Query 004059
Match_columns 776
No_of_seqs 301 out of 845
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 2.1E-55 7.4E-60 463.1 21.4 240 195-443 8-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 4.5E-52 1.5E-56 443.0 24.7 247 178-426 2-284 (284)
3 3rk6_A Polyadenylate-binding p 100.0 6.6E-48 2.2E-52 399.9 15.9 206 192-420 13-234 (234)
4 2i2o_A EIF4G-like protein; pro 100.0 2E-43 7E-48 363.9 10.3 193 209-430 11-214 (224)
5 2rg8_A Programmed cell death p 100.0 3.6E-32 1.2E-36 267.8 14.4 155 604-760 2-156 (165)
6 2ion_A PDCD4, programmed cell 100.0 1.8E-31 6.3E-36 259.3 11.2 137 607-746 4-141 (152)
7 2nsz_A Programmed cell death p 100.0 1.8E-30 6.2E-35 245.9 11.5 124 607-730 2-126 (129)
8 1ug3_A EIF4GI, eukaryotic prot 99.9 2.1E-28 7.2E-33 266.7 9.7 158 604-761 3-161 (339)
9 2zu6_B Programmed cell death p 99.9 1.5E-27 5.1E-32 256.3 12.5 137 605-746 159-296 (307)
10 3eiq_C Programmed cell death p 99.9 2.3E-27 7.7E-32 259.2 10.2 149 603-753 45-193 (358)
11 2zu6_B Programmed cell death p 99.9 5.5E-27 1.9E-31 251.9 9.7 145 610-756 1-145 (307)
12 3eiq_C Programmed cell death p 99.9 1.5E-26 5E-31 252.8 13.2 135 607-746 212-347 (358)
13 3l6a_A Eukaryotic translation 99.9 3.3E-26 1.1E-30 251.4 14.7 154 606-763 6-160 (364)
14 1uw4_B UPF2, regulator of nons 99.6 1E-14 3.4E-19 151.5 18.4 217 198-447 4-244 (248)
15 1h2v_C 80 kDa nuclear CAP bind 98.8 5.2E-08 1.8E-12 116.2 16.9 196 193-426 3-227 (771)
16 4gmj_A CCR4-NOT transcription 95.7 0.13 4.3E-06 52.7 13.6 191 195-418 4-200 (229)
17 4b89_A General negative regula 95.3 0.21 7E-06 51.7 13.5 191 193-419 29-224 (249)
18 1rf8_B Eukaryotic initiation f 85.5 0.51 1.8E-05 42.0 3.2 24 63-86 60-84 (100)
19 3hxi_C Eukaryotic translation 81.2 0.51 1.7E-05 30.2 1.0 17 61-77 2-18 (21)
20 3u0r_A Apoptosis inhibitor 5; 74.0 50 0.0017 37.3 15.0 161 196-380 176-361 (507)
21 4g26_A Pentatricopeptide repea 46.0 63 0.0021 36.1 9.6 70 615-684 29-107 (501)
22 3pev_B Nucleoporin GLE1; RECA, 40.6 3.4E+02 0.012 28.4 15.9 168 197-381 43-245 (297)
23 4b8b_A General negative regula 35.3 1.9E+02 0.0064 33.4 11.1 89 609-697 445-543 (603)
24 4fu3_A Regulation of nuclear P 34.2 1.1E+02 0.0037 27.7 7.7 125 604-734 2-129 (135)
25 4g26_A Pentatricopeptide repea 31.1 70 0.0024 35.8 6.9 83 614-697 107-190 (501)
26 1yoz_A Hypothetical protein AF 28.7 31 0.001 30.7 2.6 70 626-702 21-93 (116)
27 3rjo_A Endoplasmic reticulum a 25.5 2.3E+02 0.008 30.5 9.7 135 613-754 252-390 (419)
28 1juq_A ADP-ribosylation factor 24.7 1.9E+02 0.0066 27.7 7.8 91 325-424 31-130 (171)
29 3spa_A Mtrpol, DNA-directed RN 24.7 92 0.0031 38.6 6.6 86 616-701 169-265 (1134)
30 3l39_A Putative PHOU-like phos 24.0 5.3E+02 0.018 25.4 11.5 95 613-715 40-138 (227)
31 1u84_A Hypothetical protein; s 23.3 2.7E+02 0.0092 24.2 7.6 64 196-263 7-77 (90)
32 3us6_A Histidine-containing ph 23.1 2.1E+02 0.0072 26.8 7.6 69 607-675 2-83 (153)
33 3b2a_A TON_1937, putative unch 20.0 6.2E+02 0.021 26.1 10.7 71 619-695 12-84 (265)
34 2qk2_A LP04448P; mini spindles 20.0 5.8E+02 0.02 24.4 10.9 83 629-719 75-163 (242)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=2.1e-55 Score=463.09 Aligned_cols=240 Identities=40% Similarity=0.723 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhh-hCCCCCCCCCC
Q 004059 195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE-KLPPFPSDEPG 273 (776)
Q Consensus 195 ~e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I~t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~-~lp~~~~~e~~ 273 (776)
.+++.|+|++|||||||+||+.|+.||+++++++.+.|++||++||+||+.||+||.|||+||..|+. .+|.+ +..
T Consensus 8 ~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~~ 84 (260)
T 1hu3_A 8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DKP 84 (260)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999988 46543 233
Q ss_pred CchhhHHHHHHHHHHHHHhhhhchHH-------HHhhcCChHHH--H--HHhHHHHHHHHhhhhHHHHHHHHHhcCCCCH
Q 004059 274 GKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQE--M--ERMDQERLVKLRTLGNIRLIGELLKQKMVPE 342 (776)
Q Consensus 274 gk~~~FR~~LLnrcQeeFe~~~~~~~-------ei~~~~~~e~E--~--E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e 342 (776)
+....||++||++||++|++.+.... ++.....+++. + |..+.+.+.|+|++|||+||||||+++||++
T Consensus 85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~ 164 (260)
T 1hu3_A 85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE 164 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence 45688999999999999999875321 12111111110 0 1112224578999999999999999999999
Q ss_pred HHHHHHHH-hhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHh
Q 004059 343 KIVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRA 421 (776)
Q Consensus 343 ~Im~~ci~-LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~ 421 (776)
+|||+|+. ||++ |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.+..+.++|+|+||||+||+|||+
T Consensus 165 ~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~ 238 (260)
T 1hu3_A 165 AIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL 238 (260)
T ss_dssp HHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999 9985 7999999999999999999997 445568999999999999999999999999999999999
Q ss_pred CCCCCcccccCCccHHHHHHHH
Q 004059 422 NNWVPRREEMKAKTITEIHSEA 443 (776)
Q Consensus 422 nnW~~r~~~~~pkti~eIh~ea 443 (776)
|||++++.+.+||||+|||+||
T Consensus 239 ~~W~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 239 CNWVSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp TTTCC-----------------
T ss_pred cCCCCCccccCCCcHHHHHhhC
Confidence 9999999999999999999987
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=4.5e-52 Score=443.04 Aligned_cols=247 Identities=30% Similarity=0.506 Sum_probs=195.0
Q ss_pred hhcccCCcccccC-----------C---CChHHHHHHHHHHHHhcCChhhHHHHHHHHHHccC-----CCHHHHHHHHHH
Q 004059 178 LIKAEVPWSARRG-----------N---LSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGI-----TTPDILKGVIEL 238 (776)
Q Consensus 178 l~~~e~~w~~~~~-----------~---~~e~e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I-----~t~e~Lk~VI~l 238 (776)
|++++|+|+|+.. . ..+.+++.|+|++|||||||+||+.|+.||+++++ ++.+.|++||++
T Consensus 2 l~~s~~~w~P~~~~~~~~~~~~~~~~~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~ 81 (284)
T 2vso_E 2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQ 81 (284)
T ss_dssp -----CCCCCC---------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHH
T ss_pred CCCCCCCCCChhhhcccccccCCCcccccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHH
Confidence 6788999998532 1 24578999999999999999999999999999876 688999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHhhhCCCCCCCCCC-C--chhhHHHHHHHHHHHHHhhhhch--HHHHhhcCChHHHH--
Q 004059 239 IFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG-G--KDITFKRILLNHCQEAFEGADNT--RAEIRQMTAPEQEM-- 311 (776)
Q Consensus 239 IFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~-g--k~~~FR~~LLnrcQeeFe~~~~~--~~ei~~~~~~e~E~-- 311 (776)
||+||+.||+||+|||+||..|+..+|....++.. + ....||++||++||++|++.+.. ....+ .+..+.|+
T Consensus 82 If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~-~~~~e~e~~~ 160 (284)
T 2vso_E 82 IFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNED-GTPLEPEMMS 160 (284)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC-------------CC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccc-cchhhhhhhh
Confidence 99999999999999999999999988754434321 2 23689999999999999997531 10000 00000010
Q ss_pred HHhHHHHHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH-hhhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCc------
Q 004059 312 ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDENPK------ 384 (776)
Q Consensus 312 E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e~Im~~ci~-LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k------ 384 (776)
++.+++.+.|+|++|||+||||||+++||+++|||+||+ ||+.. ...|+|++|||+|+||+|||+.||+...
