Your job contains 1 sequence.
>004060
MPPRTVKRGAAGPRRTARATRGTAKQQAEVAEETVKVEEVPVKEEEKAVVEDDNKPVVVE
DEPKSDVNGSVPATQKEDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHE
DVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAE
EHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF
AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHY
GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD
SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV
TFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRAT
RGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSMTARARPMPPPPPRSYD
RRAPVPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMP
RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG
VRHSRARLDYDLGGGAPQYGDAYGDRMGRSNLGYGGSRSSISSQDSHGLYSSRQGMGYGG
GSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMGSGGSGSYY
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004060
(776 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 1154 1.1e-177 4
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 330 1.8e-27 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 330 1.8e-27 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 331 1.8e-27 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 331 2.8e-27 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 331 2.8e-27 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 331 2.8e-27 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 331 3.0e-27 1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 330 3.6e-27 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 317 8.4e-26 2
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 298 4.6e-25 2
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 304 1.1e-24 2
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 301 2.0e-24 2
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 300 2.6e-24 2
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 283 3.4e-24 1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 289 7.0e-24 2
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 289 9.8e-24 2
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 289 9.8e-24 2
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 289 9.8e-24 2
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 289 1.9e-23 2
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 293 9.4e-23 2
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 293 1.4e-22 2
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 278 2.9e-22 2
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 276 6.7e-21 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 271 1.2e-20 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 276 1.6e-20 2
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 262 6.8e-20 2
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 264 1.0e-19 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 265 1.0e-19 2
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 256 1.4e-19 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 262 1.6e-19 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 262 1.6e-19 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 261 2.1e-19 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 264 2.6e-19 2
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 258 4.6e-19 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 256 6.4e-19 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 256 7.6e-19 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 255 9.8e-19 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 255 9.8e-19 1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 254 1.3e-18 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 252 2.1e-18 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 252 2.1e-18 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 253 2.3e-18 2
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 253 2.5e-18 2
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 256 3.5e-18 2
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 239 1.4e-17 2
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 240 2.5e-17 1
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 238 2.6e-17 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 240 2.7e-17 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 240 2.7e-17 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 241 2.7e-17 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 240 3.5e-17 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 238 4.1e-17 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 240 4.5e-17 2
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 240 5.7e-17 2
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 240 9.2e-17 2
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 237 9.7e-17 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 236 2.1e-16 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 234 2.1e-16 1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 224 1.9e-15 1
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 216 4.3e-15 2
UNIPROTKB|F1SA35 - symbol:LOC100737421 "Uncharacterized p... 213 1.2e-14 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 216 2.3e-14 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 201 4.4e-14 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 215 6.3e-14 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 215 6.8e-14 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 214 8.1e-14 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 212 8.3e-14 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 211 8.4e-14 1
UNIPROTKB|F1SCL3 - symbol:LOC100522980 "Uncharacterized p... 179 9.7e-14 3
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 211 1.6e-13 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 211 1.9e-13 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 206 3.1e-13 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 195 3.6e-13 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 206 4.6e-13 2
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 196 4.7e-13 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 180 5.4e-13 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 180 5.4e-13 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 196 7.6e-13 2
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 202 8.1e-13 2
UNIPROTKB|F1LZZ2 - symbol:F1LZZ2 "Uncharacterized protein... 186 8.5e-13 2
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 178 8.9e-13 1
UNIPROTKB|F1SCM6 - symbol:LOC100522063 "Uncharacterized p... 171 9.2e-13 3
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 198 1.0e-12 2
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 196 1.0e-12 2
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 196 1.0e-12 2
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 196 1.0e-12 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 196 1.0e-12 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 196 1.0e-12 2
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 196 1.1e-12 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 200 1.1e-12 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 200 1.1e-12 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 195 1.1e-12 2
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 177 1.1e-12 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 195 1.2e-12 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 200 1.3e-12 1
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 194 1.4e-12 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 196 1.6e-12 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 194 1.8e-12 2
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 147 1.9e-12 2
WARNING: Descriptions of 606 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 1154 (411.3 bits), Expect = 1.1e-177, Sum P(4) = 1.1e-177
Identities = 223/334 (66%), Positives = 267/334 (79%)
Query: 177 VDAEEHDHHEMFQERRKRKEFEVFXXXXXXXXXXXXXXXXFSQVGEVTEVRLMMNPQTKK 236
VD EE +HH++ ERRKRKEFE+F F VGEVTEVR++ NPQTKK
Sbjct: 194 VDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKK 253
Query: 237 NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEK 296
+KG AFLRFATVEQA++AV ELK+P+INGK+CGVT SQD+DTLF+GNICK WT EAL+EK
Sbjct: 254 SKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREK 313
Query: 297 LKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356
LKHYGV+N++D+TLVEDSNN MNRG+AFLEFSSRSDAMDA KRL K+DV+FGV++PAKV
Sbjct: 314 LKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKV 373
Query: 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKD 416
SF DSF+D DEIMAQVKT+F+DGL SW+E+RVR+LLK YG++ K+ELARNMPSA+RKD
Sbjct: 374 SFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKD 433
Query: 417 FGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQR-GKGKHASRGDFXXXXX 475
FGFVTFDTH+AAV+CAK INN+ELGEG++KAKVRARLSRPLQ+ GKG+ +SR D
Sbjct: 434 FGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGRQSSRSDQRSRHG 493
Query: 476 XXXXXXXXWGLPSPRSLPG-RSARGIGSRLPPAS 508
+ PRSL RSARG GSR P +S
Sbjct: 494 AGRSGRSSFARLPPRSLASSRSARGAGSRAPSSS 527
Score = 502 (181.8 bits), Expect = 1.1e-177, Sum P(4) = 1.1e-177
Identities = 96/149 (64%), Positives = 114/149 (76%)
Query: 545 VPSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRR-PYRDEYTSRGSGYPDMPRST 603
VP YPK LKR+Y RRDE+PPPRSR V Y SR+ P+R YRD+Y RGSGY D+PRS+
Sbjct: 583 VPLYPKASLKRDYDRRDELPPPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSDLPRSS 642
Query: 604 SRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPGVRH 663
SR RRP+VDD Y+ RFERPP SY EGR R YE + GSKRPY+ +DD+PPRYAD VRH
Sbjct: 643 SRSEIRRPFVDDLYSPRFERPP-SYSEGRPRAYEPLPGSKRPYAALDDLPPRYADVDVRH 701
Query: 664 SRARLDYDLGGGAPQYGDAYGDRMGRSNL 692
SR RLDYD+G QYG++YGDR+ RS+L
Sbjct: 702 SRPRLDYDVGPS--QYGESYGDRIPRSSL 728
Score = 77 (32.2 bits), Expect = 5.5e-133, Sum P(4) = 5.5e-133
Identities = 38/123 (30%), Positives = 52/123 (42%)
Query: 549 PKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAA 608
P+P L R +PPP P+ +R P P R Y R P +P + +
Sbjct: 539 PRPPLPPP-ARARPLPPPARARPMPPPARARPLPPPARS-YDRR----PPVPLYP-KASL 591
Query: 609 RRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPR---YADPGVRHSR 665
+R Y D +R E PPP R A Y + +R S DD PPR Y+D SR
Sbjct: 592 KRDY--D---RRDELPPPRSRP--AVSYSSRLSPERHLSYRDDYPPRGSGYSDLPRSSSR 644
Query: 666 ARL 668
+ +
Sbjct: 645 SEI 647
Score = 72 (30.4 bits), Expect = 3.9e-56, Sum P(3) = 3.9e-56
Identities = 33/132 (25%), Positives = 60/132 (45%)
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
VE S++E +N G E S SDA++A + + D + P V + ID +
Sbjct: 30 VESSHDESVNIG----ELSG-SDALEAKEVTPEVDKTVEEENPLDVPKSSDSIDDSEA-- 82
Query: 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430
VD +P+ E V E + ++G+ +++L N P + +++G F+ +
Sbjct: 83 --AANPHVD-VPSK-KETEVEESVDDFGKDERLDLDDNEPEYEAEEYGGEEFEERELGQE 138
Query: 431 CAKSINNAELGE 442
+ +N E GE
Sbjct: 139 DHELVN--EEGE 148
Score = 69 (29.3 bits), Expect = 1.1e-177, Sum P(4) = 1.1e-177
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDER 92
+ E ++ + VP+ +KE EV+ESVD++ KDER
Sbjct: 79 DSEAAANPHVDVPS-KKETEVEESVDDFGKDER 110
Score = 68 (29.0 bits), Expect = 4.9e-132, Sum P(4) = 4.9e-132
Identities = 24/73 (32%), Positives = 29/73 (39%)
Query: 549 PKPGLKREYGRRDEVPPP-------RSRAPVDYGSRVVPDR--RPYRDEYTSRGSGYPDM 599
P PG KR Y D++PP SR +DY V P + Y D GY
Sbjct: 676 PLPGSKRPYAALDDLPPRYADVDVRHSRPRLDYD--VGPSQYGESYGDRIPRSSLGYGSS 733
Query: 600 PRSTSRGAARRPY 612
S S +R PY
Sbjct: 734 RNSMSNHDSRGPY 746
Score = 59 (25.8 bits), Expect = 4.3e-131, Sum P(4) = 4.3e-131
Identities = 41/140 (29%), Positives = 52/140 (37%)
Query: 565 PPRSRAPVDYGSRVVPDRRPYRDEYTSRGS-GY---PDMP-----RSTSRGAARRPYVDD 615
PPRS A +R R P + GS G P +P R A RP
Sbjct: 506 PPRSLAS-SRSARGAGSRAPSSSAKRASGSRGRRPRPPLPPPARARPLPPPARARPMPPP 564
Query: 616 GYAQRFERPPPSY-REGRARDYETVSGSKRPYSVVDDVPPRYADPGVRHS-RARLDYDLG 673
A+ P SY R Y S KR Y D++PP + P V +S R + L
Sbjct: 565 ARARPLPPPARSYDRRPPVPLYPKAS-LKRDYDRRDELPPPRSRPAVSYSSRLSPERHLS 623
Query: 674 --GGAPQYGDAYGDRMGRSN 691
P G Y D + RS+
Sbjct: 624 YRDDYPPRGSGYSD-LPRSS 642
Score = 50 (22.7 bits), Expect = 1.1e-177, Sum P(4) = 1.1e-177
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 741 MPRGSDVGGSSYSSMY 756
+PR D GGSSYSS+Y
Sbjct: 776 LPR-RDGGGSSYSSIY 790
Score = 43 (20.2 bits), Expect = 6.2e-177, Sum P(4) = 6.2e-177
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 744 GSDVGGSSYSSMY 756
GSDVGG YSS Y
Sbjct: 761 GSDVGGM-YSSSY 772
Score = 38 (18.4 bits), Expect = 2.1e-176, Sum P(4) = 2.1e-176
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 743 RGSDVGGSSYS 753
+G D GG SYS
Sbjct: 750 QGMDYGGGSYS 760
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 330 (121.2 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 92 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 151
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 152 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 210
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 211 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSF 268
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 269 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 317
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 318 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 368
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 330 (121.2 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 92 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 151
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 152 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 210
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 211 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSF 268
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 269 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 317
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 318 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 368
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 331 (121.6 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 182 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 242 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 301 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 359 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 407
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 408 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 458
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 331 (121.6 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 181 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 240
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 241 NNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 299
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 300 QARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 357
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 358 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 406
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 407 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 457
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 331 (121.6 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 182 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 242 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 301 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 359 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 407
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 408 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 458
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 331 (121.6 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 186 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 245
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 246 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 304
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 305 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 362
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 363 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 411
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 412 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 462
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 331 (121.6 bits), Expect = 3.0e-27, P = 3.0e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 197 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 256
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 257 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 315
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 316 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 373
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 374 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 422
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 423 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 473
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 330 (121.2 bits), Expect = 3.6e-27, P = 3.6e-27
Identities = 94/292 (32%), Positives = 146/292 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 182 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 242 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 301 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSF 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ FD D AV + +N +L EG+N V A+
Sbjct: 359 SQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIVFAK-- 407
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR RG G PP
Sbjct: 408 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRG-GYGYPP 458
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 317 (116.6 bits), Expect = 8.4e-26, Sum P(2) = 8.4e-26
Identities = 94/292 (32%), Positives = 142/292 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + N+G+AFL F T E A++AV N I GK GV S
Sbjct: 246 FEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEAAQEAVKLCNNHEIRPGKHIGVCISVA 305
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 306 NNRLFVGSIPKSKTKEQIVEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 364
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L S E+ + +
Sbjct: 365 QARRRLMSGKVKVWG--NLVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAF 422
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G + +++ K KD+ FV F+ D AV +N EL EG++ V A+
Sbjct: 423 GQFGNLERVK--------KLKDYAFVHFNDRDGAVKALTEMNGKEL-EGEHIEIVFAK-- 471
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P Q+ K + A R +P P GR A G PP
Sbjct: 472 PPDQKRKERKAQRQAAKTQMYDDYYYYGPPQMPPPARGRGRGASRGGYSYPP 523
Score = 45 (20.9 bits), Expect = 8.4e-26, Sum P(2) = 8.4e-26
Identities = 26/90 (28%), Positives = 31/90 (34%)
Query: 546 PSYPKPGLKREYG--RRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRST 603
P P P R G R PP DY D YR Y GY D ++
Sbjct: 501 PQMPPPARGRGRGASRGGYSYPPDYYGYEDYYDYYGYDYHNYRGGYDDPYFGYDDF-QAP 559
Query: 604 SRGAARRPYVDDGYAQRFERPPPSYREGRA 633
+RG R G + R + R GRA
Sbjct: 560 ARGRGGRGSARGGTSPARGRGASAPR-GRA 588
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 298 (110.0 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 78/250 (31%), Positives = 137/250 (54%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++GE+ EVRLM + + +KG+AF+ F T + A++A+ EL + GK + S+ +
Sbjct: 138 EIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNR 197
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+GNI K WT++ ++ ++ G VE++ L++D N NRGFAF+ + + + A D +
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVG-PGVENIELIKDPTNTTRNRGFAFVLYYNNACA-D-Y 254
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMA-QVKTVFVDGLPASWDEDRVRELLKN 396
R + D F ++ A V++AD P A QVK ++V +P + ++++EL +
Sbjct: 255 SRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQR 314
Query: 397 YGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+GE+TKI P K ++DFGFV + +A+ K E+ N + L+
Sbjct: 315 HGEVTKIVT----PPGKGGKRDFGFVHYAERSSALKAVKDTERYEV----NGQPLEVVLA 366
Query: 455 RPLQRGKGKH 464
+P + + KH
Sbjct: 367 KP--QAERKH 374
Score = 50 (22.7 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 74 TQKEDEVKES-VDEYEKDE 91
++ EDEV+E V+EYE++E
Sbjct: 19 SEMEDEVEEEQVEEYEEEE 37
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 304 (112.1 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 92/292 (31%), Positives = 145/292 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F + + A++AV N I GK GV S
Sbjct: 213 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKLCDNYEIRPGKHLGVCISVA 272
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 273 NNRLFVGSIPKNKTKENILEEFNKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 331
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 332 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 386
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 387 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMNEMNGKEI-EGEEIEIVLAK-- 438
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P ++ K + A+R +P P GR RG G PP
Sbjct: 439 PPDKKRKERQAARQASRSTAYEDYYYYPPPRMPPPIRGRGRGGRG-GYGYPP 489
Score = 48 (22.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 29/86 (33%), Positives = 30/86 (34%)
Query: 564 PPPRSRAPV---DYGSR----VVPDRRPYRDEYTSR-GSGYPDMPRSTSRGAARRPYV-- 613
PPPR P+ G R PD Y D Y G Y D RG PY
Sbjct: 466 PPPRMPPPIRGRGRGGRGGYGYPPDYYGYEDYYDDYYGYDYHDY-----RGGYEDPYYGY 520
Query: 614 DDGYAQRFER----------PPPSYR 629
DDGYA R PPP R
Sbjct: 521 DDGYAIRGRGGGGRGGRGAPPPPRGR 546
Score = 42 (19.8 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 18/44 (40%), Positives = 18/44 (40%)
Query: 564 PPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGA 607
PPPR RA Y R P P R RG G R RGA
Sbjct: 549 PPPRGRA--GYSQRGAP-MGPPRGARGGRG-GPAQQQRG--RGA 586
Score = 38 (18.4 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 547 GAPPPRGRAGYSQRG 561
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 301 (111.0 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 92/292 (31%), Positives = 144/292 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 185 FEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 245 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 304 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 359 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK-- 410
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P ++ K + A+R +P P GR RG G PP
Sbjct: 411 PPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRG-GYGYPP 461
Score = 48 (22.0 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 17/44 (38%), Positives = 17/44 (38%)
Query: 564 PPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGA 607
PPPR RA Y R P P R RG SRGA
Sbjct: 520 PPPRGRA--GYSQRGAP-LGPPRGSRGGRGGPAQQQRGRGSRGA 560
Score = 46 (21.3 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 18/58 (31%), Positives = 18/58 (31%)
Query: 574 YGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPPSYREG 631
YG R Y D Y GY R RG P G PPP R G
Sbjct: 474 YGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGA----PPPRGRAG 527
Score = 38 (18.4 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 518 GAPPPRGRAGYSQRG 532
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 300 (110.7 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 92/292 (31%), Positives = 144/292 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 185 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 245 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 304 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 359 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK-- 410
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
P ++ K + A+R +P P GR RG G PP
Sbjct: 411 PPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRG-GYGYPP 461
Score = 48 (22.0 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 17/44 (38%), Positives = 17/44 (38%)
Query: 564 PPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGA 607
PPPR RA Y R P P R RG SRGA
Sbjct: 520 PPPRGRA--GYSQRGAP-LGPPRGSRGGRGGPAQQQRGRGSRGA 560
Score = 46 (21.3 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 18/58 (31%), Positives = 18/58 (31%)
Query: 574 YGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPPSYREG 631
YG R Y D Y GY R RG P G PPP R G
Sbjct: 474 YGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGA----PPPRGRAG 527
Score = 38 (18.4 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 518 GAPPPRGRAGYSQRG 532
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 283 (104.7 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 79/238 (33%), Positives = 126/238 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 154 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 213
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 214 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 272
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 273 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 327
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 328 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK 379
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 289 (106.8 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 83/253 (32%), Positives = 134/253 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 147 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 206
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 207 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 265
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 266 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 320
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 321 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK-- 372
Query: 455 RPLQRGKGKHASR 467
P ++ K + A+R
Sbjct: 373 PPDKKRKERQAAR 385
Score = 55 (24.4 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 29/114 (25%), Positives = 34/114 (29%)
Query: 565 PPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERP 624
PP + +R Y D Y P R RG R Y GY +
Sbjct: 373 PPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY---GYPPDYYGY 429
Query: 625 PPSYREGRARDYETVSGS-KRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAP 677
Y + DY G + PY DD G R R G GAP
Sbjct: 430 EDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 483
Score = 48 (22.0 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 30/94 (31%), Positives = 34/94 (36%)
Query: 601 RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG 660
R +R A+R +D Y R PP R GR R G + Y D Y
Sbjct: 381 RQAARQASRSTAYEDYYYHPPPRMPPPIR-GRGR-----GGGRGGYGYPPDY---YGYED 431
Query: 661 VRHSRARLDY-DLGGGA--PQYG--DAYGDRMGR 689
DY D GG P YG D Y R GR
Sbjct: 432 YYDDYYGYDYHDYRGGYEDPYYGYDDGYAVR-GR 464
Score = 47 (21.6 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 28/93 (30%), Positives = 28/93 (30%)
Query: 546 PSYPKP--GLKREYGRRDEVPPPRSRAPVDY-----GSRVVPDRRPYRDEYTSRGSGYPD 598
P P P G R GR PP DY G R Y D Y GY
Sbjct: 402 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAV 461
Query: 599 MPRSTSRGAARRPYVDDGYAQRFERPPPSYREG 631
R RG P G PPP R G
Sbjct: 462 RGRGGGRGGRGAPPPPRGRGA----PPPRGRAG 490
Score = 40 (19.1 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 458 QRGKGKHASRGD 469
QRG+G SRG+
Sbjct: 515 QRGRGSRGSRGN 526
Score = 38 (18.4 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 481 GAPPPRGRAGYSQRG 495
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 289 (106.8 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 83/253 (32%), Positives = 134/253 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 185 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 245 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 304 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 359 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK-- 410
Query: 455 RPLQRGKGKHASR 467
P ++ K + A+R
Sbjct: 411 PPDKKRKERQAAR 423
Score = 55 (24.4 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 29/114 (25%), Positives = 34/114 (29%)
Query: 565 PPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERP 624
PP + +R Y D Y P R RG R Y GY +
Sbjct: 411 PPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY---GYPPDYYGY 467
Query: 625 PPSYREGRARDYETVSGS-KRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAP 677
Y + DY G + PY DD G R R G GAP
Sbjct: 468 EDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 521
Score = 48 (22.0 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 30/94 (31%), Positives = 34/94 (36%)
Query: 601 RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG 660
R +R A+R +D Y R PP R GR R G + Y D Y
Sbjct: 419 RQAARQASRSTAYEDYYYHPPPRMPPPIR-GRGR-----GGGRGGYGYPPDY---YGYED 469
Query: 661 VRHSRARLDY-DLGGGA--PQYG--DAYGDRMGR 689
DY D GG P YG D Y R GR
Sbjct: 470 YYDDYYGYDYHDYRGGYEDPYYGYDDGYAVR-GR 502
Score = 47 (21.6 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 28/93 (30%), Positives = 28/93 (30%)
Query: 546 PSYPKP--GLKREYGRRDEVPPPRSRAPVDY-----GSRVVPDRRPYRDEYTSRGSGYPD 598
P P P G R GR PP DY G R Y D Y GY
Sbjct: 440 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAV 499
Query: 599 MPRSTSRGAARRPYVDDGYAQRFERPPPSYREG 631
R RG P G PPP R G
Sbjct: 500 RGRGGGRGGRGAPPPPRGRGA----PPPRGRAG 528
Score = 40 (19.1 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 458 QRGKGKHASRGD 469
QRG+G SRG+
Sbjct: 553 QRGRGSRGSRGN 564
Score = 38 (18.4 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 519 GAPPPRGRAGYSQRG 533
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 289 (106.8 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 83/253 (32%), Positives = 134/253 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 185 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 245 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 304 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 359 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK-- 410
Query: 455 RPLQRGKGKHASR 467
P ++ K + A+R
Sbjct: 411 PPDKKRKERQAAR 423
Score = 55 (24.4 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 29/114 (25%), Positives = 34/114 (29%)
Query: 565 PPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERP 624
PP + +R Y D Y P R RG R Y GY +
Sbjct: 411 PPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY---GYPPDYYGY 467
Query: 625 PPSYREGRARDYETVSGS-KRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAP 677
Y + DY G + PY DD G R R G GAP
Sbjct: 468 EDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 521
Score = 48 (22.0 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 30/94 (31%), Positives = 34/94 (36%)
Query: 601 RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG 660
R +R A+R +D Y R PP R GR R G + Y D Y
Sbjct: 419 RQAARQASRSTAYEDYYYHPPPRMPPPIR-GRGR-----GGGRGGYGYPPDY---YGYED 469
Query: 661 VRHSRARLDY-DLGGGA--PQYG--DAYGDRMGR 689
DY D GG P YG D Y R GR
Sbjct: 470 YYDDYYGYDYHDYRGGYEDPYYGYDDGYAVR-GR 502
Score = 47 (21.6 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 28/93 (30%), Positives = 28/93 (30%)
Query: 546 PSYPKP--GLKREYGRRDEVPPPRSRAPVDY-----GSRVVPDRRPYRDEYTSRGSGYPD 598
P P P G R GR PP DY G R Y D Y GY
Sbjct: 440 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAV 499
Query: 599 MPRSTSRGAARRPYVDDGYAQRFERPPPSYREG 631
R RG P G PPP R G
Sbjct: 500 RGRGGGRGGRGAPPPPRGRGA----PPPRGRAG 528
Score = 40 (19.1 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 458 QRGKGKHASRGD 469
