 SGDKSLNI-QDLLLIDVAPLSLGVETAGGVFT-------VLIPRNTSIPTKKTQTFTTYSDNQPGVLIQV-YEGERAMTK 455 (620)
T ss_pred cCCccccc-cceeeeecccccccccccCCcce-------eeeecccccceeeeeeeeeecCCCCceeEEE-Eeccccccc
Confidence 9743 44 78999999999999999998774 999999999999999998754 578888 999988877
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCc
Q 004058 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (776)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (776)
+|..+|.|.+.||++++ +| +| .|+++|.+|.||+|.|+..+...
T Consensus 456 --dn~~lg~feL~gippap-----rg--vp-~IevtfdiD~ngiL~Vta~d~st-------------------------- 499 (620)
T KOG0101|consen 456 --DNNLLGKFELTGIPPAP-----RG--VP-QIEVTFDIDANGILNVTAVDKST-------------------------- 499 (620)
T ss_pred --cccccceeeecCCCccc-----cC--Cc-ceeEEEecCCCcEEEEeeccccC--------------------------
Confidence 68999999999999997 44 67 99999999999999877554210
Q ss_pred hhhhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHH
Q 004058 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (776)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~ 651 (776)
+++ -.|++++ ..+.||.++
T Consensus 500 -----------gK~----------------------------------------------~~i~i~n----~~grls~~~ 518 (620)
T KOG0101|consen 500 -----------GKE----------------------------------------------NKITITN----DKGRLSKEE 518 (620)
T ss_pred -----------Ccc----------------------------------------------ceEEEec----ccceeehhh
Confidence 000 0355553 256799999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 004058 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (776)
Q Consensus 652 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~ 731 (776)
+++|....+.+..+|...+.+.+++|.||+|+|+++..+++.. ..++++++.++.++|.++.+||+.+ +.+.+++|
T Consensus 519 Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~---~~i~~~~~~~~~~~~~~~i~wl~~~-~~~~~~e~ 594 (620)
T KOG0101|consen 519 IERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK---GKINEEDKQKILDKCNEVINWLDKN-QLAEKEEF 594 (620)
T ss_pred hhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc---cccChhhhhhHHHHHHHHHHHhhhc-ccccccHH
Confidence 9999999999999999999999999999999999999998752 7899999999999999999999998 46779999
Q ss_pred HHHHHHHHHhhhHHHHHHHhh
Q 004058 732 QERLDVLKAIGDPVFFRFKEL 752 (776)
Q Consensus 732 ~~k~~~L~~~~~pi~~R~~e~ 752 (776)
++|.++|+..+.||..+++..
T Consensus 595 e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 595 EHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHhhccHHHHhhhcc
Confidence 999999999999999998766
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.3e-89 Score=793.34 Aligned_cols=578 Identities=22% Similarity=0.349 Sum_probs=508.8
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCch
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (776)
..+||||||||||+||++ .+| ..++++|..|++.+||+|+|.+++++||..|..++.++|.++++++||+||+.+.
T Consensus 19 ~~~iGIDlGTt~s~va~~--~~g--~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 94 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATV--RSG--QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLA 94 (616)
T ss_pred CeEEEEEeccccEEEEEE--ECC--EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCch
Confidence 468999999999999999 666 3578999999999999999988889999999999999999999999999999876
Q ss_pred hhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 004058 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (776)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 183 (776)
+++. ....+||.+....+|.+.+.+.++ .++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|
T Consensus 95 d~~~--~~~~~~~~~~~~~~g~~~~~~~~~-~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 171 (616)
T PRK05183 95 DIQQ--RYPHLPYQFVASENGMPLIRTAQG-LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDA 171 (616)
T ss_pred hhhh--hhhcCCeEEEecCCCceEEEecCC-eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 6543 234689998887788888888654 7999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCC
Q 004058 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (776)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l 263 (776)
|++|||++++||+||+|||++|++.. ..++++||||+||||||+|++++. .+.+++++++|+.++
T Consensus 172 a~~AGl~v~~li~EPtAAAlay~~~~---~~~~~vlV~DlGGGT~DvSv~~~~------------~~~~evlat~gd~~l 236 (616)
T PRK05183 172 ARLAGLNVLRLLNEPTAAAIAYGLDS---GQEGVIAVYDLGGGTFDISILRLS------------KGVFEVLATGGDSAL 236 (616)
T ss_pred HHHcCCCeEEEecchHHHHHHhhccc---CCCCEEEEEECCCCeEEEEEEEee------------CCEEEEEEecCCCCc
Confidence 99999999999999999999998865 235789999999999999999764 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHH
Q 004058 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELC 343 (776)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~ 343 (776)
||.+||+.|++|+.++|+. +...+++++.+|+.+||++|+.||.+.++.+.++.+ ...|||++|++++
T Consensus 237 GG~d~D~~l~~~~~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~ 304 (616)
T PRK05183 237 GGDDFDHLLADWILEQAGL------SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALI 304 (616)
T ss_pred CHHHHHHHHHHHHHHHcCC------CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHH
Confidence 9999999999999988643 334578999999999999999999999988888532 2259999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCccc
Q 004058 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKL 423 (776)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~~~ 423 (776)
+++++++..+++++|+++++.+.+|+.|+||||+||+|+|++.|+++||.. +..++|||+|||+|||++|+.+++.+..
T Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~-~~~~~npdeaVA~GAAi~a~~l~~~~~~ 383 (616)
T PRK05183 305 APLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRT-PLTSIDPDKVVAIGAAIQADILAGNKPD 383 (616)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccC-cCcCCCchHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999974 4578999999999999999999988776
Q ss_pred cCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCCCCCCcee
Q 004058 424 NRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATSPVFA 499 (776)
Q Consensus 424 ~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~~~~i~ 499 (776)
+++.+.|++|++||+++.++.+ .+|||+|+++|++++..|++. ..+.+.+ |+|++.++. +|..||
T Consensus 384 -~~~~l~dv~p~slgi~~~~g~~-------~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v-~qGe~~~~~--~n~~lg 452 (616)
T PRK05183 384 -SDMLLLDVIPLSLGLETMGGLV-------EKIIPRNTTIPVARAQEFTTFKDGQTAMAIHV-VQGERELVA--DCRSLA 452 (616)
T ss_pred -CceEEEeeccccccceecCCeE-------EEEEeCCCcccccccEEEEeccCCCeEEEEEE-ecccccccc--cccEEE
Confidence 7899999999999999887755 389999999999999999764 3588888 999998887 588999
Q ss_pred EEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhhhhhcc
Q 004058 500 KYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNM 579 (776)
Q Consensus 500 ~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (776)
+|.|.|+++.+ .| .+ +|+|+|++|.||+|+|+..+...
T Consensus 453 ~~~i~~i~~~~-----~g--~~-~i~v~f~~d~~Gil~V~a~~~~~---------------------------------- 490 (616)
T PRK05183 453 RFELRGIPPMA-----AG--AA-RIRVTFQVDADGLLSVTAMEKST---------------------------------- 490 (616)
T ss_pred EEEeCCCCCCC-----CC--Cc-cEEEEEEECCCCeEEEEEEEcCC----------------------------------
Confidence 99999999875 33 34 89999999999999877332100
Q ss_pred cccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHH
Q 004058 580 TVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKL 659 (776)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~ 659 (776)
+ + ..++.++. ...||+++++++.+++
T Consensus 491 ---~------------------------------------------~----~~~~~i~~-----~~~ls~~~i~~~~~~~ 516 (616)
T PRK05183 491 ---G------------------------------------------V----EASIQVKP-----SYGLTDDEIARMLKDS 516 (616)
T ss_pred ---C------------------------------------------c----EEEecccc-----cccCCHHHHHHHHHHH
Confidence 0 0 00233321 2359999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004058 660 EELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLK 739 (776)
Q Consensus 660 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~ 739 (776)
.++..+|+..+++.+++|++|+|+|.+++.+.+ ....+++++|+++...+++.++||..+ +.+++++++++|+
T Consensus 517 ~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l~ 589 (616)
T PRK05183 517 MSHAEEDMQARALAEQKVEAERVLEALQAALAA---DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKALD 589 (616)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999964 236689999999999999999999754 6789999999999
Q ss_pred HhhhHHHHHHH
Q 004058 740 AIGDPVFFRFK 750 (776)
Q Consensus 740 ~~~~pi~~R~~ 750 (776)
+++.++..+..
T Consensus 590 ~~~~~~~~~~~ 600 (616)
T PRK05183 590 KATQEFAARRM 600 (616)
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.5e-89 Score=803.30 Aligned_cols=592 Identities=36% Similarity=0.628 Sum_probs=514.0
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCchhh
Q 004058 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQV 105 (776)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~~ 105 (776)
||||||||+||+||++ .+| .++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|+|||+.+.+.
T Consensus 1 viGID~Gt~~~~va~~--~~~--~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~ 76 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVF--KNG--KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDP 76 (602)
T ss_dssp EEEEEE-SSEEEEEEE--ETT--EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSH
T ss_pred CEEEEeccCCEEEEEE--Eec--cccccccccccccccceeeEeeecccCCcchhhhccccccccccccccccccccccc
Confidence 7999999999999999 655 578999999999999999999999999999999999999999999999999966543
Q ss_pred HhhHhhcCCCceEeeCCCCceEEEeC-CC--ccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHH
Q 004058 106 KHLIDSLYLPFNVVEDSRGAVSFKID-EN--NNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (776)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 182 (776)
........+||.+..+++|.+.+.+. .| ..++|+++++++|+++++.++.+++..+.++|||||++|++.||+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~ 156 (602)
T PF00012_consen 77 DVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRD 156 (602)
T ss_dssp HHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHH
T ss_pred ccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccc
Confidence 33345567899999887888877765 23 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCC
Q 004058 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (776)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (776)
||++|||++++||+||+|||++|++.+.. .++++|||||||||+|++++++. .+.++++++.++..
T Consensus 157 Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~------------~~~~~v~~~~~~~~ 222 (602)
T PF00012_consen 157 AAELAGLNVLRLINEPTAAALAYGLERSD--KGKTVLVVDFGGGTFDVSVVEFS------------NGQFEVLATAGDNN 222 (602)
T ss_dssp HHHHTT-EEEEEEEHHHHHHHHTTTTSSS--SEEEEEEEEEESSEEEEEEEEEE------------TTEEEEEEEEEETT
T ss_pred cccccccccceeecccccccccccccccc--cccceeccccccceEeeeehhcc------------cccccccccccccc
Confidence 99999999999999999999999887643 56899999999999999999774 67899999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccC--CCceeEEEeeccc-CcceEEEeeHHHH
Q 004058 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSA--NTMAPISVESLYV-DIDFRSSITRQKF 339 (776)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~--~~~~~i~i~~l~~-~~d~~~~itr~ef 339 (776)
+||++||.+|++|+.++|+.+ ++.++..+++.+.+|+.+||++|+.||. +.+..+.++++.+ |.++.+.|||++|
T Consensus 223 lGG~~~D~~l~~~~~~~~~~~--~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~f 300 (602)
T PF00012_consen 223 LGGRDFDEALAEYLLEKFKKK--YKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEF 300 (602)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH--HSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred cccceecceeecccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 999999999999999999998 7778888999999999999999999999 6777888888888 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcC
Q 004058 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (776)
Q Consensus 340 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~ 419 (776)
+++++|+++++..+|+++|+.++++..+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999 57888999999999999999999999
Q ss_pred CccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCCCCC
Q 004058 420 GIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATS 495 (776)
Q Consensus 420 ~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~~ 495 (776)
.++. +++.+.|++|++|||++.++.+ .+++|+|+++|+.++..|.+. .+|.+.| |+|+..... .+
T Consensus 380 ~~~~-~~~~~~d~~~~~~~i~~~~~~~-------~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i-~~g~~~~~~--~~ 448 (602)
T PF00012_consen 380 SFRV-KDIKIIDVTPFSIGIEVSNGKF-------SKIIPKNTPIPSKKSKSFKTVTDNQTSISIDI-YEGESSSFE--DN 448 (602)
T ss_dssp SCSS-TSSCESEBESSEEEEEETTTEE-------EEEESTTEBSSEEEEEEEEESSTTCSEEEEEE-EESSSSBGG--GS
T ss_pred cccc-cccccccccccccccccccccc-------ccccccccccccccccccchhcccccccccee-eeccccccc--cc
Confidence 9988 8999999999999999887754 389999999999988877753 3689999 888876554 57
Q ss_pred CceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhhh
Q 004058 496 PVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETA 575 (776)
Q Consensus 496 ~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (776)
..||+|.|.++++.+. | .+ +|+|+|++|.+|+|+|..+++..+..
T Consensus 449 ~~ig~~~i~~i~~~~~-----g--~~-~i~v~f~ld~~Gil~V~~~~~~~~~~--------------------------- 493 (602)
T PF00012_consen 449 KKIGSYTISGIPPAPK-----G--KP-KIKVTFELDENGILSVEAAEVETGKE--------------------------- 493 (602)
T ss_dssp EEEEEEEEES-SSSST-----T--SS-EEEEEEEEETTSEEEEEEEETTTTEE---------------------------
T ss_pred cccccccccccccccc-----c--cc-ceeeEEeeeeeeehhhhhcccccccc---------------------------
Confidence 9999999999987652 3 35 89999999999999888665311000
Q ss_pred hhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHH
Q 004058 576 AQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDA 655 (776)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~ 655 (776)
..+.+.. ...+++++++++
T Consensus 494 --------------------------------------------------------~~~~v~~-----~~~~~~~~~~~~ 512 (602)
T PF00012_consen 494 --------------------------------------------------------EEVTVKK-----KETLSKEEIEEL 512 (602)
T ss_dssp --------------------------------------------------------EEEEEES-----SSSSCHHHHHHH
T ss_pred --------------------------------------------------------ccccccc-----cccccccccccc
Confidence 0123321 223899999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004058 656 EAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERL 735 (776)
Q Consensus 656 ~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~ 735 (776)
.++++++...|+.++++.+++|+||+|+|++|+.++++ ..+++++++ .++++++.+||++++++++.++|++|+
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl 586 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKL 586 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999875 456666666 899999999999999899999999999
Q ss_pred HHHHHhhhHHHHHHHh
Q 004058 736 DVLKAIGDPVFFRFKE 751 (776)
Q Consensus 736 ~~L~~~~~pi~~R~~e 751 (776)
++|+++.+||..|+++
T Consensus 587 ~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 587 EELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999863
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.1e-84 Score=745.14 Aligned_cols=556 Identities=21% Similarity=0.315 Sum_probs=464.1
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCch
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (776)
..+||||||||||+||++ .+| .+++++|..|++++||+|+|.+++++||..| +++++||+||+++.
T Consensus 19 ~~viGIDlGTT~S~va~~--~~~--~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~ 84 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIA--TNR--KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLK 84 (595)
T ss_pred ceEEEEEcCcccEEEEEE--eCC--eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCch
Confidence 359999999999999999 544 6789999999999999999998889999987 79999999999765
Q ss_pred hhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 004058 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (776)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 183 (776)
+.............+....++.+.+.+. +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 85 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 85 EILNTPALFSLVKDYLDVNSSELKLNFA-NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred hhccchhhHhhhhheeecCCCeeEEEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 4211000000001122223444556654 468999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCC
Q 004058 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (776)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l 263 (776)
|++|||++++||+||+|||++|+... ....++||||+||||||+|++++. ++.++|++++|+.++
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~---~~~~~vlV~DlGGGT~DvSi~~~~------------~~~~~V~at~gd~~l 228 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNK---NQKGCYLVYDLGGGTFDVSILNIQ------------EGIFQVIATNGDNML 228 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhccc---CCCCEEEEEECCCCcEEEEEEEEe------------CCeEEEEEEcCCccc
Confidence 99999999999999999999999865 234689999999999999999764 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHH
Q 004058 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELC 343 (776)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~ 343 (776)
||++||.+|++|++.+|... .+.+ .++.||++|+.||.+..... ..++|||++|+++|
T Consensus 229 GG~d~D~~l~~~~~~~~~~~--------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~ 286 (595)
T PRK01433 229 GGNDIDVVITQYLCNKFDLP--------NSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLI 286 (595)
T ss_pred ChHHHHHHHHHHHHHhcCCC--------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHH
Confidence 99999999999999887432 2222 23469999999998765321 16799999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCccc
Q 004058 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIKL 423 (776)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~~~ 423 (776)
+|+++++..+++++|++++ ..+|+.|+||||+||+|+|++.|+++||. ++..++|||+|||+|||++|+.+++.+
T Consensus 287 ~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~-~~~~~~npdeaVA~GAAi~a~~l~~~~-- 361 (595)
T PRK01433 287 LPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKV-DILSDIDPDKAVVWGAALQAENLIAPH-- 361 (595)
T ss_pred HHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCC-CceecCCchHHHHHHHHHHHHHhhCCc--
Confidence 9999999999999999998 56899999999999999999999999986 566789999999999999999998754
Q ss_pred cCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCCCCCCCcee
Q 004058 424 NRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPPGATSPVFA 499 (776)
Q Consensus 424 ~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~~~~~~~i~ 499 (776)
.++.+.|++|++||+++.++.+. +|||+|+++|++++..|++. ..+.+.+ |+|++.++. +|..||
T Consensus 362 -~~~~l~Dv~p~slgi~~~~g~~~-------~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v-~qGe~~~~~--~n~~lg 430 (595)
T PRK01433 362 -TNSLLIDVVPLSLGMELYGGIVE-------KIIMRNTPIPISVVKEFTTYADNQTGIQFHI-LQGEREMAA--DCRSLA 430 (595)
T ss_pred -cceEEEEecccceEEEecCCEEE-------EEEECCCcccceeeEEeEeecCCCeEEEEEE-EeccccccC--CCcEEE
Confidence 56889999999999999877653 89999999999999999764 4588888 999998877 689999
Q ss_pred EEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhhhhhcc
Q 004058 500 KYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQNM 579 (776)
Q Consensus 500 ~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (776)
+|.+.|+++++ +| .+ +|+|+|++|.||+|+|+..+...
T Consensus 431 ~~~l~~i~~~~-----~g--~~-~i~vtf~id~~Gil~V~a~~~~t---------------------------------- 468 (595)
T PRK01433 431 RFELKGLPPMK-----AG--SI-RAEVTFAIDADGILSVSAYEKIS---------------------------------- 468 (595)
T ss_pred EEEEcCCCCCC-----CC--Cc-cEEEEEEECCCCcEEEEEEEcCC----------------------------------
Confidence 99999999875 33 45 89999999999999887554210
Q ss_pred cccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHHHH
Q 004058 580 TVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEAKL 659 (776)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~~~ 659 (776)
+ ++ ..+.+.. ...||+++++++.+++
T Consensus 469 ---~------------------------------------------~~----~~~~i~~-----~~~ls~~ei~~~~~~~ 494 (595)
T PRK01433 469 ---N------------------------------------------TS----HAIEVKP-----NHGIDKTEIDIMLENA 494 (595)
T ss_pred ---C------------------------------------------cE----EEEEecC-----CCCCCHHHHHHHHHHH
Confidence 0 00 0234431 2349999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 004058 660 EELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLK 739 (776)
Q Consensus 660 ~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~ 739 (776)
+++..+|..++++.+++|++|+++|.++..+++ +...+++++|+.+.+.+++.++||..+ +...+.+++++|+
T Consensus 495 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~~~~~ 567 (595)
T PRK01433 495 YKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE---LTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSIKEFK 567 (595)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999964 456679999999999999999999743 5667777777777
Q ss_pred HhhhH-HHHHHH
Q 004058 740 AIGDP-VFFRFK 750 (776)
Q Consensus 740 ~~~~p-i~~R~~ 750 (776)
....+ +..|+.
T Consensus 568 ~~~~~~~~~~~~ 579 (595)
T PRK01433 568 SKIKKSMDTKLN 579 (595)
T ss_pred HHHHHHHHHHhh
Confidence 77777 555544
No 18
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-86 Score=694.10 Aligned_cols=596 Identities=26% Similarity=0.452 Sum_probs=535.0
Q ss_pred CCCCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEE-eCCceEEcHhHHHhHhhCcchHHHHHHHhhC
Q 004058 21 HSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAF-HESTRLLGEEASGIIARYPHRVYSQLRDMIG 99 (776)
Q Consensus 21 ~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~-~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG 99 (776)
.....++|||+||||||+|++ . |+.| .++.|.+|.|.+||+|+| .++++++|..|+.++..||.++|+.-||+||
T Consensus 24 ~~~~~vigidlgttnS~va~m--e-g~~~-kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrlig 99 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVM--E-GKKP-KIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIG 99 (640)
T ss_pred CCCCceeeEeeeccceeEEEE--e-CCCc-eEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhh
Confidence 456679999999999999999 4 4345 589999999999999999 5679999999999999999999999999999
Q ss_pred CCchhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHH
Q 004058 100 KPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKG 179 (776)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~ 179 (776)
|.+.+.+........||+++..+||.++++. .|+.++|.++.+++|.++++.|+.+++.++...|+||||||++.||++
T Consensus 100 Rrf~d~evq~~~k~vpyKiVk~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqa 178 (640)
T KOG0102|consen 100 RRFDDPEVQKDIKQVPYKIVKASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQA 178 (640)
T ss_pred hhccCHHHHHHHHhCCcceEEccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHH
Confidence 9887777777778899999998899999999 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeec
Q 004058 180 LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (776)
Q Consensus 180 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (776)
+++|.++||+++++++|||+|||++|+++.. ....++|||+||||||++++. +.++.+++.++.|
T Consensus 179 Tkdag~iagl~vlrvineptaaalaygld~k---~~g~iaV~dLgggtfdisile------------i~~gvfevksTng 243 (640)
T KOG0102|consen 179 TKDAGQIAGLNVLRVINEPTAAALAYGLDKK---EDGVIAVFDLGGGTFDISILE------------IEDGVFEVKSTNG 243 (640)
T ss_pred hHhhhhhccceeeccCCccchhHHhhccccc---CCCceEEEEcCCceeeeeeeh------------hccceeEEEeccC
Confidence 9999999999999999999999999999873 257899999999999999995 4589999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC----cceEEEee
Q 004058 260 DAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD----IDFRSSIT 335 (776)
Q Consensus 260 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~it 335 (776)
|.++||++||..+++|+..+|+.. .+.|+..+.++++||+.++|++|..||...+..++++.+..+ ..+++++|
T Consensus 244 dtflggedfd~~~~~~~v~~fk~~--~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~t 321 (640)
T KOG0102|consen 244 DTHLGGEDFDNALVRFIVSEFKKE--EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELT 321 (640)
T ss_pred ccccChhHHHHHHHHHHHHhhhcc--cCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeec
Confidence 999999999999999999999988 889999999999999999999999999999999999987766 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHH
Q 004058 336 RQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa 415 (776)
|.+||+++.++++|.+.+++.+|++|++..+||+.|+||||.+|+|.|++.+++.||. .....+||||+||.|||+++.
T Consensus 322 r~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk-~p~~~vnPdeava~GAaiqgg 400 (640)
T KOG0102|consen 322 RGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGK-GPSKGVNPDEAVAGGAAIQGG 400 (640)
T ss_pred HHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCC-CCCCCcCCcchhccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999997 568899999999999999999
Q ss_pred HhcCCccccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeecc----cceEEEEEeecCCCCCC
Q 004058 416 NLSDGIKLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHA----KDFEVSLAYESEDLLPP 491 (776)
Q Consensus 416 ~ls~~~~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~----~~~~i~i~y~~~~~~~~ 491 (776)
.+++.. +++.+.|++|.++|+++.++-+. .|||+++.||++++..|.+. ..+.+.+ |+|++.+..
T Consensus 401 vl~geV---kdvlLLdVtpLsLgietlggvft-------~Li~rnttIptkksqvfstaadgqt~V~ikv-~qgere~~~ 469 (640)
T KOG0102|consen 401 VLSGEV---KDVLLLDVTPLSLGIETLGGVFT-------KLIPRNTTIPTKKSQVFSTAADGQTQVEIKV-FQGEREMVN 469 (640)
T ss_pred hhhccc---cceeeeecchHHHHHHhhhhhhe-------ecccCCcccCchhhhheeecccCCceEEEEe-eechhhhhc
Confidence 998754 78999999999999999998774 89999999999999999875 4588888 999999887
Q ss_pred CCCCCceeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCc
Q 004058 492 GATSPVFAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNIS 571 (776)
Q Consensus 492 ~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (776)
+|..+|+|.+.|||+++ +| .| .|.|+|.+|.||+++|++.+-.
T Consensus 470 --dnk~lG~f~l~gipp~p-----Rg--vp-qieVtfDIdanGI~~vsA~dk~--------------------------- 512 (640)
T KOG0102|consen 470 --DNKLLGSFILQGIPPAP-----RG--VP-QIEVTFDIDANGIGTVSAKDKG--------------------------- 512 (640)
T ss_pred --cCcccceeeecccCCCC-----CC--CC-ceeEEEeecCCceeeeehhhcc---------------------------
Confidence 69999999999999997 55 57 8999999999999976543210
Q ss_pred hhhhhhcccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHH
Q 004058 572 AETAAQNMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEA 651 (776)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~ 651 (776)
++++ + .|++.. ...||+++
T Consensus 513 ----------t~K~--------------------------------------------q--si~i~~-----sggLs~~e 531 (640)
T KOG0102|consen 513 ----------TGKS--------------------------------------------Q--SITIAS-----SGGLSKDE 531 (640)
T ss_pred ----------cCCc--------------------------------------------c--ceEEee-----cCCCCHHH
Confidence 0000 0 355541 23499999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 004058 652 LVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEF 731 (776)
Q Consensus 652 ~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~ 731 (776)
++.|++..+.+...|+.++++.+.+|..|+++|.....+.. |.+..+.++..+|+..+....+.+-.- ..-+.++.
T Consensus 532 i~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~---~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~ 607 (640)
T KOG0102|consen 532 IELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE---FEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEI 607 (640)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh---hhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhH
Confidence 99999999999999999999999999999999999999875 778888888889999998888877642 22334888
Q ss_pred HHHHHHHHHhhhHHHHHHHhh
Q 004058 732 QERLDVLKAIGDPVFFRFKEL 752 (776)
Q Consensus 732 ~~k~~~L~~~~~pi~~R~~e~ 752 (776)
..+...|++-..|++.-++..
T Consensus 608 k~~~~~l~q~~lkl~es~~k~ 628 (640)
T KOG0102|consen 608 KKAMSALQQASLKLFESAYKN 628 (640)
T ss_pred HHHHHHHHHhhhHHHHHHHhh
Confidence 889999998888888766543
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-82 Score=721.22 Aligned_cols=570 Identities=27% Similarity=0.448 Sum_probs=509.2
Q ss_pred CCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCC-ceEEcHhHHHhHhhCcchHHHHHHHhhCCC
Q 004058 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-TRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (776)
.+.+||||||||||+||++ .+++ .+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.++++.+||++|+.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~--~~~~-~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~ 80 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVM--RGGG-LPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG 80 (579)
T ss_pred CceEEEEEcCCCcEEEEEE--eCCC-CceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC
Confidence 4579999999999999999 5552 56899999999999999999755 699999999999999999999999999986
Q ss_pred chhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHH
Q 004058 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (776)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~ 181 (776)
.. .....+.+. |+.++|+++++++|+++++.++.+++..+.++|||||+||++.||++++
T Consensus 81 ~~-------------------~~~~~~~~~-~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 81 SN-------------------GLKISVEVD-GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred CC-------------------CCcceeeeC-CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 11 001233343 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCC
Q 004058 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (776)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (776)
+|+++|||+++++++||+|||++|+.... .+.+|||||+||||||+|++++. .+.++|++++|+.
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~---~~~~vlV~DlGGGTfDvSll~~~------------~g~~ev~at~gd~ 205 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG---KEKTVLVYDLGGGTFDVSLLEIG------------DGVFEVLATGGDN 205 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC---CCcEEEEEEcCCCCEEEEEEEEc------------CCEEEEeecCCCc
Confidence 99999999999999999999999999874 56899999999999999999774 6699999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHH
Q 004058 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEE 341 (776)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~ 341 (776)
++||++||.+|.+|+..+|+.+ ++.++..++.+++||+.+||++|+.||...++.++++.+..+.++..+|||++||.
T Consensus 206 ~LGGddfD~~l~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~ 283 (579)
T COG0443 206 HLGGDDFDNALIDYLVMEFKGK--GGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEE 283 (579)
T ss_pred ccCchhHHHHHHHHHHHHhhcc--CCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHH
Confidence 9999999999999999999998 77899999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
++.+++.++..+++++|.+++++..+|+.|+||||++|||.|++.++++|+ +.+...+||||+||.|||++|+.+++..
T Consensus 284 l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~ 362 (579)
T COG0443 284 LILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEV 362 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999999 5778999999999999999999999865
Q ss_pred cccCcceEEeccceeeeeeecCCccccCCCcceeeeeCCCCCCcceEEeeeccc----ceEEEEEeecCCCCCCCCCCCc
Q 004058 422 KLNRKLGMVDGSSYGFVVELDGPELQKDESTRQLLAPRMKKLPSKMFRSIIHAK----DFEVSLAYESEDLLPPGATSPV 497 (776)
Q Consensus 422 ~~~~~~~~~d~~~~~igi~~~~~~~~~~~~~~~~l~~~~~~~P~~~~~~f~~~~----~~~i~i~y~~~~~~~~~~~~~~ 497 (776)
. ++.+.|++|+++|+++.++.+. +++++++.+|.++...|.+.. .+.+++ |+|++.+.. +|..
T Consensus 363 ~---d~ll~Dv~plslgie~~~~~~~-------~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v-~qge~~~~~--~~~~ 429 (579)
T COG0443 363 P---DVLLLDVIPLSLGIETLGGVRT-------PIIERNTTIPVKKSQEFSTAADGQTAVAIHV-FQGEREMAA--DNKS 429 (579)
T ss_pred c---CceEEeeeeeccccccCcchhh-------hHHhcCCCCCcccceEEEeecCCCceeEEEE-Eecchhhcc--cCce
Confidence 3 7889999999999999887653 899999999999999997753 477888 999988776 5899
Q ss_pred eeEEEEcCCccchhhhccCCCCCCceEEEEEEEccCCceeeeeeeEEEEEEEEeeccccccccccccCCCCCCchhhhhh
Q 004058 498 FAKYAVSGLAEASEKYSSRNLSSPIKANLHFSLSRSGVLSLDRADAVIEITEWVEVPKKNLIVENVASSSPNISAETAAQ 577 (776)
Q Consensus 498 i~~~~i~~i~~~~~~~~~~~~~~~~~i~v~f~ld~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (776)
+|.|.+.++++++ +| .| .|.++|.+|.||++.|+..+...
