BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004060
(776 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 191
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 192 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 249
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 302 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 330
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 16/272 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+FVG + +D+ D+L +F + G + ++RLMM+P T N+G+AF+ F T E A++AV
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
N I +GK GV S ++ LF+G+I K+ TKE + E+ + + D+ L ++
Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV-TEGLTDVILYHQPDD 281
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD DP E+MA+VK
Sbjct: 282 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG--NVGTVEWADPIEDPDPEVMAKVKV 339
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ F+ FD D AV + +
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEEM 391
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASR 467
N +L EG+N V A+ P Q+ K + A R
Sbjct: 392 NGKDL-EGENIEIVFAK--PPDQKRKERKAQR 420
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L +F + G + ++RLMM+P + +N+G+AF+ F E A++AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
+ I GK GV S ++ LF+G+I K TKE + E+ + + D+ L ++
Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKV-TEGLVDVILYHQPDD 284
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-LFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGF FLE+ A A +RL V ++G V +AD +P E+MA+VK
Sbjct: 285 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPDPEVMAKVKV 342
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
+FV L + E+ + + +G++ +++ K KD+ FV F+ AAV +
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEM 394
Query: 436 N 436
N
Sbjct: 395 N 395
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 74 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVTYCHKGEAKRAVRE 132
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 133 LNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 191
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 192 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 249
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV S+
Sbjct: 250 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFASREDAVLAMNSL 303
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 304 NGTEL-EGSC---LEVTLAKPVDK 323
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 142/264 (53%), Gaps = 16/264 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K +E + E++ + V D+ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMETVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L ED ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEDTIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPLQR 459
N EL EG + L++P+ +
Sbjct: 302 NGTEL-EGSC---LEVTLAKPVDK 321
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 151/283 (53%), Gaps = 22/283 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ +A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K L R L+G V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWG--HGIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ + + N G + +++ K +D+ FV F + AV K
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNREDAVEAMK 284
Query: 434 SINNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
++N G+ + + + L++P+ + +RG GRGT
Sbjct: 285 ALN----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRGT 321
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K + + E++ + V ++ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ K++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEETIK---KSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYSRYQKAAKG 333
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 148/276 (53%), Gaps = 19/276 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +DV D+L VF VG + E+RLMM+ KN+G+AF+ + +A++AV E
Sbjct: 72 EVFVGKIPRDVYEDELVPVFETVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRE 130
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I K + + E++ + V ++ + + +
Sbjct: 131 LNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKV-TEGVLNVIVYASAAD 189
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + R L+G V +A+ ID +++M VK
Sbjct: 190 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPEIDVDEDVMQTVKI 247
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L E+ ++ +++G+ + R K +D+ FV F + + AV ++
Sbjct: 248 LYVRNLMIETTEETIK---RSFGQFNPGCVER---VKKIRDYAFVHFTSREDAVHAMNNL 301
Query: 436 NNAELGEGDNKAKVRARLSRPL---QRGKGKHASRG 468
N EL EG + + L++P+ Q + + A++G
Sbjct: 302 NGTEL-EG---SCLEVTLAKPVDKEQYSRYQKAAKG 333
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 149/281 (53%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+R+MM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I NG+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 148/281 (52%), Gaps = 18/281 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
E+F+G L +D+ D+L + ++G++ E+RLMM+ N+G+AF+ F+ ++A+ A+ +
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115
Query: 258 LKNPVI-NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I G+ GV S D+ LF+G I KT +E + ++K + V D+ + + +
Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKV-TEGVVDVIVYPSAAD 174
Query: 317 EGMNRGFAFLEFSSRSDAMDAFKRLQK-RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S A A +RL R L+G P V +A+ ++ ++ M+ VK
Sbjct: 175 KTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWG--HPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ + K + I + R K +D+ FV F + AV K++
Sbjct: 233 LYVRNLMLSTSEEMIE---KEFNSIKPGAVER---VKKIRDYAFVHFSNREDAVEAMKAL 286
Query: 436 NNAELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGT 476
N G+ + + + L++P+ + +RG GR T
Sbjct: 287 N----GKVLDGSPIEVTLAKPVDKDSYVRYTRGT--GGRNT 321
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 180
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 181 AQDEN--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 234
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
DE+ A ++V + +D R L + YG++T LAR+ + K + FGFV F +H
Sbjct: 235 -DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSH 293
Query: 426 DAAVTCAKSINNAEL 440
+ A + +N E
Sbjct: 294 EDASKAVQELNEKEF 308
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFSKFKPGAVERVK--------KLRDYAFVHFFHREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 142/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF + G++ E RLMM + +N+G+AF+ + T E+A+ A+
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G I K KE + +++K + V D+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKV-TEGVVDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+E+ S R+ AM K + L+G +V +AD + +E M +VK
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDEETMQRVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ + G + +++ K +D+ FV F + AV A
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERVK--------KLRDYAFVHFFNREDAVA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N + +G A + L++P+ +
Sbjct: 289 SVMNGKCIDG---ASIEVTLAKPVNK 311
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG--NILSCKV 174
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L + V G AK F
Sbjct: 175 AQDE--FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVG-HHIAKKDRQSKF--- 228
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + E+ R+L + +GEIT LAR+ S K + FGFV F +H
Sbjct: 229 -EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 426 DAAVTCAKSINNAEL 440
D A +++N+ +
Sbjct: 288 DNAAAAVEALNDKDF 302