T Consensus 161 ~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~-~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~ 239 (284)
T 2vso_E 161 EEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDL-TDSPSEETLESVVELLNTVGEQFETDSFRTGQAT 239 (284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 112334578999999999999999999999999999999 99731 1258999999999999999999997542
Q ss_pred --chhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhC-CCCC
Q 004059 385 --SRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRAN-NWVP 426 (776)
Q Consensus 385 --~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidLR~n-nW~~ 426 (776)
++..||.||.+|+.++.+.++|+||||||+||+|||+| ||++
T Consensus 240 ~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 240 LEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp -CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 35789999999999999999999999999999999996 9985
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-48 Score=399.86 Aligned_cols=206 Identities=23% Similarity=0.416 Sum_probs=178.4
Q ss_pred CChHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhhCCC
Q 004059 192 LSEKDRVLKTVKGILNKLT--PEKFDVLKGQLIDS---GITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPP 266 (776)
Q Consensus 192 ~~e~e~l~rkVk~ILNKLT--penFd~l~~qLl~l---~I~t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~ 266 (776)
.+..+.+.|+|++|||||| |+||+.++++|+++ .+++.+.|+.||++||+||++||+||+|||+||.+|+..++.
T Consensus 13 ~~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~ 92 (234)
T 3rk6_A 13 MGRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTI 92 (234)
T ss_dssp -----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCC
Confidence 4556889999999999999 99999999999987 799999999999999999999999999999999999998864
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhHHHHHHHHhhhhHHHHHHHHHhc--------C
Q 004059 267 FPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQ--------K 338 (776)
Q Consensus 267 ~~~~e~~gk~~~FR~~LLnrcQeeFe~~~~~~~ei~~~~~~e~E~E~~e~e~~~Krr~LGnIrFIGELfk~--------~ 338 (776)
.+ ...+||++||++||++|++.+++. + .| .+.|+|++|||+||||||++ +
T Consensus 93 ~~------~~~~Fr~lLL~rcQ~eFe~~~~~~----~---~d---------~~~k~r~lg~i~FIgELf~~l~~~~~~~~ 150 (234)
T 3rk6_A 93 SP------QSGNFRQLLLQRCRTEYEVKDQAA----K---GD---------EVTRKRFHAFVLFLGELYLNLEIKGTNGQ 150 (234)
T ss_dssp CC------TTCCHHHHHHHHHHHHHTTHHHHT----S---SC---------HHHHHHHHHHHHHHHHHHHHCCEECTTSS
T ss_pred CC------chhHHHHHHHHHHHHHHHhhHHhh----h---cc---------HHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 33 246899999999999999976421 1 11 13578999999999999998 8
Q ss_pred CCCHHHHHHHHH-hhhcCCCCCCChhhHHHHHHHHHHHhhhhhcC--CcchhhHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 004059 339 MVPEKIVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDEN--PKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHD 415 (776)
Q Consensus 339 mL~e~Im~~ci~-LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~--~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~d 415 (776)
|++++|||.|+. ||... ...|+|++|||+|+||+|||+.||+. ++++..||.||++|+.+..++++|+||||||+|
T Consensus 151 ~l~e~I~~~ci~~Ll~~l-~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~d 229 (234)
T 3rk6_A 151 VTRADILQVGLRELLNAL-FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLK 229 (234)
T ss_dssp EECCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999 88741 12489999999999999999999963 355678999999999999999999999999999
Q ss_pred HHHHH
Q 004059 416 VLDLR 420 (776)
Q Consensus 416 vidLR 420 (776)
|||||
T Consensus 230 lieLR 234 (234)
T 3rk6_A 230 LVELR 234 (234)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99998
No 4
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=2e-43 Score=363.95 Aligned_cols=193 Identities=20% Similarity=0.341 Sum_probs=159.5
Q ss_pred CChhhHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHHH
Q 004059 209 LTPEKFDVLKGQLIDSGIT--TPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNH 286 (776)
Q Consensus 209 LTpenFd~l~~qLl~l~I~--t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~gk~~~FR~~LLnr 286 (776)
.+-++|+..+.+|+...+. +...|++||++||+||++||+||+|||+||.+|....+. +. | ...||++||++
T Consensus 11 ~~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~----~~-g-~~~Fr~~LLn~ 84 (224)
T 2i2o_A 11 YKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK----QT-N-GSVFRRNLLNR 84 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH----HH-S-CCHHHHHHHHH
T ss_pred cchhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc----cc-c-chHHHHHHHHH
Confidence 3445666666666654332 344689999999999999999999999999999887532 11 2 34699999999
Q ss_pred HHHHHhhhhchHHHHhhcCChHHHHHHhHHHHHHHHhhhhHHHHHHHHHhc----CC--CC-HHHHHHHHH-hhhcCCCC
Q 004059 287 CQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQ----KM--VP-EKIVHHIVQ-LLENDGKT 358 (776)
Q Consensus 287 cQeeFe~~~~~~~ei~~~~~~e~E~E~~e~e~~~Krr~LGnIrFIGELfk~----~m--L~-e~Im~~ci~-LL~~~~~~ 358 (776)
||++|++.++ .+...|+|++|||+||||||++ +| ++ ++|||.|+. ||... .
T Consensus 85 cQ~eFe~~ee-------------------~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~--~ 143 (224)
T 2i2o_A 85 LQQEFKAREE-------------------TRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSD--A 143 (224)
T ss_dssp HHHHHHTHHH-------------------HHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHH--H
T ss_pred HHHHHHChHH-------------------HHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccC--C
Confidence 9999998521 1135689999999999999999 84 56 889999999 99752 3
Q ss_pred CCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHH-HhhCCCCChHHHHHHHHHHHHHhCCCCCcccc
Q 004059 359 CPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKE-LTTNSQLVPRLRFMIHDVLDLRANNWVPRREE 430 (776)
Q Consensus 359 ~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~-l~~~~~lssRiRFmL~dvidLR~nnW~~r~~~ 430 (776)
.|+|++|||+|+||+|||+.||+..+ ..||.||.+|++ +.+++++|+||||||+||||||++||++++..
