Query 004060
Match_columns 776
No_of_seqs 619 out of 3710
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 3.1E-40 6.7E-45 341.3 30.1 250 194-457 81-331 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 4.4E-38 9.5E-43 353.5 30.5 248 195-457 57-307 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.7E-38 5.9E-43 347.5 28.2 243 196-442 3-338 (352)
4 KOG0145 RNA-binding protein EL 100.0 2.7E-34 5.9E-39 277.2 20.3 246 195-444 40-349 (360)
5 TIGR01628 PABP-1234 polyadenyl 100.0 7.6E-34 1.6E-38 330.6 27.1 236 198-441 2-245 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 4.1E-32 9E-37 316.1 33.9 243 196-444 88-355 (562)
7 TIGR01622 SF-CC1 splicing fact 100.0 4.6E-31 1E-35 300.2 26.2 239 194-443 87-438 (457)
8 KOG0127 Nucleolar protein fibr 100.0 2.2E-31 4.7E-36 281.2 21.1 233 196-435 5-354 (678)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-30 2.3E-35 296.8 25.2 230 196-444 2-342 (481)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.2E-30 4.8E-35 298.8 24.8 239 192-443 171-492 (509)
11 KOG0144 RNA-binding protein CU 100.0 3.5E-30 7.7E-35 265.5 19.1 249 197-449 35-500 (510)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-29 2.6E-34 288.3 25.5 243 197-456 97-479 (481)
13 TIGR01659 sex-lethal sex-letha 100.0 4.1E-29 8.9E-34 268.5 23.5 170 194-454 105-274 (346)
14 TIGR01645 half-pint poly-U bin 100.0 4.9E-27 1.1E-31 264.5 27.1 150 194-346 105-271 (612)
15 KOG0148 Apoptosis-promoting RN 100.0 1.8E-27 4E-32 232.1 20.1 221 195-455 5-236 (321)
16 KOG0123 Polyadenylate-binding 99.9 4E-25 8.7E-30 238.7 20.9 229 198-442 3-235 (369)
17 KOG0123 Polyadenylate-binding 99.9 1.7E-24 3.6E-29 233.9 18.5 235 198-443 78-339 (369)
18 KOG0127 Nucleolar protein fibr 99.9 3.5E-24 7.6E-29 226.9 14.0 236 196-435 117-516 (678)
19 TIGR01645 half-pint poly-U bin 99.9 5.4E-23 1.2E-27 231.9 18.2 171 276-454 107-283 (612)
20 KOG0110 RNA-binding protein (R 99.9 8E-23 1.7E-27 224.0 16.3 245 194-449 383-689 (725)
21 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.8E-22 3.9E-27 222.0 18.4 166 275-451 2-167 (352)
22 KOG0144 RNA-binding protein CU 99.9 7.5E-23 1.6E-27 211.6 12.6 175 276-459 34-208 (510)
23 KOG0148 Apoptosis-promoting RN 99.9 1.1E-21 2.5E-26 191.7 13.0 154 196-361 62-237 (321)
24 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-21 4.6E-26 221.0 17.1 162 274-442 87-255 (457)
25 KOG0147 Transcriptional coacti 99.9 1.1E-21 2.5E-26 209.8 12.4 244 194-449 177-524 (549)
26 KOG0124 Polypyrimidine tract-b 99.9 5.8E-21 1.3E-25 193.0 16.3 146 196-344 113-275 (544)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 2.8E-21 6.1E-26 218.0 15.1 191 195-399 137-367 (578)
28 KOG4212 RNA-binding protein hn 99.9 1.8E-20 4E-25 193.6 19.6 143 196-343 44-278 (608)
29 KOG0109 RNA-binding protein LA 99.8 3.1E-20 6.8E-25 183.4 12.4 178 278-493 4-181 (346)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5.8E-20 1.3E-24 212.2 16.6 160 273-443 172-365 (509)
31 KOG0145 RNA-binding protein EL 99.8 4.3E-20 9.3E-25 179.2 11.8 169 274-453 39-207 (360)
32 KOG0131 Splicing factor 3b, su 99.8 9.8E-20 2.1E-24 168.8 10.6 169 275-455 8-177 (203)
33 KOG0109 RNA-binding protein LA 99.8 1.1E-19 2.4E-24 179.6 9.3 157 197-375 3-163 (346)
34 KOG0117 Heterogeneous nuclear 99.8 5.7E-19 1.2E-23 184.0 14.5 152 274-441 81-234 (506)
35 KOG0131 Splicing factor 3b, su 99.8 3.3E-19 7.1E-24 165.3 9.8 166 195-365 8-180 (203)
36 KOG4211 Splicing factor hnRNP- 99.8 9.6E-17 2.1E-21 170.1 22.7 235 196-440 10-345 (510)
37 KOG0146 RNA-binding protein ET 99.7 7.2E-18 1.6E-22 164.4 10.6 185 265-457 2-365 (371)
38 KOG0110 RNA-binding protein (R 99.7 3.9E-17 8.4E-22 179.7 12.2 157 199-361 518-692 (725)
39 PLN03134 glycine-rich RNA-bind 99.7 1.7E-16 3.8E-21 149.8 13.7 71 372-442 33-103 (144)
40 KOG0124 Polypyrimidine tract-b 99.7 1.9E-16 4.1E-21 160.5 11.5 162 277-444 114-281 (544)
41 KOG0107 Alternative splicing f 99.7 1.8E-15 4E-20 139.7 15.4 77 374-459 11-87 (195)
42 KOG4205 RNA-binding protein mu 99.7 2.3E-16 4.9E-21 164.8 9.3 199 195-401 5-215 (311)
43 KOG0147 Transcriptional coacti 99.6 2.1E-16 4.7E-21 169.7 8.3 169 274-449 177-354 (549)
44 KOG1190 Polypyrimidine tract-b 99.6 2.2E-15 4.8E-20 155.5 14.6 239 195-456 27-372 (492)
45 KOG0105 Alternative splicing f 99.6 1.5E-14 3.2E-19 134.3 14.8 164 275-454 5-189 (241)
46 KOG4205 RNA-binding protein mu 99.6 4.2E-15 9E-20 155.4 10.7 171 275-455 5-176 (311)
47 KOG1190 Polypyrimidine tract-b 99.6 5E-14 1.1E-18 145.6 17.5 236 198-455 152-489 (492)
48 KOG0120 Splicing factor U2AF, 99.6 1.1E-14 2.5E-19 159.0 13.5 236 195-443 174-482 (500)
49 KOG0105 Alternative splicing f 99.6 1.1E-14 2.5E-19 135.0 10.8 140 194-346 4-175 (241)
50 KOG4207 Predicted splicing fac 99.6 1.5E-14 3.2E-19 136.7 11.7 78 374-455 14-91 (256)
51 KOG4211 Splicing factor hnRNP- 99.6 1.2E-12 2.6E-17 139.3 27.4 165 277-453 11-180 (510)
52 KOG4206 Spliceosomal protein s 99.6 7E-14 1.5E-18 135.6 14.9 195 198-441 11-209 (221)
53 KOG1456 Heterogeneous nuclear 99.5 1.3E-13 2.9E-18 140.8 16.8 237 196-452 31-362 (494)
54 PLN03134 glycine-rich RNA-bind 99.5 1.2E-13 2.6E-18 130.5 9.6 82 195-276 33-114 (144)
55 KOG0146 RNA-binding protein ET 99.5 1.3E-13 2.8E-18 135.0 9.7 160 195-361 18-364 (371)
56 KOG1457 RNA binding protein (c 99.5 4.7E-13 1E-17 128.1 12.6 161 275-441 33-274 (284)
57 KOG0113 U1 small nuclear ribon 99.5 2.1E-12 4.5E-17 129.1 17.2 82 371-454 99-180 (335)
58 KOG1548 Transcription elongati 99.4 1.4E-12 3.1E-17 132.7 14.6 194 194-445 132-344 (382)
59 KOG1456 Heterogeneous nuclear 99.4 6.7E-12 1.5E-16 128.4 18.8 238 201-456 127-490 (494)
60 KOG0121 Nuclear cap-binding pr 99.4 3.1E-13 6.8E-18 118.4 6.6 72 371-442 34-105 (153)
61 KOG1365 RNA-binding protein Fu 99.4 2.4E-12 5.2E-17 132.0 13.9 245 193-441 57-350 (508)
62 KOG0106 Alternative splicing f 99.4 1.7E-13 3.7E-18 134.6 5.1 145 278-444 3-162 (216)
63 KOG0122 Translation initiation 99.4 6.1E-13 1.3E-17 129.5 8.4 82 372-457 188-269 (270)
64 KOG1457 RNA binding protein (c 99.4 5.6E-12 1.2E-16 120.8 12.6 145 196-347 34-274 (284)
65 PF00076 RRM_1: RNA recognitio 99.4 1.4E-12 2.9E-17 107.5 6.9 66 376-442 1-66 (70)
66 TIGR01659 sex-lethal sex-letha 99.3 3.6E-12 7.8E-17 137.7 9.2 73 372-444 106-178 (346)
67 PF00076 RRM_1: RNA recognitio 99.3 4E-12 8.7E-17 104.6 7.4 70 199-269 1-70 (70)
68 KOG0121 Nuclear cap-binding pr 99.3 3.1E-12 6.6E-17 112.2 6.5 84 190-273 30-113 (153)
69 KOG0122 Translation initiation 99.3 6.5E-12 1.4E-16 122.4 7.7 83 194-276 187-269 (270)
70 KOG0149 Predicted RNA-binding 99.3 6.5E-12 1.4E-16 122.1 7.6 77 196-273 12-88 (247)
71 KOG0149 Predicted RNA-binding 99.3 6.1E-12 1.3E-16 122.3 7.1 76 374-450 13-88 (247)
72 KOG0106 Alternative splicing f 99.3 4.7E-12 1E-16 124.5 5.2 137 198-356 3-165 (216)
73 PF14259 RRM_6: RNA recognitio 99.2 1.4E-11 3.1E-16 101.6 6.7 66 376-442 1-66 (70)
74 KOG0126 Predicted RNA-binding 99.2 2E-12 4.4E-17 120.1 0.9 80 194-273 33-112 (219)
75 COG0724 RNA-binding proteins ( 99.2 9E-11 1.9E-15 123.6 13.2 170 196-434 115-286 (306)
76 PF14259 RRM_6: RNA recognitio 99.2 3.6E-11 7.7E-16 99.2 7.9 70 199-269 1-70 (70)
77 KOG0125 Ataxin 2-binding prote 99.2 2.7E-11 5.8E-16 122.6 8.3 81 371-455 94-174 (376)
78 KOG0126 Predicted RNA-binding 99.2 2.5E-12 5.4E-17 119.6 0.3 99 336-444 8-106 (219)
79 PLN03120 nucleic acid binding 99.2 4.2E-11 9E-16 120.9 8.9 69 373-445 4-72 (260)
80 KOG4212 RNA-binding protein hn 99.2 3.2E-10 6.8E-15 118.5 15.1 160 274-441 42-282 (608)
81 KOG0130 RNA-binding protein RB 99.2 4.7E-11 1E-15 105.6 7.1 84 371-456 70-153 (170)
82 KOG0113 U1 small nuclear ribon 99.2 4.4E-11 9.6E-16 119.7 7.4 77 196-272 101-177 (335)
83 PLN03120 nucleic acid binding 99.1 1E-10 2.2E-15 118.1 8.5 76 196-275 4-79 (260)
84 KOG0107 Alternative splicing f 99.1 5.5E-11 1.2E-15 110.4 5.8 73 196-273 10-82 (195)
85 KOG4207 Predicted splicing fac 99.1 5.2E-11 1.1E-15 113.0 5.4 78 196-273 13-90 (256)
86 PLN03213 repressor of silencin 99.1 1.2E-10 2.6E-15 123.1 8.3 72 373-448 10-83 (759)
87 KOG0130 RNA-binding protein RB 99.1 6.6E-11 1.4E-15 104.7 4.8 80 194-273 70-149 (170)
88 smart00362 RRM_2 RNA recogniti 99.1 3.8E-10 8.2E-15 92.5 8.2 66 375-442 1-66 (72)
89 PLN03121 nucleic acid binding 99.1 2.5E-10 5.3E-15 113.4 8.2 68 373-444 5-72 (243)
90 KOG0114 Predicted RNA-binding 99.1 2.6E-10 5.7E-15 96.5 7.1 67 373-442 18-84 (124)
91 smart00360 RRM RNA recognition 99.1 5.5E-10 1.2E-14 91.1 8.8 65 378-442 1-65 (71)
92 KOG0111 Cyclophilin-type pepti 99.1 1E-10 2.3E-15 111.7 4.8 83 372-458 9-91 (298)
93 KOG0125 Ataxin 2-binding prote 99.1 2.2E-10 4.8E-15 116.1 7.2 77 196-274 96-172 (376)
94 PLN03213 repressor of silencin 99.1 2.2E-10 4.7E-15 121.2 7.1 77 196-276 10-88 (759)
95 smart00362 RRM_2 RNA recogniti 99.1 6.9E-10 1.5E-14 90.9 8.4 71 198-270 1-71 (72)
96 PLN03121 nucleic acid binding 99.0 4.7E-10 1E-14 111.4 8.5 77 195-275 4-80 (243)
97 KOG0128 RNA-binding protein SA 99.0 5.4E-11 1.2E-15 134.2 1.2 218 195-442 570-804 (881)
98 smart00360 RRM RNA recognition 99.0 1.2E-09 2.5E-14 89.2 7.6 70 201-270 1-70 (71)
99 KOG0111 Cyclophilin-type pepti 99.0 3.7E-10 8.1E-15 108.0 4.7 83 194-276 8-90 (298)
100 KOG0114 Predicted RNA-binding 99.0 1.8E-09 3.9E-14 91.5 7.3 75 196-273 18-92 (124)
101 cd00590 RRM RRM (RNA recogniti 98.9 4.8E-09 1E-13 86.3 8.5 67 375-442 1-67 (74)
102 KOG0116 RasGAP SH3 binding pro 98.9 4.9E-09 1.1E-13 114.1 10.7 67 374-441 289-355 (419)
103 smart00361 RRM_1 RNA recogniti 98.9 3.6E-09 7.8E-14 87.2 7.4 57 387-443 2-65 (70)
104 cd00590 RRM RRM (RNA recogniti 98.9 5.6E-09 1.2E-13 85.9 8.4 73 198-271 1-73 (74)
105 COG0724 RNA-binding proteins ( 98.9 3.4E-09 7.4E-14 111.5 8.6 72 373-444 115-186 (306)
106 KOG0129 Predicted RNA-binding 98.9 1.9E-08 4E-13 108.6 13.3 164 276-440 259-442 (520)
107 KOG4661 Hsp27-ERE-TATA-binding 98.9 7E-09 1.5E-13 111.5 9.5 82 194-275 403-484 (940)
108 KOG0108 mRNA cleavage and poly 98.8 4.2E-09 9E-14 115.4 7.3 69 374-442 19-87 (435)
109 KOG0415 Predicted peptidyl pro 98.8 1.8E-09 4E-14 110.1 3.8 83 193-275 236-318 (479)
110 KOG0108 mRNA cleavage and poly 98.8 4.6E-09 9.9E-14 115.1 7.1 79 197-275 19-97 (435)
111 KOG4208 Nucleolar RNA-binding 98.8 6.1E-09 1.3E-13 99.8 7.0 76 374-449 50-126 (214)
112 KOG0120 Splicing factor U2AF, 98.8 7.5E-09 1.6E-13 113.9 8.7 159 196-359 289-489 (500)
113 KOG0415 Predicted peptidyl pro 98.8 3E-09 6.4E-14 108.6 4.5 75 370-444 236-310 (479)
114 smart00361 RRM_1 RNA recogniti 98.8 1.8E-08 4E-13 83.0 6.8 61 210-270 2-69 (70)
115 PF13893 RRM_5: RNA recognitio 98.8 3.3E-08 7.2E-13 77.5 7.8 48 390-442 1-48 (56)
116 KOG4210 Nuclear localization s 98.7 1.3E-08 2.8E-13 106.8 6.3 177 195-456 87-263 (285)
117 KOG4660 Protein Mei2, essentia 98.7 9.9E-08 2.1E-12 104.0 12.7 73 193-270 72-144 (549)
118 KOG1365 RNA-binding protein Fu 98.7 3.2E-08 6.9E-13 102.2 7.9 145 196-344 161-347 (508)
119 PF13893 RRM_5: RNA recognitio 98.7 3E-08 6.4E-13 77.8 5.5 56 213-273 1-56 (56)
120 KOG4454 RNA binding protein (R 98.7 8.9E-09 1.9E-13 98.9 2.1 136 195-343 8-147 (267)
121 KOG4661 Hsp27-ERE-TATA-binding 98.7 8.9E-08 1.9E-12 103.2 9.8 70 373-442 405-474 (940)
122 KOG4307 RNA binding protein RB 98.6 9.2E-08 2E-12 105.6 9.5 158 281-449 316-508 (944)
123 KOG4676 Splicing factor, argin 98.6 1.4E-08 3E-13 105.2 2.4 203 198-441 9-214 (479)
124 KOG0132 RNA polymerase II C-te 98.6 5.5E-08 1.2E-12 109.0 5.7 104 189-298 414-528 (894)
125 KOG0112 Large RNA-binding prot 98.6 7E-08 1.5E-12 109.9 5.9 160 275-456 371-530 (975)
126 KOG4208 Nucleolar RNA-binding 98.5 1.1E-07 2.3E-12 91.4 6.0 78 196-273 49-127 (214)
127 KOG4307 RNA binding protein RB 98.5 5.9E-07 1.3E-11 99.4 10.4 69 374-442 868-936 (944)
128 KOG0129 Predicted RNA-binding 98.5 9.8E-07 2.1E-11 95.6 11.8 144 194-340 257-432 (520)
129 KOG0128 RNA-binding protein SA 98.4 1.5E-08 3.2E-13 114.9 -2.9 135 195-344 666-800 (881)
130 KOG0112 Large RNA-binding prot 98.4 1.6E-07 3.5E-12 107.1 4.9 162 192-364 368-533 (975)
131 KOG0226 RNA-binding proteins [ 98.4 3.8E-07 8.1E-12 90.0 6.3 158 278-442 98-259 (290)
132 KOG0132 RNA polymerase II C-te 98.4 3.5E-07 7.5E-12 102.7 6.8 65 372-442 420-484 (894)
133 KOG0153 Predicted RNA-binding 98.4 5.1E-07 1.1E-11 92.9 6.2 77 193-275 225-302 (377)
134 KOG0153 Predicted RNA-binding 98.3 9.1E-07 2E-11 91.1 7.5 74 373-456 228-302 (377)
135 KOG4454 RNA binding protein (R 98.3 2.5E-07 5.3E-12 89.2 2.8 140 274-440 7-150 (267)
136 KOG4206 Spliceosomal protein s 98.3 1.1E-06 2.4E-11 86.0 7.1 75 374-455 10-88 (221)
137 KOG4209 Splicing factor RNPS1, 98.3 2.9E-06 6.3E-11 86.2 9.6 77 371-448 99-175 (231)
138 PF04059 RRM_2: RNA recognitio 98.2 4.4E-06 9.6E-11 72.5 8.3 82 374-455 2-85 (97)
139 KOG0533 RRM motif-containing p 98.2 7.4E-06 1.6E-10 83.0 11.1 75 374-449 84-158 (243)
140 KOG1995 Conserved Zn-finger pr 98.2 3.5E-06 7.5E-11 87.8 7.2 82 372-455 65-154 (351)
141 KOG4849 mRNA cleavage factor I 98.1 2.5E-05 5.4E-10 80.2 12.3 72 374-445 81-154 (498)
142 KOG4209 Splicing factor RNPS1, 98.1 5.4E-06 1.2E-10 84.3 5.7 82 191-273 96-177 (231)
143 KOG0533 RRM motif-containing p 98.0 9.5E-06 2.1E-10 82.2 6.8 79 194-273 81-159 (243)
144 PF04059 RRM_2: RNA recognitio 98.0 2.5E-05 5.4E-10 67.8 7.4 68 197-264 2-71 (97)
145 KOG4660 Protein Mei2, essentia 98.0 3.8E-06 8.1E-11 91.9 2.9 70 372-446 74-143 (549)
146 KOG0226 RNA-binding proteins [ 97.9 8.8E-06 1.9E-10 80.5 4.7 152 198-356 98-264 (290)
147 KOG0116 RasGAP SH3 binding pro 97.9 1.2E-05 2.6E-10 88.0 5.5 75 196-271 288-362 (419)
148 KOG3152 TBP-binding protein, a 97.9 1.1E-05 2.4E-10 80.0 4.2 74 195-268 73-158 (278)
149 KOG2193 IGF-II mRNA-binding pr 97.9 6.9E-06 1.5E-10 86.3 2.6 147 277-444 2-148 (584)
150 KOG1995 Conserved Zn-finger pr 97.8 2E-05 4.4E-10 82.2 4.7 84 194-277 64-155 (351)
151 KOG0151 Predicted splicing reg 97.8 2.9E-05 6.2E-10 86.8 5.9 82 370-455 171-255 (877)
152 PF11608 Limkain-b1: Limkain b 97.8 7.6E-05 1.7E-09 61.6 6.7 70 197-276 3-77 (90)
153 KOG1548 Transcription elongati 97.7 7.1E-05 1.5E-09 77.4 7.6 77 374-455 135-219 (382)
154 PF08777 RRM_3: RNA binding mo 97.7 4.1E-05 8.8E-10 68.1 5.0 59 374-438 2-60 (105)
155 KOG0151 Predicted splicing reg 97.6 0.00011 2.3E-09 82.4 6.7 79 195-273 173-254 (877)
156 PF11608 Limkain-b1: Limkain b 97.6 0.00021 4.6E-09 59.0 6.7 61 374-444 3-68 (90)
157 KOG1855 Predicted RNA-binding 97.5 0.002 4.2E-08 68.8 14.8 69 371-439 229-310 (484)
158 KOG2314 Translation initiation 97.3 0.00056 1.2E-08 74.9 7.2 68 374-442 59-132 (698)
159 KOG2193 IGF-II mRNA-binding pr 97.3 6.8E-05 1.5E-09 79.0 0.1 146 198-358 3-153 (584)