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E +NA + + D + H + ++ R+ K FE V+V +D+D
Sbjct: 189 HYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK-FEEMKANFTNVYVKNIDQDT 247
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ R +F + GE+T L + ++ K++GF F+ F + + A AV L + G++
Sbjct: 248 TEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 269 GVTPSQ 274
V +Q
Sbjct: 308 YVGRAQ 313
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
K+KGF F+ F++ ++A +AVTE+ +++GK V +Q D
Sbjct: 431 KSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 173
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 174 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 225
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ L + D+D R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 284
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 285 HESAQAAVEEMNDKEI 300
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V++ LD ++ D+ RK+F + GE+T L + Q K++GF F
Sbjct: 222 DRQSKFEEM-KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKSRGFGF 279
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F+T E A+ AV E+ + I ++ V +Q
Sbjct: 280 VNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQ 311
Score = 37.0 bits (84), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
K+KGF F+ F++ ++A +AVTE+ ++NGK V +Q D
Sbjct: 433 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 475
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 141/266 (53%), Gaps = 20/266 (7%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D L +F++ G++ E RLMM + +N+G+AF+ + E+A A+
Sbjct: 62 EVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIRM 120
Query: 258 LKN-PVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N + GK GV S D+ LF+G+I + KE + E++K + V D+ + + +
Sbjct: 121 LNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKV-TEGVMDVIVYPSATD 179
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
+ NRGFAF+ + S R+ AM K + L+G KV++A + +E M +VK
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWG--HTIKVAWASPEKEVDEETMQKVKV 237
Query: 376 VFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433
++V L S E+ ++ Y G + +++ K +D+ FV F D A+ A
Sbjct: 238 LYVRNLMMSTTEETIKAEFNRYKPGVVERVK--------KIRDYAFVHFFRRDYAIA-AM 288
Query: 434 SINNAELGEGDNKAKVRARLSRPLQR 459
S+ N L +G A++ L++P+ +
Sbjct: 289 SVMNGRLIDG---ARIEVTLAKPVNK 311
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + T +A+ EL
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ + +F+ N+ +AL + +G N+ +
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG--NILSCKV 179
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D + G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 180 AQDEH--GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK-DRQSKF--- 233
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A V+V + ++ REL +GE+T LAR+ K + FGFV F TH
Sbjct: 234 -EEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTH 291
Query: 426 DAAVTCAKSIN 436
+AA +N
Sbjct: 292 EAAAQAVDELN 302
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V+V ++ +V ++ R++F++ GEVT L + Q K++GF F
Sbjct: 228 DRQSKFEEM-KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGF 285
Query: 243 LRFATVEQARQAVTEL 258
+ F T E A QAV EL
Sbjct: 286 VNFTTHEAAAQAVDEL 301
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 40/131 (30%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK------------ 235
++ K + +++ L DV D LR +FS+ G +T ++M + +
Sbjct: 335 LEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKEN 394
Query: 236 ----------------------------KNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267
K+KGF F+ F+ + A +AVTE+ +++GK
Sbjct: 395 KKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKP 454
Query: 268 CGVTPSQDSDT 278
V +Q D
Sbjct: 455 LYVALAQRKDV 465
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FSQ+G V +R+ + T+++ G+A++ + + +A+ EL
Sbjct: 67 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEEL 126
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 127 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG--NILSCKV 184
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D N G ++G+ F+ + + A A K L ++ V G P K F
Sbjct: 185 AQDEN--GNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKK-DRQSKF--- 238
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ R+L YG++T LAR+ K + FGFV F TH
Sbjct: 239 -EEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTH 296
Query: 426 DAAVTCAKSINNAEL 440
+ A + +N E
Sbjct: 297 ECAAKAVEELNGKEF 311
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 148 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAA 206
Query: 252 RQAVTELKNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKL 297
QA+ + N ++N K+ V P +D + +++ NI T E ++
Sbjct: 207 AQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLF 266
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
YG +V +L DS EG +RGF F+ F++ A A + L ++ L+ V R
Sbjct: 267 AKYG--DVTSSSLARDS--EGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLY-VGRA 321
Query: 354 AKV---------SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIE 404
K S+ + ++ ++ Q +++ L D+D++R++ YG IT +
Sbjct: 322 QKKHEREEELRKSYEAARLEKANKY--QGVNLYIKNLADDIDDDKLRQMFSEYGPITSAK 379
Query: 405 LARN 408
+ R+
Sbjct: 380 VMRD 383
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 268 CGVTPS------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321
G TPS Q S +L++G + + T+ L E G +V + + D+ +
Sbjct: 50 AGPTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIG--SVASIRVCRDTITR-RSL 106
Query: 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGL 381
G+A++ ++S SD A + L + RP ++ ++ DP Q VF+ L
Sbjct: 107 GYAYVNYNSTSDGEKALEELNYTLI---KGRPCRIMWSQR--DPALRKTGQ-GNVFIKNL 160
Query: 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
+ D + + +G I ++A++ + K +GFV ++T +AA K +NN L
Sbjct: 161 DVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLN 219
Query: 442 E 442
E
Sbjct: 220 E 220
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 73/216 (33%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V++ E + V+E+ +E D VG ++ + EEE+
Sbjct: 288 FGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKH--------------EREEELRK 333
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
+ E A ++ K + +++ L D+ D LR++FS+ G +T
Sbjct: 334 SYEAAR---------------LEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSA 378
Query: 227 RLMMNPQTK--------------------------------------------KNKGFAF 242
++M + T+ K+KGF F
Sbjct: 379 KVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGF 438
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
+ F+ + A +AV E+ +I GK V +Q D
Sbjct: 439 VCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDV 474
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 139/261 (53%), Gaps = 16/261 (6%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
EVFVG + +D+ D+L VF Q G + E RLMM + +N+G+AF+ + T E+A++A+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMME-FSGENRGYAFVMYTTREKAQRAIQL 104
Query: 258 LKNPVIN-GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316
L N I GK GV S D+ LF+G+I K KE ++E++ + V D+ + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKV-TEGVMDVIVYPSAVD 163
Query: 317 EGMNRGFAFLEF-SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKT 375
NRGFAF+E+ S ++ AM K + L+G +V +A+ + +E M +V+
Sbjct: 164 RMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWG--HTIQVDWAEPEKELDEETMQRVRV 221
Query: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435
++V L S E+ +R E ++++ K D+ F+ F + A+T +S+
Sbjct: 222 LYVRNLMLSTTEETLR------SEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESM 275
Query: 436 NNAELGEGDNKAKVRARLSRP 456