T Consensus 144 ~p~Ee~lEcl~~LL~tvG~~Ld~~~~--~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~~ 214 (224)
T 2i2o_A 144 LKNEEEVDCLVLQLHRIGDQLEKMNV--QLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDTA 214 (224)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCchh
Confidence 47899999999999999999997543 689999999999 78888999999999999999999999998753
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=99.97 E-value=3.6e-32 Score=267.81 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=138.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHH
Q 004059 604 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRD 683 (776)
Q Consensus 604 ~~~s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~~q 683 (776)
|.+|+||++|+++++|+|||+++|++||++||+||++|.|||+||+.+|++|||+++.+||++++||++|+. ++||++|
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~ 80 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTD 80 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999977 9999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhh
Q 004059 684 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEV 760 (776)
Q Consensus 684 ~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v 760 (776)
|.+||..+++.|+|++||+|+||++||+|+||+|.+++||++||.+++.+.++..+++.+..+ -..|+...++.+|
T Consensus 81 i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~~~~~l~~a-~~ll~~~~~~~~~ 156 (165)
T 2rg8_A 81 VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKA-TVLLSMSKGGKRK 156 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHHHHHHHHHH-HHHHHTC------
T ss_pred HHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchHHHHHHHHH-HHHHhccccHHHH
Confidence 999999999999999999999999999999999999999999999999996666655555444 4666655444444
No 6
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.97 E-value=1.8e-31 Score=259.35 Aligned_cols=137 Identities=23% Similarity=0.332 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHHHH
Q 004059 607 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDIG 685 (776)
Q Consensus 607 s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~~ls~~q~~ 685 (776)
+.|+++++++++|+|||+++|++||++||+||++|+|||+||+++|+++||++ +.+|+++++||.+|+++++||.+||.
T Consensus 4 ~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 4 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 46899999999999999999999999999999999999999999999999996 78899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHH
Q 004059 686 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 746 (776)
Q Consensus 686 ~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~~~~~~~~~~~~a 746 (776)
+||.++++.|+||+||+|+||++||+|+++||.+|+|+++|+..+ ..++ .+|++|+++
T Consensus 84 ~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~--p~~~-~~rk~f~s~ 141 (152)
T 2ion_A 84 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC--PSRS-RGRKRFVSE 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC--TTC-----------
T ss_pred HHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC--CCcc-cchhhhccc
Confidence 999999999999999999999999999999999999999999984 4555 999999876
No 7
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.96 E-value=1.8e-30 Score=245.93 Aligned_cols=124 Identities=25% Similarity=0.361 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHHHH
Q 004059 607 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDIG 685 (776)
Q Consensus 607 s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~~ls~~q~~ 685 (776)
+.|+++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||++ +.+|+++++||.+|+++|+||.+||.
T Consensus 2 p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 35799999999999999999999999999999999999999999999999998 48899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHH
Q 004059 686 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEV 730 (776)
Q Consensus 686 ~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~ 730 (776)
+||.++++.|+||+||+|+||++||+|+++||.+|+|+++|+..+
T Consensus 82 ~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~ 126 (129)
T 2nsz_A 82 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhC
Confidence 999999999999999999999999999999999999999998754
No 8
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.95 E-value=2.1e-28 Score=266.68 Aligned_cols=158 Identities=25% Similarity=0.318 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHH
Q 004059 604 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRD 683 (776)
Q Consensus 604 ~~~s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~~q 683 (776)
+.+|+||++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||+++.+|+++++||++|+++++||.+|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCCh-HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhhH
Q 004059 684 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDF-IVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVL 761 (776)
Q Consensus 684 ~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~-~~v~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v~ 761 (776)
|.+||.++++.++||.||+|+||.+||.|+++++.+|++|+ .++..+++.+.+++....|+.++++.+....+-+++.
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~ 161 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVG 161 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999 7778888888999999999999999998875555553
No 9
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.94 E-value=1.5e-27 Score=256.27 Aligned_cols=137 Identities=23% Similarity=0.335 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHH
Q 004059 605 KLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRD 683 (776)
Q Consensus 605 ~~s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~~ls~~q 683 (776)
.+++++++++++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||++|+++|+||.+|
T Consensus 159 ~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 159 QQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3689999999999999999999999999999999999999999999999999997 778999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHH
Q 004059 684 IGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 746 (776)
Q Consensus 684 ~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~~~~~~~~~~~~a 746 (776)
|.+||.++++.|+|++||+|+||++||+|+++||.+|+|+++++..+ +...|++|+++
T Consensus 239 ~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~-----~~~~rkrf~se 296 (307)
T 2zu6_B 239 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 296 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS-----CCC--------
T ss_pred HHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----Ccccccccccc
Confidence 99999999999999999999999999999999999999999988765 57778998765
No 10
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.94 E-value=2.3e-27 Score=259.20 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=131.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHH
Q 004059 603 VTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTR 682 (776)
Q Consensus 603 ~~~~s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~~ 682 (776)
.|.+|++|++|+++++|+|||+++|++||+.||+||++|.||+.||+.+|++|||+++.+||++++||++|+. ++||++
T Consensus 45 ~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~ 123 (358)
T 3eiq_C 45 VLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTN 123 (358)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhc
Q 004059 683 DIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQS 753 (776)
Q Consensus 683 q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~~~~~~~~~~~~a~l~~l~~ 753 (776)
||.+||..+++.|+|++||+|+||+|||.||||||.+++||++||.++...+. +.....++..+-..|+.
T Consensus 124 ~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~-~~~~~~~l~~a~~~L~~ 193 (358)
T 3eiq_C 124 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVD-CVQARAALDKATVLLSM 193 (358)
T ss_dssp HHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---C-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhccc-chHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998765554 44455666666666653
No 11
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.93 E-value=5.5e-27 Score=251.88 Aligned_cols=145 Identities=21% Similarity=0.238 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004059 610 DLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 689 (776)
Q Consensus 610 el~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~ 689 (776)
|++|+++++|+|||+++|++||+.||+||++|.|||+||+.+|++|||+++.+||++++||++|+. ++||++||.+||.
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 79 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFD 79 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred HHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCC
Q 004059 690 LYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPA 756 (776)
Q Consensus 690 ~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~~~~~~~~~~~~a~l~~l~~~~~ 756 (776)
.+++.++|+++|+|+||++||.|+||||.|++||++||.++..+..+. ..++++..+...|+...+
T Consensus 80 ~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~-~g~~~l~~a~~~l~~~~~ 145 (307)
T 2zu6_B 80 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCV-QARAALDKATVLLSMSKG 145 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCH-HHHHHHHHHHHHHHTCC-
T ss_pred HHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccch-HHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999988876544 455666777677765543
No 12
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.93 E-value=1.5e-26 Score=252.80 Aligned_cols=135 Identities=24% Similarity=0.339 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHHHHH
Q 004059 607 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTRDIG 685 (776)
Q Consensus 607 s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~~ls~~q~~ 685 (776)
+.++++++++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||.+|+++|+||.+||.