T Consensus 430 lg~f~l~~i~~~~-----~g--~~-~i~v~f~iD~~gi~~v~a~~~~~-------------------------------- 469 (579)
T COG0443 430 LGRFELDGIPPAP-----RG--VP-QIEVTFDIDANGILNVTAKDLGT-------------------------------- 469 (579)
T ss_pred eEEEECCCCCCCC-----CC--CC-ceEEEeccCCCcceEeeeecccC--------------------------------
Confidence 9999999999987 34 56 79999999999999876532100
Q ss_pred cccccccccccccCCCCCCCCchhhhhhcCCCCCCCCCccchhhhcccccceeeeeeEEEeeccCCCCCCCHHHHHHHHH
Q 004058 578 NMTVEANENLQSESGTSSASNSTAEELSASNSSAEEPSKTELLTEKRLKKRTFRVPLKIVEKTVGPGASLSKEALVDAEA 657 (776)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~i~~~~~~~~~~~~ls~~~~~~~~~ 657 (776)
+++ -.+++.. ... |++++++.|.+
T Consensus 470 -----~k~----------------------------------------------~~i~i~~----~~~-ls~~~i~~~~~ 493 (579)
T COG0443 470 -----GKE----------------------------------------------QSITIKA----SSG-LSDEEIERMVE 493 (579)
T ss_pred -----Cce----------------------------------------------EEEEEec----CCC-CCHHHHHHHHH
Confidence 000 0345542 234 99999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004058 658 KLEELDKKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDV 737 (776)
Q Consensus 658 ~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~ 737 (776)
.++.+.+.|+..++..+.+|..|+++|.++..|.+. . .+++++++++.+.+.+.++||+.+ .++++.+.++
T Consensus 494 ~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~ 564 (579)
T COG0443 494 DAEANAALDKKFRELVEARNEAESLIYSLEKALKEI---V-KVSEEEKEKIEEAITDLEEALEGE-----KEEIKAKIEE 564 (579)
T ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhh---c-cCCHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHH
Confidence 999999999999999999999999999999999864 2 889999999999999999999972 8999999999
Q ss_pred HHHhhhHHHHHHHh
Q 004058 738 LKAIGDPVFFRFKE 751 (776)
Q Consensus 738 L~~~~~pi~~R~~e 751 (776)
|+....++..++.+
T Consensus 565 l~~~~~~~~~~~~~ 578 (579)
T COG0443 565 LQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=3.6e-54 Score=477.01 Aligned_cols=346 Identities=19% Similarity=0.245 Sum_probs=287.5
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEe------------------------------------
Q 004058 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFH------------------------------------ 69 (776)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~------------------------------------ 69 (776)
++|||||||||+||++ .+| .++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~--~~~--~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T PRK11678 2 FIGFDYGTANCSVAVM--RDG--KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREE 77 (450)
T ss_pred eEEEecCccceeeEEe--eCC--ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccc
Confidence 6899999999999999 555 457889999999999999993
Q ss_pred -----CCceEEcHhHHHhHhhCcchH--HHHHHHhhCCCchhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHH
Q 004058 70 -----ESTRLLGEEASGIIARYPHRV--YSQLRDMIGKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELL 142 (776)
Q Consensus 70 -----~~~~~~G~~A~~~~~~~p~~~--~~~~K~llG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~ 142 (776)
+++.++|..|+.....+|.++ +..+|++||...- . .+....+++++
T Consensus 78 ~~~~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~-------------~--------------~~~~~~~e~l~ 130 (450)
T PRK11678 78 DIDVTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGL-------------K--------------PQQVALFEDLV 130 (450)
T ss_pred cccccccccchhHHHHHhhccCCCCceEEecchhhhccCCC-------------C--------------ccceeCHHHHH
Confidence 456789999999999999988 7799999997420 0 01224489999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEcCCCCC-----HHHHHH---HHHHHHHhCCceeeecchhHHHHHHhccccCCCCC
Q 004058 143 AMVLSYAVNLVDTHAKLAVKDFVISVPPYFG-----QAERKG---LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNE 214 (776)
Q Consensus 143 a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~-----~~qR~~---l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~ 214 (776)
+++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+... ..
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~---~~ 207 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL---TE 207 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc---CC
Confidence 9999999999999999999999999999998 778766 799999999999999999999999998654 34
Q ss_pred CcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHH-HHHHHHHhhh--cCCCCCC-
Q 004058 215 SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLV-EYFADEFNKQ--VGNGVDV- 290 (776)
Q Consensus 215 ~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~-~~l~~~~~~~--~~~~~d~- 290 (776)
+..+||||+||||+|+|++++..... .......+++++.|. .+||+|||.+|+ +++...|... ..++.++
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~-----~~~~r~~~vla~~G~-~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p 281 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWR-----GRADRSASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIALP 281 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCccc-----ccCCcceeEEecCCC-CCChHHHHHHHHHHHHHHHhhhchhhccCCcCc
Confidence 68899999999999999999853110 112345689999985 799999999998 6788877521 0011110
Q ss_pred ----------------------------------CCCHHHH------------HHHHHHHHHHhhhccCCCceeEEEeec
Q 004058 291 ----------------------------------RKSPKAM------------AKLKKQVKRTKEILSANTMAPISVESL 324 (776)
Q Consensus 291 ----------------------------------~~~~~~~------------~kL~~~~e~~K~~Ls~~~~~~i~i~~l 324 (776)
..+++.+ .+|+.+||++|+.||.+.++.+.++.+
T Consensus 282 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~ 361 (450)
T PRK11678 282 SLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFI 361 (450)
T ss_pred chhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEeccc
Confidence 0123333 378899999999999999999999865
Q ss_pred ccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcch
Q 004058 325 YVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADE 404 (776)
Q Consensus 325 ~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~de 404 (776)
. .++...|||++|+++++++++++..+|+++|+.+++. ++.|+||||+|++|.|++.|++.||..++ ...+|.+
T Consensus 362 ~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~ 435 (450)
T PRK11678 362 S--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFG 435 (450)
T ss_pred C--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcc
Confidence 4 3567899999999999999999999999999999876 47899999999999999999999987655 4669999
Q ss_pred hHHhHHHHHHHHh
Q 004058 405 AIVLGASLLAANL 417 (776)
Q Consensus 405 ava~GAa~~aa~l 417 (776)
+||.|+|++|..+
T Consensus 436 sVa~Gla~~a~~~ 448 (450)
T PRK11678 436 SVTAGLARWAQVV 448 (450)
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999763
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=2.3e-37 Score=335.60 Aligned_cols=307 Identities=19% Similarity=0.299 Sum_probs=234.3
Q ss_pred EEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCC--c-eEEcHhHHHhHhhCcchHHHHHHHhhCCCch
Q 004058 27 SSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES--T-RLLGEEASGIIARYPHRVYSQLRDMIGKPFK 103 (776)
Q Consensus 27 vGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~--~-~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~ 103 (776)
+||||||+|++++.. + .+ .++. .||+|+|... . ..+|.+|..+..+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~----~-~~-~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~----------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK----G-KG-IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA----------- 61 (336)
T ss_pred eEEEcccccEEEEEC----C-CC-EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE-----------
Confidence 899999999999876 3 22 2332 5999999843 3 36999998766555544321
Q ss_pred hhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 004058 104 QVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (776)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 183 (776)
..| +.+| .+...+++..+|+++.+.+..........+|||||++|+..||+++.+|
T Consensus 62 ---------~~p--------------i~~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 62 ---------IRP--------------LRDG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred ---------Ecc--------------CCCC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 001 1112 2333356677777777654432222233699999999999999999999
Q ss_pred HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCC
Q 004058 184 AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAEL 263 (776)
Q Consensus 184 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l 263 (776)
++.||++++.+++||+|||++|+... ..+..++|||+||||||++++++. +. . ..++..+
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lVvDiGggttdvsvv~~g-------------~~---~-~~~~~~l 177 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDI---SQPSGNMVVDIGGGTTDIAVLSLG-------------GI---V-TSSSIKV 177 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEEEeC-------------CE---E-EeCCcCC
Confidence 99999999999999999999998854 235679999999999999999642 11 1 2356799
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCC----ceeEEEe--ecccCcceEEEeeHH
Q 004058 264 GGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSSITRQ 337 (776)
Q Consensus 264 GG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~ 337 (776)
||++||+.|++++..+|... .. ...||++|+.++... ...+.+. .+..+.+..+.|+|+
T Consensus 178 GG~did~~i~~~l~~~~~~~------~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~ 242 (336)
T PRK13928 178 AGDKFDEAIIRYIRKKYKLL------IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSE 242 (336)
T ss_pred HHHHHHHHHHHHHHHHhchh------cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHH
Confidence 99999999999999776322 11 357999999886431 2333332 234566778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCcc-EEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHH
Q 004058 338 KFEELCEDLWERSLVPLREVLNYSG--LKMDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 338 efe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~a 414 (776)
+|++++.++++++...|++.|+.++ +..+.++ .|+|+||+|++|.|++.|++.|+. ++....||++|||+|||+++
T Consensus 243 ~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~-~v~~~~~P~~ava~Gaa~~~ 321 (336)
T PRK13928 243 EIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV-PVYIAEDPISCVALGTGKML 321 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC-CceecCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986 4456777 799999999999999999999986 66677899999999999998
Q ss_pred HHh
Q 004058 415 ANL 417 (776)
Q Consensus 415 a~l 417 (776)
..+
T Consensus 322 ~~~ 324 (336)
T PRK13928 322 ENI 324 (336)
T ss_pred hch
Confidence 764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.6e-36 Score=327.86 Aligned_cols=306 Identities=18% Similarity=0.284 Sum_probs=239.7
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCC-c--eEEcHhHHHhHhhCcchHHHHHHHhhCCC
Q 004058 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-T--RLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (776)
..+||||||+|+++ + .++ .++ +.| .||+|+|++. . ..+|.+|+.+..++|.++... +
T Consensus 5 ~~~giDlGt~~~~i--~--~~~-~~~--~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----- 64 (335)
T PRK13929 5 TEIGIDLGTANILV--Y--SKN-KGI--ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----- 64 (335)
T ss_pred CeEEEEcccccEEE--E--ECC-CcE--Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e-----
Confidence 46999999999975 3 344 343 445 4999999743 2 479999999888877764321 0
Q ss_pred chhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCC--cEEEEcCCCCCHHHHHH
Q 004058 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVK--DFVISVPPYFGQAERKG 179 (776)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~--~~VitVPa~f~~~qR~~ 179 (776)
| +.+|. +.--++++.+|++++..++..++..+. .+|||||++|+..||++
T Consensus 65 -------------p--------------i~~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~ 116 (335)
T PRK13929 65 -------------P--------------MKDGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRA 116 (335)
T ss_pred -------------c--------------CCCCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHH
Confidence 1 11122 222278899999999988877776553 79999999999999999
Q ss_pred HHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeec
Q 004058 180 LMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (776)
Q Consensus 180 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (776)
+.+|++.||++++.+++||+|||++|+... .++..++|||+||||||++++++. +. + ..+
T Consensus 117 l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~---~~~~~~lvvDiG~gtt~v~vi~~~-------------~~---~-~~~ 176 (335)
T PRK13929 117 ISDAVKNCGAKNVHLIEEPVAAAIGADLPV---DEPVANVVVDIGGGTTEVAIISFG-------------GV---V-SCH 176 (335)
T ss_pred HHHHHHHcCCCeeEeecCHHHHHHhcCCCc---CCCceEEEEEeCCCeEEEEEEEeC-------------CE---E-Eec
Confidence 999999999999999999999999998754 335789999999999999999652 21 1 234
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCC----ceeEEEe--ecccCcceEEE
Q 004058 260 DAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSS 333 (776)
Q Consensus 260 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~ 333 (776)
+..+||++||+.|.+++.+.+. .... ...||++|+.++... ...+.+. ++..+.+..+.
T Consensus 177 ~~~~GG~~id~~l~~~l~~~~~------~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~ 241 (335)
T PRK13929 177 SIRIGGDQLDEDIVSFVRKKYN------LLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTIT 241 (335)
T ss_pred CcCCHHHHHHHHHHHHHHHHhC------cCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEE
Confidence 5689999999999999987642 2221 267999999998631 2233333 23445667889
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCcc-EEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHH
Q 004058 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLK--MDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGA 410 (776)
Q Consensus 334 itr~efe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GA 410 (776)
|+|++|++++.+++.++...|.+.|+.+... .+.++ .|+|+||+|++|.+++.|++.|+. ++....||+++|++||
T Consensus 242 i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~-~v~~~~~P~~~Va~Ga 320 (335)
T PRK13929 242 LESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV-PVHVAANPLESVAIGT 320 (335)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC-CceeCCCHHHHHHHHH
Confidence 9999999999999999999999999998643 45677 699999999999999999999986 6667789999999999
Q ss_pred HHHH
Q 004058 411 SLLA 414 (776)
Q Consensus 411 a~~a 414 (776)
+..-
T Consensus 321 ~~~~ 324 (335)
T PRK13929 321 GRSL 324 (335)
T ss_pred HHHH
Confidence 9773
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.2e-34 Score=309.78 Aligned_cols=308 Identities=20% Similarity=0.303 Sum_probs=225.6
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCC-c--eEEcHhHHHhHhhCcchHHHHHHHhhCCC
Q 004058 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-T--RLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (776)
..|||||||++++++.. | .+. ++ .+||+|+|... + .++|.+|..+..+.|.++..
T Consensus 6 ~~igIDlGt~~~~i~~~----~-~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~--------- 63 (334)
T PRK13927 6 NDLGIDLGTANTLVYVK----G-KGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA--------- 63 (334)
T ss_pred ceeEEEcCcceEEEEEC----C-CcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE---------
Confidence 46999999999998543 4 233 32 27999999643 2 48999998776655543211
Q ss_pred chhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHH
Q 004058 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (776)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~ 181 (776)
..| +.+|..... +.+..+|+++........... ..+|+|||++|+..||++++
T Consensus 64 -----------~~p--------------i~~G~i~d~-~~~~~ll~~~~~~~~~~~~~~-~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 64 -----------IRP--------------MKDGVIADF-DVTEKMLKYFIKKVHKNFRPS-PRVVICVPSGITEVERRAVR 116 (334)
T ss_pred -----------Eec--------------CCCCeecCH-HHHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCCHHHHHHHH
Confidence 011 112211111 223444444443332222211 37999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCC
Q 004058 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (776)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (776)
+|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++. +. ...+..
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lvvDiGggttdvs~v~~~-------------~~----~~~~~~ 176 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPV---TEPTGSMVVDIGGGTTEVAVISLG-------------GI----VYSKSV 176 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCcc---cCCCeEEEEEeCCCeEEEEEEecC-------------Ce----EeeCCc
Confidence 9999999999999999999999998754 234678999999999999999652 11 123445
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc----eeEEE--eecccCcceEEEee
Q 004058 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM----APISV--ESLYVDIDFRSSIT 335 (776)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~----~~i~i--~~l~~~~d~~~~it 335 (776)
.+||++||+.|.+++.+++. .... ...||++|+.++.... ..+.+ +.+..+.+..+.|+
T Consensus 177 ~lGG~~id~~l~~~l~~~~~------~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (334)
T PRK13927 177 RVGGDKFDEAIINYVRRNYN------LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITIS 241 (334)
T ss_pred CChHHHHHHHHHHHHHHHhC------cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEEC
Confidence 79999999999999987653 2111 2568999999875422 22333 23445666788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCcc-EEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 336 RQKFEELCEDLWERSLVPLREVLNYSGLK--MDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
|++|++++.+.++++...|.++|++++.. .+.++ .|+|+||+|++|.+++.|++.|+. ++....||+++||+||++
T Consensus 242 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~-~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 242 SNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGL-PVHVAEDPLTCVARGTGK 320 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC-CcEecCCHHHHHHHHHHH
Confidence 99999999999999999999999988643 22334 599999999999999999999985 677788999999999999
Q ss_pred HHHHh
Q 004058 413 LAANL 417 (776)
Q Consensus 413 ~aa~l 417 (776)
++..+
T Consensus 321 ~~~~~ 325 (334)
T PRK13927 321 ALENI 325 (334)
T ss_pred HHhhH
Confidence 98653
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=7.8e-34 Score=307.80 Aligned_cols=307 Identities=20% Similarity=0.282 Sum_probs=221.8
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCC-----c--eEEcHhHHHhHhhCcchHHHHHHHhh
Q 004058 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-----T--RLLGEEASGIIARYPHRVYSQLRDMI 98 (776)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (776)
-+||||||+||++++. . .++ ++ ..||+|+|.++ . .++|.+|...+.+.|.++-. +
T Consensus 4 ~~giDlGt~~s~i~~~--~---~~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~--- 65 (333)
T TIGR00904 4 DIGIDLGTANTLVYVK--G---RGI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--I--- 65 (333)
T ss_pred eeEEecCcceEEEEEC--C---CCE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--E---
Confidence 3999999999998875 2 233 33 27999999733 3 67999998765554543210 1
Q ss_pred CCCchhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHH
Q 004058 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (776)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~ 178 (776)
.| +.+|..... +.+..+++|+........+..-..+|+|||++|+..||+
T Consensus 66 ---------------~p--------------i~~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~ 115 (333)
T TIGR00904 66 ---------------RP--------------MKDGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERR 115 (333)
T ss_pred ---------------ec--------------CCCCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHH
Confidence 01 111211111 233344444443332211111127999999999999999
Q ss_pred HHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEee
Q 004058 179 GLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVR 258 (776)
Q Consensus 179 ~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (776)
++++|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++. +. ...
T Consensus 116 ~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~---~~~~~~lVvDiG~gttdvs~v~~~-------------~~----~~~ 175 (333)
T TIGR00904 116 AVKESALSAGAREVYLIEEPMAAAIGAGLPV---EEPTGSMVVDIGGGTTEVAVISLG-------------GI----VVS 175 (333)
T ss_pred HHHHHHHHcCCCeEEEecCHHHHHHhcCCcc---cCCceEEEEEcCCCeEEEEEEEeC-------------CE----Eec
Confidence 9999999999999999999999999998754 235679999999999999999653 11 123
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc-----eeEEEee--cccCcceE
Q 004058 259 WDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM-----APISVES--LYVDIDFR 331 (776)
Q Consensus 259 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~-----~~i~i~~--l~~~~d~~ 331 (776)
++..+||++||+.|++++.+++.. ... +..||++|+.++.... ..+.+.+ ...+.+..
T Consensus 176 ~~~~lGG~did~~l~~~l~~~~~~------~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (333)
T TIGR00904 176 RSIRVGGDEFDEAIINYIRRTYNL------LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRT 240 (333)
T ss_pred CCccchHHHHHHHHHHHHHHHhcc------cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeE
Confidence 455899999999999999876521 111 3679999999875321 2222221 12234456
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCc-c-EEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHh
Q 004058 332 SSITRQKFEELCEDLWERSLVPLREVLNYSGLKM-DEI-Y-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVL 408 (776)
Q Consensus 332 ~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~-~~i-~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~ 408 (776)
..|++++|.+++.+.++++...+.+.|+.++... .++ + .|+|+||+|++|.+++.|++.|+. ++....||+++||.
T Consensus 241 ~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~-~v~~~~~P~~~va~ 319 (333)
T TIGR00904 241 IEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGL-PVIVADDPLLCVAK 319 (333)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCC-CceecCChHHHHHH
Confidence 7899999999999999999999999999876432 244 3 699999999999999999999986 67778899999999
Q ss_pred HHHHHHHH
Q 004058 409 GASLLAAN 416 (776)
Q Consensus 409 GAa~~aa~ 416 (776)
||++++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99999654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=8.1e-33 Score=300.85 Aligned_cols=308 Identities=22% Similarity=0.298 Sum_probs=228.4
Q ss_pred EEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeC---CceEEcHhHHHhHhhCcchHHHHHHHhhCCCc
Q 004058 26 VSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE---STRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (776)
Q Consensus 26 vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~---~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (776)
.+||||||+++++++. + .++ ++ .+||+|+|.+ ...++|.+|.....+.|.+...
T Consensus 10 ~vgiDlGt~~t~i~~~----~-~~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~---------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVK----G-KGI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA---------- 66 (335)
T ss_pred ceEEEcCCCcEEEEEC----C-CCE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE----------
Confidence 4999999999999886 3 222 22 2599999974 2358999998765544433100
Q ss_pred hhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHH
Q 004058 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (776)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 182 (776)
..| +.+|.... -+.+..+|+++.+.+..........+|+|+|++|+..+|+++.+
T Consensus 67 ----------~~p--------------i~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 67 ----------IRP--------------LKDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred ----------eec--------------CCCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 011 11221111 23466677777655544333335689999999999999999999
Q ss_pred HHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCC
Q 004058 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (776)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (776)
|++.+|++.+.+++||+|||++|+... ..+..++|||+||||||++++... .+ + ..+...
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~---~~~~~~lVvDiG~gttdvs~v~~g--------------~~--~-~~~~~~ 181 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPV---TEPVGNMVVDIGGGTTEVAVISLG--------------GI--V-YSESIR 181 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCc---CCCCceEEEEeCCCeEEEEEEEeC--------------CE--E-eecCcC
Confidence 999999999999999999999997754 223567999999999999999532 11 1 245568
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCc----eeEEEe--ecccCcceEEEeeH
Q 004058 263 LGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTM----APISVE--SLYVDIDFRSSITR 336 (776)
Q Consensus 263 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~----~~i~i~--~l~~~~d~~~~itr 336 (776)
+||.+||+.|.+++.+++. .+.. ...||++|+.++.... ..+.+. .+..+.+..+.|+|
T Consensus 182 lGG~~id~~l~~~l~~~~~------~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 246 (335)
T PRK13930 182 VAGDEMDEAIVQYVRRKYN------LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISS 246 (335)
T ss_pred chhHHHHHHHHHHHHHHhC------CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECH
Confidence 9999999999999987642 2211 2578999999975432 223333 23344556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCccE-EEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHH
Q 004058 337 QKFEELCEDLWERSLVPLREVLNYSGLK--MDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (776)
Q Consensus 337 ~efe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~ 413 (776)
++|++++.+.++++.+.+.++|+.+... .+.++. |+|+||+|++|.++++|++.|+. ++....+|+++||+||++.
T Consensus 247 ~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~-~v~~~~~p~~ava~Ga~~~ 325 (335)
T PRK13930 247 EEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL-PVHIAEDPLTCVARGTGKA 325 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC-CceecCCHHHHHHHHHHHH
Confidence 9999999999999999999999987532 233454 99999999999999999999986 5667779999999999999
Q ss_pred HHHh
Q 004058 414 AANL 417 (776)
Q Consensus 414 aa~l 417 (776)
+...
T Consensus 326 ~~~~ 329 (335)
T PRK13930 326 LENL 329 (335)
T ss_pred HhCh
Confidence 8653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=3.5e-29 Score=264.13 Aligned_cols=307 Identities=23% Similarity=0.355 Sum_probs=215.7
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCC---ceEEcHhHHHhHhhCcchHHHHHHHhhCCC
Q 004058 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES---TRLLGEEASGIIARYPHRVYSQLRDMIGKP 101 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~---~~~~G~~A~~~~~~~p~~~~~~~K~llG~~ 101 (776)
.-+||||||+|+.++.- + .+ ++.++ ||+|+++.. -..+|.+|..+..+.|.+.
T Consensus 2 ~~igIDLGT~~t~i~~~----~-~G--iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i----------- 57 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK----G-KG--IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI----------- 57 (326)
T ss_dssp SEEEEEE-SSEEEEEET----T-TE--EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE-----------
T ss_pred CceEEecCcccEEEEEC----C-CC--EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc-----------
Confidence 46999999999988553 3 22 44443 999999753 3459999976555444431
Q ss_pred chhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHH
Q 004058 102 FKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLM 181 (776)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~ 181 (776)
.. ..| +.+|. +.=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.
T Consensus 58 ----~~-----~~P--------------l~~Gv-I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~ 113 (326)
T PF06723_consen 58 ----EV-----VRP--------------LKDGV-IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALI 113 (326)
T ss_dssp ----EE-----E-S--------------EETTE-ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHH
T ss_pred ----EE-----Ecc--------------ccCCc-ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 10 111 12332 2223567777888777666532222346999999999999999999
Q ss_pred HHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCC
Q 004058 182 QAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (776)
Q Consensus 182 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (776)
+|+..||.+-+.|+.||.|||+..++.- .++...||+|+||||||++++.+ .+.+.-.. .
T Consensus 114 ~a~~~aGa~~V~li~ep~AaAiGaGl~i---~~~~g~miVDIG~GtTdiavisl-------------ggiv~s~s----i 173 (326)
T PF06723_consen 114 DAARQAGARKVYLIEEPIAAAIGAGLDI---FEPRGSMIVDIGGGTTDIAVISL-------------GGIVASRS----I 173 (326)
T ss_dssp HHHHHTT-SEEEEEEHHHHHHHHTT--T---TSSS-EEEEEE-SS-EEEEEEET-------------TEEEEEEE----E
T ss_pred HHHHHcCCCEEEEecchHHHHhcCCCCC---CCCCceEEEEECCCeEEEEEEEC-------------CCEEEEEE----E
Confidence 9999999999999999999999988764 34678999999999999999953 22222222 2
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCC----ceeEEEe--ecccCcceEEEee
Q 004058 262 ELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANT----MAPISVE--SLYVDIDFRSSIT 335 (776)
Q Consensus 262 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~it 335 (776)
..||++||++|.+|+.+++.-. +. ...||++|+.++.-. ...+.+. ++..+.+..+.|+
T Consensus 174 ~~gG~~~DeaI~~~ir~~y~l~------Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~ 238 (326)
T PF06723_consen 174 RIGGDDIDEAIIRYIREKYNLL------IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEIT 238 (326)
T ss_dssp S-SHHHHHHHHHHHHHHHHSEE-----------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEE
T ss_pred EecCcchhHHHHHHHHHhhCcc------cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEc
Confidence 7899999999999999997422 21 467999999987542 2234443 5677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCc--cEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 336 RQKFEELCEDLWERSLVPLREVLNYSGLK-MDEI--YAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~a~~~-~~~i--~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
-+++.+.+.+.+.+|...|+++|+...-. ..|| +.|+|+||+++++.+.+.|++.++- ++...-||..||+.||..
T Consensus 239 ~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~-pV~va~~P~~~va~G~~~ 317 (326)
T PF06723_consen 239 SSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGV-PVRVADDPLTAVARGAGK 317 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS--EEE-SSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCC-CEEEcCCHHHHHHHHHHH
Confidence 99999999999999999999999976322 1233 5799999999999999999999986 788889999999999986
Q ss_pred HHH
Q 004058 413 LAA 415 (776)
Q Consensus 413 ~aa 415 (776)
...
T Consensus 318 ~l~ 320 (326)
T PF06723_consen 318 LLE 320 (326)
T ss_dssp TTC
T ss_pred HHh
Confidence 643
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=2.1e-28 Score=250.84 Aligned_cols=200 Identities=16% Similarity=0.220 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEE
Q 004058 139 EELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (776)
Q Consensus 139 eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (776)
-+.++++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+.. ..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~--------~~ 110 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK--------NG 110 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC--------Cc
Confidence 3678999999999999888888999999999999999999999999999999999999999999998643 25
Q ss_pred EEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 004058 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (776)
Q Consensus 219 lV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 298 (776)
+|+|+||||||+++++ .+.+ +. ..+..+||++||+.|.+++ +.+
T Consensus 111 ~vvDiGggtt~i~i~~--------------~G~i--~~-~~~~~~GG~~it~~Ia~~~----------~i~--------- 154 (239)
T TIGR02529 111 AVVDVGGGTTGISILK--------------KGKV--IY-SADEPTGGTHMSLVLAGAY----------GIS--------- 154 (239)
T ss_pred EEEEeCCCcEEEEEEE--------------CCeE--EE-EEeeecchHHHHHHHHHHh----------CCC---------
Confidence 9999999999999984 2322 22 3355799999999876543 122
Q ss_pred HHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc
Q 004058 299 KLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT 378 (776)
Q Consensus 299 kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s 378 (776)
+.+||++|+.++ +.+++.+++.++++++...+++.|+.. .++.|+|+||+|
T Consensus 155 --~~~AE~~K~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a 205 (239)
T TIGR02529 155 --FEEAEEYKRGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGAC 205 (239)
T ss_pred --HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchh
Confidence 378999998754 145677899999999999999999864 456899999999
Q ss_pred CcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 379 RVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 379 riP~v~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
++|.+++.+++.|+. ++..+.||++++|.|||+
T Consensus 206 ~ipgl~e~l~~~lg~-~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 206 SFSGFADVFEKQLGL-NVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred cchhHHHHHHHHhCC-CcccCCCCCeehhheeec
Confidence 999999999999986 677789999999999985
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=2.4e-26 Score=232.19 Aligned_cols=311 Identities=23% Similarity=0.327 Sum_probs=233.9
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeC--C---ceEEcHhHHHhHhhCcchHHHHHHHhh
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHE--S---TRLLGEEASGIIARYPHRVYSQLRDMI 98 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~--~---~~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (776)
+..+|||+||.|+.|..- ++ -|++|+ ||+|++.. + -..+|.+|+.+.-+.|.+.
T Consensus 6 s~diGIDLGTanTlV~~k----~k---gIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni-------- 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK----GK---GIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI-------- 64 (342)
T ss_pred cccceeeecccceEEEEc----Cc---eEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc--------
Confidence 458999999999998775 31 266775 99999965 2 2359999866554444432
Q ss_pred CCCchhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcC-CCCCcEEEEcCCCCCHHHH
Q 004058 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAK-LAVKDFVISVPPYFGQAER 177 (776)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~-~~~~~~VitVPa~f~~~qR 177 (776)
..++...+..+.--+++..+|+|+.+.+..... .....++++||..-++.+|
T Consensus 65 ---------------------------~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VEr 117 (342)
T COG1077 65 ---------------------------VAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVER 117 (342)
T ss_pred ---------------------------eEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHH
Confidence 112211112244446777788888887764333 2334699999999999999
Q ss_pred HHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEe
Q 004058 178 KGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDV 257 (776)
Q Consensus 178 ~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (776)
+|+++|++.||.+.+.++.||.|||+.-++.- .++..-+|||+||||||++++.+. +.+.
T Consensus 118 rAi~ea~~~aGa~~V~lieEp~aAAIGaglpi---~ep~G~mvvDIGgGTTevaVISlg-------------giv~---- 177 (342)
T COG1077 118 RAIKEAAESAGAREVYLIEEPMAAAIGAGLPI---MEPTGSMVVDIGGGTTEVAVISLG-------------GIVS---- 177 (342)
T ss_pred HHHHHHHHhccCceEEEeccHHHHHhcCCCcc---cCCCCCEEEEeCCCceeEEEEEec-------------CEEE----
Confidence 99999999999999999999999999876643 234567999999999999999652 3222
Q ss_pred ecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC--------CceeEEEeecccCcc
Q 004058 258 RWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN--------TMAPISVESLYVDID 329 (776)
Q Consensus 258 ~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~--------~~~~i~i~~l~~~~d 329 (776)
...-.+||+.||+.|.+|+.++|+ .-+-. ..+|++|...... .+..+.-.++..+.+
T Consensus 178 ~~Sirv~GD~~De~Ii~yvr~~~n------l~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlP 242 (342)
T COG1077 178 SSSVRVGGDKMDEAIIVYVRKKYN------LLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLP 242 (342)
T ss_pred EeeEEEecchhhHHHHHHHHHHhC------eeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCC
Confidence 122379999999999999998864 22221 3478888776432 223444456777888
Q ss_pred eEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCccE-EEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhH
Q 004058 330 FRSSITRQKFEELCEDLWERSLVPLREVLNYSG--LKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAI 406 (776)
Q Consensus 330 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deav 406 (776)
-.++++-+++.+.+++.+++|.+.++..|+... +..+-++. ++|+||++.+..+.+.|.+..+. ++....+|-.||
T Consensus 243 k~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~-pv~ia~~pL~~V 321 (342)
T COG1077 243 KTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGV-PVIIADDPLTCV 321 (342)
T ss_pred eeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCC-eEEECCChHHHH
Confidence 889999999999999999999999999999863 33444455 99999999999999999999886 666788999999
Q ss_pred HhHHHHHHHHhc
Q 004058 407 VLGASLLAANLS 418 (776)
Q Consensus 407 a~GAa~~aa~ls 418 (776)
|.|+.+....+.