N G+ + + + L++P
Sbjct: 276 N----GKVIDGSPIEVTLAKP 292
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 169 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 220
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ + E+ REL + +GEIT L+R+ K + FGFV F T
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 279
Query: 425 HDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 280 HESAQAAVDEMNEKEI 295
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 132 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 190
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI + T+E +E
Sbjct: 191 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D EG +RGF F+ FS+ A A + ++++ + V
Sbjct: 251 EKFG--EITSATLSRD--QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIR---TQKLYVG 303
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++REL YG IT +
Sbjct: 304 RAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAK 363
Query: 405 LARN 408
+ R+
Sbjct: 364 VMRD 367
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E V++ +D+DV ++ R++F + GE+T L + Q K+
Sbjct: 211 HHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD-QEGKS 269
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+T E A+ AV E+ I ++ V +Q
Sbjct: 270 RGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQ 306
Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
K+KGF F+ F++ ++A +AVTE+ ++NGK V +Q D
Sbjct: 431 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 473
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 121/256 (47%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ EL
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 161
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G+++G+ F+ + + A +A K + G+ K F I D
Sbjct: 162 AQDEF--GVSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 213
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A +++ + +++ R+L + +GEIT L+R+ K + FGFV F T
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFST 272
Query: 425 HDAAVTCAKSINNAEL 440
H++A + +N+ E+
Sbjct: 273 HESAQAAVEEMNDKEV 288
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI E ++
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL DS EG +RGF F+ FS+ A A + + ++V + V
Sbjct: 244 EKFG--EITSATLSRDS--EGKSRGFGFVNFSTHESAQAAVEEMNDKEVR---SQKLYVG 296
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D+D++REL YG IT +
Sbjct: 297 RAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAK 356
Query: 405 LARN 408
+ R+
Sbjct: 357 VMRD 360
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 184 HHEMFQERRKRKE------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKN 237
HH ++R+ + E +++ +D +V ++ RK+F + GE+T L + + K+
Sbjct: 204 HHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKS 262
Query: 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+GF F+ F+T E A+ AV E+ + + ++ V +Q
Sbjct: 263 RGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQ 299
Score = 37.0 bits (84), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
K+KGF F+ F++ ++A +AVTE+ ++NGK V +Q D
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 457
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 168 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 219
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ L E+ R++ + +GEIT L+R+ K + FGFV + T
Sbjct: 220 KFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ-EGKSRGFGFVNYST 278
Query: 425 HDAAVTCAKSINNAEL 440
HD+A +N+ E+
Sbjct: 279 HDSAQAAVDEMNDKEV 294
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 35/244 (14%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 131 RKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 189
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ N+ + ++E ++
Sbjct: 190 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMF 249
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D EG +RGF F+ +S+ A A + ++V + V
Sbjct: 250 EKFG--EITSATLSRD--QEGKSRGFGFVNYSTHDSAQAAVDEMNDKEV---KGQKLYVG 302
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++RE+ YG IT +
Sbjct: 303 RAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAK 362
Query: 405 LARN 408
+ R+
Sbjct: 363 VMRD 366
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V++ LD+++ ++ R++F + GE+T L + Q K++GF F
Sbjct: 216 DRQSKFEEM-KANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRD-QEGKSRGFGF 273
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGV 302
+ ++T + A+ AV E+ + + G++ V +Q + K + L++ K+ GV
Sbjct: 274 VNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHER-EEELRKQYEAARLEKASKYQGV 332
Query: 303 DNVEDLTLVEDSNNEGMNRGFA 324
N+ L +D ++E + FA
Sbjct: 333 -NLYVKNLTDDIDDEKLREMFA 353
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
K+KGF F+ F++ ++A +AVTE+ +INGK V +Q D
Sbjct: 421 KSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDV 463
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 19/253 (7%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + T + G+A++ F E +A+ +L
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ S +++ N+ ++L E +G N+ +
Sbjct: 100 NYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG--NILSCKV 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID---PGD 367
D N G++RGF F+ F + SDA DA ++ D + D+ V+ S D +
Sbjct: 158 ATDEN--GVSRGFGFVHFENESDARDA---IEAVDGMLMNDQEVYVALHVSKKDRQSKLE 212
Query: 368 EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
E+ A+ V+V + ++ EL YG+IT L ++ K + FGFV F+ H A
Sbjct: 213 EVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAA 271
Query: 428 AVTCAKSINNAEL 440
A +N E
Sbjct: 272 AAKAVDELNELEF 284
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L++ F+ G +T ++M + +T ++GF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQ 274
++ GK V +Q
Sbjct: 383 NQQIVAGKPLYVAIAQ 398
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K K V+V +D++ ++ ++F + G++T L + + K +GF F+ F
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKL-RGFGFVNFEDHA 270
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDS------------------------DTLFLGNIC 285
A +AV EL G++ V +Q LF+ N+
Sbjct: 271 AAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLD 330
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
+ E LKE+ +G + ++ D G +RGF F+ FS+ +A A ++
Sbjct: 331 DSIDDEKLKEEFAPFG--TITSAKVMRDET--GNSRGFGFVCFSTPEEATKAITEKNQQI 386
Query: 346 VLFGVDRPAKVSFA 359
V +P V+ A
Sbjct: 387 V---AGKPLYVAIA 397
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 113 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG--NILSCKV 170
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+D G ++G+ F+ + + A +A K L + V G DR +K
Sbjct: 171 AQDEF--GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF---- 224
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
DE+ A +++ + E+ R++ + +GEIT L+R+ P K + FGFV
Sbjct: 225 ------DEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRD-PEGKSRGFGFV 277
Query: 421 TFDTHDAAVTCAKSINNAEL 440
+ TH++A +++ E+
Sbjct: 278 NYSTHESAQAAVDEMHDKEV 297
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 35/252 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK + VF+ LD + L F+ G + ++ + + +KG+ F+ + T E A
Sbjct: 134 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 192
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ NI T+E ++
Sbjct: 193 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIF 252
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+ +G + TL D EG +RGF F+ +S+ A A + ++V + V
Sbjct: 253 EQFG--EITSATLSRDP--EGKSRGFGFVNYSTHESAQAAVDEMHDKEV---KTQKLYVG 305
Query: 358 FADSFIDPGDEIMAQVKT-------------VFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + +E+ Q + ++V L D++++REL YG IT +