T Consensus 212 ~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 212 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 57999999999999999999999999999999999999999999999999997 67899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHH
Q 004059 686 TGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTA 746 (776)
Q Consensus 686 ~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~~~~~~~~~~~~a 746 (776)
+||.++++.|+||+||||+||++||+|+++||.+|+|++.|+... +...|++|+++
T Consensus 292 ~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~-----p~r~rkr~~se 347 (358)
T 3eiq_C 292 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC-----PSRGRKRFVSE 347 (358)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTC-----CCC--------
T ss_pred HHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC-----cccCCcccccc
Confidence 999999999999999999999999999999999999999887644 66779999765
No 13
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=251.43 Aligned_cols=154 Identities=18% Similarity=0.290 Sum_probs=141.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC-CChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHH
Q 004059 606 LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAP-TYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDI 684 (776)
Q Consensus 606 ~s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p-~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~~q~ 684 (776)
-+.||+.|++++||+|||+++|++||++||+||++| +|||+||+.+|+++||+++.+||++++||++|+.+++||.+||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 478999999999999999999999999999999999 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCchhhHhh
Q 004059 685 GTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAV 763 (776)
Q Consensus 685 ~~Gf~~vle~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~~~~~~~~~~~~a~l~~l~~~~~g~~v~~~ 763 (776)
.+||.++++.++|+.+|+|+||.|||+|+||+|.+|++|+++|...+.. |....++..+++.+...++..++...
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~----G~~~~l~l~vl~~~~k~~G~~~l~~l 160 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES----GTHFPLFLLCLQQLAKLQDREWLTEL 160 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG----GTTTTHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc----cchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999988764 33345777889988888666665443
No 14
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.62 E-value=1e-14 Score=151.49 Aligned_cols=217 Identities=16% Similarity=0.221 Sum_probs=152.5
Q ss_pred HHHHHHHHH-hcCChhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCCCChH--HHHHHHHHHhhhCCCCCCCCCCC
Q 004059 198 VLKTVKGIL-NKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCP--MYALLCSDLNEKLPPFPSDEPGG 274 (776)
Q Consensus 198 l~rkVk~IL-NKLTpenFd~l~~qLl~l~I~t~e~Lk~VI~lIFeKAi~Ep~fs~--mYA~LC~~L~~~lp~~~~~e~~g 274 (776)
+...||.+| -.|+..+.+.++.+|..++-.+.++.+.+++. |-|+ ..-+|.. ..|.|...|....|
T Consensus 4 ~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~-~~~ky~nI~~lA~ll~~L~~~~~--------- 72 (248)
T 1uw4_B 4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINI-WNVKYNSIHCVANLLAGLVLYQE--------- 72 (248)
T ss_dssp HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCG-GGSCGGGHHHHHHHHHHHTTTCH---------
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcch-hhcccchHHHHHHHHHHHHhhCh---------
Confidence 345566666 67778899999999999988888765555544 3333 2345544 44666666666432
Q ss_pred chhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhHHHHHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH-hhh
Q 004059 275 KDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ-LLE 353 (776)
Q Consensus 275 k~~~FR~~LLnrcQeeFe~~~~~~~ei~~~~~~e~E~E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e~Im~~ci~-LL~ 353 (776)
.|--.++...-|+....- |..+ .+..+|.+++|+||||||+.+||+..+|++|+- ||.
T Consensus 73 ---~~~i~vVD~vlE~Ir~gL----------------E~n~--~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~ 131 (248)
T 1uw4_B 73 ---DVGIHVVDGVLEDIRLGM----------------EVNQ--PKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTS 131 (248)
T ss_dssp ---HHHHHHHHHHHHHHHHHH----------------HHCC--GGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred ---HHhhhhHHHHHHHHHHHH----------------hcCc--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 233344444433333211 1111 234567899999999999999999999999999 776
Q ss_pred cC--CCCCCChhh-------HHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHh----------hCCCCChHHHHHHH
Q 004059 354 ND--GKTCPAEEN-------VEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELT----------TNSQLVPRLRFMIH 414 (776)
Q Consensus 354 ~~--~~~~p~Ee~-------IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~----------~~~~lssRiRFmL~ 414 (776)
-. ....+++.+ |.++|.||.|||..++. ...+..||.|+..++... +...+|.+|+||++
T Consensus 132 fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~-~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~ 210 (248)
T 1uw4_B 132 FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDR-GSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMIS 210 (248)
T ss_dssp TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHH
Confidence 21 112245566 99999999999999986 344567999988888763 34568999999999
Q ss_pred HHHHH-HhCCCCCcccccCCccHHHHHHHHHHhc
Q 004059 415 DVLDL-RANNWVPRREEMKAKTITEIHSEAEKNL 447 (776)
Q Consensus 415 dvidL-R~nnW~~r~~~~~pkti~eIh~eae~~~ 447 (776)
|++++ |.+-|..+.-++.++.+++|.++.-..+
T Consensus 211 D~~~~lrp~~~~~~~~eEa~~~v~~le~~~~~~~ 244 (248)
T 1uw4_B 211 DTLELLRPKIKLCNSLEESIRQVQDLEREFLIKL 244 (248)
T ss_dssp HHHHHHCTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 99998 9988888887777888888877654443
No 15
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.80 E-value=5.2e-08 Score=116.25 Aligned_cols=196 Identities=15% Similarity=0.238 Sum_probs=145.9
Q ss_pred ChHHHHHHHHHHHHhcCCh-------hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhhCC
Q 004059 193 SEKDRVLKTVKGILNKLTP-------EKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKLP 265 (776)
Q Consensus 193 ~e~e~l~rkVk~ILNKLTp-------enFd~l~~qLl~l~I~t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~lp 265 (776)
++.+.+..++++++-+|+. ++++.|+..|.+ ++ ...-..+++.|+.-++..|.++.+||-|...|+.+.|
T Consensus 3 ~~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~-~l--~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p 79 (771)
T 1h2v_C 3 SDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA-DL--PNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY 79 (771)
T ss_dssp -------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH
T ss_pred CCcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH-HH--HhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh
Confidence 4567788999999999997 566666655532 22 2334457888888888999999999999999998754
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhHHHHHHHHhhhhHHHHHHHHHhcCCCCHHHH
Q 004059 266 PFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIV 345 (776)
Q Consensus 266 ~~~~~e~~gk~~~FR~~LLnrcQeeFe~~~~~~~ei~~~~~~e~E~E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e~Im 345 (776)
.|-..++.++...|....+. ..++++...++||++|...+++++..+
T Consensus 80 ------------e~G~~lv~~l~~~f~~~l~~---------------------~~~~~~k~~lrFLa~L~n~~Vv~~~~i 126 (771)
T 1h2v_C 80 ------------NFGGEFVEAMIRQLKESLKA---------------------NNYNEAVYLVRFLSDLVNCHVIAAPSM 126 (771)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHHHHTTSBCHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHHHHc---------------------cChHHHHHHHHHHHHhccCCeecHHHH
Confidence 56778999999888875321 123467789999999999999999999
Q ss_pred HHHHH-hhhcCC-CCCCC---hhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHhhCC-C-----C---------
Q 004059 346 HHIVQ-LLENDG-KTCPA---EENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNS-Q-----L--------- 405 (776)
Q Consensus 346 ~~ci~-LL~~~~-~~~p~---Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l~~~~-~-----l--------- 405 (776)
..++. ||.... ...+. +..+.|++..|..||+.|-+. .+..++.+|++++.+..+. + +
T Consensus 127 l~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~--~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~ 204 (771)
T 1h2v_C 127 VAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEK--KDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPH 204 (771)
T ss_dssp HHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSC
T ss_pred HHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCC
Confidence 99999 887421 11232 568899999999999999753 3356889999998865332 2 1
Q ss_pred --ChHHHHHHHHHHHHHhCCCCC
Q 004059 406 --VPRLRFMIHDVLDLRANNWVP 426 (776)
Q Consensus 406 --ssRiRFmL~dvidLR~nnW~~ 426 (776)
..++.+|+..|..+|+++|..