T Consensus 322 a~G~G~~le~~~ 333 (342)
T COG1077 322 AKGTGKALEALD 333 (342)
T ss_pred HhccchhhhhhH
Confidence 999998876654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=2.6e-25 Score=232.00 Aligned_cols=202 Identities=16% Similarity=0.226 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEE
Q 004058 139 EELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (776)
Q Consensus 139 eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (776)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~--------~~ 137 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID--------NG 137 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC--------Cc
Confidence 4567788999999999988888999999999999999999999999999999999999999999987542 15
Q ss_pred EEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 004058 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (776)
Q Consensus 219 lV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 298 (776)
+++|+||||||+++++ .+.+ .. ..+..+||++||+.|++++. .+
T Consensus 138 ~vvDIGggtt~i~v~~--------------~g~~--~~-~~~~~~GG~~it~~Ia~~l~----------i~--------- 181 (267)
T PRK15080 138 AVVDIGGGTTGISILK--------------DGKV--VY-SADEPTGGTHMSLVLAGAYG----------IS--------- 181 (267)
T ss_pred EEEEeCCCcEEEEEEE--------------CCeE--EE-EecccCchHHHHHHHHHHhC----------CC---------
Confidence 8999999999999984 3332 22 24668999999999987642 11
Q ss_pred HHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc
Q 004058 299 KLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT 378 (776)
Q Consensus 299 kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s 378 (776)
+.+||++|+.++ +++++.++++++++++.+.+++.++.. .++.|+|+||+|
T Consensus 182 --~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s 232 (267)
T PRK15080 182 --FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTC 232 (267)
T ss_pred --HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcc
Confidence 467899988653 357889999999999999999999853 678999999999
Q ss_pred CcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHH
Q 004058 379 RVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 379 riP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~a 414 (776)
++|.+++.+++.|+. ++....||+.++|.|||++|
T Consensus 233 ~lpgl~e~l~~~lg~-~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 233 CLPGFEEVFEKQTGL-PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred cchhHHHHHHHHhCC-CcccCCCchHHHHHHHHhhC
Confidence 999999999999986 67778999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.88 E-value=8.6e-21 Score=208.85 Aligned_cols=195 Identities=18% Similarity=0.242 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEE
Q 004058 175 AERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQV 254 (776)
Q Consensus 175 ~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v 254 (776)
...+.+.+|++.||+++..++.||.|+|++|.... ..+..++|+|+||||||+++++ .+.+..
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~---~~~~~~~vvDiG~gtt~i~i~~--------------~g~~~~ 220 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED---EKELGVCLIDIGGGTTDIAVYT--------------GGSIRY 220 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc---hhcCCEEEEEeCCCcEEEEEEE--------------CCEEEE
Confidence 45677888999999999999999999999885432 2346799999999999999994 232221
Q ss_pred EEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC------CceeEEEeecccCc
Q 004058 255 KDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------TMAPISVESLYVDI 328 (776)
Q Consensus 255 ~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~------~~~~i~i~~l~~~~ 328 (776)
.....+||++||+.|.+.+. ..+.+||++|+.++.. .+..+.++.+. .
T Consensus 221 ---~~~i~~GG~~it~~i~~~l~---------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~ 274 (371)
T TIGR01174 221 ---TKVIPIGGNHITKDIAKALR---------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--E 274 (371)
T ss_pred ---EeeecchHHHHHHHHHHHhC---------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--C
Confidence 23347999999998875431 1257899999998763 24556666543 3
Q ss_pred ceEEEeeHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCccE-EEEecCccCcHHHHHHHHHHhCCC-ccCC-------
Q 004058 329 DFRSSITRQKFEELCEDLWERSLVPLR-EVLNYSGLKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRT-ELDR------- 398 (776)
Q Consensus 329 d~~~~itr~efe~l~~~~~~~i~~~i~-~~l~~a~~~~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~-~i~~------- 398 (776)
+....|+|++|++++++.++++...++ +.|+.++.. .+++. |+|+||+|++|.+++.+++.|+.. ++..
T Consensus 275 ~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~ 353 (371)
T TIGR01174 275 RPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGL 353 (371)
T ss_pred CCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCc
Confidence 556799999999999999999999997 999998876 67776 999999999999999999999864 1111
Q ss_pred ---CCCcchhHHhHHHHH
Q 004058 399 ---HLDADEAIVLGASLL 413 (776)
Q Consensus 399 ---~~n~deava~GAa~~ 413 (776)
.-+|..++|.|.++|
T Consensus 354 ~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 354 TEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred hhhcCCcHHHHHHHHHhC
Confidence 126778888888754
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.85 E-value=4e-19 Score=197.91 Aligned_cols=197 Identities=17% Similarity=0.159 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEE
Q 004058 177 RKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKD 256 (776)
Q Consensus 177 R~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~ 256 (776)
.+.+.+|++.|||++..++.||.|+|.++.... +.+..++++|+||||||++++. .+.+.
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~---e~~~gv~vvDiGggtTdisv~~--------------~G~l~--- 227 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED---ERELGVCVVDIGGGTMDIAVYT--------------GGALR--- 227 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh---hhhcCeEEEEeCCCceEEEEEE--------------CCEEE---
Confidence 334467999999999999999999999985543 3356799999999999999994 33322
Q ss_pred eecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccC------CCceeEEEeecccCcce
Q 004058 257 VRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSA------NTMAPISVESLYVDIDF 330 (776)
Q Consensus 257 ~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~------~~~~~i~i~~l~~~~d~ 330 (776)
......+||++|++.|++.+. . -..+||++|..... .....+.++.+.+...
T Consensus 228 ~~~~i~~GG~~it~dIa~~l~----------i-----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~~- 285 (420)
T PRK09472 228 HTKVIPYAGNVVTSDIAYAFG----------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPP- 285 (420)
T ss_pred EEeeeechHHHHHHHHHHHhC----------c-----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCCC-
Confidence 222347899999988875441 1 14689999966432 1244566665443332
Q ss_pred EEEeeHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC-ccCC----
Q 004058 331 RSSITRQKFEELCEDLWERSLVPLR-------EVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT-ELDR---- 398 (776)
Q Consensus 331 ~~~itr~efe~l~~~~~~~i~~~i~-------~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-~i~~---- 398 (776)
..++|.+|.+++.+.++++...|+ ..|..+++....++.|+|+||++++|.|++.+++.|+.. .+..
T Consensus 286 -~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~ 364 (420)
T PRK09472 286 -RSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNI 364 (420)
T ss_pred -eEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCccc
Confidence 489999999999996666666665 455667777778999999999999999999999999864 1111
Q ss_pred ------CCCcchhHHhHHHHHHHH
Q 004058 399 ------HLDADEAIVLGASLLAAN 416 (776)
Q Consensus 399 ------~~n~deava~GAa~~aa~ 416 (776)
..+|..++|.|.++++..
T Consensus 365 ~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 365 TGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred CCChhhcCCcHHHHHHHHHHHhhh
Confidence 247999999999999774
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.71 E-value=4e-15 Score=161.33 Aligned_cols=207 Identities=24% Similarity=0.273 Sum_probs=164.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeecccccc
Q 004058 164 FVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVY 243 (776)
Q Consensus 164 ~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~ 243 (776)
.++|+|..+ -+.+.+|.+.+|+++..++-+|.|+|.+...+. ++.-.++++|+||||||+++++
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d---EkelGv~lIDiG~GTTdIai~~--------- 221 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED---EKELGVALIDIGGGTTDIAIYK--------- 221 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc---cHhcCeEEEEeCCCcEEEEEEE---------
Confidence 467777665 456889999999999999999999998765443 4457899999999999999994
Q ss_pred CceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC------Cce
Q 004058 244 GKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------TMA 317 (776)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~------~~~ 317 (776)
.+.+. +.+.-.+||++++..|+.-|.-. +..||++|...... .+.
T Consensus 222 -----~G~l~---~~~~ipvgG~~vT~DIa~~l~t~---------------------~~~AE~iK~~~g~a~~~~~~~~~ 272 (418)
T COG0849 222 -----NGALR---YTGVIPVGGDHVTKDIAKGLKTP---------------------FEEAERIKIKYGSALISLADDEE 272 (418)
T ss_pred -----CCEEE---EEeeEeeCccHHHHHHHHHhCCC---------------------HHHHHHHHHHcCccccCcCCCcc
Confidence 44332 22334799999999988665322 46788888887432 344
Q ss_pred eEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC-cc
Q 004058 318 PISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT-EL 396 (776)
Q Consensus 318 ~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-~i 396 (776)
.+.++.+.++. ...+||.++.+++++-+.++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+.. ++
T Consensus 273 ~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRi 350 (418)
T COG0849 273 TIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRL 350 (418)
T ss_pred eEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEe
Confidence 57777655544 5689999999999999999999999999999998677789999999999999999999999864 22
Q ss_pred CC----------CCCcchhHHhHHHHHHHHh
Q 004058 397 DR----------HLDADEAIVLGASLLAANL 417 (776)
Q Consensus 397 ~~----------~~n~deava~GAa~~aa~l 417 (776)
.. ..+|..+.|.|..+++...
T Consensus 351 g~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 351 GVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred CCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 22 2367889999999988753
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.59 E-value=1.9e-14 Score=158.88 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccccCCCCCCcEE
Q 004058 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (776)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (776)
+.+..+++++...... ....-..+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++. .+-
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~--------~~~ 145 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR--------TTG 145 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC--------CeE
Confidence 3445666666543211 111235699999999998888888775 666899999999999999998753 568
Q ss_pred EEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 004058 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (776)
Q Consensus 219 lV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 298 (776)
+|+|+|+++|+++.+. .|.+ +........+||.++|+.|.+++..... ..+..
T Consensus 146 lVVDiG~~~t~i~pv~--------------~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~-----~~~~~------- 198 (371)
T cd00012 146 LVVDSGDGVTHVVPVY--------------DGYV-LPHAIKRLDLAGRDLTRYLKELLRERGY-----ELNSS------- 198 (371)
T ss_pred EEEECCCCeeEEEEEE--------------CCEE-chhhheeccccHHHHHHHHHHHHHhcCC-----Cccch-------
Confidence 9999999999998883 3322 1222233479999999999998865421 11111
Q ss_pred HHHHHHHHHhhhccCCCc---e-----------eEEEeecccCcceEEEeeHHHHHHHHHHHHH---------HHHHHHH
Q 004058 299 KLKKQVKRTKEILSANTM---A-----------PISVESLYVDIDFRSSITRQKFEELCEDLWE---------RSLVPLR 355 (776)
Q Consensus 299 kL~~~~e~~K~~Ls~~~~---~-----------~i~i~~l~~~~d~~~~itr~efe~l~~~~~~---------~i~~~i~ 355 (776)
.-...++.+|+.+..-.. . ....-.+.++ ..+.++.+.| .+.+.+++ .+.+.|.
T Consensus 199 ~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~ 275 (371)
T cd00012 199 DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIY 275 (371)
T ss_pred hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHH
Confidence 113345666666432110 0 0000112222 2345665544 22333333 6778888
Q ss_pred HHHHHCCC--CCCCccEEEEecCccCcHHHHHHHHHHhCCC---------ccCCCCCcchhHHhHHHHHHHH
Q 004058 356 EVLNYSGL--KMDEIYAVELIGGGTRVPKLQAKLQEYLGRT---------ELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 356 ~~l~~a~~--~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~---------~i~~~~n~deava~GAa~~aa~ 416 (776)
+++..... ...-.+.|+|+||+|++|.+.+.|.+.+... .+....+|..++-+||+++|..
T Consensus 276 ~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 276 SSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88877642 2334578999999999999999998876521 2334567888999999999864
No 34
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.54 E-value=1.1e-12 Score=142.00 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=136.6
Q ss_pred EEEEcCCCCCHHHH-HHHHHHHHHh------C------CceeeecchhHHHHHHhccccCC-----CCCCcEEEEEEecC
Q 004058 164 FVISVPPYFGQAER-KGLMQAAELA------G------MNVLSLVNEHSGAALQYGIDKDF-----SNESRHVVFYDMGA 225 (776)
Q Consensus 164 ~VitVPa~f~~~qR-~~l~~Aa~~A------G------l~~~~li~Ep~AAAl~y~~~~~~-----~~~~~~vlV~D~Gg 225 (776)
++...|..+-..++ +.+++..... | ++.+.++.||.+|.+.+...... ......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 34589998855453 6676554211 1 12367899999998877664310 11345789999999
Q ss_pred ccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004058 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVK 305 (776)
Q Consensus 226 gT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e 305 (776)
||||++++. .+.+. ....+....|..++.+.|.+++..+. ++..+. .. ++.+.
T Consensus 195 ~TtD~~v~~--------------~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~-----~~~~~~--~~---~ie~~-- 247 (344)
T PRK13917 195 GTTDLDTIQ--------------NLKRV-EEESFVIPKGTIDVYKRIASHISKKE-----EGASIT--PY---MLEKG-- 247 (344)
T ss_pred CcEEEEEEe--------------CcEEc-ccccccccchHHHHHHHHHHHHHhhC-----CCCCCC--HH---HHHHH--
Confidence 999999983 22222 23333457899999999988886443 232222 11 12111
Q ss_pred HHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHH
Q 004058 306 RTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQA 385 (776)
Q Consensus 306 ~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~ 385 (776)
|... .+.+ ..+.+ +.+ ++++.++++++++++...|...+.. ..+++.|+|+||++++ +++
T Consensus 248 -----l~~g---~i~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~ 307 (344)
T PRK13917 248 -----LEYG---ACKL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFD 307 (344)
T ss_pred -----HHcC---cEEe---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHH
Confidence 1111 1111 11111 122 5668889999999999888888853 3588999999999987 889
Q ss_pred HHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcC
Q 004058 386 KLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (776)
Q Consensus 386 ~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~ 419 (776)
.|++.|+. +....||..|-|+|...+|..+.+
T Consensus 308 ~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 308 SLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 99999985 456789999999999999876543
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.53 E-value=3.7e-14 Score=133.23 Aligned_cols=195 Identities=18% Similarity=0.236 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEe
Q 004058 144 MVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDM 223 (776)
Q Consensus 144 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~ 223 (776)
.+.+.+++.++.++|..+....-++|+.-.+...+...+..+.||++++..++||||||.-..++ .-.|+|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~--------dg~VVDi 147 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD--------DGGVVDI 147 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC--------CCcEEEe
Confidence 46788999999999999999999999998777778888889999999999999999998644332 2478999
Q ss_pred cCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 004058 224 GATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQ 303 (776)
Q Consensus 224 GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~ 303 (776)
|||||-+++++ .|. |+ +..|..-||..+...|+.+ ++++ +++
T Consensus 148 GGGTTGIsi~k--------------kGk--Vi-y~ADEpTGGtHmtLvlAG~----------ygi~-----------~Ee 189 (277)
T COG4820 148 GGGTTGISIVK--------------KGK--VI-YSADEPTGGTHMTLVLAGN----------YGIS-----------LEE 189 (277)
T ss_pred CCCcceeEEEE--------------cCc--EE-EeccCCCCceeEEEEEecc----------cCcC-----------HhH
Confidence 99999999995 333 22 3345678888877665432 3333 355
Q ss_pred HHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHH
Q 004058 304 VKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKL 383 (776)
Q Consensus 304 ~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v 383 (776)
||..|..--... |.=..++|+++++.+.+...++..+ +..+.|+||+|.-|.+
T Consensus 190 AE~~Kr~~k~~~----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~ 242 (277)
T COG4820 190 AEQYKRGHKKGE----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGV 242 (277)
T ss_pred HHHhhhccccch----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccH
Confidence 666664321111 1112367999999999999887654 5569999999999999
Q ss_pred HHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 384 QAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 384 ~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
.+.+++.|+- ++..+..|....-+|-|+
T Consensus 243 e~~Fe~~l~l-~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 243 EELFEKQLAL-QVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred HHHHHHHhcc-ccccCCCcceechhhhhh
Confidence 9999999965 666666666666666653
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.51 E-value=3.6e-13 Score=148.84 Aligned_cols=238 Identities=15% Similarity=0.148 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHH-HHhCCceeeecchhHHHHHHhccccCCCCCCcEE
Q 004058 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (776)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (776)
+.+..+++++...... ....-..++++.|...+..+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+-
T Consensus 75 ~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g--------~~~~ 145 (373)
T smart00268 75 DDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG--------RTTG 145 (373)
T ss_pred HHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC--------CCEE
Confidence 4556677766653111 1112346899999999999999998886 5679999999999999998875 2578
Q ss_pred EEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 004058 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (776)
Q Consensus 219 lV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 298 (776)
+|+|+|+++|+++.+. +|.. +........+||.++|+.|.+++...- ......
T Consensus 146 lVVDiG~~~t~v~pv~--------------~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~-----~~~~~~------- 198 (373)
T smart00268 146 LVIDSGDGVTHVVPVV--------------DGYV-LPHAIKRIDIAGRDLTDYLKELLSERG-----YQFNSS------- 198 (373)
T ss_pred EEEecCCCcceEEEEE--------------CCEE-chhhheeccCcHHHHHHHHHHHHHhcC-----CCCCcH-------
Confidence 9999999999999983 2221 222222347999999999998876521 111110
Q ss_pred HHHHHHHHHhhhccCCC-----------------ceeEEEeecccCcceEEEeeHHHH---HHHHHHH-----HHHHHHH
Q 004058 299 KLKKQVKRTKEILSANT-----------------MAPISVESLYVDIDFRSSITRQKF---EELCEDL-----WERSLVP 353 (776)
Q Consensus 299 kL~~~~e~~K~~Ls~~~-----------------~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~~-----~~~i~~~ 353 (776)
.-...++.+|+.+..-. ...... .+.++..+ .+..+.| |.++.|. ...+.+.
T Consensus 199 ~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~lpdg~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~ 275 (373)
T smart00268 199 AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY-ELPDGNTI--KVGNERFRIPEILFKPELIGLEQKGIHEL 275 (373)
T ss_pred HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE-ECCCCCEE--EEChHHeeCchhcCCchhcCCCcCCHHHH
Confidence 11234455555542110 000001 12233333 3333332 1222221 2356777
Q ss_pred HHHHHHHCCCC--CCCccEEEEecCccCcHHHHHHHHHHhCCC-------ccCCCCCcchhHHhHHHHHHHH
Q 004058 354 LREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 354 i~~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-------~i~~~~n~deava~GAa~~aa~ 416 (776)
|.++|..+... ..=.+.|+|+||+|++|.+.++|.+.+... .+..+.++..++=.||+++|..
T Consensus 276 i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 276 VYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 77887765322 222366999999999999999998776321 2333445566777788777654
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.31 E-value=1.4e-10 Score=129.64 Aligned_cols=226 Identities=11% Similarity=0.067 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHH-HHhCCceeeecchhHHHHHHhccccCCC--CCCc
Q 004058 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFS--NESR 216 (776)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~--~~~~ 216 (776)
+.+..+++|+..... .....-..+++|.|..++..+|+.+.+.+ +..+++-+.+..+|.+|++++....... ....
T Consensus 82 d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 345556666543211 11112235899999999999999988875 4458888899999999998763322100 0234
Q ss_pred EEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 004058 217 HVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKA 296 (776)
Q Consensus 217 ~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~ 296 (776)
+-||+|+|+|+|+++.+- .|.. +........+||.++|+.|.++|.++- ..+...
T Consensus 161 tglVVDiG~~~T~i~PV~--------------~G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-------~~~~~~--- 215 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVV--------------DGYV-IGSSIKHIPLAGRDITNFIQQMLRERG-------EPIPAE--- 215 (414)
T ss_pred eEEEEECCCCceEEEEEE--------------CCEE-cccceEEecCcHHHHHHHHHHHHHHcC-------CCCCcH---
Confidence 569999999999998772 2221 111112237999999999999886431 122111
Q ss_pred HHHHHHHHHHHhhhccCCC-----------------ceeEEEeecccCcceEEEeeHHHHHH---HHHHHH------HHH
Q 004058 297 MAKLKKQVKRTKEILSANT-----------------MAPISVESLYVDIDFRSSITRQKFEE---LCEDLW------ERS 350 (776)
Q Consensus 297 ~~kL~~~~e~~K~~Ls~~~-----------------~~~i~i~~l~~~~d~~~~itr~efe~---l~~~~~------~~i 350 (776)
..+..++.+|+.++.-. ...+..+...++....+.|..+.|.- ++.|-+ ..+
T Consensus 216 --~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl 293 (414)
T PTZ00280 216 --DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPL 293 (414)
T ss_pred --HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCH
Confidence 11234566666653211 01122222222344567787777642 344421 145
Q ss_pred HHHHHHHHHHCCCC--CCCccEEEEecCccCcHHHHHHHHHHhCC
Q 004058 351 LVPLREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (776)
Q Consensus 351 ~~~i~~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (776)
.++|.++|.++... ..=.+.|+|+||+|.+|.+.++|++.+..
T Consensus 294 ~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 294 PEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred HHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 67777777766432 22346799999999999999999987753
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.30 E-value=1.7e-10 Score=124.29 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=128.4
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHh---------CCceeeecchhHHHHHHhccccC-CCCCCcEEEEEEecCccce
Q 004058 160 AVKDFVISVPPYFGQAERKGLMQAAELA---------GMNVLSLVNEHSGAALQYGIDKD-FSNESRHVVFYDMGATTTY 229 (776)
Q Consensus 160 ~~~~~VitVPa~f~~~qR~~l~~Aa~~A---------Gl~~~~li~Ep~AAAl~y~~~~~-~~~~~~~vlV~D~GggT~d 229 (776)
.+..+|+..|..+...||+.+++...-. -++.+.++.||.+|.+.|..... .......++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999999999998876521 22346889999999888765421 1124567899999999999
Q ss_pred eeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhh
Q 004058 230 AALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKE 309 (776)
Q Consensus 230 vsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~ 309 (776)
+.+++ +..+ +....+....|-.++-+.|.+.+.+++ +.+.......+.. +...-|.
T Consensus 181 ~~~~~--------------~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~------g~~~~~~~~~i~~---~l~~g~~ 236 (320)
T TIGR03739 181 WLVAR--------------GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI------GTPAYRDIDRIDL---ALRTGKQ 236 (320)
T ss_pred eehcc--------------CCEE-cccccCCchhHHHHHHHHHHHHHHhhc------CCCCccCHHHHHH---HHHhCCc
Confidence 98872 2333 334445557898888888887777664 3221111111111 1111110
Q ss_pred hccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHH
Q 004058 310 ILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQE 389 (776)
Q Consensus 310 ~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~ 389 (776)
+.+ .+. .+.|+ +.++ ..+..++++..-+...+ + ...+++.|+|+||++. .+++.|++
T Consensus 237 ---------~~~----~gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~ 293 (320)
T TIGR03739 237 ---------PRI----YQK--PVDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKA 293 (320)
T ss_pred ---------eee----cce--ecCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHH
Confidence 001 111 11222 1122 23333333333333333 2 1246889999999988 66899999
Q ss_pred HhCCCccCCCCCcchhHHhHHHHHH
Q 004058 390 YLGRTELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 390 ~f~~~~i~~~~n~deava~GAa~~a 414 (776)
.|+...+....||..|-|+|-..+|
T Consensus 294 ~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 294 AFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HCCCCeeEecCCcHHHHHHHHHHhh
Confidence 9987555567799999999987665
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.24 E-value=1.6e-10 Score=128.89 Aligned_cols=312 Identities=16% Similarity=0.181 Sum_probs=175.5
Q ss_pred CcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCC-----ceEEcHhHHHhHhhCcchHHHHHHHhh
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHES-----TRLLGEEASGIIARYPHRVYSQLRDMI 98 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (776)
..+|-||+|+.++++++. .+. .|-. .+||++..... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~a--ge~-~P~~---------v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~----------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFA--GED-LPRV---------VIPSVVGRPRDKNSSNDYYVGDEALSP---RS----------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEET--TSS-S-SE---------EEESEEEEESSSSSSSSCEETHHHHHT---GT-----------
T ss_pred CCEEEEECCCceEEEEEC--CCC-CCCC---------cCCCccccccccccceeEEeecccccc---hh-----------
Confidence 457899999999999997 332 3432 35777776432 35677763220 00
Q ss_pred CCCchhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHH
Q 004058 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERK 178 (776)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~ 178 (776)
.+.+ ...+.+|.... -+.+..+++++..... .....-..++++.|..++..+|+
T Consensus 58 ----------------~~~~--------~~p~~~g~i~~-~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 58 ----------------NLEL--------RSPIENGVIVD-WDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp ----------------GEEE--------EESEETTEESS-HHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHH
T ss_pred ----------------heee--------eeecccccccc-cccccccccccccccc-ccccccceeeeeccccCCchhhh
Confidence 0000 00011222122 2345556666655321 11222346999999999999999
Q ss_pred HHHHHH-HHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEe
Q 004058 179 GLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDV 257 (776)
Q Consensus 179 ~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (776)
.+.+.+ +..|++-+.+++++.+|+++++.. +-||+|+|.+.|.++-+- +|.. +...
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~--------tglVVD~G~~~t~v~pV~--------------dG~~-~~~~ 168 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT--------TGLVVDIGYSSTSVVPVV--------------DGYV-LPHS 168 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS--------SEEEEEESSS-EEEEEEE--------------TTEE--GGG
T ss_pred hhhhhhhcccccceeeeeecccccccccccc--------cccccccceeeeeeeeee--------------eccc-cccc
Confidence 887764 456889999999999999887543 469999999999988772 2221 1111
Q ss_pred ecCCCCchHHHHHHHHHHHHHH-HhhhcCCCCC---CC-CCHHHHHHHHHHHHHHhhhcc---------------CCCce
Q 004058 258 RWDAELGGQNMELRLVEYFADE-FNKQVGNGVD---VR-KSPKAMAKLKKQVKRTKEILS---------------ANTMA 317 (776)
Q Consensus 258 ~~~~~lGG~~~D~~l~~~l~~~-~~~~~~~~~d---~~-~~~~~~~kL~~~~e~~K~~Ls---------------~~~~~ 317 (776)
.....+||.++++.|.+++..+ +.-...+... .. ........-...++.+|+.+. .....
T Consensus 169 ~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 248 (393)
T PF00022_consen 169 IKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEK 248 (393)
T ss_dssp BEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTE
T ss_pred cccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccce
Confidence 1123799999999999998874 1110000000 00 001001111222333333321 11122
Q ss_pred eEEEeecccCcceEEEeeHHHHHHHHHHHHH----------------HHHHHHHHHHHHCCCCCC--CccEEEEecCccC
Q 004058 318 PISVESLYVDIDFRSSITRQKFEELCEDLWE----------------RSLVPLREVLNYSGLKMD--EIYAVELIGGGTR 379 (776)
Q Consensus 318 ~i~i~~l~~~~d~~~~itr~efe~l~~~~~~----------------~i~~~i~~~l~~a~~~~~--~i~~V~LvGG~sr 379 (776)
.+.+ .++. .+.+..+.|. +.+.+|+ .+.++|.+++........ -.+.|+|+||+|+
T Consensus 249 ~~~l---Pdg~--~i~~~~er~~-~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~ 322 (393)
T PF00022_consen 249 SYEL---PDGQ--TIILGKERFR-IPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSL 322 (393)
T ss_dssp EEE----TTSS--EEEESTHHHH-HHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGG
T ss_pred eccc---cccc--cccccccccc-ccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccccc
Confidence 2222 2443 4566655552 2333333 577888888877653321 2478999999999
Q ss_pred cHHHHHHHHHHhCC-------CccCCCC-CcchhHHhHHHHHHHH
Q 004058 380 VPKLQAKLQEYLGR-------TELDRHL-DADEAIVLGASLLAAN 416 (776)
Q Consensus 380 iP~v~~~l~~~f~~-------~~i~~~~-n~deava~GAa~~aa~ 416 (776)
+|.+.++|.+.+.. -++.... ++..++=.||+++|..
T Consensus 323 i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 323 IPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp STTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 99999999876543 1334444 7889999999999875
No 40
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.11 E-value=1.6e-08 Score=110.84 Aligned_cols=162 Identities=15% Similarity=0.203 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHhCCceeeecchhHHHHHHhcc-cc--CCCCCCc-EEEEEEecCccceeeEEEEeeccccccCceecc
Q 004058 174 QAERKGLMQAAELAGMNVLSLVNEHSGAALQYGI-DK--DFSNESR-HVVFYDMGATTTYAALVYFSAYNAKVYGKTVSV 249 (776)
Q Consensus 174 ~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~-~~--~~~~~~~-~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~ 249 (776)
....+.+.++++.||+++..+.-+|.|.+-.+.. .. ....... .++++|+|+++|+++++. +
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--------------~ 207 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--------------P 207 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--------------C
Confidence 3557778899999999999999899987655521 10 0011223 499999999999999994 3
Q ss_pred CeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcc
Q 004058 250 NQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDID 329 (776)
Q Consensus 250 ~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d 329 (776)
+.+.. .....+||.+|++.|.+.+ +.+ ...||+.|..-.... ..
T Consensus 208 g~~~~---~r~i~~G~~~i~~~i~~~~----------~~~-----------~~~Ae~~k~~~~~~~-----------~~- 251 (348)
T TIGR01175 208 GRMLF---TREVPFGTRQLTSELSRAY----------GLN-----------PEEAGEAKQQGGLPL-----------LY- 251 (348)
T ss_pred CeEEE---EEEeechHHHHHHHHHHHc----------CCC-----------HHHHHHHHhcCCCCC-----------ch-
Confidence 43222 2234799999998886432 222 366777776432111 00
Q ss_pred eEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCccEEEEecCccCcHHHHHHHHHHhCCC
Q 004058 330 FRSSITRQKFEELCEDLWERSLVPLREVLNYS--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT 394 (776)
Q Consensus 330 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a--~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~ 394 (776)
-.+++++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+-.
T Consensus 252 ---------~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~ 309 (348)
T TIGR01175 252 ---------DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLP 309 (348)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCC
Confidence 02345566666666666666432 223446899999999999999999999999853
No 41
>PTZ00452 actin; Provisional
Probab=99.09 E-value=3.2e-09 Score=116.75 Aligned_cols=234 Identities=18% Similarity=0.136 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHH-HHhCCceeeecchhHHHHHHhccccCCCCCCcEEE
Q 004058 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (776)
Q Consensus 141 l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vl 219 (776)
.+..+++|+..... .....-..+++|-|+..+..+|+.+.+.. +.-+.+.+.+.+.+.+++++++. .+-|
T Consensus 81 ~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~--------~tgl 151 (375)
T PTZ00452 81 DIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK--------TIGL 151 (375)
T ss_pred HHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC--------ceee
Confidence 34456666543211 12222356899999999999999987764 45688888889999988877542 4569
Q ss_pred EEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 004058 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (776)
Q Consensus 220 V~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~k 299 (776)
|+|+|.|.+.++-+- +|.. +.......++||.++++.|.+.|... +..+.... .