Sbjct: 306 RAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAK 365
Query: 405 LARNMPSAKRKD 416
+ R+ A+R +
Sbjct: 366 VMRDSTPAERTE 377
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
K+KGF F+ F++ ++A +AVTE+ ++NGK V +Q D
Sbjct: 426 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 468
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD ++ L VFS +G ++ +R+ + TK + G+A++ + E ++A+ EL
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
ING+ C + S+ S +F+ N+ +AL E +G V +
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFG--EVLSCKV 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGVDRPAKVSFADSFIDP 365
D N G +RGF F+ F SDA DA + + +V + P K I
Sbjct: 170 ALDEN--GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK-----DRISK 222
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E A ++V + ++ +L YGEI L ++ K K FGFV F H
Sbjct: 223 LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDH 281
Query: 426 DAAVTCAKSINNAEL 440
+AA + +N E
Sbjct: 282 NAAAKAVEELNGKEF 296
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LD + + L++ F+ G +T R+M + Q +KGF F+ F++ E+A +A+TE
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRD-QEGNSKGFGFVCFSSPEEATKAMTEK 394
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 395 NQQIVAGKPLYVAIAQRKDV 414
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + + E +A+ EL
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG--NILSCKV 167
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
+D G ++G+ F+ + + A +A K L ++ V G P K +
Sbjct: 168 AQDE--LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---- 221
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E+ A ++V + ++ REL + +G+IT +AR+ K + FGFV + H
Sbjct: 222 -EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRH 279
Query: 426 DAAVTCAKSINNAEL 440
+AA +N+ E
Sbjct: 280 EAAAVAVDHLNDIEF 294
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D DV +D R++F + G++T + + Q K++GF F+ + E
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQG-KSRGFGFVNYIRHE 280
Query: 250 QARQAVTELKNPVINGKQCGVTPSQ 274
A AV L + G++ V +Q
Sbjct: 281 AAAVAVDHLNDIEFKGQKLYVGRAQ 305
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 236 KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
K+KGF F+ F+ ++A +AVTE+ +I GK V +Q D
Sbjct: 423 KSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDV 465
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 171
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 172 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 223
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ + ++ R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 282
Query: 425 HDAAVTCAKSINNAEL 440
HD+A +N+ E+
Sbjct: 283 HDSAQAAVDEMNDKEI 298
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 183 DHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
D F+E K V++ +D++V ++ RK+F + GE+T L + Q K++GF F
Sbjct: 220 DRQSKFEEM-KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGF 277
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
+ F+T + A+ AV E+ + I G++ V +Q
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 44/135 (32%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK------------ 235
++ K + ++V L DV + LR++FS G +T ++M + T
Sbjct: 327 LEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKES 386
Query: 236 --------------------------------KNKGFAFLRFATVEQARQAVTELKNPVI 263
K+KGF F+ F++ ++A +AVTE+ ++
Sbjct: 387 NKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMV 446
Query: 264 NGKQCGVTPSQDSDT 278
NGK V +Q D
Sbjct: 447 NGKPLYVALAQRKDV 461
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++FS +G+V +R+ + T+++ G+A++ + +A+ +L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK C + SQ L F+ N+ +AL + +G N+ +
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG--NILSCKV 171
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
+D G ++G+ F+ + + A +A K + G+ K F I D
Sbjct: 172 AQDEF--GNSKGYGFVHYETAEAANNAIKHVN------GMLLNDKKVFVGHHISKKDRQS 223
Query: 368 ---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ A V++ + ++ R++ + +GEIT L+R+ K + FGFV F T
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFST 282
Query: 425 HDAAVTCAKSINNAEL 440
HD+A +N+ E+
Sbjct: 283 HDSAQAAVDEMNDKEI 298
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 157 HGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFE--------VFVGGLDKDV 208
H + E NA + + D + H + ++ R+ K FE V++ +D++V
Sbjct: 186 HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK-FEEMKANFTNVYIKNIDQEV 244
Query: 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268
++ RK+F + GE+T L + Q K++GF F+ F+T + A+ AV E+ + I G++
Sbjct: 245 TDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKL 303
Query: 269 GVTPSQ 274
V +Q
Sbjct: 304 YVGRAQ 309
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 46/137 (33%)
Query: 188 FQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK------------ 235
++ K + ++V L DV + LR++FS G +T ++M + T
Sbjct: 327 LEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEK 386
Query: 236 ----------------------------------KNKGFAFLRFATVEQARQAVTELKNP 261
K+KGF F+ F++ ++A +AVTE+
Sbjct: 387 ESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQR 446
Query: 262 VINGKQCGVTPSQDSDT 278
++NGK V +Q D
Sbjct: 447 MVNGKPLYVALAQRKDV 463
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 124/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V +R+ + +KK+ G+A++ + +E +A+ EL
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+ G+ C + SQ + +F+ N+ +AL + +G + L++
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----KILSV 184
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G ++ F F+ + + A A + L R+V G DR +K+
Sbjct: 185 KVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL---- 240
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + ++ E EL +G+IT I L ++ K K FGFV
Sbjct: 241 ------EEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFV 293
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H+AA + +N+ E+
Sbjct: 294 NFEEHEAAAKAVEELNDKEI 313
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 149/387 (38%), Gaps = 58/387 (14%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ L + L FS G++ V++ + ++K F F+ + T E A+ A+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 259 KNPVINGKQCGV---TPSQDSDT-----------LFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +D ++ +++ NI +T++ +E +G
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFG--K 273
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364
+ + L +D+ EG ++GF F+ F A A + L +++ + V A +
Sbjct: 274 ITSIYLEKDA--EGKSKGFGFVNFEEHEAAAKAVEELNDKEI---NGQKIYVGRAQKKRE 328
Query: 365 PGDEIMAQVKTV-------------FVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411
+E+ Q + V FV L D +++ E K +G IT ++ + +
Sbjct: 329 RTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DA 387
Query: 412 AKRKDFGFVTFDTHDAAVTCAKSINN-------AELGEGDNKAKVRARLSRPLQRGKGKH 464
K K FGFV F T + A +N + K R++L + +Q
Sbjct: 388 GKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ------ 441
Query: 465 ASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKRPVPVRDRRPIMSM 524
+R R + GLP P G PP + P P M M
Sbjct: 442 -ARNQMRMQNAA-----AAGGLPGQFMPP--MFYGQQGFFPPNG-RGNAPFPGPNPQMMM 492
Query: 525 TARARPMPPPPPRSYDRRAPVPSYPKP 551
R +P P PR PVP Y P
Sbjct: 493 RGRGQPFPEQWPRPGPNGQPVPVYGMP 519
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 29/181 (16%)
Query: 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249
E K ++V +D + ++F+ G++T + L + + K +KGF F+ F E
Sbjct: 241 EEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGK-SKGFGFVNFEEHE 299
Query: 250 QARQAVTELKNPVINGKQCGVTPSQDSD------------------------TLFLGNIC 285