160 KOG4849 mRNA cleavage factor I 97.1 0.00036 7.9E-09 71.9 4.0 80 193-272 77-158 (498)
161 PF08777 RRM_3: RNA binding mo 97.0 0.00093 2E-08 59.5 4.7 59 197-261 2-60 (105)
162 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.001 2.2E-08 51.2 4.3 52 374-432 2-53 (53)
163 KOG3152 TBP-binding protein, a 96.9 0.00047 1E-08 68.7 2.5 71 374-444 75-157 (278)
164 COG5175 MOT2 Transcriptional r 96.8 0.0018 3.8E-08 66.7 5.2 77 197-273 115-200 (480)
165 KOG2416 Acinus (induces apopto 96.7 0.0058 1.3E-07 67.7 8.5 75 193-273 441-519 (718)
166 KOG4210 Nuclear localization s 96.6 0.0013 2.8E-08 69.3 3.3 78 196-274 184-262 (285)
167 KOG1999 RNA polymerase II tran 96.6 0.0049 1.1E-07 72.2 7.5 30 235-264 207-236 (1024)
168 KOG2314 Translation initiation 96.5 0.0042 9.1E-08 68.3 6.1 75 195-270 57-138 (698)
169 KOG0115 RNA-binding protein p5 96.5 0.0053 1.2E-07 61.5 6.3 95 332-442 5-99 (275)
170 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.008 1.7E-07 46.3 5.3 52 197-255 2-53 (53)
171 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.011 2.4E-07 51.8 6.4 68 374-443 7-81 (100)
172 COG5175 MOT2 Transcriptional r 96.3 0.0061 1.3E-07 62.9 5.3 75 374-448 115-198 (480)
173 KOG0921 Dosage compensation co 96.1 0.025 5.4E-07 66.0 9.8 21 236-256 468-488 (1282)
174 KOG4676 Splicing factor, argin 96.0 0.0053 1.2E-07 64.7 3.7 68 374-442 8-78 (479)
175 KOG0115 RNA-binding protein p5 95.7 0.013 2.8E-07 58.8 4.7 92 250-346 6-97 (275)
176 KOG1855 Predicted RNA-binding 95.6 0.011 2.4E-07 63.2 4.0 66 195-260 230-308 (484)
177 KOG1996 mRNA splicing factor [ 95.6 0.029 6.2E-07 57.1 6.5 57 387-443 300-357 (378)
178 KOG2416 Acinus (induces apopto 95.1 0.013 2.7E-07 65.1 2.6 70 372-447 443-513 (718)
179 PF05172 Nup35_RRM: Nup53/35/4 95.1 0.074 1.6E-06 46.7 6.9 71 196-268 6-83 (100)
180 PF08952 DUF1866: Domain of un 95.0 0.064 1.4E-06 50.0 6.4 46 388-442 51-96 (146)
181 KOG2318 Uncharacterized conser 94.9 0.31 6.6E-06 54.5 12.5 116 195-347 173-294 (650)
182 KOG2202 U2 snRNP splicing fact 94.9 0.016 3.4E-07 58.4 2.3 61 388-449 83-144 (260)
183 PF08675 RNA_bind: RNA binding 94.3 0.1 2.2E-06 43.5 5.3 54 375-437 11-64 (87)
184 KOG1996 mRNA splicing factor [ 94.2 0.09 1.9E-06 53.7 6.0 63 210-272 300-363 (378)
185 KOG2202 U2 snRNP splicing fact 93.8 0.021 4.6E-07 57.4 0.6 62 211-273 83-145 (260)
186 KOG2591 c-Mpl binding protein, 93.5 0.15 3.3E-06 56.4 6.5 87 248-342 147-233 (684)
187 PF10309 DUF2414: Protein of u 93.0 0.3 6.6E-06 38.6 5.7 54 374-435 6-62 (62)
188 PF08952 DUF1866: Domain of un 92.5 0.19 4.2E-06 46.8 4.8 70 195-273 26-104 (146)
189 PF04147 Nop14: Nop14-like fam 92.0 0.2 4.3E-06 61.3 5.4 14 208-221 426-439 (840)
190 PF10309 DUF2414: Protein of u 91.5 0.66 1.4E-05 36.8 6.1 53 198-258 7-62 (62)
191 KOG2135 Proteins containing th 91.4 0.12 2.5E-06 56.4 2.3 64 374-444 373-437 (526)
192 PF07576 BRAP2: BRCA1-associat 91.3 0.89 1.9E-05 40.7 7.4 67 374-442 14-81 (110)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 91.2 0.3 6.4E-06 47.9 4.8 73 195-267 6-84 (176)
194 KOG2591 c-Mpl binding protein, 90.9 0.37 8E-06 53.5 5.6 72 193-271 172-247 (684)
195 KOG0921 Dosage compensation co 90.7 1 2.3E-05 53.2 9.1 31 735-772 1245-1275(1282)
196 PRK11634 ATP-dependent RNA hel 89.7 3.2 6.9E-05 49.3 12.5 53 384-445 498-555 (629)
197 KOG1924 RhoA GTPase effector D 89.3 1.1 2.3E-05 52.1 7.6 14 246-259 207-220 (1102)
198 PF08675 RNA_bind: RNA binding 89.1 1.2 2.7E-05 37.2 5.9 53 199-259 11-63 (87)
199 KOG2253 U1 snRNP complex, subu 88.6 0.25 5.4E-06 56.2 2.2 70 194-272 38-107 (668)
200 KOG4285 Mitotic phosphoprotein 88.2 0.87 1.9E-05 47.1 5.5 61 374-442 198-258 (350)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 88.2 0.53 1.1E-05 46.1 3.9 70 374-443 8-83 (176)
202 PF10567 Nab6_mRNP_bdg: RNA-re 87.8 16 0.00034 38.1 14.1 61 196-256 15-82 (309)
203 KOG2253 U1 snRNP complex, subu 87.7 0.38 8.2E-06 54.8 2.9 70 371-449 38-107 (668)
204 KOG2135 Proteins containing th 87.2 0.26 5.7E-06 53.7 1.2 76 195-277 371-447 (526)
205 KOG2068 MOT2 transcription fac 87.1 0.44 9.5E-06 50.2 2.7 76 198-273 79-160 (327)
206 PHA03169 hypothetical protein; 86.6 23 0.0005 38.0 14.9 33 306-338 350-383 (413)
207 KOG4574 RNA-binding protein (c 86.1 0.53 1.2E-05 54.9 2.9 74 375-456 300-373 (1007)
208 KOG1999 RNA polymerase II tran 85.9 8.1 0.00018 46.5 12.3 17 380-396 446-462 (1024)
209 COG5271 MDN1 AAA ATPase contai 85.8 1.3 2.8E-05 55.9 6.0 22 416-437 4409-4430(4600)
210 KOG0804 Cytoplasmic Zn-finger 85.6 1.3 2.9E-05 48.2 5.4 68 373-442 74-142 (493)
211 KOG2318 Uncharacterized conser 84.9 2.5 5.4E-05 47.6 7.2 80 372-451 173-304 (650)
212 PTZ00473 Plasmodium Vir superf 84.6 3.3 7.1E-05 44.8 7.7 63 693-768 349-411 (420)
213 PF15023 DUF4523: Protein of u 83.8 3.2 7E-05 38.4 6.2 60 374-440 87-150 (166)
214 PF04847 Calcipressin: Calcipr 83.7 2.3 4.9E-05 41.9 5.8 51 386-442 8-60 (184)
215 PF07576 BRAP2: BRCA1-associat 82.5 6.7 0.00015 35.2 7.8 65 199-265 16-81 (110)
216 PTZ00473 Plasmodium Vir superf 81.4 2.9 6.3E-05 45.2 5.8 20 387-406 201-220 (420)
217 PF05285 SDA1: SDA1; InterPro 81.2 1.2 2.6E-05 48.2 3.0 9 208-216 190-198 (324)
218 KOG4483 Uncharacterized conser 80.5 1.7 3.8E-05 46.5 3.8 55 196-257 391-446 (528)
219 COG5271 MDN1 AAA ATPase contai 80.4 1.5 3.3E-05 55.4 3.7 21 322-342 4409-4429(4600)
220 PF04847 Calcipressin: Calcipr 78.2 3.1 6.7E-05 41.0 4.6 59 209-273 8-68 (184)
221 KOG2068 MOT2 transcription fac 78.1 1.5 3.3E-05 46.3 2.5 71 374-444 78-154 (327)
222 PF07292 NID: Nmi/IFP 35 domai 77.0 1.2 2.6E-05 38.0 1.1 57 241-297 1-73 (88)
223 KOG4285 Mitotic phosphoprotein 73.9 4.8 0.0001 41.8 4.7 70 197-274 198-268 (350)
224 PF11767 SET_assoc: Histone ly 73.5 14 0.0003 29.9 6.3 49 384-441 11-59 (66)
225 PF03880 DbpA: DbpA RNA bindin 71.9 9.8 0.00021 31.4 5.4 59 206-273 11-74 (74)
226 KOG0262 RNA polymerase I, larg 70.7 10 0.00022 46.8 7.0 17 202-218 1447-1463(1640)
227 KOG0804 Cytoplasmic Zn-finger 70.0 8.8 0.00019 42.2 5.8 68 196-265 74-142 (493)
228 PF15023 DUF4523: Protein of u 70.0 7.7 0.00017 36.0 4.6 58 196-260 86-147 (166)
229 KOG4410 5-formyltetrahydrofola 67.8 9.4 0.0002 39.2 5.2 57 374-436 331-395 (396)
230 KOG2141 Protein involved in hi 65.9 4.9 0.00011 46.6 3.1 23 418-440 624-646 (822)
231 PF03880 DbpA: DbpA RNA bindin 65.8 26 0.00056 28.8 6.7 55 384-447 12-71 (74)
232 KOG2773 Apoptosis antagonizing 63.7 3 6.5E-05 45.8 0.9 8 199-206 209-216 (483)
233 PRK10590 ATP-dependent RNA hel 63.2 1.7E+02 0.0037 33.3 15.2 10 431-440 359-368 (456)
234 PF11767 SET_assoc: Histone ly 62.1 21 0.00045 28.8 5.2 54 207-269 11-64 (66)
235 KOG4574 RNA-binding protein (c 60.8 6.8 0.00015 46.2 3.0 77 277-363 299-375 (1007)
236 KOG2141 Protein involved in hi 60.8 4.5 9.8E-05 46.9 1.7 14 380-393 551-564 (822)
237 KOG2295 C2H2 Zn-finger protein 60.6 3.3 7.1E-05 46.4 0.5 72 371-442 229-300 (648)
238 PHA03169 hypothetical protein; 60.6 43 0.00093 36.1 8.6 9 292-300 302-310 (413)
239 PF07292 NID: Nmi/IFP 35 domai 59.8 7.3 0.00016 33.3 2.3 70 324-395 1-74 (88)
240 KOG0262 RNA polymerase I, larg 58.6 8.6 0.00019 47.3 3.5 8 417-424 1586-1593(1640)
241 PF14111 DUF4283: Domain of un 58.6 12 0.00025 35.4 3.9 83 321-407 55-139 (153)
242 COG4547 CobT Cobalamin biosynt 57.6 17 0.00036 40.2 5.1 13 385-397 561-573 (620)
243 PF03286 Pox_Ag35: Pox virus A 56.4 19 0.00041 35.8 4.9 14 3-16 49-62 (200)
244 COG1512 Beta-propeller domains 53.4 13 0.00027 39.0 3.4 14 762-775 258-271 (271)
245 KOG2773 Apoptosis antagonizing 53.2 9.3 0.0002 42.1 2.4 6 390-395 403-408 (483)
246 PF02724 CDC45: CDC45-like pro 48.6 11 0.00024 44.6 2.3 10 293-302 372-381 (622)
247 PF08081 RBM1CTR: RBM1CTR (NUC 48.1 38 0.00083 24.7 4.0 12 541-552 23-34 (45)
248 PF02724 CDC45: CDC45-like pro 47.7 9.6 0.00021 45.1 1.6 9 416-424 499-507 (622)
249 COG4371 Predicted membrane pro 47.5 30 0.00064 35.2 4.7 9 689-697 48-56 (334)
250 KOG2295 C2H2 Zn-finger protein 43.3 6.6 0.00014 44.1 -0.6 71 194-264 229-299 (648)
251 PF07530 PRE_C2HC: Associated 43.0 30 0.00065 28.1 3.3 63 211-276 2-65 (68)
252 COG5638 Uncharacterized conser 42.6 49 0.0011 35.9 5.6 79 371-449 144-292 (622)
253 COG5593 Nucleic-acid-binding p 41.8 32 0.00069 38.8 4.2 20 198-217 800-819 (821)
254 COG4547 CobT Cobalamin biosynt 41.0 27 0.00059 38.6 3.5 8 263-270 426-433 (620)
255 smart00596 PRE_C2HC PRE_C2HC d 39.9 30 0.00065 28.0 2.8 62 211-275 2-64 (69)
256 PF02714 DUF221: Domain of unk 39.3 37 0.00081 36.6 4.5 56 241-298 1-56 (325)
257 KOG4019 Calcineurin-mediated s 36.1 17 0.00036 35.2 1.0 73 198-276 12-90 (193)
258 PF10567 Nab6_mRNP_bdg: RNA-re 35.0 97 0.0021 32.5 6.3 60 373-432 15-81 (309)
259 KOG2891 Surface glycoprotein [ 33.7 1.5E+02 0.0034 30.5 7.3 67 374-440 150-247 (445)
260 TIGR00927 2A1904 K+-dependent 33.4 58 0.0013 39.9 4.9 7 199-205 907-913 (1096)
261 KOG2393 Transcription initiati 32.4 43 0.00092 38.0 3.5 21 199-219 476-496 (555)
262 PF14111 DUF4283: Domain of un 32.0 92 0.002 29.2 5.4 70 238-310 55-137 (153)
263 PF11823 DUF3343: Protein of u 31.8 1.4E+02 0.0031 24.3 5.8 58 240-301 3-63 (73)
264 KOG4483 Uncharacterized conser 31.6 61 0.0013 35.3 4.3 53 374-433 392-445 (528)
265 KOG4365 Uncharacterized conser 30.8 13 0.00028 40.6 -0.7 75 198-273 5-79 (572)
266 KOG4410 5-formyltetrahydrofola 30.4 90 0.002 32.4 5.1 55 198-258 332-394 (396)
267 COG5638 Uncharacterized conser 30.0 1.6E+02 0.0035 32.2 7.0 34 197-230 147-185 (622)
268 PRK05901 RNA polymerase sigma 29.8 48 0.001 38.1 3.5 12 320-331 319-330 (509)
269 KOG1295 Nonsense-mediated deca 29.2 58 0.0013 35.4 3.7 69 196-264 7-78 (376)
270 KOG4213 RNA-binding protein La 29.1 66 0.0014 31.2 3.6 58 196-257 111-169 (205)
271 KOG4213 RNA-binding protein La 28.6 99 0.0021 30.0 4.7 57 374-434 112-169 (205)
272 PF03468 XS: XS domain; Inter 28.2 51 0.0011 29.9 2.7 50 198-250 10-68 (116)
273 KOG4264 Nucleo-cytoplasmic pro 28.1 47 0.001 37.4 2.8 10 563-572 434-443 (694)
274 PF04094 DUF390: Protein of un 27.9 1.1E+03 0.024 28.2 14.7 17 381-397 7-23 (828)
275 PF06403 Lamprin: Lamprin; In 27.5 58 0.0013 28.1 2.7 23 713-735 60-82 (138)
276 PF03468 XS: XS domain; Inter 27.2 67 0.0014 29.1 3.3 45 386-433 30-75 (116)
277 KOG4008 rRNA processing protei 26.8 30 0.00064 35.0 1.0 32 373-404 40-71 (261)
278 COG4371 Predicted membrane pro 26.6 94 0.002 31.7 4.4 6 715-720 50-55 (334)
279 TIGR00927 2A1904 K+-dependent 25.5 74 0.0016 39.0 4.0 7 240-246 933-939 (1096)
280 COG5193 LHP1 La protein, small 25.2 41 0.00089 36.7 1.7 59 374-432 175-243 (438)
281 PF00403 HMA: Heavy-metal-asso 25.0 2.6E+02 0.0056 21.5 6.0 54 375-434 1-58 (62)
282 TIGR01651 CobT cobaltochelatas 24.0 66 0.0014 37.3 3.2 9 197-205 296-304 (600)
283 PF15513 DUF4651: Domain of un 23.9 1.4E+02 0.0031 23.7 4.1 19 388-406 9-27 (62)
284 KOG2266 Chromatin-associated p 22.1 40 0.00087 37.5 1.0 12 233-244 241-252 (594)
285 KOG4019 Calcineurin-mediated s 21.9 58 0.0013 31.7 1.9 65 374-444 11-80 (193)
286 TIGR01651 CobT cobaltochelatas 21.6 69 0.0015 37.2 2.8 10 387-396 542-551 (600)
287 KOG1980 Uncharacterized conser 21.6 70 0.0015 37.1 2.8 10 278-287 528-537 (754)
288 KOG3118 Disrupter of silencing 21.3 19 0.0004 40.1 -1.7 26 196-221 190-215 (517)
289 KOG0650 WD40 repeat nucleolar 21.0 1.6E+02 0.0035 34.1 5.3 9 211-219 153-161 (733)
290 KOG0468 U5 snRNP-specific prot 20.6 1.1E+02 0.0023 36.0 3.9 40 196-235 100-140 (971)
291 KOG1295 Nonsense-mediated deca 20.4 72 0.0016 34.7 2.4 69 374-442 8-79 (376)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-40 Score=341.29 Aligned_cols=250 Identities=33% Similarity=0.581 Sum_probs=231.6
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCcee-cCccccccC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l-~gr~i~V~~ 272 (776)
...+.|||+.||.++.+++|.-||.+.|+|.+++||+++.+|.++|||||+|.+++.|++|++.||+.+| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5678899999999999999999999999999999999999999999999999999999999999999987 699999999
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCC
Q 004060 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (776)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (776)
+..+++|||+|||+++++++|++.|++.+. .|+.|.|.....+..+++|||||+|.++..|..|-..|-...|.+- +.
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw-gn 238 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW-GN 238 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec-CC
Confidence 999999999999999999999999999875 6889999988888999999999999999999999887776666543 88
Q ss_pred CceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHH
Q 004060 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 353 ~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
.+.|.|+++........+.+.+.|||+||+.+||++.|+.+|++||.|..|+.++| ||||.|.+.++|.+||
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAM 310 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999866 9999999999999999
Q ss_pred HHhCCCccCCCcceEEEEEeccCCC
Q 004060 433 KSINNAELGEGDNKAKVRARLSRPL 457 (776)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (776)
+.|||++|+|.. |.+.+++|.
T Consensus 311 ~~~ngkeldG~~----iEvtLAKP~ 331 (506)
T KOG0117|consen 311 KETNGKELDGSP----IEVTLAKPV 331 (506)
T ss_pred HHhcCceecCce----EEEEecCCh
Confidence 999999999844 344444543
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.4e-38 Score=353.46 Aligned_cols=248 Identities=29% Similarity=0.532 Sum_probs=217.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceec-CccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~-gr~i~V~~a 273 (776)
..++|||+|||+++++++|+++|.+||.|..|+|+++ .+++++|||||+|.+.++|++||+.||+..|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4588999999999999999999999999999999999 78999999999999999999999999998885 899999999
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
...++|||+|||+++++++|.++|.+++. .+..+.++......+++++||||+|.+.++|..|++.|+...+.+ .++.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l-~Gr~ 213 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHV 213 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe-cCce
Confidence 99999999999999999999999999864 244444444434566889999999999999999999887655433 3788
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 431 (776)
|.|.|+..........+...++|||+||++.+++++|+++|++| |.|+.|.++ ++||||+|.+.++|++|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 99999987766666666677899999999999999999999999 999999887 45999999999999999
Q ss_pred HHHhCCCccCCCcceEEEEEeccCCC
Q 004060 432 AKSINNAELGEGDNKAKVRARLSRPL 457 (776)
Q Consensus 432 ~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (776)
|+.||+..|.+ ..|.+.+++|.