T Consensus 205 ~~~~~l~~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 205 PQEEYLDCLWAQIQKLKKDRWQE 227 (771)
T ss_dssp CCCBHHHHHHHHHHHHHHTTTCC
T ss_pred chhhHHHHHHHHHHHHHHCCCCC
Confidence 469999999999999999974
No 16
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=95.68 E-value=0.13 Score=52.71 Aligned_cols=191 Identities=19% Similarity=0.284 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCHHHHHHHHH-HHHHHHhhCCCChHHHHHHHHHHhhhCCCCCCCCCC
Q 004059 195 KDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIE-LIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPG 273 (776)
Q Consensus 195 ~e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I~t~e~Lk~VI~-lIFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e~~ 273 (776)
+|.+..+|-.|+|.||++|+++-+.+|.++ + +++...=++. +|.++|-.||+|-.+|++|...|...
T Consensus 4 de~v~dki~Fi~NNls~~N~~~k~~elk~~-l-~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~---------- 71 (229)
T 4gmj_A 4 EENIQEKIAFIFNNLSQSNMTQKVEELKET-V-KEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP---------- 71 (229)
T ss_dssp CHHHHHHHHHHHHSCCSSTHHHHHHHHHHH-S-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH----------
T ss_pred cHHhhhhheeehhcCCHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChH----------
Confidence 377899999999999999999999999885 2 2333444554 45667888999999999999887542
Q ss_pred CchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhHHHHHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH-hh
Q 004059 274 GKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ-LL 352 (776)
Q Consensus 274 gk~~~FR~~LLnrcQeeFe~~~~~~~ei~~~~~~e~E~E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e~Im~~ci~-LL 352 (776)
.|-+.+++.........-.. ++ +... -.|+ .. .+-|| .++|-|-.-.=.+-..-+-.++ ||
T Consensus 72 ----~l~~~vl~~T~~~i~~LL~s----~~-~~~~-~~eR----~~--LKNLG--~WLG~lTLarnkPI~~~~l~~K~LL 133 (229)
T 4gmj_A 72 ----EFNKMVLNETYRNIKVLLTS----DK-AAAN-FSDR----SL--LKNLG--HWLGMITLAKNKPILHTDLDVKSLL 133 (229)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTS----CC-CTTC-HHHH----HH--HHHHH--HHHHHHTGGGTCCCCTTTCCHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhh----cc-cccc-hHHH----HH--HHHHH--HHHHHHHHccCCCchhcccCHHHHH
Confidence 23334443322222211100 00 0000 0011 11 23344 5677765432111110011223 22
Q ss_pred -hcCCCCC-CChhhHHHHHHHHHHHhh--hhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 004059 353 -ENDGKTC-PAEENVEAICQFFNTIGK--QLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLD 418 (776)
Q Consensus 353 -~~~~~~~-p~Ee~IE~Lc~LL~tiGk--~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvid 418 (776)
..+.... --.--|-.+|++|..|-+ .+. + +..++-.++.-|.++...+.+.--++|=|+-+..
T Consensus 134 ~eay~~g~~rL~~viPFVcKvLe~~~~S~iFk--P-PNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk 200 (229)
T 4gmj_A 134 LEAYVKGQQELLYVVPFVAKVLESSIRSVVFR--P-PNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCK 200 (229)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS--T-TCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHCCCceEEEeehhHHHHHHhcccCCcCC--C-CChhHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 2110000 000123445555554421 221 1 2246678899999998888888999998888775
No 17
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=95.27 E-value=0.21 Score=51.66 Aligned_cols=191 Identities=16% Similarity=0.202 Sum_probs=111.0
Q ss_pred ChHHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCHHHHHHHHHH-HHHHHhhCCCChHHHHHHHHHHhhhCCCCCCCC
Q 004059 193 SEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIEL-IFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDE 271 (776)
Q Consensus 193 ~e~e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I~t~e~Lk~VI~l-IFeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~e 271 (776)
.+.+.+..+|-.|+|.||++|++.-+.+|.++ + +++...=++.- |.++|..||+|-.+|.+|+..|...
T Consensus 29 ~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~-l-~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~-------- 98 (249)
T 4b89_A 29 GAPKDVVEKVLFVLNNVTLANLNNKVDELKKS-L-TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG-------- 98 (249)
T ss_dssp CCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHH-C-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH--------
T ss_pred CcCHHHHhhhhhhhhcCChHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH--------
Confidence 34588999999999999999999999999886 3 24455556665 6668999999999999999998642
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhHHHHHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH-
Q 004059 272 PGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQ- 350 (776)
Q Consensus 272 ~~gk~~~FR~~LLnrcQeeFe~~~~~~~ei~~~~~~e~E~E~~e~e~~~Krr~LGnIrFIGELfk~~mL~e~Im~~ci~- 350 (776)
.+-+.+++.........-. .+++. .. |+ .. .+-|| .+||-|-.-.=-+-..-+-.++
T Consensus 99 ------~L~~~vl~~T~~~i~~LL~-~~~i~---~~----eR----s~--LKNLG--~WLG~iTLarNkPI~~~~ld~K~ 156 (249)
T 4b89_A 99 ------LLHQFMVNVTLRQLFVLLS-TKDEQ---AI----DK----KH--LKNLA--SWLGCITLALNKPIKHKNIAFRE 156 (249)
T ss_dssp ------HHHHHHHHHHHHHHHHHHT-BSCGG---GS----CH----HH--HHHHH--HHHHHHTGGGTCCCCTTTBCHHH
T ss_pred ------HHHHHHHHHHHHHHHHHhh-hcccC---hH----HH----HH--HHHHH--HHHhHHHHhcCCCchhcccCHHH
Confidence 2222333322111111000 00010 00 11 11 22344 5677776532111000011122
Q ss_pred h-hhcCCCCCCChhhHHHHHHHHHHHhh--hhhcCCcchhhHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 004059 351 L-LENDGKTCPAEENVEAICQFFNTIGK--QLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDL 419 (776)
Q Consensus 351 L-L~~~~~~~p~Ee~IE~Lc~LL~tiGk--~Ld~~~k~~~~md~yF~rL~~l~~~~~lssRiRFmL~dvidL 419 (776)
| +...... --+.-|-.+|++|..|-+ .+. + +..++-.++.-|.++...+.+-.-++|-|+-+..-
T Consensus 157 LL~eay~~g-~L~~vIPFVcKvLe~~k~SkiFk--P-PNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~ 224 (249)
T 4b89_A 157 MLIEAYKEN-RLEIVVPFVTKILQRASESKIFK--P-PNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKS 224 (249)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHGGGTTCSSSS--T-TCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CeEEEeeHHHHHHHhcccCCccC--C-CCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHH
Confidence 2 2211000 012346666777766632 221 1 12467788999999988888889999999988753
No 18
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1
Probab=85.50 E-value=0.51 Score=42.01 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=18.5
Q ss_pred cccccCHHHHHHHHHHh-hhcHHHH
Q 004059 63 ERVRYTREQLLQLKEVA-QLTEDIL 86 (776)
Q Consensus 63 ~~~~y~~~~l~~~~~~~-~~~~~~~ 86 (776)
-+.+|.++|||||+++| .=|+.=+
T Consensus 60 ~Kf~Ydp~FLLQF~~v~~~kpd~~w 84 (100)
T 1rf8_B 60 VKYTYGPTFLLQFKDKLNVKADAEW 84 (100)
T ss_dssp CSSCCCHHHHHHHHHHHCCCCSSHH
T ss_pred CccccChHHHHHHHHHhccCCCHHH
Confidence 36899999999999999 3343334
No 19
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=81.23 E-value=0.51 Score=30.23 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=14.9
Q ss_pred CCcccccCHHHHHHHHH
Q 004059 61 GHERVRYTREQLLQLKE 77 (776)
Q Consensus 61 ~~~~~~y~~~~l~~~~~ 77 (776)
+|-||-|.|+|||+.|.