A +AV EL + ING++ V +Q LF+ N+
Sbjct: 300 AAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLD 359
Query: 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345
+ E L+E+ K +G + +V+D+ G ++GF F+ FS+ +A A + +R
Sbjct: 360 EQIDSEKLEEEFKPFGTITSSKV-MVDDA---GKSKGFGFVCFSTPEEATKAITEMNQRM 415
Query: 346 V 346
V
Sbjct: 416 V 416
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 22/183 (12%)
Query: 265 GKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFA 324
G+ G+ +++S +L++G + + + L E G V + + D+ ++ + G+A
Sbjct: 57 GESSGI--AENSASLYVGELNPSVNEATLFEIFSPIG--QVASIRVCRDAVSKK-SLGYA 111
Query: 325 FLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP-----GDEIMAQVKTVFVD 379
++ + D A + L V RP ++ ++ DP GD +F+
Sbjct: 112 YVNYHKLEDGEKAIEELNYTPV---EGRPCRIMWSQR--DPSARRSGD------GNIFIK 160
Query: 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439
L + D + + +G+I +++A + + K FGFV ++T +AA +S+N
Sbjct: 161 NLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 440 LGE 442
L +
Sbjct: 220 LND 222
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 124/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V +R+ + TKK+ G+A++ F E +A+ +L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ +L F+ N+ +AL + +G + L+
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFG----KILSC 168
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G+++ F F+ + + A A + L R+V G DR +K
Sbjct: 169 KVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKF---- 224
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+ + + E+ ++L + YG+IT I L ++ K K FGFV
Sbjct: 225 ------EEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDH-EGKSKGFGFV 277
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H++AV +N+ E+
Sbjct: 278 NFENHESAVKAVDELNDKEI 297
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+ +D D ++ +K+F G++T + L + + K +KGF F+ F E A +AV EL
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGK-SKGFGFVNFENHESAVKAVDEL 292
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ T E L+
Sbjct: 293 NDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLE 352
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ K +G ++ ++ D G ++GF F+ FSS +A A + +R +++G +P
Sbjct: 353 EEFKPFG--SITSARVMVDET--GKSKGFGFVCFSSPEEATKAITEMNQR-MIYG--KPL 405
Query: 355 KVSFA 359
V+ A
Sbjct: 406 YVALA 410
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LD + + L + F G +T R+M++ +T K+KGF F+ F++ E+A +A+TE+
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEM 395
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+I GK V +Q D
Sbjct: 396 NQRMIYGKPLYVALAQRKDV 415
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + +KK+ G+A++ + +E +A+ EL
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ + +F+ N+ +AL + +G + L+
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFG----KILSC 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
+++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 170 KVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF---- 225
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+EI A ++V + + E+ +++L YG IT I L ++ K K FGFV
Sbjct: 226 ------EEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKD-AEGKSKGFGFV 278
Query: 421 TFDTHDAAVTCAKSINNAEL 440
++ H+AAV + +N+ E+
Sbjct: 279 NYEGHEAAVKAVEELNDKEI 298
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V +D + +DL+K+F+ G +T + L + + K +KGF F+ + E A +AV EL
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGK-SKGFGFVNYEGHEAAVKAVEEL 293
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ T E L+
Sbjct: 294 NDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLE 353
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ K +G + + E G ++GF F+ FSS +A A + +R + FG +P
Sbjct: 354 EEFKPFGTITSARVMVDET----GKSKGFGFVCFSSPEEATKAITEMNQR-MFFG--KPL 406
Query: 355 KVSFA 359
V+ A
Sbjct: 407 YVALA 411
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 170 EAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLM 229
+ +R M + ++ + ++ K + +F+ LD + + L + F G +T R+M
Sbjct: 309 QKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVM 368
Query: 230 MNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++ +T K+KGF F+ F++ E+A +A+TE+ + GK V +Q D
Sbjct: 369 VD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDV 416
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 36/295 (12%)
Query: 164 VENAGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV 223
E E+ E + D +E + E + + ++VG LD V L +FS +G V
Sbjct: 5 TEKTAEQLENLSLQDKQEGTNEE---NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAV 61
Query: 224 TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTL---- 279
+ +R+ + TK + G+A++ F + A+ A+ +L I GK C + SQ +L
Sbjct: 62 SSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKG 121
Query: 280 ----FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF---SSRS 332
F+ N+ +AL + +G N+ + D G ++GF ++ F S S
Sbjct: 122 AGNIFIKNLHPDIDNKALYDTFSVFG--NILSSKVATDET--GKSKGFGYVHFEEDESAS 177
Query: 333 DAMDAFK--RLQKRDVLFG-----VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW 385
+A+DA L +++ G +R +K +E+ A V++ +
Sbjct: 178 EAIDALNGMLLNGQEIYVGPHLSKKERESKF----------EEMKANFTNVYIKNINTET 227
Query: 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440
+ EL+ +G+ + L R P + K FGFV F H+ AV C + +NN E
Sbjct: 228 TDKEFEELVAKFGKTDSVVLERT-PEGENKGFGFVNFVNHEDAVKCVEELNNTEF 281
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 36/265 (13%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G + ++ + +T K+KGF ++ F E A
Sbjct: 118 RKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESA 176
Query: 252 RQAVTELKNPVINGKQCGVTP--------------SQDSDTLFLGNICKTWTKEALKEKL 297
+A+ L ++NG++ V P + +++ NI T + +E +
Sbjct: 177 SEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV 236
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357
+G + ++V + EG N+GF F+ F + DA+ + L + +P V+
Sbjct: 237 AKFGKTD----SVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEF---KGQPLYVN 289
Query: 358 FADSFIDPGDEIMAQVK-------------TVFVDGLPASWDEDRVRELLKNYGEITKIE 404
A + E+ Q + +F+ L S D+ ++ E YG IT +
Sbjct: 290 RAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAK 349
Query: 405 LARNMPSAKRKDFGFVTFDTHDAAV 429
+ + K K FGFV F T + A
Sbjct: 350 VM-TTENGKSKGFGFVCFSTPEEAT 373
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAR 252
K + +F+ LD + L + F+ G +T ++M + K+KGF F+ F+T E+A
Sbjct: 315 KYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEAT 373
Query: 253 QAVTELKNPVINGKQCGVTPSQDSDT 278
+A+TE ++ GK V +Q D
Sbjct: 374 KAITEKNQQIVAGKPLYVAIAQRKDV 399
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G V +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+AF+ F ++ +A D K ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYAFVHFETQ-EAAD--KAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++ ++EL +G+ +++ R+ P+ K K FGFV+++ H+
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A + +N E+ G K + +A L R ++ K + SR
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KG+AF+ F T E A +A+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E+LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG--K 216
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPAK-----V 356
+ ++ D N G ++GF F+ + DA A + + +++ + V R K
Sbjct: 217 TLSVKVMRDPN--GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 357 SFADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
F E +++ + V ++ L + D++++R+ +G IT ++ + +
Sbjct: 275 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSINNAELG 441
K FGFV F + + A +N +G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
++ +KE ++ K + + +P + + +G V Y+ E ++ V+E+ +E