T Consensus 286 i~~lnG~~i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 286 MDELNGKELEG----SEIEVTLAKPV 307 (578)
T ss_pred HHHhCCCEECC----EEEEEEEccCC
Confidence 99999999987 45555666654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.7e-38 Score=347.46 Aligned_cols=243 Identities=23% Similarity=0.449 Sum_probs=213.1
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC-
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~- 274 (776)
.++|||+|||..+++++|+++|..||+|..|+|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -----CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecC
Q 004060 275 -----DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (776)
Q Consensus 275 -----~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~ 349 (776)
...+|||+|||..+++++|..+|..+| .+..+.++.+. .++.+++||||+|.+.++|..|++.|++..+. +
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-g 158 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFG--QIITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-G 158 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccC--CEEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-C
Confidence 346899999999999999999999999 78888888763 46788999999999999999999999987653 2
Q ss_pred CCCCceecccCCCCCCch--------------------------------------------------------------
Q 004060 350 VDRPAKVSFADSFIDPGD-------------------------------------------------------------- 367 (776)
Q Consensus 350 ~~~~~~v~~a~~~~~~~~-------------------------------------------------------------- 367 (776)
...++.+.|+........
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 345666666543220000
Q ss_pred -----------h--------------hhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEe
Q 004060 368 -----------E--------------IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422 (776)
Q Consensus 368 -----------~--------------~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F 422 (776)
. ......+|||+|||..+++++|+++|++||.|..|+|+++..|+.++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 0 001123699999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhCCCccCC
Q 004060 423 DTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 423 ~~~~~A~~A~~~l~g~~~~g 442 (776)
.+.++|.+||..|||..|.|
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CCHHHHHHHHHHhCCCEECC
Confidence 99999999999999999987
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=277.20 Aligned_cols=246 Identities=25% Similarity=0.447 Sum_probs=219.6
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..+.|.|.-||..+|+++|+.+|...|+|..|++++|+.+|++.||+||.|-.+++|++|+..||+..|..+.|+|..+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CC------CcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceec
Q 004060 275 DS------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348 (776)
Q Consensus 275 ~~------~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~ 348 (776)
++ ..|||.+||+++|..+|.++|.+|| .|..-+|+.+ ..++.++|.+||.|....+|+.|++.||+..- .
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fG--rIItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P-~ 195 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFG--RIITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP-S 195 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhh--hhhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCC-C
Confidence 65 5899999999999999999999999 6777777766 46799999999999999999999999998755 3
Q ss_pred CCCCCceecccCCCCCCch----------------------------------------------------------hhh
Q 004060 349 GVDRPAKVSFADSFIDPGD----------------------------------------------------------EIM 370 (776)
Q Consensus 349 ~~~~~~~v~~a~~~~~~~~----------------------------------------------------------~~~ 370 (776)
+...+|.|.|+..+.+... ...
T Consensus 196 g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~ 275 (360)
T KOG0145|consen 196 GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGP 275 (360)
T ss_pred CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCC
Confidence 4567888888865542200 000
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
...+||||-||..++++.-|+++|.+||.|.+|+|++|..|.+.|||+||++.+-++|..||..|||..+.++.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 12379999999999999999999999999999999999999999999999999999999999999999998633
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.6e-34 Score=330.62 Aligned_cols=236 Identities=25% Similarity=0.477 Sum_probs=211.1
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC---
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ--- 274 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~--- 274 (776)
+|||+|||.++|+++|.++|++||.|+.|+|+++..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred -----CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecC
Q 004060 275 -----DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (776)
Q Consensus 275 -----~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~ 349 (776)
...+|||+||+.++++++|+++|+.|| .|..|.|+.+ .+++++|||||+|.+.++|.+|+..|++..+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G--~i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~~~--- 154 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFG--NILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL--- 154 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcC--CcceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhcccEe---
Confidence 235799999999999999999999999 7888988876 4677899999999999999999999998766
Q ss_pred CCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHH
Q 004060 350 VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (776)
Q Consensus 350 ~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (776)
.++.+.+.................++|||+||+.++|+++|+++|..||.|..|.|+.+. +++++|||||+|.+.++|.
T Consensus 155 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~ 233 (562)
T TIGR01628 155 NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAA 233 (562)
T ss_pred cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHH
Confidence 367777765443332222223345789999999999999999999999999999999884 7889999999999999999
Q ss_pred HHHHHhCCCccC
Q 004060 430 TCAKSINNAELG 441 (776)
Q Consensus 430 ~A~~~l~g~~~~ 441 (776)
+|++.|||..|.
T Consensus 234 ~Av~~l~g~~i~ 245 (562)
T TIGR01628 234 KAVEEMNGKKIG 245 (562)
T ss_pred HHHHHhCCcEec
Confidence 999999999997
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.1e-32 Score=316.06 Aligned_cols=243 Identities=23% Similarity=0.435 Sum_probs=210.9
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC--
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a-- 273 (776)
..+|||+|||.++++++|+++|+.||.|+.|+|+.+. +++++|||||+|.+.++|.+|+..||+..+.++.|.|...
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4579999999999999999999999999999999874 6789999999999999999999999999999999988543
Q ss_pred ---------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCC
Q 004060 274 ---------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (776)
Q Consensus 274 ---------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~ 344 (776)
...++|||+||+.++|+++|+++|..|| .|..+.++.+ ..+.++|||||.|.+.++|.+|++.|++.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--~i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG--EITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcC--CEEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 2346799999999999999999999999 7889998877 46788999999999999999999999988
Q ss_pred ceec-CCCCCceecccCCCCCCch-------------hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCC
Q 004060 345 DVLF-GVDRPAKVSFADSFIDPGD-------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP 410 (776)
Q Consensus 345 ~i~~-~~~~~~~v~~a~~~~~~~~-------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~ 410 (776)
.+.. ..++.+.|.++........ ......++|||+||+..+|+++|+++|++||.|+.|+|+.+ .
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~ 321 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-E 321 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-C
Confidence 7731 1256677766644332210 11224568999999999999999999999999999999999 6
Q ss_pred CCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 411 SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 411 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
++.++|||||+|.+.++|.+|+..|||..|.|..
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce
Confidence 8999999999999999999999999999998743
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=4.6e-31 Score=300.23 Aligned_cols=239 Identities=25% Similarity=0.427 Sum_probs=202.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
....+|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+||. |++..|.|+.|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 456789999999999999999999999999999999999999999999999999999999997 8999999999988654
Q ss_pred C------------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHH
Q 004060 274 Q------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335 (776)
Q Consensus 274 ~------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~ 335 (776)
. ..++|||+||+..+++++|+++|..|| .|..|.|+.+. .++.++|||||+|.+.++|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLHRDP-ETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcC-CCCccceEEEEEECCHHHHH
Confidence 1 236899999999999999999999999 78899988773 56788999999999999999
Q ss_pred HHHHHHcCCceecCCCCCceecccCCCCCC-----------------------------------c--------------
Q 004060 336 DAFKRLQKRDVLFGVDRPAKVSFADSFIDP-----------------------------------G-------------- 366 (776)
Q Consensus 336 ~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~-----------------------------------~-------------- 366 (776)
+|+..|++..+ .+++|.|.|+...... .
T Consensus 243 ~A~~~l~g~~i---~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
T TIGR01622 243 EALEVMNGFEL---AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKI 319 (457)
T ss_pred HHHHhcCCcEE---CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchh
Confidence 99999999666 3788888884321000 0
Q ss_pred ------------------------------------hhhhhhhhccccCCCCCCCh----------HHHHHHHHhhcCCe
Q 004060 367 ------------------------------------DEIMAQVKTVFVDGLPASWD----------EDRVRELLKNYGEI 400 (776)
Q Consensus 367 ------------------------------------~~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~v 400 (776)
......+++|+|.||....+ .++|++.|.+||.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v 399 (457)
T TIGR01622 320 ALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGV 399 (457)
T ss_pred hhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCe
Confidence 00112446788888854433 36899999999999
Q ss_pred eEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 401 ~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.|.|... ...|++||+|.++++|.+|++.|||+.|.|.
T Consensus 400 ~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr 438 (457)
T TIGR01622 400 VHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGK 438 (457)
T ss_pred eEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCe
Confidence 99998743 4579999999999999999999999999873
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=2.2e-31 Score=281.16 Aligned_cols=233 Identities=27% Similarity=0.459 Sum_probs=206.6
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC-
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~- 274 (776)
..||||++||+.++.++|.++|+.+|+|..|.+++++.++.++||+||+|.-.++++.|++.+++..|.|+.|.|.++.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998761
Q ss_pred -------------------------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceE
Q 004060 275 -------------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323 (776)
Q Consensus 275 -------------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~ 323 (776)
+.-.|+|.||||.|.+.+|+.+|+.|| .|.+|.|.+. ..++..||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G--~V~Ei~IP~k--~dgklcGF 160 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG--KVVEIVIPRK--KDGKLCGF 160 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc--eEEEEEcccC--CCCCccce
Confidence 134799999999999999999999999 8999999843 55666699
Q ss_pred EEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCC------------------------C--------------
Q 004060 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID------------------------P-------------- 365 (776)
Q Consensus 324 afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~------------------------~-------------- 365 (776)
|||+|....+|..|++.+|+..|. ++++-|.|+-.... .
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~---gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~ 237 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKID---GRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEE 237 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceec---CceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccc
Confidence 999999999999999999999884 99999999632210 0
Q ss_pred -----c--h---------------------h-------------------hhhhhhccccCCCCCCChHHHHHHHHhhcC
Q 004060 366 -----G--D---------------------E-------------------IMAQVKTVFVDGLPASWDEDRVRELLKNYG 398 (776)
Q Consensus 366 -----~--~---------------------~-------------------~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 398 (776)
. + . ...-..+|||.|||+++|++.|.++|++||
T Consensus 238 d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG 317 (678)
T KOG0127|consen 238 DSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG 317 (678)
T ss_pred cccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc
Confidence 0 0 0 000116899999999999999999999999
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHh
Q 004060 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (776)
Q Consensus 399 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 435 (776)
.|..+.|+.++.|+.++|.|||.|.+..+|+.||...
T Consensus 318 ~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 318 EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999966
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.1e-30 Score=296.84 Aligned_cols=230 Identities=22% Similarity=0.228 Sum_probs=191.3
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhc--cCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL--KNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l--~~~~l~gr~i~V~~a 273 (776)
+.+|||+|||+.+++++|+++|++||.|..|.|++. ++||||+|.+.++|.+|++.| ++..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 467999999999999999999999999999999853 689999999999999999974 678999999999765
Q ss_pred CC------------------CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHH
Q 004060 274 QD------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335 (776)
Q Consensus 274 ~~------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~ 335 (776)
.. ..+|+|.||++.+++++|+++|..|| .|..|.|+++.. .++|||+|.+.++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G--~V~~v~i~~~~~-----~~~afVef~~~~~A~ 148 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYG--KVLRIVTFTKNN-----VFQALVEFESVNSAQ 148 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccC--CEEEEEEEecCC-----ceEEEEEECCHHHHH
Confidence 21 12689999999999999999999999 799998876521 468999999999999
Q ss_pred HHHHHHcCCceecCCCCCceecccCCCCC--------------------C-----------c------------------
Q 004060 336 DAFKRLQKRDVLFGVDRPAKVSFADSFID--------------------P-----------G------------------ 366 (776)
Q Consensus 336 ~Al~~l~~~~i~~~~~~~~~v~~a~~~~~--------------------~-----------~------------------ 366 (776)
+|+..||+..+.-+ +..++|.|+....- . .
T Consensus 149 ~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 149 HAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999887422 34455544432100 0 0
Q ss_pred -----------------------------------------hhhhhhhhccccCCCCC-CChHHHHHHHHhhcCCeeEEE
Q 004060 367 -----------------------------------------DEIMAQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIE 404 (776)
Q Consensus 367 -----------------------------------------~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~ 404 (776)
.....+.++|||+||++ .+|+++|+++|+.||.|..|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 00012457999999998 699999999999999999999
Q ss_pred EeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 405 LARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 405 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
|+++. +|||||+|.+.++|..||..|||..|.|..
T Consensus 308 i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 308 FMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred EEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 99863 689999999999999999999999998733
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=2.2e-30 Score=298.80 Aligned_cols=239 Identities=23% Similarity=0.361 Sum_probs=193.5
Q ss_pred hccCcceEEEcCCCcCCcHHHHHHhhccC------------CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc
Q 004060 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQV------------GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (776)
Q Consensus 192 ~~~~~~tlfV~nLp~~~te~dL~~~f~~~------------G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~ 259 (776)
.....++|||+|||+.+|+++|.+||.++ +.|..+.+ ++.++||||+|.+.++|..||+ |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34567789999999999999999999975 23444443 3458999999999999999995 99
Q ss_pred CceecCccccccCC-----------------------------------CCCCcccccCccccccHHHHHHHHhhcCCcc
Q 004060 260 NPVINGKQCGVTPS-----------------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304 (776)
Q Consensus 260 ~~~l~gr~i~V~~a-----------------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~ 304 (776)
+..|.|+.|.|... ...++|||+|||..+++++|+++|+.|| .
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G--~ 321 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG--D 321 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--C
Confidence 99999999988521 1135899999999999999999999999 7
Q ss_pred eeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCCCc------------------
Q 004060 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG------------------ 366 (776)
Q Consensus 305 i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~~------------------ 366 (776)
|..+.|+.+ ..++.++|||||+|.+.++|..|+..|++..+. ++.|.|.++.......
T Consensus 322 i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~---~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T TIGR01642 322 LKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG---DNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL 397 (509)
T ss_pred eeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEECccCCCCCCccccccccccccccccc
Confidence 888888877 357889999999999999999999999998873 7778887764321100
Q ss_pred -h----hhhhhhhccccCCCCCC----------ChHHHHHHHHhhcCCeeEEEEeecC---CCCCcccEEEEEeCchHHH
Q 004060 367 -D----EIMAQVKTVFVDGLPAS----------WDEDRVRELLKNYGEITKIELARNM---PSAKRKDFGFVTFDTHDAA 428 (776)
Q Consensus 367 -~----~~~~~~~~l~V~nLp~~----------~t~~~L~~~F~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A 428 (776)
. ....++++|+|.||... ...++|+++|.+||.|+.|.|++.. .++...|+|||+|.+.++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 0 00124578899999642 1236899999999999999998753 3356689999999999999
Q ss_pred HHHHHHhCCCccCCC
Q 004060 429 VTCAKSINNAELGEG 443 (776)
Q Consensus 429 ~~A~~~l~g~~~~g~ 443 (776)
++||..|||..|.|.
T Consensus 478 ~~A~~~lnGr~~~gr 492 (509)
T TIGR01642 478 EKAMEGMNGRKFNDR 492 (509)
T ss_pred HHHHHHcCCCEECCe
Confidence 999999999999873
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=265.47 Aligned_cols=249 Identities=25% Similarity=0.496 Sum_probs=218.7
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCc-eecC--ccccccCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VING--KQCGVTPS 273 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~-~l~g--r~i~V~~a 273 (776)
.++||+.||..++|.+|+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+. +|-| ..|.|.++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 34999999999999999999999999999999999999999999999999999999999999875 5555 45556655
Q ss_pred -------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCce
Q 004060 274 -------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346 (776)
Q Consensus 274 -------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i 346 (776)
...++|||+-|++.+|+.+|+++|.+|| .|++|.|+++ ..+.++|||||.|.+.+.|..|++.||+...
T Consensus 115 d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG--~Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 115 DGERERIVEERKLFVGMLSKQCTENEVREIFSRFG--HIEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred chhhhccccchhhhhhhccccccHHHHHHHHHhhC--ccchhhheec--ccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 2357899999999999999999999999 8999999988 5788999999999999999999999999999
Q ss_pred ecCCCCCceecccCCCCCCc------------------------------------------------------------
Q 004060 347 LFGVDRPAKVSFADSFIDPG------------------------------------------------------------ 366 (776)
Q Consensus 347 ~~~~~~~~~v~~a~~~~~~~------------------------------------------------------------ 366 (776)
+.+...+|.|.|++......
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 99999999999975543110
Q ss_pred ----------------------------------------h---------h-----------------------------
Q 004060 367 ----------------------------------------D---------E----------------------------- 368 (776)
Q Consensus 367 ----------------------------------------~---------~----------------------------- 368 (776)
. .
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence 0 0
Q ss_pred ---------------------------------------------------------------------hhhhhhccccC
Q 004060 369 ---------------------------------------------------------------------IMAQVKTVFVD 379 (776)
Q Consensus 369 ---------------------------------------------------------------------~~~~~~~l~V~ 379 (776)
.......|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 00001479999
Q ss_pred CCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 380 GLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 380 nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
+||.+.-+.+|...|..||.|...++..++.|+.++.|+||.|++..+|..||..|||..|+....++.+
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999875533333
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.2e-29 Score=288.27 Aligned_cols=243 Identities=19% Similarity=0.295 Sum_probs=198.3
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCc--cccccCC-
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK--QCGVTPS- 273 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr--~i~V~~a- 273 (776)
.+|||.||++.+|+++|+++|+.||.|+.|.|+++.. .++|||+|.+.++|.+|++.||+..|.+. .|.|.++
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 4699999999999999999999999999999986532 46899999999999999999999988542 2222111
Q ss_pred --------------------------------------------------------------------------------
Q 004060 274 -------------------------------------------------------------------------------- 273 (776)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (776)
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence
Q ss_pred --------------------CCCCcccccCccc-cccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchH
Q 004060 274 --------------------QDSDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRS 332 (776)
Q Consensus 274 --------------------~~~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e 332 (776)
...++|||+||++ .+++++|+++|..|| .|..|+|+.+. ++||||+|.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~------~g~afV~f~~~~ 324 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK------KETALIEMADPY 324 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC------CCEEEEEECCHH
Confidence 1235899999998 699999999999999 89999998763 699999999999
Q ss_pred HHHHHHHHHcCCceecCCCCCceecccCCCCCCc--------------------------------hhhhhhhhccccCC
Q 004060 333 DAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG--------------------------------DEIMAQVKTVFVDG 380 (776)
Q Consensus 333 ~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~~--------------------------------~~~~~~~~~l~V~n 380 (776)
+|..|+..|++..+. +++|.|.++....... ..+..++.+|||+|
T Consensus 325 ~A~~Ai~~lng~~l~---g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~N 401 (481)
T TIGR01649 325 QAQLALTHLNGVKLF---GKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSN 401 (481)
T ss_pred HHHHHHHHhCCCEEC---CceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEec
Confidence 999999999998873 8889888764321000 00113457899999
Q ss_pred CCCCChHHHHHHHHhhcCC--eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc--ceEEEEEeccCC
Q 004060 381 LPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD--NKAKVRARLSRP 456 (776)
Q Consensus 381 Lp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~--~~~~v~~~~~~~ 456 (776)
||..+++++|+++|+.||. |..|+|.... + ..+++|||+|.+.++|.+||..||+..|.+.. ....|++.++++
T Consensus 402 Lp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 402 IPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 9999999999999999998 8888886543 2 35789999999999999999999999998743 334567777665
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=4.1e-29 Score=268.54 Aligned_cols=170 Identities=20% Similarity=0.398 Sum_probs=149.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+++|+++|+++|..||.|+.|+|+++..++++++||||+|.+.++|++||+.|++..|.+++|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999998888877653
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
.... ..
T Consensus 185 ~p~~------------------------------------------------------------------~~-------- 190 (346)
T TIGR01659 185 RPGG------------------------------------------------------------------ES-------- 190 (346)
T ss_pred cccc------------------------------------------------------------------cc--------
Confidence 2100 00
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
...++|||+|||..+|+++|+++|++||.|+.|.|+++..++++++||||+|.+.++|++||+
T Consensus 191 -----------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 191 -----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred -----------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 001579999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEEecc
Q 004060 434 SINNAELGEGDNKAKVRARLS 454 (776)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~ 454 (776)
.||+..|.++...+.|.++..
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HhCCCccCCCceeEEEEECCc
Confidence 999999987665555554443
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=4.9e-27 Score=264.46 Aligned_cols=150 Identities=19% Similarity=0.456 Sum_probs=138.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999653
Q ss_pred C-----------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHH
Q 004060 274 Q-----------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMD 336 (776)
Q Consensus 274 ~-----------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~ 336 (776)
. ..++|||+||+..+++++|+++|+.|| .|..+.|+.+. .+++++|||||+|.+.++|.+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D~-~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP-TGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEecC-CCCCcCCeEEEEECCHHHHHH
Confidence 2 236899999999999999999999999 89999999874 467899999999999999999
Q ss_pred HHHHHcCCce
Q 004060 337 AFKRLQKRDV 346 (776)
Q Consensus 337 Al~~l~~~~i 346 (776)
|+..||+..+
T Consensus 262 AI~amNg~el 271 (612)
T TIGR01645 262 AIASMNLFDL 271 (612)
T ss_pred HHHHhCCCee
Confidence 9999997765
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.8e-27 Score=232.07 Aligned_cols=221 Identities=23% Similarity=0.471 Sum_probs=179.8
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..+||||+||...+|++-|..||++.|.|+.++|+.+... |...+.. ..+.+... .