QRG+G SRG+
Sbjct: 553 QRGRGSRGSRGN 564
Score = 38 (18.4 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 519 GAPPPRGRAGYSQRG 533
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 289 (106.8 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 83/253 (32%), Positives = 134/253 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 185 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 245 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 304 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 359 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK-- 410
Query: 455 RPLQRGKGKHASR 467
P ++ K + A+R
Sbjct: 411 PPDKKRKERQAAR 423
Score = 55 (24.4 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 29/114 (25%), Positives = 34/114 (29%)
Query: 565 PPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERP 624
PP + +R Y D Y P R RG R Y GY +
Sbjct: 411 PPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY---GYPPDYYGY 467
Query: 625 PPSYREGRARDYETVSGS-KRPYSVVDDVPPRYADPGVRHSRARLDYDLGGGAP 677
Y + DY G + PY DD G R R G GAP
Sbjct: 468 EDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 521
Score = 48 (22.0 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 30/94 (31%), Positives = 34/94 (36%)
Query: 601 RSTSRGAARRPYVDDGYAQRFERPPPSYREGRARDYETVSGSKRPYSVVDDVPPRYADPG 660
R +R A+R +D Y R PP R GR R G + Y D Y
Sbjct: 419 RQAARQASRSTAYEDYYYHPPPRMPPPIR-GRGR-----GGGRGGYGYPPDY---YGYED 469
Query: 661 VRHSRARLDY-DLGGGA--PQYG--DAYGDRMGR 689
DY D GG P YG D Y R GR
Sbjct: 470 YYDDYYGYDYHDYRGGYEDPYYGYDDGYAVR-GR 502
Score = 47 (21.6 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 28/93 (30%), Positives = 28/93 (30%)
Query: 546 PSYPKP--GLKREYGRRDEVPPPRSRAPVDY-----GSRVVPDRRPYRDEYTSRGSGYPD 598
P P P G R GR PP DY G R Y D Y GY
Sbjct: 440 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAV 499
Query: 599 MPRSTSRGAARRPYVDDGYAQRFERPPPSYREG 631
R RG P G PPP R G
Sbjct: 500 RGRGGGRGGRGAPPPPRGRGA----PPPRGRAG 528
Score = 40 (19.1 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 458 QRGKGKHASRGD 469
QRG+G SRG+
Sbjct: 553 QRGRGSRGSRGN 564
Score = 38 (18.4 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 519 GAPPPRGRAGYSQRG 533
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 289 (106.8 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 83/253 (32%), Positives = 134/253 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + +N+G+AF+ F E A++AV + I GK GV S
Sbjct: 185 FEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 245 NNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD +P E+MA+VK +FV L + E+ + E
Sbjct: 304 QARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE-- 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++ E K+E + K KD+ FV F+ AAV +N E+ EG+ V A+
Sbjct: 359 KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK-- 410
Query: 455 RPLQRGKGKHASR 467
P ++ K + A+R
Sbjct: 411 PPDKKRKERQAAR 423
Score = 131 (51.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 46/151 (30%), Positives = 69/151 (45%)
Query: 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRK 415
V +AD +P E+MA+VK +FV L + E+ + E K++ E K+E + K K
Sbjct: 323 VEWADPVEEPDPEVMAKVKVLFVRNLATTVTEE-ILE--KSFSEFGKLERVK-----KLK 374
Query: 416 DFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFXXXXX 475
D+ FV F+ AAV +N E+ EG+ V A+ P ++ K + A+R
Sbjct: 375 DYAFVHFEDRGAAVKAMDEMNGKEI-EGEEIEIVLAK--PPDKKRKERQAAR-----QAS 426
Query: 476 XXXXXXXXWGLPSPRSLPGRSARGIGSRLPP 506
+ P PR P RG G PP
Sbjct: 427 RSTAYEDYYYHPPPRMPPPIRGRGRGGXYPP 457
Score = 51 (23.0 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 20/60 (33%), Positives = 21/60 (35%)
Query: 564 PPPRSRAPV---DYGSRVVPDRRPYRDEYTS---------RGSGYPDMPRSTSRGAARRP 611
PPPR P+ G PD Y D Y RG GY D R RG P
Sbjct: 438 PPPRMPPPIRGRGRGGXYPPDYYGYEDYYDDYYGYDYHDYRG-GYEDRGRGGGRGGRGAP 496
Score = 45 (20.9 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 21/62 (33%), Positives = 24/62 (38%)
Query: 558 GRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGY 617
G R PPPR P GSR R + RGS R + G R+ DGY
Sbjct: 491 GGRGAPPPPRPLGP-PRGSR--GGRGGPAQQQRGRGSRGSRGSRGGNVGGKRKA---DGY 544
Query: 618 AQ 619
Q
Sbjct: 545 NQ 546
Score = 44 (20.5 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 601 RSTSRGAARRPYVDDGYAQRFERPPPSYREGRAR 634
R +R A+R +D Y R PP R GR R
Sbjct: 419 RQAARQASRSTAYEDYYYHPPPRMPPPIR-GRGR 451
Score = 43 (20.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 597 PDMPRSTSRGAARRPYVDDGYAQRFERPPP 626
PD R R AAR+ Y + PPP
Sbjct: 412 PDKKRK-ERQAARQASRSTAYEDYYYHPPP 440
Score = 40 (19.1 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 16/50 (32%), Positives = 16/50 (32%)
Query: 546 PSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSG 595
P P P R GR PP Y D YR Y RG G
Sbjct: 440 PRMPPP--IRGRGRGGXYPPDYYGYEDYYDDYYGYDYHDYRGGYEDRGRG 487
Score = 39 (18.8 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 458 QRGKGKHASRG 468
QRG+G SRG
Sbjct: 519 QRGRGSRGSRG 529
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 293 (108.2 bits), Expect = 9.4e-23, Sum P(2) = 9.4e-23
Identities = 87/288 (30%), Positives = 142/288 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G + ++RLMM+P + N+G+AF+ F T E A++AV N I GK GV S
Sbjct: 183 FEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVKLCNNNEIRPGKHIGVCISVA 242
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TK+ + E+ + + D+ L +++ NRGF FL + A
Sbjct: 243 NNRLFVGSIPKSKTKDQIVEEFAKV-TEGLNDVILYHQPDDKKKNRGFCFLGYEDHKTAA 301
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L ++ E+ + +
Sbjct: 302 QARRRLMSGKVKVWG--NVVTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTF 359
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G++ +++ K KD+ F+ F+ D AV ++ +L EG+ V A+
Sbjct: 360 CQFGKLERVK--------KLKDYAFIHFEERDGAVKALAELHGKDL-EGEPIEIVFAK-- 408
Query: 455 RPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLP---SPRSLPGRSARG 499
P Q+ K + A R +G P P GR ARG
Sbjct: 409 PPDQKRKERKAQR---QAAKTQMYDEYYYYGPPHVHQPTRARGRGARG 453
Score = 38 (18.4 bits), Expect = 9.4e-23, Sum P(2) = 9.4e-23
Identities = 18/65 (27%), Positives = 23/65 (35%)
Query: 546 PSYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSR 605
P +P R G R P + DY + D YR Y GY D ++ R
Sbjct: 438 PHVHQPTRARGRGARGYSYPHDYYSYEDYYNYYGYDYHNYRGGYDDPYYGYDDF-QAHVR 496
Query: 606 GAARR 610
G R
Sbjct: 497 GRGNR 501
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 293 (108.2 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 73/215 (33%), Positives = 117/215 (54%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQD 275
F + G + ++RLMM+P T N+G+AF+ F T E A++AV N I +GK GV S
Sbjct: 182 FEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++ LF+G+I K+ TKE + E+ + + D+ L +++ NRGF FLE+ A
Sbjct: 242 NNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL V ++G V +AD DP E+MA+VK +FV L + E+ + +
Sbjct: 301 QARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAF 358
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+G++ +++ K KD+ F+ FD D AV
Sbjct: 359 SQFGKLERVK--------KLKDYAFIHFDERDGAV 385
Score = 39 (18.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 441 GEGDNKAKVRARLSRPLQRGKGKHASRG 468
G G + AR QRG+G +RG
Sbjct: 527 GPGSARGVRGARGGAQQQRGRGVRGARG 554
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 278 (102.9 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 65/223 (29%), Positives = 118/223 (52%)
Query: 220 VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL 279
+GEVTEVR+M + KG+AF+ F + + A +A+ L N GK+ + +Q L
Sbjct: 115 IGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRL 174
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339
FLGN+ + W + +K+ G V+ + L ++ N G NRGFAF+E+ + + A +
Sbjct: 175 FLGNVPRNWMESDIKKAANRIG-PGVQIVELPKEPQNMGRNRGFAFIEYYNHACA--EYS 231
Query: 340 RLQKRDVLFGVDRPAK-VSFADSFIDPG-DEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ + + F +D A VS+A+S G D +QVK +++ LP ++R++ L +++
Sbjct: 232 KQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHH 291
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
G+I K+ + P + +GFV + + + K+ E+
Sbjct: 292 GKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEI 334
Score = 45 (20.9 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 53 DNKPV-VVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
DN P ++E+E + + + E+E++E V+ E++E
Sbjct: 26 DNDPEEILEEEVEYEEVEEEEIEEIEEEIEEEVEVEEEEE 65
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 276 (102.2 bits), Expect = 6.7e-21, P = 6.7e-21
Identities = 75/249 (30%), Positives = 129/249 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F G + ++RLMM+P T N+G+AF+ F E A AV +L N I GK + S
Sbjct: 184 FENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVP 243
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
+ LF+GNI K+ K+ + E+ + ++ + +++ NRGF FLE+ S A
Sbjct: 244 NLRLFVGNIPKSKGKDEILEEFGKLTA-GLYEVIIYSSPDDKKKNRGFCFLEYESHKAAS 302
Query: 336 DAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL R ++G D V +AD +P ++ M++VK ++V L ED+++E
Sbjct: 303 LAKRRLGTGRIKVWGCD--IIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQF 360
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+ YG++ +++ K KD+ F+ F+ D+AV + +N E+G + + L+
Sbjct: 361 EQYGKVERVK--------KIKDYAFIHFEDRDSAVEAMRGLNGKEIGASN----IEVSLA 408
Query: 455 RPLQRGKGK 463
+P K K
Sbjct: 409 KPPSDKKKK 417
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 271 (100.5 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 77/252 (30%), Positives = 136/252 (53%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ ++AR A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K D V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILAEMKKV-TDGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + K
Sbjct: 196 RRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIE---KE 250
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ I + + R K +D+ FV F+ + AV K++N L +G + + L++P
Sbjct: 251 FNNIKQGAVER---VKKIRDYAFVHFNKREDAVHAMKALNGKVL-DG---SPIEVTLAKP 303
Query: 457 LQRGKGKHASRG 468
+ + +RG
Sbjct: 304 VDKDSYVRYTRG 315
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 276 (102.2 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 74/255 (29%), Positives = 133/255 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV-TELKNPVINGKQCGVTPSQD 275
F + G++ ++RLMM+P + ++G+AF+ + E A A T + + GK V S
Sbjct: 220 FEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIA 279
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGM-NRGFAFLEFSSRSDA 334
+ LF+GNI KT +K+ + E+LK + + V D+ + +NE + NRGF F++F A
Sbjct: 280 NTRLFIGNIPKTKSKDEILEELKTHA-EGVVDVIVYSVPDNEKIKNRGFCFVDFIDHKTA 338
Query: 335 MDAFKRLQKRDVL-FGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVREL 393
D +++ + + F D V +A+ +P ++ M++VK +++ + + E+++ EL
Sbjct: 339 SDIKRKIAQHKIRPFNAD--VYVDWAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLNEL 396
Query: 394 LKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453
K Y + +++ K KD+ F+ F+ D + + N EL EG V A L
Sbjct: 397 FKEYASLDRVK--------KVKDYAFIHFNERDDCLKAMEEWNGKEL-EG---TVVEASL 444
Query: 454 SRPLQRGKGKHASRG 468
++P Q K K RG
Sbjct: 445 AKPPQEKKKKPVMRG 459
Score = 38 (18.4 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 673 GGGAPQYGDAYGDRMG 688
GGGA +G G R G
Sbjct: 466 GGGAGNHGQRGGQRGG 481
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 262 (97.3 bits), Expect = 6.8e-20, Sum P(2) = 6.8e-20
Identities = 73/254 (28%), Positives = 136/254 (53%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ + R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + + N
Sbjct: 196 RRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 253
Query: 397 Y--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
G + +++ K +D+ FV F + AV K++N L +G + + L+
Sbjct: 254 IKPGAVERVK--------KIRDYAFVHFTNREDAVEAMKALNGKVL-DG---SPIEVTLA 301
Query: 455 RPLQRGKGKHASRG 468
+P+ + +RG
Sbjct: 302 KPVDKDSYVRYTRG 315
Score = 47 (21.6 bits), Expect = 6.8e-20, Sum P(2) = 6.8e-20
Identities = 21/84 (25%), Positives = 31/84 (36%)
Query: 576 SRVVPDRRPYRDEYTSRGSGYPD--MPRSTSRGAARRPYVDDGYAQRFERPPPSYREGRA 633
S V + + Y EYT + G P T+ AA GYA P S +
Sbjct: 504 SAYVDEAKTYAAEYTLQALGIPTDGADAQTAAAAAASATAFPGYA--VPSPTASVSAAQL 561
Query: 634 RDYETVSGSKRPYSVVDDVPPRYA 657
+ T+ Y+ + V P +A
Sbjct: 562 KQAVTLGQDLAAYAAYE-VYPTFA 584
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 264 (98.0 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 81/257 (31%), Positives = 137/257 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 102 FESVGRIYEMRLMMDFDGK-NRGYAFVMYTQKHEAKRAVRELNNFEIRPGRLLGVCSSVD 160
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I KT +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 161 NCRLFIGGIPKTKKREEILEEVSKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 219
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L E+ +R+
Sbjct: 220 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETSEEILRQ-- 275
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G+ + R K +D+ FV F + D AV ++N E+ EG +++ L+
Sbjct: 276 -TFGQFNPGCVER---VKKIRDYAFVHFASRDDAVVAMDNLNGTEI-EG---SRIEVTLA 327
Query: 455 RPL---QRGKGKHASRG 468
+P+ Q + + AS+G
Sbjct: 328 KPVDKEQYTRYQKASKG 344
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 265 (98.3 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 74/254 (29%), Positives = 136/254 (53%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + + N
Sbjct: 196 RRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 253
Query: 397 Y--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
G + +++ K +D+ FV F + AV K++N L +G + + L+
Sbjct: 254 IKPGAVERVK--------KIRDYAFVHFTNREDAVEAMKALNGKVL-DG---SPIEVTLA 301
Query: 455 RPLQRGKGKHASRG 468
+P+ + +RG
Sbjct: 302 KPVDKDSYVRYTRG 315
Score = 40 (19.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 576 SRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAA 608
S V + + Y EYT + G P +S AA
Sbjct: 504 SAYVDEAKTYAAEYTLQTLGVPTDGADSSTAAA 536
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 256 (95.2 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 81/257 (31%), Positives = 136/257 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FEAVGRIYELRLMMDFDGK-NRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 150 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++
Sbjct: 209 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK--- 263
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV ++N EL EG + + L+
Sbjct: 264 KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-EG---SCLEVTLA 316
Query: 455 RPL---QRGKGKHASRG 468
+P+ Q + + A+RG
Sbjct: 317 KPVDKEQYSRYQKAARG 333
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 262 (97.3 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 74/252 (29%), Positives = 134/252 (53%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
+ L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + K
Sbjct: 196 RRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIE---KE 250
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ I + R K +D+ FV F + AV K++N L +G + + L++P
Sbjct: 251 FNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKALNGKVL-DG---SPIEVTLAKP 303
Query: 457 LQRGKGKHASRG 468
+ + +RG
Sbjct: 304 VDKDSYVRYTRG 315
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 262 (97.3 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 74/252 (29%), Positives = 134/252 (53%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
+ L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + K
Sbjct: 196 RRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIE---KE 250
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ I + R K +D+ FV F + AV K++N L +G + + L++P
Sbjct: 251 FNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKALNGKVL-DG---SPIEVTLAKP 303
Query: 457 LQRGKGKHASRG 468
+ + +RG
Sbjct: 304 VDKDSYVRYTRG 315
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 261 (96.9 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 74/254 (29%), Positives = 135/254 (53%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + + N
Sbjct: 196 RRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 253
Query: 397 Y--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
G + +++ K +D+ FV F + AV K++N L +G + + L+
Sbjct: 254 IKPGAVERVK--------KIRDYAFVHFSNREDAVEAMKALNGKVL-DG---SPIEVTLA 301
Query: 455 RPLQRGKGKHASRG 468
+P+ + +RG
Sbjct: 302 KPVDKDSYVRYTRG 315
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 264 (98.0 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 74/254 (29%), Positives = 136/254 (53%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQEAKDAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILAEMKKV-TEGVVDVIVYPSAADKTRNRGFAFVEYESHRTAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + + N
Sbjct: 196 RRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 253
Query: 397 Y--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
G + +++ K +D+ FV F + AV K++N L +G + + L+
Sbjct: 254 IKPGAVERVK--------KIRDYAFVHFSNREDAVEAMKALNGKML-DG---SPIEVTLA 301
Query: 455 RPLQRGKGKHASRG 468
+P+ + +RG
Sbjct: 302 KPVDKDSYVRYTRG 315
Score = 39 (18.8 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 576 SRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGYA 618
S V + + Y EYT + G P AA + GYA
Sbjct: 504 SAYVDEAKTYAAEYTLQTLGIPTDGADAPTAAAATAF--PGYA 544
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 258 (95.9 bits), Expect = 4.6e-19, P = 4.6e-19
Identities = 74/252 (29%), Positives = 133/252 (52%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQDSD 277
++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +L N I G+ GV S D+
Sbjct: 78 KIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
+ L R L+G P V +A+ ++ ++ M+ VK ++V L S E+ + K
Sbjct: 196 RRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIE---KE 250
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ I + R K +D+ FV F + AV K++N L +G + + L++P
Sbjct: 251 FNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKALNGKVL-DG---SPIEVTLAKP 303
Query: 457 LQRGKGKHASRG 468
+ + +RG
Sbjct: 304 VDKDSYVRYTRG 315
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 256 (95.2 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 81/257 (31%), Positives = 136/257 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 53 FEAVGRIYELRLMMDFDGK-NRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVD 111
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 112 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 170
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++
Sbjct: 171 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK--- 225
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV ++N EL EG + + L+
Sbjct: 226 KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-EG---SCLEVTLA 278
Query: 455 RPL---QRGKGKHASRG 468
+P+ Q + + A+RG
Sbjct: 279 KPVDKEQYSRYQKAARG 295
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 256 (95.2 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 81/257 (31%), Positives = 136/257 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FEAVGRIYELRLMMDFDGK-NRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 150 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++
Sbjct: 209 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK--- 263
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV ++N EL EG + + L+
Sbjct: 264 KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-EG---SCLEVTLA 316
Query: 455 RPL---QRGKGKHASRG 468
+P+ Q + + A+RG
Sbjct: 317 KPVDKEQYSRYQKAARG 333
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 255 (94.8 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 78/245 (31%), Positives = 130/245 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 93 FEAVGRIYELRLMMDFDGK-NRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVD 151
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 152 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 210
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++
Sbjct: 211 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK--- 265
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV S+N EL EG + + L+
Sbjct: 266 KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSLNGTEL-EG---SCLEVTLA 318
Query: 455 RPLQR 459
+P+ +
Sbjct: 319 KPVDK 323
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 255 (94.8 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 78/245 (31%), Positives = 130/245 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 93 FEAVGRIYELRLMMDFDGK-NRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVD 151
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 152 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 210
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++
Sbjct: 211 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK--- 265
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV S+N EL EG + + L+
Sbjct: 266 KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSLNGTEL-EG---SCLEVTLA 318
Query: 455 RPLQR 459
+P+ +
Sbjct: 319 KPVDK 323
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 254 (94.5 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 76/245 (31%), Positives = 130/245 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FESVGRIYEMRLMMDFDGK-NRGYAFVMYTQKHEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 150 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++++
Sbjct: 209 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKV- 265
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+G+ + R K +D+ FV F T + A+ ++N EL EG + + L+
Sbjct: 266 --FGQFNPGCVER---VKKIRDYAFVHFTTREDAIHAMNNLNGVEL-EG---SCLEVTLA 316
Query: 455 RPLQR 459
+P+ +
Sbjct: 317 KPVDK 321
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 252 (93.8 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 77/245 (31%), Positives = 130/245 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FETVGRIYELRLMMDFDGK-NRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 150 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++
Sbjct: 209 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK--- 263
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV ++N EL EG + + L+
Sbjct: 264 KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-EG---SCLEVTLA 316
Query: 455 RPLQR 459
+P+ +
Sbjct: 317 KPVDK 321
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 252 (93.8 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 77/245 (31%), Positives = 130/245 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FETVGRIYELRLMMDFDGK-NRGYAFVMYCHKNEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 150 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L ED ++
Sbjct: 209 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIK--- 263
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV ++N EL EG + + L+
Sbjct: 264 KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVHAMNNLNGTEL-EG---SCLEVTLA 316
Query: 455 RPLQR 459
+P+ +
Sbjct: 317 KPVDK 321
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 253 (94.1 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 73/254 (28%), Positives = 134/254 (52%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +L N I NG+ GV S D+
Sbjct: 71 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNC 129
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 130 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 188
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K L R L+G V +A+ ++ ++ M+ VK ++V L S E+ + + N
Sbjct: 189 RRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 246
Query: 397 Y--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
G + +++ K +D+ FV F + AV K++N L +G + + L+
Sbjct: 247 IKPGAVERVK--------KIRDYAFVHFSNREDAVEAMKALNGKVL-DG---SPIEVTLA 294
Query: 455 RPLQRGKGKHASRG 468
+P+ + +RG
Sbjct: 295 KPVDKDSYVRYTRG 308
Score = 42 (19.8 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 576 SRVVPDRRPYRDEYTSRGSGYP-DMPRSTSRGAARRPYVDDGYA 618
S V + + Y EYT + G P D T AA GYA
Sbjct: 497 SAFVDEAKTYAAEYTLQTLGIPTDGGDGTMATAAAAATAFPGYA 540
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 253 (94.1 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 73/254 (28%), Positives = 134/254 (52%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMD 336
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S R+ AM
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 337 AFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
K L R L+G V +A+ ++ ++ M+ VK ++V L S E+ + + N
Sbjct: 196 RRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 253
Query: 397 Y--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
G + +++ K +D+ FV F + AV K++N L +G + + L+
Sbjct: 254 IKPGAVERVK--------KIRDYAFVHFSNREDAVEAMKALNGKVL-DG---SPIEVTLA 301
Query: 455 RPLQRGKGKHASRG 468
+P+ + +RG
Sbjct: 302 KPVDKDSYVRYTRG 315
Score = 42 (19.8 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 576 SRVVPDRRPYRDEYTSRGSGYP-DMPRSTSRGAARRPYVDDGYA 618
S V + + Y EYT + G P D T AA GYA
Sbjct: 504 SAFVDEAKTYAAEYTLQTLGIPTDGGDGTMATAAAAATAFPGYA 547
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 256 (95.2 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 74/250 (29%), Positives = 131/250 (52%)
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSDTL 279
G++ EVR+MM+ N+G+AF+ F+T ++A+ A+ +L N I NG+ GV S D+ L
Sbjct: 80 GKIYEVRMMMD-FNGNNRGYAFVTFSTKQEAKNAMKQLNNYEIRNGRLLGVCASVDNCRL 138
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDAMDAF 338
F+G I KT +E + ++K D V D+ + + ++ NRGFAF+E+ + R+ AM
Sbjct: 139 FVGGIPKTKKREEILAEMKKV-TDGVLDVIVYPSAADKAKNRGFAFVEYETHRAAAMARR 197
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
K L R L+G P V +A+ ++ ++ MA VK ++V L E+ + K +
Sbjct: 198 KLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIE---KEFN 252
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
I + R K +D+ FV F + A+ ++N + +G + + L++P+
Sbjct: 253 SIKPGAVER---VKKIRDYAFVHFSQREDAINAMNALNGKVI-DG---SPIEVTLAKPVD 305
Query: 459 RGKGKHASRG 468
+ +RG
Sbjct: 306 KDSYVRYTRG 315
Score = 37 (18.1 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 487 PSPRSLPGRSARGIGSR 503
PS R++ RG+G R
Sbjct: 379 PSVRAVGAAGVRGLGGR 395
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 239 (89.2 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 75/245 (30%), Positives = 127/245 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIK--- 253
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
E +K + K +D+ FV F + AV A S+ N + +G A + L+
Sbjct: 254 ---AEFSKFKPGAVERVKKLRDYAFVHFFHREDAVA-AMSVMNGKCIDG---ASIEVTLA 306
Query: 455 RPLQR 459
+P+ +
Sbjct: 307 KPVNK 311
Score = 48 (22.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 589 YTSRGSGYPDMPRSTSRGAARRPYV 613
YTSR S YP P S + A +V
Sbjct: 496 YTSRPSSYPSYPLSPTISLANGSHV 520
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 240 (89.5 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 238 (88.8 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 78/246 (31%), Positives = 127/246 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E+RLMM + +N+GFAF+ + T E A+ A+ L N I G+ GV S D
Sbjct: 10 FERAGKIYELRLMME-FSGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFIGVCISLD 68
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
+ LF+G I + KE + +++K + V D+ + D+ + NRGFAF+E+ S A
Sbjct: 69 NCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAA 127
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL L+G R +V +A + E M +VK ++V L S ED ++
Sbjct: 128 MARRRLLPGTFQLWG--RAVQVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIK--- 182
Query: 395 KNYGEITKIELARNMPSAKR-KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453
E K + R + K+ +D+ FV F + AV A SI N + +G A + L
Sbjct: 183 ---AEFNKFK-PRVVERVKKLRDYAFVHFYNREDAVA-AMSIMNGKCIDG---ASIEVTL 234
Query: 454 SRPLQR 459
++P+ +
Sbjct: 235 AKPVNK 240
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 240 (89.5 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 240 (89.5 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 241 (89.9 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGSVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 240 (89.5 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 238 (88.8 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 78/246 (31%), Positives = 127/246 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E+RLMM + +N+GFAF+ + T E A+ A+ L N I G+ GV S D
Sbjct: 81 FERAGKIYELRLMME-FSGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFIGVCISLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
+ LF+G I + KE + +++K + V D+ + D+ + NRGFAF+E+ S A
Sbjct: 140 NCRLFIGAIPREKKKEEILKEMKRI-TEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAA 198
Query: 336 DAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A +RL L+G R +V +A + E M +VK ++V L S ED ++
Sbjct: 199 MARRRLLPGTFQLWG--RAVQVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIK--- 253
Query: 395 KNYGEITKIELARNMPSAKR-KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453
E K + R + K+ +D+ FV F + AV A SI N + +G A + L
Sbjct: 254 ---AEFNKFK-PRVVERVKKLRDYAFVHFYNREDAVA-AMSIMNGKCIDG---ASIEVTL 305
Query: 454 SRPLQR 459
++P+ +
Sbjct: 306 AKPVNK 311
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 240 (89.5 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
Score = 42 (19.8 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 589 YTSRGSGYPDMPRSTSRGAARRPYV 613
YTSR YP P S + A +V
Sbjct: 496 YTSRPYSYPSYPLSPTISLANGSHV 520
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 240 (89.5 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
Score = 41 (19.5 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 589 YTSRGSGYPDMPRSTSRGAARRPYV 613
YTSR YP P S + A +V
Sbjct: 496 YTSRPYSYPGYPLSPTISLANGSHV 520
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 240 (89.5 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 74/247 (29%), Positives = 129/247 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G++ E RLMM + +N+G+AF+ + T E+A+ A+ L N I GK GV S D
Sbjct: 81 FERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLD 139
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K KE + +++K + V D+ + + ++ NRGFAF+E+ S R+ A
Sbjct: 140 NCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAA 198
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +AD + +E M +VK ++V L S E+ ++
Sbjct: 199 MARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
Query: 395 KNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
+ G + +++ K +D+ FV F + AV A S+ N + +G A +
Sbjct: 257 NKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AMSVMNGKCIDG---ASIEVT 304
Query: 453 LSRPLQR 459
L++P+ +
Sbjct: 305 LAKPVNK 311
Score = 39 (18.8 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 589 YTSRGSGYPDMPRS 602
YTSR YP P S
Sbjct: 496 YTSRPYSYPSYPLS 509
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 237 (88.5 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 74/245 (30%), Positives = 129/245 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FETVGRIYELRLMMDFDGK-NRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K + + E++ + V ++ + + ++ NRGFAF+E+ S R+ A
Sbjct: 150 NCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L E+ ++
Sbjct: 209 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIK--- 263
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