Sbjct: 204 DESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE------- 255
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
G++ V G+ +++VE E + E ++ QER R +
Sbjct: 256 ---------ISGKIIFV----GRAQKKVERQAELKRKFE----------QLKQERISRYQ 292
Query: 197 -FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255
+++ LD + + LRK FS G +T ++M+ + ++KGF F+ F++ E+A +AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 256 TELKNPVINGKQCGVTPSQ 274
TE+ ++ K V +Q
Sbjct: 351 TEMNGRIVGSKPLYVALAQ 369
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 120/260 (46%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + TKK+ G+A++ F +A+ EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+++G+ C + SQ +L F+ N+ +AL + +G L+
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFG----RILSC 175
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGV-----DRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 176 KVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKF---- 231
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A V+V L D + E+ K +G +T + L + K + FGFV
Sbjct: 232 ------EEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFV 284
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H++A+ K +N+ E+
Sbjct: 285 NFENHESALNAVKEMNDKEI 304
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
V+V L +V ++F G VT V L + Q K++GF F+ F E A AV E+
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETD-QEGKSRGFGFVNFENHESALNAVKEM 299
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ I+G++ V +Q LF+ N+ + E L+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E+ K +G + +V+D+ G ++GF F+ FSS +A A + +R +
Sbjct: 360 EEFKPFGTITSARV-MVDDA---GKSKGFGFVCFSSPEEATKAITEMNQRMI 407
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD + + L + F G +T R+M++ K+KGF F+ F++ E+A +A+TE+
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEM 402
Query: 259 KNPVINGKQCGVTPSQDSDT 278
+I GK V +Q D
Sbjct: 403 NQRMIQGKPLYVALAQRKDV 422
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 118/257 (45%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ ++ +AL + +G + L+
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
++ G +RGFAF+ +S+ A A K L + V G V + ++S
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKV---- 219
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E+ AQ V++ + + +L+K +G + L+R+ K FGFV ++
Sbjct: 220 ---EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVS-KGFGFVNYE 275
Query: 424 THDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 276 NHESARKAVDELNEKEV 292
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 125/283 (44%), Gaps = 34/283 (12%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
M+ +R RK + +F+ LD+ + L F+ G++ ++ + + K++GFAF
Sbjct: 120 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAF 178
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTW 288
+ ++T E A A+ + ++N K+ V +++ N+
Sbjct: 179 VHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEV 238
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-- 346
T ++ +K +G +++ + +G+++GF F+ + + A A L +++V
Sbjct: 239 TDAEFEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNG 294
Query: 347 --LFG------VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
L+ +R A++ + +E + ++V L WD+DR+R + +G
Sbjct: 295 KKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFG 354
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
IT ++ R+ S + FGFV + + D A +N +G
Sbjct: 355 TITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIG 396
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 118/257 (45%), Gaps = 27/257 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ + +A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ L F+ N+ ++ +AL + +G + L+
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG----DILSC 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFG--VDRPAKVSFADSFI 363
++ G +RGFAF+ +S+ A A K L + V G V + ++S
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKV---- 219
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+E+ AQ V++ + + +L+K +G + L+R+ K FGFV ++
Sbjct: 220 ---EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVS-KGFGFVNYE 275
Query: 424 THDAAVTCAKSINNAEL 440
H++A +N E+
Sbjct: 276 NHESARKAVDELNEKEV 292
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 125/283 (44%), Gaps = 34/283 (12%)
Query: 187 MFQER----RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAF 242
M+ +R RK + +F+ LD+ + L F+ G++ ++ + + K++GFAF
Sbjct: 120 MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAF 178
Query: 243 LRFATVEQARQAVTELKNPVINGKQCGVTPS--------------QDSDTLFLGNICKTW 288
+ ++T E A A+ + ++N K+ V +++ N+
Sbjct: 179 VHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEV 238
Query: 289 TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV-- 346
T ++ +K +G +++ + +G+++GF F+ + + A A L +++V
Sbjct: 239 TDAEFEDLVKPFG----PTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNG 294
Query: 347 --LFG------VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398
L+ +R A++ + +E + ++V L WD+DR+R + +G
Sbjct: 295 KKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFG 354
Query: 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441
IT ++ R+ S + FGFV + + D A +N +G
Sbjct: 355 TITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIG 396
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 33/260 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L ++FS +G+V+ +R+ + +KK+ G+A++ + E +A+ EL
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 259 KNPVINGKQCGVTPSQDSDT--------LFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ + +F+ N+ +AL + +G + L+
Sbjct: 114 NYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG----KILSC 169
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG-----VDRPAKVSFAD 360
++ G ++ F F+ + + A A + L R+V G DR +K
Sbjct: 170 KVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF---- 225
Query: 361 SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420
+E+ A ++V + ++ E+ +L +G+IT I L ++ K K FGFV
Sbjct: 226 ------EEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFV 278
Query: 421 TFDTHDAAVTCAKSINNAEL 440
F+ H++AV + +N+ E+
Sbjct: 279 NFEDHESAVKAVEELNDKEI 298
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V +D + + K+FS G++T + L + Q K+KGF F+ F E A +AV EL
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ ING++ V +Q LF+ N+ T E L+
Sbjct: 294 NDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLE 353
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346
E+ K +G + + E G ++GF F+ F++ +A A + R +
Sbjct: 354 EEFKPFGTITSAKVMVDE----AGKSKGFGFVCFTTPEEATKAITEMNTRMI 401
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 107 YGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVEN 166
+G V+++D E+ + V+E+ ++E VG ++ +E++ +++
Sbjct: 275 FGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK---RERLEELKKQY--------- 322
Query: 167 AGEEAERPEMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV 226
EA R E + K + +FV LD + + L + F G +T
Sbjct: 323 ---EAVRLEKL--------------AKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSA 365
Query: 227 RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++M++ + K+KGF F+ F T E+A +A+TE+ +INGK V +Q D
Sbjct: 366 KVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDV 416
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L+ V L +FS +G V+ +R+ + TK + G+A++ F E R+A+ +L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I G+ C + SQ S +F+ N+ +AL + +G ++ +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG--DILSSKI 157
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------D 364
D N G ++GF F+ F A +A D L G+ + + +