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~--------v~wa~~p-------~nQsk~t~---------~ 60 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK--------VNWATAP-------GNQSKPTS---------N 60 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc--------cccccCc-------ccCCCCcc---------c
Confidence 4578999999999999999999999999999999876210 0000000 00011001 1
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
..-.|||+.|...++-++|++.|.+|| .|.+++|+++ .++++++||+||.|-+.++|+.|+..|++.=| ..+.|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFG--evS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~I 134 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFG--EVSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTI 134 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhcccc--ccccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCeee---cccee
Confidence 123689999999999999999999999 8999999999 58999999999999999999999999999766 48899
Q ss_pred eecccCCCCCCc-----------hhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeC
Q 004060 355 KVSFADSFIDPG-----------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423 (776)
Q Consensus 355 ~v~~a~~~~~~~-----------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 423 (776)
+.+|+..+.... -......++|||+||+..+|+++|++.|..||.|..|+|.++ +|||||.|+
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEec
Confidence 999987654221 112234589999999999999999999999999999999988 899999999
Q ss_pred chHHHHHHHHHhCCCccCCCcceEEEEEeccC
Q 004060 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSR 455 (776)
Q Consensus 424 ~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~ 455 (776)
+.++|..||..|||.+|.|.. |+..+.+
T Consensus 209 tkEaAahAIv~mNntei~G~~----VkCsWGK 236 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQL----VRCSWGK 236 (321)
T ss_pred chhhHHHHHHHhcCceeCceE----EEEeccc
Confidence 999999999999999999844 4445544
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4e-25 Score=238.74 Aligned_cols=229 Identities=25% Similarity=0.475 Sum_probs=203.6
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC-CC
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-DS 276 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~-~~ 276 (776)
.|||+ +++|+..|.++|+.+|+|++|+++++. | +.|||||.|.++++|.+||..+|...|.|+.|+|.|+. +.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 899999999999999999999999998 6 99999999999999999999999999999999999984 34
Q ss_pred CcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCcee
Q 004060 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (776)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v 356 (776)
..|||.||+..++...|.++|+.|| +|..|+++.+.+. ++|| ||+|.+.+.|.+|+..+|+..+ .++++.|
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g--~ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~ll---~~kki~v 147 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFG--NILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGMLL---NGKKIYV 147 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhc--CeeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCccc---CCCeeEE
Confidence 5599999999999999999999999 9999999988543 8999 9999999999999999998766 3777777
Q ss_pred cccCCCCCCc---hhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 357 SFADSFIDPG---DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 357 ~~a~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
.......... ......-+.++|.|++.++++..|..+|..+|.|..+.|+.+. .+++++|+||.|.++++|..|+.
T Consensus 148 g~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred eeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHH
Confidence 6654432211 1133445789999999999999999999999999999999885 45699999999999999999999
Q ss_pred HhCCCccCC
Q 004060 434 SINNAELGE 442 (776)
Q Consensus 434 ~l~g~~~~g 442 (776)
.||+..+.+
T Consensus 227 ~l~~~~~~~ 235 (369)
T KOG0123|consen 227 TLNGKIFGD 235 (369)
T ss_pred hccCCcCCc
Confidence 999999974
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-24 Score=233.93 Aligned_cols=235 Identities=25% Similarity=0.468 Sum_probs=204.0
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC----
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS---- 273 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a---- 273 (776)
.|||.||+..++..+|..+|+.||.|++|++.++.. | ++|| ||+|.+.+.|.+|+..+|+..+++++|.|...
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999854 3 9999 99999999999999999999999999998544
Q ss_pred ----------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcC
Q 004060 274 ----------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (776)
Q Consensus 274 ----------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (776)
...+.+++.|++.+.++..|..+|..+| .+..+.++.+ ..+++++|+||.|.+.++|..|+..|++
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g--~i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYG--SITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccC--cceEEEEeec--CCCCCCCccceeecChhHHHHHHHhccC
Confidence 2246789999999999999999999999 8999999876 4566899999999999999999999998
Q ss_pred CceecCCCCCceecccCCCCCC-------------chhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCC
Q 004060 344 RDVLFGVDRPAKVSFADSFIDP-------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP 410 (776)
Q Consensus 344 ~~i~~~~~~~~~v~~a~~~~~~-------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~ 410 (776)
..+. +..+.|..+...... ..........|||.||+..++.+.|+.+|+.||.|+.++|+.+.
T Consensus 231 ~~~~---~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~- 306 (369)
T KOG0123|consen 231 KIFG---DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE- 306 (369)
T ss_pred CcCC---ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-
Confidence 8774 455555444432211 11223455789999999999999999999999999999998874
Q ss_pred CCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 411 SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 411 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
.++++||+||+|.+.++|.+|+..+|+..+.+.
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k 339 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGK 339 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCC
Confidence 789999999999999999999999999999863
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.5e-24 Score=226.88 Aligned_cols=236 Identities=23% Similarity=0.401 Sum_probs=186.9
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
...|+|+||||.+...+|+.+|+.||.|.+|.|.+... ++..|||||+|....+|.+||+.+|+..|.|+.|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56799999999999999999999999999999997655 45559999999999999999999999999999999988700
Q ss_pred --------------------------------------------------------------------------------
Q 004060 276 -------------------------------------------------------------------------------- 275 (776)
Q Consensus 276 -------------------------------------------------------------------------------- 275 (776)
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence
Q ss_pred ----------------CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHH
Q 004060 276 ----------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (776)
Q Consensus 276 ----------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~ 339 (776)
..+|||.|||+++|++.|.++|++|| .|..+.|+.+ ..+++++|+|||.|.+..+|..||.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--~v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--EVKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc--cceeEEEEec-cCCCCcccceEEEeccHHHHHHHHH
Confidence 05799999999999999999999999 6777777766 5799999999999999999999998
Q ss_pred HHc---CCceecCCCCCceecccCCCCC----------------------------------------------------
Q 004060 340 RLQ---KRDVLFGVDRPAKVSFADSFID---------------------------------------------------- 364 (776)
Q Consensus 340 ~l~---~~~i~~~~~~~~~v~~a~~~~~---------------------------------------------------- 364 (776)
... +..-.+..++.|.|..+-....
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 652 2231223477777766421110
Q ss_pred ----CchhhhhhhhccccCCCCCCChHHHHHHHHhhc-----CCeeE-EEEee---cCCCCCcccEEEEEeCchHHHHHH
Q 004060 365 ----PGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY-----GEITK-IELAR---NMPSAKRKDFGFVTFDTHDAAVTC 431 (776)
Q Consensus 365 ----~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~-v~i~~---~~~~g~~~g~afV~F~~~~~A~~A 431 (776)
.++.+....++|.|.|||..++...|..|+..- +.|.. |+.+. .-..+.+.||+||.|..++.|.+|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHh
Confidence 011222344789999999999999999888542 23322 22222 222367799999999999999999
Q ss_pred HHHh
Q 004060 432 AKSI 435 (776)
Q Consensus 432 ~~~l 435 (776)
+..+
T Consensus 513 lk~~ 516 (678)
T KOG0127|consen 513 LKVL 516 (678)
T ss_pred hhcc
Confidence 9866
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.90 E-value=5.4e-23 Score=231.90 Aligned_cols=171 Identities=19% Similarity=0.393 Sum_probs=146.0
Q ss_pred CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCce
Q 004060 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (776)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~ 355 (776)
.++|||+||++.+++++|+++|..|| .|..|.|+.+ ..+++++|||||+|.+.++|.+|+..|++..+. ++.|+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG--~I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~---GR~Ik 180 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIK 180 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccC--CEEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe---cceee
Confidence 45899999999999999999999999 7999999887 467899999999999999999999999998774 88888
Q ss_pred ecccCCCCCCch------hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHH
Q 004060 356 VSFADSFIDPGD------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (776)
Q Consensus 356 v~~a~~~~~~~~------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (776)
|.+......... ......++|||+||+..+++++|+++|+.||.|..|.|+++..+++++|||||+|.+.++|.
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 886543322111 11123478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCCcceEEEEEecc
Q 004060 430 TCAKSINNAELGEGDNKAKVRARLS 454 (776)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (776)
+||..||+..|+|. .+.|.....
T Consensus 261 kAI~amNg~elgGr--~LrV~kAi~ 283 (612)
T TIGR01645 261 EAIASMNLFDLGGQ--YLRVGKCVT 283 (612)
T ss_pred HHHHHhCCCeeCCe--EEEEEecCC
Confidence 99999999999873 344444443
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=8e-23 Score=224.02 Aligned_cols=245 Identities=20% Similarity=0.306 Sum_probs=195.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
+..+.|+|+|||..+..+.|..+|..||.|..|.|... -..|+|.|.+..+|.+|++.|....+....+.+.++
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 34567999999999999999999999999999955421 124999999999999999999865554444433222
Q ss_pred --------------------------------------------------------CCCCcccccCccccccHHHHHHHH
Q 004060 274 --------------------------------------------------------QDSDTLFLGNICKTWTKEALKEKL 297 (776)
Q Consensus 274 --------------------------------------------------------~~~~~l~V~nLp~~~te~~L~~~F 297 (776)
...++|||.||++..|.+.|..+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 011349999999999999999999
Q ss_pred hhcCCcceeEeEeeecCC--CCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCCC----chhhhh
Q 004060 298 KHYGVDNVEDLTLVEDSN--NEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP----GDEIMA 371 (776)
Q Consensus 298 ~~~G~~~i~~i~l~~~~~--~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~----~~~~~~ 371 (776)
...| .|..+.|..... +.-.+.|||||+|.+.++|..|++.|+++.+ .++.+.+.++...... ......
T Consensus 537 ~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~lk~S~~k~~~~~gK~~~~kk 611 (725)
T KOG0110|consen 537 SKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLELKISENKPASTVGKKKSKKK 611 (725)
T ss_pred HhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEEEEeccCcccccccccccccc
Confidence 9999 566665554332 2345779999999999999999999998887 4889988888722111 111112
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
..+.|.|.|||+..+..+|+.||..||.|..|+|+.....+..+|||||+|-++.+|..|+.+|..+.|-|+.+.+.+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 247899999999999999999999999999999998766677899999999999999999999999999986654443
No 21
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=1.8e-22 Score=221.97 Aligned_cols=166 Identities=22% Similarity=0.411 Sum_probs=146.7
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
..++|||+|||..+++++|+++|..+| .|..|+|+.+ ..+++++|||||+|.+.++|.+|+..|++..+ .++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---~g~~i 75 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIG--EIESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---QNKTI 75 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccC--CEEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccEEE---CCeeE
Confidence 357899999999999999999999999 8999999987 45788999999999999999999999999777 38999
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
.|.|+.+.... ...++|||+|||..+++++|+.+|.+||.|..+.|+.+..++.++|||||+|.+.++|+.||+.
T Consensus 76 ~v~~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 76 KVSYARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred EEEeecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 99988654332 1246899999999999999999999999999999999988899999999999999999999999
Q ss_pred hCCCccCCCcceEEEEE
Q 004060 435 INNAELGEGDNKAKVRA 451 (776)
Q Consensus 435 l~g~~~~g~~~~~~v~~ 451 (776)
|||..+.+....+.+..
T Consensus 151 l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 151 LNGTTPSGCTEPITVKF 167 (352)
T ss_pred hCCCccCCCceeEEEEE
Confidence 99999987544444433
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=7.5e-23 Score=211.59 Aligned_cols=175 Identities=26% Similarity=0.499 Sum_probs=153.3
Q ss_pred CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCce
Q 004060 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (776)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~ 355 (776)
.-+|||+-||..|++.+|+.+|++|| .|.+|.|++| +.++.++|||||.|.+.++|.+|+..||+...+.+...++.
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg--~V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYG--NVYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhC--ceeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34799999999999999999999999 8999999999 57889999999999999999999999999999999999999
Q ss_pred ecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHh
Q 004060 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (776)
Q Consensus 356 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 435 (776)
|.+++...... ...++|||+-|+..+|+.+|+.+|.+||.|++|.|+++. .+.++|+|||+|.+.+.|..||+.|
T Consensus 111 vk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 111 VKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred ecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhh
Confidence 99998765442 223899999999999999999999999999999999995 7899999999999999999999999
Q ss_pred CCCccCCCcceEEEEEeccCCCCC
Q 004060 436 NNAELGEGDNKAKVRARLSRPLQR 459 (776)
Q Consensus 436 ~g~~~~g~~~~~~v~~~~~~~~~~ 459 (776)
||..-..+ ....+.|.|+.+...
T Consensus 186 ng~~tmeG-cs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 186 NGTQTMEG-CSQPLVVKFADTQKD 208 (510)
T ss_pred ccceeecc-CCCceEEEecccCCC
Confidence 99865442 234455556555443
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.1e-21 Score=191.72 Aligned_cols=154 Identities=23% Similarity=0.559 Sum_probs=145.3
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC--
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a-- 273 (776)
...|||+.|..+++.++|++.|.+||+|.+++|++|..|++++||+||.|.++++|+.||..||+.=|.+|.|+.+++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --------------------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHH
Q 004060 274 --------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333 (776)
Q Consensus 274 --------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~ 333 (776)
.++++|||+||+..++++.|++.|..|| .|.+|++.++ +||+||.|.+.+.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~I~EVRvFk~-------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--PIQEVRVFKD-------QGYAFVRFETKEA 212 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC--cceEEEEecc-------cceEEEEecchhh
Confidence 3458999999999999999999999999 8999999988 9999999999999
Q ss_pred HHHHHHHHcCCceecCCCCCceecccCC
Q 004060 334 AMDAFKRLQKRDVLFGVDRPAKVSFADS 361 (776)
Q Consensus 334 A~~Al~~l~~~~i~~~~~~~~~v~~a~~ 361 (776)
|.+||-.+|+.+|. +..+++.|.+.
T Consensus 213 AahAIv~mNntei~---G~~VkCsWGKe 237 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIG---GQLVRCSWGKE 237 (321)
T ss_pred HHHHHHHhcCceeC---ceEEEEecccc
Confidence 99999999999994 88888888765
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=2.1e-21 Score=221.02 Aligned_cols=162 Identities=23% Similarity=0.423 Sum_probs=139.9
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
...++|||+|||..+++++|+++|.++| .|..|.|+.+ ..+++++|||||+|.+.++|.+||. |++..+. +++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~---g~~ 159 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVG--KVRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL---GRP 159 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC---Cee
Confidence 3456899999999999999999999999 8999999987 4678899999999999999999996 7777663 788
Q ss_pred ceecccCCCCCCch-------hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchH
Q 004060 354 AKVSFADSFIDPGD-------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426 (776)
Q Consensus 354 ~~v~~a~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 426 (776)
+.|.++........ ......++|||+|||..+|+++|+++|++||.|..|.|+.+..+|+++|||||+|.+.+
T Consensus 160 i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 88876543221110 01122589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCC
Q 004060 427 AAVTCAKSINNAELGE 442 (776)
Q Consensus 427 ~A~~A~~~l~g~~~~g 442 (776)
+|.+||..|||..|.|
T Consensus 240 ~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 240 EAKEALEVMNGFELAG 255 (457)
T ss_pred HHHHHHHhcCCcEECC
Confidence 9999999999999986
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=1.1e-21 Score=209.85 Aligned_cols=244 Identities=23% Similarity=0.373 Sum_probs=196.8
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
+..+|||+-.|...++..+|.+||+.+|+|..|.|+.+..++.++|.|||+|.+.+..-.||. |.|..+.|..|.|..+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 456789999999999999999999999999999999999999999999999999999999996 9999999999999765
Q ss_pred C--------------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHH
Q 004060 274 Q--------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333 (776)
Q Consensus 274 ~--------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~ 333 (776)
. +-..|||+||.+++++++|+.+|+.|| .|..|.+..+ ..+|.++||+||+|.+.++
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG--KIENVQLTKD-SETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcc--cceeeeeccc-cccccccCcceEEEecHHH
Confidence 1 113489999999999999999999999 7888888877 3589999999999999999
Q ss_pred HHHHHHHHcCCceecCCCCCceecccCCCCCC------------------------------------------------
Q 004060 334 AMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP------------------------------------------------ 365 (776)
Q Consensus 334 A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~------------------------------------------------ 365 (776)
|++|+..||+-.+ .|+.|+|.........
T Consensus 333 ar~a~e~lngfel---AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l 409 (549)
T KOG0147|consen 333 ARKALEQLNGFEL---AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISAL 409 (549)
T ss_pred HHHHHHHhcccee---cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHH
Confidence 9999999999444 3666665432100000
Q ss_pred -------------------chhhh-------hhhhccccCCCCCC--Ch--------HHHHHHHHhhcCCeeEEEEeecC
Q 004060 366 -------------------GDEIM-------AQVKTVFVDGLPAS--WD--------EDRVRELLKNYGEITKIELARNM 409 (776)
Q Consensus 366 -------------------~~~~~-------~~~~~l~V~nLp~~--~t--------~~~L~~~F~~~G~v~~v~i~~~~ 409 (776)
..... .++.|+.|.|+-.. .| .++|.+.+.+||.|..|.|..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n- 488 (549)
T KOG0147|consen 410 LLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN- 488 (549)
T ss_pred HhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-
Confidence 00000 23456667776322 11 2688888999999988888655
Q ss_pred CCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 410 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
+-|+.||.|.+.++|..|+..|||.+|.|..+...+
T Consensus 489 ----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~ 524 (549)
T KOG0147|consen 489 ----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKY 524 (549)
T ss_pred ----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEE
Confidence 248999999999999999999999999985544433
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=5.8e-21 Score=192.99 Aligned_cols=146 Identities=18% Similarity=0.463 Sum_probs=134.5
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC--
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a-- 273 (776)
-|.|||+.|.+++.++.|+..|..||+|++|.+..|+.|++.+|||||+|.-++.|..|++.+|+.++.|+.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred ---------------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHH
Q 004060 274 ---------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (776)
Q Consensus 274 ---------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al 338 (776)
+..++|||..+..++++++|+..|+.|| .|..|.|.+.. ....++||+||+|.+.+....|+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccC-CCCCccceeeEEeccccchHHHh
Confidence 2347899999999999999999999999 89999999874 56788999999999999999998
Q ss_pred HHHcCC
Q 004060 339 KRLQKR 344 (776)
Q Consensus 339 ~~l~~~ 344 (776)
..+|-.
T Consensus 270 asMNlF 275 (544)
T KOG0124|consen 270 ASMNLF 275 (544)
T ss_pred hhcchh
Confidence 876643
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=2.8e-21 Score=218.02 Aligned_cols=191 Identities=23% Similarity=0.372 Sum_probs=157.9
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCc-eEEEEEe-ecCCCCCCcceEEEEeccHHHHHHHhhhccC--ceecCccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLM-MNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGV 270 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~-i~~v~i~-~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~--~~l~gr~i~V 270 (776)
..++|||+|||+.+++++|.++|.+++. |+.+.++ ....++++++||||+|.+.++|..|++.|+. ..|.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4678999999999999999999999864 4444443 2334567899999999999999999998864 4678999999
Q ss_pred cCCCC-----------CCcccccCccccccHHHHHHHHhhc--CCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHH
Q 004060 271 TPSQD-----------SDTLFLGNICKTWTKEALKEKLKHY--GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (776)
Q Consensus 271 ~~a~~-----------~~~l~V~nLp~~~te~~L~~~F~~~--G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~A 337 (776)
.++.. .++|||+||++.+++++|+++|+.| | .|..|.++ ++||||+|.+.++|.+|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G--~I~rV~~~---------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG--KVERVKKI---------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCC--ceEEEEee---------cCeEEEEeCCHHHHHHH
Confidence 87633 3679999999999999999999999 7 78888765 56999999999999999
Q ss_pred HHHHcCCceecCCCCCceecccCCCCCC-----------------------chhhhhhhhccccCCCCCCChHHHHHHHH
Q 004060 338 FKRLQKRDVLFGVDRPAKVSFADSFIDP-----------------------GDEIMAQVKTVFVDGLPASWDEDRVRELL 394 (776)
Q Consensus 338 l~~l~~~~i~~~~~~~~~v~~a~~~~~~-----------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F 394 (776)
++.||+..| .++.|.|.|+.+.... .........+++++||++.+++..|.++|
T Consensus 286 i~~lnG~~i---~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f 362 (578)
T TIGR01648 286 MDELNGKEL---EGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFP 362 (578)
T ss_pred HHHhCCCEE---CCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcc
Confidence 999999987 4899999999764322 01112245789999999999999999999
Q ss_pred hhcCC
Q 004060 395 KNYGE 399 (776)
Q Consensus 395 ~~~G~ 399 (776)
..+|.