K++G+ + R K +D+ FV F + + AV ++N EL EG + + L+
Sbjct: 264 KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-EG---SCLEVTLA 316
Query: 455 RPLQR 459
+P+ +
Sbjct: 317 KPVDK 321
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 236 (88.1 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 66/249 (26%), Positives = 114/249 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FSQ+G V +R+ + T+++ G+A++ + T +A+ EL +I G+ C + SQ
Sbjct: 81 FSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRD 140
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
L F+ N+ +AL + +G N+ + +D N G ++G+ F+ +
Sbjct: 141 PALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKVAQDEN--GNSKGYGFVHY 196
Query: 329 SSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
+ A A K L ++ V G P K F DE+ A ++V +
Sbjct: 197 ETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF----DEMKANFTNIYVKNINP 251
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
+D R L + YG++T LAR+ + K + FGFV F +H+ A + +N E G
Sbjct: 252 EVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEF-HG 310
Query: 444 DNKAKVRAR 452
N RA+
Sbjct: 311 QNLYVGRAQ 319
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 234 (87.4 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 73/245 (29%), Positives = 129/245 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FETVGRIYELRLMMDFDGK-NRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G I K + + E++ + V ++ + + ++ NRGFAF+E+ S R+ A
Sbjct: 150 NCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + R L+G V +A+ ID +++M VK ++V L E+ ++
Sbjct: 209 MARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIK--- 263
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+++G+ + R K +D+ FV F + + AV ++N EL EG + + L+
Sbjct: 264 RSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNLNGTEL-EG---SCLEVTLA 316
Query: 455 RPLQR 459
+P+ +
Sbjct: 317 KPVDK 321
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 224 (83.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 71/249 (28%), Positives = 128/249 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F Q G + E RLMM + +N+G+AF+ + T E+A++A+ L N I GK GV S D
Sbjct: 65 FEQAGHIYEFRLMME-FSGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLD 123
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS-RSDA 334
+ LF+G+I K KE ++E++ + V D+ + + + NRGFAF+E+ S ++ A
Sbjct: 124 NCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAA 182
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
M K + L+G +V +A+ + +E M +V+ ++V L S E+ +R
Sbjct: 183 MARRKLIPGTFQLWG--HTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRS-- 238
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
E ++++ K D+ F+ F + A+T +S+N + +G + + L+
Sbjct: 239 ----EFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESMNGKVI-DG---SPIEVTLA 290
Query: 455 RPLQRGKGK 463
+P + K
Sbjct: 291 KPASKDGNK 299
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 216 (81.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 73/238 (30%), Positives = 112/238 (47%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
GK GV S ++ LF+G+I K TKE + E+ + + D+ L +++ NRGF
Sbjct: 74 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDDKKKNRGFC 132
Query: 325 FLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
FLE+ A A +RL V ++G V +AD +P E+MA+VK +FV L
Sbjct: 133 FLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT 190
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
+ E+ + E K++ E K+E + K KD+ FV F+ AAV +N E+ EG
Sbjct: 191 TVTEE-ILE--KSFSEFGKLERVK-----KLKDYAFVHFEDRGAAVKAMDEMNGKEI-EG 241
Query: 444 DNKAKVRARLSRPLQRGKGKHASRGDFXXXXXXXXXXXXXWGLPSPRSLPGRSARGIG 501
+ V A+ P ++ K + A+R + P PR P RG G
Sbjct: 242 EEIEIVLAK--PPDKKRKERQAAR-----QASRSTAYEDYYYHPPPRMPPPIRGRGRG 292
Score = 47 (21.6 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 28/93 (30%), Positives = 28/93 (30%)
Query: 546 PSYPKP--GLKREYGRRDEVPPPRSRAPVDY-----GSRVVPDRRPYRDEYTSRGSGYPD 598
P P P G R GR PP DY G R Y D Y GY
Sbjct: 280 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAV 339
Query: 599 MPRSTSRGAARRPYVDDGYAQRFERPPPSYREG 631
R RG P G PPP R G
Sbjct: 340 RGRGGGRGGRGAPPPPRGRGA----PPPRGRAG 368
Score = 38 (18.4 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 485 GLPSPRSLPGRSARG 499
G P PR G S RG
Sbjct: 359 GAPPPRGRAGYSQRG 373
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 213 (80.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 59/197 (29%), Positives = 103/197 (52%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G +C T+++L+ + +G + D ++ D +N+ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLCSRTTEKSLRNYYQQWG--KLTDCVVLRDPSNK-RSRGFGFVTFSSVAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ V V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 79 MAARPHSVDGKVVDPKRAVAREESEKPGAHLA--VKKLFVGGIKEDTEEHHLRDYFEKYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRAR 452
+I IE+ + S K++ FGFVTFD HD + K +IN +AE+G+ ++ +++
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSRQEMQEV 196
Query: 453 LSRPLQRGKGKHASRGD 469
S G+G H GD
Sbjct: 197 QSST--SGRGGHIGLGD 211
Score = 37 (18.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 673 GGGAPQYGD 681
GGG P YG+
Sbjct: 268 GGGGPGYGN 276
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 216 (81.1 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 69/269 (25%), Positives = 129/269 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ DA D + ++K + + DR V S + E+ A+ K V++
Sbjct: 146 ETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R++EL YG+ +++ + P+ K K FGFV+F+ H+ A + +N ++
Sbjct: 203 DDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRRFEQLKQERISR 290
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 201 (75.8 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 60/199 (30%), Positives = 101/199 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 11 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 66
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +RE + Y
Sbjct: 67 MSARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLREYFEKY 123
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K +++
Sbjct: 124 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 183
Query: 452 RLSRPLQRGKGKHASRGDF 470
S+ + G G RG+F
Sbjct: 184 ASSQRGKGGSGNFMGRGNF 202
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 40/144 (27%), Positives = 73/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A++ ++ V+ K+
Sbjct: 29 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSRE 88
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L+E + YG +E + ++ED + G RGFAF
Sbjct: 89 DSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYG--KIETIEVMEDRQS-GKKRGFAF 145
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 146 VTFDDH-DTVDKIV-VQKYHTING 167
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 215 (80.7 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 69/269 (25%), Positives = 129/269 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ +A D K ++K + + DR V S + E+ A+ K V++
Sbjct: 146 ETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+ A + +N E+
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 42 (19.8 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPY-RDEYTSRGSGYPDMPRSTSRGAARRP 611
VP + R P Y + RP R + R G+ MP S R + RP
Sbjct: 413 VPQAQGRPPY-YTPNQLAQMRPNPRWQQGGRPQGFQGMP-SAIRQSGPRP 460
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 215 (80.7 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 69/269 (25%), Positives = 129/269 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ +A D K ++K + + DR V S + E+ A+ K V++
Sbjct: 146 ETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+ A + +N E+
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 42 (19.8 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPY-RDEYTSRGSGYPDMPRSTSRGAARRP 611
VP + R P Y + RP R + R G+ MP S R + RP
Sbjct: 413 VPQAQGRPPY-YTPNQLAQMRPNPRWQQGGRPQGFQGMP-SAIRQSGPRP 460
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 214 (80.4 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 69/269 (25%), Positives = 129/269 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ +A D K ++K + + DR V S + E+ A+ K V++
Sbjct: 146 ETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++ ++EL +G+ +++ R+ PS K K FGFV+++ H+ A + +N E+
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 42 (19.8 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPY-RDEYTSRGSGYPDMPRSTSRGAARRP 611
VP + R P Y + RP R + R G+ MP S R + RP
Sbjct: 413 VPQAQGRPPY-YTPNQLAQMRPNPRWQQGGRPQGFQGMP-SAIRQSGPRP 460
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 212 (79.7 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 57/235 (24%), Positives = 113/235 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS +G+V +R+ + T+++ G+A++ + +A+ EL +I GK C + SQ
Sbjct: 62 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRD 121
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
L F+ N+ +AL + +G N+ + +D G+++G+ F+ +
Sbjct: 122 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKVAQDEF--GVSKGYGFVHY 177
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG---DEIMAQVKTVFVDGLPASW 385
+ A +A K + +L D+ V S D +E+ A +++ +
Sbjct: 178 ETAEAANNAIKHVN--GMLLN-DKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEV 234
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+++ R+L + +GEIT L+R+ K + FGFV F TH++A + +N+ E+
Sbjct: 235 EDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 211 (79.3 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 68/269 (25%), Positives = 128/269 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + V+ GK + SQ
Sbjct: 32 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRD 91
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 92 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 146
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ DA D + ++K + + DR V S + E+ A+ K V++
Sbjct: 147 ETQ-DAAD--RAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDM 203
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D+ R++EL YG+ +++ + P+ K + FGFV+++ H+ A + +N EL
Sbjct: 204 DDQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV 262
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 263 FVGRAQKKMERQAELKRKFEQLKQERISR 291
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 179 (68.1 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 57/203 (28%), Positives = 100/203 (49%)
Query: 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRS 332
S+ LF+G +C +E+L+ + +G + D ++ D +++ +RGF F+ FSS +
Sbjct: 17 SEQFRKLFIGGLCSETKEESLRNYYQQWG--KLTDCVVIRDPSSQ-RSRGFGFVIFSSVA 73
Query: 333 DAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRE 392
+ +DA + + V +V + PG K +FV G+ E +R+
Sbjct: 74 E-VDAAMAARPHSIDGRVVASKRVVPREESGKPG--ACVTTKKLFVGGIKEDTTERHLRD 130
Query: 393 LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNK 446
+ YG I IE+ R S ++ FGFVTFD HD + K +IN +A+L + ++
Sbjct: 131 YFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSR 188
Query: 447 AKVRARLSRPLQRGKGKHASRGD 469
++ S +RG+G+H GD
Sbjct: 189 QGMQEVQSS--RRGRGRHVGFGD 209
Score = 99 (39.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 37/174 (21%), Positives = 81/174 (46%)
Query: 189 QERRKRKEF-EVFXXXXXXXXXXXXXXXXFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
+++R+ ++F ++F + Q G++T+ ++ +P +++++GF F+ F++
Sbjct: 12 KKKRESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSS 71
Query: 248 VEQARQAVTELKNPVINGKQCG---VTPSQDSDT---------LFLGNICKTWTKEALKE 295
V + A+ + I+G+ V P ++S LF+G I + T+ L++
Sbjct: 72 VAEVDAAMAARPHS-IDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRD 130
Query: 296 KLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
+ YG ++ + ++ S G F F+ F D +D LQK + G
Sbjct: 131 YFERYGT--IDAIEIIRQS---GRKTAFGFVTFDDH-DPVDKIV-LQKYHTING 177
Score = 61 (26.5 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 674 GGAPQYGDAYGDR-MGRSNL 692
GG P YG YGDR G SNL
Sbjct: 261 GGCPGYGGGYGDRGAGYSNL 280
Score = 43 (20.2 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 601 RSTSRGAARRPYVDDGY 617
R S G AR P + DGY
Sbjct: 232 RGGSEGYARGPVLGDGY 248
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 211 (79.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 68/269 (25%), Positives = 129/269 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ +A D K ++K + + DR V S + E+ A+ K V++
Sbjct: 146 ETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+ A + +N E+
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 42 (19.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPY-RDEYTSRGSGYPDMPRSTSRGAARRP 611
VP + R P Y + RP R + R G+ MP S R + RP
Sbjct: 413 VPQAQGRPPY-YTPNQLAQMRPNPRWQQGGRPQGFQGMP-SAIRQSGPRP 460
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 211 (79.3 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 68/269 (25%), Positives = 129/269 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ +A D K ++K + + DR V S + E+ A+ K V++
Sbjct: 146 ETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+ A + +N E+
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 42 (19.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPY-RDEYTSRGSGYPDMPRSTSRGAARRP 611
VP + R P Y + RP R + R G+ MP S R + RP
Sbjct: 413 VPQAQGRPPY-YTPNQLAQMRPNPRWQQGGRPQGFQGMP-SAIRQSGPRP 460
Score = 39 (18.8 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 21/84 (25%), Positives = 32/84 (38%)
Query: 547 SYPKPGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRG--SGYPDM-PRST 603
S P+P L+ E P R +D+G ++ D S G + ++ PR+
Sbjct: 456 SGPRPTLRHLAPTGSECP---DRLAMDFGGAGAA-QQGLTDSCQSGGVPTAVQNLAPRAA 511
Query: 604 SRGAARRPYVDDGYAQRFERPPPS 627
AA R YA P P+
Sbjct: 512 VAAAAPRAVAPYKYASSVRSPHPA 535
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 206 (77.6 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 68/269 (25%), Positives = 126/269 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAANKAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++ +REL +G+ +++ R+ S K K FGFV+++ H+ A + +N E+
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 45 (20.9 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 21/78 (26%), Positives = 29/78 (37%)
Query: 551 PGLKREYGRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDM-PRSTSRGAAR 609
P R+ G R P R AP G+ P + + P++ PR+T AA
Sbjct: 450 PSALRQSGPR---PALRHLAPT--GNAPASRGLPTTAQRVGVPTAVPNLAPRATVAAAAP 504
Query: 610 RPYVDDGYAQRFERPPPS 627
R YA P P+
Sbjct: 505 RAVAPYKYASNVRSPHPA 522
Score = 42 (19.8 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPY-RDEYTSRGSGYPDMPRSTSRGAARRP 611
VP + R P Y + RP R + R G+ MP S R + RP
Sbjct: 413 VPQAQGRPPY-YTPNQLAQMRPNPRWQQGGRPQGFQGMP-SALRQSGPRP 460
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 195 (73.7 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 61/200 (30%), Positives = 100/200 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 23 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +RE + Y
Sbjct: 79 MSARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLREYFEKY 135
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K +++
Sbjct: 136 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 195
Query: 452 RLS-RPLQRGKGKHASRGDF 470
S R G G RG+F
Sbjct: 196 ASSQRGRGGGSGNFMGRGNF 215
Score = 129 (50.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 40/144 (27%), Positives = 73/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A++ ++ V+ K+
Sbjct: 41 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSRE 100
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L+E + YG +E + ++ED + G RGFAF
Sbjct: 101 DSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYG--KIETIEVMEDRQS-GKKRGFAF 157
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 158 VTFDDH-DTVDKIV-VQKYHTING 179
Score = 39 (18.8 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 220 GGGGPGYGNPGG 231
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 206 (77.6 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 68/269 (25%), Positives = 126/269 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G V +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+AF+ F
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYAFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAANKAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++ +REL +G+ +++ R+ S K K FGFV+++ H+ A + +N E+
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + +A L R ++ K + SR
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 44 (20.5 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 569 RAPVDYGSRVVPDRRPYRDEYTSRG--SGYPDM-PRSTSRGAARRPYVDDGYAQRFERPP 625
R +D+G ++ D S G + P++ PR+T AA R YA P
Sbjct: 491 RLAMDFGGAGAA-QQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPH 549
Query: 626 PS 627
P+
Sbjct: 550 PA 551
Score = 42 (19.8 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPY-RDEYTSRGSGYPDMPRSTSRGAARRP 611
VP + R P Y + RP R + R G+ MP S R + RP
Sbjct: 413 VPQAQGRPPY-YTPNQLAQMRPNPRWQQGGRPQGFQGMP-SALRQSGPRP 460
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 196 (74.1 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 77
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 78 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 135
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 136 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 192
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 193 QEVQSSRSGRG 203
Score = 116 (45.9 bits), Expect = 0.00066, P = 0.00066
Identities = 44/175 (25%), Positives = 81/175 (46%)
Query: 189 QERRKRKEF-EVFXXXXXXXXXXXXXXXXFSQVGEVTEVRLMMNPQTKKNKGFAFLRF-- 245
+++R++++F ++F + Q G++T+ +M +P +K+++GF F+ F
Sbjct: 11 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 70
Query: 246 -ATVEQARQA--------VTELKNPVINGKQCGVTPSQDS-DTLFLGNICKTWTKEALKE 295
A V+ A A V E K V ++ G + + LF+G I + + L++
Sbjct: 71 MAEVDAAMAARPHSIDGRVVEPKRAVAR-EESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 129
Query: 296 KLKHYG-VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
+ YG +D +E +T G RGF F+ F D +D LQK + G
Sbjct: 130 YFEEYGKIDTIEIIT----DRQSGKKRGFGFVTFDDH-DPVDKIV-LQKYHTING 178
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 180 (68.4 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 56/192 (29%), Positives = 94/192 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
L +G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 10 LLIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 65
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 66 VCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 122
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA-ELGEGDNKAKVRARLSRP 456
G+I IE+ + S K++ F FVTFD HD T K ++ + G N +V+ LS+
Sbjct: 123 GKIETIEVMEDSQSGKKRGFAFVTFDDHD---TVDKIVDQKYHIINGHN-CEVKKALSKQ 178
Query: 457 LQRGKGKHASRG 468
+ G RG
Sbjct: 179 EMQSAGSQRGRG 190
Score = 132 (51.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/144 (28%), Positives = 73/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ AV ++ V+ K+
Sbjct: 28 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKVDGRVVEPKRAVSRE 87
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++EDS + G RGFAF
Sbjct: 88 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDSQS-GKKRGFAF 144
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D QK ++ G
Sbjct: 145 VTFDDH-DTVDKIVD-QKYHIING 166
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 180 (68.4 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 35 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 90
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 91 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 147
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 148 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 207
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 208 ASSS--QRGRSGSGNFG 222
Score = 126 (49.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 53 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 110
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 111 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 167
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 168 AFVTFDDH-DSVDKIV-IQKYHTVNG 191
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 196 (74.1 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 66
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 67 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 124
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 181
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 182 QEVQSSRSGRG 192
Score = 39 (18.8 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 258 GGGGPGYGNQGG 269
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 202 (76.2 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 72/238 (30%), Positives = 112/238 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F + G V +RLMM+P +N+G+AF+ F E A+ V + I GK GV S
Sbjct: 14 FEKAGPVWSLRLMMDP-LGQNRGYAFITFCGKEAAQGLVKPCDSCEIRPGKVLGVCFSVA 72
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
++T F+G K TKE +E K + + + L +++ N GF FLE+ A
Sbjct: 73 NNT-FVGFTPKNKTKENFEEFSKV--TEGLVGIILDHQPDDKKKNWGFCFLEYEDHKSAA 129
Query: 336 DAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLK 395
A L V++G V AD +P E MA+VK +FV L + E+ + +
Sbjct: 130 QARLWLMSGKVVWG--NVVTVERADPVEEPDPEGMAKVKVLFVRNLATTVTEEILEKSFS 187
Query: 396 NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453
+GE+ +++ K D+ FV F+ +A V +N E+ EG+ V A L
Sbjct: 188 QFGELERVK--------KLTDYAFVHFEDREA-VKAVDEMNGKEI-EGEEIEIVLAML 235
Score = 39 (18.8 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 18/62 (29%), Positives = 20/62 (32%)
Query: 558 GRRDEVPPPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRSTSRGAARRPYVDDGY 617
GR PP RSRA G R RG G + R + D GY
Sbjct: 328 GRGAPSPPLRSRAGCSQGGTFGTTRSSGGGRGGPRGPGSRGARGNQGRNVGGKRKAD-GY 386
Query: 618 AQ 619
Q
Sbjct: 387 NQ 388
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 186 (70.5 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 59/194 (30%), Positives = 95/194 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T +L+E + +G + D ++ D + +RGF+F+ +S + + A
Sbjct: 39 LFIGGLSFETTDGSLREHFEKWGT--LTDCVVMRDPQRK-CSRGFSFVTYSCVEE-VGAV 94
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V+ V P + VS DS I PG +M V+ +FV G+ +E +R+ + Y
Sbjct: 95 MCARPHKVVGCVVEPKRAVSREDSII-PGAHLM--VEKIFVGGIKEDTEEYNLRDYFEKY 151
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN-KAKVRARLSRP 456
G+I IE+ + S K++ F FVTFD HD T K + G N + K + S
Sbjct: 152 GKIETIEVMEDRQSGKKRGFAFVTFDNHD---TVDKVVQKYHTVNGHNCEVKEQEMPSAG 208
Query: 457 LQRGKGKHASRGDF 470
QRG G G+F
Sbjct: 209 SQRGHG--GGSGNF 220
Score = 118 (46.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 40/147 (27%), Positives = 74/147 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS--- 273
F + G +T+ +M +PQ K ++GF+F+ ++ VE+ + + V+ C V P
Sbjct: 57 FEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCARPHKVVG---CVVEPKRAV 113
Query: 274 --QDS---------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
+DS + +F+G I + + L++ + YG +E + ++ED + G RG
Sbjct: 114 SREDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRG 170
Query: 323 FAFLEFSSRSDAMDAFKRLQKRDVLFG 349
FAF+ F + D +D K +QK + G
Sbjct: 171 FAFVTFDNH-DTVD--KVVQKYHTVNG 194
Score = 44 (20.5 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 657 ADPGVRHSRARLDYDLGGGAPQYGDAYGDRMG 688
A G R +R Y GGG P YG+ G G
Sbjct: 258 AGHGGRRGYSRGGY--GGGGPGYGNQDGGSGG 287
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 178 (67.7 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 42/124 (33%), Positives = 74/124 (59%)
Query: 219 QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTPSQDSD 277
++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +L N I NG+ GV S D+
Sbjct: 78 KIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNC 136
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337
LF+G I KT +E + ++K + V D+ + + ++ NRGFAF+E+ S A A
Sbjct: 137 RLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195
Query: 338 FKRL 341
++L
Sbjct: 196 RRKL 199
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 171 (65.3 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 56/203 (27%), Positives = 99/203 (48%)
Query: 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRS 332
S+ LF+G +C +E+L+ + +G + D ++ D +++ +RGF F+ FSS +
Sbjct: 17 SEQFRKLFIGGLCSETKEESLRNYYQQWG--KLTDCVVIRDPSSQ-RSRGFGFVIFSSVA 73
Query: 333 DAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRE 392
+ +DA + + V +V + PG K +FV G+ E +R+
Sbjct: 74 E-VDAAMAARPHSIDGRVVASKRVVPREESGKPG--ACVTTKKLFVGGIKEDTTERHLRD 130
Query: 393 LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNK 446
+ YG I IE+ R S ++ FGFVTFD HD + K +IN +A+L + ++
Sbjct: 131 YFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSR 188
Query: 447 AKVRARLSRPLQRGKGKHASRGD 469
++ S +R +G+H GD
Sbjct: 189 QGMQEVQSS--RRRRGRHVGFGD 209
Score = 99 (39.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 37/174 (21%), Positives = 81/174 (46%)
Query: 189 QERRKRKEF-EVFXXXXXXXXXXXXXXXXFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT 247
+++R+ ++F ++F + Q G++T+ ++ +P +++++GF F+ F++
Sbjct: 12 KKKRESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSS 71
Query: 248 VEQARQAVTELKNPVINGKQCG---VTPSQDSDT---------LFLGNICKTWTKEALKE 295
V + A+ + I+G+ V P ++S LF+G I + T+ L++
Sbjct: 72 VAEVDAAMAARPHS-IDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRD 130
Query: 296 KLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
+ YG ++ + ++ S G F F+ F D +D LQK + G
Sbjct: 131 YFERYGT--IDAIEIIRQS---GRKTAFGFVTFDDH-DPVDKIV-LQKYHTING 177
Score = 61 (26.5 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 674 GGAPQYGDAYGDR-MGRSNL 692
GG P YG YGDR G SNL
Sbjct: 261 GGCPGYGGGYGDRGAGYSNL 280
Score = 43 (20.2 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 601 RSTSRGAARRPYVDDGY 617
R S G AR P + DGY
Sbjct: 232 RGGSEGYARGPVLGDGY 248
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 198 (74.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 68/235 (28%), Positives = 113/235 (48%)
Query: 246 ATVEQARQAVTELKNPVINGKQCGVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVD 303
A +++ R+ V + K Q G P + LF+G + T ++L+E + +G
Sbjct: 2 AAIKEERE-VEDYKRKGRRSSQ-GHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT- 58
Query: 304 NVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK-VSFADSF 362
+ D ++ D + +RGF F+ +S + +DA + V V P + VS DS
Sbjct: 59 -LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAAMSARPHKVDGRVVEPKRAVSREDS- 114
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
+ PG + VK +FV G+ +E +RE + YG+I IE+ + S K++ F FVTF
Sbjct: 115 VKPGAHLT--VKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 172
Query: 423 DTHDAA--VTCAK--SIN--NAELGEGDNKAKVRARLS-RPLQRGKGKHASRGDF 470
D HD + K +IN N E+ + +K +++ S R G G RG+F
Sbjct: 173 DDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQTASSQRGRGGGSGNFMGRGNF 227
Score = 129 (50.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 40/144 (27%), Positives = 73/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A++ ++ V+ K+
Sbjct: 53 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSRE 112
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L+E + YG +E + ++ED + G RGFAF
Sbjct: 113 DSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYG--KIETIEVMEDRQS-GKKRGFAF 169
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 170 VTFDDH-DTVDKIV-VQKYHTING 191
Score = 39 (18.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 290 GGGGPGYGNPGG 301
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 196 (74.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 77
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 78 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 135
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 136 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 192
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 193 QEVQSSRSGRG 203
Score = 39 (18.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 269 GGGGPGYGNQGG 280
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 196 (74.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKHHTINGHN-AEVRKALSRQEM 193
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 194 QEVQSSRSGRG 204
Score = 118 (46.6 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 44/175 (25%), Positives = 81/175 (46%)
Query: 189 QERRKRKEF-EVFXXXXXXXXXXXXXXXXFSQVGEVTEVRLMMNPQTKKNKGFAFLRF-- 245
+++R++++F ++F + Q G++T+ +M +P +K+++GF F+ F
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
Query: 246 -ATVEQARQA--------VTELKNPVINGKQCGVTPSQDS-DTLFLGNICKTWTKEALKE 295
A V+ A A V E K V ++ G + + LF+G I + + L++
Sbjct: 72 MAEVDAAMAARPHSIDGRVVEPKRAVAR-EESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 296 KLKHYG-VDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
+ YG +D +E +T G RGF F+ F D +D LQK + G
Sbjct: 131 YFEEYGKIDTIEIIT----DRQSGKKRGFGFVTFDDH-DPVDKIV-LQKHHTING 179
Score = 39 (18.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 270 GGGGPGYGNQGG 281
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 196 (74.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 193
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 194 QEVQSSRSGRG 204
Score = 39 (18.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 270 GGGGPGYGNQGG 281
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 196 (74.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 193
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 194 QEVQSSRSGRG 204
Score = 39 (18.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 270 GGGGPGYGNQGG 281
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 196 (74.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 193
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 194 QEVQSSRSGRG 204
Score = 39 (18.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 270 GGGGPGYGNQGG 281
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 196 (74.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 69/273 (25%), Positives = 136/273 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-D 275
FS VG V +R+ + T+++ G+A++ F + A++A+ + +I GK + SQ D
Sbjct: 30 FSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRD 89
Query: 276 S-------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+ +F+ N+ K+ + L E +G + L+ S+++G ++G+AF+ F
Sbjct: 90 AYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSSKVMSDDQG-SKGYAFVHF 144
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD---EIMAQVK---TVFVDGLP 382
++S A A + + + +L G KV F F + D E+ ++ V++
Sbjct: 145 QNQSAADRAIEEMNGK-LLKG----CKV-FVGRFKNRKDREAELRSKASEFTNVYIKNFG 198
Query: 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN----NA 438
D++R++++ YG+ +++ + S K K FGFV+FD+H+AA + +N N
Sbjct: 199 GDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDING 257
Query: 439 EL---GEGDNKAKVRARLSRPLQRGKGKHASRG 468
+L G K + +A L + ++ K + RG
Sbjct: 258 QLIFVGRAQKKVERQAELKQMFEQLK-RERIRG 289
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 200 (75.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 65/257 (25%), Positives = 118/257 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
F+QVG V+ +R+ + T+++ +A++ + A +A+ L N I GK C + SQ
Sbjct: 30 FNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRD 89