T Consensus 152 VVDiG~~~t~v~PV~--------------dG~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-------~~~~~~~~-~--- 205 (375)
T PTZ00452 152 VVDSGEGVTHCVPVF--------------EGHQ-IPQAITKINLAGRLCTDYLTQILQEL-------GYSLTEPH-Q--- 205 (375)
T ss_pred eecCCCCcceEEEEE--------------CCEE-eccceEEeeccchHHHHHHHHHHHhc-------CCCCCCHH-H---
Confidence 999999999987772 2321 11222223799999999988877532 11221110 0
Q ss_pred HHHHHHHHhhhccCCC----------------ceeEEEeecccCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHH
Q 004058 300 LKKQVKRTKEILSANT----------------MAPISVESLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLR 355 (776)
Q Consensus 300 L~~~~e~~K~~Ls~~~----------------~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~ 355 (776)
+..++.+|+.++.-. ..... |.++. .+.+..+.| |-+++|.+ ..+.++|.
T Consensus 206 -~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~ 279 (375)
T PTZ00452 206 -RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAY 279 (375)
T ss_pred -HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHH
Confidence 112344444443111 01111 23443 346666666 22333422 23567777
Q ss_pred HHHHHCCCC--CCCccEEEEecCccCcHHHHHHHHHHhCC----C---ccCCCCCcchhHHhHHHHHHH
Q 004058 356 EVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR----T---ELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 356 ~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~----~---~i~~~~n~deava~GAa~~aa 415 (776)
+++..+... ..=.+.|+|+||+|.+|.+.++|++.+.. . ++..+.+...++=.|++++|.
T Consensus 280 ~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 280 SSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 777765432 22346899999999999999998866532 1 233344555677778888875
No 42
>PTZ00281 actin; Provisional
Probab=99.09 E-value=1.9e-09 Score=118.76 Aligned_cols=238 Identities=14% Similarity=0.149 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEE
Q 004058 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (776)
Q Consensus 141 l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vl 219 (776)
.+..++.|+..... .....-..+++|-|..+...+|+.+.+. .+..+++-+.+...|.+++++++. .+-+
T Consensus 82 ~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--------~tgl 152 (376)
T PTZ00281 82 DMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--------TTGI 152 (376)
T ss_pred HHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC--------ceEE
Confidence 34455565543110 1122234688899999999999998875 566788888999999999877542 3679
Q ss_pred EEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 004058 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (776)
Q Consensus 220 V~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~k 299 (776)
|+|+|.+.|.++-+- .|. .+........+||.++++.|.+.|... +..+.. . .-
T Consensus 153 VVDiG~~~t~v~PV~--------------dG~-~~~~~~~~~~~GG~~lt~~L~~lL~~~-------~~~~~~-~-~~-- 206 (376)
T PTZ00281 153 VMDSGDGVSHTVPIY--------------EGY-ALPHAILRLDLAGRDLTDYMMKILTER-------GYSFTT-T-AE-- 206 (376)
T ss_pred EEECCCceEEEEEEE--------------ecc-cchhheeeccCcHHHHHHHHHHHHHhc-------CCCCCc-H-HH--
Confidence 999999999987552 221 122222234799999999998877542 111111 0 01
Q ss_pred HHHHHHHHhhhccCCC---c---------eeEEE-eecccCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHH
Q 004058 300 LKKQVKRTKEILSANT---M---------APISV-ESLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLREVL 358 (776)
Q Consensus 300 L~~~~e~~K~~Ls~~~---~---------~~i~i-~~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l 358 (776)
...++.+|+.++--. . ..... -.|.++. .+.|..+.| |-+++|.+ ..+.++|.+++
T Consensus 207 -~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI 283 (376)
T PTZ00281 207 -REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSI 283 (376)
T ss_pred -HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHH
Confidence 123555566543111 0 00000 1122333 345555544 22334321 14566777777
Q ss_pred HHCCCC--CCCccEEEEecCccCcHHHHHHHHHHhCCC-------ccCCCCCcchhHHhHHHHHHHH
Q 004058 359 NYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 359 ~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-------~i~~~~n~deava~GAa~~aa~ 416 (776)
..+... ..-.+.|+|+||+|.+|.+.++|+..+... ++..+.++..++=+||+++|..
T Consensus 284 ~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 284 MKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 765432 222467999999999999999888665321 2334456677888888888763
No 43
>PTZ00004 actin-2; Provisional
Probab=99.08 E-value=2.5e-09 Score=118.05 Aligned_cols=235 Identities=14% Similarity=0.136 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccccCCCCCCcEE
Q 004058 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (776)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (776)
+.+..++.|+...-. .....-..+++|-|..++..+|+.+.+. .+..|++.+.++.+|.+|+++++. .+-
T Consensus 81 d~~e~i~~~~~~~~l-~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------~tg 151 (378)
T PTZ00004 81 DDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------TTG 151 (378)
T ss_pred HHHHHHHHHHHHhhc-ccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC--------ceE
Confidence 344556666432110 0122234588999999999999887776 456789989999999999887642 356
Q ss_pred EEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 004058 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMA 298 (776)
Q Consensus 219 lV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 298 (776)
+|+|+|.+.|+++-+- +|.. +.......++||.++++.|.+.+... +..+... ..
T Consensus 152 lVVDiG~~~t~v~pV~--------------dG~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-------~~~~~~~--~~- 206 (378)
T PTZ00004 152 IVLDSGDGVSHTVPIY--------------EGYS-LPHAIHRLDVAGRDLTEYMMKILHER-------GTTFTTT--AE- 206 (378)
T ss_pred EEEECCCCcEEEEEEE--------------CCEE-eecceeeecccHHHHHHHHHHHHHhc-------CCCCCcH--HH-
Confidence 9999999999998772 2322 22222234799999999999887542 1111111 11
Q ss_pred HHHHHHHHHhhhccCCC-----------------ceeEEEeecccCcceEEEeeHHHHH---HHHHHH------HHHHHH
Q 004058 299 KLKKQVKRTKEILSANT-----------------MAPISVESLYVDIDFRSSITRQKFE---ELCEDL------WERSLV 352 (776)
Q Consensus 299 kL~~~~e~~K~~Ls~~~-----------------~~~i~i~~l~~~~d~~~~itr~efe---~l~~~~------~~~i~~ 352 (776)
...++..|+.+..-. ...+. |.++.. +.|..+.|. -++.|- ...+.+
T Consensus 207 --~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~ 279 (378)
T PTZ00004 207 --KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHE 279 (378)
T ss_pred --HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHH
Confidence 122444554432110 11111 233432 355555542 344442 234567
Q ss_pred HHHHHHHHCCCC--CCCccEEEEecCccCcHHHHHHHHHHhCC----C---ccCCCCCcchhHHhHHHHHHH
Q 004058 353 PLREVLNYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGR----T---ELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 353 ~i~~~l~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~----~---~i~~~~n~deava~GAa~~aa 415 (776)
+|.+++.++..+ ..-...|+|+||+|.+|.+.++|+..+.. . ++..+.++..++=.||+++|.
T Consensus 280 ~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 280 LTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 777777766432 22346799999999999999999876532 1 233344566677778887765
No 44
>PTZ00466 actin-like protein; Provisional
Probab=99.03 E-value=1.1e-08 Score=112.57 Aligned_cols=235 Identities=12% Similarity=0.099 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEE
Q 004058 141 LLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVV 219 (776)
Q Consensus 141 l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vl 219 (776)
.+..+++|+.+... ....-..+++|-|+.++..+|+.+.+. .+..+++.+.+.+.|.+|+++++. .+-+
T Consensus 88 ~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~--------~tgl 157 (380)
T PTZ00466 88 DMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK--------TNGT 157 (380)
T ss_pred HHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC--------ceEE
Confidence 34455555543211 122234588899999999999998776 455688888899999999877642 4679
Q ss_pred EEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 004058 220 FYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAK 299 (776)
Q Consensus 220 V~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~k 299 (776)
|+|+|.+.|.++-+- .|.. +........+||.++++.|.+.+.+. . +..+.. .
T Consensus 158 VVD~G~~~t~v~PV~--------------~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~--~~~~~~-------~ 210 (380)
T PTZ00466 158 VLDCGDGVCHCVSIY--------------EGYS-ITNTITRTDVAGRDITTYLGYLLRKN---G--HLFNTS-------A 210 (380)
T ss_pred EEeCCCCceEEEEEE--------------CCEE-eecceeEecCchhHHHHHHHHHHHhc---C--CCCCcH-------H
Confidence 999999999987662 2321 22222234799999999998877532 0 111111 1
Q ss_pred HHHHHHHHhhhccCC-------------CceeEEEeecccCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHH
Q 004058 300 LKKQVKRTKEILSAN-------------TMAPISVESLYVDIDFRSSITRQKF---EELCEDLW-----ERSLVPLREVL 358 (776)
Q Consensus 300 L~~~~e~~K~~Ls~~-------------~~~~i~i~~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l 358 (776)
-+..++.+|+.++.- ....... .|.++. .+.|..+.| |-++.|-+ ..+.++|.+++
T Consensus 211 ~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y-~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI 287 (380)
T PTZ00466 211 EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY-ILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSI 287 (380)
T ss_pred HHHHHHHHHHhCeEecCChHHHHhhccccccceeE-ECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHH
Confidence 122344555544211 0000111 122333 345666655 22333321 14566777777
Q ss_pred HHCCCC--CCCccEEEEecCccCcHHHHHHHHHHhCCC-------ccCCCCCcchhHHhHHHHHHH
Q 004058 359 NYSGLK--MDEIYAVELIGGGTRVPKLQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 359 ~~a~~~--~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-------~i~~~~n~deava~GAa~~aa 415 (776)
.++..+ ..-...|+|+||+|.+|.+.++|+..+... ++..+.++..++=+||+++|.
T Consensus 288 ~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 288 TRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 765432 223468999999999999999998766321 233344556677778888875
No 45
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.87 E-value=7.3e-08 Score=103.67 Aligned_cols=174 Identities=19% Similarity=0.208 Sum_probs=97.7
Q ss_pred ceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHH
Q 004058 190 NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNME 269 (776)
Q Consensus 190 ~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D 269 (776)
..+.+++|+.||.+.+.... . +...++|+|+||+|+|+++++ ++.-.+-.+.+...+|-..+-
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~--~-~~~~~lVVDIGG~T~Dv~~v~--------------~~~~~~~~~~~~~~~Gvs~~~ 203 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL--D-EDESVLVVDIGGRTTDVAVVR--------------GGLPDISKCSGTPEIGVSDLY 203 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS----TTSEEEEEEE-SS-EEEEEEE--------------GGG--EEEEEEETTSSTHHHH
T ss_pred eeEEEEcccHHHHHHHHHhh--c-ccCcEEEEEcCCCeEEeeeec--------------CCccccchhccCCchhHHHHH
Confidence 34688999999998876552 2 236799999999999999983 111122344555688998888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHHHHHH
Q 004058 270 LRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCEDLWER 349 (776)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~ 349 (776)
..+.+.+... ... . +......+..... -+..++ ....+.+ .++++.+.++..+++
T Consensus 204 ~~I~~~l~~~-~~~------~--s~~~~~~ii~~~~-~~~~~~----------~~i~~~~-----~~~~v~~~i~~~~~~ 258 (318)
T PF06406_consen 204 DAIAQALRSA-GID------T--SELQIDDIIRNRK-DKGYLR----------QVINDED-----VIDDVSEVIEEAVEE 258 (318)
T ss_dssp HHHHHHTT---SBH------H--HHHHHHHHHHTTT--HHHHH----------HHSSSHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCC------C--cHHHHHHHHHhhh-ccceec----------ccccchh-----hHHHHHHHHHHHHHH
Confidence 7777766541 100 0 0000111110000 000000 0001111 134455555555555
Q ss_pred HHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhC--CCccCCCCCcchhHHhHHH
Q 004058 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG--RTELDRHLDADEAIVLGAS 411 (776)
Q Consensus 350 i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~--~~~i~~~~n~deava~GAa 411 (776)
+.+-|.+.+.+ ..+++.|+|+||++. .+.+.|++.|+ ...+...-||+.|-|+|-+
T Consensus 259 l~~~i~~~~~~----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 259 LINRILRELGD----FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHTT----S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHhh----hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 55555555532 347889999999975 67899999987 3466778899999999964
No 46
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.71 E-value=3.5e-07 Score=99.65 Aligned_cols=181 Identities=18% Similarity=0.231 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhCCceeeecchhHHHHHHhccc-cCCC--CCCcEEEEEEecCccceeeEEEEeeccccccCceeccCe
Q 004058 175 AERKGLMQAAELAGMNVLSLVNEHSGAALQYGID-KDFS--NESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQ 251 (776)
Q Consensus 175 ~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~-~~~~--~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~ 251 (776)
..-+...++++.|||++..+=-++.|.+-.|... ..++ ...+.++++|+|+.++.++++. ++.
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--------------~g~ 201 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--------------NGK 201 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--------------TTE
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--------------CCE
Confidence 4566778889999999866644555543333221 1122 2346799999999999999994 443
Q ss_pred EEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceE
Q 004058 252 FQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFR 331 (776)
Q Consensus 252 ~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~ 331 (776)
+.. ...-.+||.++++.|.+.+.-. ..+||..|..-+-. +
T Consensus 202 ~~f---~R~i~~G~~~l~~~i~~~~~i~---------------------~~~Ae~~k~~~~l~-----------~----- 241 (340)
T PF11104_consen 202 PIF---SRSIPIGGNDLTEAIARELGID---------------------FEEAEELKRSGGLP-----------E----- 241 (340)
T ss_dssp EEE---EEEES-SHHHHHHHHHHHTT-----------------------HHHHHHHHHHT--------------------
T ss_pred EEE---EEEEeeCHHHHHHHHHHhcCCC---------------------HHHHHHHHhcCCCC-----------c-----
Confidence 321 2223799999999998664211 24556666542100 0
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC--------ccCCCCC
Q 004058 332 SSITRQKFEELCEDLWERSLVPLREVLNY--SGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--------ELDRHLD 401 (776)
Q Consensus 332 ~~itr~efe~l~~~~~~~i~~~i~~~l~~--a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--------~i~~~~n 401 (776)
+...+.+.+.++++..-|++.++- .......|+.|+|+||++++|.+.+.|.+.++-. .+..+.+
T Consensus 242 -----~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~ 316 (340)
T PF11104_consen 242 -----EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPK 316 (340)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TT
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcc
Confidence 223344555566666666666552 2234558999999999999999999999999863 1111222
Q ss_pred ----------cchhHHhHHHHHH
Q 004058 402 ----------ADEAIVLGASLLA 414 (776)
Q Consensus 402 ----------~deava~GAa~~a 414 (776)
|..++|.|.|+++
T Consensus 317 ~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 317 INSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhhhhhhHHHHHHHHhhcC
Confidence 5668999999864
No 47
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.56 E-value=8.9e-07 Score=96.49 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=129.9
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCchh
Q 004058 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (776)
..||||+|||.+.+-+.+ -.+.|..+...+|. +.+.+.+.+|-..
T Consensus 7 ~SVGIDIGTsTTqlvfSr--------l~l~n~a~~~~vpr-~~I~dkev~yrS~-------------------------- 51 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSR--------LELENRASVFQVPR-IEIIDKEIIYRSP-------------------------- 51 (475)
T ss_pred EEEEEeccCceEEEEEEE--------EEEecccccccCce-EEEeeeEEEEecC--------------------------
Confidence 369999999999997761 23456556555665 3444555544221
Q ss_pred hHhhHhhcCCCceEeeCCCCceEEEe-CCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 004058 105 VKHLIDSLYLPFNVVEDSRGAVSFKI-DENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (776)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 183 (776)
+.|.. .+...+..+.+-..+-..++..--..-.....-.+||.+...-++-++.+..+
T Consensus 52 ---------------------i~fTPl~~~~~ID~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~ 110 (475)
T PRK10719 52 ---------------------IYFTPLLKQGEIDEAAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMAL 110 (475)
T ss_pred ---------------------ceecCCCCCccccHHHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHh
Confidence 11111 11233555555554444444311111111233468888876644444444332
Q ss_pred HH--------HhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEE
Q 004058 184 AE--------LAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVK 255 (776)
Q Consensus 184 a~--------~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~ 255 (776)
.. .||+++-.++. |-|++.+... . ++...++++|+||||++++++. +|.+ .
T Consensus 111 ~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e---Eke~gVa~IDIGgGTT~iaVf~--------------~G~l--~ 169 (475)
T PRK10719 111 SGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E---ERNTRVLNIDIGGGTANYALFD--------------AGKV--I 169 (475)
T ss_pred cccccceeeeccCccHHHhhh-HHHhhHHHhh-h---hccCceEEEEeCCCceEEEEEE--------------CCEE--E
Confidence 11 26777666666 8888776542 2 4457899999999999999994 4432 2
Q ss_pred EeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEee
Q 004058 256 DVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSIT 335 (776)
Q Consensus 256 ~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~it 335 (776)
.+ ..-.+||+.+..- - .+ .+..-....+++.+.+ -..+ ..+ -.++
T Consensus 170 ~T-~~l~vGG~~IT~D-~------------~~-~i~yis~~~~~l~~~~---~~~~-------------~~G----~~~~ 214 (475)
T PRK10719 170 DT-ACLNVGGRLIETD-S------------QG-RVTYISPPGQMILDEL---GLAI-------------TDG----RSLT 214 (475)
T ss_pred EE-EEEecccceEEEC-C------------CC-CEEEEChHHHHHHHHc---CCCc-------------ccc----ccCC
Confidence 22 2337888876421 0 00 0000011122222111 0000 111 1667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHC-CCC-CCCccEEEEecCccCc
Q 004058 336 RQKFEELCEDLWERSLVPLRE-------VLNYS-GLK-MDEIYAVELIGGGTRV 380 (776)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~-------~l~~a-~~~-~~~i~~V~LvGG~sri 380 (776)
.+++..+|+.+.+-+.+.+.. .|-.. .++ ...++.|.+.||-+..
T Consensus 215 ~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 215 GEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 788888887766666655541 11111 222 4678999999997765
No 48
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.56 E-value=2.6e-06 Score=94.62 Aligned_cols=192 Identities=14% Similarity=0.178 Sum_probs=111.0
Q ss_pred EEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcc-cceEEEE-eCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCchh
Q 004058 27 SSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRK-SPALVAF-HESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (776)
Q Consensus 27 vGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~-~PS~V~~-~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (776)
|-||.||.++++.+. .+. .|..+.++..+++. ..++..- ..+..++|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfa--g~~-~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~---------------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFA--GND-TPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL---------------- 68 (444)
T ss_pred EEEeCCCceEEeeec--CCC-CceeecccccccccccccccccccccccccCchhhhccCC-cc----------------
Confidence 899999999999998 333 67777777666654 3333321 23445566555321110 00
Q ss_pred hHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHH-HhhcCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 004058 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLV-DTHAKLAVKDFVISVPPYFGQAERKGLMQA 183 (776)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a-~~~~~~~~~~~VitVPa~f~~~qR~~l~~A 183 (776)
..+ ...+.+|. +.-=+....+++|+.... .......-..+++|-|..+....|..+.+.
T Consensus 69 -----------~~~--------~~p~~~g~-i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 69 -----------LEL--------RYPIENGI-ILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred -----------cee--------ecccccCc-cCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 000 00011221 111123445555554432 111111224699999999999999887765
Q ss_pred -HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCC
Q 004058 184 -AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAE 262 (776)
Q Consensus 184 -a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (776)
.+...++.+.+..++.+++.+ .... ..+-+|+|+|.+.|+++=+- +| +.+.....-..
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya--~g~~----~~~g~ViD~G~~~t~v~PV~--------------DG-~~l~~a~~ri~ 187 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYA--SGSS----DETGLVIDSGDSVTHVIPVV--------------DG-IVLPKAVKRID 187 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHh--cCCC----CCceEEEEcCCCceeeEeee--------------cc-ccccccceeee
Confidence 444455555566666555544 3331 14789999999999998772 22 12222223347
Q ss_pred CchHHHHHHHHHHHHHH
Q 004058 263 LGGQNMELRLVEYFADE 279 (776)
Q Consensus 263 lGG~~~D~~l~~~l~~~ 279 (776)
+||++++..|.+.+...
T Consensus 188 ~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 188 IGGRDITDYLKKLLREK 204 (444)
T ss_pred cCcHHHHHHHHHHHhhc
Confidence 99999999998888774
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.42 E-value=2.2e-05 Score=82.03 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccccCCCCCCcEE
Q 004058 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (776)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (776)
+++.++++|..+.... ....-.-++||-|++=+...|+.+.+. .+...++...|..+|+++|++-+ ..+-
T Consensus 86 D~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G--------rsta 156 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG--------RSTA 156 (426)
T ss_pred HHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC--------CCce
Confidence 5667777777642221 222234589999999889999888776 45556677788888888887642 2568
Q ss_pred EEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHH
Q 004058 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADE 279 (776)
Q Consensus 219 lV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 279 (776)
||+|+|++++.++-+- +|.+--.++.. ..+||+.++..+.+.|..+
T Consensus 157 lVvDiGa~~~svsPV~--------------DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 157 LVVDIGATHTSVSPVH--------------DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EEEEecCCCceeeeee--------------cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 9999999999988772 33322233333 3799999999999998866
No 50
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.40 E-value=8.8e-05 Score=76.66 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHhccc-cCCCCC--CcEEEEEEecCccceeeEEEEeeccccccCceeccCeEE
Q 004058 177 RKGLMQAAELAGMNVLSLVNEHSGAALQYGID-KDFSNE--SRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQ 253 (776)
Q Consensus 177 R~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~-~~~~~~--~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~ 253 (776)
-....+|++.|||....+=-|.-|.--+|... ..+..+ ..+++|+|+|+..+.++++. ++.
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~--------------~gk-- 214 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ--------------DGK-- 214 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEE--------------CCe--
Confidence 44567899999998765544555554344311 122211 23479999999999999994 222
Q ss_pred EEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEE
Q 004058 254 VKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSS 333 (776)
Q Consensus 254 v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~ 333 (776)
.-+..+-.+||+++.+.|.+.+ +.+. ..++.+|....-.. ++.
T Consensus 215 -~ly~r~~~~g~~Qlt~~i~r~~----------~L~~-----------~~a~~~k~~~~~P~-------------~y~-- 257 (354)
T COG4972 215 -ILYTREVPVGTDQLTQEIQRAY----------SLTE-----------EKAEEIKRGGTLPT-------------DYG-- 257 (354)
T ss_pred -eeeEeeccCcHHHHHHHHHHHh----------CCCh-----------hHhHHHHhCCCCCC-------------chh--
Confidence 1223345799999998876442 2322 34555555432211 110
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCC
Q 004058 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (776)
Q Consensus 334 itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (776)
-+-+......+.++|.+.|+-.+... ...+|++++|.||+.++-.+.+.+.+.++-
T Consensus 258 --~~vl~~f~~~l~~ei~Rslqfy~~~s--~~~~id~i~LaGggA~l~gL~~~i~qrl~~ 313 (354)
T COG4972 258 --SEVLRPFLGELTQEIRRSLQFYLSQS--EMVDIDQILLAGGGASLEGLAAAIQQRLSI 313 (354)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcc--ccceeeEEEEecCCcchhhHHHHHHHHhCC
Confidence 11122233444455555554444444 345899999999999999999999999875
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.22 E-value=0.0002 Score=84.64 Aligned_cols=274 Identities=17% Similarity=0.187 Sum_probs=157.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCC--------------CCCcEEEEcCCCCCHHHHHHHHHHHHHh--------CCc--
Q 004058 135 NFSVEELLAMVLSYAVNLVDTHAKL--------------AVKDFVISVPPYFGQAERKGLMQAAELA--------GMN-- 190 (776)
Q Consensus 135 ~~~~eel~a~~L~~l~~~a~~~~~~--------------~~~~~VitVPa~f~~~qR~~l~~Aa~~A--------Gl~-- 190 (776)
.||-..++.++|..+.-+|..+.+. ....+++|||+.-...+|+.+++.++.| |..
T Consensus 416 ~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~ 495 (1002)
T PF07520_consen 416 HYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPW 495 (1002)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4677778888888887777655432 2567999999999999999888877754 431
Q ss_pred -------------------eeeecchhHHHHHHhccc------------------c-C-C------CCCCcEEEEEEecC
Q 004058 191 -------------------VLSLVNEHSGAALQYGID------------------K-D-F------SNESRHVVFYDMGA 225 (776)
Q Consensus 191 -------------------~~~li~Ep~AAAl~y~~~------------------~-~-~------~~~~~~vlV~D~Gg 225 (776)
+..=-+|.||.=+-|... + + . ....-+|.-+|+||
T Consensus 496 ~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGG 575 (1002)
T PF07520_consen 496 DDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGG 575 (1002)
T ss_pred CCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCC
Confidence 111234555543333211 1 0 0 11234789999999
Q ss_pred ccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHH-HHHHHHHhhhcC--------------CCCCC
Q 004058 226 TTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLV-EYFADEFNKQVG--------------NGVDV 290 (776)
Q Consensus 226 gT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~-~~l~~~~~~~~~--------------~~~d~ 290 (776)
||||+.|-.|....+...-..+.+. .+-..|- .+.|+||=..+. .++...+.+... .+.+-
T Consensus 576 GTTDL~It~Y~ld~G~g~nv~I~P~---q~FReGF-kvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg 651 (1002)
T PF07520_consen 576 GTTDLMITQYRLDDGQGSNVKITPE---QLFREGF-KVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDG 651 (1002)
T ss_pred CcceeeEEEEEeccCCcceeEECcc---hhhhhhc-ccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcc
Confidence 9999999998754321100011111 1112222 678888776554 455444433210 11110
Q ss_pred CCC-HH-------------HHHHHHHHHHHHhhhccCCCceeEEEeec---------------------------ccCcc
Q 004058 291 RKS-PK-------------AMAKLKKQVKRTKEILSANTMAPISVESL---------------------------YVDID 329 (776)
Q Consensus 291 ~~~-~~-------------~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l---------------------------~~~~d 329 (776)
... .+ ...+++.++|..-..- ........+..+ ++=.+
T Consensus 652 ~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~-~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 652 QSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLD-PSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 000 00 1123344555422110 000111111111 01124
Q ss_pred eEEEeeHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC--c---------
Q 004058 330 FRSSITRQKFEELCE---DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--E--------- 395 (776)
Q Consensus 330 ~~~~itr~efe~l~~---~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--~--------- 395 (776)
+.+.|+..++...+- -.+......+-+++..- +-|-++|+|--||+|.||..+++..+.. +
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~t 805 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRT 805 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeee
Confidence 456899999988774 56666767777777654 4467999999999999999999887542 1
Q ss_pred --------cCCCCCcchhHHhHHHHHHHHhc
Q 004058 396 --------LDRHLDADEAIVLGASLLAANLS 418 (776)
Q Consensus 396 --------i~~~~n~deava~GAa~~aa~ls 418 (776)
-.+--||-..||.||.+++....
T Consensus 806 g~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 806 GNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 12335899999999998876544
No 52
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.01 E-value=0.0011 Score=69.01 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=40.5
Q ss_pred EEEEecCccCcHHHHHHHHHHhCCCccC-CCCCcchhHHhHHHHHHHH
Q 004058 370 AVELIGGGTRVPKLQAKLQEYLGRTELD-RHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 370 ~V~LvGG~sriP~v~~~l~~~f~~~~i~-~~~n~deava~GAa~~aa~ 416 (776)
.|+|+||.++.|.+.+.+++.++. ++. .+.+|+.+.|+|||++|..
T Consensus 242 ~v~~~GGva~N~~l~~al~~~Lg~-~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERILGI-KAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CEEEECcccccHHHHHHHHHHhCC-CceeCCCCccHHHHHHHHHHHHH
Confidence 489999999999999999999986 444 4678999999999999864
No 53
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.96 E-value=0.00015 Score=75.19 Aligned_cols=169 Identities=15% Similarity=0.146 Sum_probs=97.9
Q ss_pred eecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHH
Q 004058 193 SLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRL 272 (776)
Q Consensus 193 ~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l 272 (776)
..++|.+|-+..-..-. + ..=.|+|+||..+-+..++ ++.+.-.........|+..|.+.+
T Consensus 73 ~~~~ei~~~~~g~~~~~--~---~~~~vidiGgqd~k~i~~~--------------~g~~~~~~~n~~ca~Gtg~f~e~~ 133 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA--P---EARGVIDIGGQDSKVIKID--------------DGKVDDFTMNDKCAAGTGRFLEVT 133 (248)
T ss_pred CceEEhhHHHHHHHHHC--C---CCCEEEEecCCeeEEEEEC--------------CCcEeeeeecCcccccccHHHHHH
Confidence 36778887655432222 1 1225999999888887773 343322233444466777777776
Q ss_pred HHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhh----ccCCCceeEEEee-cccCcceEEEeeHHHHHHHHHHHH
Q 004058 273 VEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEI----LSANTMAPISVES-LYVDIDFRSSITRQKFEELCEDLW 347 (776)
Q Consensus 273 ~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~----Ls~~~~~~i~i~~-l~~~~d~~~~itr~efe~l~~~~~ 347 (776)
++.+- .+ .++++.++.. ..-+..+.+..+. +..... ...++ ++++..++
T Consensus 134 a~~l~----------~~-----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~--~g~~~---~di~~~~~ 187 (248)
T TIGR00241 134 ARRLG----------VS-----------VEELGSLAEKADRKAKISSMCTVFAESELISLLA--AGVKK---EDILAGVY 187 (248)
T ss_pred HHHcC----------CC-----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHH--CCCCH---HHHHHHHH
Confidence 65542 22 1222222222 1111222222221 111000 01233 34555666
Q ss_pred HHHHHHHHHHHHHCCCCCCCcc-EEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 348 ERSLVPLREVLNYSGLKMDEIY-AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 348 ~~i~~~i~~~l~~a~~~~~~i~-~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
+.+...+...+...+ ++ .|+|+||.++.|++.+.+.+.++. ++..+.++..+.|+|||+
T Consensus 188 ~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~-~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 188 ESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGM-KVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCC-cEEcCCCccHHHHHHHHh
Confidence 666655555554432 44 699999999999999999999975 677788898999999996
No 54
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.87 E-value=0.0047 Score=63.55 Aligned_cols=45 Identities=27% Similarity=0.264 Sum_probs=38.5
Q ss_pred EEEEecCccCcHHHHHHHHHHhCCCc----cCCCCCcchhHHhHHHHHH
Q 004058 370 AVELIGGGTRVPKLQAKLQEYLGRTE----LDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 370 ~V~LvGG~sriP~v~~~l~~~f~~~~----i~~~~n~deava~GAa~~a 414 (776)
.|+|.||.++.+.+.+.|++.++... +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 49999999999999999999996433 4556789999999999874
No 55
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.83 E-value=0.00053 Score=69.20 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=100.3
Q ss_pred HHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCc
Q 004058 185 ELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG 264 (776)
Q Consensus 185 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lG 264 (776)
+..|.++.--=-|+.+|.+...... ..+..+.|+|+||||||++++. ..+.+..+.-.| .