T Consensus 363 ~~~g~ 367 (578)
T TIGR01648 363 RMPGP 367 (578)
T ss_pred ccCcc
Confidence 98874
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.86 E-value=1.8e-20 Score=193.56 Aligned_cols=143 Identities=27% Similarity=0.460 Sum_probs=124.7
Q ss_pred cceEEEcCCCcCCcHHHHHHhhc-cCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFS-QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~-~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
.+.+||.|||+++.+.+|+.||. +.|+|+.|.++.| ..++.+|||.|+|+++|.+++|+++||...++|+.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 34599999999999999999996 5789999999998 569999999999999999999999999999999999885430
Q ss_pred --------------------------------------------------------------------------------
Q 004060 275 -------------------------------------------------------------------------------- 274 (776)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (776)
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence
Q ss_pred -----------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcC
Q 004060 275 -----------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (776)
Q Consensus 275 -----------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (776)
...++||.||...+....|++.|.-.| .+..|.+-.+ ..+++++||.++|...-.|.+|+..|..
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--kv~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--KVQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccce--eeeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 115788999999999999999999999 5777666544 5678899999999999999999998874
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=3.1e-20 Score=183.44 Aligned_cols=178 Identities=21% Similarity=0.438 Sum_probs=145.2
Q ss_pred cccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceec
Q 004060 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357 (776)
Q Consensus 278 ~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~ 357 (776)
+|||+|||...+.++|+.+|++|| +|.+|.|+ ++|+||..++...+..|+..||+.++ .+..|.|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~yg--kVlECDIv---------KNYgFVHiEdktaaedairNLhgYtL---hg~nInVe 69 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYG--KVLECDIV---------KNYGFVHIEDKTAAEDAIRNLHGYTL---HGVNINVE 69 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhC--ceEeeeee---------cccceEEeecccccHHHHhhccccee---cceEEEEE
Confidence 799999999999999999999999 89999998 67999999999999999999999988 47888888
Q ss_pred ccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC
Q 004060 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (776)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (776)
-++++.+ .+++|+|+||.+.++.++|+..|++||.|..|+|+++ |+||.|+-.++|..||+.|||
T Consensus 70 aSksKsk-------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 70 ASKSKSK-------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred eccccCC-------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccc
Confidence 7766532 3489999999999999999999999999999999954 999999999999999999999
Q ss_pred CccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004060 438 AELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLP 493 (776)
Q Consensus 438 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~rg~~rgg~g~~~g~~g~~g~~~~~~~~ 493 (776)
++|.|.. +.|.+..++-.. ..+-+..-++++ .|.-|+|..-+|....
T Consensus 135 ~~~~gk~--m~vq~stsrlrt-apgmgDq~~cyr------cGkeghwskEcP~~~~ 181 (346)
T KOG0109|consen 135 TEFQGKR--MHVQLSTSRLRT-APGMGDQSGCYR------CGKEGHWSKECPVDRT 181 (346)
T ss_pred cccccce--eeeeeecccccc-CCCCCCHHHhee------ccccccccccCCccCC
Confidence 9999744 445554444221 112222223333 3456778877776543
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.83 E-value=5.8e-20 Score=212.17 Aligned_cols=160 Identities=19% Similarity=0.423 Sum_probs=127.9
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCC----------cceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHc
Q 004060 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGV----------DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (776)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~----------~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~ 342 (776)
....++|||+|||+.+|+++|.++|..++. ..|..+.+. +.++||||+|.+.++|..||. |+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhhc-CC
Confidence 355679999999999999999999997621 123333332 348999999999999999995 88
Q ss_pred CCceecCCCCCceecccCCCCCC------------------------chhhhhhhhccccCCCCCCChHHHHHHHHhhcC
Q 004060 343 KRDVLFGVDRPAKVSFADSFIDP------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398 (776)
Q Consensus 343 ~~~i~~~~~~~~~v~~a~~~~~~------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 398 (776)
+..+. +.+|.|......... ........++|||+|||..+|+++|+++|+.||
T Consensus 244 g~~~~---g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 244 SIIYS---NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred CeEee---CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 76553 677777644322100 000122347899999999999999999999999
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 399 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
.|..|.|+.+..+|+++|||||+|.+.++|..||..|||..|.+.
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 999999999999999999999999999999999999999999863
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.3e-20 Score=179.18 Aligned_cols=169 Identities=20% Similarity=0.371 Sum_probs=151.9
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
...+.|.|.-||.++|+++|+.+|...| .|+.|+|+++ +.+|.+-||+||.|.+.++|++|+..||+-.+ ..+.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiG--eiEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KT 112 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIG--EIESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKT 112 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhccc--ceeeeeeeec-cccccccccceeeecChHHHHHHHhhhcceee---ccce
Confidence 4457899999999999999999999999 8999999999 58999999999999999999999999999877 4899
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
|+|+++.+....- ....|||.+||..+|..+|.++|++||.|..-+|+.+..||.++|.+||.|+-..+|+.||+
T Consensus 113 IKVSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 113 IKVSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred EEEEeccCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 9999997754432 23789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEEec
Q 004060 434 SINNAELGEGDNKAKVRARL 453 (776)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~ 453 (776)
.|||..-.|....++|+.+.
T Consensus 188 ~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred hccCCCCCCCCCCeEEEecC
Confidence 99999988766666665543
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.81 E-value=9.8e-20 Score=168.78 Aligned_cols=169 Identities=24% Similarity=0.379 Sum_probs=145.2
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
...+|||+||+..++++.|+++|-+.| .|.++.+.++ ..++..+||||++|.++++|.-|++.|+...+ -+++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqag--pVv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAG--PVVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcC--ceeeeecchh-hhcccccceeEEEEechhhhHHHHHHHHHHHh---cCcee
Confidence 446999999999999999999999999 7999999888 56778999999999999999999999995444 38999
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKI-ELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
+|..+..... ....+.+|||+||.+.+++..|.++|+.||.|... .|+++..||.+++||||.|.+.+.+.+|+.
T Consensus 82 rv~kas~~~~----nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 82 RVNKASAHQK----NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred EEEecccccc----cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 9988873222 22233789999999999999999999999998653 889999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEEeccC
Q 004060 434 SINNAELGEGDNKAKVRARLSR 455 (776)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~ 455 (776)
.|||..+.. ..++|...+.+
T Consensus 158 s~ngq~l~n--r~itv~ya~k~ 177 (203)
T KOG0131|consen 158 SMNGQYLCN--RPITVSYAFKK 177 (203)
T ss_pred HhccchhcC--CceEEEEEEec
Confidence 999999974 44556555543
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=1.1e-19 Score=179.64 Aligned_cols=157 Identities=26% Similarity=0.500 Sum_probs=140.5
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC-
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD- 275 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~- 275 (776)
.+|||+|||..+++.+|+.+|.+||+|++|.|+++ |+||...+...|..||..||+..|+|..|.|+.+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 35999999999999999999999999999999954 899999999999999999999999999999987754
Q ss_pred ---CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCC
Q 004060 276 ---SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (776)
Q Consensus 276 ---~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (776)
+++|+|+||.+.++.++|+..|+++| .+.++.|+ ++++||.|.-.++|..|++.|+++.+ .++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~yg--pviecdiv---------kdy~fvh~d~~eda~~air~l~~~~~---~gk 140 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYG--PVIECDIV---------KDYAFVHFDRAEDAVEAIRGLDNTEF---QGK 140 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccC--Cceeeeee---------cceeEEEEeeccchHHHHhccccccc---ccc
Confidence 47899999999999999999999999 79999998 67999999999999999999999988 499
Q ss_pred CceecccCCCCCCchhhhhhhhc
Q 004060 353 PAKVSFADSFIDPGDEIMAQVKT 375 (776)
Q Consensus 353 ~~~v~~a~~~~~~~~~~~~~~~~ 375 (776)
++.|+.+.+.....+.+..+..|
T Consensus 141 ~m~vq~stsrlrtapgmgDq~~c 163 (346)
T KOG0109|consen 141 RMHVQLSTSRLRTAPGMGDQSGC 163 (346)
T ss_pred eeeeeeeccccccCCCCCCHHHh
Confidence 99999988766555444433333
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=5.7e-19 Score=183.98 Aligned_cols=152 Identities=21% Similarity=0.409 Sum_probs=131.3
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
...+.|||+.||.++.+++|..+|++.| .|.+++||.+ .-.|.++|||||.|.+.+.|+.|++.||+..|. .++.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG--~I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--~GK~ 155 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIG--KIYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--PGKL 155 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcc--ceeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc--CCCE
Confidence 3456899999999999999999999999 8999999998 357899999999999999999999999999886 5777
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCC-eeEEEEeecCC-CCCcccEEEEEeCchHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMP-SAKRKDFGFVTFDTHDAAVTC 431 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~-~g~~~g~afV~F~~~~~A~~A 431 (776)
|.|..+-. .++|||+|||.++++++|.+.|++.++ |+.|.|...+. ..+++|||||+|+++..|..|
T Consensus 156 igvc~Sva-----------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~a 224 (506)
T KOG0117|consen 156 LGVCVSVA-----------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMA 224 (506)
T ss_pred eEEEEeee-----------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHH
Confidence 77765432 389999999999999999999999976 66776665543 368899999999999999999
Q ss_pred HHHhCCCccC
Q 004060 432 AKSINNAELG 441 (776)
Q Consensus 432 ~~~l~g~~~~ 441 (776)
..+|-...|.
T Consensus 225 RrKl~~g~~k 234 (506)
T KOG0117|consen 225 RRKLMPGKIK 234 (506)
T ss_pred HhhccCCcee
Confidence 8877665554
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.79 E-value=3.3e-19 Score=165.29 Aligned_cols=166 Identities=25% Similarity=0.425 Sum_probs=147.3
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
...||||+||+..++++.|.++|-+.|+|+.++|.++..+...+||||++|.+.++|.-|++.||...|.|+.|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCcee
Q 004060 275 -------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (776)
Q Consensus 275 -------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~ 347 (776)
...+|||+||.+.+++..|.+.|+.||. -+....++++ ..++.+++|+||.|.+.+.+.+|+..+++..+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc-cccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 2368999999999999999999999994 3334466666 36789999999999999999999999998876
Q ss_pred cCCCCCceecccCCCCCC
Q 004060 348 FGVDRPAKVSFADSFIDP 365 (776)
Q Consensus 348 ~~~~~~~~v~~a~~~~~~ 365 (776)
..+++.|.++......
T Consensus 165 --~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 165 --CNRPITVSYAFKKDTK 180 (203)
T ss_pred --cCCceEEEEEEecCCC
Confidence 4888999888665444
No 36
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=9.6e-17 Score=170.10 Aligned_cols=235 Identities=19% Similarity=0.273 Sum_probs=166.5
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC--
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a-- 273 (776)
...|.+.+|||.+|+++|.+||+.|+ |..+.+. ..+|+..|-|||+|.+.+++++||+ ++...+..+-|.|-.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 44588999999999999999999997 5655554 4579999999999999999999999 4666666677766433
Q ss_pred ---------------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHH
Q 004060 274 ---------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (776)
Q Consensus 274 ---------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al 338 (776)
.....|.|.+||+.||+++|.+||...-++.. .|.|+.+ ..+++.+-|||+|.+.+.|++||
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~d--~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPMD--QRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCccccc-ceeeecc--CCCCcccceEEEecCHHHHHHHH
Confidence 13357889999999999999999997753222 3444444 56779999999999999999999
Q ss_pred HHHc----CCceecCCCC-----------------C--------cee--cccCCC-------------------------
Q 004060 339 KRLQ----KRDVLFGVDR-----------------P--------AKV--SFADSF------------------------- 362 (776)
Q Consensus 339 ~~l~----~~~i~~~~~~-----------------~--------~~v--~~a~~~------------------------- 362 (776)
.... ..-|.+.... + .+. .+....
T Consensus 163 ~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred HHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 6321 1111100000 0 000 000000
Q ss_pred CC------------Cch----------------hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCc
Q 004060 363 ID------------PGD----------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414 (776)
Q Consensus 363 ~~------------~~~----------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~ 414 (776)
.. ... .......+++..+||...+..+|..+|...-.+ .|.|-.. .+|+.
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~ 320 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRA 320 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCcc
Confidence 00 000 000112578899999999999999999986555 6666555 47999
Q ss_pred ccEEEEEeCchHHHHHHHHHhCCCcc
Q 004060 415 KDFGFVTFDTHDAAVTCAKSINNAEL 440 (776)
Q Consensus 415 ~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (776)
.|-|+|+|.|.++|..|+. -++..+
T Consensus 321 TGEAdveF~t~edav~Ams-kd~anm 345 (510)
T KOG4211|consen 321 TGEADVEFATGEDAVGAMG-KDGANM 345 (510)
T ss_pred CCcceeecccchhhHhhhc-cCCccc
Confidence 9999999999999999975 344444
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=7.2e-18 Score=164.43 Aligned_cols=185 Identities=24% Similarity=0.475 Sum_probs=154.4
Q ss_pred CccccccCCC------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHH
Q 004060 265 GKQCGVTPSQ------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (776)
Q Consensus 265 gr~i~V~~a~------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al 338 (776)
++.|.|+++. +.++|||+-|.+...+++++.+|..|| .|.+|.+++. ..+.++||+||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG--~~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFG--NIEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccC--CcceeEEecC--CCCCCCCceEEEeccchHHHHHH
Confidence 4667777763 447899999999999999999999999 8999999876 57889999999999999999999
Q ss_pred HHHcCCceecCCCCCceecccCCCCCC-----------------------------------------------------
Q 004060 339 KRLQKRDVLFGVDRPAKVSFADSFIDP----------------------------------------------------- 365 (776)
Q Consensus 339 ~~l~~~~i~~~~~~~~~v~~a~~~~~~----------------------------------------------------- 365 (776)
..||+...+.+....+.|.|++.....
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 999999888887888888775332200
Q ss_pred --------------------------------------------------------------------------------
Q 004060 366 -------------------------------------------------------------------------------- 365 (776)
Q Consensus 366 -------------------------------------------------------------------------------- 365 (776)
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence
Q ss_pred ----------------------------------------chhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEE
Q 004060 366 ----------------------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405 (776)
Q Consensus 366 ----------------------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 405 (776)
........++|||-.||.+..+.+|.++|-.||.|+..+|
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 0000011278999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEeccCCC
Q 004060 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457 (776)
Q Consensus 406 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (776)
..|+.|+++|.|+||.|+++..|+.||..|||..|+- ..+++++.+|+
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM----KRLKVQLKRPk 365 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM----KRLKVQLKRPK 365 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhh----hhhhhhhcCcc
Confidence 9999999999999999999999999999999999974 22444555554
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=3.9e-17 Score=179.75 Aligned_cols=157 Identities=26% Similarity=0.480 Sum_probs=140.6
Q ss_pred EEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCC---CCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC-
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK---KNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg---~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~- 274 (776)
|||.||++++|.++|..+|...|.|+.|.|.+.+... .+.|||||+|.+.++|+.|++.|++++|.|+.|.|..+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999999888755432 256999999999999999999999999999999987764
Q ss_pred --------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHH
Q 004060 275 --------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR 340 (776)
Q Consensus 275 --------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~ 340 (776)
..+.|.|.|||+.++..+|+++|..|| .+..|+|... ...+.++|||||.|-+..+|..|+..
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--qlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFG--QLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhccc--ceeeeccchh-hcchhhccceeeeccCcHHHHHHHHh
Confidence 125899999999999999999999999 8999999877 56778899999999999999999999
Q ss_pred HcCCceecCCCCCceecccCC
Q 004060 341 LQKRDVLFGVDRPAKVSFADS 361 (776)
Q Consensus 341 l~~~~i~~~~~~~~~v~~a~~ 361 (776)
|..+.+. |+.|.++|+..
T Consensus 675 l~STHly---GRrLVLEwA~~ 692 (725)
T KOG0110|consen 675 LGSTHLY---GRRLVLEWAKS 692 (725)
T ss_pred hccccee---chhhheehhcc
Confidence 9966554 89999999876
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.7e-16 Score=149.75 Aligned_cols=71 Identities=21% Similarity=0.510 Sum_probs=68.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+||++.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999986
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.9e-16 Score=160.53 Aligned_cols=162 Identities=20% Similarity=0.410 Sum_probs=141.9
Q ss_pred CcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCcee
Q 004060 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (776)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v 356 (776)
++|||+.+.+.+.++.|+..|..|| .|..|.+..+ ..+++++|||||+|.-.+.|..|++.+|+..+ .++.++|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFG--PIKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml---GGRNiKV 187 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNIKV 187 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCC--Ccceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccccc---cCccccc
Confidence 4899999999999999999999999 6788877766 47899999999999999999999999998766 4888888
Q ss_pred cccCCCCCCchhh------hhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHH
Q 004060 357 SFADSFIDPGDEI------MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430 (776)
Q Consensus 357 ~~a~~~~~~~~~~------~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 430 (776)
.......+....+ ...-++|||..+..+.+++||+.+|+.||+|+.|.+.+...++..+||+||+|.+......
T Consensus 188 grPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 188 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred cCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 8665544433222 2344799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCCc
Q 004060 431 CAKSINNAELGEGD 444 (776)
Q Consensus 431 A~~~l~g~~~~g~~ 444 (776)
||..||=..|+|.-
T Consensus 268 AiasMNlFDLGGQy 281 (544)
T KOG0124|consen 268 AIASMNLFDLGGQY 281 (544)
T ss_pred Hhhhcchhhcccce
Confidence 99999998887643
No 41
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.8e-15 Score=139.71 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=68.2
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEec
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (776)
++|||+||+..+++.+|..+|..||.|..|+|..++ .|||||+|++..||..|+..|+|+.|+| +.|+|.+
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~ 81 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVEL 81 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccC----ceEEEEe
Confidence 789999999999999999999999999999999875 7999999999999999999999999987 4555555
Q ss_pred cCCCCC
Q 004060 454 SRPLQR 459 (776)
Q Consensus 454 ~~~~~~ 459 (776)
+....+
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 554333
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.65 E-value=2.3e-16 Score=164.80 Aligned_cols=199 Identities=23% Similarity=0.389 Sum_probs=155.2
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
+.++|||++|+|.++++.|+..|.+||+|++|.++++..++++++|+||+|++.+...++|.. ..+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 567899999999999999999999999999999999999999999999999999999988874 5567899999887773
Q ss_pred C------------CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHc
Q 004060 275 D------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (776)
Q Consensus 275 ~------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~ 342 (776)
. ..+|||+.|+..+++.+|++.|.++| .|..+.++.+ ..+.+.++|+||.|.+.+.+.+++.. .
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~-~ 159 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ-K 159 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec-ccccccccceeeEeccccccceeccc-c
Confidence 3 24899999999999999999999999 7888888887 57889999999999999999888742 2
Q ss_pred CCceecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCee
Q 004060 343 KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEIT 401 (776)
Q Consensus 343 ~~~i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 401 (776)
-+.| .++.+.|..+.+..................||....+.-.|..+|..|+.+.
T Consensus 160 f~~~---~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 160 FHDF---NGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred eeee---cCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccc
Confidence 2222 3667777666554433222211222333334555555555666777776554
No 43
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.65 E-value=2.1e-16 Score=169.68 Aligned_cols=169 Identities=23% Similarity=0.423 Sum_probs=141.9
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
.+.+++|+--|....+..+|.++|+.+| .|..|.++.+ ...+.++|.+||+|.+.+....|+ .|.|..++ +.+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~g--kVrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---g~p 249 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVG--KVRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---GVP 249 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhc--CcceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCCccc---Cce
Confidence 4557889888998999999999999999 8999999988 578889999999999999999998 47777664 788
Q ss_pred ceecccCCCCCCc---------hhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCc
Q 004060 354 AKVSFADSFIDPG---------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424 (776)
Q Consensus 354 ~~v~~a~~~~~~~---------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 424 (776)
+.|+......... .....+...|||+||..++++++|+.+|+.||.|..|.+.++..||+++||+||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 8887654332211 1111223449999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCccCCCcceEEE
Q 004060 425 HDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 425 ~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
.++|++|+..|||.+|-|..+++.+
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEE
Confidence 9999999999999999886655443
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=2.2e-15 Score=155.52 Aligned_cols=239 Identities=19% Similarity=0.253 Sum_probs=178.0
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccC--ceecCccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~--~~l~gr~i~V~~ 272 (776)
....|.|+|||+++++.+|..++..||+|+.+.+.+.+ ..|||+|.+.+.|...+..... ..+.|+.|-|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 45569999999999999999999999999999987642 2699999999999873332221 123344333322
Q ss_pred C---------------------------------C-------------CCCcccccCccccccHHHHHHHHhhcCCccee
Q 004060 273 S---------------------------------Q-------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVE 306 (776)
Q Consensus 273 a---------------------------------~-------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~ 306 (776)
+ . .--.++|.|+-..++-+-|-++|++|| .|.
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG--~Vl 178 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFG--FVL 178 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcc--eeE
Confidence 2 0 002466788888999999999999999 566
Q ss_pred EeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCC------------------CCc--
Q 004060 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI------------------DPG-- 366 (776)
Q Consensus 307 ~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~------------------~~~-- 366 (776)
.|.-+...+ .=-|+|+|.+...|..|-..|.+..|..+ ++.++++|+.-.. ...