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K +AL + +G N+ +V D N ++GF F+ +
Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG--NILSCKVVTDDGNS--SKGFGFVHY 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDED 388
++ A A ++ ++ + F S + G + VF L D
Sbjct: 146 ETQESADKAIAKVN--GMMINGQKVFVGPFKSSK-ERGQPTEVKFTNVFFKNLSEDVGPD 202
Query: 389 RVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
+++ELL+ YGEIT I + + K K FGF F++ +AA ++ N ++ G K
Sbjct: 203 QLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVEN-ENGKIFHG--KPI 258
Query: 449 VRARLSRPLQR-GKGKH 464
R + ++R + KH
Sbjct: 259 YAGRAQKKIEREAELKH 275
Score = 188 (71.2 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 57/242 (23%), Positives = 110/242 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +++ + +KGF F+ + T E A +A+ ++ +ING++ V P + S
Sbjct: 118 FSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSS 176
Query: 277 D-----------TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
+F N+ + + LKE L+ YG + ++T++ D ++G ++GF F
Sbjct: 177 KERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYG--EITNITIMAD--DKGKSKGFGF 232
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT------VFVD 379
F S A + + + + G +P A I+ E+ +T +++
Sbjct: 233 ANFESAEAAKNVVEN-ENGKIFHG--KPIYAGRAQKKIEREAELKHTFETKYQGVNLYIK 289
Query: 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
+ S D D++RE+ +G IT + ++ + K FGFV + D A +N
Sbjct: 290 NIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRM 349
Query: 440 LG 441
+G
Sbjct: 350 IG 351
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 200 (75.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 61/236 (25%), Positives = 111/236 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-D 275
FS +G V+ +R+ + TK + G+A++ F E R+A+ +L I G+ C + SQ D
Sbjct: 58 FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRD 117
Query: 276 -------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
S +F+ N+ +AL + +G ++ + D N G ++GF F+ F
Sbjct: 118 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKIATDEN--GKSKGFGFVHF 173
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG-DEIMAQVKTVFVDGLPASWDE 387
A +A L +L G + + D +E A ++V + + +
Sbjct: 174 EEEGAAKEAIDALNGM-LLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTD 232
Query: 388 DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL-GE 442
++ +EL +G I L ++ K K FGFV ++ H+ AV +++N++EL GE
Sbjct: 233 EQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGE 287
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 195 (73.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 63/251 (25%), Positives = 110/251 (43%)
Query: 255 VTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDS 314
+T+++ NG ++ +F+G + T + ++E +G + D+ ++ D
Sbjct: 1 MTDVEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFG--EITDIIVMRDP 58
Query: 315 NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG--VDRPAKVSFADSFIDPGDEIMAQ 372
+ +RGF F+ FS +++ A K Q+ ++ G VD V D E
Sbjct: 59 TTK-RSRGFGFVTFSGKTEVDAAMK--QRPHIIDGKTVDPKRAVPRDDK---NRSESNVS 112
Query: 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432
K ++V G+ ED + E YG +TK E+ + + K + FGFVTFD HD+ C
Sbjct: 113 TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
Query: 433 --KS--INN--AELGEG---DNKAKVRARLSRPLQRGKGKHASRGDFXXXXXXXXXXXXX 483
KS +N ++ +G D +K + R + G+ + RG +
Sbjct: 173 LQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGGRSRDGQRGGYNGGGGGGGG---- 228
Query: 484 WGLPSPRSLPG 494
WG P+ R PG
Sbjct: 229 WGGPAQRGGPG 239
Score = 39 (18.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 673 GGGAPQYGDAYGDRMGR 689
GGG YG YG G+
Sbjct: 246 GGGQGGYGGDYGGGWGQ 262
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 60/199 (30%), Positives = 100/199 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 15 LFIGGLSFETTDDSLREHFQKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSC--EEVDAA 69
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ E +R+ + Y
Sbjct: 70 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTGEYNLRDYFEKY 126
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 127 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 186
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG G G+F
Sbjct: 187 AGS---QRGCG--GGSGNF 200
Score = 112 (44.5 bits), Expect = 0.00092, P = 0.00092
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT--VEQARQA--------VTELKNPVINGK 266
F + G +T+ +M +PQTK+++GF F+ ++ V+ A A V E K V +
Sbjct: 33 FQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCARPHKVDGRVVEPKRAV--SR 90
Query: 267 QCGVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
+ V P +F+G I + + L++ + YG +E + ++ED + G RGFA
Sbjct: 91 EDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFA 147
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFG 349
F+ F D +D +QK + G
Sbjct: 148 FVTFDDH-DTVDKIV-VQKYHTING 170
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 195 (73.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 74
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 75 MAARPHTIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 132
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 133 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 189
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 190 QEVQNSRSGRG 200
Score = 39 (18.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 266 GGGGPGYGNQGG 277
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 200 (75.5 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 60/238 (25%), Positives = 114/238 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK-NPVINGKQCGVTPSQ- 274
FS +G+V+ +R+ + +KK+ G+A++ + E +A+ EL NP I G+ C + SQ
Sbjct: 72 FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNP-IEGRPCRIMWSQR 130
Query: 275 ------DSD-TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327
D +F+ N+ +AL + +G + L+ ++ G ++ F F+
Sbjct: 131 DPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----KILSCKVATDEFGQSKCFGFVH 186
Query: 328 FSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLP 382
+ + A A + L R+V G +K F +E+ A ++V +
Sbjct: 187 YETAEAAEAAIENVNGMLLNDREVFVG-KHISKKDRESKF----EEMKANFTNIYVKNID 241
Query: 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
++ E+ +L +G+IT I L ++ K K FGFV F+ H++AV + +N+ E+
Sbjct: 242 LNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEELNDKEI 298
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 194 (73.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 56/191 (29%), Positives = 93/191 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 66
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ YG
Sbjct: 67 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFAEYG 124
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 181
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 182 QEVQSSRSGRG 192
Score = 39 (18.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 258 GGGGPGYGNQGG 269
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 196 (74.1 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 69/273 (25%), Positives = 136/273 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-D 275
FS VG V +R+ + T+++ G+A++ F + A++A+ + +I GK + SQ D
Sbjct: 88 FSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRD 147
Query: 276 S-------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+ +F+ N+ K+ + L E +G + L+ S+++G ++G+AF+ F
Sbjct: 148 AYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSSKVMSDDQG-SKGYAFVHF 202
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD---EIMAQVK---TVFVDGLP 382
++S A A + + + +L G KV F F + D E+ ++ V++
Sbjct: 203 QNQSAADRAIEEMNGK-LLKG----CKV-FVGRFKNRKDREAELRSKASEFTNVYIKNFG 256
Query: 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN----NA 438
D++R++++ YG+ +++ + S K K FGFV+FD+H+AA + +N N
Sbjct: 257 GDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDING 315
Query: 439 EL---GEGDNKAKVRARLSRPLQRGKGKHASRG 468
+L G K + +A L + ++ K + RG
Sbjct: 316 QLIFVGRAQKKVERQAELKQMFEQLK-RERIRG 347
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 194 (73.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 56/191 (29%), Positives = 94/191 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S K++ FGFVTFD HD + G N A+VR LSR +
Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIF--LQKYHTINGHN-AEVRKALSRQEM 193
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 194 QEVQSSRSGRG 204
Score = 39 (18.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 270 GGGGPGYGNQGG 281
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 147 (56.8 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 44/151 (29%), Positives = 74/151 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + A +A++ L + K V+ PS
Sbjct: 54 FSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPS 113
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
DS D L++ + KT T++ ++E YG + LV+ ++ G++RG AF+ F
Sbjct: 114 SDSIKDANLYISGLPKTMTQKDVEEMFGRYG-RIINSRVLVDQAS--GLSRGVAFIRFDK 170
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R++A DA K L + G V FA S
Sbjct: 171 RAEAEDAIKDLNGQKPP-GAAEQMTVKFAAS 200
Score = 91 (37.1 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 436 NNAELGE 442
N LG+
Sbjct: 320 NGYRLGD 326
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 173 (66.0 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 45/126 (35%), Positives = 72/126 (57%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPSQD 275
F VG + E+RLMM+ K N+G+AF+ + +A++AV EL N I G+ GV S D
Sbjct: 91 FEAVGRIYELRLMMDFDGK-NRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVD 149
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
+ LF+G I K +E + E++ + V D+ + + ++ NRGFAF+E+ S A
Sbjct: 150 NCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 208
Query: 336 DAFKRL 341
A ++L
Sbjct: 209 MARRKL 214
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 191 (72.3 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 69/222 (31%), Positives = 103/222 (46%)
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
+A AV+ + +Q P Q LF+G + T E+L+ + +G + D
Sbjct: 12 EAESAVSHRVTAMSKEQQTPREPEQ-LRKLFIGGLSFETTDESLRAHFEQWGT--LTDCV 68
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSD---AMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG 366
++ D N + +RGF F+ +SS + AMDA R K D V+ VS DS PG
Sbjct: 69 VMRDPNTK-RSRGFGFVTYSSVGEVDAAMDA--RPHKVDGR-AVEPKRAVSREDSS-KPG 123
Query: 367 DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426
+ VK +FV G+ DE+ +RE +G+I ++ + S KR+ F F+TFD HD
Sbjct: 124 AH--STVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHD 181
Query: 427 AAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHASRG 468
A I G N +VR LSR + + SRG
Sbjct: 182 AVDRIV--IQKYHTVNGHN-CEVRKALSRE-EMNRVSMNSRG 219
Score = 119 (46.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 38/147 (25%), Positives = 75/147 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS--- 273
F Q G +T+ +M +P TK+++GF F+ +++V + A + + ++G+ V P
Sbjct: 58 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEV-DAAMDARPHKVDGR--AVEPKRAV 114
Query: 274 --QDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
+DS +F+G I + +E L+E +G ++++ ++ + N++ RG
Sbjct: 115 SREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFG--KIDEVNIMTEKNSD-KRRG 171
Query: 323 FAFLEFSSRSDAMDAFKRLQKRDVLFG 349
FAF+ F DA+D +QK + G
Sbjct: 172 FAFITFDDH-DAVDRIV-IQKYHTVNG 196
Score = 44 (20.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 673 GGGAPQYGDAYGDRMGR 689
GGG YG YG GR
Sbjct: 238 GGGGGGYGGGYGGGGGR 254
Score = 40 (19.1 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 673 GGGAPQYGD--AYGDRMG 688
GGG P YG YG G
Sbjct: 277 GGGGPNYGGNRGYGSGGG 294
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 135 (52.6 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 38/151 (25%), Positives = 73/151 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + A +A+ L + K V+ PS
Sbjct: 58 FGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPS 117
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT +++ +++ YG + ++ D G++RG F+ F
Sbjct: 118 SASIRDANLYVSGLPKTMSQKDMEQLFSQYG--RIITSRILVDQVTAGISRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R++A +A K L + L G P V FA++
Sbjct: 176 RNEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
Score = 103 (41.3 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 436 NNAELGE 442
N LG+
Sbjct: 338 NGYRLGD 344
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 190 (71.9 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 56/192 (29%), Positives = 97/192 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G++ T+E+L + +G + D L+ D ++ +R F F+ FSS ++ +DA
Sbjct: 23 LFIGDLSSETTEESLWNYYRQWGY--LTDCVLIRDPASQ-KSRRFGFITFSSMAE-LDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + + P + + G + VK +FV G+ E +R+ + YG
Sbjct: 79 MAARPHFIDGKMVMPKRAVPREDHGKLG--ALITVKKLFVGGITEDMKEHHLRDYFEKYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+I IE+ + S K++ FGF+TFD HD N+ G ++A+VR LSR +
Sbjct: 137 KINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTING---HRAEVRKALSRQ-E 192
Query: 459 RGKGKHA-SRGD 469
R +G+H SRG+
Sbjct: 193 RQEGQHLRSRGE 204
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 195 (73.7 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 59/235 (25%), Positives = 113/235 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A + F +E A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ ++ + L + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ +A A ++K + +F DR V S D E+ A+ K V++ L
Sbjct: 146 ETQEEAERA---IEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N +L
Sbjct: 203 DDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDL 256
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 190 (71.9 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 54/191 (28%), Positives = 93/191 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 79 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
++ IE+ + S K++ FGF TFD HD + G N A+VR LSR +
Sbjct: 137 KVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIV--LQKYHTINGHN-AEVRKALSRQEM 193
Query: 458 QRGKGKHASRG 468
Q + + RG
Sbjct: 194 QEVQSSRSGRG 204
Score = 39 (18.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 270 GGGGPGYGNQGG 281
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 169 (64.5 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 59/199 (29%), Positives = 98/199 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
L +G + T ++L+E + +G + D ++ D E +RGF F+ +S + +DA
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGT--LTDCVVMTDPQTEH-SRGFGFVTYSCVEE-VDAA 56
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 57 MCAWPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 113
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA----KSIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD +IN N E+ + +K ++++
Sbjct: 114 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQEMQS 173
Query: 452 RLSRPLQRGKGKHASRGDF 470
+ P QRG G G+F
Sbjct: 174 --AGP-QRGHG--GGSGNF 187
Score = 112 (44.5 bits), Expect = 0.00065, P = 0.00065
Identities = 34/127 (26%), Positives = 64/127 (50%)
Query: 221 GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC-----GVT 271
G +T+ +M +PQT+ ++GF F+ ++ VE+ A+ ++ V+ K+ V
Sbjct: 23 GTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAWPHKVDGRVVEPKRAVSREDSVK 82
Query: 272 PSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
P +F+G I + + L++ + YG +E + ++ED + G RGFAF+ F
Sbjct: 83 PGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAFVTFD 139
Query: 330 SRSDAMD 336
D +D
Sbjct: 140 DH-DTVD 145
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 169 (64.5 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 57/197 (28%), Positives = 99/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 9 LFIGGLSFKTTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 64
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV +E +R+ + Y
Sbjct: 65 MNARPHKVDGRVVEPKRAVSREDSR-RPGAHLT--VKKIFVG---EDTEEHHLRDYFEQY 118
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 119 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 178
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + RG
Sbjct: 179 ASSS--QRGRSGQSGRG 193
Score = 111 (44.1 bits), Expect = 0.00084, P = 0.00084
Identities = 42/144 (29%), Positives = 74/144 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD- 275
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ + V +G+ V P +
Sbjct: 27 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV-DGRV--VEPKRAV 83
Query: 276 --SDTLFLG---NICKTW----TKEA-LKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
D+ G + K + T+E L++ + YG +E + ++ D + G RGFAF
Sbjct: 84 SREDSRRPGAHLTVKKIFVGEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGFAF 140
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D++D +QK + G
Sbjct: 141 VTFDDH-DSVDKIV-IQKYHTVNG 162
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 188 (71.2 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 74/271 (27%), Positives = 117/271 (43%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
F G + R+ +P T+ G+ ++ F A A+ + +INGK + SQ
Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
D L F+ N+ K+ AL +G N+ +V D N ++G+A++ F
Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNG---SKGYAYVHF 152
Query: 329 SSRSDAMDAF-----KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
S + A A RL R V G + + A+ + D A VFV
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--VRTRDR--ATFTNVFVKNFGN 208
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA-----KSINNA 438
D+++++E+ YG +++ R+ S K K FGFV ++TH+AA KSIN
Sbjct: 209 DMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGK 267
Query: 439 EL--GEGDNKAKVRARLSRPLQRGKGKHASR 467
L G K + A L R +R + K SR
Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLRLKEKSR 298
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 185 (70.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 70
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 71 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 127
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 128 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 187
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 188 AGS---QRGRG--GGSGNF 201
Score = 124 (48.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 33 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 92
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 93 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 149
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 150 VTFDDH-DTVDKIV-VQKYHTING 171
Score = 39 (18.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 234 GGGGPGYGNQGG 245
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 50/166 (30%), Positives = 80/166 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E H+ D + D ++ D E +RGF F+ S + +DA
Sbjct: 15 LFIGGLSFETTDDSLRE---HFKWDTLTDCVVMRDPQTE-RSRGFGFVY--SCVEEVDAA 68
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ V V P + + + PG +M VK +FV G+ +E +R+ + YG
Sbjct: 69 MCARPHKVDGHVVEPKRAISREDSVKPGAHLM--VKKIFVGGIKEDTEEYNLRDYFE-YG 125
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444
I IE+ + S K++ F F+TFD HD T K + G GD
Sbjct: 126 NIKTIEVVEDRQSGKKRGFAFLTFDDHD---TVDKIVGRGG-GSGD 167
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 185 (70.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 92
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 210 AGS---QRGRG--GGSGNF 223
Score = 124 (48.7 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 55 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 114
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 171
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 172 VTFDDH-DTVDKIV-VQKYHTING 193
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 180 (68.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 176 (67.0 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 59/195 (30%), Positives = 92/195 (47%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G TL + N +RGF FL +S + +DA
Sbjct: 34 LFIGGLSFETTDDSLREHFEKWG-------TLTDCGNKR--SRGFGFLTYSCVEE-VDAA 83
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ V VS DS + PG +M VK ++V G+ +E +R K YG
Sbjct: 84 VCARPHKAAVRVVGKRAVSREDS-VKPGAHLM--VKKLYVGGIKEDTEEYNLRGYFKKYG 140
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+I IE+ S K++ F FVTFD HD T K + G+N +V LS+ +Q
Sbjct: 141 KIETIEVMEGRQSGKKRGFAFVTFDDHD---TVDKILQKHHAINGNN-CEVGKVLSKEMQ 196
Query: 459 RG---KGKHASRGDF 470
+G+ + G+F
Sbjct: 197 SAGSQRGRGGASGNF 211
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 188 (71.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + +TW+++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 11 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINILRDRSQNPPQSKGCCFVTFYT 68
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L VL G+ P ++ ADS + + + + + +F+ + E+ +
Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCTENDI 124
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + ++G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 125 RVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEG 176
Score = 137 (53.3 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N V+ G Q
Sbjct: 36 FEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 95
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K T+ ++ +G +E+ ++ +G++RG A
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCA 151
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + MAQ
Sbjct: 152 FVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 72 (30.4 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 463 NGFQIGM--KRLKVQLKRSK 480
Score = 41 (19.5 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G VP T E +++E ++Y
Sbjct: 21 GQVPRTWSEKDLRELFEQY 39
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 188 (71.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + +TW+++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 11 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINILRDRSQNPPQSKGCCFVTFYT 68
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L VL G+ P ++ ADS + + + + + +F+ + E+ +
Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCTENDI 124
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + ++G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 125 RVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEG 176
Score = 137 (53.3 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N V+ G Q
Sbjct: 36 FEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 95
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K T+ ++ +G +E+ ++ +G++RG A
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCA 151
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + MAQ
Sbjct: 152 FVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 72 (30.4 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 464 NGFQIGM--KRLKVQLKRSK 481
Score = 41 (19.5 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G VP T E +++E ++Y
Sbjct: 21 GQVPRTWSEKDLRELFEQY 39
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 188 (71.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + +TW+++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 11 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINILRDRSQNPPQSKGCCFVTFYT 68
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L VL G+ P ++ ADS + + + + + +F+ + E+ +
Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCTENDI 124
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + ++G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 125 RVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEG 176
Score = 137 (53.3 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N V+ G Q
Sbjct: 36 FEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 95
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K T+ ++ +G +E+ ++ +G++RG A
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCA 151
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + MAQ
Sbjct: 152 FVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 72 (30.4 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 464 NGFQIGM--KRLKVQLKRSK 481
Score = 41 (19.5 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G VP T E +++E ++Y
Sbjct: 21 GQVPRTWSEKDLRELFEQY 39
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 171 (65.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 55/198 (27%), Positives = 95/198 (47%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G T E+L+ K G+ + D ++ D N + +RGF F+ +++ + +D
Sbjct: 16 LFIGGWSFETTDESLRSHFKQRGI--LTDCVVMRDPNTK-RSRGFGFVTYTAVEE-VDPA 71
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ V V P + S + PG + VK +F G+ +E +R+ + YG
Sbjct: 72 MHARPHKVDGRVVEPKRTSSKEDSQRPGAHLT--VKKIFAGGIKEDTEEHHLRDYFEQYG 129
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVR-A 451
+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ A
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQEMASA 189
Query: 452 RLSRPLQRGKGKHAS-RG 468
S+ Q G G RG
Sbjct: 190 SCSQRGQSGSGNFGGFRG 207
Score = 113 (44.8 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 38/146 (26%), Positives = 71/146 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ + VE+ A+ ++ V+ K+ +
Sbjct: 34 FKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVDGRVVEPKR--TSS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 KEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
Score = 53 (23.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 20/72 (27%), Positives = 28/72 (38%)
Query: 575 GSRVVPDRRPYRD--EYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPPSYREGR 632
GS RR + D Y ++ S M G + PY G Q F +P G
Sbjct: 251 GSNFGGGRR-HNDFGNYNNQSSNVGPMKGRNFGGRSSGPYGGGGKGQYFAKPRNQGGYGS 309
Query: 633 ARDYETVSGSKR 644
+ + SGS+R
Sbjct: 310 SSSSSSYSGSRR 321
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 185 (70.2 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 92
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 210 AGS---QRGRG--GGSGNF 223
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 55 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 114
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 171
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 172 VTFDDH-DTVDKIV-VQKYHTING 193
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 185 (70.2 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 74/271 (27%), Positives = 118/271 (43%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
F G + R+ +P T+ G+ ++ F A A+ + +INGK + SQ
Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
D L F+ N+ K+ AL +G ++ +V D N ++G+A++ F
Sbjct: 98 DRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFG--SILSCKVVCDDNG---SKGYAYVHF 152
Query: 329 SSRSDAMDAF-----KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
S + A A RL R V G + + A+ + D+ A VFV
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--VRTRDK--ATFTNVFVKNFGD 208
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA-----KSINNA 438
D+D+++EL YG +++ R+ S K K FGFV ++TH+AA KSI+
Sbjct: 209 DMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 439 EL--GEGDNKAKVRARLSRPLQRGKGKHASR 467
L G K + A L R +R + K SR
Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLRLKEKSR 298
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 187 (70.9 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 52/176 (29%), Positives = 96/176 (54%)
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSSRSDA 334
S LF+G I K++ +E +K + + N+E ++L+++ + NE +G AF+ SR +A
Sbjct: 2 STKLFVGQIPKSFNEEEIKNLFTN--IANIESVSLIKNKTTNEP--QGCAFVSVPSREEA 57
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
A ++L GV +V +ADS E +A +FV LP S++E+++REL
Sbjct: 58 DRAIEQLHNSKKFQGVLNNLQVKYADS----EQEKLAS--KLFVGMLPRSYEEEQIRELF 111
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450
+ +G + I + R P+++ K GF+ FD ++A++ ++N +L N V+
Sbjct: 112 EPHGVVEDICILRG-PNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVK 166
Score = 154 (59.3 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 43/153 (28%), Positives = 79/153 (51%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-----VINGKQCGVT 271
F+ + + V L+ N T + +G AF+ + E+A +A+ +L N V+N Q
Sbjct: 23 FTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQLHNSKKFQGVLNNLQVKYA 82
Query: 272 PSQD---SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
S+ + LF+G + +++ +E ++E + +GV VED+ ++ N+E ++G F++F
Sbjct: 83 DSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV--VEDICILRGPNSE--SKGCGFIKF 138
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
+R A+ A L L G P V FAD+
Sbjct: 139 DNRESALSAIATLNGMK-LDGSPNPLVVKFADT 170
Score = 65 (27.9 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431
Q +FV +P + ++ + L + YG + ++ + + K FGFV++D + A+
Sbjct: 401 QGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYD-NPASANL 459
Query: 432 AKSINNAELGEGDNKAKV 449
A S + ++ G K KV
Sbjct: 460 AISNLHGQMMAG-KKLKV 476
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 185 (70.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 70
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 71 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 127
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 128 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 187
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 188 AGS---QRGRG--GGSGNF 201
Score = 124 (48.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 33 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 92
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 93 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 149
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 150 VTFDDH-DTVDKIV-VQKYHTING 171
Score = 39 (18.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 268 GGGGPGYGNQGG 279
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 125 (49.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 37/151 (24%), Positives = 74/151 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +G++ +L+ + T ++ G+ F+ ++ A +A+ L + K V+ PS
Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT +++ +++ YG + L++ + G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMSQKEMEQLFSQYG-RIITSRILLDQAT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + L G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
Score = 118 (46.6 bits), Expect = 0.00054, P = 0.00054
Identities = 44/184 (23%), Positives = 75/184 (40%)
Query: 264 NGKQCGVT-PSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
NG G + DS T L + + + T++ K G ++E LV D G +
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG--DIESCKLVRDKIT-GQSL 80
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+ F+ +S +DA A L + + KVS+A P + ++V GL
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQ---TKTIKVSYAR----PSSASIRDAN-LYVSGL 132
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-L 440
P + + + +L YG I + + + + GF+ FD A K +N + L
Sbjct: 133 PKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL 192
Query: 441 GEGD 444
G +
Sbjct: 193 GAAE 196
Score = 106 (42.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 436 NNAELGE 442
N LGE
Sbjct: 346 NGYRLGE 352
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 125 (49.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 37/151 (24%), Positives = 74/151 (49%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +G++ +L+ + T ++ G+ F+ ++ A +A+ L + K V+ PS
Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT +++ +++ YG + L++ + G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMSQKEMEQLFSQYG-RIITSRILLDQAT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + L G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
Score = 118 (46.6 bits), Expect = 0.00054, P = 0.00054
Identities = 44/184 (23%), Positives = 75/184 (40%)
Query: 264 NGKQCGVT-PSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
NG G + DS T L + + + T++ K G ++E LV D G +
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG--DIESCKLVRDKIT-GQSL 80
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+ F+ +S +DA A L + + KVS+A P + ++V GL
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQ---TKTIKVSYAR----PSSASIRDAN-LYVSGL 132
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-L 440
P + + + +L YG I + + + + GF+ FD A K +N + L
Sbjct: 133 PKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL 192
Query: 441 GEGD 444
G +
Sbjct: 193 GAAE 196
Score = 106 (42.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 436 NNAELGE 442
N LGE
Sbjct: 346 NGYRLGE 352
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 125 (49.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 38/151 (25%), Positives = 73/151 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +G++ +L+ + T ++ G+ F+ ++ A +A+ L + K V+ PS
Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT +++ +++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMSQKEMEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + L G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 44/184 (23%), Positives = 75/184 (40%)
Query: 264 NGKQCGVT-PSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
NG G + DS T L + + + T++ K G ++E LV D G +
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG--DIESCKLVRDKIT-GQSL 80
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+ F+ +S +DA A L + + KVS+A P + ++V GL
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQ---TKTIKVSYAR----PSSASIRDAN-LYVSGL 132
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-L 440
P + + + +L YG I + + + + GF+ FD A K +N + L
Sbjct: 133 PKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL 192
Query: 441 GEGD 444
G +
Sbjct: 193 GAAE 196
Score = 106 (42.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 436 NNAELGE 442
N LGE
Sbjct: 346 NGYRLGE 352
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 125 (49.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 38/151 (25%), Positives = 73/151 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +G++ +L+ + T ++ G+ F+ ++ A +A+ L + K V+ PS
Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT +++ +++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMSQKEMEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + L G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 44/184 (23%), Positives = 75/184 (40%)
Query: 264 NGKQCGVT-PSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
NG G + DS T L + + + T++ K G ++E LV D G +
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG--DIESCKLVRDKIT-GQSL 80
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+ F+ +S +DA A L + + KVS+A P + ++V GL
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQ---TKTIKVSYAR----PSSASIRDAN-LYVSGL 132
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-L 440
P + + + +L YG I + + + + GF+ FD A K +N + L
Sbjct: 133 PKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL 192
Query: 441 GEGD 444
G +
Sbjct: 193 GAAE 196
Score = 106 (42.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 436 NNAELGE 442
N LGE
Sbjct: 346 NGYRLGE 352
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 125 (49.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 38/151 (25%), Positives = 73/151 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +G++ +L+ + T ++ G+ F+ ++ A +A+ L + K V+ PS
Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT +++ +++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMSQKEMEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + L G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 44/184 (23%), Positives = 75/184 (40%)
Query: 264 NGKQCGVT-PSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
NG G + DS T L + + + T++ K G ++E LV D G +
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG--DIESCKLVRDKIT-GQSL 80
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+ F+ +S +DA A L + + KVS+A P + ++V GL
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQ---TKTIKVSYAR----PSSASIRDAN-LYVSGL 132
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-L 440
P + + + +L YG I + + + + GF+ FD A K +N + L
Sbjct: 133 PKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL 192
Query: 441 GEGD 444
G +
Sbjct: 193 GAAE 196
Score = 106 (42.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 436 NNAELGE 442
N LGE
Sbjct: 346 NGYRLGE 352
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 125 (49.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 38/151 (25%), Positives = 73/151 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +G++ +L+ + T ++ G+ F+ ++ A +A+ L + K V+ PS
Sbjct: 59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT +++ +++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMSQKEMEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + L G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPL-GAAEPITVKFANN 205
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 44/184 (23%), Positives = 75/184 (40%)
Query: 264 NGKQCGVT-PSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
NG G + DS T L + + + T++ K G ++E LV D G +
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG--DIESCKLVRDKIT-GQSL 80
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+ F+ +S +DA A L + + KVS+A P + ++V GL
Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQ---TKTIKVSYAR----PSSASIRDAN-LYVSGL 132
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-L 440
P + + + +L YG I + + + + GF+ FD A K +N + L
Sbjct: 133 PKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL 192
Query: 441 GEGD 444
G +
Sbjct: 193 GAAE 196
Score = 106 (42.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 436 NNAELGE 442
N LGE
Sbjct: 347 NGYRLGE 353
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 176 (67.0 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 59/195 (30%), Positives = 92/195 (47%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G TL + N +RGF FL +S + +DA
Sbjct: 4 LFIGGLSFETTDDSLREHFEKWG-------TLTDCGNKR--SRGFGFLTYSCVEE-VDAA 53
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ V VS DS + PG +M VK ++V G+ +E +R K YG
Sbjct: 54 VCARPHKAAVRVVGKRAVSREDS-VKPGAHLM--VKKLYVGGIKEDTEEYNLRGYFKKYG 110
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+I IE+ S K++ F FVTFD HD T K + G+N +V LS+ +Q
Sbjct: 111 KIETIEVMEGRQSGKKRGFAFVTFDDHD---TVDKILQKHHAINGNN-CEVGKVLSKEMQ 166
Query: 459 RG---KGKHASRGDF 470
+G+ + G+F
Sbjct: 167 SAGSQRGRGGASGNF 181
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 186 (70.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + +TW+++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 11 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L VL G+ P ++ ADS + + + + + +F+ + E+ +
Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCTENDI 124
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + ++G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 125 RVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 176
Score = 136 (52.9 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N V+ G Q
Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 95
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K T+ ++ +G +E+ ++ +G++RG A
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCA 151
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + MAQ
Sbjct: 152 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 72 (30.4 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 463 NGFQIGM--KRLKVQLKRSK 480
Score = 41 (19.5 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G VP T E +++E ++Y
Sbjct: 21 GQVPRTWSEKDLRELFEQY 39
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 186 (70.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + +TW+++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 11 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L VL G+ P ++ ADS + + + + + +F+ + E+ +
Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCTENDI 124
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + ++G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 125 RVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 176
Score = 136 (52.9 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N V+ G Q
Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 95
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K T+ ++ +G +E+ ++ +G++RG A
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCA 151
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + MAQ
Sbjct: 152 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 199
Score = 72 (30.4 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 463 NGFQIGM--KRLKVQLKRSK 480
Score = 41 (19.5 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G VP T E +++E ++Y
Sbjct: 21 GQVPRTWSEKDLRELFEQY 39
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 164 (62.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G D ++ D + +R F F+ S +DA
Sbjct: 20 LFIGCLSFETTDDSLREHFEKWGT---LDCVVMRDLQIK-RSRSFGFVSTYSCVKEVDAA 75
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 76 MCARPHKVDGHVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 132
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457
G+I IE+ + S K++ F FVTFD HD T K + G N +V+ +S+
Sbjct: 133 GKIEIIEVMEDRQSGKKRGFAFVTFDDHD---TVDKIVQKYHTINGHNY-EVKKAVSKQE 188
Query: 458 QRGKGKHASRG 468
+ G RG
Sbjct: 189 MQSAGSQRGRG 199
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 186 (70.5 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + +TW+++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 38 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRSQNPPQSKGCCFVTFYT 95
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L VL G+ P ++ ADS + + + + + +F+ + E+ +
Sbjct: 96 RKAALEAQNALHNMKVLPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCTENDI 151
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + ++G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 152 RVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 203
Score = 136 (52.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N V+ G Q
Sbjct: 63 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 122
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K T+ ++ +G +E+ ++ +G++RG A
Sbjct: 123 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCA 178
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + MAQ
Sbjct: 179 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 226
Score = 72 (30.4 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 490 NGFQIGM--KRLKVQLKRSK 507
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G VP T E +++E ++Y
Sbjct: 48 GQVPRTWSEKDLRELFEQY 66
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 186 (70.5 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 46/173 (26%), Positives = 90/173 (52%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + +TW+++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 38 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRSQNPPQSKGCCFVTFYT 95
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L VL G+ P ++ ADS + + + + + +F+ + E+ +
Sbjct: 96 RKAALEAQNALHNMKVLPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCTENDI 151
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + ++G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 152 RVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 203
Score = 136 (52.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N V+ G Q
Sbjct: 63 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 122
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K T+ ++ +G +E+ ++ +G++RG A
Sbjct: 123 PADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCA 178
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + MAQ
Sbjct: 179 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQ 226
Score = 72 (30.4 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 431 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 490
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 491 NGFQIGM--KRLKVQLKRSK 508
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G VP T E +++E ++Y
Sbjct: 48 GQVPRTWSEKDLRELFEQY 66
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 180 (68.4 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 185 (70.2 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 92
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 210 AGS---QRGRG--GGSGNF 223
Score = 124 (48.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 55 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 114
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 171
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 172 VTFDDH-DTVDKIV-VQKYHTING 193
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 289 GGGGPGYGNQGG 300
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 185 (70.2 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 92
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 210 AGS---QRGRG--GGSGNF 223
Score = 124 (48.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 55 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 114
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 171
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 172 VTFDDH-DTVDKIV-VQKYHTING 193
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 290 GGGGPGYGNQGG 301
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 185 (70.2 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 92
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 210 AGS---QRGRG--GGSGNF 223
Score = 124 (48.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 55 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 114
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 171
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 172 VTFDDH-DTVDKIV-VQKYHTING 193
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 290 GGGGPGYGNQGG 301
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 185 (70.2 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T ++L+E + +G + D ++ D + +RGF F+ +S + +DA
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGT--LTDCVVMRDPQTK-RSRGFGFVTYSCVEE-VDAA 92
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD + K +IN N E+ + +K ++++
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+G G+F
Sbjct: 210 AGS---QRGRG--GGSGNF 223
Score = 124 (48.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 39/144 (27%), Positives = 72/144 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC---- 268
F + G +T+ +M +PQTK+++GF F+ ++ VE+ A+ ++ V+ K+
Sbjct: 55 FEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRE 114
Query: 269 -GVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
V P +F+G I + + L++ + YG +E + ++ED + G RGFAF
Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG--KIETIEVMEDRQS-GKKRGFAF 171
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFG 349
+ F D +D +QK + G
Sbjct: 172 VTFDDH-DTVDKIV-VQKYHTING 193
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 290 GGGGPGYGNQGG 301
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 180 (68.4 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+L+ + +G + D ++ D ++ +RGF F+ FSS ++ +D
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASK-RSRGFGFVTFSSMAE-VDVA 66
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + PG + VK +FV G+ +E +R+ + YG
Sbjct: 67 MAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVGGIKEDTEEHHLRDYFEEYG 124
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP-L 457
+I IE+ + S KR FGFVTFD HD + G N A+VR LSR +
Sbjct: 125 KIDTIEIITDRQSGKR-GFGFVTFDDHDPVDKIV--LQKYHTKNGHN-AEVRKALSRQEM 180
Query: 458 QRGKGKHASR 467
Q + + R
Sbjct: 181 QEVQNSRSGR 190
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 257 GGGGPGYGNQGG 268
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 180 (68.4 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 180 (68.4 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 128 (50.1 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 205
Score = 100 (40.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 436 NNAELGE 442
N LG+
Sbjct: 325 NGYRLGD 331
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 182 (69.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 59/191 (30%), Positives = 93/191 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G+ + D +V D N + +RGF F+ +++ + A
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGM--LTDC-VVMDPNTK-RSRGFGFVTYTTVEEVDAAM 80
Query: 339 K-RLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
R QK D V+ VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 81 NARPQKMDGRV-VEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 136
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457
G+I IE+ + S K++ F FVTFD HD+ I G G N +VR LS+
Sbjct: 137 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV--IQKYHTGNGHN-CEVRKALSKQ- 192
Query: 458 QRGKGKHASRG 468
+ + RG
Sbjct: 193 EMASASSSQRG 203
Score = 37 (18.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 585 YRD--EYTSRGSGYPDMPRSTSRGAARRPYVDDGYAQRFERPPPSYREGR 632
Y D Y ++ S + M G + PY D SY GR
Sbjct: 268 YNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGDGEGGYGGSSSSSSYGSGR 317
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 133 (51.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + T + A +A+ L + K V+ PS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 274 QD--SDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ D L++ + +T T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 100 SEVIKDANLYISGLPRTMTQKDVEDMFSRFG-RIINSRVLVDQTT--GLSRGVAFIRFDK 156
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 157 RSEAEEAITSFNGHKPP-GSSEPITVKFA 184
Score = 93 (37.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 436 NNAELGE 442
N LG+
Sbjct: 306 NGYRLGD 312
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 180 (68.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 180 (68.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 180 (68.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 180 (68.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 180 (68.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 180 (68.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 128 (50.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 205
Score = 100 (40.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 436 NNAELGE 442
N LG+
Sbjct: 338 NGYRLGD 344
Score = 66 (28.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ ++ L + ++ + L ++ + + +DN+
Sbjct: 205 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 242
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 205
Score = 100 (40.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 436 NNAELGE 442
N LG+
Sbjct: 338 NGYRLGD 344
Score = 66 (28.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ ++ L + ++ + L ++ + + +DN+
Sbjct: 205 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 242
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 205
Score = 100 (40.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 436 NNAELGE 442
N LG+
Sbjct: 338 NGYRLGD 344
Score = 66 (28.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ ++ L + ++ + L ++ + + +DN+
Sbjct: 205 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 242
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 128 (50.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 205
Score = 100 (40.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 436 NNAELGE 442
N LG+
Sbjct: 339 NGYRLGD 345
Score = 66 (28.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 204
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ ++ L + ++ + L ++ + + +DN+
Sbjct: 205 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 242
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 182 (69.1 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 74/271 (27%), Positives = 118/271 (43%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
F G + R+ +P T+ G+ ++ F A A+ + +INGK + SQ
Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
D L F+ N+ K+ AL +G N+ +V D N ++G+A++ F
Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNG---SKGYAYVHF 152
Query: 329 SSRSDAMDAF-----KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
S + A A RL R V G + + A+ + D A VFV +
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--VRTRDR--ATFTNVFVKNIGD 208
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA-----KSINNA 438
D+++++EL YG +++ R+ S K K FGFV ++TH+AA KSI+
Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
Query: 439 EL--GEGDNKAKVRARLSRPLQRGKGKHASR 467
L G K + A L R +R + K SR
Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLRLKEKSR 298
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 133 (51.9 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + T + A +A+ L + K V+ PS
Sbjct: 48 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 107
Query: 274 QD--SDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ D L++ + +T T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 108 SEVIKDANLYISGLPRTMTQKDVEDMFSRFG-RIINSRVLVDQTT--GLSRGVAFIRFDK 164
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 165 RSEAEEAITSFNGHKPP-GSSEPITVKFA 192
Score = 93 (37.8 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 436 NNAELGE 442
N LG+
Sbjct: 314 NGYRLGD 320
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 180 (68.4 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 184 (69.8 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 268 CGVTPSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAF 325
C P +D D LF+G I + ++ L+ + +G + +LT+++D GM++G AF
Sbjct: 36 CATIPMKDHDAIKLFIGQIPRNLDEKDLRPLFEEFG--KIYELTVLKDRFT-GMHKGCAF 92
Query: 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW 385
L + +R A+ A L ++ L G++RP +V ADS E + + +FV L
Sbjct: 93 LTYCARESALKAQTALHEQKTLPGMNRPIQVKPADS------ESRGEDRKLFVGMLNKQQ 146
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445
ED VR L +++G I + + R P K FV + TH A +++ ++ G +
Sbjct: 147 CEDDVRRLFESFGSIEECTILRG-PDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGAS 205
Query: 446 KAKV 449
+ V
Sbjct: 206 SSLV 209
Score = 123 (48.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 40/155 (25%), Positives = 79/155 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN----PVINGKQCGVTP 272
F + G++ E+ ++ + T +KG AFL + E A +A T L P +N + V P
Sbjct: 67 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMN-RPIQVKP 125
Query: 273 SQDSDT------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
+ DS++ LF+G + K ++ ++ + +G ++E+ T++ +G ++G AF+
Sbjct: 126 A-DSESRGEDRKLFVGMLNKQQCEDDVRRLFESFG--SIEECTILRGP--DGNSKGCAFV 180
Query: 327 EFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
++S+ ++A A L + G V FAD+
Sbjct: 181 KYSTHAEAQAAISALHGSQTMPGASSSLVVKFADT 215
Score = 81 (33.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 18/81 (22%), Positives = 42/81 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + + K FGFV+FD +A +S+
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 496
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 497 NGFQIG----MKRLKVQLKRP 513
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 128 (50.1 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 87 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 146
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 147 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 203
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 204 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 233
Score = 100 (40.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 436 NNAELGE 442
N LG+
Sbjct: 366 NGYRLGD 372
Score = 66 (28.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 173 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 232
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ ++ L + ++ + L ++ + + +DN+
Sbjct: 233 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 270
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 153 (58.9 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 53/196 (27%), Positives = 91/196 (46%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE-DSNNEGMNRGFAFLEFSSRSD 333
+S TL L N+ + T+E L+E E T ++ N G ++G+AF+EF+S D
Sbjct: 109 ESKTLVLSNLSYSATEETLQEVF--------EKATFIKVPQNQNGKSKGYAFIEFASFED 160
Query: 334 AMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVREL 393
A +A KR++ R ++ P KT+FV GL ED E
Sbjct: 161 AKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDTTEET 212
Query: 394 LK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452
LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ KV
Sbjct: 213 LKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---KVTLD 268
Query: 453 LSRPLQRGKGKHASRG 468
++P +G+G RG
Sbjct: 269 WAKP--KGEGGFGGRG 282
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 39/135 (28%), Positives = 68/135 (50%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV-------TP-- 272
+ T +++ N Q K+KG+AF+ FA+ E A++A+ I G+ + +P
Sbjct: 133 KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNA 191
Query: 273 -SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331
SQ S TLF+ + + T+E LKE D +V D G ++GF F++F+S
Sbjct: 192 RSQPSKTLFVKGLSEDTTEETLKESF-----DGSVRARIVTDRET-GSSKGFGFVDFNSE 245
Query: 332 SDAMDAFKRLQKRDV 346
DA A + ++ ++
Sbjct: 246 EDAKAAKEAMEDGEI 260
Score = 67 (28.6 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + E + I+G+ + T + +
Sbjct: 16 DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQD 73
Query: 280 FLGNICKTWTKEALK 294
+ G TW+ ++ K
Sbjct: 74 YRGGKNSTWSDDSRK 88
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 128 (50.1 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 87 FGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPS 146
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ GM+RG F+ F
Sbjct: 147 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GMSRGVGFIRFDK 203
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + + P V FA++
Sbjct: 204 RIEAEEAIKGLNGQKPPAATE-PITVKFANN 233
Score = 118 (46.6 bits), Expect = 0.00059, P = 0.00059
Identities = 44/189 (23%), Positives = 76/189 (40%)
Query: 254 AVTELKNPVINGKQCGVTPSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
A+ +P+ +G ++DS T L + + ++ T+E LK G +E LV
Sbjct: 49 AINNCSSPIDSGN------TEDSKTNLIVNYLPQSMTQEELKSLFGSIG--EIESCKLVR 100
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFADSFIDPGD 367
D G + G+ F+ + DA A RLQ + + RP+ S D+
Sbjct: 101 DKIT-GQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA------ 153
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
++V GLP + + + +L YG I + + + + GF+ FD
Sbjct: 154 -------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIE 206
Query: 428 AVTCAKSIN 436
A K +N
Sbjct: 207 AEEAIKGLN 215
Score = 100 (40.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 436 NNAELGE 442
N LG+
Sbjct: 367 NGYRLGD 373
Score = 64 (27.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FSQ G + R++++ T ++G F+RF +A +A+ L NG++ + +
Sbjct: 173 FSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL-----NGQK--PPAATEP 225
Query: 277 DTLFLGNICKTWTKEALKEKLKH 299
T+ N T +A+ +L H
Sbjct: 226 ITVKFANNPSQKTNQAILSQLYH 248
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 128 (50.1 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 88 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 147
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 148 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 204
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 205 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 234
Score = 100 (40.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 436 NNAELGE 442
N LG+
Sbjct: 368 NGYRLGD 374
Score = 66 (28.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 174 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ ++ L + ++ + L ++ + + +DN+
Sbjct: 234 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 271
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 128 (50.1 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 88 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 147
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 148 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GISRGVGFIRFDK 204
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 205 RIEAEEAIKGLNGQKPP-GATEPITVKFANN 234
Score = 100 (40.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 436 NNAELGE 442
N LG+
Sbjct: 367 NGYRLGD 373
Score = 66 (28.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 174 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ ++ L + ++ + L ++ + + +DN+
Sbjct: 234 NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 271
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 129 (50.5 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 125
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 182
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 183 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 212
Score = 98 (39.6 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 29/103 (28%), Positives = 47/103 (45%)
Query: 345 DVLFGVDR--PAKVSFADSFIDPGDEIMAQVKT---VFVDGLPASWDEDRVRELLKNYGE 399
++ +GV R P + S + G I T +FV L DE + +L +G
Sbjct: 251 NMAYGVKRFSPITIDGMTSLV--GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 308
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+ +++ R+ + K K FGFVT +D A S+N LG+
Sbjct: 309 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 351
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 249
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 129 (50.5 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 125
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 182
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 183 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 212
Score = 98 (39.6 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 29/103 (28%), Positives = 47/103 (45%)
Query: 345 DVLFGVDR--PAKVSFADSFIDPGDEIMAQVKT---VFVDGLPASWDEDRVRELLKNYGE 399
++ +GV R P + S + G I T +FV L DE + +L +G
Sbjct: 251 NMAYGVKRFSPITIDGMTSLV--GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 308
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+ +++ R+ + K K FGFVT +D A S+N LG+
Sbjct: 309 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 351
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 249
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 133 (51.9 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + T + A +A+ L + K V+ PS
Sbjct: 67 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 126
Query: 274 QD--SDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ D L++ + +T T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 127 SEVIKDANLYISGLPRTMTQKDVEDMFSRFG-RIINSRVLVDQTT--GLSRGVAFIRFDK 183
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 184 RSEAEEAITSFNGHKPP-GSSEPITVKFA 211