Sbjct: 158 ATDEN--GKSKGFGFVHFEEEGAAKEAI------DALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 365 PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
+E A ++V + + +++ +EL +G I L ++ K K FGFV ++
Sbjct: 210 QLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEK 268
Query: 425 HDAAVTCAKSINNAEL 440
H+ AV +++N++EL
Sbjct: 269 HEDAVKAVEALNDSEL 284
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 30/269 (11%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK+ +F+ L D+ L FS G++ ++ + + K+KGF F+ F A
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 179
Query: 252 RQAVTELKNPVINGKQCGVTP--------SQDSDT------LFLGNICKTWTKEALKEKL 297
++A+ L ++NG++ V P SQ +T L++ NI T E +E
Sbjct: 180 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 239
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV---LFGVDRPA 354
+G + +L +D+ +G +GF F+ + DA+ A + L ++ V R
Sbjct: 240 AKFGP--IVSASLEKDA--DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 355 KVS-----FADSFIDPGDEIMAQVKTV--FVDGLPASWDEDRVRELLKNYGEITKIELAR 407
K + + E MA+ + V FV L S D++++ E YG IT ++ R
Sbjct: 296 KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR 355
Query: 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436
+ K K FGFV F T + A N
Sbjct: 356 T-ENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+FV LD V + L + F+ G +T ++M + K+KGF F+ F+T E+A +A+TE
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 259 KNPVINGKQCGVTPSQDSDT 278
++ GK V +Q D
Sbjct: 383 NQQIVAGKPLYVAIAQRKDV 402
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 32/185 (17%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++V ++ + + +++F++ G + L + K KGF F+ + E A +AV L
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 259 KNPVINGKQCGVTPSQDSD------------------------TLFLGNICKTWTKEALK 294
+ +NG++ V +Q + LF+ N+ + E L+
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 295 EKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354
E+ YG + E+ G ++GF F+ FS+ +A A ++ V +P
Sbjct: 340 EEFAPYGTITSAKVMRTEN----GKSKGFGFVCFSTPEEATKAITEKNQQIV---AGKPL 392
Query: 355 KVSFA 359
V+ A
Sbjct: 393 YVAIA 397
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 26/243 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L +V L ++F+QVG V+ +R+ + T+++ +A++ + A +A+ L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
N I GK C + SQ +L F+ N+ K +AL + +G N+ +
Sbjct: 72 NNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG--NILSCKV 129
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
V D N ++GF F+ + ++ A A + + + V G + +K +
Sbjct: 130 VTDDGNS--SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK--------ER 179
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
G + VF L D+++ELL+ YGEIT I + + K K FGF F++
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESA 238
Query: 426 DAA 428
+AA
Sbjct: 239 EAA 241
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 25/260 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
VF+ LDK + L FS G + +++ + +KGF F+ + T E A +A+ ++
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158
Query: 259 KNPVINGKQCGVTPSQDS-----------DTLFLGNICKTWTKEALKEKLKHYGVDNVED 307
+ING++ V P + S +F N+ + + LKE L+ YG + +
Sbjct: 159 NGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYG--EITN 216
Query: 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD 367
+T++ D ++G ++GF F F S A + + + + G +P A I+
Sbjct: 217 ITIMAD--DKGKSKGFGFANFESAEAAKNVVEN-ENGKIFHG--KPIYAGRAQKKIEREA 271
Query: 368 EIMAQVKT------VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVT 421
E+ +T +++ + S D D++RE+ +G IT + ++ + K FGFV
Sbjct: 272 ELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVC 331
Query: 422 FDTHDAAVTCAKSINNAELG 441
+ D A +N +G
Sbjct: 332 YTAPDEATRAVTEMNGRMIG 351
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 126 GNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHH 185
N E +NV E E + G+ P G+ ++++E EAE +
Sbjct: 233 ANFESAEAAKNVVENENGKIFHGK----PIYAGRAQKKIE---REAELKHTFET------ 279
Query: 186 EMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRF 245
K + +++ +D + D LR+VFSQ G +T +M + + +KGF F+ +
Sbjct: 280 -------KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 246 ATVEQARQAVTELKNPVINGKQCGVTPSQDSDT 278
++A +AVTE+ +I K V +Q D
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDI 365
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 27/256 (10%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G V +R+ + T+++ G+A++ F +E +A+ EL
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I G+ C + SQ +L F+ N+ +AL + +G + L+
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG----KILSC 197
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFG--VDRPAKVSFADSFI 363
+ G +G+ F+ F S A A + L + V G V R + S ++
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEA-- 255
Query: 364 DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423
+ A V++ L E +L +GEIT + L ++ + K + FGFV +
Sbjct: 256 -----LKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYA 309
Query: 424 THDAAVTCAKSINNAE 439
H+ A +N+ E
Sbjct: 310 NHECAQKAVDELNDKE 325
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/398 (21%), Positives = 148/398 (37%), Gaps = 70/398 (17%)
Query: 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQA 251
RK VF+ LD + L FS G++ ++ ++ + KG+ F+ F +VE A
Sbjct: 163 RKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESA 221
Query: 252 RQAVTELKNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKL 297
A+ + ++N K+ V + +++ N+ T++ +
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLF 281
Query: 298 KHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV----LFGVDRP 353
+G + L+LV+D N++ RGF F+ +++ A A L ++ L+ V R
Sbjct: 282 GQFG--EITSLSLVKDQNDKP--RGFGFVNYANHECAQKAVDELNDKEYKGKKLY-VGRA 336
Query: 354 AKVSFADSFIDPGDEIMAQVK-------TVFVDGLPASWDEDRVRELLKNYGEITKIELA 406
K + + E M K +F+ L D++R++ +G IT ++
Sbjct: 337 QKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIM 396
Query: 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG---------------EGDNKAKVRA 451
+ K K FGFV + T + A +N L +A+++A
Sbjct: 397 TD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQA 455
Query: 452 RLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPGRSARGIGSRLPPASVKR 511
R LQ+ A + G TG G G P P ++ GR
Sbjct: 456 RNQFRLQQQVAAAAGIPAVQYG-ATGPLIYGPGGYPIPAAVNGRG--------------- 499
Query: 512 PVPVRDRRPIMSMTARARPMPPPPPRSYDRRAPVPSYP 549
P++ PM P P + P P YP
Sbjct: 500 -------MPMVPGHNGPMPMYPGMPTQFPAGGPAPGYP 530
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 185 HEMFQERRKRKE------------FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP 232
HE +E RKR E +F+ L +V + L+ FS G +T ++M +
Sbjct: 340 HEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE 399
Query: 233 QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274
Q K+KGF F+ + T E+A +AVTE+ ++ GK V +Q
Sbjct: 400 Q-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 269 GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328
G P+ S +L++G + + T+ L E G V + + D+ + G+A++ F
Sbjct: 74 GTAPT--SASLYVGELDPSVTEAMLFELFNSIG--PVASIRVCRDAVTR-RSLGYAYVNF 128
Query: 329 SSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDED 388
+ D A L + RP ++ ++ DP M VF+ L + D
Sbjct: 129 HNMEDGEKALDELNYTLI---KGRPCRIMWSQR--DPSLRKMG-TGNVFIKNLDPAIDNK 182
Query: 389 RVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448
+ + +G+I ++A + K +GFV FD+ ++A + +N L D K
Sbjct: 183 ALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLL--NDKKVY 239
Query: 449 VRARLSR 455
V +SR
Sbjct: 240 VGHHVSR 246
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV D L + FS VG V +R+ + T+++ G+A++ F + A++A+ +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