T Consensus 179 KIiTF~Knn-----~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFTKNN-----GFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEeccc-----chhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 665543321 22378999999999999999999988665 5666666642110 000
Q ss_pred ------------------------------------hhhhhh--hhccccCCCCCC-ChHHHHHHHHhhcCCeeEEEEee
Q 004060 367 ------------------------------------DEIMAQ--VKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELAR 407 (776)
Q Consensus 367 ------------------------------------~~~~~~--~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~ 407 (776)
..+..+ ...|.|.||... +|.+.|..+|.-||.|.+|+|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 000011 367788999877 99999999999999999999998
Q ss_pred cCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEeccCC
Q 004060 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 408 ~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
++ +.-|+|+|.+...|+-|+..|+|..|.| +.+++.+++-
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SKH 372 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSKH 372 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecC----ceEEEeeccC
Confidence 85 5789999999999999999999999987 5566666653
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.5e-14 Score=134.32 Aligned_cols=164 Identities=20% Similarity=0.332 Sum_probs=132.9
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
...+|||+|||.++.+.+|.++|-+|| .|..|.|... -....||||+|++..+|+.|+..-++..+ .+..|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg--~i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rL 75 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYG--RIREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRL 75 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhc--ceEEEEeccC----CCCCCeeEEEecCccchhhhhhccccccc---CcceE
Confidence 456899999999999999999999999 7777777432 33478999999999999999997777766 48899
Q ss_pred eecccCCCCCC---------------------chhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCC
Q 004060 355 KVSFADSFIDP---------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413 (776)
Q Consensus 355 ~v~~a~~~~~~---------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~ 413 (776)
+|.|+...... .........+|.|.+||.+.+|++|++++.+-|.|....+.++
T Consensus 76 RVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----- 150 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----- 150 (241)
T ss_pred EEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----
Confidence 99997554211 1122234478999999999999999999999999999999876
Q ss_pred cccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEecc
Q 004060 414 RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454 (776)
Q Consensus 414 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (776)
|++.|+|...++.+-||..|+...+.--....-+.+...
T Consensus 151 --g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 151 --GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred --cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEeccc
Confidence 599999999999999999999998865444444444443
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.59 E-value=4.2e-15 Score=155.36 Aligned_cols=171 Identities=23% Similarity=0.470 Sum_probs=136.4
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
...+|||++|.|.++++.|+..|.++| .+..+.++++. .++++++|+||+|.+.....+++.....+ | .++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~G--ev~d~~vm~d~-~t~rsrgFgfv~f~~~~~v~~vl~~~~h~-~---dgr~v 77 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFG--EVTDCVVMRDP-STGRSRGFGFVTFATPEGVDAVLNARTHK-L---DGRSV 77 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccC--ceeeEEEeccC-CCCCcccccceecCCCcchheeecccccc-c---CCccc
Confidence 456899999999999999999999999 89999999995 56999999999999998888887643221 1 25555
Q ss_pred eecccCCCCCCch-hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 355 KVSFADSFIDPGD-EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 355 ~v~~a~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
.+..+.+...... .....+++|||++||..+++++|++.|.+||.|..+.|+.+..+.+.++|+||+|.+.+.+.+++.
T Consensus 78 e~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 78 EPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred cceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 5544433322111 111256899999999999999999999999999999999999999999999999999999999865
Q ss_pred HhCCCccCCCcceEEEEEeccC
Q 004060 434 SINNAELGEGDNKAKVRARLSR 455 (776)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~ 455 (776)
..-+.|++ +.|+|..+..+
T Consensus 158 -~~f~~~~g--k~vevkrA~pk 176 (311)
T KOG4205|consen 158 -QKFHDFNG--KKVEVKRAIPK 176 (311)
T ss_pred -cceeeecC--ceeeEeeccch
Confidence 56666764 45666665544
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.58 E-value=5e-14 Score=145.63 Aligned_cols=236 Identities=19% Similarity=0.272 Sum_probs=181.0
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC--ccccccCC--
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING--KQCGVTPS-- 273 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g--r~i~V~~a-- 273 (776)
.++|.|+-+.++-+-|..+|++||.|..|.-+. +.+.=.|+|+|.+.+.|..|...|++..|-. ..|+|.++
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEe----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 478999999999999999999999998776553 2223349999999999999999998876532 23333221
Q ss_pred -----------------------------------------------------------------CC--CCcccccCcc-
Q 004060 274 -----------------------------------------------------------------QD--SDTLFLGNIC- 285 (776)
Q Consensus 274 -----------------------------------------------------------------~~--~~~l~V~nLp- 285 (776)
.. +..|.|.||.
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 00 1345566664
Q ss_pred ccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCCC
Q 004060 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP 365 (776)
Q Consensus 286 ~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~ 365 (776)
..+|.+.|..+|..|| .|..|+|+... +-.|+|++.+..+|..|+..|++..+. +++|+|.+++...-.
T Consensus 308 ~~VT~d~LftlFgvYG--dVqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l~---gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYG--DVQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKLY---GKKLRVTLSKHTNVQ 376 (492)
T ss_pred hccchhHHHHHHhhhc--ceEEEEeeecC------CcceeeeecchhHHHHHHHHhhcceec---CceEEEeeccCcccc
Confidence 6689999999999999 89999998774 467999999999999999999998884 788888876432200
Q ss_pred ------------------------------chhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcc
Q 004060 366 ------------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRK 415 (776)
Q Consensus 366 ------------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~ 415 (776)
-..+..++.+|++.|+|.++++++|+.+|..-|-++..... .++.+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~ 452 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDR 452 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCc
Confidence 01233456799999999999999999999998876544332 23346
Q ss_pred cEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEeccC
Q 004060 416 DFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR 455 (776)
Q Consensus 416 g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~ 455 (776)
.+|++.|.+.+.|..|+-.|+++.+.++. .+++.|++
T Consensus 453 kmal~q~~sveeA~~ali~~hnh~lgen~---hlRvSFSk 489 (492)
T KOG1190|consen 453 KMALPQLESVEEAIQALIDLHNHYLGENH---HLRVSFSK 489 (492)
T ss_pred ceeecccCChhHhhhhccccccccCCCCc---eEEEEeec
Confidence 79999999999999999999999997653 34555543
No 48
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.1e-14 Score=159.04 Aligned_cols=236 Identities=20% Similarity=0.366 Sum_probs=177.0
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccC-----------C-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCce
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQV-----------G-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV 262 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~-----------G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (776)
....++|+++|+.++++.+..+|..- | .|..|.| +..+.||||+|.+.+.|..|+. ++...
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhc-ccchh
Confidence 34559999999999999999988753 2 2555554 3447899999999999999988 67777
Q ss_pred ecCccccccCC-----------------------------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeec
Q 004060 263 INGKQCGVTPS-----------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313 (776)
Q Consensus 263 l~gr~i~V~~a-----------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~ 313 (776)
+.|..+++... ...+.+||++||..+++.++++++..|| .+....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg--~lk~f~lv~d 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG--PLKAFRLVKD 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcc--cchhheeecc
Confidence 77776655211 1236899999999999999999999999 7888888887
Q ss_pred CCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCCC---c----------------hhhhhhhh
Q 004060 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP---G----------------DEIMAQVK 374 (776)
Q Consensus 314 ~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~---~----------------~~~~~~~~ 374 (776)
. .++.+++|||.+|.+......|+..||+..+. ++.+.|+.+-..... . +....++.
T Consensus 325 ~-~~g~skg~af~ey~dpsvtd~A~agLnGm~lg---d~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~ 400 (500)
T KOG0120|consen 325 S-ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG---DKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTE 400 (500)
T ss_pred c-ccccccceeeeeeeCCcchhhhhcccchhhhc---CceeEeehhhccchhccccCCccccccccchhhhcccCCCcch
Confidence 4 56899999999999999999999999988773 566666654221100 0 11112334
Q ss_pred ccccCCCCC--CC-h-------HHHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEeCchHHHHHHHHHhCCCccC
Q 004060 375 TVFVDGLPA--SW-D-------EDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (776)
Q Consensus 375 ~l~V~nLp~--~~-t-------~~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (776)
+|++.|+=. +. . -++|+..|.+||.|..|.|.+...+ .-..|..||+|.+.++|++|++.|+|++|.
T Consensus 401 Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~ 480 (500)
T KOG0120|consen 401 VLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA 480 (500)
T ss_pred hhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC
Confidence 555555421 11 1 1567777889999999999887222 234788999999999999999999999998
Q ss_pred CC
Q 004060 442 EG 443 (776)
Q Consensus 442 g~ 443 (776)
+.
T Consensus 481 nR 482 (500)
T KOG0120|consen 481 NR 482 (500)
T ss_pred Cc
Confidence 73
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=135.04 Aligned_cols=140 Identities=19% Similarity=0.335 Sum_probs=121.1
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|+|+|||.++.+.+|..||.+||.|+.|.|.. ......||||+|.+..+|+.||..-++..+.|..|.|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 3567899999999999999999999999999999853 3456789999999999999999999999999999999876
Q ss_pred C--------------------------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcc
Q 004060 274 Q--------------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321 (776)
Q Consensus 274 ~--------------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~k 321 (776)
. ....|.|.+||...+|++|++++.+.| .+.-..+.++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD-------- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD-------- 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc--------
Confidence 2 124689999999999999999999999 5555555443
Q ss_pred eEEEEeecchHHHHHHHHHHcCCce
Q 004060 322 GFAFLEFSSRSDAMDAFKRLQKRDV 346 (776)
Q Consensus 322 g~afV~F~s~e~A~~Al~~l~~~~i 346 (776)
+.+.|+|...++.+-|+..|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 5899999999999999998876544
No 50
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=1.5e-14 Score=136.74 Aligned_cols=78 Identities=22% Similarity=0.448 Sum_probs=72.7
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEec
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (776)
.+|.|.||.+.|+.++|+.+|++||.|..|.|+.++.|++++|||||.|....+|+.|+++|+|..|+| .++.|++
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg----RelrVq~ 89 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG----RELRVQM 89 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----ceeeehh
Confidence 789999999999999999999999999999999999999999999999999999999999999999998 4455555
Q ss_pred cC
Q 004060 454 SR 455 (776)
Q Consensus 454 ~~ 455 (776)
++
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 54
No 51
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.57 E-value=1.2e-12 Score=139.27 Aligned_cols=165 Identities=20% Similarity=0.275 Sum_probs=119.0
Q ss_pred CcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHH----HcCCceecCCCC
Q 004060 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR----LQKRDVLFGVDR 352 (776)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~----l~~~~i~~~~~~ 352 (776)
..|.+.+|||++|+++|.+||..++ |.++.+.+. +++..|-|||+|.+.+++++|+++ |...-|.+....
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 3577899999999999999999997 777666543 688899999999999999999984 333333333333
Q ss_pred CceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEeCchHHHHHH
Q 004060 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTC 431 (776)
Q Consensus 353 ~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~A 431 (776)
...+.|.-....... .....+|.+.+||+.||+++|.+||+..-.|.. |.|+.+ ..+++.|.|||+|++.+.|++|
T Consensus 85 ~~e~d~~~~~~g~~s--~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNS--SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred CccccccccCCCCCC--CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHH
Confidence 333333332222211 134478899999999999999999998776666 334444 5678999999999999999999
Q ss_pred HHHhCCCccCCCcceEEEEEec
Q 004060 432 AKSINNAELGEGDNKAKVRARL 453 (776)
Q Consensus 432 ~~~l~g~~~~g~~~~~~v~~~~ 453 (776)
|.. |...|. +.-|+|....
T Consensus 162 l~r-hre~iG--hRYIEvF~Ss 180 (510)
T KOG4211|consen 162 LGR-HRENIG--HRYIEVFRSS 180 (510)
T ss_pred HHH-HHHhhc--cceEEeehhH
Confidence 863 334443 4445554433
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.55 E-value=7e-14 Score=135.63 Aligned_cols=195 Identities=17% Similarity=0.331 Sum_probs=140.0
Q ss_pred eEEEcCCCcCCcHHHHHH----hhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 198 EVFVGGLDKDVVGDDLRK----VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~----~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
||||.||+..+..++|+. +|++||.|+.|.... +.+.+|-|||.|.+.+.|-.|+..|+|..|.|+.++|.++
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 899999999999998887 999999999999874 5778999999999999999999999999999999999999
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
.....++..--+..+..+ . .+....+.... ......+..+. ++...+
T Consensus 88 ~s~sdii~~~~~~~v~~~---------~--k~~~~~~~~~~-~~~~~ng~~~~--------------~~~~~~------- 134 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKE---------K--KINGEILARIK-QPLDTNGHFYN--------------MNRMNL------- 134 (221)
T ss_pred cCccchhhccCceecccc---------C--ccccccccccC-Ccccccccccc--------------cccccC-------
Confidence 777655543221111100 0 00000010000 00000111110 111101
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
...+ . .....+..+||+.|||..++.+.|..+|.+|.-...|+++... .+.|||+|.+...|..|..
T Consensus 135 -p~p~------~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 135 -PPPF------L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred -CCCc------c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhh
Confidence 0000 1 2223455899999999999999999999999999999988764 7899999999999999999
Q ss_pred HhCCCccC
Q 004060 434 SINNAELG 441 (776)
Q Consensus 434 ~l~g~~~~ 441 (776)
.|.+..|.
T Consensus 202 ~lq~~~it 209 (221)
T KOG4206|consen 202 ALQGFKIT 209 (221)
T ss_pred hhccceec
Confidence 99998885
No 53
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.55 E-value=1.3e-13 Score=140.77 Aligned_cols=237 Identities=23% Similarity=0.231 Sum_probs=187.3
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhc--cCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL--KNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l--~~~~l~gr~i~V~~a 273 (776)
.-.|.|++|-..+++.+|.+.++.||.|..|.++.. +..|.|+|.+.+-|+.|+... +...+.|++..++.+
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 445999999999999999999999999999988754 446999999999999998743 445667777666555
Q ss_pred C-------------CCCccc--ccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHH
Q 004060 274 Q-------------DSDTLF--LGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (776)
Q Consensus 274 ~-------------~~~~l~--V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al 338 (776)
. .+..|. |-|--..+|-+-|.+++..+| .|..|.|++.. ---|.|+|.+.+.|++|.
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~G--kVlRIvIfkkn------gVQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQG--KVLRIVIFKKN------GVQAMVEFDSVEVAQRAK 176 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCC--ceEEEEEEecc------ceeeEEeechhHHHHHHH
Confidence 1 222232 355567789999999999999 89999998762 345899999999999999
Q ss_pred HHHcCCceecCCCCCceecccCCCCCC-----------------------------------------------------
Q 004060 339 KRLQKRDVLFGVDRPAKVSFADSFIDP----------------------------------------------------- 365 (776)
Q Consensus 339 ~~l~~~~i~~~~~~~~~v~~a~~~~~~----------------------------------------------------- 365 (776)
..||+..|..+ ..+|++.++++..-.
T Consensus 177 ~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg 255 (494)
T KOG1456|consen 177 AALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSG 255 (494)
T ss_pred hhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCccc
Confidence 99999998765 677888876543200
Q ss_pred ------------------------chhhhhhhhccccCCCCCC-ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEE
Q 004060 366 ------------------------GDEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFV 420 (776)
Q Consensus 366 ------------------------~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV 420 (776)
...-..+...+.|-+|... ++-+.|..+|..||.|..|++++.+ .|.|.|
T Consensus 256 ~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamV 330 (494)
T KOG1456|consen 256 DRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMV 330 (494)
T ss_pred ccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEE
Confidence 0001123367889999877 6778999999999999999999875 689999
Q ss_pred EeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 421 TFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 421 ~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
++.+..+.+.|+..||+..+.|+.+.+.+..+
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 99999999999999999999886655555444
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=1.2e-13 Score=130.53 Aligned_cols=82 Identities=27% Similarity=0.604 Sum_probs=77.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||+.+++++|+++|.+||.|+.|.|+.+..++++++||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 43
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=134.97 Aligned_cols=160 Identities=21% Similarity=0.417 Sum_probs=133.0
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCc-eecC--cccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VING--KQCGVT 271 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~-~l~g--r~i~V~ 271 (776)
+.++|||+-|.....+++++.+|..||.|.+|.+.+.. .+.++|||||.|.+..+|..||..||+. ++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 45569999999999999999999999999999999864 5889999999999999999999999864 2222 112221
Q ss_pred CC------------------------------------------------------------------------------
Q 004060 272 PS------------------------------------------------------------------------------ 273 (776)
Q Consensus 272 ~a------------------------------------------------------------------------------ 273 (776)
++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 11
Q ss_pred --------------------------------------------------------------------------------
Q 004060 274 -------------------------------------------------------------------------------- 273 (776)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (776)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred --------------------------CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEe
Q 004060 274 --------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327 (776)
Q Consensus 274 --------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~ 327 (776)
.+.++|||-.||..+.+.+|.++|-.|| .|...+++.+ +.++.++.|+||.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivSaKVFvD-RATNQSKCFGFVS 333 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVSAKVFVD-RATNQSKCFGFVS 333 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc--ceeeeeeeeh-hccccccceeeEe
Confidence 1127899999999999999999999999 7888888777 5788999999999
Q ss_pred ecchHHHHHHHHHHcCCceecCCCCCceecccCC
Q 004060 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADS 361 (776)
Q Consensus 328 F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~ 361 (776)
|.+...+..||..||+-.|- .+.++|++..+
T Consensus 334 fDNp~SaQaAIqAMNGFQIG---MKRLKVQLKRP 364 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIG---MKRLKVQLKRP 364 (371)
T ss_pred cCCchhHHHHHHHhcchhhh---hhhhhhhhcCc
Confidence 99999999999999998773 56677765443
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.47 E-value=4.7e-13 Score=128.10 Aligned_cols=161 Identities=17% Similarity=0.250 Sum_probs=129.3
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
.-+||||.+||.++...+|..+|..|. ..+...|....+....++.+|||.|.+.+.|.+|++.||+..+-...+..+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~--GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFH--GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCC--CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 357999999999999999999999987 577777777766777788999999999999999999999988877777777
Q ss_pred eecccCCCCCCc-----------------------------------------------------h--------------
Q 004060 355 KVSFADSFIDPG-----------------------------------------------------D-------------- 367 (776)
Q Consensus 355 ~v~~a~~~~~~~-----------------------------------------------------~-------------- 367 (776)
.+.+++...+.. +
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 777764322100 0
Q ss_pred --------------hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 368 --------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 368 --------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
.......||||.||..+||+++|+.+|+.|--...++|... + ....|||+|++.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHH
Confidence 00001258999999999999999999999977666666432 2 25689999999999999999
Q ss_pred HhCCCccC
Q 004060 434 SINNAELG 441 (776)
Q Consensus 434 ~l~g~~~~ 441 (776)
.|.|..|.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99998874
No 57
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.1e-12 Score=129.10 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=74.3
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
.+-+||||.-|+.++++..|+..|+.||.|+.|.|+++..||+++|||||+|++..+..+|.+..+|.+|++.. |.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr--i~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR--ILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE--EEEE
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999744 4444
Q ss_pred Eecc
Q 004060 451 ARLS 454 (776)
Q Consensus 451 ~~~~ 454 (776)
+...
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 4443
No 58
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.44 E-value=1.4e-12 Score=132.74 Aligned_cols=194 Identities=19% Similarity=0.305 Sum_probs=132.8
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEE--------EEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~--------v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
..++.|||.|||.++|.+++.++|++||.|.. |+|.++.+ |+.+|-|++.|-..+.+..|++.|+...|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34566999999999999999999999998754 88888755 9999999999999999999999999999999
Q ss_pred ccccccCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCc
Q 004060 266 KQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345 (776)
Q Consensus 266 r~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~ 345 (776)
++|+|..++ |+.-|. ..+. ++.++ ...-.+-+..++...