Score = 93 (37.8 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 436 NNAELGE 442
N LG+
Sbjct: 333 NGYRLGD 339
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 129 (50.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 71 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 130
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 131 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 187
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 188 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 217
Score = 98 (39.6 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 29/103 (28%), Positives = 47/103 (45%)
Query: 345 DVLFGVDR--PAKVSFADSFIDPGDEIMAQVKT---VFVDGLPASWDEDRVRELLKNYGE 399
++ +GV R P + S + G I T +FV L DE + +L +G
Sbjct: 256 NMAYGVKRFSPITIDGMTSLV--GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 313
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+ +++ R+ + K K FGFVT +D A S+N LG+
Sbjct: 314 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 356
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 217 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 254
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 129 (50.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 71 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 130
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 131 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 187
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 188 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 217
Score = 98 (39.6 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 29/103 (28%), Positives = 47/103 (45%)
Query: 345 DVLFGVDR--PAKVSFADSFIDPGDEIMAQVKT---VFVDGLPASWDEDRVRELLKNYGE 399
++ +GV R P + S + G I T +FV L DE + +L +G
Sbjct: 256 NMAYGVKRFSPITIDGMTSLV--GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 313
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+ +++ R+ + K K FGFVT +D A S+N LG+
Sbjct: 314 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 356
Score = 67 (28.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ + L + ++ + L + + + +DN+
Sbjct: 217 NPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 254
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 129 (50.5 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 64 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 123
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 124 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 180
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 181 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 210
Score = 97 (39.2 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 436 NNAELGE 442
N LG+
Sbjct: 330 NGYRLGD 336
Score = 67 (28.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 150 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 209
Query: 272 -PSQDSDTLFLGNI 284
PSQ S L +
Sbjct: 210 NPSQKSSQALLSQL 223
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 190 (71.9 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 65/269 (24%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R++EL +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 190 (71.9 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 65/269 (24%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R++EL +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 180 (68.4 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 63/258 (24%), Positives = 117/258 (45%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + + E + I+G+ + T + +
Sbjct: 69 DAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD 126
Query: 280 FLGNICKTWTKEA---LKEKLKHYGVDNV-----EDLTLVE-DSNNEGMNRGFAFLEFSS 330
F G TW+ E+ + L + + E T ++ N G ++G+AF+EF+S
Sbjct: 127 FRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS 186
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA +A KR++ R ++ P KT+FV GL E+ +
Sbjct: 187 FEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGLSEETTEETL 242
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450
+E G I + + + + K FGFV F++ + A +++ + E+ +G+ KV
Sbjct: 243 KESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---KVT 295
Query: 451 ARLSRPLQRGKGKHASRG 468
++P +G+G RG
Sbjct: 296 LDWAKP--KGEGGFGGRG 311
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 129 (50.5 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 82 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 141
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 142 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 198
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 199 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 228
Score = 98 (39.6 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 29/103 (28%), Positives = 47/103 (45%)
Query: 345 DVLFGVDR--PAKVSFADSFIDPGDEIMAQVKT---VFVDGLPASWDEDRVRELLKNYGE 399
++ +GV R P + S + G I T +FV L DE + +L +G
Sbjct: 267 NMAYGVKRFSPITIDGMTSLV--GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 324
Query: 400 ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+ +++ R+ + K K FGFVT +D A S+N LG+
Sbjct: 325 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 367
Score = 70 (29.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 168 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 227
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 228 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 265
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 180 (68.4 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 44/169 (26%), Positives = 88/169 (52%)
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337
T+F+G+I + +E + + +G N+ D+T+++D +++G AF+ FS++ +A +A
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFG--NILDITIIKDKRTN-VSKGCAFITFSTKEEADNA 75
Query: 338 FKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
+ L +++P +V ++D+ EI + +F+ G+ + DED++R L N
Sbjct: 76 LNTTNESGTFLENMNKPLQVKYSDN------EIEKMERKLFI-GMLGTSDEDQIRILFGN 128
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445
YG I + + R K K +GF+ + T D + + I+ G N
Sbjct: 129 YGIIEDLNIVREK-DGKPKGYGFIKYSTRDESENALREIDGKHTLPGSN 176
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 41/174 (23%), Positives = 83/174 (47%)
Query: 197 FEVFXXXXXXXXXXXXXXXXFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
F VF F++ G + ++ ++ + +T +KG AF+ F+T E+A A+
Sbjct: 18 FTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALN 77
Query: 257 ---------ELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
E N + K + LF+G + T ++ ++ +YG+ +ED
Sbjct: 78 TTNESGTFLENMNKPLQVKYSDNEIEKMERKLFIGML-GTSDEDQIRILFGNYGI--IED 134
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
L +V + +G +G+ F+++S+R ++ +A + + + L G + P V FAD+
Sbjct: 135 LNIVREK--DGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADT 186
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 180 (68.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 63/258 (24%), Positives = 117/258 (45%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + + E + I+G+ + T + +
Sbjct: 428 DAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQD 485
Query: 280 FLGNICKTWTKEA---LKEKLKHYGVDNV-----EDLTLVE-DSNNEGMNRGFAFLEFSS 330
F G TW+ E+ + L + + E T ++ N G ++G+AF+EF+S
Sbjct: 486 FRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS 545
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA +A KR++ R ++ P KT+FV GL E+ +
Sbjct: 546 FEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGLSEETTEETL 601
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450
+E G I + + + + K FGFV F++ + A +++ + E+ +G+ KV
Sbjct: 602 KESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---KVT 654
Query: 451 ARLSRPLQRGKGKHASRG 468
++P +G+G RG
Sbjct: 655 LDWAKP--KGEGGFGGRG 670
Score = 52 (23.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
DD +P VV+ + S ++EDE E DE E DE
Sbjct: 165 DDFEPAVVKGAAAAAAPASDDEEEEEDE-DEDEDEDEDDE 203
Score = 49 (22.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
EDE D + ++E+E +E DE E++E
Sbjct: 250 EDEEDDDEDEDEEEDEEEEEDEEDEDEDEEEE 281
Score = 46 (21.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
EDE + + + EDE +E +E E+DE
Sbjct: 240 EDEEEDEEDEEDEEDDDEDEDEEEDEEEEEDE 271
Score = 44 (20.5 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 52 DDNKPVVVEDEP---KSDVNGSVPATQK---EDEVKESVDEYEKDE 91
DD++ +E P K +VP K EDE +E +E E+DE
Sbjct: 207 DDSEEEAMETVPAKGKKAPAKAVPVKAKSTAEDEDEEEDEEDEEDE 252
Score = 41 (19.5 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 75 QKEDEVKESVDEYEKDE 91
+KED +E D+ E+DE
Sbjct: 141 KKEDSDEEDEDDSEEDE 157
Score = 40 (19.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 60 EDEPKSDVNGSVPATQKEDEVK-ESVDEYEKDE 91
E+E + D + EDE + E +E E+DE
Sbjct: 242 EEEDEEDEEDEEDDDEDEDEEEDEEEEEDEEDE 274
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 180 (68.4 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 179 (68.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 64/269 (23%), Positives = 118/269 (43%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T + +A++ F + A A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG--NILSCNVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
+ A A K++ +L G R V S + E+ A+ K V++
Sbjct: 146 ETHEAAERAIKKMNGM-LLNG--RKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRTFEQMKQDRITR 290
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 46/191 (24%), Positives = 85/191 (44%)
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
TPS + +L++G++ T+ L EK G + + + D G + +A++ F
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRICRDLITSGSSN-YAYVNFQH 61
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA A + DV+ G +P ++ ++ DP + V +FV L S + +
Sbjct: 62 TKDAEHALDTMNF-DVIKG--KPVRIMWSQR--DPSLR-KSGVGNIFVKNLDKSINNKAL 115
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL-GEGDNKAKV 449
+ + +G I + + +K +GFV F+TH+AA K +N L G +
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 450 RARLSRPLQRG 460
++R R + G
Sbjct: 174 KSRKEREAELG 184
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 180 (68.4 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
Score = 41 (19.5 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 670 YDLGGGAPQYGDAYGDRMG 688
Y+ GGG YG G G
Sbjct: 290 YNNGGGGGGYGGGSGSNFG 308
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 183 (69.5 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 46/173 (26%), Positives = 89/173 (51%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P DS +F+G I +TW+++ L+E + YG V ++ ++ D S N ++G F+ + +
Sbjct: 49 PDIDSIKMFVGQIPRTWSEDQLRELFEPYGA--VYEINVLRDRSQNPPQSKGCCFVTYYT 106
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L +L G+ P ++ ADS + + + + + +FV + +E+ +
Sbjct: 107 RKSALEAQNALHNMKILPGMHHPIQMKPADS--EKNNAV--EDRKLFVGMISKKCNENDI 162
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + YG+I + + R P + FVTF A + KS++ ++ EG
Sbjct: 163 RLMFSPYGQIEECRILRG-PDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEG 214
Score = 119 (46.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 42/168 (25%), Positives = 77/168 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F G V E+ ++ + ++KG F+ + T + A +A L N ++ G Q
Sbjct: 74 FEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGMHHPIQMK 133
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K + ++ YG +E+ ++ +G++RG A
Sbjct: 134 PADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYG--QIEECRILRGP--DGLSRGCA 189
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R A A K + + + G P V FAD+ D + +AQ
Sbjct: 190 FVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDKEQKRIAQ 237
Score = 68 (29.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D ++ +S+
Sbjct: 452 LFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAAIQSM 511
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 512 NGFQIGM--KRLKVQLKRSK 529
Score = 44 (20.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 69 GSVPATQKEDEVKESVDEY 87
G +P T ED+++E + Y
Sbjct: 59 GQIPRTWSEDQLRELFEPY 77
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 129 (50.5 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 205
Score = 97 (39.2 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 436 NNAELGE 442
N LG+
Sbjct: 352 NGYRLGD 358
Score = 70 (29.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 204
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 205 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 242
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 129 (50.5 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 118
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 175
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 176 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 205
Score = 97 (39.2 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 436 NNAELGE 442
N LG+
Sbjct: 352 NGYRLGD 358
Score = 70 (29.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 204
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 205 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 242
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 184 (69.8 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 63/269 (23%), Positives = 119/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI G+ + SQ
Sbjct: 31 FSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
+ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETHEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D+++++E+ YG I + + S K K FGFV+F+ H+ A +N E+
Sbjct: 203 DDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQV 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKGERQTELKRKFEQMKQDRMTR 290
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 129 (50.5 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 125
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 182
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 183 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 212
Score = 97 (39.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 436 NNAELGE 442
N LG+
Sbjct: 359 NGYRLGD 365
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 249
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 129 (50.5 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 66 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 125
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 182
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 183 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 212
Score = 97 (39.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 436 NNAELGE 442
N LG+
Sbjct: 359 NGYRLGD 365
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 249
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 177 (67.4 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 58/198 (29%), Positives = 101/198 (51%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+++L+ + +G + D ++ D N+ +RGF F+ +SS S+ +DA
Sbjct: 15 LFIGGLSFETTEDSLRAHFEQWG--KLTDCVVMRDPANK-RSRGFGFVTYSSVSE-VDAA 70
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +RE + Y
Sbjct: 71 MTARPHKVDGRVVEPKRAVSREDSN-KPGAHLT--VKKIFVGGIKEDTEEYHIREYFECY 127
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I I++ + K++ F FVTFD HD + K +IN N E+ + K ++++
Sbjct: 128 GKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQEMQS 187
Query: 452 RLSRPLQRGKGKH-ASRG 468
++ + G G + RG
Sbjct: 188 SSNQRYRGGGGGNFTGRG 205
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 180 (68.4 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 37 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 92
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 93 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 149
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 150 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 209
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 210 ASSS--QRGRSGSGNFG 224
Score = 126 (49.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 55 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 112
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 113 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 169
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 170 AFVTFDDH-DSVDKIV-IQKYHTVNG 193
Score = 41 (19.5 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 670 YDLGGGAPQYGDAYGDRMG 688
Y+ GGG YG G G
Sbjct: 311 YNNGGGGGGYGGGSGSNFG 329
Score = 37 (18.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 593 GSGYPDMPRSTSRGAARR 610
G GY S+S G+ RR
Sbjct: 366 GGGYGGSSSSSSYGSGRR 383
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 129 (50.5 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 70 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 129
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 130 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 186
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 187 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 216
Score = 97 (39.2 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 436 NNAELGE 442
N LG+
Sbjct: 363 NGYRLGD 369
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 156 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 215
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 216 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 253
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 129 (50.5 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 71 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 130
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 131 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 187
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 188 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 217
Score = 97 (39.2 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 436 NNAELGE 442
N LG+
Sbjct: 364 NGYRLGD 370
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 217 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 254
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 129 (50.5 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 40/151 (26%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 71 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 130
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G++RG F+ F
Sbjct: 131 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GVSRGVGFIRFDK 187
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 188 RIEAEEAIKGLNGQKPS-GATEPITVKFANN 217
Score = 97 (39.2 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + +L +G + +++ R+ + K K FGFVT +D A S+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 436 NNAELGE 442
N LG+
Sbjct: 364 NGYRLGD 370
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L + ++ + L + + + +DN+
Sbjct: 217 NPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 254
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 130 (50.8 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 37/149 (24%), Positives = 70/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + T + A +A+ L + K V+ PS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 274 QD--SDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ D L++ + ++ T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 100 SEVIKDANLYISGLPRSMTQKDVEDMFSRFG-RIINSRVLVDQTT--GLSRGVAFIRFDK 156
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 157 RSEAEEAITNFNGHKPP-GSSEPITVKFA 184
Score = 93 (37.8 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 436 NNAELGE 442
N LG+
Sbjct: 306 NGYRLGD 312
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 177 (67.4 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 59/200 (29%), Positives = 100/200 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNTTPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SI--NNAELGEGDNKAKVR- 450
G+I IE+ + S K++ F FVTFD HD+ + K ++ +N E+ + K ++
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMAS 188
Query: 451 ARLSRPLQRGKGKHAS-RGD 469
A S+ +RG G RGD
Sbjct: 189 ASSSQRGRRGSGNFGGGRGD 208
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVKG 172
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 159 (61.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 56/193 (29%), Positives = 90/193 (46%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
+F+G + TK+ LK+ +G V D TL D G +RGF F+ F S+++D
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFG--EVVDCTLKLDPIT-GRSRGFGFVLFKE-SESVDKV 58
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
QK L G K + A +P VK +FV GL E+++RE +G
Sbjct: 59 MD-QKEHKLNGKVIDPKRAKAMKTKEP-------VKKIFVGGLSPDTPEEKIREYFGGFG 110
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA-KSINNAELGEGDNKAKVRARLSRPL 457
E+ IEL + + KR+ F F+TF + K +N L +K +++ +S+
Sbjct: 111 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL----SKCEIKVAMSKEQ 166
Query: 458 QRGKGKHASRGDF 470
+ + + SRG F
Sbjct: 167 YQQQQQWGSRGGF 179
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE----LKNPVINGKQCGVTP 272
FS+ GEV + L ++P T +++GF F+ F E + + + L VI+ K+
Sbjct: 21 FSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK 80
Query: 273 SQDS-DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+++ +F+G + +E ++E +G VE + L D N RGF F+ F
Sbjct: 81 TKEPVKKIFVGGLSPDTPEEKIREYFGGFG--EVESIELPMD-NKTNKRRGFCFITF 134
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 187 (70.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 64/269 (23%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 357 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 416
Query: 622 ERPPPSY 628
P P +
Sbjct: 417 AAPRPPF 423
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 171 (65.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 57/234 (24%), Positives = 106/234 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T + +A++ F + A A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG--NILSCNVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
+ A A K++ +L G R V S + E+ A+ K V++
Sbjct: 146 ETHEAAERAIKKMNGM-LLNG--RKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N E
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 46/191 (24%), Positives = 85/191 (44%)
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
TPS + +L++G++ T+ L EK G + + + D G + +A++ F
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRICRDLITSGSSN-YAYVNFQH 61
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA A + DV+ G +P ++ ++ DP + V +FV L S + +
Sbjct: 62 TKDAEHALDTMNF-DVIKG--KPVRIMWSQR--DPSLR-KSGVGNIFVKNLDKSINNKAL 115
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL-GEGDNKAKV 449
+ + +G I + + +K +GFV F+TH+AA K +N L G +
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 450 RARLSRPLQRG 460
++R R + G
Sbjct: 174 KSRKEREAELG 184
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 176 (67.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 57/197 (28%), Positives = 99/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 126 (49.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 42/157 (26%), Positives = 71/157 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNK--------GFAFLRFATVEQARQAVTELKNPVINGKQC 268
FS +GEV +L+ + + G+ F+ + A +A+ L + K
Sbjct: 76 FSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTI 135
Query: 269 GVT---PSQDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG 322
V+ PS D D L++ + KT T++ +++ YG + LV+ ++ G++RG
Sbjct: 136 KVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYG-RIINSRILVDQAS--GLSRG 192
Query: 323 FAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
AF+ F RS+A +A K L G P V FA
Sbjct: 193 VAFIRFDKRSEAEEAIKDLNGSKPS-GASEPITVKFA 228
Score = 98 (39.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE + ++ +G +T +++ R+ ++K K FGFVT ++ A S+
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 436 NNAELGE 442
N LG+
Sbjct: 348 NGYRLGD 354
Score = 73 (30.8 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
F+Q G + R++++ + ++G AF+RF +A +A+ +L +G +T
Sbjct: 170 FTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAA 229
Query: 272 -PSQDSDTLFLGNICKTWTK 290
P+Q ++ L + T ++
Sbjct: 230 NPNQSKNSQLLSQLYHTQSR 249
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 123 (48.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 39/151 (25%), Positives = 72/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 88 FGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPS 147
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ +G + LV+ G++RG F+ F
Sbjct: 148 SASIRDANLYVSGLPKTMTQKELEQLFSQFG-RIITSRILVDQVT--GVSRGVGFIRFDR 204
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 205 RVEAEEAIKGLNGQKPP-GATEPITVKFANN 234
Score = 102 (41.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L DE+ + ++ +G +T +++ R+ + K K FGFVT +D A S+
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 436 NNAELGE 442
N LG+
Sbjct: 367 NGYRLGD 373
Score = 71 (30.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L G +T
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ S L ++ ++ + L ++ + + +DN+
Sbjct: 234 NPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNL 271
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 182 (69.1 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 61/269 (22%), Positives = 120/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI G+ + SQ
Sbjct: 31 FSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D+D+++++ YG I + + + K + FGFV+F+ H+ A +N E+
Sbjct: 203 DDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRMTR 290
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 182 (69.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 63/272 (23%), Positives = 122/272 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT-PSQD 275
F++V +V VR+ + T + G+ ++ ++ + A +A+ +L +NGK +T S+D
Sbjct: 66 FTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRD 125
Query: 276 SDT-------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
S LF+ N+ K+ + L E G + + D + G +RG+ F++F
Sbjct: 126 SSARRSGVGNLFVKNLDKSVDNKTLHEAFS--GCGTIVSCKVATD--HMGQSRGYGFVQF 181
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK----TVFVDGLPAS 384
+ A +A ++L + VL K F F+ + A K V+V L +
Sbjct: 182 DTEDSAKNAIEKLNGK-VLND-----KQIFVGPFLRKEERESAADKMKFTNVYVKNLSEA 235
Query: 385 WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE----- 439
+D ++ YG I+ + R+ K + FGFV F+ + A +++N +
Sbjct: 236 TTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKE 294
Query: 440 --LGEGDNKAKVRARLSRPLQRGKGKHASRGD 469
+G+ K++ LSR ++G ++ D
Sbjct: 295 WYVGKAQKKSERELELSRRYEQGSSDGGNKFD 326
Score = 46 (21.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 564 PPPRSRAPVDYGSRVVPDRRPYRDEY--TSRGSGYPDMPRSTSRGAARRPYVD 614
P P PV Y V+P +P TS + P R T G + P VD
Sbjct: 536 PMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANATPAQQR-TLLGESLYPLVD 587
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 187 (70.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 64/269 (23%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 187 (70.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 64/269 (23%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 187 (70.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 64/269 (23%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 187 (70.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 64/269 (23%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 187 (70.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 64/269 (23%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 187 (70.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 64/269 (23%), Positives = 121/269 (44%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
FS G + +R+ + T+++ G+A++ F A +A+ + VI GK + SQ
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 90
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
+L F+ N+ K+ +AL + +G N+ +V D N ++G+ F+ F
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENG---SKGYGFVHF 145
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVK---TVFVDGLPASW 385
++ A A +++ +L DR V S + E+ A+ K V++
Sbjct: 146 ETQEAAERAIEKMN--GMLLN-DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL----- 440
D++R+++L +G +++ + S K K FGFV+F+ H+ A +N EL
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 441 --GEGDNKAKVRARLSRPLQRGKGKHASR 467
G K + + L R ++ K +R
Sbjct: 262 YVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 40 (19.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 563 VPPPRSRAPVDYGSRVVPDRRPYRDEYT-SRGSGYPDMPRSTSRGAARRPYVDDGYAQRF 621
+ P + P Y +P + Y S+ + PR T++GA P+ + A R
Sbjct: 397 INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 456
Query: 622 ERPPPSY 628
P P +
Sbjct: 457 AAPRPPF 463
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 130 (50.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 37/149 (24%), Positives = 70/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GE+ +L+ + + G+ F+ + T + A +A+ L + K V+ PS
Sbjct: 40 FSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 274 QD--SDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ D L++ + +T T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 100 SEVIKDANLYISGLPRTMTQKDVEDMFSPFG-RIINSRVLVDQTT--GLSRGVAFIRFDK 156
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 157 RSEAEEAITSFNGHKPP-GSSEPITVKFA 184
Score = 91 (37.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 436 NNAELGE 442
N LG+
Sbjct: 306 NGYRLGD 312
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 128 (50.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 37/149 (24%), Positives = 69/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + T + A +A+ L + K V+ PS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 274 QD--SDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+ D L++ + + T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 100 SEVIKDANLYISGLPRNMTQKDVEDMFSRFG-RIINSRVLVDQTT--GLSRGVAFIRFDK 156
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 157 RSEAEEAITSFNGHKPP-GSSEPITVKFA 184
Score = 93 (37.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 436 NNAELGE 442
N LG+
Sbjct: 306 NGYRLGD 312
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 175 (66.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 56/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYAT-VEKVDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD H++ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 35/129 (27%), Positives = 65/129 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRS 332
AF+ F +
Sbjct: 149 AFVTFDDHN 157
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 177 (67.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 54/190 (28%), Positives = 96/190 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T+E+LK + +G + D ++ ++ +RGF F+ FSS ++ +DA
Sbjct: 23 LFIGGLSSETTEESLKNYYQQWG--ELTDCVVIRGLASQ-KSRGFGFVTFSSVAE-VDAA 78
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
+ + V P + + G + VK +FV G+ +E +RE + YG
Sbjct: 79 MAARPHSIDGRVVDPKRAVSREKSEKQGS--LVNVKKLFVGGIKEDTEEHHLREYFEKYG 136
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SINN--AELGEGDNKAKVRAR 452
+I IE+ + S K++ FGFVTFD +D + K +IN AE+G+ ++ +++
Sbjct: 137 KIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSRQEMK-E 195
Query: 453 LSRPLQRGKG 462
+ P R KG
Sbjct: 196 IQGPRSR-KG 204
Score = 39 (18.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 674 GGAPQYGDAYGDRMGR 689
GG P YG G+ GR
Sbjct: 268 GGYPCYGGGGGEYAGR 283