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP---Gt~~PlaIlDmG~GSTDAsii~-------------~~g~v~~iHlAG----A 165 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP---GTDKPLAILDMGGGSTDASIIN-------------RDGEVTAIHLAG----A 165 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST---T--SSEEEEEE-SSEEEEEEE--------------TTS-EEEEEEE-----S
T ss_pred HHHCCceEEccccHHHHHhcccCCC---CCCCCeEEEecCCCcccHHHhC-------------CCCcEEEEEecC----C
Confidence 4568888777789999988765543 3345699999999999999993 145555444433 3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCCCceeEEE----------ee-----------
Q 004058 265 GQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSANTMAPISV----------ES----------- 323 (776)
Q Consensus 265 G~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i----------~~----------- 323 (776)
|+-++..|...| +++- +.-||.+|+.--..-+.-+++ +.
T Consensus 166 G~mVTmlI~sEL----------Gl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvv 225 (332)
T PF08841_consen 166 GNMVTMLINSEL----------GLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVV 225 (332)
T ss_dssp HHHHHHHHHHHC----------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEE
T ss_pred chhhHHHHHHhh----------CCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEE
Confidence 566655543221 2211 345667765421110100000 00
Q ss_pred -cccC--cceEEEeeHHHHHHHHHHHHHHH-HHHHHHHHHHC--CCCCCCccEEEEecCccCcHHHHHHHHHHhCCC---
Q 004058 324 -LYVD--IDFRSSITRQKFEELCEDLWERS-LVPLREVLNYS--GLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--- 394 (776)
Q Consensus 324 -l~~~--~d~~~~itr~efe~l~~~~~~~i-~~~i~~~l~~a--~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--- 394 (776)
+.++ .++...++-+++..+-+..=+++ ..-.-++|+.. .-+..+|+.|+|||||+.=.-|-+++.+.+..-
T Consensus 226 i~~~~~lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iV 305 (332)
T PF08841_consen 226 ILKEDGLVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIV 305 (332)
T ss_dssp EECTTEEEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-E
T ss_pred EecCCceeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcce
Confidence 0011 11111233333333222211111 11122334432 224568999999999999888888888877432
Q ss_pred ----ccCCCCCcchhHHhHHHHHH
Q 004058 395 ----ELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 395 ----~i~~~~n~deava~GAa~~a 414 (776)
.+.-..-|.-|||.|.++.-
T Consensus 306 aGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 306 AGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp EEE--GGGTSTTSTHHHHHHHHHH
T ss_pred eeccccccccCchHHHHHHHHHhh
Confidence 45555678889999998753
No 56
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.72 E-value=0.0031 Score=68.42 Aligned_cols=45 Identities=31% Similarity=0.356 Sum_probs=41.5
Q ss_pred EEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHH
Q 004058 370 AVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 370 ~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa 415 (776)
.|+++||.++.+.+.+.+++.++. ++..+.+|+.+.|.|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~Lg~-~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLLGI-EVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHhCC-cEEECCcccHHHHHHHHHHhc
Confidence 499999999999999999999986 677788999999999999985
No 57
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.71 E-value=0.00041 Score=74.61 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEE
Q 004058 143 AMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYD 222 (776)
Q Consensus 143 a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D 222 (776)
..+++|+...-.. .......+++|-|+.+...-|+.+-+..-. -|++-.+.-.. .|.+ |+..+ .+=+|+|
T Consensus 82 e~iw~~if~~~L~-~~Pee~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~-qavl-ya~g~------ttG~VvD 151 (372)
T KOG0676|consen 82 EKIWHHLFYSELL-VAPEEHPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAI-QAVL-YASGR------TTGLVVD 151 (372)
T ss_pred HHHHHHHHHHhhc-cCcccCceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHH-HHHH-HHcCC------eeEEEEE
Confidence 5566666521111 111234699999999999999988776322 34444443322 3333 65544 4569999
Q ss_pred ecCccc-eeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHH
Q 004058 223 MGATTT-YAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFAD 278 (776)
Q Consensus 223 ~GggT~-dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 278 (776)
+|.|-+ -+-+++ | +.+...-....+||+++..-|...|.+
T Consensus 152 ~G~gvt~~vPI~e---------------G-~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 152 SGDGVTHVVPIYE---------------G-YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred cCCCceeeeeccc---------------c-cccchhhheecccchhhHHHHHHHHHh
Confidence 999966 444542 2 223333344579999999866666655
No 58
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.56 E-value=0.0017 Score=71.41 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=92.9
Q ss_pred cEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCchh
Q 004058 25 AVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPFKQ 104 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~~~ 104 (776)
..||||+|||.+.+-+. .+ .+.|-.|...+|. +.+.+.+.+|=...
T Consensus 4 ~SVGIDIGTSTTQlvfS-------rl-~l~n~a~~~~vPr-i~I~dkeViYrS~I------------------------- 49 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFS-------RL-TLENRASGFSVPR-IEIVDKEVIYRSPI------------------------- 49 (473)
T ss_pred EEEEEeecCCceeEEEE-------Ee-EEEeccCCCccce-EEEeccEEEecCCc-------------------------
Confidence 36999999999998776 12 3345555556665 44555555442210
Q ss_pred hHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 004058 105 VKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA 184 (776)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa 184 (776)
.+.|+ .+...+..+.+-..+.+.+++.--..-...-.-++||==+--.++.|..+..-+
T Consensus 50 -------~fTPl--------------~~~~~ID~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls 108 (473)
T PF06277_consen 50 -------YFTPL--------------LSQTEIDAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALS 108 (473)
T ss_pred -------cccCC--------------CCCCccCHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHH
Confidence 01111 112345666665555555443211100011123566666666677788887777
Q ss_pred HHhCCceeee---cchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCC
Q 004058 185 ELAGMNVLSL---VNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDA 261 (776)
Q Consensus 185 ~~AGl~~~~l---i~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 261 (776)
..||==|+.- =.|+.=|+-..+-..-..+....|+=+|+||||+.+++++ .| +++++..-
T Consensus 109 ~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~--------------~G--~v~~T~cl- 171 (473)
T PF06277_consen 109 GFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFD--------------NG--EVIDTACL- 171 (473)
T ss_pred HhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEE--------------CC--EEEEEEEE-
Confidence 7776322211 1133323222111111113357899999999999999995 33 24555444
Q ss_pred CCchHHH
Q 004058 262 ELGGQNM 268 (776)
Q Consensus 262 ~lGG~~~ 268 (776)
++||+.|
T Consensus 172 ~IGGRLi 178 (473)
T PF06277_consen 172 DIGGRLI 178 (473)
T ss_pred eeccEEE
Confidence 7899864
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.52 E-value=0.016 Score=61.46 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHH
Q 004058 340 EELCEDLWERSLVPLRE-VLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 340 e~l~~~~~~~i~~~i~~-~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ 416 (776)
|+++..+...+..-+-. +++...+. +. |+|+||.+....+.+++.+.++. ++..+.+|...-|.|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~~--iv~~GGva~n~av~~ale~~lg~-~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--EP--IVLQGGVALNKAVVRALEDLLGR-KVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--CC--EEEECcchhhHHHHHHHHHHhCC-eeecCCccchhhHHHHHHHHhh
Confidence 44555555544433333 55544332 22 99999999999999999999995 7889999999999999999864
No 60
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.14 E-value=0.024 Score=63.58 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=55.0
Q ss_pred eEEEeeHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC------------
Q 004058 330 FRSSITRQKFEELCEDL---WERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT------------ 394 (776)
Q Consensus 330 ~~~~itr~efe~l~~~~---~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~------------ 394 (776)
+-+.|.-.++++.+-.- +....+.+-+++.. -+-|-++|+|--||.|.||..++...+..
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34467777776654332 33333444444432 34567999999999999999998765431
Q ss_pred -------ccCCCCCcchhHHhHHHHHHHHhc
Q 004058 395 -------ELDRHLDADEAIVLGASLLAANLS 418 (776)
Q Consensus 395 -------~i~~~~n~deava~GAa~~aa~ls 418 (776)
+..+--||...+|.||.+++..+.
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 123335899999999998876644
No 61
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=96.89 E-value=0.01 Score=64.73 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=82.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCC-----cEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccc
Q 004058 135 NFSVEELLAMVLSYAVNLVDTHAKLAVK-----DFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGID 208 (776)
Q Consensus 135 ~~~~eel~a~~L~~l~~~a~~~~~~~~~-----~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~ 208 (776)
.++..++++.+-+-+.-...+.++.+.+ .+|+-||-.|.....+.+.+. ....||.-..++.|+.||.+..|+.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 3556666655433332223444554433 589999999998886666555 5567999999999999999766553
Q ss_pred cCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHH
Q 004058 209 KDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFAD 278 (776)
Q Consensus 209 ~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 278 (776)
.--|||+|+-+|.++.|+ .| +....+.--...||.||++.|+-++.+
T Consensus 276 --------s~CVVdiGAQkTsIaCVE--------------dG-vs~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 --------SACVVDIGAQKTSIACVE--------------DG-VSLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred --------ceeEEEccCcceeEEEee--------------cC-ccccCceEEeccCCchHHHHHHHHHHh
Confidence 368999999999999995 11 111111222368999999999876654
No 62
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.74 E-value=0.034 Score=59.90 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=40.5
Q ss_pred cEEEEecCccCcHHHHHHHHHHhC----CCccCCCCCcchhHHhHHHHHH
Q 004058 369 YAVELIGGGTRVPKLQAKLQEYLG----RTELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 369 ~~V~LvGG~sriP~v~~~l~~~f~----~~~i~~~~n~deava~GAa~~a 414 (776)
..|+|+||.++.+.+.+.|++.++ ..++..+.+|+.+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 359999999999999999999995 3357778899999999999875
No 63
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.33 E-value=0.0068 Score=60.48 Aligned_cols=75 Identities=32% Similarity=0.426 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHH
Q 004058 340 EELCEDLWERSLVPLREVLNYSGL-KMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 340 e~l~~~~~~~i~~~i~~~l~~a~~-~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ 416 (776)
.++++-+++.+.-.++..++...- ....++.|+++||.++.|.+.+.+.+.|+. ++... +..|+.+.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~-~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGR-PVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTS-EEEEE-SSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCC-ceEeC-CCCchHHHHHHHHHHh
Confidence 344444455544444444443311 123588999999999999999999999995 55433 4489999999999874
No 64
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.32 E-value=0.12 Score=51.89 Aligned_cols=193 Identities=18% Similarity=0.214 Sum_probs=111.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccc
Q 004058 162 KDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNA 240 (776)
Q Consensus 162 ~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 240 (776)
..+.+|-|+-=...-|+.|.+. .+.-||.-+.+.- .|+.--|+... -.=+|+|-|-|-|.+.-+-
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvai--QAVLtLYAQGL------~tGvVvDSGDGVTHi~PVy------ 167 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAI--QAVLTLYAQGL------LTGVVVDSGDGVTHIVPVY------ 167 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehH--HHHHHHHHhcc------cceEEEecCCCeeEEeeee------
Confidence 4688999998888888888776 5667887654432 23333354432 2348999999988776551
Q ss_pred cccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHhhhccCC------
Q 004058 241 KVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKSPKAMAKLKKQVKRTKEILSAN------ 314 (776)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~~~~~kL~~~~e~~K~~Ls~~------ 314 (776)
.+ +..-.-...-.+.|+++++-|.+++..+= +...-..+ .+.....|+.|+--
T Consensus 168 --------e~-~~l~HLtrRldvAGRdiTryLi~LLl~rG-----YafN~tAD-------FETVR~iKEKLCYisYd~e~ 226 (389)
T KOG0677|consen 168 --------EG-FVLPHLTRRLDVAGRDITRYLIKLLLRRG-----YAFNHTAD-------FETVREIKEKLCYISYDLEL 226 (389)
T ss_pred --------cc-eehhhhhhhccccchhHHHHHHHHHHhhc-----cccccccc-------hHHHHHHHhhheeEeechhh
Confidence 11 11111122336889999999988887551 22221111 23334455555321
Q ss_pred -----CceeEEEee--cccCcceEEEeeHHHHH---HHHHHHHH-----HHHHHHHHHHHHCCCCC--CCccEEEEecCc
Q 004058 315 -----TMAPISVES--LYVDIDFRSSITRQKFE---ELCEDLWE-----RSLVPLREVLNYSGLKM--DEIYAVELIGGG 377 (776)
Q Consensus 315 -----~~~~i~i~~--l~~~~d~~~~itr~efe---~l~~~~~~-----~i~~~i~~~l~~a~~~~--~~i~~V~LvGG~ 377 (776)
-++++-+++ |.++. .+++--+.|| .+++|.+- .+.+++-.+++.+.++. .--.+|+|.||+
T Consensus 227 e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGs 304 (389)
T KOG0677|consen 227 EQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGS 304 (389)
T ss_pred hhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCc
Confidence 122333332 33443 2355556664 35555321 34556666666665432 223689999999
Q ss_pred cCcHHHHHHHHHHh
Q 004058 378 TRVPKLQAKLQEYL 391 (776)
Q Consensus 378 sriP~v~~~l~~~f 391 (776)
+.-|.+-..|++.+
T Consensus 305 tMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 305 TMYPGLPSRLEKEL 318 (389)
T ss_pred ccCCCCcHHHHHHH
Confidence 99999888887654
No 65
>PRK13317 pantothenate kinase; Provisional
Probab=96.18 E-value=0.11 Score=54.70 Aligned_cols=49 Identities=27% Similarity=0.221 Sum_probs=41.8
Q ss_pred CccEEEEec-CccCcHHHHHHHHHHhC--CCccCCCCCcchhHHhHHHHHHH
Q 004058 367 EIYAVELIG-GGTRVPKLQAKLQEYLG--RTELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 367 ~i~~V~LvG-G~sriP~v~~~l~~~f~--~~~i~~~~n~deava~GAa~~aa 415 (776)
.++.|+++| |.++.|.+++.+.+.+. ..++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456799999 79999999999999873 33667788999999999999875
No 66
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.12 E-value=0.28 Score=54.84 Aligned_cols=225 Identities=16% Similarity=0.087 Sum_probs=114.2
Q ss_pred HHHHHHHHhCCcee-----eecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEE
Q 004058 179 GLMQAAELAGMNVL-----SLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQ 253 (776)
Q Consensus 179 ~l~~Aa~~AGl~~~-----~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~ 253 (776)
...++|+..||..- .+|+ .-|.++.-+-. . .+-|++=+|-+|+++.+-+-...-.+ +-+....
T Consensus 233 Lt~e~A~~lGL~~~~~Vs~g~ID-Ahag~~Gv~~~-----~-~~~l~~I~GTStC~m~~s~~~~~v~G-----vwGpy~~ 300 (544)
T COG1069 233 LTPEAAQELGLPEGTVVSAGIID-AHAGAVGVGGA-----Q-PGSLAMIAGTSTCHMLLSEKPRFVPG-----VWGPYDG 300 (544)
T ss_pred cCHHHHHHhCCCCCcEEecccee-ccccccccccC-----C-CCeEEEEeccceEEEEecCCceecCc-----ccccccc
Confidence 45678888888531 2222 22222222111 1 22344447777777777632100000 0011111
Q ss_pred EEEeecCCCCchHHHHHHHHHHHHHHHhhhcC----CCCCCC-CCHHHHHHHHHHHHHHhhhccCCCceeEEEeecccC-
Q 004058 254 VKDVRWDAELGGQNMELRLVEYFADEFNKQVG----NGVDVR-KSPKAMAKLKKQVKRTKEILSANTMAPISVESLYVD- 327 (776)
Q Consensus 254 v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~----~~~d~~-~~~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~- 327 (776)
.+.-+.-..=||..-.-.|.+||.+....... +..+.. .......++..-+++.+...+....- +.++....+
T Consensus 301 ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNR 379 (544)
T COG1069 301 AVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGL-HVLDWFNGNR 379 (544)
T ss_pred ccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCc-EecccccCCc
Confidence 22223333557777777788888766321100 000000 00123444555556666555322211 112211111
Q ss_pred -----c-------ceEEEeeHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhC
Q 004058 328 -----I-------DFRSSITRQKFEELCEDLWERS---LVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (776)
Q Consensus 328 -----~-------d~~~~itr~efe~l~~~~~~~i---~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (776)
. ++++.=+.+.+-.+....+.-+ .+.|-+++++.|+ .|+.|+..||-.+.|.+.+.+....|
T Consensus 380 sP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg 456 (544)
T COG1069 380 SPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTG 456 (544)
T ss_pred CCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcC
Confidence 1 1122233443334444444333 2445556666665 68899999999999999999999998
Q ss_pred CCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 393 RTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 393 ~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
. ++. -...++++++|+|+.|+.-.+.+
T Consensus 457 ~-~v~-i~~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 457 R-PVV-IPASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred C-eEE-eecccchhhhHHHHHHHHHhccC
Confidence 6 333 33678899999999998765443
No 67
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.82 E-value=0.39 Score=53.09 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=49.0
Q ss_pred ceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHH-HHhCCCccCCCCCcchhHH
Q 004058 329 DFRSSITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQ-EYLGRTELDRHLDADEAIV 407 (776)
Q Consensus 329 d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~-~~f~~~~i~~~~n~deava 407 (776)
.-.+.||..+++++... -.-+..-++-.|++++++.++|+.|+|.||++.-=-+++.+. -.++.....+-.-.-.++-
T Consensus 290 ~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al 368 (412)
T PF14574_consen 290 GDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAAL 368 (412)
T ss_dssp SS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHH
T ss_pred CCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHH
Confidence 34569999999876432 233556677888999999999999999999998877777776 2333221111111122556
Q ss_pred hHHHHH
Q 004058 408 LGASLL 413 (776)
Q Consensus 408 ~GAa~~ 413 (776)
.||.+.
T Consensus 369 ~GA~~~ 374 (412)
T PF14574_consen 369 AGARMA 374 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 68
>PRK15027 xylulokinase; Provisional
Probab=95.42 E-value=0.04 Score=63.18 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=56.6
Q ss_pred eeHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 334 ITRQKFEELC-EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 334 itr~efe~l~-~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
-+|.+|-..+ +.+.-.+...+ +.+++.+. .++.|+++||+++++...+++.+.+|. ++....+.+++.++|||+
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~-pv~~~~~~~~~~a~GaA~ 430 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQ-QLDYRTGGDVGPALGAAR 430 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCC-eEEeecCCCcchHHHHHH
Confidence 3566654433 22332333333 33444443 478899999999999999999999996 564555667789999999
Q ss_pred HHHHhcCCc
Q 004058 413 LAANLSDGI 421 (776)
Q Consensus 413 ~aa~ls~~~ 421 (776)
.|+.-.+.+
T Consensus 431 lA~~~~G~~ 439 (484)
T PRK15027 431 LAQIAANPE 439 (484)
T ss_pred HHHHhcCCc
Confidence 998755443
No 69
>PLN02669 xylulokinase
Probab=95.26 E-value=0.057 Score=62.82 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHH
Q 004058 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 343 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ 416 (776)
++.+++.+.=.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||. ++.. ++..++.++|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~-pV~~-~~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGC-DVYT-VQRPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCC-CeEe-cCCCCchHHHHHHHHHH
Confidence 4444444444444444443332 3578999999999999999999999996 5543 34457899999999976
No 70
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.12 E-value=0.066 Score=62.29 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=61.4
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHH
Q 004058 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (776)
Q Consensus 334 itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~ 413 (776)
=+|..+..+++.+++.+.-.++..++...-....++.|.++||+++.+...+.+.+.+|. ++... +..|+.++|||+.
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~~~e~~alGaA~l 487 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDM-PVLIP-YVNEAVLHGAAML 487 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCC-eeEec-ChhHHHHHHHHHH
Confidence 356667777777777776555555544321122578899999999999999999999986 56444 4456889999999
Q ss_pred HHHhcC
Q 004058 414 AANLSD 419 (776)
Q Consensus 414 aa~ls~ 419 (776)
|+.-.+
T Consensus 488 A~~~~G 493 (541)
T TIGR01315 488 GAKAAG 493 (541)
T ss_pred HHHhcC
Confidence 986544
No 71
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.64 E-value=0.11 Score=55.29 Aligned_cols=69 Identities=23% Similarity=0.222 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHH
Q 004058 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (776)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~ 413 (776)
+++-..+++.+.|++.....+..+.+. .++.+||.+ |++-..|.+.+|-..+..+..+.-+-|.||++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 334455555555555544445554432 245556665 778888888888777766667788899999853
No 72
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.26 E-value=0.16 Score=46.26 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=23.3
Q ss_pred EEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCc--hHHHH
Q 004058 218 VVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELG--GQNME 269 (776)
Q Consensus 218 vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lG--G~~~D 269 (776)
++++|+|++++.+.+++.. ..+.+.+++.+..+.-| |..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~-----------~~~~~~vl~~g~~~s~gi~~g~It 43 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-----------SDGYIRVLGVGEVPSKGIKGGHIT 43 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-----------EEEEEEEES----------HHHHH
T ss_pred CEEEEcCCCcEEEEEEEeC-----------CCCcEEEEEEecccccccCCCEEE
Confidence 6899999999999999642 24456666654333322 55555
No 73
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=94.15 E-value=0.15 Score=58.50 Aligned_cols=52 Identities=33% Similarity=0.542 Sum_probs=43.6
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCC
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~ 420 (776)
.++.|.++||+++.+.+.+.+.+.||. ++.. ....|+.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~-pv~~-~~~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGT-PVDV-PEGEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCC-ceee-cCCCcchHHHHHHHHHHhcCC
Confidence 578899999999999999999999986 5543 346679999999999875543
No 74
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.13 E-value=0.14 Score=59.09 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=43.1
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCC
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~ 420 (776)
.++.|.++||+++.|...+++.+.||. ++. ..+..|+.++|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~-~~~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGV-PVE-RPVVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCC-eeE-ecCcccchHHHHHHHHhhhcCc
Confidence 477899999999999999999999996 553 4455679999999999865543
No 75
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=93.99 E-value=0.13 Score=59.19 Aligned_cols=52 Identities=27% Similarity=0.213 Sum_probs=43.1
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCC
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~ 420 (776)
.++.|.++||+++.+...+++.+.||. ++.. .+..|+.++|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~-pv~~-~~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGV-PVVR-PKVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCC-eeEe-cCCCcchHHHHHHHHHhhcCc
Confidence 478899999999999999999999996 5543 455678999999999865443
No 76
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=93.94 E-value=0.61 Score=52.53 Aligned_cols=73 Identities=23% Similarity=0.289 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCcc
Q 004058 345 DLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGIK 422 (776)
Q Consensus 345 ~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~~ 422 (776)
.+.-++...|+..-.+.+ ..|+.+.+.||.|+.|.+.+.+.+.+|. ++..+.+.|. ++.|||+.|+..++.+.
T Consensus 395 ai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~-pv~~p~~~e~-~~~GaA~l~~~a~~~~~ 467 (516)
T KOG2517|consen 395 AIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGL-PVVRPQDVEA-VALGAAMLAGAASGKWS 467 (516)
T ss_pred HHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCC-ccccccchhH-HHHHHHHHHHhhcCCcc
Confidence 333344444443333333 4678899999999999999999999995 7777878776 99999999998887543
No 77
>PRK04123 ribulokinase; Provisional
Probab=93.92 E-value=0.14 Score=59.78 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=42.3
Q ss_pred CccEEEEecCc-cCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcC
Q 004058 367 EIYAVELIGGG-TRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (776)
Q Consensus 367 ~i~~V~LvGG~-sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~ 419 (776)
.++.|.++||+ ++.+.+.+.+.+.||. ++. .....|+.++|||+.|+.-.+
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~-pV~-~~~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNR-PIQ-VVASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCC-ceE-ecCccccchHHHHHHHHHHhc
Confidence 47789999999 9999999999999996 553 335567999999999986544
No 78
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=93.89 E-value=0.16 Score=58.56 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=43.1
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
.++.|.++||+++.+...+.+.+.||. ++. .....|+.++|||+.|+.-.+.+
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~-pV~-~~~~~e~~alGaAl~aa~a~G~~ 458 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGK-DIV-VPEMAETTALGAALLAGLAVGVW 458 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCC-ceE-ecCcccchHHHHHHHHHhhcCcc
Confidence 378899999999999999999999996 553 33456689999999998655433
No 79
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=93.81 E-value=0.17 Score=58.85 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=42.9
Q ss_pred CccEEEEecCc-cCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCC
Q 004058 367 EIYAVELIGGG-TRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (776)
Q Consensus 367 ~i~~V~LvGG~-sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~ 420 (776)
.++.|.++||+ ++.+.+.+.+.+.||. ++....+ .|+.++|||+.|+.-.+.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g~-pV~~~~~-~e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTNR-PLQIVAS-DQAPALGAAIFAAVAAGV 487 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhCC-eeEeccC-CcchhHHHHHHHHHHcCC
Confidence 57889999999 9999999999999995 5644444 568899999999875543
No 80
>PRK10331 L-fuculokinase; Provisional
Probab=93.62 E-value=0.18 Score=57.71 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=42.8
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCC
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~ 420 (776)
.++.|.++||+++.|...+.+.+.||. ++... ...|+.++|||+.|+.-.+.
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~-pV~~~-~~~e~~a~GaA~la~~~~G~ 440 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDI-PIKVL-DDAETTVAGAAMFGWYGVGE 440 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCC-eeEec-CcccchHHHHHHHHHHhcCC
Confidence 578899999999999999999999996 55333 45578999999999865443
No 81
>PLN02295 glycerol kinase
Probab=93.48 E-value=0.2 Score=57.86 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=43.6
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
.++.|.++||+++.|...+.+.+.||. ++. ..+..|+.++|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~-pV~-~~~~~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGS-PVV-RPADIETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCC-ceE-ecCccccHHHHHHHHHHhhcCcC
Confidence 578899999999999999999999996 553 44556799999999988655433
No 82
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=93.41 E-value=0.19 Score=57.25 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=42.1
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcC
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~ 419 (776)
.++.|.++||+++.|...+.+.+.||. ++... +..|+.++|||+.|+.-.+
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~-pV~~~-~~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDI-PVKVV-DDAETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCC-eeEec-cCCcchHHHHHHHHHHhcC
Confidence 467899999999999999999999995 55433 4457889999999986544
No 83
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.36 E-value=0.27 Score=53.41 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=46.0
Q ss_pred HCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHH
Q 004058 360 YSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 360 ~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ 416 (776)
..+........|+.+||.||...|-+.|.+.||. ++. ..+..++++.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~a-pVy-~~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGA-PVY-TIEGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCC-CeE-eecCCchhhHHHHHHHHH
Confidence 3466666788999999999999999999999997 443 337888999999999864
No 84
>PRK10854 exopolyphosphatase; Provisional
Probab=93.34 E-value=1.6 Score=50.36 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHh-ccccCCCCCCcEEEEEEecCccceeeEEE
Q 004058 177 RKGLMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (776)
Q Consensus 177 R~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 234 (776)
...+.++-+..|+++ .+|+..+=|.+.| +....++. .+..+|+|+|||+|.+++++
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEec
Confidence 333444555569987 6777777666665 34333332 35689999999999999983
No 85
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=93.31 E-value=0.22 Score=56.71 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=42.6
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
.++.|.++||+++.++..+.+.+.+|. ++.. .. .|+.++|||+.|+.-.+.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~-~~-~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGI-RVIA-GP-VEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCC-ceEc-CC-chHHHHHHHHHHHHhcCCc
Confidence 477899999999999999999999996 5543 23 6799999999998755433
No 86
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.30 E-value=0.45 Score=49.60 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=36.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCcee--------eecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEE
Q 004058 164 FVISVPPYFGQAERKGLMQAAELAGMNVL--------SLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (776)
Q Consensus 164 ~VitVPa~f~~~qR~~l~~Aa~~AGl~~~--------~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 234 (776)
++||=-.--....|.++..-...||==++ .+|--.-|-|..|.- +....++=+|+||||+..+++.
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Se-----qr~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSE-----QRLTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhh-----hhceEEEEEeccCCccceeeec
Confidence 55565555555666666554455542222 122222222322211 2346789999999999999993
No 87
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=92.91 E-value=0.25 Score=56.96 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=43.3
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
.++.|.++||+++.+...+.+.+.||. ++... +..|+.++|||+.|+.-.+.+
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~-pv~~~-~~~e~~a~GaA~la~~~~G~~ 453 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQ-EIVVP-ESYESSCLGACILGLKALGLI 453 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCC-eeEec-CCCCcchHHHHHHHHHhcCcc
Confidence 578999999999999999999999996 55433 345689999999998755433
No 88
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=92.41 E-value=0.34 Score=55.35 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=42.2
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
.++.|.++||+++.+...+.+.+.+|. ++... . .|+.++|||+.|+.-.+.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~-~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGI-RVIAG-P-VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCC-CeeeC-C-hhHHHHHHHHHHHHHcCCc
Confidence 477899999999999999999999996 55433 2 3799999999988655433
No 89
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=92.26 E-value=2 Score=44.99 Aligned_cols=47 Identities=17% Similarity=-0.022 Sum_probs=38.2
Q ss_pred CCccEEEEecC-ccCcHHHHHHHHHHhCC--CccCCCCCcchhHHhHHHH
Q 004058 366 DEIYAVELIGG-GTRVPKLQAKLQEYLGR--TELDRHLDADEAIVLGASL 412 (776)
Q Consensus 366 ~~i~~V~LvGG-~sriP~v~~~l~~~f~~--~~i~~~~n~deava~GAa~ 412 (776)
..+..|+++|| .+..|.+++.+...+.- .++..+-+....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 46788999999 67799999999887642 3556677889999999985
No 90
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.10 E-value=0.36 Score=55.92 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=42.1
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcC
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSD 419 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~ 419 (776)
.++.|.++||+++.+...+.+.+.+|. ++... ...|+.++|||+.|+.-.+
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~-pV~~~-~~~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGL-PVKVP-VVKEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCC-eeEEe-cccCchHHHHHHHHHHHhC
Confidence 478899999999999999999999996 55444 3456889999999886544
No 91
>PTZ00107 hexokinase; Provisional
Probab=90.45 E-value=13 Score=42.00 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCccEEEEecCcc--CcHHHHHHHHHHh----CCC-ccCCCCCcch
Q 004058 336 RQKFEELCEDLWERSLVPLREVLNY----SGLKMDEIYAVELIGGGT--RVPKLQAKLQEYL----GRT-ELDRHLDADE 404 (776)
Q Consensus 336 r~efe~l~~~~~~~i~~~i~~~l~~----a~~~~~~i~~V~LvGG~s--riP~v~~~l~~~f----~~~-~i~~~~n~de 404 (776)
+.-+..+|+-+..|...++...+.. .+.. .-..++-+-||- ..|..++.+++.+ +.. .-..-.-.+.