T Consensus 2 GGTrIiYdR~fLl~~rn 18 (21)
T 3hxi_C 2 GSGRIIYDRKFLMECRN 18 (26)
T ss_pred CceEEEEeHHHHHHhcc
Confidence 57899999999999874
No 20
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=74.01 E-value=50 Score=37.35 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHhhhCCCCCCC
Q 004059 196 DRVLKTVKGILNKLTPEKFDVLKGQLIDSGI-TTPDILKGVIELIFDKAVLEPTF----CPMYALLCSDLNEKLPPFPSD 270 (776)
Q Consensus 196 e~l~rkVk~ILNKLTpenFd~l~~qLl~l~I-~t~e~Lk~VI~lIFeKAi~Ep~f----s~mYA~LC~~L~~~lp~~~~~ 270 (776)
+-+...++.+|-.+|-+.|+.++.=|-.+.+ .+....+.++.+|.++|=.+..| .....+|...+...+|-|..
T Consensus 176 ~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~- 254 (507)
T 3u0r_A 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK- 254 (507)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT-
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc-
Confidence 3477888999999999999988855545554 67788899999999998654444 57889999999999887742
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhhchHHHHhhcCChHHHHHHhHHHHHHHHhhhhHHHHHHHHHhcCC-CC--HHHHHH
Q 004059 271 EPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKM-VP--EKIVHH 347 (776)
Q Consensus 271 e~~gk~~~FR~~LLnrcQeeFe~~~~~~~ei~~~~~~e~E~E~~e~e~~~Krr~LGnIrFIGELfk~~m-L~--e~Im~~ 347 (776)
+...+.|-.++.++.--.|. .++..+.+.+ +.|-.++.++|+--.-- +. ...+-.
T Consensus 255 --~v~StkFv~y~~~kIlP~l~----------~L~e~~~~~~----------~kL~LLK~lAE~s~~~~~~e~a~~~l~~ 312 (507)
T 3u0r_A 255 --NVHSTRFVTYFCEQVLPNLG----------TLTTPVEGLD----------IQLEVLKLLAEMSSFCGDMEKLETNLRK 312 (507)
T ss_dssp --TBCCHHHHHHHHHHTGGGTT----------CCCCC--CCC----------HHHHHHHHHHHHHTTCCCCTTHHHHHHH
T ss_pred --CCChHHHHHHHHHhhccchh----------hccccccchH----------HHHHHHHHHHHHccCCCccchHHHHHHH
Confidence 22344566665443222222 2332211111 12457788899887633 33 335555
Q ss_pred HHH-hhhcCCCCCCCh----------------hhHHHHHHHHHHHhhhhh
Q 004059 348 IVQ-LLENDGKTCPAE----------------ENVEAICQFFNTIGKQLD 380 (776)
Q Consensus 348 ci~-LL~~~~~~~p~E----------------e~IE~Lc~LL~tiGk~Ld 380 (776)
+.. |+.--+ ..|+| -.||||.-.|.+.|++.-
T Consensus 313 iy~~L~~ymP-~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P 361 (507)
T 3u0r_A 313 LFDKLLEYMP-LPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLP 361 (507)
T ss_dssp HHHHHHTTSC-CCC--------------CCCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCC-CCcccccccccccccCcccchhHHHHHHHHHHHHhhhCh
Confidence 555 443211 11221 168999999999998653
No 21
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=46.02 E-value=63 Score=36.14 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhccCC--------CChHHHHHHHHHHHhCCCCCHHHH
Q 004059 615 TVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIP--------PCVEPVIQLLEFLLNKNVLTTRDI 684 (776)
Q Consensus 615 i~~ll~EY~~~~D~~EA~~clkEL~~p~~~-~e~V~~~I~~aLEk~~--------~~re~v~~LL~~L~~~~~ls~~q~ 684 (776)
+..+|+-|-..||+++|+..+.++..-... ..++..++..++-+.. ...+.+..|+..+...|+.+....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 456788899999999999999998643332 2345555555554321 124567788888888877654433
No 22
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=40.55 E-value=3.4e+02 Score=28.41 Aligned_cols=168 Identities=13% Similarity=0.169 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCC--hhhHHHHHHHHHHc-c--CCCH----HHHHHHHHHHHHHHh----hCCCChHHHHHHHHHHhhh
Q 004059 197 RVLKTVKGILNKLT--PEKFDVLKGQLIDS-G--ITTP----DILKGVIELIFDKAV----LEPTFCPMYALLCSDLNEK 263 (776)
Q Consensus 197 ~l~rkVk~ILNKLT--penFd~l~~qLl~l-~--I~t~----e~Lk~VI~lIFeKAi----~Ep~fs~mYA~LC~~L~~~ 263 (776)
.+.|+|+-.+|+|| .+.+..++.+|.++ . -.+. -.|..+++.|...|. ..|..+.-||.++..|...
T Consensus 43 ~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~ 122 (297)
T 3pev_B 43 RHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQ 122 (297)
T ss_dssp HHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHh
Confidence 47889999999998 55777888777765 1 1122 134445555554443 4688899999999999887
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHH------hhhhchHHH-HhhcC---ChHHHHHHhHHHHHHHHhhhhHHHHHHH
Q 004059 264 LPPFPSDEPGGKDITFKRILLNHCQEAF------EGADNTRAE-IRQMT---APEQEMERMDQERLVKLRTLGNIRLIGE 333 (776)
Q Consensus 264 lp~~~~~e~~gk~~~FR~~LLnrcQeeF------e~~~~~~~e-i~~~~---~~e~E~E~~e~e~~~Krr~LGnIrFIGE 333 (776)
.|. |..+|+.+....- .-... .++ ...+- ..+...|. +...=.|+-|.+++-+-
T Consensus 123 ~p~------------~~dillA~l~k~CP~~vp~~~~~~-teegr~~mG~~~~~dg~~E~---~~~y~~Rm~Gi~~lyAA 186 (297)
T 3pev_B 123 FPE------------LQELFMARLVKKCPFVIGFTCEID-TEKGRQNMGWKRNNENKWED---NTSYDERMGGILSLFAI 186 (297)
T ss_dssp STT------------HHHHHHHHHHHHCGGGGTCCCCCS-SHHHHHHTTCCBCTTSCBCC---HHHHHHHHHHHHHHHHH
T ss_pred Ccc------------HHHHHHHHHhhcCCcccccCCCcc-cHHHHHHcCCeeCCCCCccc---HHHHHHHHHHHHHHHHH
Confidence 653 4445555544431 10000 011 01110 00000111 11223488999999999
Q ss_pred HHhcCC-----------CCHHHHHHHHH-hhhcCCCCCCChhhHHHHHHHHHHHhhhhhc
Q 004059 334 LLKQKM-----------VPEKIVHHIVQ-LLENDGKTCPAEENVEAICQFFNTIGKQLDE 381 (776)
Q Consensus 334 Lfk~~m-----------L~e~Im~~ci~-LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~ 381 (776)
+..... .+..-.=..+. +|..... ..+.-...+|..+|+.+|..|-.