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 180 (68.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 57/197 (28%), Positives = 100/197 (50%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 71
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV G+ +E +R+ + Y
Sbjct: 72 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S K++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
Query: 452 RLSRPLQRGKGKHASRG 468
S QRG+ + G
Sbjct: 189 ASSS--QRGRSGSGNFG 203
Score = 126 (49.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+
Sbjct: 34 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA--VS 91
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G I + + L++ + YG +E + ++ D + G RGF
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGS-GKKRGF 148
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
AF+ F D++D +QK + G
Sbjct: 149 AFVTFDDH-DSVDKIV-IQKYHTVNG 172
Score = 37 (18.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 670 YDLGGGAPQYGDAYGDRMG 688
Y+ GGG +G G G
Sbjct: 290 YNNGGGGGGFGGGSGSNFG 308
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 127 (49.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + + A +A+ L + K V+ PS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPS 99
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
+S D L++ + +T T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 100 SESIKDANLYISGLPRTMTQKDVEDMFLPFG-RIINSRVLVDQAT--GLSRGVAFIRFDK 156
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 157 RSEAEEAIASFNGHKPP-GSSEPITVKFA 184
Score = 93 (37.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 436 NNAELGE 442
N LG+
Sbjct: 306 NGYRLGD 312
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 178 (67.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 44/173 (25%), Positives = 89/173 (51%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + ++W ++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 11 PDLDAIKMFVGQVPRSWCEKDLRELFEQYGA--VYEINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L +L G+ P ++ ADS + + + + + +F+ + +E+ +
Sbjct: 69 RKAALEAQNALHNMKILPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCNENDI 124
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + +G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 125 RVMFSPFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 176
Score = 125 (49.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N ++ G Q
Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKILPGMHHPIQMK 95
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K + ++ +G +E+ ++ +G++RG A
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFG--QIEECRILRGP--DGLSRGCA 151
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + +AQ
Sbjct: 152 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDKEQKRIAQ 199
Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 402 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 461
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 462 NGFQIGM--KRLKVQLKRSK 479
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 50/186 (26%), Positives = 89/186 (47%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+ LF+G I + ++ LK + +G + +LT+++D GM++G AFL + +R A
Sbjct: 5 DAIKLFIGQIPRNLDEKDLKPIFEQFG--KIYELTVIKDKFT-GMHKGCAFLTYCARESA 61
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
+ A L ++ L G++RP +V ADS E + + +FV L ++ VR +
Sbjct: 62 LKAQSALHEQKTLPGMNRPIQVKPADS------ESRGEDRKLFVGMLGKQQTDEDVRRMF 115
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+ +G I + + R P K FV F TH A +++ + G + + V
Sbjct: 116 ETFGNIDECTVLRG-PDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFAD 174
Query: 455 RPLQRG 460
+RG
Sbjct: 175 TEKERG 180
Score = 138 (53.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 48/167 (28%), Positives = 85/167 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F Q G++ E+ ++ + T +KG AFL + E +A+ A+ E K P +N + V P
Sbjct: 27 FEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMN-RPIQVKP 85
Query: 273 SQDSDT------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
+ DS++ LF+G + K T E ++ + +G N+++ T++ +G ++G AF+
Sbjct: 86 A-DSESRGEDRKLFVGMLGKQQTDEDVRRMFETFG--NIDECTVLRGP--DGTSKGCAFV 140
Query: 327 EFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
+F + ++A A L L G V FAD+ + G M QV
Sbjct: 141 KFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKERGLRRMQQV 187
Score = 86 (35.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 18/81 (22%), Positives = 42/81 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + + K FGFV+FD +A +S+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 438
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 439 NGFQIG----MKRLKVQLKRP 455
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 178 (67.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 44/173 (25%), Positives = 89/173 (51%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G + ++W ++ L+E + YG V ++ ++ D S N ++G F+ F +
Sbjct: 11 PDLDAIKMFVGQVPRSWCEKDLRELFEQYGA--VYEINVLRDRSQNPPQSKGCCFVTFYT 68
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L +L G+ P ++ ADS + + + + + +F+ + +E+ +
Sbjct: 69 RKAALEAQNALHNMKILPGMHHPIQMKPADS--EKNNAV--EDRKLFIGMISKKCNENDI 124
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + +G+I + + R P + FVTF T A T K+++ A+ EG
Sbjct: 125 RVMFSPFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 176
Score = 125 (49.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F Q G V E+ ++ + ++KG F+ F T + A +A L N ++ G Q
Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKILPGMHHPIQMK 95
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ ++ LF+G I K + ++ +G +E+ ++ +G++RG A
Sbjct: 96 PADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFG--QIEECRILRGP--DGLSRGCA 151
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQ 372
F+ F++R+ A A K + + + G P V FAD+ D + +AQ
Sbjct: 152 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDKEQKRIAQ 199
Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +S+
Sbjct: 406 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 465
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 466 NGFQIGM--KRLKVQLKRSK 483
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 124 (48.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 40/151 (26%), Positives = 71/151 (47%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
F +GE+ +L+ + T ++ G+ F+ + + A +A+ L + K V+ PS
Sbjct: 108 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 167
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
S D L++ + KT T++ L++ YG + LV+ G +RG F+ F
Sbjct: 168 SASIRDANLYVSGLPKTMTQKELEQLFSQYG-RIITSRILVDQVT--GGSRGVGFIRFDK 224
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
R +A +A K L + G P V FA++
Sbjct: 225 RIEAEEAIKGLNGQKPS-GAAEPITVKFANN 254
Score = 99 (39.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 345 DVLFGVDRPAKVSFADSFID-PGDEIMAQVKT---VFVDGLPASWDEDRVRELLKNYGEI 400
++ +GV R + ++ DS G I T +FV L DE + +L +G +
Sbjct: 293 NMAYGVKRFSPITI-DSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 351
Query: 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442
+++ R+ + K K FGFVT +D A S+N LG+
Sbjct: 352 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 393
Score = 67 (28.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
FSQ G + R++++ T ++G F+RF +A +A+ L +G +T
Sbjct: 194 FSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFAN 253
Query: 272 -PSQDSDTLFLGNICKTWTKE---ALKEKLKHYGVDNV 305
PSQ + L + ++ + L + + + +DN+
Sbjct: 254 NPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL 291
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 129 (50.5 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 46/160 (28%), Positives = 73/160 (45%)
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG--MNRGFAFLEFSSRSDAM 335
TLF+ N+ + T+E LK G V+ ++ + N G ++ GF F+E+ A
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGA--VKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQ 793
Query: 336 DAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV---KT---VFVDGLPASWDEDR 389
A K+LQ V+ G ++S + P QV +T + V +P D
Sbjct: 794 KALKQLQGH-VVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSRE 852
Query: 390 VRELLKNYGEITKIELARNMP-SAKRKDFGFVTFDT-HDA 427
+REL +GE+ + L + M + + FGFV F T DA
Sbjct: 853 IRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDA 892
Score = 97 (39.2 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273
FS+ G ++E+ ++ TKK KGFAF+ F E A +A E+ V G+ V PS
Sbjct: 423 FSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 479
Score = 77 (32.2 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
V Q + + + NI ++E +G ++ + L + G +RGF F++F
Sbjct: 830 VARKQTTSKILVRNIPFQADSREIRELFSTFG--ELKTVRLPKKMTGTGTHRGFGFVDFF 887
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
++ DA AF L L+G R + +ADS
Sbjct: 888 TKQDAKRAFNALCHSTHLYG--RRLVLEWADS 917
Score = 50 (22.7 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEK 89
D P +D K V G + +K+DE +E + ++K
Sbjct: 107 DSVPPEAKKDNRKKKVAGELEKLKKDDEFQEFLSVHQK 144
Score = 49 (22.3 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264
F+ G +T+ L K K F F+ F + E+A+ A+ I+
Sbjct: 22 FTAFGTLTDCSLKFTKDGKFRK-FGFIGFKSEEEAQTALNHFNKSFID 68
Score = 40 (19.1 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 55 KPVVVEDEPKSDVNGSVPATQKEDEVKESV-DEYEK 89
KP + PK SVP K+D K+ V E EK
Sbjct: 95 KPSQSKPPPKD--KDSVPPEAKKDNRKKKVAGELEK 128
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 181 (68.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 58/209 (27%), Positives = 99/209 (47%)
Query: 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335
S LF+GN+ T+E L ++ + +G + +T + G +RGF ++EF++ +DA
Sbjct: 276 SANLFVGNLSWNVTEEWLHQEFEQFGELSARIMT----ERDTGRSRGFGYVEFTNAADAA 331
Query: 336 DAFKRLQKRDV------L-FGVDRPAKVS---FADSFIDP----GDEIMAQVKTVFVDGL 381
A++ +++ ++ L + RPA F + + GD+ + T+FV L
Sbjct: 332 KAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNL 391
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
P S +ED V E+ G + I L +M S + K FG+V + + D A K+ N +
Sbjct: 392 PFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA---RKAYNELQGA 448
Query: 442 EGDNKAKVRARLSRPLQRGKGKHASRGDF 470
E D + +R S P G RG F
Sbjct: 449 EIDGRP-IRLDFSTPRANNGGGGGGRGGF 476
Score = 40 (19.1 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEK 89
E E +SD + S ++ E VK+ V + K
Sbjct: 74 ESESESDSSSSESESEDEKPVKKEVKKEAK 103
Score = 37 (18.1 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDE 86
E +PKS P++ E E ES E
Sbjct: 53 EKKPKSKKKEPTPSSSSESE-SESESE 78
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 125 (49.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 37/149 (24%), Positives = 70/149 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT---PS 273
FS +GEV +L+ + + G+ F+ + + A +A+ L + K V+ PS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPS 99
Query: 274 QDS--DT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSS 330
++ D L++ + +T T++ +++ +G + LV+ + G++RG AF+ F
Sbjct: 100 SETIKDANLYISGLPRTMTQKDVEDMFLPFG-HIINSRVLVDQAT--GLSRGVAFIRFDK 156
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359
RS+A +A G P V FA
Sbjct: 157 RSEAEEAIASFNGHKPP-GSSEPITVKFA 184
Score = 93 (37.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ L DE + ++ +G +T +++ R+ + K K FGFVT ++ A S+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 436 NNAELGE 442
N LG+
Sbjct: 306 NGYRLGD 312
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 167 (63.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 56/199 (28%), Positives = 98/199 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+ + T E+L+ + +G + D ++ D N + RGF F+ +++ + +DA
Sbjct: 9 LFIDGLSFETTDESLRSHFERWGT--LTDCVVMRDPNTK-RPRGFGFVTYTTVEE-VDAA 64
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + VK +FV + +E +RE + Y
Sbjct: 65 MNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKIFVGSIKEDTEEHHLREYFEQY 121
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+I IE+ + S +++ F FVTFD HD+ + K ++N N E+ + +K ++ +
Sbjct: 122 GKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 181
Query: 452 RLSRPLQRGKGKHASRGDF 470
S QRG+ + DF
Sbjct: 182 ASSS--QRGRNGSGNYNDF 198
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 38/146 (26%), Positives = 71/146 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQCGVTP 272
F + G +T+ +M +P TK+ +GF F+ + TVE+ A+ ++ V+ K+
Sbjct: 27 FERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRA--VS 84
Query: 273 SQDSDT---------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323
+DS +F+G+I + + L+E + YG +E + ++ D + G RGF
Sbjct: 85 REDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYG--KIEVIEIMTDRGS-GQKRGF 141
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFG 349
F+ F D++D +QK + G
Sbjct: 142 VFVTFDDH-DSVDKIV-IQKYHTVNG 165
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 174 (66.3 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 72/271 (26%), Positives = 117/271 (43%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276
F G + R+ +P T+ G+ ++ F A A+ + +INGK + SQ
Sbjct: 38 FRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97
Query: 277 DTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
D L F+ N+ K+ AL +G N+ +V D N ++G+A++ F
Sbjct: 98 DHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNG---SKGYAYVHF 152
Query: 329 SSRSDAMDAF-----KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
S + A A RL R V G + + A+ + D A VFV
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE--VRTRDR--ATFTNVFVKNFGD 208
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA-----KSINNA 438
D++++++L YG +++ R+ + K K FGFV ++TH+AA KSI+
Sbjct: 209 DIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGK 267
Query: 439 EL--GEGDNKAKVRARLSRPLQRGKGKHASR 467
L G K + A L R +R K K +R
Sbjct: 268 VLCVGRAQKKIERLAELRRRFERLKLKDKTR 298
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 169 (64.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 68/260 (26%), Positives = 119/260 (45%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN--GKQC---------GV 270
+ E+RL+ + K+KG A++ F T A + + E + I+ G++
Sbjct: 342 DAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNS 399
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE-DSNNEGMNRGFAFLEFS 329
T S +S TL L N+ + T+E L+E E T ++ N G ++G+AF+EF+
Sbjct: 400 TWSGESKTLVLSNLSYSATEETLQEVF--------EKATHIKVPQNQNGKSKGYAFIEFA 451
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDR 389
S DA +A KR++ R ++ P KT+FV GL ED
Sbjct: 452 SFEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDT 503
Query: 390 VRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
E LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ K
Sbjct: 504 TEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---K 559
Query: 449 VRARLSRPLQRGKGKHASRG 468
V ++P +G+G RG
Sbjct: 560 VTLDWAKP--KGEGGFGGRG 577
Score = 116 (45.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 57/227 (25%), Positives = 104/227 (45%)
Query: 237 NKGFAFLRFATVEQARQAV--TELK---NPVINGKQCGVTPSQDSD--TLFLGNICKTWT 289
++ F ++ F + E +A+ T LK N + K G +D D TL N+ T
Sbjct: 273 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVT 332
Query: 290 KEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
++ LKE + D VE + LV + +G ++G A++EF + +DA + Q ++ +
Sbjct: 333 QDELKEVFE----DAVE-IRLV---SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYT 384
Query: 350 VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
+ K D + KT+ + L S E+ ++E+ + + T I++ +N
Sbjct: 385 GE---KGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ 438
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ K K + F+ F + + A S N E+ EG +A +R L P
Sbjct: 439 -NGKSKGYAFIEFASFEDAKEALNSCNKREI-EG--RA-IRLELQGP 480
Score = 55 (24.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
DD++P V + G+ PAT ED+ + D+ E++E
Sbjct: 112 DDDEPAV---RKAAAAFGAAPATDDEDDEDDDDDDDEEEE 148
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 169 (64.5 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 68/260 (26%), Positives = 119/260 (45%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN--GKQC---------GV 270
+ E+RL+ + K+KG A++ F T A + + E + I+ G++
Sbjct: 342 DAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNS 399
Query: 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE-DSNNEGMNRGFAFLEFS 329
T S +S TL L N+ + T+E L+E E T ++ N G ++G+AF+EF+
Sbjct: 400 TWSGESKTLVLSNLSYSATEETLQEVF--------EKATHIKVPQNQNGKSKGYAFIEFA 451
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDR 389
S DA +A KR++ R ++ P KT+FV GL ED
Sbjct: 452 SFEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDT 503
Query: 390 VRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
E LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ K
Sbjct: 504 TEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---K 559
Query: 449 VRARLSRPLQRGKGKHASRG 468
V ++P +G+G RG
Sbjct: 560 VTLDWAKP--KGEGGFGGRG 577
Score = 116 (45.9 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 57/227 (25%), Positives = 104/227 (45%)
Query: 237 NKGFAFLRFATVEQARQAV--TELK---NPVINGKQCGVTPSQDSD--TLFLGNICKTWT 289
++ F ++ F + E +A+ T LK N + K G +D D TL N+ T
Sbjct: 273 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVT 332
Query: 290 KEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349
++ LKE + D VE + LV + +G ++G A++EF + +DA + Q ++ +
Sbjct: 333 QDELKEVFE----DAVE-IRLV---SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYT 384
Query: 350 VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409
+ K D + KT+ + L S E+ ++E+ + + T I++ +N
Sbjct: 385 GE---KGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ 438
Query: 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
+ K K + F+ F + + A S N E+ EG +A +R L P
Sbjct: 439 -NGKSKGYAFIEFASFEDAKEALNSCNKREI-EG--RA-IRLELQGP 480
Score = 57 (25.1 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 52 DDNKPVVVEDEPK----SDVNGSVPATQKEDEVKESVDEYEKDE 91
DD++ EDEP + G+ PAT ED+ + D+ E++E
Sbjct: 75 DDSEEEDDEDEPAVRKAAAAFGAAPATDDEDDEDDDDDDDEEEE 118
Score = 41 (19.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
+D K VV K + A ++ KE DE ++D+
Sbjct: 37 EDGKAVVATSGKKGAASPGKGAKNGKNARKEDSDEEDEDD 76
Score = 40 (19.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
EDE D + + +D+ + DE E++E
Sbjct: 158 EDEEDDDDDDEEEEEEDDDDEDDHDDEEEEEE 189
Score = 38 (18.4 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 178 DAEEHDHHEMFQERRKRKEFE 198
D ++HD E +E + +E E
Sbjct: 177 DEDDHDDEEEEEEEEEEEEEE 197
Score = 38 (18.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
EDE + D + ++ED+ E + E++E
Sbjct: 156 EDEDEEDDDDDDEEEEEEDDDDEDDHDDEEEE 187
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 165 (63.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 65/265 (24%), Positives = 120/265 (45%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV----------- 270
+ E+RL+ Q K+KG A++ F + A + + E + I+G+ +
Sbjct: 416 DALEIRLVS--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQE 473
Query: 271 ------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE-DSNNEGMNRGF 323
T S +S TL L N+ + T+E L+E E T ++ N +G ++G+
Sbjct: 474 RTGKNSTWSGESKTLVLSNLSYSATEETLQEVF--------EKATFIKVPQNQQGKSKGY 525
Query: 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA 383
AF+EF+S DA +A K ++ R ++ P KT+FV GL
Sbjct: 526 AFIEFASFEDAKEALNSCNKMEI---EGRTIRLELQGPRGSPNARSQPS-KTLFVKGLSE 581
Query: 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
E+ ++E + G + + + + + K FGFV F++ + A +++ + E+ +G
Sbjct: 582 DTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DG 637
Query: 444 DNKAKVRARLSRPLQRGKGKHASRG 468
+ KV ++P +G+G RG
Sbjct: 638 N---KVTLDWAKP--KGEGGFGGRG 657
Score = 60 (26.2 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
D+ +P VV+ + + V + PA++ EDE +E +E E+DE
Sbjct: 167 DEFEPPVVKGK-QGKVAAAAPASEDEDE-EEDEEEEEEDE 204
Score = 44 (20.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 55 KPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
K V ED+ + + ++E+E +E +E E++E
Sbjct: 236 KNVAEEDDDDEEEDEDEEEDEEEEEDEEEEEEEEEEE 272
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYE 88
ED + + + EDE E DE+E
Sbjct: 142 EDSDEDEDDDDDEDDSDEDEEDEEEDEFE 170
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 155 (59.6 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 53/200 (26%), Positives = 91/200 (45%)
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLT 309
Q R + P G Q D+ LF+G I + ++ LK + +G + +LT
Sbjct: 18 QPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFG--RIYELT 75
Query: 310 LVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEI 369
+++D GM++G AFL + +R A+ A L ++ L G+ RP +V ADS G +
Sbjct: 76 VLKDPYT-GMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRD- 133
Query: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
+ +FV L E+ V L + +G I + + R P K FV F +H A
Sbjct: 134 ----RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQ 188
Query: 430 TCAKSINNAELGEGDNKAKV 449
+++ ++ G + + V
Sbjct: 189 AAIHALHGSQTMPGASSSLV 208
Score = 135 (52.6 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 43/155 (27%), Positives = 79/155 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVING--KQCGVTPS 273
F Q G + E+ ++ +P T +KG AFL + + A +A T L + + G + V P+
Sbjct: 65 FEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPA 124
Query: 274 QDSDT-------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
DS++ LF+G + K ++E + + +GV +++ T++ +G ++G AF+
Sbjct: 125 -DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGV--IDECTVLRGP--DGSSKGCAFV 179
Query: 327 EFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
+FSS ++A A L + G V FAD+
Sbjct: 180 KFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 214
Score = 87 (35.7 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 20/85 (23%), Positives = 44/85 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G I ++ + + + K FGFV+FD +A T +++
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 461
Query: 436 NNAELGEGDNKAKVRARLSRPLQRG 460
N ++G +++ +L RP G
Sbjct: 462 NGFQIG----MKRLKVQLKRPKDPG 482
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 168 (64.2 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 50/186 (26%), Positives = 89/186 (47%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+ LF+G I + ++ LK + +G + +LT+++D GM++G AFL + +R A
Sbjct: 5 DAIKLFIGQIPRNLDEKDLKPIFEQFG--KIYELTVIKDKFT-GMHKGCAFLTYCARESA 61
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
+ A L ++ L G++RP +V ADS E + + +FV L ++ VR +
Sbjct: 62 LKAQSALHEQKTLPGMNRPIQVKPADS------ESRGEDRKLFVGMLGKQQTDEDVRRMF 115
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+ +G I + + R P K FV F TH A +++ + G + + V
Sbjct: 116 EPFGNIDECTVLRG-PDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFAD 174
Query: 455 RPLQRG 460
+RG
Sbjct: 175 TEKERG 180
Score = 138 (53.6 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 48/167 (28%), Positives = 85/167 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F Q G++ E+ ++ + T +KG AFL + E +A+ A+ E K P +N + V P
Sbjct: 27 FEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKTLPGMN-RPIQVKP 85
Query: 273 SQDSDT------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
+ DS++ LF+G + K T E ++ + +G N+++ T++ +G ++G AF+
Sbjct: 86 A-DSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFG--NIDECTVLRGP--DGTSKGCAFV 140
Query: 327 EFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQV 373
+F + ++A A L L G V FAD+ + G M QV
Sbjct: 141 KFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKERGLRRMQQV 187
Score = 83 (34.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 17/81 (20%), Positives = 42/81 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + + K FGFV+FD +A +++
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 439 NGFQIG----MKRLKVQLKRP 455
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 178 (67.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 63/259 (24%), Positives = 116/259 (44%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + E + I+G+ + T + +
Sbjct: 416 DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQD 473
Query: 280 FLGNICKTWTKEA---LKEKLKHYGVDNV-----EDLTLVE-DSNNEGMNRGFAFLEFSS 330
+ G TW+ E+ + L + + E T ++ N G ++G+AF+EF+S
Sbjct: 474 YRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS 533
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA +A KR++ R ++ P KT+FV GL ED
Sbjct: 534 FEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDTT 585
Query: 391 RELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
E LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ KV
Sbjct: 586 EETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---KV 641
Query: 450 RARLSRPLQRGKGKHASRG 468
++P +G+G RG
Sbjct: 642 TLDWAKP--KGEGGFGGRG 658
Score = 46 (21.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 52 DDNKPVVVEDEPKSDVNGSV-------PATQKEDEVKESVDEYEKDE 91
+D++ EDE + ++ +V PA++ ED+ + DE E D+
Sbjct: 155 EDDEDDEDEDEDEDEIEPAVMKAAAAAPASEDEDDEDDEDDEDEDDD 201
Score = 45 (20.9 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
DD++ +E P + K V E DE E DE
Sbjct: 205 DDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDE 244
Score = 39 (18.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 58 VVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
V EDE + + + ED+ E D+ +++E
Sbjct: 233 VAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEE 266
Score = 38 (18.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 75 QKEDEVKESVDEYEKDE 91
+KED +E D+ E+D+
Sbjct: 141 KKEDSDEEEEDDSEEDD 157
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 177 (67.4 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 57/232 (24%), Positives = 107/232 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT----- 271
F Q+G V VR+ + T+++ G+ ++ F + A +A+ EL + GK V
Sbjct: 56 FGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRD 115
Query: 272 PS---QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
PS + +F+ N+ ++ +AL + +G N+ + DS+ G ++G+ F+++
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG--NIVSCKVAVDSS--GQSKGYGFVQY 171
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT----VFVDGLPAS 384
++ A A ++L G+ K + F+ + KT V+V L S
Sbjct: 172 ANEESAQKAIEKLN------GMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAES 225
Query: 385 WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+D ++ YG+IT + ++ K K FGFV F+ D A +S+N
Sbjct: 226 TTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLN 276
Score = 121 (47.7 bits), Expect = 0.00057, P = 0.00057
Identities = 42/189 (22%), Positives = 85/189 (44%)
Query: 261 PVINGKQCGVTPSQDSDT-LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGM 319
P + ++ T ++ T +++ N+ ++ T + LK YG + +++D EG
Sbjct: 198 PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG--KITSAVVMKDG--EGK 253
Query: 320 NRGFAFLEFSSRSDAMDAFKRLQKR---DVLFGVDRPAK---------VSFADSFIDPGD 367
++GF F+ F + DA A + L D + V R K V + + + D
Sbjct: 254 SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAAD 313
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
+ Q ++V L S +++++E+ +G +T ++ R+ P+ K GFV F T +
Sbjct: 314 KF--QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEE 370
Query: 428 AVTCAKSIN 436
A ++
Sbjct: 371 ATEAMSQLS 379
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 177 (67.4 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 63/259 (24%), Positives = 115/259 (44%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + E + I+G+ + T +
Sbjct: 420 DAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQD 477
Query: 280 FLGNICKTWTKEA---LKEKLKHYGVDNV-----EDLTLVE-DSNNEGMNRGFAFLEFSS 330
+ G TW+ E+ + L + + E T ++ N G ++G+AF+EF+S
Sbjct: 478 YRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS 537
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA +A KR++ R ++ P KT+FV GL ED
Sbjct: 538 FEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDTT 589
Query: 391 RELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
E LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ KV
Sbjct: 590 EETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---KV 645
Query: 450 RARLSRPLQRGKGKHASRG 468
++P +G+G RG
Sbjct: 646 TLDWAKP--KGEGGFGGRG 662
Score = 47 (21.6 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 52 DDNKPVVVEDEP----KSDVNGSVPATQK---EDEVKESVDEYEKDE 91
DD++ +E P K+ V +VP K EDE +E DE E+D+
Sbjct: 206 DDSEEEAMETTPAKGKKAPVK-AVPVKAKSTAEDEDEEEDDEDEEDD 251
Score = 43 (20.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 60 EDEPKSDVNGSVPATQKEDEVK-ESVDEYEKDE 91
EDE + D + ++EDE E DE E++E
Sbjct: 239 EDEEEDDEDEEDDDEEEEDEDDDEEEDEEEEEE 271
Score = 41 (19.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
DD++ EDE + D + P K + DE E DE
Sbjct: 151 DDSEEEDEEDEDE-DEDEFEPTVMKAAAAAPASDEEEDDE 189
Score = 40 (19.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 52 DDNKPVVVEDE---PKSDVNGSVPATQKEDEVKESVDEYEKD 90
D+ +P V++ P SD ED+ +E DE E D
Sbjct: 166 DEFEPTVMKAAAAAPASDEEEDDEEDDDEDDDEEDEDEDEDD 207
Score = 39 (18.8 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 70 SVPATQKEDEVKESVDEYEKDE 91
+ PA+ +E++ +E DE + +E
Sbjct: 178 AAPASDEEEDDEEDDDEDDDEE 199
Score = 39 (18.8 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
E+E D + ED+ +E +E E++E
Sbjct: 241 EEEDDEDEEDDDEEEEDEDDDEEEDEEEEEEE 272
Score = 39 (18.8 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKD 90
DD++ ED+ + + ++E+ VKE+ + +K+
Sbjct: 250 DDDEEEEDEDDDEEEDEEEEEEEEEEEPVKEAPGKRKKE 288
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 169 (64.5 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 58/190 (30%), Positives = 93/190 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G+ + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 16 LFIGGLSFETTNESLRSHFEQWGM--LRDCVVMRDPNTKH-SRGFGFVTYATVKE-VDA- 70
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
R K D V+ VS DS PG + V+ +FV G+ +E +R+ K YG
Sbjct: 71 ARSHKVDGRV-VEPKRAVSREDSQ-RPGAHLT--VRKIFVGGIKEDTEEHHLRDYFKQYG 126
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQ 458
+I IE+ + S K++ F VTFD HD I + G N +VR LS+ Q
Sbjct: 127 KIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIV---IQKYYIVNGHN-CEVRKALSK--Q 180
Query: 459 RGKGKHASRG 468
+SRG
Sbjct: 181 EMASASSSRG 190
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 172 (65.6 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 65/260 (25%), Positives = 114/260 (43%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + + E + I+G+ + T +
Sbjct: 425 DAVEIRLVS--KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQD 482
Query: 280 FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE----------DSNNEGMNRGFAFLEFS 329
G TW+ E+ L + E+ TL E N G ++G+AF+EF+
Sbjct: 483 HRGGKNSTWSGESKTLVLSNLSYSATEE-TLQEVFEKATHIKVPQNQNGKSKGYAFIEFA 541
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDR 389
S DA +A KR++ R ++ P KT+FV GL ED
Sbjct: 542 SFEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDT 593
Query: 390 VRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
E LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ K
Sbjct: 594 TEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---K 649
Query: 449 VRARLSRPLQRGKGKHASRG 468
V ++P +G+G RG
Sbjct: 650 VTLDWAKP--KGEGGFGGRG 667
Score = 52 (23.4 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 60 EDEPK----SDVNGSVPATQKEDEVKESVDEYEKDE 91
EDEP + G+ PAT ED+ + D+ E++E
Sbjct: 163 EDEPAVRKAAAAFGAAPATDDEDDEDDDDDDDEEEE 198
Score = 44 (20.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
EDE D + +++D+ ++ DE E++E