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~--~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D 447 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV--QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC
Confidence 3345556666777766555444432 2221 112334444443 4676666666555 332 1111223566
Q ss_pred hHHhHHHHHHHHhc
Q 004058 405 AIVLGASLLAANLS 418 (776)
Q Consensus 405 ava~GAa~~aa~ls 418 (776)
..-.|||+.||...
T Consensus 448 GSg~GAAl~AA~~~ 461 (464)
T PTZ00107 448 GSGKGAAIIAAMVA 461 (464)
T ss_pred chHHHHHHHHHHhc
Confidence 88899999998754
No 92
>PRK09698 D-allose kinase; Provisional
Probab=89.97 E-value=29 Score=36.84 Aligned_cols=43 Identities=9% Similarity=-0.103 Sum_probs=28.3
Q ss_pred hCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEE
Q 004058 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~ 233 (776)
.|++ +.+.|+..|+|++-.... ......++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~--~~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKEN--NLTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhc--CCCCceEEEEEecCc-eEEEEE
Confidence 4776 479999999988643322 122357888888866 444555
No 93
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=89.89 E-value=5.6 Score=44.56 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhccccCCCCCCcEE
Q 004058 140 ELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHV 218 (776)
Q Consensus 140 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~v 218 (776)
++...+|.|+....--....-..-+++|=+..=...+|+.|.+- .+.-|++-+.+=-+.. ++|.+.. .......-
T Consensus 95 el~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~-~~~~~~~~ 170 (645)
T KOG0681|consen 95 ELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNY-GKSSNKSG 170 (645)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhcc-CcccCcce
Confidence 45555555554432111111123477787776666788888776 4455887654311111 1111111 11223468
Q ss_pred EEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHH
Q 004058 219 VFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADE 279 (776)
Q Consensus 219 lV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 279 (776)
||+++|..+|.|-.+- +|... +....-.++||...-.-|.+++..+
T Consensus 171 liis~g~~~T~vipvl--------------dG~~i-l~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 171 LIISMGHSATHVIPVL--------------DGRLI-LKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred EEEecCCCcceeEEEe--------------cCchh-hhcceeeccCcchHHHHHHHHHhcc
Confidence 9999999998877662 33322 2223334899998765555555443
No 94
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=89.88 E-value=1 Score=51.95 Aligned_cols=81 Identities=26% Similarity=0.221 Sum_probs=49.6
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHH
Q 004058 334 ITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLL 413 (776)
Q Consensus 334 itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~ 413 (776)
-+|.+|-..+-+-+.-.....-+.|.+. ....++.|.++||++|.++..+++.+.+|. ++..+ ...|+.+.|+|..
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~-~v~~~-~~~e~~a~g~A~~ 445 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADALGL-PVVVP-EVEEAGALGGAAL 445 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHcCC-eeEec-CcccchHHHHHHH
Confidence 3666655444332222223333444443 223566899999999999999999999996 55433 4456666666666
Q ss_pred HHHhc
Q 004058 414 AANLS 418 (776)
Q Consensus 414 aa~ls 418 (776)
++...
T Consensus 446 ~~~~~ 450 (502)
T COG1070 446 AAAAL 450 (502)
T ss_pred HHHHh
Confidence 55443
No 95
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.81 E-value=2 Score=45.54 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=33.8
Q ss_pred HHHHHHHhCCceeeecchhHHHHHHh-ccccCCCCCCcEEEEEEecCccceeeEEE
Q 004058 180 LMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (776)
Q Consensus 180 l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 234 (776)
+...-+..|+++ .+|+..+=|.+.| +....+ ......+++|+|||+|.+++++
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEE
Confidence 333344569987 6677666665554 222233 2346789999999999999994
No 96
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=87.52 E-value=3.8 Score=47.06 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHHh-ccccCCCCCCcEEEEEEecCccceeeEEE
Q 004058 177 RKGLMQAAELAGMNVLSLVNEHSGAALQY-GIDKDFSNESRHVVFYDMGATTTYAALVY 234 (776)
Q Consensus 177 R~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 234 (776)
...+.++-+..|+++ ++|+..+=|.+.| +....++. .+..+|+|+|||+|.+++++
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~-~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGG-ADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCC-CCCEEEEEecCCeeeEEEec
Confidence 444555556679997 6777776666655 33333332 24689999999999999983
No 97
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=86.92 E-value=14 Score=39.75 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC-cc-CCCCCc----chhHHhHHHHHHHHhcC
Q 004058 346 LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT-EL-DRHLDA----DEAIVLGASLLAANLSD 419 (776)
Q Consensus 346 ~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~-~i-~~~~n~----deava~GAa~~aa~ls~ 419 (776)
+++.+.+.|...+. ...+.+.|+|.|-.+++|-+.+.+++.|+.. ++ ...+.+ -...|.|||+.|.-+.+
T Consensus 243 ~~E~i~k~V~~l~~----~~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 243 MIESIVKAVASLLA----SVPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred HHHHHHHHHHHHhc----ccCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 44444444443332 2346788999999999999888888777442 10 111222 23489999999987765
Q ss_pred C
Q 004058 420 G 420 (776)
Q Consensus 420 ~ 420 (776)
.
T Consensus 319 G 319 (343)
T PF07318_consen 319 G 319 (343)
T ss_pred c
Confidence 4
No 98
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=86.64 E-value=3.2 Score=43.38 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHH-HHHhCCceeeecchhHHHHHHhcc-ccCC----CCCCcEEEEEEecCccceeeE-EE
Q 004058 162 KDFVISVPPYFGQAERKGLMQA-AELAGMNVLSLVNEHSGAALQYGI-DKDF----SNESRHVVFYDMGATTTYAAL-VY 234 (776)
Q Consensus 162 ~~~VitVPa~f~~~qR~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~-~~~~----~~~~~~vlV~D~GggT~dvsv-~~ 234 (776)
..+|+|=|.+--+.-.+.+.+. .+.-+|. .+..-+.|+.+++.. .++. .......+|+|-|.+-|-+.- +.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd--~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFD--AVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccc--eEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 4689999987655444443333 4445554 345555555444431 1111 123458999999998665433 32
Q ss_pred EeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHH
Q 004058 235 FSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFA 277 (776)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 277 (776)
.. ...... + -..+||..+++.|.+.+-
T Consensus 172 g~---------~~~qaV---~----RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 GI---------PYYQAV---K----RIDVGGKALTNLLKETIS 198 (400)
T ss_pred Cc---------chhhce---E----EeecchHHHHHHHHHHhh
Confidence 11 112221 1 126999999998887775
No 99
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=86.36 E-value=2.6 Score=44.25 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHh----CCCccCCCCCcchhHHhHHHHHH
Q 004058 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYL----GRTELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f----~~~~i~~~~n~deava~GAa~~a 414 (776)
+++...+.+.+.+...+.+....... |+|+||..+.+.+++.+.+.+ +..++..+..|....+.||+++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44445555556666666655443222 999999999977777664433 33244567789999999999986
No 100
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=85.65 E-value=3.8 Score=40.32 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCC
Q 004058 135 NFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFG 173 (776)
Q Consensus 135 ~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~ 173 (776)
...++ .++..++.+.+.++..++.++..+++++|...-
T Consensus 42 I~d~~-~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v 79 (187)
T smart00842 42 IVDIE-AAARAIREAVEEAERMAGVKIDSVYVGISGRHL 79 (187)
T ss_pred EECHH-HHHHHHHHHHHHHHHHhCCcccEEEEEEcCCce
Confidence 34443 447788888888898889899999999998753
No 101
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=85.55 E-value=55 Score=34.98 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHHHHHHhh--cCCCCCcEEEEcCCCCCHHH------------HHHHHHHH-HHhCCceeeecchhHHH
Q 004058 137 SVEELLAMVLSYAVNLVDTH--AKLAVKDFVISVPPYFGQAE------------RKGLMQAA-ELAGMNVLSLVNEHSGA 201 (776)
Q Consensus 137 ~~eel~a~~L~~l~~~a~~~--~~~~~~~~VitVPa~f~~~q------------R~~l~~Aa-~~AGl~~~~li~Ep~AA 201 (776)
++++++..+...+.+..... ...++..+.|++|..++... .-.+.+.. +..|+++ .+.|+..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv-~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPV-VVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCE-EEechHHHH
Confidence 56666666555555544432 12345667888887554211 11233333 2347764 699999999
Q ss_pred HHHhccccCCCCCCcEEEEEEecCccceeeEE
Q 004058 202 ALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 202 Al~y~~~~~~~~~~~~vlV~D~GggT~dvsv~ 233 (776)
|++-..... ....++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~-~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGA-GKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhcc-cCCCCcEEEEEeCCcc-EEEEE
Confidence 987543221 1224678888999874 55655
No 102
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=85.37 E-value=7.8 Score=42.29 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCC----CCCcchhHHhHHHHHHHH
Q 004058 349 RSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDR----HLDADEAIVLGASLLAAN 416 (776)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~----~~n~deava~GAa~~aa~ 416 (776)
-+...|.+.+.... ...+.|+++||+++.|++.+.|++.++. ++.. ..++|.-=|..-|++|..
T Consensus 271 ~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~-~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 271 LTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPT-EVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCC-cccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33444455554332 2346899999999999999999999962 3221 134443334445556543
No 103
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=84.00 E-value=1.5 Score=48.87 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=40.9
Q ss_pred ccEEEEecCccCcHHHHHHHHHHhCC------C-ccCCCCCcchhHHhHHHHHHHH
Q 004058 368 IYAVELIGGGTRVPKLQAKLQEYLGR------T-ELDRHLDADEAIVLGASLLAAN 416 (776)
Q Consensus 368 i~~V~LvGG~sriP~v~~~l~~~f~~------~-~i~~~~n~deava~GAa~~aa~ 416 (776)
+..|+|+||+|.+|.+.+.|+.-+-. . .+....||-..+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 78899999999999999999876522 1 4556778888899999999886
No 104
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.79 E-value=4.4 Score=46.08 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCceeeecchhHHHHHH-hccccCCCCCCcEEEEEEecCccceeeEEE
Q 004058 177 RKGLMQAAELAGMNVLSLVNEHSGAALQ-YGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (776)
Q Consensus 177 R~~l~~Aa~~AGl~~~~li~Ep~AAAl~-y~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 234 (776)
-+.+..+-+..|+++ .+|+.-+=|-+. ++.-..++. ....+|+|+|||+|.+++..
T Consensus 91 ~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 91 DEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEec
Confidence 455777777889987 565554444433 344444443 57799999999999999984
No 105
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=81.90 E-value=5.2 Score=43.84 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.5
Q ss_pred CCcEEEEEcCccceEEEEEEe
Q 004058 23 QSAVSSVDLGSEWLKVAVVNL 43 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~ 43 (776)
...++.||||.||.++|.+..
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l 94 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVL 94 (466)
T ss_pred CCCEEEEecCCceEEEEEEEe
Confidence 457999999999999999864
No 106
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=81.79 E-value=4.8 Score=43.96 Aligned_cols=70 Identities=27% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCcc------CCCCCcchhHHhHHHHHHH
Q 004058 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTEL------DRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i------~~~~n~deava~GAa~~aa 415 (776)
++.-+.+-+...|.+.++.... +++.|+++||+.+.|++.+.|++.++..++ ..+.+.-||++. |++|.
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La~ 336 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHHH
Confidence 3334444444455555554432 378999999999999999999999987433 333455555554 45554
Q ss_pred H
Q 004058 416 N 416 (776)
Q Consensus 416 ~ 416 (776)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 107
>PLN02666 5-oxoprolinase
Probab=81.74 E-value=14 Score=47.16 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=48.7
Q ss_pred eeHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 334 ITRQKFEELCED-LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 334 itr~efe~l~~~-~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
++-++...-+.. .-..+.+.|+......|.++.+. .++..||+ =|..--.|.+.+|-+.+..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 344444433333 33344556666666667766543 23444554 477778899999987787888898889999875
No 108
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=80.49 E-value=6.2 Score=42.92 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=81.6
Q ss_pred cEEEEEcCccceEEEEEEeeCC--CCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhhCCCc
Q 004058 25 AVSSVDLGSEWLKVAVVNLKPG--QSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMIGKPF 102 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~~~~g--~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llG~~~ 102 (776)
.++-||=|+|-|+|-++....+ +.|.++ ..+-=+...|=.-+| ..+|......+..||....
T Consensus 68 Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~l-e~E~F~~~kPGLSsf---------------addp~~aA~Sl~~LLd~A~ 131 (453)
T KOG1385|consen 68 YAIIIDAGSTGTRVHVYKFDQCLPGMPPEL-EHELFKEVKPGLSSF---------------ADDPEEAANSLRPLLDVAE 131 (453)
T ss_pred EEEEEecCCCcceEEEEEeccCCCCCCchh-HHHHHhhcCCccccc---------------CCChHHHHHhHHHHHHHHH
Confidence 5788999999999988732111 111110 000000111222223 2334455556666666533
Q ss_pred hhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHH
Q 004058 103 KQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQ 182 (776)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~ 182 (776)
+.+... +|+ .-.+.++..-|-+..+.+-...+|+.+++..+...--++..-.|+|=..-.
T Consensus 132 ~~vP~~----~~~-------kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~Gtd--------- 191 (453)
T KOG1385|consen 132 AFVPRE----HWK-------KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTD--------- 191 (453)
T ss_pred hhCCHh----Hhc-------cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcc---------
Confidence 222211 111 122444444456677888899999999988774322222111111110000
Q ss_pred HHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEE
Q 004058 183 AAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (776)
Q Consensus 183 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 234 (776)
-| +...| .++|....-.......+.|+|+|||+|.++..-
T Consensus 192 ----EG--v~aWi------TiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 192 ----EG--VYAWI------TINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ----cc--eeeee------ehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 01 11111 245655442223357899999999999999873
No 109
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=78.72 E-value=20 Score=36.59 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccC-CCCCCcEEEEEEec
Q 004058 146 LSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKD-FSNESRHVVFYDMG 224 (776)
Q Consensus 146 L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~-~~~~~~~vlV~D~G 224 (776)
..++.+.++...+.++ .++++-..|... +++.+--+. |||-+-+.-+- ....++..+++|+|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~v-------------AAaNW~Ata~~~~e~~~dsci~VD~G 138 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREV-------------AAANWVATARFLAEEIKDSCILVDMG 138 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHH-------------HHhhhHHHHHHHHHhcCCceEEEecC
Confidence 3456666666677665 889999988764 222211111 11111111010 01224679999999
Q ss_pred CccceeeEEE
Q 004058 225 ATTTYAALVY 234 (776)
Q Consensus 225 ggT~dvsv~~ 234 (776)
+.|+|+--+.
T Consensus 139 STTtDIIPi~ 148 (330)
T COG1548 139 STTTDIIPIK 148 (330)
T ss_pred CcccceEeec
Confidence 9999987763
No 110
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=77.79 E-value=9.7 Score=40.62 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHH-HHhCCceeeecchhHHHHHHhc-cccCCCCCCcEEE
Q 004058 142 LAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAA-ELAGMNVLSLVNEHSGAALQYG-IDKDFSNESRHVV 219 (776)
Q Consensus 142 ~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~-~~~~~~~~~~~vl 219 (776)
+...|+.+++.+..+ +..-..+|-|---. ...-++.+.+.. +..|+++ ++|+...=|.+.|. ....+... ..+
T Consensus 54 ~~~~l~~f~~~~~~~-~v~~i~~vaTsa~R-~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~--~~~ 128 (300)
T TIGR03706 54 ALEALKRFAELLRGF-PVDEVRAVATAALR-DAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIA--DGL 128 (300)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEEEcHHHH-cCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCC--CcE
Confidence 335566666666543 22211222222222 222244445444 4569987 68888877777663 33333222 249
Q ss_pred EEEecCccceeeEEE
Q 004058 220 FYDMGATTTYAALVY 234 (776)
Q Consensus 220 V~D~GggT~dvsv~~ 234 (776)
++|+|||+|.++++.
T Consensus 129 v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 129 VVDIGGGSTELILGK 143 (300)
T ss_pred EEEecCCeEEEEEec
Confidence 999999999999883
No 111
>PLN02362 hexokinase
Probab=76.78 E-value=5 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.4
Q ss_pred CcEEEEEcCccceEEEEEEee
Q 004058 24 SAVSSVDLGSEWLKVAVVNLK 44 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~ 44 (776)
...++||||.||.+|+.+...
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~ 115 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRVQLG 115 (509)
T ss_pred eeEEEEecCCceEEEEEEEec
Confidence 469999999999999999653
No 112
>PLN02405 hexokinase
Probab=76.35 E-value=7.7 Score=44.21 Aligned_cols=55 Identities=25% Similarity=0.177 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCC--ceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEE
Q 004058 174 QAERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 174 ~~qR~~l~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~ 233 (776)
..-.+.|.+|.+.-|+ ++..|+|+.++.-++.++.. +...+-+=+|-||=-+.+-
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-----~~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 205 QDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-----PDVVAAVILGTGTNAAYVE 261 (497)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-----CCceEEEEEeCCeeeEEEe
Confidence 3345566666666666 56889999999877654433 2333333367775444433
No 113
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=75.50 E-value=60 Score=38.71 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCc--HHHHH-HHHHHhCCC--------ccCC-CCCcchhHHhH
Q 004058 342 LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRV--PKLQA-KLQEYLGRT--------ELDR-HLDADEAIVLG 409 (776)
Q Consensus 342 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sri--P~v~~-~l~~~f~~~--------~i~~-~~n~deava~G 409 (776)
++...++.+...+-..+...-....+.+.|+|-||-+.- +++.+ .+.+.|..+ .+.. -+--+.+.-.|
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~G 323 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLG 323 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHH
Confidence 344455555555555554433333346788888888633 55553 566666432 1111 11223467788
Q ss_pred HHHHHH
Q 004058 410 ASLLAA 415 (776)
Q Consensus 410 Aa~~aa 415 (776)
||-++.
T Consensus 324 aa~~~~ 329 (638)
T PRK14101 324 VSAILA 329 (638)
T ss_pred HHHHHH
Confidence 865543
No 114
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=75.48 E-value=21 Score=36.67 Aligned_cols=72 Identities=24% Similarity=0.361 Sum_probs=47.3
Q ss_pred CCCCCcEEE--EcCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEE
Q 004058 158 KLAVKDFVI--SVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 158 ~~~~~~~Vi--tVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~ 233 (776)
+..+..++. .+|.+|+. -+++++++.-.|.+. -+++-..||.+....+..- .....++++|+|-|+|=+.++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v-~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV-SSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh-hccCCeEEEEeCCccEEEEEE
Confidence 445667777 89999874 345666666666655 4555555555544333322 234679999999999888888
No 115
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=74.43 E-value=11 Score=42.01 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 349 RSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
+..+.++..=++++. .+..+-+=||.++..++-+...+.++. ++.++. -.|..|+|||+.|..-.+..
T Consensus 387 Q~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~-~V~Rp~-~~EtTAlGaA~lAGla~G~w 454 (499)
T COG0554 387 QTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGV-PVERPV-VLETTALGAAYLAGLAVGFW 454 (499)
T ss_pred HHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCC-eeeccc-cchhhHHHHHHHHhhhhCcC
Confidence 344444444344443 577888889999999999999999996 565554 46789999999998766543
No 116
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=61 Score=35.10 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=42.0
Q ss_pred CCCCccEEEEecCccCcHHHHHHHHHHhCCCccC----CCCCcchhHHhHHHHHHHHh
Q 004058 364 KMDEIYAVELIGGGTRVPKLQAKLQEYLGRTELD----RHLDADEAIVLGASLLAANL 417 (776)
Q Consensus 364 ~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~----~~~n~deava~GAa~~aa~l 417 (776)
-..+.+.++++||+.+.|++.+.|...++...+. ..+++|..=|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 3457788999999999999999999999653432 25677777777778877654
No 117
>PRK14878 UGMP family protein; Provisional
Probab=74.27 E-value=1.3e+02 Score=32.38 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.6
Q ss_pred CccEEEEecCccCcHHHHHHHHHHh
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYL 391 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f 391 (776)
.+..|+|+||-+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 4668999999999999999999976
No 118
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.89 E-value=4.7 Score=47.73 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=27.9
Q ss_pred eeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEE
Q 004058 191 VLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVY 234 (776)
Q Consensus 191 ~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 234 (776)
+..+.+-|.|-.+....-..... + +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~~-g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLKA-G-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccccc-C-CEEEEEcCCcceeeeeee
Confidence 34467777776554433211111 1 599999999999999996
No 119
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=72.82 E-value=5.7 Score=36.87 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=17.7
Q ss_pred CcEEEEEcCccceEEEEEEeeCC
Q 004058 24 SAVSSVDLGSEWLKVAVVNLKPG 46 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~~~~g 46 (776)
|.++|||+|+..+.+|+. .+.
T Consensus 1 mriL~lD~G~kriGiAvs--d~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVS--DPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEE--ETT
T ss_pred CeEEEEEeCCCeEEEEEe--cCC
Confidence 468999999999999998 444
No 120
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=72.16 E-value=16 Score=38.38 Aligned_cols=52 Identities=27% Similarity=0.432 Sum_probs=40.7
Q ss_pred CccEEEEecC--ccCcH-HHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCCc
Q 004058 367 EIYAVELIGG--GTRVP-KLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDGI 421 (776)
Q Consensus 367 ~i~~V~LvGG--~sriP-~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~~ 421 (776)
....|+|.|- ++|.| .+++.|+++|.. ++ ..+.. ++.|.|+|+.|.-+.+..
T Consensus 262 ~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~-~V-~~L~~-ksAA~G~AiIA~dI~gGk 316 (326)
T TIGR03281 262 KEAGVVLAGSGGTLREPINFSGKIKRVLSC-KV-LVLDS-ESAAIGLALIAEDIFSGK 316 (326)
T ss_pred CCCcEEEeCcchhccCchHHHHHHHHHhCC-Ce-EEecc-hhhhhhHHHHHHHHhCCc
Confidence 3447999987 99999 999999999974 32 23333 789999999998877654
No 121
>PLN02914 hexokinase
Probab=72.05 E-value=12 Score=42.44 Aligned_cols=56 Identities=21% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCC--ceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEE
Q 004058 175 AERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYF 235 (776)
Q Consensus 175 ~qR~~l~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 235 (776)
.-.+.|.+|.+.-|+ ++..|+|+.+|.-++..+.. +...+-+=+|-||=-+.+-++
T Consensus 206 DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-----~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 206 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-----DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred hHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-----CCceEEEEEECCeeeEEEeec
Confidence 334555566555554 57889999999877654433 123333336777555444443
No 122
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=70.47 E-value=8.8 Score=43.07 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=45.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCc---eeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEe
Q 004058 168 VPPYFGQAERKGLMQAAELAGMN---VLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFS 236 (776)
Q Consensus 168 VPa~f~~~qR~~l~~Aa~~AGl~---~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~ 236 (776)
++......--+.+.+|.+.-|+. +..++|+.++.-++..+.. +++++-+=+|.||=-+-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-----~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-----PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-----CCcEEEEEECCCccceeeeecc
Confidence 44444455567788888888875 6889999999887765543 3566666689998777666554
No 123
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=68.61 E-value=14 Score=28.79 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=26.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHhCCce
Q 004058 163 DFVISVPPYFGQAERKGLMQAAELAGMNV 191 (776)
Q Consensus 163 ~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 191 (776)
...++.|+.++..+|..+.+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 57899999999999999999999999875
No 124
>PRK00976 hypothetical protein; Provisional
Probab=68.35 E-value=15 Score=39.17 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=39.2
Q ss_pred CccEEEEecCccCcH--HHHHHHHHHhCCCccCCCCCcchhHHhHHHHHHHHhcCC
Q 004058 367 EIYAVELIGGGTRVP--KLQAKLQEYLGRTELDRHLDADEAIVLGASLLAANLSDG 420 (776)
Q Consensus 367 ~i~~V~LvGG~sriP--~v~~~l~~~f~~~~i~~~~n~deava~GAa~~aa~ls~~ 420 (776)
+++.|+|-||-++.+ .+.+.+++.+.. . ...-..++.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhCC
Confidence 577899999999998 889999988854 2 22234579999999998776543
No 125
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=67.74 E-value=15 Score=40.15 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=56.4
Q ss_pred EeeHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCccE-EEEecCccCcHHHHHHHHHHhCCCccC-CCCCcchhHHhH
Q 004058 333 SITRQKFEELCEDLWERS-LVPLREVLNYSGLKMDEIYA-VELIGGGTRVPKLQAKLQEYLGRTELD-RHLDADEAIVLG 409 (776)
Q Consensus 333 ~itr~efe~l~~~~~~~i-~~~i~~~l~~a~~~~~~i~~-V~LvGG~sriP~v~~~l~~~f~~~~i~-~~~n~deava~G 409 (776)
.-.+.++-..++..++++ ...++.++++.+ ++. +.|.||....-.....|.+..+-+.+. .+.-.|+-++.|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 456677777777777665 455666666655 345 999999999998888888875554443 344569999999
Q ss_pred HHHHHHHhcC
Q 004058 410 ASLLAANLSD 419 (776)
Q Consensus 410 Aa~~aa~ls~ 419 (776)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999886443
No 126
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=67.55 E-value=1.8e+02 Score=31.19 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=33.7
Q ss_pred CccEEEEecCccCcHHHHHHHHHHh---CCCccCCC---CCcchhHHhHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYL---GRTELDRH---LDADEAIVLGAS 411 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f---~~~~i~~~---~n~deava~GAa 411 (776)
.++.|+|.||.+...++.+.|.+.+ +- .+..+ +-.|.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~-~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGL-EVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCC-EEECCCCCCCChHHHHHHHH
Confidence 5678999999999999999999887 33 22222 245888888887
No 127
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=65.84 E-value=6.1 Score=34.04 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=16.0
Q ss_pred cEEEEEcCccceEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (776)
.++|||+|.|++++|++
T Consensus 2 ~ilgiD~Ggt~i~~a~~ 18 (99)
T smart00732 2 RVLGLDPGRKGIGVAVV 18 (99)
T ss_pred cEEEEccCCCeEEEEEE
Confidence 48999999999999998
No 128
>PLN02596 hexokinase-like
Probab=64.63 E-value=11 Score=42.79 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCC--ceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEE
Q 004058 176 ERKGLMQAAELAGM--NVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYF 235 (776)
Q Consensus 176 qR~~l~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 235 (776)
--+.+.+|.+.-|+ ++..++|+.++.-++.++.. ++..+-+=+|-||=-+.+-++
T Consensus 207 vv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-----~~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 207 LVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-----KDTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-----CCeEEEEEEecccceEEEEEc
Confidence 34445566555555 57899999999877655543 233333337777654444434
No 129
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=64.19 E-value=92 Score=31.30 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=45.1
Q ss_pred EeeHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC--ccCCCCCcchhHHhH
Q 004058 333 SITRQKFEE-LCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHLDADEAIVLG 409 (776)
Q Consensus 333 ~itr~efe~-l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~~n~deava~G 409 (776)
.+|.+++-= +-+.+|.-+.+.-++++...+ -+.|++|||-...-.+|+++.....+. ++ ...|-..|+-.|
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~-faTDeRfCIDNG 297 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKL-FATDERFCIDNG 297 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCce-EecccceeeeCc
Confidence 345544432 223344445555566665443 357999999999999999999887543 22 223444466667
Q ss_pred HHHH
Q 004058 410 ASLL 413 (776)
Q Consensus 410 Aa~~ 413 (776)
+-+.
T Consensus 298 ~MIA 301 (336)
T KOG2708|consen 298 VMIA 301 (336)
T ss_pred hHHH
Confidence 6543
No 130
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.91 E-value=36 Score=34.86 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=52.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeeccccccCcee
Q 004058 168 VPPYFGQAERKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTV 247 (776)
Q Consensus 168 VPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~ 247 (776)
+|.+|+. -|.+...| ..++-. ..+++.--||+....++. .....||+|+|-|++..+++.
T Consensus 186 iPe~FtR-Mraaa~sa-l~~~t~-av~mDskfaav~gal~dp----aa~palvVd~GngHttaalvd------------- 245 (342)
T COG4012 186 IPESFTR-MRAAAMSA-LSAGTD-AVAMDSKFAAVMGALVDP----AADPALVVDYGNGHTTAALVD------------- 245 (342)
T ss_pred CchhHHH-HHHHHHHH-HhcCce-EEEEcchhHhhhhcccCc----ccCceEEEEccCCceEEEEec-------------
Confidence 6777763 22222222 223433 346666666666555543 224799999999999999983
Q ss_pred ccCeEEEEEeecCCCCchHHHHHHHHHHHHHHH
Q 004058 248 SVNQFQVKDVRWDAELGGQNMELRLVEYFADEF 280 (776)
Q Consensus 248 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~ 280 (776)
.+.+.-+-......+.-..|...|.+++.-++
T Consensus 246 -edRI~gv~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 246 -EDRIVGVYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred -CCeEEEEeecccccCCHHHHHHHHHHHHhccc
Confidence 33444333344445666655555555554443
No 131
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=63.45 E-value=22 Score=27.85 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCce
Q 004058 150 VNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (776)
Q Consensus 150 ~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 191 (776)
.+....+.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444444433 357899999999999999999999999976
No 132
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=62.85 E-value=8 Score=39.76 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=16.3
Q ss_pred cEEEEEcCccceEEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (776)
.++|||+|||++++++++
T Consensus 1 y~lgiDiGTts~K~~l~d 18 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD 18 (245)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred CEEEEEEcccceEEEEEe
Confidence 379999999999999994
No 133
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=62.07 E-value=73 Score=34.26 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=37.3
Q ss_pred eeHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhC
Q 004058 334 ITRQKFEELCED----LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (776)
Q Consensus 334 itr~efe~l~~~----~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (776)
+..++.+++|.. .++-+.+..+++|+..+ .+.++++||-+..-.+|+++++...
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHH
Confidence 334444445543 45555555666666544 4579999999999999999998774
No 134
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=61.81 E-value=16 Score=34.09 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=17.4
Q ss_pred CCcEEEEEcCccceEEEEE
Q 004058 23 QSAVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~ 41 (776)
.+.++|||+|+..+.+|+.