T Consensus 187 I~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t~~~vL~~~Le~ag~~l~~ 245 (297)
T 3pev_B 187 ITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNTHFVILGSWWDAAAVQFLQ 245 (297)
T ss_dssp HHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhcccHHHHHHHHHHHHHHHHHH
Confidence 986641 11122222333 5553210 11222455888999999998875
No 23
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=35.30 E-value=1.9e+02 Score=33.43 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHhCCCC-C-hHHHHHHHHHHHhcc-----CCCChHH--HHHHHHHHHhCCC
Q 004059 609 ADLRKKTVSLLEEYFSIR-ILDEALQCVEELRAPT-Y-HPEVVKEAIALALEK-----IPPCVEP--VIQLLEFLLNKNV 678 (776)
Q Consensus 609 eel~kki~~ll~EY~~~~-D~~EA~~clkEL~~p~-~-~~e~V~~~I~~aLEk-----~~~~re~--v~~LL~~L~~~~~ 678 (776)
.++++++++..+.+|+.. .+++++..++.++... - -.++..++|..-+|- +=..+|+ ++.|+-.|+..++
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~L 524 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 524 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcc
Confidence 579999999999999886 6999999999997533 2 356666666666653 2234454 9999999999999
Q ss_pred CCHHHHHHHHHHHhhcchh
Q 004059 679 LTTRDIGTGCLLYGSLLDD 697 (776)
Q Consensus 679 ls~~q~~~Gf~~vle~LdD 697 (776)
++.-.+.-|+.-|++.+-+
T Consensus 525 l~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 525 LRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHHHhC
Confidence 9999999999999999988
No 24
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=34.23 E-value=1.1e+02 Score=27.72 Aligned_cols=125 Identities=7% Similarity=-0.055 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCCCHH
Q 004059 604 TKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI-PPCVEPVIQLLEFLLNKNVLTTR 682 (776)
Q Consensus 604 ~~~s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~v~~LL~~L~~~~~ls~~ 682 (776)
...+++.|++++..+=. +-..+..+..-+-+- ..++.++|..+ ...|.+. ...+=.+.-|+..++...-=...
T Consensus 2 ssf~~~~l~~~L~~L~~---s~~sI~~~s~w~l~~--~~~a~~iv~~i-~~~l~~~~~~~KL~~LYLindIl~ns~~~~~ 75 (135)
T 4fu3_A 2 SSFSESALEKKLSELSN---SQQSVQTLSLWLIHH--RKHAGPIVSVW-HRELRKAKSNRKLTFLYLANDVIQNSKRKGP 75 (135)
T ss_dssp -CCCHHHHHHHHHHCCS---STTHHHHHHHHHHHT--GGGHHHHHHHH-HHHHHHSCTTTHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCHHHHHHHHHHccc---cHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHhcccchhHHHHHHHHHHHHHHHhcCH
Confidence 35678888888776510 111222332222221 12345555544 4455554 44444555666655421101124
Q ss_pred HHHHHHHHHhhcc-hhhh-cCCCchhHHHHHHHHHHHHcCCCChHHHHHHHhhh
Q 004059 683 DIGTGCLLYGSLL-DDIG-IDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKV 734 (776)
Q Consensus 683 q~~~Gf~~vle~L-dDl~-iDiP~A~~~La~~iaraI~d~~l~~~~v~~~~~~~ 734 (776)
+|...|..++..+ .++. ..-+....-+.+++.-.-..++++..+|..+-..+
T Consensus 76 ~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l 129 (135)
T 4fu3_A 76 EFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSM 129 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 6777777653222 1110 01144555666677666677777777776665544
No 25
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=31.08 E-value=70 Score=35.78 Aligned_cols=83 Identities=6% Similarity=-0.060 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 004059 614 KTVSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYG 692 (776)
Q Consensus 614 ki~~ll~EY~~~~D~~EA~~clkEL~~p~~~-~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vl 692 (776)
....+|.-|...|++++|...++++..-... ..++...+..++=+. .+.+.+.+|+..+...|+.+.......+...+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999998654433 344555555565544 34788899999999998887766666665554
Q ss_pred hcchh
Q 004059 693 SLLDD 697 (776)
Q Consensus 693 e~LdD 697 (776)
....+
T Consensus 186 ~~~g~ 190 (501)
T 4g26_A 186 MDTKN 190 (501)
T ss_dssp HHTTC
T ss_pred hhCCC
Confidence 44443
No 26
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=28.75 E-value=31 Score=30.68 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHhCCCCChHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcchhhhcCC
Q 004059 626 RILDEALQCVEELRAPTYHPEVVKEAIALALE---KIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDL 702 (776)
Q Consensus 626 ~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLE---k~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vle~LdDl~iDi 702 (776)
.+++|| ++|-.|....++.+.=++..++ .+..+.|-+-.-|..| ++.--+|+..-|.++++.|+|..--|
T Consensus 21 m~VeeA----k~L~D~eni~EmFRsD~E~I~~~f~~G~~t~EEa~~nl~~L---K~YavSQL~~Hy~ri~~~l~d~e~Ki 93 (116)
T 1yoz_A 21 KSVEEA----DKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLL---KTYVVSQLSIHFERLKEFAESKGFKI 93 (116)
T ss_dssp SCGGGH----HHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH---HHHHHHTHHHHHHHHHHHHHTTC---
T ss_pred hhHHHH----HHccCHHHHHHHHHhhHHHHHHHHHcCCccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777 7777776666666555444444 3566777776666655 34566789999999999999999777
No 27
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=25.53 E-value=2.3e+02 Score=30.54 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004059 613 KKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIP-PCVEPVIQLLEFLLNKNVLTTRDIGTGCLLY 691 (776)
Q Consensus 613 kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~~-~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~v 691 (776)
...+.+++.|....+.+|-..++..|.+ ...+.++...+..+|+.+. ...+ +..++..+.. +-...+ .++.=+
T Consensus 252 ~~~~~l~~~y~~s~~~~ek~~ll~aL~~-s~d~~ll~~~L~~~l~~~~ir~qD-~~~~~~~v~~-n~~g~~---~aw~fl 325 (419)
T 3rjo_A 252 EGWDFLYSKYQFSLSSTEKSQIEFALCR-TQNKEKLQWLLDESFKGDKIKTQE-FPQILTLIGR-NPVGYP---LAWQFL 325 (419)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTSSSCGGG-HHHHHHHHHT-STTTHH---HHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhc-CcchHH---HHHHHH
Confidence 3467889999999999999999999976 4568899999999998653 3333 3445555543 433332 223333
Q ss_pred hhcchhhhcCCCchhHHHHHHHHHHHHcCCCChHH---HHHHHhhhcchhHHHHHHHHHHHHHhcC
Q 004059 692 GSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIV---LKEVLKKVEDNMFRRSIFTAAMKSIQSS 754 (776)
Q Consensus 692 le~LdDl~iDiP~A~~~La~~iaraI~d~~l~~~~---v~~~~~~~~~~~~~~~~~~a~l~~l~~~ 754 (776)
.+..+.|.--.+.....++.+|.- +.....+... |+..++.....+...+.+..++..++.|
T Consensus 326 ~~nw~~l~~~~~~~~~~~~~~i~~-~~~~~~t~~~l~e~~~Ff~~~~~~~~~~~~~~qale~i~~n 390 (419)
T 3rjo_A 326 RKNWNKLVQKFELGSSSIAHMVMG-TTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEEN 390 (419)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH-TTTTCCSHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCchhHHHHHHH-HhhcCCCHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 444444443333333445555533 3344455544 3444444333332234566777777665
No 28
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=24.67 E-value=1.9e+02 Score=27.67 Aligned_cols=91 Identities=9% Similarity=0.168 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHH-hhhcCCCCCCChh----hHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHH
Q 004059 325 LGNIRLIGELLKQKMVPEKIVHHIVQ-LLENDGKTCPAEE----NVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKEL 399 (776)
Q Consensus 325 LGnIrFIGELfk~~mL~e~Im~~ci~-LL~~~~~~~p~Ee----~IE~Lc~LL~tiGk~Ld~~~k~~~~md~yF~rL~~l 399 (776)
.+.+.-|+++.+.+-...+....+|+ .|.+ .+.. .+..|=.+++.||+.+...-..+.+|+ .|..+
T Consensus 31 w~~ileicD~I~~~~~~~k~A~ral~krl~~-----~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~----eL~kl 101 (171)
T 1juq_A 31 WEYIIGFCDQINKELEGPQIAVRLLAHKIQS-----PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN----ELIKV 101 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH----HHHHH
Confidence 35566778888777555555445555 5543 2333 333344455566887763222334444 45555
Q ss_pred hhC----CCCChHHHHHHHHHHHHHhCCC
Q 004059 400 TTN----SQLVPRLRFMIHDVLDLRANNW 424 (776)
Q Consensus 400 ~~~----~~lssRiRFmL~dvidLR~nnW 424 (776)
+.. +..+..||-.|..+|.-.....