T Consensus 211 ~~~rVerAk----------------------fq~Kge-----~~~~------~k~k~--------k~~~~kk~~k~q~k~ 249 (382)
T KOG1548|consen 211 KKLRVERAK----------------------FQMKGE-----YDAS------KKEKG--------KCKDKKKLKKQQQKL 249 (382)
T ss_pred cEEEEehhh----------------------hhhccC-----cCcc------ccccc--------ccccHHHHHHHHHhh
Confidence 999998662 221110 0000 00000 000011112222222
Q ss_pred eecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCC----Ch-------HHHHHHHHhhcCCeeEEEEeecCCCCCc
Q 004060 346 VLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPAS----WD-------EDRVRELLKNYGEITKIELARNMPSAKR 414 (776)
Q Consensus 346 i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~----~t-------~~~L~~~F~~~G~v~~v~i~~~~~~g~~ 414 (776)
+-+...+ .........++|.|.||-.- .+ +++|.+-+.+||.|..|.|.-. .+
T Consensus 250 ~dw~pd~------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hP 313 (382)
T KOG1548|consen 250 LDWRPDR------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HP 313 (382)
T ss_pred cccCCCc------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CC
Confidence 2111011 00111122366777776321 12 4677888999999999988744 34
Q ss_pred ccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 415 KDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 415 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
.|.+-|.|.+.++|..||+.|+|+.|.|+.+
T Consensus 314 dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 314 DGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred CceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 7899999999999999999999999997443
No 59
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.43 E-value=6.7e-12 Score=128.44 Aligned_cols=238 Identities=15% Similarity=0.188 Sum_probs=176.9
Q ss_pred EcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceec--CccccccCCCC---
Q 004060 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN--GKQCGVTPSQD--- 275 (776)
Q Consensus 201 V~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~--gr~i~V~~a~~--- 275 (776)
|-|-=..+|.+-|..++..+|+|..|.|++. +--.|.|+|.+.+.|++|...||+..|- ..+|+|..+++
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4455577999999999999999999999853 3456999999999999999999987663 23444443310
Q ss_pred --------------------------------------------------------------------------------
Q 004060 276 -------------------------------------------------------------------------------- 275 (776)
Q Consensus 276 -------------------------------------------------------------------------------- 275 (776)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred -----CCcccccCcc-ccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecC
Q 004060 276 -----SDTLFLGNIC-KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (776)
Q Consensus 276 -----~~~l~V~nLp-~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~ 349 (776)
...+.|-+|. -+++-+.|..+|-.|| +|..|++|+.. .+.|.|++.+..+.+.|+..||+..++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk------~gtamVemgd~~aver~v~hLnn~~lf-- 351 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTK------PGTAMVEMGDAYAVERAVTHLNNIPLF-- 351 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecc------cceeEEEcCcHHHHHHHHHHhccCccc--
Confidence 0223444444 3456788999999999 99999999875 788999999999999999999998773
Q ss_pred CCCCceecccCCCC--------------------------------CCchhhhhhhhccccCCCCCCChHHHHHHHHhhc
Q 004060 350 VDRPAKVSFADSFI--------------------------------DPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY 397 (776)
Q Consensus 350 ~~~~~~v~~a~~~~--------------------------------~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~ 397 (776)
+.+|.+.+++..- .....+..++++|+.-|.|..+|++.|..||...
T Consensus 352 -G~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek 430 (494)
T KOG1456|consen 352 -GGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEK 430 (494)
T ss_pred -cceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhc
Confidence 5666655432211 0122355677899999999999999999999877
Q ss_pred CC-eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcce--EEEEEeccCC
Q 004060 398 GE-ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK--AKVRARLSRP 456 (776)
Q Consensus 398 G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~--~~v~~~~~~~ 456 (776)
+. -+.|+|..-+ ....--++++|++..+|..||..||...|.+-.-. ..+++-++.+
T Consensus 431 ~v~~~svkvFp~k--serSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 431 DVPPTSVKVFPLK--SERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred CCCcceEEeeccc--ccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 64 3456665443 22345789999999999999999999998764333 3444444443
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.1e-13 Score=118.38 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=68.9
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++||||+||...+++++|.++|+++|.|..|.+-.++.+..+.|||||+|.+.++|..|++-+||..|..
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986
No 61
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=2.4e-12 Score=132.05 Aligned_cols=245 Identities=15% Similarity=0.173 Sum_probs=168.5
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
...+..|..++|||..++.+|..||.-.....-...+.....+...|.+.|.|.+.+.-.-|++. |...+.++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 34556688999999999999999998654332222222234577889999999999999999985 66667777777743
Q ss_pred C----------------------CCCCcccccCccccccHHHHHHHHhhcCCc--ceeEeEeeecCCCCCCcceEEEEee
Q 004060 273 S----------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVD--NVEDLTLVEDSNNEGMNRGFAFLEF 328 (776)
Q Consensus 273 a----------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~--~i~~i~l~~~~~~~g~~kg~afV~F 328 (776)
+ .+.-.|.+.+||++++..++..||...-.+ ....|.++. ...++..|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEe
Confidence 3 112346679999999999999999733211 234444443 35788999999999
Q ss_pred cchHHHHHHHHHHcC----CceecCCCC--------------CceecccCCCCC----CchhhhhhhhccccCCCCCCCh
Q 004060 329 SSRSDAMDAFKRLQK----RDVLFGVDR--------------PAKVSFADSFID----PGDEIMAQVKTVFVDGLPASWD 386 (776)
Q Consensus 329 ~s~e~A~~Al~~l~~----~~i~~~~~~--------------~~~v~~a~~~~~----~~~~~~~~~~~l~V~nLp~~~t 386 (776)
..+++|..||..-.. +.|.+.... ++......+... ..-.......||.+.+||+..+
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~At 293 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEAT 293 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhh
Confidence 999999999863211 111100000 010000000000 0001112257899999999999
Q ss_pred HHHHHHHHhhcCC-eeE--EEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccC
Q 004060 387 EDRVRELLKNYGE-ITK--IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (776)
Q Consensus 387 ~~~L~~~F~~~G~-v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (776)
.++|.+||..|-. |.. |.++.+ ..|++.|-|||+|.+.++|.+|+...+++...
T Consensus 294 vEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk 350 (508)
T KOG1365|consen 294 VEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMK 350 (508)
T ss_pred HHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc
Confidence 9999999999864 433 677776 46899999999999999999999888877663
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.7e-13 Score=134.57 Aligned_cols=145 Identities=20% Similarity=0.356 Sum_probs=120.1
Q ss_pred cccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceec
Q 004060 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357 (776)
Q Consensus 278 ~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~ 357 (776)
.|||++|++.+.+.+|..||..+| .+..+.+. .+|+||+|.+..+|..|+..|++..+. +..+.+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg--~~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~---~e~~vve 68 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYG--KIPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELC---GERLVVE 68 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcc--ccccceee---------cccceeccCchhhhhcccchhcCceec---ceeeeee
Confidence 689999999999999999999999 67777665 789999999999999999999998885 3337777
Q ss_pred ccCCCCCC------c---------hhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEe
Q 004060 358 FADSFIDP------G---------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422 (776)
Q Consensus 358 ~a~~~~~~------~---------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F 422 (776)
++...... . .....+.+.|+|.||...+.|++|.++|.++|.+..+.+. .+++||+|
T Consensus 69 ~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~F 140 (216)
T KOG0106|consen 69 HARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEF 140 (216)
T ss_pred cccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceee
Confidence 77642110 0 1112244778899999999999999999999999666653 56999999
Q ss_pred CchHHHHHHHHHhCCCccCCCc
Q 004060 423 DTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 423 ~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
.+..+|..||..|++..|.+..
T Consensus 141 s~~~da~ra~~~l~~~~~~~~~ 162 (216)
T KOG0106|consen 141 SEQEDAKRALEKLDGKKLNGRR 162 (216)
T ss_pred hhhhhhhhcchhccchhhcCce
Confidence 9999999999999999998633
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.1e-13 Score=129.50 Aligned_cols=82 Identities=32% Similarity=0.499 Sum_probs=76.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|.|.||+.++++.+|++||.+||.|..|.|.+++.||.++|||||+|.+.++|.+||+.|||.-++. +.+++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEEEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999998863 77888
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.|++|+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 888874
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.37 E-value=5.6e-12 Score=120.77 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=113.2
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeec-CCCCCCcceEEEEeccHHHHHHHhhhccCceec---Ccccccc
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN-PQTKKNKGFAFLRFATVEQARQAVTELKNPVIN---GKQCGVT 271 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d-~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~---gr~i~V~ 271 (776)
-+||||.+||.++...+|..+|..|--...+.|... +.....+.+|||+|.+...|..|+.+||+..|+ +..|.|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 468999999999999999999999865555555433 333346689999999999999999999998874 4455543
Q ss_pred CCC-----------------------------------------------------------------------------
Q 004060 272 PSQ----------------------------------------------------------------------------- 274 (776)
Q Consensus 272 ~a~----------------------------------------------------------------------------- 274 (776)
.++
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 320
Q ss_pred ---------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHH
Q 004060 275 ---------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (776)
Q Consensus 275 ---------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~ 339 (776)
...+|||.||..+||+++|+.+|+.|-...+..|+. ..| ...||++|...+.|..|+.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-----~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-----RGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-----CCC--cceEeecHHHHHHHHHHHH
Confidence 015899999999999999999999998433333332 222 5689999999999999999
Q ss_pred HHcCCcee
Q 004060 340 RLQKRDVL 347 (776)
Q Consensus 340 ~l~~~~i~ 347 (776)
.|++..+.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99987764
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=1.4e-12 Score=107.46 Aligned_cols=66 Identities=27% Similarity=0.626 Sum_probs=63.4
Q ss_pred cccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 376 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
|||+|||..+|+++|+++|.+||.|..|.|..+ .++..+++|||+|.+.++|++|++.|||..|.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999988 688999999999999999999999999999986
No 66
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=3.6e-12 Score=137.66 Aligned_cols=73 Identities=16% Similarity=0.334 Sum_probs=69.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||+++|+++|+++|.+||.|+.|+|+.+..+++++|||||+|.+.++|++||+.||+..|.+..
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 4589999999999999999999999999999999999999999999999999999999999999999998743
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.32 E-value=4e-12 Score=104.63 Aligned_cols=70 Identities=39% Similarity=0.727 Sum_probs=66.8
Q ss_pred EEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
|||+|||.++|+++|+++|.+||.|..+.++.+ .++..+++|||+|.+.++|++|+..|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788999999999999999999999999999998874
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.1e-12 Score=112.24 Aligned_cols=84 Identities=18% Similarity=0.360 Sum_probs=78.9
Q ss_pred HHhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 190 ~~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
....++++||||+||++.+++++|.+||+++|.|..|.|-.|+.+..+.|||||+|.+.++|..||+.++++.|..+.|.
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 004060 270 VTPS 273 (776)
Q Consensus 270 V~~a 273 (776)
|.+.
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 8765
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.5e-12 Score=122.40 Aligned_cols=83 Identities=31% Similarity=0.417 Sum_probs=79.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
.+.++|.|.||+.++++.+|.+||..||.|..|.|.+++.||.++|||||.|.+.++|.+||..||+.-++...|.|.++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
.++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 664
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.5e-12 Score=122.12 Aligned_cols=77 Identities=31% Similarity=0.626 Sum_probs=71.5
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
-++|||++|+|.+..+.|+.+|++||+|+++.|+.|+.+++++||+||+|.+.++|.+|++. -+.+|+||+..++.+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 35699999999999999999999999999999999999999999999999999999999995 456899999888765
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=6.1e-12 Score=122.32 Aligned_cols=76 Identities=24% Similarity=0.461 Sum_probs=67.1
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
++|||+||+|.+..+.|+++|++||+|+.+.|+.|+.+|++|||+||+|.+.++|.+|++.. +-.|+|+...|.+.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 78999999999999999999999999999999999999999999999999999999998743 34566655445443
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=4.7e-12 Score=124.50 Aligned_cols=137 Identities=26% Similarity=0.455 Sum_probs=116.7
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC---
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ--- 274 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~--- 274 (776)
.|||++||+.+.+.+|..||..||.|..|.+. .+|+||+|.+..+|..|+..||+.+|++..+.|.++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 59999999999999999999999999999875 6789999999999999999999999999887776653
Q ss_pred -----------------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecch
Q 004060 275 -----------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331 (776)
Q Consensus 275 -----------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~ 331 (776)
....|+|.|+...+.+++|.++|..+| .+....+ ..+++||+|.+.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g--~~~~~~~---------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG--EVTYVDA---------RRNFAFVEFSEQ 143 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC--CCchhhh---------hccccceeehhh
Confidence 124678899999999999999999999 3322222 278899999999
Q ss_pred HHHHHHHHHHcCCceecCCCCCcee
Q 004060 332 SDAMDAFKRLQKRDVLFGVDRPAKV 356 (776)
Q Consensus 332 e~A~~Al~~l~~~~i~~~~~~~~~v 356 (776)
++|..|+..|++..+. ++.|.+
T Consensus 144 ~da~ra~~~l~~~~~~---~~~l~~ 165 (216)
T KOG0106|consen 144 EDAKRALEKLDGKKLN---GRRISV 165 (216)
T ss_pred hhhhhcchhccchhhc---Cceeee
Confidence 9999999999988774 555544
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.24 E-value=1.4e-11 Score=101.59 Aligned_cols=66 Identities=26% Similarity=0.580 Sum_probs=61.2
Q ss_pred cccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 376 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
|||+|||+++++++|+++|..||.|..|.+..++. ++.+++|||+|.+.++|+.|+..+++..|.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 78999999999999999999999999999999976 8999999999999999999999999999986
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2e-12 Score=120.12 Aligned_cols=80 Identities=31% Similarity=0.515 Sum_probs=76.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
+++.-|||+|||+++|+-||.-+|++||+|+.|.+++|+.||+++||||+.|.+......|+..||+..|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999864
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=9e-11 Score=123.62 Aligned_cols=170 Identities=28% Similarity=0.432 Sum_probs=124.4
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
..+|||+|||..+|+++|.++|.+||.|..|.|..+..++.++|||||+|.+.+.|..|+..+++..|.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999987643
Q ss_pred --CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 276 --SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 276 --~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
.......++ + ...+....
T Consensus 195 ~~~~~~~~~~~-------------------------~---------------------------~~~~~~~~-------- 214 (306)
T COG0724 195 ASQPRSELSNN-------------------------L---------------------------DASFAKKL-------- 214 (306)
T ss_pred ccccccccccc-------------------------c---------------------------chhhhccc--------
Confidence 000000000 0 00000000
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
.............+++.+++..++...+..+|..+|.|..+.+...........+.++.+.....+..++.
T Consensus 215 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 ---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00000111223788999999999999999999999999888777665444445555555555555555544
Q ss_pred H
Q 004060 434 S 434 (776)
Q Consensus 434 ~ 434 (776)
.
T Consensus 286 ~ 286 (306)
T COG0724 286 R 286 (306)
T ss_pred c
Confidence 3
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.22 E-value=3.6e-11 Score=99.22 Aligned_cols=70 Identities=34% Similarity=0.653 Sum_probs=64.5
Q ss_pred EEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
|+|+|||+.+++++|.++|..||.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..|.|++|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999998999998873
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=2.7e-11 Score=122.64 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=71.9
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|+|.|||+...+-||+.+|.+||+|.+|.|+.+. .-+|||+||+|++.+||++|-+.|||..|.| ++|+|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG--RkIEVn 169 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG--RKIEVN 169 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec--eEEEEe
Confidence 345899999999999999999999999999999999874 4579999999999999999999999999997 556666
Q ss_pred EeccC
Q 004060 451 ARLSR 455 (776)
Q Consensus 451 ~~~~~ 455 (776)
.+..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 66554
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=2.5e-12 Score=119.56 Aligned_cols=99 Identities=22% Similarity=0.503 Sum_probs=81.3
Q ss_pred HHHHHHcCCceecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcc
Q 004060 336 DAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRK 415 (776)
Q Consensus 336 ~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~ 415 (776)
+.+..||...+.++ ..-.++|-..+... .-|||+|||+..|+-||..+|++||+|+.|.|+++..||+++
T Consensus 8 k~i~~lne~Elq~g--~~~~~SWH~~Ykds--------A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSK 77 (219)
T KOG0126|consen 8 KNIQKLNERELQLG--IADKKSWHQEYKDS--------AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSK 77 (219)
T ss_pred HHHHHhhHHhhccc--cccccchhhhcccc--------eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCccc
Confidence 44555666555433 22244554444333 679999999999999999999999999999999999999999
Q ss_pred cEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 416 DFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 416 g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
||||+.|++.....-|+..|||..|.|+.
T Consensus 78 GFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 78 GFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred ceEEEEecCccceEEEEeccCCceeccee
Confidence 99999999999999999999999998744
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.20 E-value=4.2e-11 Score=120.94 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=62.7
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
.++|||+||++.+|+++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|+.||. |||..|.+..+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V 72 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSV 72 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceE
Confidence 37999999999999999999999999999999998853 47899999999999999995 99999987443
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.19 E-value=3.2e-10 Score=118.45 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=127.7
Q ss_pred CCCCcccccCccccccHHHHHHHHhh-cCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKH-YGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (776)
...+.+||.|||+++.|++|+++|.. .| .|+-|.|+.+ ..+++++||.|+|++++.+++|++.|+...+. ++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvG--ev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~---GR 114 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVG--EVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKYEVN---GR 114 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcC--ceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhcccc---Cc
Confidence 33456999999999999999999974 45 7888888877 57899999999999999999999999987763 66
Q ss_pred CceecccCCCC---------------------------------------------CC------------c---------
Q 004060 353 PAKVSFADSFI---------------------------------------------DP------------G--------- 366 (776)
Q Consensus 353 ~~~v~~a~~~~---------------------------------------------~~------------~--------- 366 (776)
+|.|.-..... .. .
T Consensus 115 ~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~ 194 (608)
T KOG4212|consen 115 ELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNY 194 (608)
T ss_pred eEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhh
Confidence 66654311100 00 0
Q ss_pred -------------h-hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHH
Q 004060 367 -------------D-EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 367 -------------~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
. ....-..++||.||...+....|++.|.--|.|+.|.+-.++. |.++|||.|+|..+-.|..||
T Consensus 195 ~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 195 NLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHH
Confidence 0 0011235789999999999999999999999999999998875 588999999999999999999
Q ss_pred HHhCCCccC
Q 004060 433 KSINNAELG 441 (776)
Q Consensus 433 ~~l~g~~~~ 441 (776)
..|++.-+.
T Consensus 274 sml~~~g~~ 282 (608)
T KOG4212|consen 274 SMLDRQGLF 282 (608)
T ss_pred HhhccCCCc
Confidence 999885543
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=4.7e-11 Score=105.65 Aligned_cols=84 Identities=23% Similarity=0.361 Sum_probs=75.7
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...+.|||.++...+|+++|.+.|..||+|++|.|-.++.||..+|||+|+|++...|++||..|||..|.+.. +.|.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~--v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN--VSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc--eeEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998743 5555
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
..|.++
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 556554
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.4e-11 Score=119.72 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=73.6
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
=+||||+-|+.++++..|+..|..||+|..|.|+.++.||+++|||||+|....++..|.+..++..|+|+.|.|..
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999987753
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1e-10 Score=118.14 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=70.0
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. +++||||+|.+.++|..||. |++..|.|+.|.|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999998753 57999999999999999996 999999999999988753
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=5.5e-11 Score=110.38 Aligned_cols=73 Identities=32% Similarity=0.474 Sum_probs=68.3
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
.++|||+||+..+++.+|..+|..||+|..|.|..+ ..|||||+|.+..+|..|+..|++..|+|..|.|+.+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 677999999999999999999999999999999864 5899999999999999999999999999999988764
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=5.2e-11 Score=113.04 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=74.5
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
-++|.|-||.+-++.++|..+|.+||.|.+|.|..+..|+.++|||||.|....+|+.|+.+|++.+|+|+.|.|+.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 356999999999999999999999999999999999999999999999999999999999999999999999998754
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.12 E-value=1.2e-10 Score=123.11 Aligned_cols=72 Identities=15% Similarity=0.311 Sum_probs=64.9
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCch--HHHHHHHHHhCCCccCCCcceEE
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH--DAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~--~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
..+|||+||++.+++++|..+|..||.|..|.|+ +.+| +|||||+|.+. .++.+||..|||..+.|+.+++.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4789999999999999999999999999999999 4467 99999999987 78999999999999998664444
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=6.6e-11 Score=104.73 Aligned_cols=80 Identities=23% Similarity=0.492 Sum_probs=77.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
.....|||.++...+|+++|...|..||+|+.|+|-.+..||..+|||+|+|.+.+.|++|+..||+..|.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999986
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=3.8e-10 Score=92.48 Aligned_cols=66 Identities=30% Similarity=0.670 Sum_probs=61.8
Q ss_pred ccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+|+|.|||..+++++|+++|.+||.|..+.+..+. +.++++|||+|.+.++|+.|+..|++..|.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 58999999999999999999999999999998775 6778999999999999999999999999975
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.08 E-value=2.5e-10 Score=113.45 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=61.8
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..+|||+||++.+|+++|++||+.||.|..|.|+++. ..++||||+|.+.++|+.|+ .|||..|.+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 4799999999999999999999999999999999884 44579999999999999998 59999998744
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=2.6e-10 Score=96.47 Aligned_cols=67 Identities=15% Similarity=0.383 Sum_probs=62.4
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
++.|||.|||+.+|.+++.++|.+||.|.+|+|-..+.| +|.|||.|++..+|.+|+.+|+|..+.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCC
Confidence 378999999999999999999999999999999876544 8999999999999999999999999986
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=5.5e-10 Score=91.11 Aligned_cols=65 Identities=32% Similarity=0.629 Sum_probs=61.7
Q ss_pred cCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 378 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
|+|||..+++++|+++|.+||.|..|.|..+..++.++++|||+|.+.++|..|+..|++..|.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 68999999999999999999999999999988788999999999999999999999999999875
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1e-10 Score=111.73 Aligned_cols=83 Identities=28% Similarity=0.538 Sum_probs=77.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||++|...+++.-|...|-+||.|+.|.|+.+..+++.+|||||+|+..++|.+||..||+.+|.| .++++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999987 66777
Q ss_pred eccCCCC
Q 004060 452 RLSRPLQ 458 (776)
Q Consensus 452 ~~~~~~~ 458 (776)
.+++|..