T Consensus 3 ~~~iLalD~G~kriGvAv~ 21 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVS 21 (138)
T ss_pred CCcEEEEEeCCCEEEEEEe
Confidence 5669999999999999998
No 135
>PRK09557 fructokinase; Reviewed
Probab=61.71 E-value=50 Score=35.05 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=28.2
Q ss_pred hCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEE
Q 004058 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~ 233 (776)
.|+++ .+.|+..|+|++-..... ....+.++++.+|.| +-.+++
T Consensus 96 ~~~pv-~~~NDa~aaA~aE~~~g~-~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNREV-RLANDANCLAVSEAVDGA-AAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCCE-EEccchhHHHHHHHHhcc-cCCCCcEEEEEEccc-eEEEEE
Confidence 37764 699999999987533221 122366788888755 445555
No 136
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=61.22 E-value=2.3e+02 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHh
Q 004058 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYL 391 (776)
Q Consensus 350 i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f 391 (776)
+.+.++.+++. ..++.|+|.||-....++++.|.+.+
T Consensus 246 l~~~~~~~~~~-----~g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 246 LIEKTKRALKD-----TGPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33444444443 25678999999999999999999887
No 137
>PRK03011 butyrate kinase; Provisional
Probab=60.42 E-value=15 Score=40.29 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=36.4
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCC---CccCCCCCcchhHHhHHHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGR---TELDRHLDADEAIVLGASLL 413 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~---~~i~~~~n~deava~GAa~~ 413 (776)
++|.|+|.||.+..+.+.+.|++.+.. ..+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 689999999999999999988876642 24445556667999998744
No 138
>PRK09604 UGMP family protein; Validated
Probab=59.23 E-value=2.6e+02 Score=30.22 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=35.5
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCC--ccCCCC---CcchhHHhHHHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHL---DADEAIVLGASLL 413 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~~---n~deava~GAa~~ 413 (776)
+++.|+|.||.....++++.|.+.+... ++..+. -.|.+++.|++=+
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 5678999999999999999999987321 332222 4588999998844
No 139
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.40 E-value=15 Score=33.31 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=19.3
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHH
Q 004058 714 EAQEWLYTDGEDATAKEFQERLD 736 (776)
Q Consensus 714 e~~~WL~~~g~~a~~~~~~~k~~ 736 (776)
..++||++|++-.|.++|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 36789999999999999997753
No 140
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=56.94 E-value=19 Score=43.22 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=37.8
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCC--ccCC---CCCcchhHHhHHHHHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDR---HLDADEAIVLGASLLAA 415 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~---~~n~deava~GAa~~aa 415 (776)
.++.|+|+||.....++.+.|.+.++.. ++.. .+-.|.+++.|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999887532 2222 23458899999988774
No 141
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=54.78 E-value=1.8e+02 Score=30.96 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred hcCCCCcEEEEEcCccceEEEEEEeeCCCCCEEEEeCCCCCcccceEEEEeCCceEEcHhHHHhHhhCcchHHHHHHHhh
Q 004058 19 VSHSQSAVSSVDLGSEWLKVAVVNLKPGQSPISIAINEMSKRKSPALVAFHESTRLLGEEASGIIARYPHRVYSQLRDMI 98 (776)
Q Consensus 19 ~~~~~~~vvGID~GTt~s~va~~~~~~g~~~v~ii~n~~g~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~ll 98 (776)
.....+.++|||+|.|++.+++. ......+
T Consensus 1 ~~~~~~~~lgidIggt~i~~~l~--d~~g~~l------------------------------------------------ 30 (314)
T COG1940 1 LNPEAMTVLGIDIGGTKIKVALV--DLDGEIL------------------------------------------------ 30 (314)
T ss_pred CCccCcEEEEEEecCCEEEEEEE--CCCCcEE------------------------------------------------
Q ss_pred CCCchhhHhhHhhcCCCceEeeCCCCceEEEeCCCccccHHHHHHHHHHHHHHHHHhh-cCCCCCcEEEEcCCCCCHHH-
Q 004058 99 GKPFKQVKHLIDSLYLPFNVVEDSRGAVSFKIDENNNFSVEELLAMVLSYAVNLVDTH-AKLAVKDFVISVPPYFGQAE- 176 (776)
Q Consensus 99 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~-~~~~~~~~VitVPa~f~~~q- 176 (776)
...+..-...-..+.+...++..+.+..... .......+.++.|.......
T Consensus 31 ---------------------------~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg~~~~~~~ 83 (314)
T COG1940 31 ---------------------------LRERIPTPTPDPEEAILEAILALVAELLKQAQGRVAIIGIGIPGPGDVDNGTV 83 (314)
T ss_pred ---------------------------EEEEEecCCCCchhHHHHHHHHHHHHHHHhcCCcCceEEEEeccceeccCCcE
Q ss_pred ------------HHHHHHHHHHhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCc
Q 004058 177 ------------RKGLMQAAELAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGAT 226 (776)
Q Consensus 177 ------------R~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~Ggg 226 (776)
-..-..-.+..|+++ .+-|+..|+|++-.+...- .....++++-+|-|
T Consensus 84 ~~~~~~~~~~~~~~l~~~L~~~~~~Pv-~veNDan~aalaE~~~g~~-~~~~~~~~i~~gtG 143 (314)
T COG1940 84 IVPAPNLGWWNGVDLAEELEARLGLPV-FVENDANAAALAEAWFGAG-RGIDDVVYITLGTG 143 (314)
T ss_pred EeecCCCCccccccHHHHHHHHHCCCE-EEecHHHHHHHHHHHhCCC-CCCCCEEEEEEccc
No 142
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=53.26 E-value=1.6e+02 Score=25.84 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHhh
Q 004058 702 SEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQVLH 774 (776)
Q Consensus 702 ~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~pi~~R~~e~~~rp~~~~~~~~~l~~~~~~~~ 774 (776)
++-..+|...++++++-|.+.| +...+++.+-...+++.......|+.+.. -..++..+.....+..+|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg-~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~--d~v~~~sk~a~~~tD~yV~ 80 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSG-SLAGDEAEELRSKAESALKEARDRLGDTG--DAVVQRSKAAADATDDYVR 80 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH
Confidence 4556788888999999999887 55566777777777777777777777664 4566667777776666665
No 143
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=52.89 E-value=3.2e+02 Score=29.34 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=30.9
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCC--ccCCC---CCcchhHHhH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRH---LDADEAIVLG 409 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~---~n~deava~G 409 (776)
.++.|+|.||-....++.+.|.+.+... ++..+ +-.|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 4668999999999999999999865321 22222 2357788888
No 144
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=50.22 E-value=14 Score=42.74 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=17.2
Q ss_pred CcEEEEEcCccceEEEEEE
Q 004058 24 SAVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~ 42 (776)
..++|||+|||++++++++
T Consensus 3 ~~~lgID~GTts~Ka~l~d 21 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFD 21 (520)
T ss_pred cEEEEEecCCCceEEEEEC
Confidence 3699999999999999994
No 145
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=50.10 E-value=48 Score=33.21 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCCcEEEEEEecCccceeeEEEEe
Q 004058 213 NESRHVVFYDMGATTTYAALVYFS 236 (776)
Q Consensus 213 ~~~~~vlV~D~GggT~dvsv~~~~ 236 (776)
.+...+|++|+||.++-++++++.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~ 83 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELS 83 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEEEc
Confidence 345789999999999999999986
No 146
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=49.86 E-value=46 Score=26.04 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.4
Q ss_pred HHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCce
Q 004058 151 NLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (776)
Q Consensus 151 ~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 191 (776)
+....+...+ ....+..|+.++..||..+.+.|+..||..
T Consensus 6 ~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 6 AMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 3334443333 236789999999999999999999999865
No 147
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=49.60 E-value=11 Score=40.48 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=31.3
Q ss_pred eeHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCCC
Q 004058 334 ITRQKFEELCEDLWER----SLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGRT 394 (776)
Q Consensus 334 itr~efe~l~~~~~~~----i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~~ 394 (776)
++.++.+++...+++. +.+.|+.++.+.+.++ +..||.+ |++-..+.+.+|-.
T Consensus 245 ~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 245 LGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLGRE 301 (318)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcCCC
Confidence 3445566666555544 4445555555445543 5556655 78888888877754
No 148
>PRK10331 L-fuculokinase; Provisional
Probab=49.55 E-value=17 Score=41.55 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=16.6
Q ss_pred cEEEEEcCccceEEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (776)
.++|||+|||++++++++
T Consensus 3 ~~lgID~GTt~~Ka~l~d 20 (470)
T PRK10331 3 VILVLDCGATNVRAIAVD 20 (470)
T ss_pred eEEEEecCCCceEEEEEc
Confidence 589999999999999993
No 149
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=48.33 E-value=18 Score=41.77 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=16.6
Q ss_pred cEEEEEcCccceEEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (776)
.++|||+|||++++++++
T Consensus 3 ~~lgiDiGTts~Ka~l~d 20 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFD 20 (504)
T ss_pred EEEEEecCCCceEEEEEC
Confidence 589999999999999993
No 150
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=47.85 E-value=15 Score=42.44 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.0
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 004058 23 QSAVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~ 42 (776)
+..++|||+|||++++.+++
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d 22 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFD 22 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEe
Confidence 56799999999999999993
No 151
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=47.34 E-value=21 Score=33.84 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 004058 26 VSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (776)
|+|||.|++++..|++.
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999983
No 152
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=46.97 E-value=85 Score=25.67 Aligned_cols=55 Identities=11% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHhhh----HHHHHHH-hhhhchHHHHHHHHHHHHHHHHhhh
Q 004058 716 QEWLYTDGEDATAKEFQERLDVLKAIGD----PVFFRFK-ELTARPASVEHAQKYLGQLQQVLHM 775 (776)
Q Consensus 716 ~~WL~~~g~~a~~~~~~~k~~~L~~~~~----pi~~R~~-e~~~rp~~~~~~~~~l~~~~~~~~~ 775 (776)
+.||.++ +++..+|.+.+-++.+ ..-.|+. -+..||+.|+.++..-...+.+.++
T Consensus 13 skWL~~~-----l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAer 72 (74)
T PF07765_consen 13 SKWLQEN-----LSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAER 72 (74)
T ss_pred CHHHHHH-----HHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 3466544 5566666655544433 2333333 3668899999999999888887664
No 153
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=46.07 E-value=17 Score=33.86 Aligned_cols=18 Identities=28% Similarity=0.483 Sum_probs=16.9
Q ss_pred CcEEEEEcCccceEEEEE
Q 004058 24 SAVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~ 41 (776)
+.++||||||-.+.+|+.
T Consensus 2 ~~ilalD~G~KrIGvA~s 19 (141)
T COG0816 2 MRILALDVGTKRIGVAVS 19 (141)
T ss_pred ceEEEEecCCceEEEEEe
Confidence 579999999999999998
No 154
>PRK15027 xylulokinase; Provisional
Probab=45.47 E-value=17 Score=41.74 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 004058 26 VSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (776)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (484)
T PRK15027 2 YIGIDLGTSGVKVILLN 18 (484)
T ss_pred EEEEEecccceEEEEEc
Confidence 79999999999999994
No 155
>PLN02920 pantothenate kinase 1
Probab=45.11 E-value=90 Score=34.36 Aligned_cols=50 Identities=12% Similarity=-0.155 Sum_probs=35.2
Q ss_pred CCCccEEEEecCccCcH-HHHHHHHHH---h--CCCccCCCCCcchhHHhHHHHHH
Q 004058 365 MDEIYAVELIGGGTRVP-KLQAKLQEY---L--GRTELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 365 ~~~i~~V~LvGG~sriP-~v~~~l~~~---f--~~~~i~~~~n~deava~GAa~~a 414 (776)
..+++.|+++|+..|.+ ..++.|.-. . +..+....-+.....|+||++..
T Consensus 295 ~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 295 RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 35788999999999998 666644432 2 22344455677789999998664
No 156
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=44.88 E-value=2.1e+02 Score=29.04 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=33.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhH
Q 004058 697 EKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDP 744 (776)
Q Consensus 697 ~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~p 744 (776)
.+--+..+..++.+.-.....||+++. -.+++|+++|+++++.
T Consensus 209 d~t~~~~qi~Kilnah~~sLqwl~d~s-----t~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 209 DKTDPIIQIEKILNAHMDSLQWLDDNS-----TQLEKKLDKIKKLKDD 251 (254)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHhhhcc
Confidence 344457788999999999999999873 3567888888887753
No 157
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=44.00 E-value=19 Score=41.01 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (776)
.++|||+|||++++++++
T Consensus 2 ~ilgiD~GTss~K~~l~d 19 (465)
T TIGR02628 2 VILVLDCGATNLRAIAIN 19 (465)
T ss_pred eEEEEecCCCcEEEEEEc
Confidence 489999999999999994
No 158
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=43.12 E-value=3.6e+02 Score=28.27 Aligned_cols=49 Identities=27% Similarity=0.206 Sum_probs=31.4
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCC------ccCCCCCcchhHHhHHHHHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT------ELDRHLDADEAIVLGASLLAA 415 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~------~i~~~~n~deava~GAa~~aa 415 (776)
+++.|+|-||.+..+.+.+.+++.+... ++......+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 4578888888776666556666655321 223333456788999998764
No 159
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=41.95 E-value=25 Score=31.74 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhC---Cceee---------ecchh-HHHHHH
Q 004058 142 LAMVLSYAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAG---MNVLS---------LVNEH-SGAALQ 204 (776)
Q Consensus 142 ~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AG---l~~~~---------li~Ep-~AAAl~ 204 (776)
++..|+...+.|+...+.++..+.+++ .....+.+.++++.++ +++-. ++..| -|+|++
T Consensus 48 i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 48 ISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 344455555556555455555555555 3344455666666665 66655 77788 777764
No 160
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=40.70 E-value=20 Score=41.64 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=16.1
Q ss_pred cEEEEEcCccceEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (776)
.++|||+|||+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~ 18 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAV 18 (536)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999999999
No 161
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=40.68 E-value=62 Score=25.05 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEcCCCCCHHHHHHHHHHHHHhCCce
Q 004058 148 YAVNLVDTHAKLAVKDFVISVPPYFGQAERKGLMQAAELAGMNV 191 (776)
Q Consensus 148 ~l~~~a~~~~~~~~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~ 191 (776)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444445554433 45679999 89999999999999998865
No 162
>PLN02377 3-ketoacyl-CoA synthase
Probab=40.63 E-value=85 Score=36.03 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEE-ecCccCcHHHHHHHHHHhCCC
Q 004058 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (776)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~L-vGG~sriP~v~~~l~~~f~~~ 394 (776)
++...++..+-+...++++|+++++++++||.|+. +.+....|.+-.+|.+.+|-.
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 34444444555667788999999999999999877 445556899999999999864
No 163
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=40.41 E-value=20 Score=36.99 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=15.4
Q ss_pred EEEEEcCccceEEEEE
Q 004058 26 VSSVDLGSEWLKVAVV 41 (776)
Q Consensus 26 vvGID~GTt~s~va~~ 41 (776)
++|||+|||+++++++
T Consensus 2 ~lGIDiGtts~K~vl~ 17 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLM 17 (248)
T ss_pred EEEEEcChhheEEEEE
Confidence 7899999999999999
No 164
>PLN02295 glycerol kinase
Probab=40.17 E-value=24 Score=40.86 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=16.2
Q ss_pred cEEEEEcCccceEEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (776)
.++|||+|||++++++++
T Consensus 1 ~vlgID~GTts~Ka~l~d 18 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYD 18 (512)
T ss_pred CEEEEecCCCceEEEEEC
Confidence 379999999999999993
No 165
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=40.15 E-value=23 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 004058 26 VSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (776)
++|||+|||++++++++
T Consensus 2 ~lgiDiGtt~~K~~l~d 18 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFE 18 (505)
T ss_pred EEEEeccccceEEEEEc
Confidence 79999999999999993
No 166
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=39.57 E-value=81 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhC
Q 004058 346 LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (776)
Q Consensus 346 ~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (776)
+++.+.+.+..+++.. .++.|+++||-+...++|+.|++...
T Consensus 247 v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 247 IFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 3344444445555433 46789999999999999999999874
No 167
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=39.45 E-value=28 Score=40.04 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=16.0
Q ss_pred cEEEEEcCccceEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (776)
.++|||+|||+++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~ 18 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVF 18 (493)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999999999
No 168
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.58 E-value=50 Score=25.90 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHhCCcee
Q 004058 162 KDFVISVPPYFGQAERKGLMQAAELAGMNVL 192 (776)
Q Consensus 162 ~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~ 192 (776)
..-.++.|+.+++.+|+.+...|...||...
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3567888999999999999999999999753
No 169
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=38.44 E-value=25 Score=40.89 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q 004058 26 VSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 26 vvGID~GTt~s~va~~~ 42 (776)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 79999999999999993
No 170
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=38.17 E-value=1.1e+02 Score=31.83 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCccEEEEecCccCcHH----HHHHHHHHhCCC-------ccCCCCCcchhHHhHHHHHHHHhcCC
Q 004058 366 DEIYAVELIGGGTRVPK----LQAKLQEYLGRT-------ELDRHLDADEAIVLGASLLAANLSDG 420 (776)
Q Consensus 366 ~~i~~V~LvGG~sriP~----v~~~l~~~f~~~-------~i~~~~n~deava~GAa~~aa~ls~~ 420 (776)
...+.|+|.|-.+|+|- |++.|++.|..- .+...... --.|.|||+.|..+++.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~-KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKA-KEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhh-hhhccchhhhhhhhcch
Confidence 45678999999999875 555566555321 11111112 24678999988777754
No 171
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=37.28 E-value=39 Score=32.48 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCcEEEEEcCccceEEEEEEeeCCCCCEEEE
Q 004058 23 QSAVSSVDLGSEWLKVAVVNLKPGQSPISIA 53 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g~~~v~ii 53 (776)
++.++|||-|++++..|++ ...+..+.++
T Consensus 1 ~m~iLGIDPgl~~tG~avi--~~~~~~~~~~ 29 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVI--EVEGRRLSYV 29 (164)
T ss_pred CCEEEEEccccCceeEEEE--EecCCeEEEE
No 172
>PLN02939 transferase, transferring glycosyl groups
Probab=36.82 E-value=3.3e+02 Score=33.88 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhccCc-cccccCCCHHHHHHHHHHHHHHHHhhhhcCCCC
Q 004058 648 SKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFETS-EDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDA 726 (776)
Q Consensus 648 s~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~-~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a 726 (776)
-+++++.++.++.+.+.-|+..+.++.-+.-|++++-++..++-.. ++..+ ..+=+.+.+-++++....-|+--...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 238 LKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSK-LSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888889999999999999999998888887321 11222 233333445555555555554321111
Q ss_pred CH-HHHHHHHHHHHHhhhHHHHH---HHhhhhchHHHHHHHHHHHHHHHH
Q 004058 727 TA-KEFQERLDVLKAIGDPVFFR---FKELTARPASVEHAQKYLGQLQQV 772 (776)
Q Consensus 727 ~~-~~~~~k~~~L~~~~~pi~~R---~~e~~~rp~~~~~~~~~l~~~~~~ 772 (776)
+. -..-.+-++|+..++.+..- .+-++.++..++.+++.+...+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (977)
T PLN02939 317 EKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER 366 (977)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 10 01112223333333333332 233345666666666666554443
No 173
>PRK00047 glpK glycerol kinase; Provisional
Probab=36.66 E-value=28 Score=40.02 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~~ 42 (776)
.+||||+|||++++++++
T Consensus 6 ~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 6 YILALDQGTTSSRAIIFD 23 (498)
T ss_pred EEEEEecCCCceEEEEEC
Confidence 589999999999999993
No 174
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.63 E-value=66 Score=37.61 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=47.1
Q ss_pred HHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCC-------CC---CHHHHHHHHHHHHHh
Q 004058 672 TAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGE-------DA---TAKEFQERLDVLKAI 741 (776)
Q Consensus 672 ~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~-------~a---~~~~~~~k~~~L~~~ 741 (776)
|-.+..+|+..|-.+|..+++ +.++....+++++.|++.... .+ ..++...+.++|.+.
T Consensus 650 r~k~~d~~~~~i~~~r~~~~~-----------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~ 718 (727)
T KOG0103|consen 650 RPKAFDELGKKIQEIRKAIES-----------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNT 718 (727)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccc
Confidence 344555566666555555432 667888999999999987421 12 348899999999999
Q ss_pred hhHHHHH
Q 004058 742 GDPVFFR 748 (776)
Q Consensus 742 ~~pi~~R 748 (776)
+.||..+
T Consensus 719 ~~~i~~~ 725 (727)
T KOG0103|consen 719 CSDIISK 725 (727)
T ss_pred ccccccc
Confidence 9998865
No 175
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=36.59 E-value=2.4e+02 Score=26.65 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHCCCC-----CCCccEEEEecCccCcHHHHHHHHHHhCCCccCCCCCcchhHHhHHHH
Q 004058 348 ERSLVPLREVLNYSGLK-----MDEIYAVELIGGGTRVPKLQAKLQEYLGRTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 348 ~~i~~~i~~~l~~a~~~-----~~~i~~V~LvGG~sriP~v~~~l~~~f~~~~i~~~~n~deava~GAa~ 412 (776)
..+...+-.++...+++ +..+...+.-=|...=--|+.+++..++-.... .+.|++=|.+.|+
T Consensus 81 ~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~mv~~~l~~~~~~--~~~d~aDAlaiA~ 148 (154)
T cd00529 81 GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHMVKRLLNLSEIP--KPDDAADALAVAI 148 (154)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHH
Confidence 34555566666666543 555555443224444457889999999864321 2334444444443
No 176
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=36.47 E-value=46 Score=33.30 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCc---eeeecchhHHHHHHhcc
Q 004058 175 AERKGLMQAAELAGMN---VLSLVNEHSGAALQYGI 207 (776)
Q Consensus 175 ~qR~~l~~Aa~~AGl~---~~~li~Ep~AAAl~y~~ 207 (776)
.-.+.+.+|....|++ ++.++|+.+|.-++.++
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3456677777777775 67899999998776543
No 177
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=36.33 E-value=7.3e+02 Score=28.69 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=37.5
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCC--ccCCCC---CcchhHHhHHHHHHHHhc
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT--ELDRHL---DADEAIVLGASLLAANLS 418 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~--~i~~~~---n~deava~GAa~~aa~ls 418 (776)
.++.|+|.||-....++++.|.+.+... ++..+. ..|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 4568999999999999999999665221 333222 568899999887655443
No 178
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=36.20 E-value=3.5e+02 Score=28.50 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=29.0
Q ss_pred HhCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEE
Q 004058 186 LAGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 186 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~ 233 (776)
..|+++ .+-|+..|+|++-..... ....+.++++.+|.| +-.+++
T Consensus 95 ~~~~pV-~ieNDa~aaalaE~~~g~-~~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRDV-RLDNDANCFALSEAWDDE-FTQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCCe-EEeccHhHHHHHHhhhcc-ccCCCcEEEEEecCc-eEEEEE
Confidence 347874 699999999987433221 122367888888865 455555
No 179
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=35.47 E-value=51 Score=22.88 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=5.9
Q ss_pred ChhhHHHHHH
Q 004058 1 MKRMLLKLLT 10 (776)
Q Consensus 1 ~~~~~~~~~~ 10 (776)
||.+.++.+.
T Consensus 1 Mk~l~~a~~l 10 (36)
T PF08194_consen 1 MKCLSLAFAL 10 (36)
T ss_pred CceeHHHHHH
Confidence 8877663333
No 180
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=35.28 E-value=1.3e+02 Score=31.68 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=25.3
Q ss_pred hCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCc
Q 004058 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGAT 226 (776)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~Ggg 226 (776)
-|+++ .+.|+..|+|++-.... ....+.++++-+|.|
T Consensus 96 ~~~pv-~v~NDa~a~a~aE~~~g--~~~~~~~~~l~ig~G 132 (291)
T PRK05082 96 TDLPT-IALNDAQAAAWAEYQAL--PDDIRNMVFITVSTG 132 (291)
T ss_pred hCCCE-EEECcHHHHHHHHHHhc--CCCCCCEEEEEECCC
Confidence 47764 69999999998743321 123457888888865
No 181
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=35.16 E-value=45 Score=29.94 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCccEEEEecCccCc--HHHHHHHHHHhCCC
Q 004058 348 ERSLVPLREVLNYSGLKMDEIYAVELIGGGTRV--PKLQAKLQEYLGRT 394 (776)
Q Consensus 348 ~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sri--P~v~~~l~~~f~~~ 394 (776)
..+...|+++|+++++.+++|+.|...|-++.. +.=.+.|.+.|+..
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 345677899999999999999999999877765 44455677888753
No 182
>PRK04123 ribulokinase; Provisional
Probab=34.80 E-value=29 Score=40.49 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=16.2
Q ss_pred cEEEEEcCccceEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (776)
.++|||+|||+++++++
T Consensus 4 ~~lgiD~GTts~Ka~l~ 20 (548)
T PRK04123 4 YVIGLDFGTDSVRALLV 20 (548)
T ss_pred EEEEEecCCCceEEEEE
Confidence 58999999999999999
No 183
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=34.77 E-value=90 Score=34.61 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.4
Q ss_pred CCCcEEEEEEecCccceeeEEEEe
Q 004058 213 NESRHVVFYDMGATTTYAALVYFS 236 (776)
Q Consensus 213 ~~~~~vlV~D~GggT~dvsv~~~~ 236 (776)
++.+.+|++|+||..+-+++|++.
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~ 95 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLG 95 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeC
Confidence 456889999999999999999875
No 184
>PRK10869 recombination and repair protein; Provisional
Probab=34.59 E-value=6.6e+02 Score=29.36 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhHHHHH----HHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHH
Q 004058 650 EALVDAEAKLEELDKKDAD----RRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDE 714 (776)
Q Consensus 650 ~~~~~~~~~~~~~~~~D~~----~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e 714 (776)
..+......+..+...|.. ....+++...||...+.+|+.+++-+ .+|++.+.+.+-|..
T Consensus 244 ~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-----~dp~~l~~ie~Rl~~ 307 (553)
T PRK10869 244 SQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLD-----LDPNRLAELEQRLSK 307 (553)
T ss_pred HHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHH
Confidence 3455666666666555533 34456677778888888888776421 245555555544433
No 185
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=34.20 E-value=6.4e+02 Score=27.39 Aligned_cols=233 Identities=14% Similarity=0.100 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCcEEEEcCCCCCHHHHHHHHHHHHHhC-C-ceeeecchhHHHHHHhccccCCCC
Q 004058 139 EELLAMVLSYAVNLVDTHAKLA---VKDFVISVPPYFGQAERKGLMQAAELAG-M-NVLSLVNEHSGAALQYGIDKDFSN 213 (776)
Q Consensus 139 eel~a~~L~~l~~~a~~~~~~~---~~~~VitVPa~f~~~qR~~l~~Aa~~AG-l-~~~~li~Ep~AAAl~y~~~~~~~~ 213 (776)
.+.-..-+..+.+.+....+.. .+-+.+|+-+...-.-+--+.-|-..|+ + +.+-=++.-.|=||.--+..+ .
T Consensus 79 ~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~--~ 156 (405)
T KOG2707|consen 79 QLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDD--S 156 (405)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccC--C
Confidence 3444555666666665554444 4457788877777666666777766664 3 234456777887776544432 2
Q ss_pred CCcEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 004058 214 ESRHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVRKS 293 (776)
Q Consensus 214 ~~~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~ 293 (776)
-.--++.+=+-||++-+.+.+ ..+.++.++..-|. -=|+.||.. .+.+.-.. +..+...-
T Consensus 157 v~FPFl~lLvSGGH~llvla~-------------~~~~~~llg~TvDi-ApGe~lDK~-----ar~Lgl~~-~~e~~~~~ 216 (405)
T KOG2707|consen 157 VRFPFLALLVSGGHTLLVLAN-------------GVGDHELLGQTVDI-APGEALDKC-----ARRLGLLG-HPEDARSG 216 (405)
T ss_pred cCCceeeEeeeCCceEEEEec-------------cccceeeeeccccc-chHHHHHHH-----HHHhcCCC-Cccchhhh
Confidence 223466666788888888873 24577788776664 345667643 22221110 00000000
Q ss_pred HHHHHHHHHHHHHHh-----hhccCCCceeEEEeecccCcc---------eEEEeeHHHHHHHH-HHHHHHHHHHHHHHH
Q 004058 294 PKAMAKLKKQVKRTK-----EILSANTMAPISVESLYVDID---------FRSSITRQKFEELC-EDLWERSLVPLREVL 358 (776)
Q Consensus 294 ~~~~~kL~~~~e~~K-----~~Ls~~~~~~i~i~~l~~~~d---------~~~~itr~efe~l~-~~~~~~i~~~i~~~l 358 (776)
.++...+...+...+ .=|-....+++++.++-.... -.....+.+|..-+ ..++..+.+-...++
T Consensus 217 g~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai 296 (405)
T KOG2707|consen 217 GKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAI 296 (405)
T ss_pred hhHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111110000 000011112222211110000 00112233333222 224444445555555
Q ss_pred HHCCCCCCCccEEEEecCccCcHHHHHHHHHHhCC
Q 004058 359 NYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLGR 393 (776)
Q Consensus 359 ~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~~ 393 (776)
+...+..+.+...++.||-++..+|+..|....+.
T Consensus 297 ~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~ 331 (405)
T KOG2707|consen 297 KSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAA 331 (405)
T ss_pred HHhhhcccCCceEEEcCCccchHHHHHHHHHHHHh
Confidence 55556677788999999999999999999987644
No 186
>PLN03170 chalcone synthase; Provisional
Probab=33.82 E-value=2e+02 Score=32.01 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CcHHHHHHHHHHhCCC
Q 004058 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (776)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~~~ 394 (776)
+...+=..+..+++|+++++++++|+.|+.+-.+. .+|.+--.|.+.+|-.
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 34445566778999999999999999988776544 6999999999999864
No 187
>PRK13317 pantothenate kinase; Provisional
Probab=33.41 E-value=37 Score=35.69 Aligned_cols=18 Identities=17% Similarity=0.280 Sum_probs=16.5
Q ss_pred CcEEEEEcCccceEEEEE
Q 004058 24 SAVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~ 41 (776)
...||||.|+|.++++++
T Consensus 2 ~~~iGIDiGstt~K~v~~ 19 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYL 19 (277)
T ss_pred CceEEEEeCcccEEEEEE
Confidence 468999999999999998
No 188
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.39 E-value=42 Score=30.91 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=14.0
Q ss_pred EEEEcCccceEEEEE
Q 004058 27 SSVDLGSEWLKVAVV 41 (776)
Q Consensus 27 vGID~GTt~s~va~~ 41 (776)
+|||||+..+.+|+.
T Consensus 1 laiD~G~kriGvA~~ 15 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQ 15 (130)
T ss_pred CeEccCCCeEEEEEE
Confidence 599999999999987
No 189
>PRK02224 chromosome segregation protein; Provisional
Probab=33.07 E-value=3e+02 Score=34.15 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHhhcc
Q 004058 646 SLSKEALVDAEAKLEELDKKDADRRRTAELKNNLEGYIYATKEKFE 691 (776)
Q Consensus 646 ~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 691 (776)
.+++.+..++..++-.+..-+.......+++..++...-.++..++
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD 190 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888887666555555555655555555555555554
No 190
>PRK03918 chromosome segregation protein; Provisional
Probab=33.03 E-value=4.1e+02 Score=32.99 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHH
Q 004058 700 STSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFF 747 (776)
Q Consensus 700 ~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~pi~~ 747 (776)
.++++.+.+.+.+.+....+.+- ....+.++.++..|+.-...+..
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~~ 701 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLKE 701 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888877777653 12344455555555544444433
No 191
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=32.78 E-value=43 Score=31.61 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.3
Q ss_pred EEEEEcCccceEEEEEEe
Q 004058 26 VSSVDLGSEWLKVAVVNL 43 (776)
Q Consensus 26 vvGID~GTt~s~va~~~~ 43 (776)
|+|||-|++++..|++..