T Consensus 102 ~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 102 VSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 542 3578999999999999876443
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=24.66 E-value=92 Score=38.62 Aligned_cols=86 Identities=8% Similarity=0.032 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC----------CCHHHH
Q 004059 616 VSLLEEYFSIRILDEALQCVEELRAPTYH-PEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNV----------LTTRDI 684 (776)
Q Consensus 616 ~~ll~EY~~~~D~~EA~~clkEL~~p~~~-~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~----------ls~~q~ 684 (776)
+.+|.=|...|.++||...+++|...... ..+.+.+|..+|=+.....+.+.+||..+...|+ |+.++-
T Consensus 169 NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 45666677777777777777777554443 3455666666776654445677789998888775 333343
Q ss_pred HHHHHHHhhcchhhhcC
Q 004059 685 GTGCLLYGSLLDDIGID 701 (776)
Q Consensus 685 ~~Gf~~vle~LdDl~iD 701 (776)
..-+..+-..-+++..+
T Consensus 249 ~~vL~~Vrkv~P~f~p~ 265 (1134)
T 3spa_A 249 ATVLKAVHKVKPTFSLP 265 (1134)
T ss_dssp HHHHHHHGGGCCCCCCC
T ss_pred HHHHHHHHHhCcccCCC
Confidence 33444454555555554
No 30
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=23.95 E-value=5.3e+02 Score=25.40 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccC---CCChHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004059 613 KKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKI---PPCVEPVIQLLEFLLNKNVLTTRDIGTGCL 689 (776)
Q Consensus 613 kki~~ll~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~---~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~ 689 (776)
...-.+|.+++..+|.+++...++++..-.....-+..-|...|-++ +-+|+-+..|+..|- ++..+++
T Consensus 40 ~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~fitP~dReDI~~L~~~lD--------dI~D~ie 111 (227)
T 3l39_A 40 SASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLASCMD--------DVIDGIN 111 (227)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH--------HHHHHHH
Confidence 34566799999887887777777776432333444555555566664 778999998888764 4555555
Q ss_pred HHhhcchhhhcCC-CchhHHHHHHHHH
Q 004059 690 LYGSLLDDIGIDL-PKAPNNFGEMVGK 715 (776)
Q Consensus 690 ~vle~LdDl~iDi-P~A~~~La~~iar 715 (776)
.+...+.=..++. |....-++.++..
T Consensus 112 ~~a~~l~l~~~~~~~~~~~~l~~~i~~ 138 (227)
T 3l39_A 112 SSAKRIVIYNPRPISESGKELSRLIHE 138 (227)
T ss_dssp HHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 5444444333333 3233334444433
No 31
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=23.26 E-value=2.7e+02 Score=24.23 Aligned_cols=64 Identities=16% Similarity=0.313 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCC-----hhhHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhh
Q 004059 196 DRVLKTVKGILNKLT-----PEKFDVLKGQLIDS--GITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEK 263 (776)
Q Consensus 196 e~l~rkVk~ILNKLT-----penFd~l~~qLl~l--~I~t~e~Lk~VI~lIFeKAi~Ep~fs~mYA~LC~~L~~~ 263 (776)
....++|.-+||.-. ++.+++-+..++.. ..++...|-.+|..||+.+-++-- -+.+ |..|..+
T Consensus 7 ~~~~~~~~~iI~~WDPf~~g~D~Y~~Ei~~Iv~av~~~d~~~~LA~~Iq~If~~SFee~~---p~e~-c~~iA~k 77 (90)
T 1u84_A 7 QQLNRLLLEWIGAWDPFGLGKDAYDVEAASVLQAVYETEDARTLAARIQSIYEFAFDEPI---PFPH-CLKLARR 77 (90)
T ss_dssp CHHHHHHHHHHHHHCTTSSCGGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSSCC---CHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCCCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---ChHH-HHHHHHH
Confidence 456777778888655 68888888888873 467899999999999999985543 2233 6555553
No 32
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.07 E-value=2.1e+02 Score=26.82 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCC---CCChHHHHHHHHHH----------HhccCCCChHHHHHHHHHH
Q 004059 607 NLADLRKKTVSLLEEYFSIRILDEALQCVEELRA---PTYHPEVVKEAIAL----------ALEKIPPCVEPVIQLLEFL 673 (776)
Q Consensus 607 s~eel~kki~~ll~EY~~~~D~~EA~~clkEL~~---p~~~~e~V~~~I~~----------aLEk~~~~re~v~~LL~~L 673 (776)
....+.+.+..++.-.|..+-++|....|++|.. |.|..++|...+.. +++.++.+.+.+..+.+.|
T Consensus 2 ~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~L 81 (153)
T 3us6_A 2 EVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQF 81 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 3456788899999999999988899999999953 45555555544443 3444333566666666666
Q ss_pred Hh
Q 004059 674 LN 675 (776)
Q Consensus 674 ~~ 675 (776)
..
T Consensus 82 KG 83 (153)
T 3us6_A 82 KG 83 (153)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 33
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=20.02 E-value=6.2e+02 Score=26.07 Aligned_cols=71 Identities=15% Similarity=0.007 Sum_probs=48.8
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhhcc
Q 004059 619 LEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNK--NVLTTRDIGTGCLLYGSLL 695 (776)
Q Consensus 619 l~EY~~~~D~~EA~~clkEL~~p~~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~--~~ls~~q~~~Gf~~vle~L 695 (776)
|.||+-+=++.+|+..++.- .+.+..++...=|+.+..+..+...|..+.+. +.+....+.+.|..+++.+
T Consensus 12 lre~L~sWkiK~a~ela~~~------e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll 84 (265)
T 3b2a_A 12 LRELVLSWQILDAVSLALED------KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL 84 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHC------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHhc------hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 56788888888888777763 23444444444444445566677777777776 7788888888888887654
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=20.02 E-value=5.8e+02 Score=24.43 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCC---CC---ChHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcchhhhcCC
Q 004059 629 DEALQCVEELRA---PT---YHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDL 702 (776)
Q Consensus 629 ~EA~~clkEL~~---p~---~~~e~V~~~I~~aLEk~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vle~LdDl~iDi 702 (776)
..|..|+..|-. +. |+..++..++...-|++...|+.+...|..++.. ++.+++...+.. .|.+ .-
T Consensus 75 ~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~---~l~~---~~ 146 (242)
T 2qk2_A 75 AMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVE---SLSN---KN 146 (242)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHH---HTTC---SC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH---HHcC---CC
Confidence 477788887632 22 3345666666665566677889999999999874 455555555444 4443 35
Q ss_pred CchhHHHHHHHHHHHHc
Q 004059 703 PKAPNNFGEMVGKLVVA 719 (776)
Q Consensus 703 P~A~~~La~~iaraI~d 719 (776)
|.+......+++.++..
T Consensus 147 ~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 147 PSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88999999999998755
Done!