+I GK + SQ L F+ N+ K+ + L E +G + L+
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG----KILSS 127
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGD--- 367
S+++G ++G+AF+ F ++S A A + + + + + KV F F + D
Sbjct: 128 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK-----LLKGCKV-FVGRFKNRKDREA 180
Query: 368 EI---MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424
E+ ++ V++ D++R++++ YG+ +++ + S K K FGFV+FD+
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 239
Query: 425 HDAAVTCAKSIN----NAEL---GEGDNKAKVRARLSRPLQRGK 461
H+AA + +N N +L G K + +A L + ++ K
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
++++ LD + + LR FS G ++ V++M + ++KGF + F++ E A +A+TE
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPEDATKAMTE 351
Query: 258 LKNPVINGKQCGVTPSQ 274
+ ++ K + +Q
Sbjct: 352 MNGRILGSKPLSIALAQ 368
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 23/255 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG LD V L ++F+ +G VT VR+ + T+++ G+A++ F +A+ EL
Sbjct: 48 LYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEEL 107
Query: 259 KNPVINGKQCGVTPSQ--------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
I + C + SQ + +++ N+ +AL + +G + L+
Sbjct: 108 NYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFG----QILSC 163
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKR-----LQKRDVLFGVDRPAKVSFADSFIDP 365
++ G +RGF F+ + S A A + L + V G P K SF
Sbjct: 164 KIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVP-KSDRMQSF--- 219
Query: 366 GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH 425
+E VF+ L E EL+ +GE + + L+ N K FGFV + H
Sbjct: 220 -EEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTN-DEGKPTGFGFVDYKEH 277
Query: 426 DAAVTCAKSINNAEL 440
D AV ++ E
Sbjct: 278 DVAVKAIDGLSETEF 292
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 31/202 (15%)
Query: 77 EDEVKESVDEYEKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDEN 136
E E +E V+++ + + L N+ E +P +G VDY EHD
Sbjct: 240 EAEFEELVNKFGETSSVHLSTND-EGKPTGFGFVDYK-----------------EHD--- 278
Query: 137 VGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEHDHHEMFQERRKRKE 196
V + D L+E E + G+ +++ E A E ++ E E+ + K +
Sbjct: 279 VAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLN---------KYQG 329
Query: 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVT 256
+++ LD + D LR F+ G +T ++M++ + K+KGF F+ +++ E+A +AVT
Sbjct: 330 VNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVT 388
Query: 257 ELKNPVINGKQCGVTPSQDSDT 278
E+ + ++ GK V +Q D
Sbjct: 389 EMNHRLVAGKPLYVVLAQRKDV 410
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ +D+ + L+++F + G V++M + ++ K+K
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSK 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGKQ V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
++VG L DV L + FS G + +R+ + T+++ G+A++ F A +A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 259 KNPVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
VI GK + SQ +L F+ N+ K+ +AL + +G N+ +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKV 130
Query: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIM 370
V D N ++G+ F+ F ++ A A ++K + + DR V S + E+
Sbjct: 131 VCDENG---SKGYGFVHFETQEAAERA---IEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 371 AQVK---TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDA 427
A+ K V++ D++R++EL +G +++ + S K K FGFV+F+ H+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 428 AVTCAKSINNAEL-------GEGDNKAKVRARLSRPLQRGKGKHASR 467
A +N EL G K + + L R ++ K +R
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+F+ LDK + L FS G + +++ + +KG+ F+ F T E A +A+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 259 KNPVINGKQCGV--------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304
++N ++ V +++ +++ N + E LKE +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG--- 215
Query: 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF-----KRLQKRDVLFG-----VDRPA 354
L++ ++ G ++GF F+ F DA A K L + + G V+R
Sbjct: 216 -PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414
++ + Q ++V L D++R+R+ +G IT ++ M +
Sbjct: 275 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRS 332
Query: 415 KDFGFVTFDTHDAAVTCAKSIN 436
K FGFV F + + A +N
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 188 FQERRKR--------KEF-EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNK 238
F+ R++R KEF V++ +D+ + L+++F + G V++M + ++ K+K
Sbjct: 173 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSK 231
Query: 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGV------------------TPSQDSDT-- 278
GF F+ F E A++AV E+ +NGKQ V QD T
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 279 ----LFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334
L++ N+ E L+++ +G +T + G ++GF F+ FSS +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGT-----ITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Query: 335 MDAFKRLQKRDVLFGVDRPAKVSFAD 360
A + R V +P V+ A
Sbjct: 347 TKAVTEMNGRIV---ATKPLYVALAQ 369
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 186 EMFQERRKRKE-FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLR 244
+M Q+R R + ++V LD + + LRK FS G +T ++MM + ++KGF F+
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVC 339
Query: 245 FATVEQARQAVTELKNPVINGKQCGVTPSQ 274
F++ E+A +AVTE+ ++ K V +Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 110/246 (44%), Gaps = 33/246 (13%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K+ AL +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV + D+++++EL YG +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRY 246
Query: 423 DTHDAA 428
+TH+AA
Sbjct: 247 ETHEAA 252
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++ LD+ + + L++ FS G ++ ++MM + + KGF + F++ E+A +AV E+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 259 KNPVINGKQCGVTPSQ 274
V+ K VT Q
Sbjct: 362 NGRVVGSKPLHVTLGQ 377
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 110/246 (44%), Gaps = 33/246 (13%)
Query: 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260
VG LD DV D L K F G + R+ +P T+ G+ ++ F A A+ +
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 261 PVINGKQCGVTPSQDSDTL--------FLGNICKTWTKEALKEKLKHYGVDNVEDLTLVE 312
+INGK + SQ D L F+ N+ K+ AL +G N+ +V
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVC 139
Query: 313 DSNNEGMNRGFAFLEFSSRSDAMDAFK-----RLQKRDVLFGV-----DRPAKVSFADSF 362
D N ++G+A++ F S + A A RL R V G +R A+V D
Sbjct: 140 DDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR- 195
Query: 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422
A VFV + D+++++EL YG +++ R+ S K K FGFV +
Sbjct: 196 --------ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRY 246
Query: 423 DTHDAA 428
+TH+AA
Sbjct: 247 ETHEAA 252
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258
+++ LD+ + + L++ FS G ++ ++MM + + KGF + F++ E+A +AV E+
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 259 KNPVINGKQCGVTPSQ 274
++ K VT Q
Sbjct: 362 NGRIVGSKPLHVTLGQ 377
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,793,840
Number of Sequences: 539616
Number of extensions: 17705163
Number of successful extensions: 136343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 3077
Number of HSP's that attempted gapping in prelim test: 76699
Number of HSP's gapped (non-prelim): 27820
length of query: 776
length of database: 191,569,459
effective HSP length: 125
effective length of query: 651
effective length of database: 124,117,459
effective search space: 80800465809
effective search space used: 80800465809
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)