Sbjct: 241 EDEEDDDDDDDEEEEEEDDDDEDDDDEEEEEE 272
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKD 90
DD+ E+E D + ++E+E +E +E K+
Sbjct: 247 DDDDDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEEPVKE 285
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
EDE + D + ++E++ + D+ E++E
Sbjct: 239 EDEDEEDDDDDDDEEEEEEDDDDEDDDDEEEE 270
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
+DE + + + E+E +E +E E++E
Sbjct: 250 DDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEE 281
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
+DE D + ++EDE E DE + +E
Sbjct: 182 DDEDDEDDDDDDDEEEEEDEEDEE-DEDDSEE 212
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYE 88
DD+ E+E + D + ++E+E +E +E E
Sbjct: 245 DDDDDDDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEE 281
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 176 (67.0 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 45/173 (26%), Positives = 87/173 (50%)
Query: 272 PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSS 330
P D+ +F+G I ++W+++ LKE + YG V + ++ D S N ++G F+ F +
Sbjct: 110 PDPDAIKMFVGQIPRSWSEKELKELFEPYGA--VYQINILRDRSQNPPQSKGCCFVTFYT 167
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
R A++A L L G+ P ++ ADS + + + + + +F+ + +E+ +
Sbjct: 168 RKAALEAQNALHNIKTLTGMHHPIQMKPADS--EKSNAV--EDRKLFIGMVSKKCNENDI 223
Query: 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443
R + YG+I + + R P + FVTF T A K+++ ++ EG
Sbjct: 224 RVMFSPYGQIEECRILRG-PDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEG 275
Score = 122 (48.0 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 40/157 (25%), Positives = 73/157 (46%)
Query: 217 FSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKN-PVINGK----QCG 269
F G V ++ ++ + ++KG F+ F T + A +A L N + G Q
Sbjct: 135 FEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLTGMHHPIQMK 194
Query: 270 VTPSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
S+ S+ LF+G + K + ++ YG +E+ ++ +G++RG A
Sbjct: 195 PADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYG--QIEECRILRGP--DGLSRGCA 250
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
F+ FS+R+ A +A K + + + G P V FAD+
Sbjct: 251 FVTFSTRAMAQNAIKAMHQSQTMEGCSSPMVVKFADT 287
Score = 71 (30.1 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + K FGFV++D +A +++
Sbjct: 502 LFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 561
Query: 436 NNAELGEGDNKAKVRARLSR 455
N ++G + KV+ + S+
Sbjct: 562 NGFQIGM--KRLKVQLKRSK 579
Score = 40 (19.1 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 61 DEPKSDVN----GSVPATQKEDEVKESVDEY 87
D+P D G +P + E E+KE + Y
Sbjct: 108 DQPDPDAIKMFVGQIPRSWSEKELKELFEPY 138
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 179 (68.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 272 PSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
P +D D LF+G I + ++ LK + +G + +LT+++D GM++G AFL +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFT-GMHKGCAFLTYC 103
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM----AQVKTVFVDGLPASW 385
R A+ A L ++ L G++RP +V ADS G + +Q + +FV L
Sbjct: 104 ERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQ 163
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445
ED VR L + +G I + + R P K FV + +H A +++ ++ G +
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRG-PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS 222
Query: 446 KAKV 449
+ V
Sbjct: 223 SSLV 226
Score = 121 (47.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 44/164 (26%), Positives = 80/164 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVIN-------- 264
F + G++ E+ ++ + T +KG AFL + E +A+ A+ E K P +N
Sbjct: 74 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133
Query: 265 ------GKQC-GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
G C PSQD LF+G + K +++ ++ + +G N+E+ T++ +
Sbjct: 134 DSESRGGSSCLRQPPSQDRK-LFVGMLNKQQSEDDVRRLFEAFG--NIEECTILRGP--D 188
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
G ++G AF+++SS ++A A L + G V FAD+
Sbjct: 189 GNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 232
Score = 60 (26.2 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 417 FGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
FGFV+FD +A T +++N ++G +++ +L RP
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIG----MKRLKVQLKRP 479
Score = 39 (18.8 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 21/84 (25%), Positives = 31/84 (36%)
Query: 545 VPSYPKP-GLKREYGRRDEVP-PPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRS 602
VPS P P G+ G + P + A G P + P + + Y + +
Sbjct: 329 VPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQA--YAGVQQY 386
Query: 603 TSRGAARRPYVDDGYAQRFERPPP 626
G A P +Q F +PPP
Sbjct: 387 A--GPAAYPAAYGQISQAFPQPPP 408
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 179 (68.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 272 PSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
P +D D LF+G I + ++ LK + +G + +LT+++D GM++G AFL +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFT-GMHKGCAFLTYC 103
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM----AQVKTVFVDGLPASW 385
R A+ A L ++ L G++RP +V ADS G + +Q + +FV L
Sbjct: 104 ERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQ 163
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445
ED VR L + +G I + + R P K FV + +H A +++ ++ G +
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRG-PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS 222
Query: 446 KAKV 449
+ V
Sbjct: 223 SSLV 226
Score = 121 (47.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 44/164 (26%), Positives = 80/164 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVIN-------- 264
F + G++ E+ ++ + T +KG AFL + E +A+ A+ E K P +N
Sbjct: 74 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133
Query: 265 ------GKQC-GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
G C PSQD LF+G + K +++ ++ + +G N+E+ T++ +
Sbjct: 134 DSESRGGSSCLRQPPSQDRK-LFVGMLNKQQSEDDVRRLFEAFG--NIEECTILRGP--D 188
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
G ++G AF+++SS ++A A L + G V FAD+
Sbjct: 189 GNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 232
Score = 60 (26.2 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 417 FGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
FGFV+FD +A T +++N ++G +++ +L RP
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIG----MKRLKVQLKRP 479
Score = 39 (18.8 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 21/84 (25%), Positives = 31/84 (36%)
Query: 545 VPSYPKP-GLKREYGRRDEVP-PPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRS 602
VPS P P G+ G + P + A G P + P + + Y + +
Sbjct: 329 VPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQA--YAGVQQY 386
Query: 603 TSRGAARRPYVDDGYAQRFERPPP 626
G A P +Q F +PPP
Sbjct: 387 A--GPAAYPAAYGQISQAFPQPPP 408
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 179 (68.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 272 PSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
P +D D LF+G I + ++ LK + +G + +LT+++D GM++G AFL +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFT-GMHKGCAFLTYC 103
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM----AQVKTVFVDGLPASW 385
R A+ A L ++ L G++RP +V ADS G + +Q + +FV L
Sbjct: 104 ERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQ 163
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445
ED VR L + +G I + + R P K FV + +H A +++ ++ G +
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRG-PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGAS 222
Query: 446 KAKV 449
+ V
Sbjct: 223 SSLV 226
Score = 121 (47.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 44/164 (26%), Positives = 80/164 (48%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVIN-------- 264
F + G++ E+ ++ + T +KG AFL + E +A+ A+ E K P +N
Sbjct: 74 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 133
Query: 265 ------GKQC-GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
G C PSQD LF+G + K +++ ++ + +G N+E+ T++ +
Sbjct: 134 DSESRGGSSCLRQPPSQDRK-LFVGMLNKQQSEDDVRRLFEAFG--NIEECTILRGP--D 188
Query: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
G ++G AF+++SS ++A A L + G V FAD+
Sbjct: 189 GNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 232
Score = 60 (26.2 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 417 FGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
FGFV+FD +A T +++N ++G +++ +L RP
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIG----MKRLKVQLKRP 479
Score = 39 (18.8 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 21/84 (25%), Positives = 31/84 (36%)
Query: 545 VPSYPKP-GLKREYGRRDEVP-PPRSRAPVDYGSRVVPDRRPYRDEYTSRGSGYPDMPRS 602
VPS P P G+ G + P + A G P + P + + Y + +
Sbjct: 329 VPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAADPLQQA--YAGVQQY 386
Query: 603 TSRGAARRPYVDDGYAQRFERPPP 626
G A P +Q F +PPP
Sbjct: 387 A--GPAAYPAAYGQISQAFPQPPP 408
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 167 (63.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 56/197 (28%), Positives = 97/197 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T + L+ + YG + D +V++ + +R F F+ +SS +A A
Sbjct: 12 LFVGGLNVQTTDDGLRNHFEQYG--KLTDCVVVQNQQLK-RSRCFGFVTYSSPDEADSAM 68
Query: 339 KRLQKRDVLFGVDRPAKVSFADSFIDPGD-EIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ +L G + K + A D G E +A+VK +F+ GL +ED +R+ +
Sbjct: 69 SA--RPHILDGNNVELKRAVARE--DAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQF 124
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA----VTCAKSINN--AELGEGDNKAKVRA 451
G + K E+ + + K++ FGFV F+ +D+A V IN E+ + K +++A
Sbjct: 125 GAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEMQA 184
Query: 452 RLSRPLQRGKGKHASRG 468
SR RG G+ RG
Sbjct: 185 AGSRGGGRG-GRGGGRG 200
Score = 42 (19.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 673 GGGAPQYGDAYGDRM 687
GGG YG YGD+M
Sbjct: 238 GGG---YGGGYGDQM 249
Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 665 RARLDYDLGGGAPQYG-DAYG 684
R+ Y GGG YG YG
Sbjct: 282 RSNAPYSRGGGGGGYGRGGYG 302
Score = 38 (18.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 671 DLGGGAPQ----YGDAYGDRMGRSN 691
D G G Q YG G+ GRSN
Sbjct: 260 DFGSGYGQQSSGYGPMKGNYSGRSN 284
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 178 (67.7 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 63/259 (24%), Positives = 116/259 (44%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + E + I+G+ + T + +
Sbjct: 415 DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQD 472
Query: 280 FLGNICKTWTKEA---LKEKLKHYGVDNV-----EDLTLVE-DSNNEGMNRGFAFLEFSS 330
+ G TW+ E+ + L + + E T ++ N G ++G+AF+EF+S
Sbjct: 473 YRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS 532
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA +A KR++ R ++ P KT+FV GL ED
Sbjct: 533 FEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDTT 584
Query: 391 RELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
E LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ KV
Sbjct: 585 EETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---KV 640
Query: 450 RARLSRPLQRGKGKHASRG 468
++P +G+G RG
Sbjct: 641 TLDWAKP--KGEGGFGGRG 657
Score = 45 (20.9 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
DD++ +E P + K V E DE E DE
Sbjct: 204 DDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDE 243
Score = 42 (19.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 60 EDEPKS-DVNGSVPATQKEDEVKESVDEYEKDE 91
E EP + + PA++ ED+ + DE + D+
Sbjct: 169 EIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDD 201
Score = 40 (19.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 75 QKEDEVKESVDEYEKDE 91
+KED +E D+ E+DE
Sbjct: 141 KKEDSDEEEDDDSEEDE 157
Score = 37 (18.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
ED+ D + +DE E +E E++E
Sbjct: 240 EDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEE 271
Score = 37 (18.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYE 88
D+++ EDE D ++DE +E +E E
Sbjct: 235 DEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEE 271
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 178 (67.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 63/259 (24%), Positives = 116/259 (44%)
Query: 222 EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV--TPSQDSDTL 279
+ E+RL+ + K+KG A++ F T A + E + I+G+ + T + +
Sbjct: 417 DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQD 474
Query: 280 FLGNICKTWTKEA---LKEKLKHYGVDNV-----EDLTLVE-DSNNEGMNRGFAFLEFSS 330
+ G TW+ E+ + L + + E T ++ N G ++G+AF+EF+S
Sbjct: 475 YRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS 534
Query: 331 RSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRV 390
DA +A KR++ R ++ P KT+FV GL ED
Sbjct: 535 FEDAKEALNSCNKREI---EGRAIRLELQGPRGSPNARSQPS-KTLFVKGL----SEDTT 586
Query: 391 RELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
E LK ++ + + + + K FGFV F++ + A +++ + E+ +G+ KV
Sbjct: 587 EETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGN---KV 642
Query: 450 RARLSRPLQRGKGKHASRG 468
++P +G+G RG
Sbjct: 643 TLDWAKP--KGEGGFGGRG 659
Score = 45 (20.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 60 EDEPKS-DVNGSVPATQKEDEVKESVDEYEKDE 91
E EP + + PA++ ED+ + DE E D+
Sbjct: 169 EIEPAAMKAAAAAPASEDEDDEDDEDDEDEDDD 201
Score = 45 (20.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 52 DDNKPVVVEDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
DD++ +E P + K V E DE E DE
Sbjct: 204 DDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDE 243
Score = 41 (19.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 75 QKEDEVKESVDEYEKDE 91
+KED +E D+ E+DE
Sbjct: 141 KKEDSDEEEEDDSEEDE 157
Score = 37 (18.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 60 EDEPKSDVNGSVPATQKEDEVKESVDEYEKDE 91
ED+ D + ++DE ++ +E E++E
Sbjct: 240 EDDEDEDDDDDDDDDDEDDEDEDDEEEEEEEE 271
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 152 (58.6 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 52/190 (27%), Positives = 94/190 (49%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + T E+L+ + +G + D ++ D N + +RGF F+ +++ + +DA
Sbjct: 12 LFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDPNTK-RSRGFGFVTYATVEE-VDAA 67
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS PG + +K +FV + +E +R+ Y
Sbjct: 68 MNARPHKVDGRVVEPKRAVSIEDSQ-RPGAYL--NMK-IFVGAIKEDTEEHHLRDYFGQY 123
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVRA 451
G+ IE+ + S K++ F FVTFD D+ + K ++N N E+ + +K ++ +
Sbjct: 124 GKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQEMAS 183
Query: 452 RLSRPLQRGK 461
S QRG+
Sbjct: 184 ASSS--QRGR 191
Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 42/143 (29%), Positives = 72/143 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT----ELKNPVINGKQC-GVT 271
F Q G +T+ +M +P TK+++GF F+ +ATVE+ A+ ++ V+ K+ +
Sbjct: 30 FEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSIE 89
Query: 272 PSQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
SQ +F+G I + + L++ YG E + +V D + G RGFAF+
Sbjct: 90 DSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYG--KTEVIEIVTDRGS-GKKRGFAFV 146
Query: 327 EFSSRSDAMDAFKRLQKRDVLFG 349
F R D++D +QK + G
Sbjct: 147 TFDDR-DSVDKIV-IQKYHTVNG 167
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 159 (61.0 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 50/186 (26%), Positives = 91/186 (48%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+ LF+G I + ++ LK + +G + +LT+++D G+++G AFL + +R A
Sbjct: 5 DAIKLFVGQIPRHLEEKDLKPIFEQFG--RIFELTVIKDKYT-GLHKGCAFLTYCARDSA 61
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
+ A L ++ L G++RP +V ADS GD + +FV L ++ VR++
Sbjct: 62 LKAQSALHEQKTLPGMNRPIQVKPADSE-SRGD------RKLFVGMLGKQQTDEDVRKMF 114
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+ +G I + + R P K FV F TH A +++++ G + + V
Sbjct: 115 EPFGTIDECTVLRG-PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFAD 173
Query: 455 RPLQRG 460
+RG
Sbjct: 174 TEKERG 179
Score = 138 (53.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 47/168 (27%), Positives = 85/168 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F Q G + E+ ++ + T +KG AFL + + +A+ A+ E K P +N + V P
Sbjct: 27 FEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMN-RPIQVKP 85
Query: 273 SQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327
+ DS++ LF+G + K T E +++ + +G +++ T++ +G ++G AF++
Sbjct: 86 A-DSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT--IDECTVLRGP--DGTSKGCAFVK 140
Query: 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
F + ++A A L L G V FAD+ + G M QV T
Sbjct: 141 FQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVAT 188
Score = 82 (33.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 17/81 (20%), Positives = 42/81 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + + K FGFV+FD +A +++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 442 NGFQIG----MKRLKVQLKRP 458
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 141 (54.7 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 45/168 (26%), Positives = 81/168 (48%)
Query: 293 LKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352
LK + +G + +LT+++D G+++G AFL + +R A+ A L ++ L G++R
Sbjct: 25 LKPIFEQFG--RIFELTVIKDKYT-GLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNR 81
Query: 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA 412
P +V ADS GD + +FV L ++ VR++ + +G I + + R P
Sbjct: 82 PIQVKPADSE-SRGD------RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDG 133
Query: 413 KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRG 460
K FV F TH A +++++ G + + V +RG
Sbjct: 134 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG 181
Score = 138 (53.6 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 47/168 (27%), Positives = 85/168 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F Q G + E+ ++ + T +KG AFL + + +A+ A+ E K P +N + V P
Sbjct: 29 FEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMN-RPIQVKP 87
Query: 273 SQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327
+ DS++ LF+G + K T E +++ + +G +++ T++ +G ++G AF++
Sbjct: 88 A-DSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT--IDECTVLRGP--DGTSKGCAFVK 142
Query: 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
F + ++A A L L G V FAD+ + G M QV T
Sbjct: 143 FQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVAT 190
Score = 82 (33.9 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 17/81 (20%), Positives = 42/81 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + + K FGFV+FD +A +++
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 443 NGFQIG----MKRLKVQLKRP 459
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 166 (63.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 60/201 (29%), Positives = 97/201 (48%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRS-DAMDA 337
LF+G + T E+L+ + +G+ + D + D N +G +RGF F+ ++ + + +DA
Sbjct: 16 LFIGGLSLEITNESLRSHSEQWGM--LTDRVVRRDPNTKG-SRGFGFITCTTATVEEVDA 72
Query: 338 FKRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396
+ V V P + VS DS PG + VK FV G+ +E +R+ +
Sbjct: 73 AMNARPHKVDGRVVEPKRAVSREDSQ-RPGAHLT--VKKTFVGGIKEDTEEHHLRDYFEQ 129
Query: 397 YGEITKIELARNMPSAKRKDFGFVTFDTHDAA--VTCAK--SIN--NAELGEGDNKAKVR 450
YG+I IE+ + S KR F FVTFD HD+ + K ++N N E+ + +K +
Sbjct: 130 YGKIEVIEIMIDPGSGKRS-FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKKALSKQEQT 188
Query: 451 ARLSRPLQR-GKGKHASRGDF 470
+ S R G G G F
Sbjct: 189 SVSSSQRDRSGSGNFGHGGGF 209
Score = 43 (20.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 744 GSDVGGSSYSSMY 756
G D GGSS SS Y
Sbjct: 290 GGDYGGSSNSSSY 302
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 162 (62.1 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 49/186 (26%), Positives = 91/186 (48%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+ LF+G I + ++ LK + +G + +LT+++D G+++G AFL + +R A
Sbjct: 5 DAIKLFVGQIPRHLEEKDLKPIFEQFG--RIFELTVIKDKYT-GLHKGCAFLTYCARDSA 61
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
+ A L ++ L G++RP +V ADS E + + +FV L ++ VR++
Sbjct: 62 LKAQSALHEQKTLPGMNRPIQVKPADS------ESRGEDRKLFVGMLGKQQTDEDVRKMF 115
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+ +G I + + R P K FV F TH A +++++ G + + V
Sbjct: 116 EPFGTIDECTVLRG-PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFAD 174
Query: 455 RPLQRG 460
+RG
Sbjct: 175 TEKERG 180
Score = 136 (52.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 47/169 (27%), Positives = 85/169 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F Q G + E+ ++ + T +KG AFL + + +A+ A+ E K P +N + V P
Sbjct: 27 FEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMN-RPIQVKP 85
Query: 273 SQDSDT------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
+ DS++ LF+G + K T E +++ + +G +++ T++ +G ++G AF+
Sbjct: 86 A-DSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT--IDECTVLRGP--DGTSKGCAFV 140
Query: 327 EFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+F + ++A A L L G V FAD+ + G M QV T
Sbjct: 141 KFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVAT 189
Score = 82 (33.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 17/81 (20%), Positives = 42/81 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + + K FGFV+FD +A +++
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 392 NGFQIG----MKRLKVQLKRP 408
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 175 (66.7 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 50/171 (29%), Positives = 84/171 (49%)
Query: 269 GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
G QD+ LF+G I + ++ LK + +G + +LT+++D GM++G AFL +
Sbjct: 128 GTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFG--KIHELTVLKDRYT-GMHKGCAFLTY 184
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDED 388
+R A+ A L ++ L G+ RP +V ADS E + + +FV L E+
Sbjct: 185 CARESAIKAQNALHEQKTLPGMTRPIQVKPADS------ESRGEDRKLFVGMLNKQQTEE 238
Query: 389 RVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
V L + YG I + + R P K FV F TH A + +++ ++
Sbjct: 239 DVYRLFEPYGVIEECTVLRG-PDGNSKGCAFVKFSTHAEAQSAISALHGSQ 288
Score = 120 (47.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 39/134 (29%), Positives = 71/134 (52%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVING--KQCGVTPS 273
F Q G++ E+ ++ + T +KG AFL + E A +A L + + G + V P+
Sbjct: 156 FEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNALHEQKTLPGMTRPIQVKPA 215
Query: 274 QDSDT------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327
DS++ LF+G + K T+E + + YGV +E+ T++ +G ++G AF++
Sbjct: 216 -DSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGV--IEECTVLRGP--DGNSKGCAFVK 270
Query: 328 FSSRSDAMDAFKRL 341
FS+ ++A A L
Sbjct: 271 FSTHAEAQSAISAL 284
Score = 80 (33.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 17/81 (20%), Positives = 43/81 (53%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + ++ + ++ +G + ++ + + + K FGFV+FD +A +++
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 574 NGFQIG----MKRLKVQLKRP 590
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 168 (64.2 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 47/150 (31%), Positives = 73/150 (48%)
Query: 320 NRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVD 379
+RGF F+ FSS ++ +DA + + V P + + PG + VK +FV
Sbjct: 9 SRGFGFVTFSSMAE-VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVT--VKKLFVG 65
Query: 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
G+ +E +R+ + YG+I IE+ + S K++ FGFVTFD HD +
Sbjct: 66 GIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV--LQKYH 123
Query: 440 LGEGDNKAKVRARLSRP-LQRGKGKHASRG 468
G N A+VR LSR +Q + + RG
Sbjct: 124 TINGHN-AEVRKALSRQEMQEVQSSRSGRG 152
Score = 39 (18.8 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 673 GGGAPQYGDAYG 684
GGG P YG+ G
Sbjct: 218 GGGGPGYGNQGG 229
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 126 (49.4 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 44/163 (26%), Positives = 74/163 (45%)
Query: 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG--MNRGFAFLEFSSRSDAM 335
TLF+ N+ + T+E LK G ++ T+ + N G ++ GF F+E+ A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 336 DAFKRLQ-------KRDVLFG--VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWD 386
A K+LQ K +V +PA S + P + +++ V +P +
Sbjct: 781 KALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQV-PKKQTTSKI---LVRNIPFQAN 836
Query: 387 EDRVRELLKNYGEITKIELARNMP-SAKRKDFGFVTFDT-HDA 427
+ +REL +GE+ + L + M + + FGFV F T DA
Sbjct: 837 QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 879
Score = 95 (38.5 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273
FS G ++E+ ++ TKK KGFAF+ F E A +A E+ V G+ V PS
Sbjct: 420 FSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 476
Score = 80 (33.2 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
V Q + + + NI + ++E +G ++ + L + G +RGF F++F
Sbjct: 817 VPKKQTTSKILVRNIPFQANQREIRELFSTFG--ELKTVRLPKKMTGTGAHRGFGFVDFI 874
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
++ DA AF L L+G R + +ADS
Sbjct: 875 TKQDAKKAFNALCHSTHLYG--RRLVLEWADS 904
Score = 50 (22.7 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 62 EPKSDVNGSVPATQKEDEVKESVDEYEK 89
+PK SVP+ K+D+ K+ + EK
Sbjct: 98 QPKQPSQDSVPSDTKKDKKKKGPSDLEK 125
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 172 (65.6 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 272 PSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
P +D D LF+G I + ++ LK + +G + +LT+++D GM++G AFL +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFT-GMHKGCAFLTYC 103
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDR 389
R A+ A L ++ L G++RP +V ADS GD + +FV L ED
Sbjct: 104 ERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGD------RKLFVGMLNKQQSEDD 156
Query: 390 VRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
VR L + +G I + + R P K FV + +H A +++ ++ G + + V
Sbjct: 157 VRRLFEAFGNIEECTILRG-PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLV 215
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 42/154 (27%), Positives = 82/154 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F + G++ E+ ++ + T +KG AFL + E +A+ A+ E K P +N + V P
Sbjct: 74 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN-RPIQVKP 132
Query: 273 SQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327
+ DS++ LF+G + K +++ ++ + +G N+E+ T++ +G ++G AF++
Sbjct: 133 A-DSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG--NIEECTILRGP--DGNSKGCAFVK 187
Query: 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
+SS ++A A L + G V FAD+
Sbjct: 188 YSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 221
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 162 (62.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 49/186 (26%), Positives = 91/186 (48%)
Query: 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
D+ LF+G I + ++ LK + +G + +LT+++D G+++G AFL + +R A
Sbjct: 5 DAIKLFVGQIPRHLEEKDLKPIFEQFG--RIFELTVIKDKYT-GLHKGCAFLTYCARDSA 61
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELL 394
+ A L ++ L G++RP +V ADS E + + +FV L ++ VR++
Sbjct: 62 LKAQSALHEQKTLPGMNRPIQVKPADS------ESRGEDRKLFVGMLGKQQTDEDVRKMF 115
Query: 395 KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454
+ +G I + + R P K FV F TH A +++++ G + + V
Sbjct: 116 EPFGTIDECTVLRG-PDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFAD 174
Query: 455 RPLQRG 460
+RG
Sbjct: 175 TEKERG 180
Score = 136 (52.9 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 47/169 (27%), Positives = 85/169 (50%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F Q G + E+ ++ + T +KG AFL + + +A+ A+ E K P +N + V P
Sbjct: 27 FEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMN-RPIQVKP 85
Query: 273 SQDSDT------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFL 326
+ DS++ LF+G + K T E +++ + +G +++ T++ +G ++G AF+
Sbjct: 86 A-DSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT--IDECTVLRGP--DGTSKGCAFV 140
Query: 327 EFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+F + ++A A L L G V FAD+ + G M QV T
Sbjct: 141 KFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVAT 189
Score = 82 (33.9 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 17/81 (20%), Positives = 42/81 (51%)
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+F+ LP + + + ++ +G + ++ + + + K FGFV+FD +A +++
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N ++G +++ +L RP
Sbjct: 438 NGFQIG----MKRLKVQLKRP 454
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 150 (57.9 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 54/191 (28%), Positives = 90/191 (47%)
Query: 279 LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338
LF+G + +++L+E + + + D ++ D + F F+ +S + +DA
Sbjct: 9 LFIGGLSFETIEDSLREGFE---MGTLADCVVMRDPQS------FGFVTYSCVEE-VDAA 58
Query: 339 KRLQKRDVLFGVDRPAK-VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397
+ V V P + VS DS + PG + VK +FV G+ +E +R+ + Y
Sbjct: 59 MCARPHKVDGRVVEPKRAVSREDS-VKPGAHLT--VK-IFVGGIKEDAEEYNLRDYFEKY 114
Query: 398 GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457
G+I IE+ + S K++ F FVTFD HD T K + N G N +VR LS+
Sbjct: 115 GKIETIEVMEDRQSGKKRGFAFVTFDDHD---TVDKIVVNYHTINGHN-CEVRKALSKQE 170
Query: 458 QRGKGKHASRG 468
+ G + G
Sbjct: 171 MQSAGSQSGHG 181
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 172 (65.6 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 272 PSQDSDT--LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329
P +D D LF+G I + ++ LK + +G + +LT+++D GM++G AFL +
Sbjct: 47 PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFT-GMHKGCAFLTYC 103
Query: 330 SRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDR 389
R A+ A L ++ L G++RP +V ADS GD + +FV L ED
Sbjct: 104 ERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGD------RKLFVGMLNKQQSEDD 156
Query: 390 VRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449
VR L + +G I + + R P K FV + +H A +++ ++ G + + V
Sbjct: 157 VRRLFEAFGNIEECTILRG-PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLV 215
Score = 131 (51.2 bits), Expect = 6.7e-07, Sum P(2) = 6.6e-07
Identities = 42/154 (27%), Positives = 82/154 (53%)
Query: 217 FSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE---QARQAVTELKN-PVINGKQCGVTP 272
F + G++ E+ ++ + T +KG AFL + E +A+ A+ E K P +N + V P
Sbjct: 74 FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN-RPIQVKP 132
Query: 273 SQDSDT-----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327
+ DS++ LF+G + K +++ ++ + +G N+E+ T++ +G ++G AF++
Sbjct: 133 A-DSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG--NIEECTILRGP--DGNSKGCAFVK 187
Query: 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361
+SS ++A A L + G V FAD+
Sbjct: 188 YSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 221
Score = 60 (26.2 bits), Expect = 6.7e-07, Sum P(2) = 6.6e-07
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 417 FGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456
FGFV+FD +A T +++N ++G +++ +L RP
Sbjct: 432 FGFVSFDNPASAQTAIQAMNGFQIG----MKRLKVQLKRP 467
WARNING: HSPs involving 456 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 776 535 0.00093 119 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 706
No. of states in DFA: 612 (65 KB)
Total size of DFA: 289 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.34u 0.10s 46.44t Elapsed: 00:00:07
Total cpu time: 46.42u 0.10s 46.52t Elapsed: 00:00:07
Start: Mon May 20 16:42:45 2013 End: Mon May 20 16:42:52 2013
WARNINGS ISSUED: 2