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 699999999999999953
No 192
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=32.48 E-value=3e+02 Score=29.44 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=56.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecc---hhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEEEEeecc
Q 004058 163 DFVISVPPYFGQAERKGLMQAAELAGMNVLSLVN---EHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALVYFSAYN 239 (776)
Q Consensus 163 ~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~---Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 239 (776)
...+|-|.-=.++-|.-+.+..- --|+|..|.- .-.|-|+.|...+ ..+..-+=+|+|-|-|-+-+-.+.
T Consensus 108 ~fLlteppln~penreytaeImf-EsfnvpglyiAVqavLALaaswts~~-v~er~ltG~VidsGdgvThvipva----- 180 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMF-ESFNVPGLYIAVQAVLALAASWTSRQ-VGERFLTGIVIDSGDGVTHVIPVA----- 180 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhh-hhccCchHHHHHHHHHHHHHHHHHhh-hhhheeeeEEEecCCCeeEEEEee-----
Confidence 46788888888887777655422 2345544422 2222233343222 112223448999999977766652
Q ss_pred ccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHH
Q 004058 240 AKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFA 277 (776)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 277 (776)
. .+.+.++-....+.|++++.-+..++.
T Consensus 181 ---------E-gyVigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 181 ---------E-GYVIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred ---------c-ceEEeeeeccccccCCchhHHHHHHhh
Confidence 2 233445455668999999876665553
No 193
>PLN03172 chalcone synthase family protein; Provisional
Probab=32.42 E-value=1.3e+02 Score=33.42 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CcHHHHHHHHHHhCCC
Q 004058 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (776)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~~~ 394 (776)
+...+-..+.++++|+++++.+++|+.|+++..+. .+|.+--.|.+.+|-.
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 34445556778899999999999999998776554 6999999999999864
No 194
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=31.75 E-value=1.2e+02 Score=31.99 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCCCccEEEE-ecCccCcHHHHHHHHHHhCCC
Q 004058 349 RSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (776)
Q Consensus 349 ~i~~~i~~~l~~a~~~~~~i~~V~L-vGG~sriP~v~~~l~~~f~~~ 394 (776)
-+...|+++|+++++++.+||.++. +..++-.|.+-.+|.+.||-.
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 3466778999999999999997655 667889999999999999865
No 195
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.45 E-value=8.2e+02 Score=28.61 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHh-h-HHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhh
Q 004058 650 EALVDAEAKLEEL-D-KKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWL 719 (776)
Q Consensus 650 ~~~~~~~~~~~~~-~-~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL 719 (776)
..+..+.+.+..+ + .-........++...||...+.+++.+++- -..|++.+.+.+.+.....-.
T Consensus 251 ~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l-----~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 251 EGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDEL-----EFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHH
Confidence 4555666666654 1 112333445667777888888888877642 235666777766666555433
No 196
>PLN02669 xylulokinase
Probab=31.31 E-value=39 Score=39.53 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.2
Q ss_pred CCCcEEEEEcCccceEEEEEE
Q 004058 22 SQSAVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 22 ~~~~vvGID~GTt~s~va~~~ 42 (776)
....+||||+||+.+++++++
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCCeEEEEecccCCeEEEEEc
Confidence 345699999999999999993
No 197
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=31.17 E-value=1.5e+02 Score=31.41 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=30.0
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCC--------CccCCCCCcchhHHhHHHHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGR--------TELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~--------~~i~~~~n~deava~GAa~~a 414 (776)
+++.|+|-||.+..|.+.+.|++.+.. ..+......+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 557788877766666555666555431 123334455678999999775
No 198
>PRK09557 fructokinase; Reviewed
Probab=30.70 E-value=79 Score=33.55 Aligned_cols=48 Identities=29% Similarity=0.340 Sum_probs=29.2
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCC--------CccCCCCCcchhHHhHHHHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGR--------TELDRHLDADEAIVLGASLLA 414 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~--------~~i~~~~n~deava~GAa~~a 414 (776)
+.+.|+|-||.+..+.+...+++.+.. .++....-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 567788888777776565555544421 123333345678899998753
No 199
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.58 E-value=1.2e+02 Score=35.05 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=41.7
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEE-ecCccCcHHHHHHHHHHhCCC
Q 004058 333 SITRQKFEELCEDLWERSLVPLREVLNYSGLKMDEIYAVEL-IGGGTRVPKLQAKLQEYLGRT 394 (776)
Q Consensus 333 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~L-vGG~sriP~v~~~l~~~f~~~ 394 (776)
.-.|+|.+.+ +...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|-.
T Consensus 182 ~~~r~ea~~v-------~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 182 EEARAEAEAV-------MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 3445555544 556677889999999999999987 344445899999999999864
No 200
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.98 E-value=6.5e+02 Score=30.06 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhh
Q 004058 647 LSKEALVDAEAKLEELD-KKDADRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLY 720 (776)
Q Consensus 647 ls~~~~~~~~~~~~~~~-~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~ 720 (776)
++..++......+.... .......+..+....+|.-+-.+..+|... -.+++.+++.+.+.++..=+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~------~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 370 LSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI------PSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHH
Confidence 55666655555444444 223344444555556666666666666532 133455555555555544443
No 201
>PLN03173 chalcone synthase; Provisional
Probab=29.81 E-value=1.5e+02 Score=32.86 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CcHHHHHHHHHHhCCC
Q 004058 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLGRT 394 (776)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~~~ 394 (776)
+.-.+-..+.++++|+++++++++|+.|+.+..+. ..|.+--.|.+.+|-.
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 33444556778999999999999999998876544 5899999999999864
No 202
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=29.78 E-value=80 Score=35.22 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHH
Q 004058 339 FEELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQA 385 (776)
Q Consensus 339 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~ 385 (776)
++.+-+-+++.+..++.+.+.++++.+++|..+.++|-.+..-++.-
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllG 101 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLG 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcC
Confidence 45556667788888999999999999999999999997755544433
No 203
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=29.73 E-value=1.6e+02 Score=28.10 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=29.6
Q ss_pred hCCceeeecchhHHHHHHhccccCCCCCCcEEEEEEecCccceeeEE
Q 004058 187 AGMNVLSLVNEHSGAALQYGIDKDFSNESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 187 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dvsv~ 233 (776)
.++++ .+.|+..|+|++....... ...+.++++-+|-| .-.+++
T Consensus 91 ~~~pv-~i~Nd~~~~a~ae~~~~~~-~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 91 FGVPV-IIENDANAAALAEYWFGAA-KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HTSEE-EEEEHHHHHHHHHHHHSTT-TTTSSEEEEEESSS-EEEEEE
T ss_pred cceEE-EEecCCCcceeehhhcCcc-CCcceEEEEEeecC-CCccee
Confidence 46654 7999999999987553322 22357888888876 555555
No 204
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=29.58 E-value=45 Score=36.65 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=16.1
Q ss_pred cEEEEEcCccceEEEEE
Q 004058 25 AVSSVDLGSEWLKVAVV 41 (776)
Q Consensus 25 ~vvGID~GTt~s~va~~ 41 (776)
.++|||.|+|.++++++
T Consensus 3 y~lGIDIGSTsTKaVVm 19 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLM 19 (432)
T ss_pred eEEEEEcCchhEEEEEE
Confidence 58999999999999999
No 205
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.97 E-value=1.2e+02 Score=29.49 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=35.2
Q ss_pred hHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCC-CCHHHHHHHHHHHHHhhhHHHHH
Q 004058 681 GYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGED-ATAKEFQERLDVLKAIGDPVFFR 748 (776)
Q Consensus 681 s~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~-a~~~~~~~k~~~L~~~~~pi~~R 748 (776)
.|+-++|..|.+ .+++||+ +.++.++|+++|.+++ .+.++..+.+-.-+++...+..-
T Consensus 5 efL~~L~~~L~~-------lp~~e~~---e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLKK-------LPEEERE---EILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHc-------CCHHHHH---HHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 455555555542 4566554 4467777788775532 56777777776666666666543
No 206
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=28.68 E-value=1.5e+02 Score=31.05 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=36.4
Q ss_pred CCCCccEEEEecCccCcHHHHHHHHHHhC---CCccCCCCCcchhHHhHHHH
Q 004058 364 KMDEIYAVELIGGGTRVPKLQAKLQEYLG---RTELDRHLDADEAIVLGASL 412 (776)
Q Consensus 364 ~~~~i~~V~LvGG~sriP~v~~~l~~~f~---~~~i~~~~n~deava~GAa~ 412 (776)
-...+|.|+|+||..+...+-++|.++.. .-.+...-|-.+|.|.||..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 35689999999999999999999987653 22333344556788989863
No 207
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=28.14 E-value=90 Score=34.64 Aligned_cols=49 Identities=33% Similarity=0.493 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHH-HHHHhcccc
Q 004058 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (776)
Q Consensus 161 ~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~A-AAl~y~~~~ 209 (776)
+.++|++.|+.-+-.---.++-||.++|.+.+.-+--.-| ||++|+...
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 5689999998875555678899999999999888888888 789999754
No 208
>PF13941 MutL: MutL protein
Probab=27.89 E-value=27 Score=39.39 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHhccccCCCCCCcEEEEEEecCcccee
Q 004058 198 HSGAALQYGIDKDFSNESRHVVFYDMGATTTYA 230 (776)
Q Consensus 198 p~AAAl~y~~~~~~~~~~~~vlV~D~GggT~dv 230 (776)
||.+|+.-+...-.......+|++|+||-|||+
T Consensus 230 PTP~AVl~~~~lla~~~~g~llvVDIGGATTDV 262 (457)
T PF13941_consen 230 PTPAAVLRAAELLAEGGIGDLLVVDIGGATTDV 262 (457)
T ss_pred CCHHHHHHHHHHHHhcccCCEEEEEccCcccch
No 209
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=27.83 E-value=3.5e+02 Score=27.93 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=43.2
Q ss_pred HHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHh
Q 004058 675 LKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKE 751 (776)
Q Consensus 675 akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~pi~~R~~e 751 (776)
--..++.++-.|...|-+.+. =++-+++..+++-.||.++....+.++|. |+..=..++..|...+..
T Consensus 120 ~~~~~~~~l~~mm~qL~SKev--------LYePmKel~~kyP~wL~~n~~~l~~ed~~-rY~~Q~~~v~~I~~~fE~ 187 (248)
T PF04614_consen 120 GDEDFDKMLQGMMQQLLSKEV--------LYEPMKELRDKYPEWLEENKSKLSAEDYE-RYEKQYELVKEICAIFEK 187 (248)
T ss_dssp -----HHHHHHHHHHHTSHHH--------HHHHHHHHHHHHHHHHHHHCCCS-HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhccHhh--------hhhhHHHHHHHhHHHHHhCcCcCCHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 345667777777777755431 24678899999999999998888877755 555555566666666554
No 210
>PRK07058 acetate kinase; Provisional
Probab=27.48 E-value=5.1e+02 Score=28.75 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCcc-CcHHHHHHHHHHhC
Q 004058 343 CEDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGT-RVPKLQAKLQEYLG 392 (776)
Q Consensus 343 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~s-riP~v~~~l~~~f~ 392 (776)
++-++.++.+.|-...... ..+|.|+++||-+ ..+.|++.+.+.+.
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3445556666665554433 3699999999999 99999999998775
No 211
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=26.88 E-value=1.2e+02 Score=28.16 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=32.8
Q ss_pred HhhhhhHHHHHHhhccCccccccCCCHHHHHHHH----HHHHHHHHhhhhcC
Q 004058 676 KNNLEGYIYATKEKFETSEDYEKVSTSEERQSFV----EKLDEAQEWLYTDG 723 (776)
Q Consensus 676 kN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~----~~l~e~~~WL~~~g 723 (776)
.+.||.+++++-+--... |.++.+.+|..++- +.++.+..||...|
T Consensus 26 ~~~L~~~l~~vsdP~s~~--Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G 75 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPN--YGKYLTPEEFAALFAPSPEDVAAVKSWLKSHG 75 (143)
T ss_dssp HHHHHHHHHHHHTTTSTT--TT----HHHHHHHHS--HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCCCCcc--cccCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 467889999887755433 99999999988864 46888999999876
No 212
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=26.50 E-value=27 Score=39.14 Aligned_cols=53 Identities=26% Similarity=0.269 Sum_probs=40.3
Q ss_pred CCccEEEEecCccCcHHHHHHHHHHhCC-----C---------ccCCCCCcchhHHhHHHHHHHHhc
Q 004058 366 DEIYAVELIGGGTRVPKLQAKLQEYLGR-----T---------ELDRHLDADEAIVLGASLLAANLS 418 (776)
Q Consensus 366 ~~i~~V~LvGG~sriP~v~~~l~~~f~~-----~---------~i~~~~n~deava~GAa~~aa~ls 418 (776)
+--+.|.+|||+...|.+.+.|++..-. . +..+..||...+=.|||++|..-.
T Consensus 525 Kl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 525 KLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 3457899999999999999999987642 1 112347888888899999987643
No 213
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.09 E-value=1e+02 Score=33.80 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHHHHHHHHHHhC
Q 004058 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPKLQAKLQEYLG 392 (776)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~v~~~l~~~f~ 392 (776)
+...+.+...|+++|+++++++++|+++++.+++.++- ...+++.||
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~llg 313 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhcc
Confidence 45566677889999999999999999999999998743 223344455
No 214
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=25.78 E-value=57 Score=37.21 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.9
Q ss_pred CCcEEEEEcCccceEEEEEEeeCC
Q 004058 23 QSAVSSVDLGSEWLKVAVVNLKPG 46 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g 46 (776)
...++|||.|||.+++++++.++|
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~ 28 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNG 28 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCC
Confidence 356999999999999999964455
No 215
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=25.74 E-value=3.1e+02 Score=27.81 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCCCCCccEEEEecCccC--cHHHHHHHHHHhCC
Q 004058 350 SLVPLREVLNYSGLKMDEIYAVELIGGGTR--VPKLQAKLQEYLGR 393 (776)
Q Consensus 350 i~~~i~~~l~~a~~~~~~i~~V~LvGG~sr--iP~v~~~l~~~f~~ 393 (776)
....++++|+++++++++|+.|++.....- .|.+...|...+|-
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 456778899999999999999887665443 58888889999886
No 216
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.68 E-value=1.3e+02 Score=30.92 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=44.6
Q ss_pred EEEEEEecCccceeeEEEEeeccc--------cc------cCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhh
Q 004058 217 HVVFYDMGATTTYAALVYFSAYNA--------KV------YGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNK 282 (776)
Q Consensus 217 ~vlV~D~GggT~dvsv~~~~~~~~--------~~------~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~ 282 (776)
++|++|+|.||.|+-.+.-...+. .. .+......-+-+.+. ..||--.+.++.+|+..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G~----~MGGGp~travrrhlk~---- 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIGV----PMGGGPTTRAVRRHLKK---- 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEee----ecCCChhhHHHHHHHhc----
Confidence 589999999999998874211000 00 000001112222222 68899999999888863
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHhh
Q 004058 283 QVGNGVDVRKSPKAMAKLKKQVKRTKE 309 (776)
Q Consensus 283 ~~~~~~d~~~~~~~~~kL~~~~e~~K~ 309 (776)
+..+-...++...+...-|++++
T Consensus 74 ----G~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 74 ----GTRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred ----CCeeEechhhhhhhhcCHHHHHh
Confidence 22333334455555555566554
No 217
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.33 E-value=5.5e+02 Score=25.23 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHh
Q 004058 647 LSKEALVDAEAKLEEL 662 (776)
Q Consensus 647 ls~~~~~~~~~~~~~~ 662 (776)
+...+......++.++
T Consensus 59 Fps~~~~~~~~~~~~l 74 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKL 74 (188)
T ss_pred cChHHHHHHHHHHHHH
Confidence 4556666666655554
No 218
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=24.10 E-value=57 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=8.0
Q ss_pred ChhhH-HHHHHHHHHHHhh
Q 004058 1 MKRML-LKLLTFLSVASLL 18 (776)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~ 18 (776)
|++.| .+|+++.++++++
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s 19 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFS 19 (30)
T ss_dssp --SS-SSHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 67666 4555555555544
No 219
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.09 E-value=95 Score=33.49 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHhhhhc
Q 004058 711 KLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFFRFKELTAR 755 (776)
Q Consensus 711 ~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~pi~~R~~e~~~r 755 (776)
.|++.++||-++ +. +++.+.+++.+-++-+-||.-++.|+-.-
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~t 51 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQT 51 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 578899999855 34 99999999999999999999999987644
No 220
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.44 E-value=74 Score=23.64 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=10.1
Q ss_pred ChhhHHHHHHHHHHHH
Q 004058 1 MKRMLLKLLTFLSVAS 16 (776)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (776)
|||.+.++++++++.+
T Consensus 2 mKk~i~~i~~~l~~~~ 17 (48)
T PRK10081 2 VKKTIAAIFSVLVLST 17 (48)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777766665555544
No 221
>PLN03168 chalcone synthase; Provisional
Probab=23.00 E-value=4.3e+02 Score=29.28 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCccEEEEecCc-cCcHHHHHHHHHHhCCC
Q 004058 344 EDLWERSLVPLREVLNYSGLKMDEIYAVELIGGG-TRVPKLQAKLQEYLGRT 394 (776)
Q Consensus 344 ~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~-sriP~v~~~l~~~f~~~ 394 (776)
+...+=..+..+++|+++++++++|+.|+.+-.+ -.+|.+--.|.+.+|-.
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 4455555778899999999999999999876432 35899999999999864
No 222
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=22.96 E-value=74 Score=35.88 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=24.0
Q ss_pred eeecchhHHH-----HHHhccccCCCC-----CCcEEEEEEecCccceeeEE
Q 004058 192 LSLVNEHSGA-----ALQYGIDKDFSN-----ESRHVVFYDMGATTTYAALV 233 (776)
Q Consensus 192 ~~li~Ep~AA-----Al~y~~~~~~~~-----~~~~vlV~D~GggT~dvsv~ 233 (776)
+++|+-..=+ +++|.+.+-... ...++-++||||+++.++..
T Consensus 130 v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~ 181 (434)
T PF01150_consen 130 VRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFE 181 (434)
T ss_dssp CEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEE
T ss_pred eEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeec
Confidence 5666655444 444544431111 25789999999999999955
No 223
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=22.61 E-value=1.2e+02 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=17.0
Q ss_pred CcEEEEEcCccceEEEEEE
Q 004058 24 SAVSSVDLGSEWLKVAVVN 42 (776)
Q Consensus 24 ~~vvGID~GTt~s~va~~~ 42 (776)
|.+++||.|+-|...+++.
T Consensus 1 mii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIE 19 (143)
T ss_pred CeEEEEecCCCceeEEEEE
Confidence 4689999999999999984
No 224
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=22.53 E-value=60 Score=20.62 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=9.4
Q ss_pred ChhhHHHHHHHHHH
Q 004058 1 MKRMLLKLLTFLSV 14 (776)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (776)
||++++.+++++++
T Consensus 7 mKkil~~l~a~~~L 20 (25)
T PF08139_consen 7 MKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 48888777765543
No 225
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=5.7e+02 Score=30.71 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=55.3
Q ss_pred HHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcC-----------CCCCHHHHHHHHHHHHHh
Q 004058 673 AELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDG-----------EDATAKEFQERLDVLKAI 741 (776)
Q Consensus 673 ~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g-----------~~a~~~~~~~k~~~L~~~ 741 (776)
.++.|.-++++-..|+.=.-++ -....+..++..|.+.+.+...|+.+.- ...+.+++.+|.+.|...
T Consensus 749 ~~~l~~s~~~l~~~~~~~~~~E-~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldre 827 (902)
T KOG0104|consen 749 KNLLNRSFSFLKQARNLSTWEE-KDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDRE 827 (902)
T ss_pred HHHHHHHHHHHhccccccccch-hccchhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHH
Confidence 3444444455444443211111 2235678999999999999999998642 235677888888888888
Q ss_pred hhHHHHHHHhhhhchH
Q 004058 742 GDPVFFRFKELTARPA 757 (776)
Q Consensus 742 ~~pi~~R~~e~~~rp~ 757 (776)
..-...|+....-|++
T Consensus 828 v~~~lnK~k~~~~~~~ 843 (902)
T KOG0104|consen 828 VLYLLNKLKIRKPRKQ 843 (902)
T ss_pred HHHHHHHhhccCcccc
Confidence 8877777777665543
No 226
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=22.18 E-value=76 Score=36.17 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.3
Q ss_pred CCcEEEEEcCccceEEEEEEeeCC
Q 004058 23 QSAVSSVDLGSEWLKVAVVNLKPG 46 (776)
Q Consensus 23 ~~~vvGID~GTt~s~va~~~~~~g 46 (776)
...+|||||||..-++++++..+|
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G 25 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTG 25 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCC
Confidence 357899999999999999976555
No 227
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.84 E-value=2.6e+02 Score=28.70 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=49.1
Q ss_pred EeeHHHHHHHHHH------HHHHHHHHHHHHHHHCCCCCCCccEEEEecCccCcHH---HHHHHHHHhCCCccCCCCCcc
Q 004058 333 SITRQKFEELCED------LWERSLVPLREVLNYSGLKMDEIYAVELIGGGTRVPK---LQAKLQEYLGRTELDRHLDAD 403 (776)
Q Consensus 333 ~itr~efe~l~~~------~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG~sriP~---v~~~l~~~f~~~~i~~~~n~d 403 (776)
.=+|+||-+.+.. -++-+.-.+.--+........+.+.|+|.|.-+-+.. |++.|+...-.. + ..-|-
T Consensus 228 e~arEEli~~~~k~ekarlaldtlal~vamEIagL~~~~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k-~--~~l~~ 304 (332)
T COG4020 228 ESAREELIQRYGKGEKARLALDTLALLVAMEIAGLLMVVYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNK-V--AVLPP 304 (332)
T ss_pred hhHHHHHHHHhcCChhhhHHHHHHHHHHHHHHhhhhceecCCceEEEecccccccchhhHHHHHHHHHHHH-H--hhcCc
Confidence 4457777655432 2222222222222222234567889999996666555 777777665432 1 22344
Q ss_pred hhHHhHHHHHHHHhcCC
Q 004058 404 EAIVLGASLLAANLSDG 420 (776)
Q Consensus 404 eava~GAa~~aa~ls~~ 420 (776)
++.+.|+|+.|...+..
T Consensus 305 esaaiG~a~IA~DI~~G 321 (332)
T COG4020 305 ESAAIGLALIARDIASG 321 (332)
T ss_pred hhhhhhhHHHHHHHHcC
Confidence 57999999999877654
No 228
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=21.81 E-value=6.6e+02 Score=28.86 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=51.3
Q ss_pred cEEEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeecCCCCchHHHHHHHHHHHHHHHhhhcCCCCCCC--CC
Q 004058 216 RHVVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRWDAELGGQNMELRLVEYFADEFNKQVGNGVDVR--KS 293 (776)
Q Consensus 216 ~~vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~--~~ 293 (776)
..+.++|+|.-++-..|++.. .+.+.++... +..-.++.+.+.. -.
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~------------~~~~~~l~~~--------------------k~~vrLgegl~~~g~L~ 50 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEIT------------PGSFQVLFRE--------------------KRIVRLGEGLDATGNLS 50 (492)
T ss_pred ceEEEEEecCCeEEEEEEecc------------CCccchhhhh--------------------hhheehhcCccccCCcC
Confidence 568999999999999999643 1333322210 0000111222222 34
Q ss_pred HHHHHHHHHHHHHHhhhccCCCceeEEEeecccCcceEEEeeHHHHHHHHHH
Q 004058 294 PKAMAKLKKQVKRTKEILSANTMAPISVESLYVDIDFRSSITRQKFEELCED 345 (776)
Q Consensus 294 ~~~~~kL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~ 345 (776)
+.++.|.+.+..+.++.+..-....+.+ ....-++--.++++|-...+.
T Consensus 51 ~eai~R~~~aL~~f~e~~~~~~~~~v~~---vATsA~R~A~N~~eFl~rv~~ 99 (492)
T COG0248 51 EEAIERALSALKRFAELLDGFGAEEVRV---VATSALRDAPNGDEFLARVEK 99 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEE---ehhHHHHcCCCHHHHHHHHHH
Confidence 7788888888888888776554443332 111122223455666555544
No 229
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=21.81 E-value=85 Score=34.95 Aligned_cols=48 Identities=33% Similarity=0.521 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHH-HHHHhcccc
Q 004058 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (776)
Q Consensus 161 ~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~A-AAl~y~~~~ 209 (776)
+.++|++.|+. +..---.++-||+++|.+.+.-+--..| ||++|+...
T Consensus 151 V~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTet 199 (425)
T PRK00877 151 VKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTES 199 (425)
T ss_pred CCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCC
Confidence 56899999985 4334457888999999998888888888 799999854
No 230
>PRK13321 pantothenate kinase; Reviewed
Probab=21.59 E-value=80 Score=32.75 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEE
Q 004058 26 VSSVDLGSEWLKVAVV 41 (776)
Q Consensus 26 vvGID~GTt~s~va~~ 41 (776)
+++||+|.|+++++++
T Consensus 2 iL~IDIGnT~ik~gl~ 17 (256)
T PRK13321 2 LLLIDVGNTNIKLGVF 17 (256)
T ss_pred EEEEEECCCeEEEEEE
Confidence 6899999999999999
No 231
>PLN02192 3-ketoacyl-CoA synthase
Probab=21.24 E-value=3.1e+02 Score=31.57 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCccEEEEecC-ccCcHHHHHHHHHHhCCC
Q 004058 340 EELCEDLWERSLVPLREVLNYSGLKMDEIYAVELIGG-GTRVPKLQAKLQEYLGRT 394 (776)
Q Consensus 340 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~V~LvGG-~sriP~v~~~l~~~f~~~ 394 (776)
++..++...-+...++++|+++|+++++||.|+.... ....|.+-.+|.+.+|-.
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 3333333444667788999999999999998876532 335899999999999864
No 232
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=21.22 E-value=6.4e+02 Score=24.52 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 004058 646 SLSKEALVDAEAKLEELD 663 (776)
Q Consensus 646 ~ls~~~~~~~~~~~~~~~ 663 (776)
+||.|...++.+.+.++.
T Consensus 100 ~lT~E~R~~lvK~~k~~~ 117 (179)
T cd00520 100 PLTEERRKELVKDAKKIA 117 (179)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 599999999999887763
No 233
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.94 E-value=2.6e+02 Score=29.41 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=44.0
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--ccEEEEecCcc-CcHHHHHHHHHHhCCC---ccCCCCCcchhH
Q 004058 333 SITRQKFEELCEDLWERSLVPLREVLNYSGLKMDE--IYAVELIGGGT-RVPKLQAKLQEYLGRT---ELDRHLDADEAI 406 (776)
Q Consensus 333 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~--i~~V~LvGG~s-riP~v~~~l~~~f~~~---~i~~~~n~deav 406 (776)
.++|+-|.+.-..+- ..|..+|........+ .=.|++|||-- ....+|+-....+... +-.....|.++-
T Consensus 231 ~~~~~ifr~Ag~~Lg----~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ss 306 (336)
T KOG1794|consen 231 PLSAEIFRNAGETLG----RHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESS 306 (336)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccc
Confidence 445555555443332 3334444443322111 23599999954 4445554443322211 002334677889
Q ss_pred HhHHHHHHHHhcC
Q 004058 407 VLGASLLAANLSD 419 (776)
Q Consensus 407 a~GAa~~aa~ls~ 419 (776)
|.|||++||.+-+
T Consensus 307 AvgAA~laa~~~~ 319 (336)
T KOG1794|consen 307 AVGAAILAASLDN 319 (336)
T ss_pred hHHHHHHhhhhcc
Confidence 9999999998765
No 234
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.93 E-value=5.7e+02 Score=22.38 Aligned_cols=93 Identities=8% Similarity=0.091 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhccCccccccCCCHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhhHHHH
Q 004058 668 DRRRTAELKNNLEGYIYATKEKFETSEDYEKVSTSEERQSFVEKLDEAQEWLYTDGEDATAKEFQERLDVLKAIGDPVFF 747 (776)
Q Consensus 668 ~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~k~~~L~~~~~pi~~ 747 (776)
.......+++.+.++.-.++..|+..+ ..-...|...-.+...||... .+.++..+..|...+.-+..
T Consensus 33 l~~~~~~~~~~I~~~f~~l~~~L~~~e-------~~ll~~l~~~~~~~~~~l~~q-----~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 33 VEENAADVEAQIKAAFDELRNALNKRK-------KQLLEDLEEQKENKLKVLEQQ-----LESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 344567777778777777777776532 233445555555566777665 66778888888888877776
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHHh
Q 004058 748 RFKELTARPASVEHAQKYLGQLQQVL 773 (776)
Q Consensus 748 R~~e~~~rp~~~~~~~~~l~~~~~~~ 773 (776)
.+.+ ......+...+..+.+...++
T Consensus 101 ~l~~-~~~~e~L~~~~~i~~rl~~l~ 125 (127)
T smart00502 101 ALNS-GDPTELLLSKKLIIERLQNLL 125 (127)
T ss_pred HHHc-CCChHHHHHHHHHHHHHHHHh
Confidence 6443 344455665555555555443
No 235
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=20.77 E-value=2.9e+02 Score=25.96 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=20.2
Q ss_pred EEEEEecCccceeeEEEEeeccccccCceeccCeEEEEEeec
Q 004058 218 VVFYDMGATTTYAALVYFSAYNAKVYGKTVSVNQFQVKDVRW 259 (776)
Q Consensus 218 vlV~D~GggT~dvsv~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (776)
||-+|-|-.++-.++++. ..+.++.+.++.
T Consensus 1 ILGIDPgl~~tG~avi~~------------~~~~~~~i~~G~ 30 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE------------DGGKLRLIDYGT 30 (149)
T ss_dssp EEEEE--SSEEEEEEEEE------------ETTEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe------------eCCEEEEEEeCe
Confidence 578999999999999964 355666666543
No 236
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=20.74 E-value=1.2e+02 Score=33.20 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=32.0
Q ss_pred CccEEEEecCccCcHHHHHHHHHHhCCC-cc--CCCCCcchhHHhHHH
Q 004058 367 EIYAVELIGGGTRVPKLQAKLQEYLGRT-EL--DRHLDADEAIVLGAS 411 (776)
Q Consensus 367 ~i~~V~LvGG~sriP~v~~~l~~~f~~~-~i--~~~~n~deava~GAa 411 (776)
+++.|++.||-+..+.+.+.|++.+..- ++ ...-+--++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 5789999999999998888888877532 22 222334567777775
No 237
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=20.14 E-value=2e+02 Score=31.83 Aligned_cols=49 Identities=33% Similarity=0.513 Sum_probs=37.3
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHhCCceeeecchhHH-HHHHhcccc
Q 004058 161 VKDFVISVPPYFGQAERKGLMQAAELAGMNVLSLVNEHSG-AALQYGIDK 209 (776)
Q Consensus 161 ~~~~VitVPa~f~~~qR~~l~~Aa~~AGl~~~~li~Ep~A-AAl~y~~~~ 209 (776)
+.++|+..|+.=+..--..++-||.++|.+.+..+--.-| ||++|+...
T Consensus 123 V~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTes 172 (390)
T cd06572 123 VKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTET 172 (390)
T ss_pred CCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCcC
Confidence 5689999998532223346788999999998888888888 789999753
Done!