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 8887754
No 93
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=116.10 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=71.8
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
...|+|.|||+...+.||+.+|.+||+|++|.|+.+. -.+|||+||+|.+.++|.+|-.+||+++|.||+|.|+.+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3459999999999999999999999999999999864 5689999999999999999999999999999999998773
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.06 E-value=2.2e-10 Score=121.16 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=70.5
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccH--HHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV--EQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~--e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..+|||+||++.+++++|..+|..||.|..|.|+ ..+| +|||||+|.+. .++.+||..||+..|.|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4679999999999999999999999999999999 4456 99999999987 7899999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
.+.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 543
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=6.9e-10 Score=90.92 Aligned_cols=71 Identities=35% Similarity=0.670 Sum_probs=66.4
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
+|+|.|||..++.++|+++|.+||.|..+.++.+. +.++++|||+|.+.+.|..|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998765 778899999999999999999999999999988876
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.05 E-value=4.7e-10 Score=111.45 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=70.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
...+|||+||++.+|+++|++||+.||.|..|.|+.+. ...+||||+|.+.+.|..|+. |++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45789999999999999999999999999999999874 456899999999999999996 99999999999998764
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 97
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=5.4e-11 Score=134.21 Aligned_cols=218 Identities=18% Similarity=0.159 Sum_probs=173.4
Q ss_pred CcceEEEcCCCcCCcHH-HHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGD-DLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~-dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
....+.+.|+-+..... .++..|..++.|..|++......-+...++++.+.....++.|.. ..+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34557788887776665 678889999999999987633333344489999999999998887 4555677777776555
Q ss_pred CC----------------CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHH
Q 004060 274 QD----------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (776)
Q Consensus 274 ~~----------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~A 337 (776)
.. ..++||.||+..+.+.+|...|..++.+.+..+. ...+.+..+|.||+.|.....+.+|
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH---HHhhccccccceeeEeecCCchhhh
Confidence 22 2478999999999999999999999944444443 2346778899999999999999999
Q ss_pred HHHHcCCceecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccE
Q 004060 338 FKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417 (776)
Q Consensus 338 l~~l~~~~i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~ 417 (776)
+.......+ + ...|||.|+|+..|.+.|+.+|.++|.++.+.++..+ .|+++|.
T Consensus 726 V~f~d~~~~----g---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~ 779 (881)
T KOG0128|consen 726 VAFRDSCFF----G---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGK 779 (881)
T ss_pred hhhhhhhhh----h---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccc
Confidence 985443322 1 1679999999999999999999999999999877664 6899999
Q ss_pred EEEEeCchHHHHHHHHHhCCCccCC
Q 004060 418 GFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 418 afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
|||.|.+..+|..++..++...+..
T Consensus 780 a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 780 ARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred eeccCCCcchhhhhcccchhhhhhh
Confidence 9999999999999999888887764
No 98
>smart00360 RRM RNA recognition motif.
Probab=99.00 E-value=1.2e-09 Score=89.16 Aligned_cols=70 Identities=39% Similarity=0.690 Sum_probs=66.1
Q ss_pred EcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 201 V~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
|+|||..+++++|+++|.+||.|..+.+..+..++.++++|||+|.+.+.|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6799999999999999999999999999998878899999999999999999999999999999988876
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.7e-10 Score=108.02 Aligned_cols=83 Identities=22% Similarity=0.523 Sum_probs=79.1
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||++|..++++.-|...|..||.|+.|.|..|..+.+.++|+||+|...++|..||..||...|.|+.|+|+.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
.+.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 665
No 100
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.8e-09 Score=91.49 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=67.9
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...|||.|||+.+|.+++.++|.+||.|.+|+|-. +...+|.|||.|.+..+|++|+..|++..+.++-|.|...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 44699999999999999999999999999999964 4566999999999999999999999999999998887654
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=4.8e-09 Score=86.34 Aligned_cols=67 Identities=33% Similarity=0.674 Sum_probs=62.0
Q ss_pred ccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+|+|.|||..+++++|+++|..||.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 5899999999999999999999999999999987654 678999999999999999999999998875
No 102
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.91 E-value=4.9e-09 Score=114.09 Aligned_cols=67 Identities=27% Similarity=0.486 Sum_probs=56.3
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (776)
.+|||.|||.+++...|+++|.+||.|+...|..-...++...||||+|.+.++++.||.+- -..|+
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig 355 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG 355 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC
Confidence 45999999999999999999999999999888765444555599999999999999999854 33444
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=98.91 E-value=3.6e-09 Score=87.21 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=51.0
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 387 EDRVRELLK----NYGEITKIE-LARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 387 ~~~L~~~F~----~~G~v~~v~-i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+++|+++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||+.|.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 568888888 999999995 7777666 89999999999999999999999999999873
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.90 E-value=5.6e-09 Score=85.92 Aligned_cols=73 Identities=40% Similarity=0.696 Sum_probs=67.5
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
+|+|+|||..+++++|+++|..+|.|..+.+..+..+ ..+++|||+|.+.+.|..|+..+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987654 678999999999999999999999999999998775
No 105
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.89 E-value=3.4e-09 Score=111.51 Aligned_cols=72 Identities=31% Similarity=0.603 Sum_probs=68.9
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
.++|||+|||..+|+++|.++|.+||.|..|.|..+..+++++|||||+|.+.++|..|+..|++..|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999998733
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.9e-08 Score=108.62 Aligned_cols=164 Identities=18% Similarity=0.361 Sum_probs=116.2
Q ss_pred CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcce---EEEEeecchHHHHHHHHHHcC--Cceec-C
Q 004060 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG---FAFLEFSSRSDAMDAFKRLQK--RDVLF-G 349 (776)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg---~afV~F~s~e~A~~Al~~l~~--~~i~~-~ 349 (776)
+++|||++||+.++++.|...|..||...|.--. .........++| |+|+.|+++.....-+..... ..+.+ .
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~-k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPG-KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCC-CccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 4789999999999999999999999943222221 111122334566 999999999988877765432 11111 0
Q ss_pred CC-----CCcee-cc--cC-CCCCCchhhhhhhhccccCCCCCCChHHHHHHHHh-hcCCeeEEEEeecCCCCCcccEEE
Q 004060 350 VD-----RPAKV-SF--AD-SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLK-NYGEITKIELARNMPSAKRKDFGF 419 (776)
Q Consensus 350 ~~-----~~~~v-~~--a~-~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~af 419 (776)
.. +.++| -| ++ .+.........+.+||||++||.-++.++|..||. -||.|..|-|-.|++-+.++|-|=
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 01 10111 00 11 11111234455679999999999999999999998 699999999999988899999999
Q ss_pred EEeCchHHHHHHHH----HhCCCcc
Q 004060 420 VTFDTHDAAVTCAK----SINNAEL 440 (776)
Q Consensus 420 V~F~~~~~A~~A~~----~l~g~~~ 440 (776)
|+|.+..+-.+||. .|+...|
T Consensus 418 VtFsnqqsYi~AIsarFvql~h~d~ 442 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISARFVQLDHTDI 442 (520)
T ss_pred eeecccHHHHHHHhhheEEEecccc
Confidence 99999999999987 4555555
No 107
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.86 E-value=7e-09 Score=111.51 Aligned_cols=82 Identities=20% Similarity=0.443 Sum_probs=76.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
.-.++|||.+|...+...+|++||++||+|+-++|+++..+...++|+||++.+.++|.+||..||.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34667999999999999999999999999999999999999889999999999999999999999999999999999877
Q ss_pred CC
Q 004060 274 QD 275 (776)
Q Consensus 274 ~~ 275 (776)
.+
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 43
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.85 E-value=4.2e-09 Score=115.40 Aligned_cols=69 Identities=25% Similarity=0.490 Sum_probs=68.0
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
++|||+|||+++++++|..+|+..|.|..++++.|+.||+++|||||+|.+.++|..|++.|||.+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g 87 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG 87 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999987
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.8e-09 Score=110.11 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=78.2
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
+.....|||..|.+-+|.++|.-+|+.||+|..|.|+++..||.+..||||+|.+.+.+++|.-+|++..|..+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 004060 273 SQD 275 (776)
Q Consensus 273 a~~ 275 (776)
++.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 643
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.83 E-value=4.6e-09 Score=115.08 Aligned_cols=79 Identities=33% Similarity=0.529 Sum_probs=76.6
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
++|||+|||+++++++|..+|+..|.|..++++.|..||+++||||++|.+.+.|..|++.||+..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998744
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=6.1e-09 Score=99.81 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=69.8
Q ss_pred hccccCCCCCCChHHHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNY-GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
..++|..||..+.+..|..+|.+| |.|..+++.+++.||.++|||||+|++.+.|.-|.+.||+..|.+..+.|.|
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 678999999999999999999998 7888888889999999999999999999999999999999999986655555
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=7.5e-09 Score=113.86 Aligned_cols=159 Identities=23% Similarity=0.401 Sum_probs=122.9
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
..+|||++||..+++.++++++..||.+....++.+..++.+++|||.+|.+......|+..||+..+.+++|.|..+-.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999888866511
Q ss_pred ------------------------------CCcccccCcc--ccc-c-------HHHHHHHHhhcCCcceeEeEeeecC-
Q 004060 276 ------------------------------SDTLFLGNIC--KTW-T-------KEALKEKLKHYGVDNVEDLTLVEDS- 314 (776)
Q Consensus 276 ------------------------------~~~l~V~nLp--~~~-t-------e~~L~~~F~~~G~~~i~~i~l~~~~- 314 (776)
+..|++.|+- ..+ . .++|+.-+.+|| .|..|.+.+..
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYP 446 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCC
Confidence 1112222210 000 1 134455566888 67777776652
Q ss_pred -CCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceeccc
Q 004060 315 -NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA 359 (776)
Q Consensus 315 -~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a 359 (776)
.......|..||+|.+.++|++|+..|+|..+. ++.+...|-
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~---nRtVvtsYy 489 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA---NRTVVASYY 489 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeC---CcEEEEEec
Confidence 123456788999999999999999999999883 666655543
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3e-09 Score=108.62 Aligned_cols=75 Identities=13% Similarity=0.332 Sum_probs=70.8
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..+.+.|||.-|++-+|.++|.-||+.||+|..|.|+++..||.+-.||||+|++.++|++|.-+|++..|....
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 345589999999999999999999999999999999999999999999999999999999999999999998744
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=1.8e-08 Score=82.96 Aligned_cols=61 Identities=21% Similarity=0.503 Sum_probs=54.9
Q ss_pred HHHHHHhhc----cCCceEEEE-EeecCCC--CCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 210 GDDLRKVFS----QVGEVTEVR-LMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 210 e~dL~~~f~----~~G~i~~v~-i~~d~~t--g~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
+++|+++|. +||.|..|. |+.+..+ +.++|||||+|.+.++|.+|++.||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999996 7777666 889999999999999999999999999999999875
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=3.3e-08 Score=77.54 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=43.4
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 390 VRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 390 L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
|.++|++||.|..|.+..+. +++|||+|.+.++|+.|+..|||..|.|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g 48 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNG 48 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 78999999999999998663 5899999999999999999999999987
No 116
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.73 E-value=1.3e-08 Score=106.80 Aligned_cols=177 Identities=20% Similarity=0.240 Sum_probs=128.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..+++|++++.+.+.+.++..++...|.+..+.+........++++++|.|...+.+..||.......+.+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~- 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN- 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc-
Confidence 4667999999999999999999999998888888877788899999999999999999999853322222222211100
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
.....+. .+.... ..
T Consensus 166 --------------------------------~~~~~~~----------------------------~n~~~~----~~- 180 (285)
T KOG4210|consen 166 --------------------------------TRRGLRP----------------------------KNKLSR----LS- 180 (285)
T ss_pred --------------------------------ccccccc----------------------------cchhcc----cc-
Confidence 0000000 000000 00
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
.....+.++|.||+..++.++|+.+|..+|.|..|++.....++..++||||.|.....+..|+..
T Consensus 181 --------------~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 181 --------------SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred --------------cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 000113445999999999999999999999999999999999999999999999999999999876
Q ss_pred hCCCccCCCcceEEEEEeccCC
Q 004060 435 INNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 435 l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
+...+.+ +.+.+....+
T Consensus 247 -~~~~~~~----~~~~~~~~~~ 263 (285)
T KOG4210|consen 247 -QTRSIGG----RPLRLEEDEP 263 (285)
T ss_pred -ccCcccC----cccccccCCC
Confidence 6666654 4444444444
No 117
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=9.9e-08 Score=103.99 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=65.6
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
.....+|+|-|||..+++++|..+|..||+|..|+.. -...+.+||+|.+..+|+.|++.|+...|.|+.|..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 3457789999999999999999999999999996654 446899999999999999999999999999998874
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.70 E-value=3.2e-08 Score=102.24 Aligned_cols=145 Identities=23% Similarity=0.308 Sum_probs=108.3
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccC----CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccc---
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQV----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC--- 268 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~----G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i--- 268 (776)
...|.+++||+++++.++.+||... |.+..|.+++. -.|+..|-|||.|...++|..||.+ |...|.-+-|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4457899999999999999999742 23445555543 3588899999999999999999985 3222222222
Q ss_pred ----------------------------------cccCCCCCCcccccCccccccHHHHHHHHhhcCCc-ceeEeEeeec
Q 004060 269 ----------------------------------GVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVD-NVEDLTLVED 313 (776)
Q Consensus 269 ----------------------------------~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~-~i~~i~l~~~ 313 (776)
.|..+....+|.+.+||+..+.++|..||..|-.. ....|.++.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~- 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL- 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE-
Confidence 12223446789999999999999999999988631 233344443
Q ss_pred CCCCCCcceEEEEeecchHHHHHHHHHHcCC
Q 004060 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (776)
Q Consensus 314 ~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~ 344 (776)
+..|+..|-|||+|.+.+.|..|....+++
T Consensus 318 -N~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 318 -NGQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -cCCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 578999999999999999999999877654
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.68 E-value=3e-08 Score=77.83 Aligned_cols=56 Identities=38% Similarity=0.703 Sum_probs=49.8
Q ss_pred HHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 213 L~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
|.++|++||+|..|.+.... .++|||+|.+.++|..|++.||+..|.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998542 689999999999999999999999999999998753
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=8.9e-09 Score=98.94 Aligned_cols=136 Identities=24% Similarity=0.307 Sum_probs=112.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..+||||.||-..++++-|.++|.+.|+|..|.|..++.. +.+ ||||.|.+.-....|+..+|+..+.++.|.|.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~--- 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT--- 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhcc---
Confidence 3567999999999999999999999999999999887553 334 99999999999999999999999999999874
Q ss_pred CCCcccccC----ccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcC
Q 004060 275 DSDTLFLGN----ICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (776)
Q Consensus 275 ~~~~l~V~n----Lp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (776)
++.++ |...++.+.+...|...+ .+..+++..+ ..++++.++|+.+....+.-.++.....
T Consensus 83 ----~r~G~shapld~r~~~ei~~~v~s~a~--p~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 83 ----LRCGNSHAPLDERVTEEILYEVFSQAG--PIEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred ----cccCCCcchhhhhcchhhheeeecccC--CCCCcccccc--ccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 56666 777788888999999988 5667776655 3478889999988777666666665443
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.65 E-value=8.9e-08 Score=103.20 Aligned_cols=70 Identities=24% Similarity=0.508 Sum_probs=66.3
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|+|.+|...|...+|+.||++||+|+-.+|+.+.-+.-.+.|+||+|.+.++|.+||..|+-++|.|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG 474 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG 474 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc
Confidence 4789999999999999999999999999999999998777789999999999999999999999999986
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.64 E-value=9.2e-08 Score=105.60 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=100.0
Q ss_pred ccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccC
Q 004060 281 LGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFAD 360 (776)
Q Consensus 281 V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~ 360 (776)
+++.+++....+++++|...- +..+.|..+. ....-.|.++|.|.....+.+|++.-.. +. ..+.+.+.-+.
T Consensus 316 ~~gm~fn~~~nd~rkfF~g~~---~~~~~l~~~~-v~~~~tG~~~v~f~~~~~~q~A~~rn~~--~~--~~R~~q~~P~g 387 (944)
T KOG4307|consen 316 YKGMEFNNDFNDGRKFFPGRN---AQSTDLSENR-VAPPQTGRKTVMFTPQAPFQNAFTRNPS--DD--VNRPFQTGPPG 387 (944)
T ss_pred ecccccccccchhhhhcCccc---ccccchhhhh-cCCCcCCceEEEecCcchHHHHHhcCch--hh--hhcceeecCCC
Confidence 355666777788888876442 4444443331 1222378999999999999999874211 11 12222222110
Q ss_pred --------CCCC-----------------------Cch---hhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeE-EEE
Q 004060 361 --------SFID-----------------------PGD---EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IEL 405 (776)
Q Consensus 361 --------~~~~-----------------------~~~---~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i 405 (776)
..+. ..+ .......+|||..||..++..++.++|...-.|+. |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 0000 000 11122479999999999999999999999888887 555
Q ss_pred eecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 406 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
.+ -.+++-++.|||.|..++++.+|+..-+...++ ...+.|
T Consensus 468 t~-~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G--~r~irv 508 (944)
T KOG4307|consen 468 TR-LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG--HRIIRV 508 (944)
T ss_pred cc-CCcccccchhhheeccccccchhhhcccccccC--ceEEEe
Confidence 44 457888999999999999988887644444443 344444
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.62 E-value=1.4e-08 Score=105.24 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=125.9
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCC---CCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT---KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~t---g~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
.|.|.||.+.+|.++|..||...|+|.++.|+.+... ......|||.|.+...+..|.. |.+++|-++.|.|.+..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 5899999999999999999999999999999874332 3355689999999998888876 78888877777765542
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
+. + -.... +|..++..+++.-.|..+ | |.|.+.... .+..+... ++ . .-+|
T Consensus 88 ~~--------~---~p~r~--af~~l~~~navprll~pd--------g---~Lp~~~~lt--~~nh~p~a-il-k-tP~L 138 (479)
T KOG4676|consen 88 DE--------V---IPDRF--AFVELADQNAVPRLLPPD--------G---VLPGDRPLT--KINHSPNA-IL-K-TPEL 138 (479)
T ss_pred CC--------C---CccHH--HHHhcCcccccccccCCC--------C---ccCCCCccc--cccCCccc-ee-c-CCCC
Confidence 11 1 11111 444333211111111111 0 111111000 00000000 00 0 0000
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
. .......+..-..+|+|++|+..+...+|.++|..+|.|....+.- +-..-+|.|+|........|+.
T Consensus 139 p------~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr- 207 (479)
T KOG4676|consen 139 P------PQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR- 207 (479)
T ss_pred C------hHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-
Confidence 0 0000111122237899999999999999999999999998777653 3446688899999999988876
Q ss_pred hCCCccC
Q 004060 435 INNAELG 441 (776)
Q Consensus 435 l~g~~~~ 441 (776)
++|..|.
T Consensus 208 ~~gre~k 214 (479)
T KOG4676|consen 208 SHGRERK 214 (479)
T ss_pred hcchhhh
Confidence 7787775
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.57 E-value=5.5e-08 Score=108.97 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=84.1
Q ss_pred HHHhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccc
Q 004060 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (776)
Q Consensus 189 ~~~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i 268 (776)
.+....-++||||++|+..+++.+|..+|+.||.|..|.++. +++||||++....+|.+||.+|++..+..+.|
T Consensus 414 pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~I 487 (894)
T KOG0132|consen 414 PDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTI 487 (894)
T ss_pred CcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceee
Confidence 344456688999999999999999999999999999999874 48999999999999999999999999999999
Q ss_pred cccCCCCC-----------CcccccCccccccHHHHHHHHh
Q 004060 269 GVTPSQDS-----------DTLFLGNICKTWTKEALKEKLK 298 (776)
Q Consensus 269 ~V~~a~~~-----------~~l~V~nLp~~~te~~L~~~F~ 298 (776)
+|.|+... ..|=|.-||+..-..+|+.++.
T Consensus 488 ki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 488 KIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred EEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 99998432 1233444565554455555544
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=7e-08 Score=109.92 Aligned_cols=160 Identities=18% Similarity=0.319 Sum_probs=126.9
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
.+.+||++||+.++++.+|+..|..+| .+..|.|... ..+.-..|+||.|.+...+-.|...+.+..|..+ .+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~g--kve~VDiKtP--~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g---~~ 443 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESG--KVEEVDIKTP--HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG---TH 443 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhc--cccccccccC--CCCcccchhhhhhhccccCcccchhhcCCccccC---cc
Confidence 457999999999999999999999999 5666666543 2345578999999999999999888887766433 22
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
++-+... ....++.|+|++|..++....|...|..||.|..|.+-.. .-||+|.|++...|+.|+..
T Consensus 444 r~glG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 444 RIGLGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccccccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHH
Confidence 2222211 2233488999999999999999999999999999888644 56999999999999999999
Q ss_pred hCCCccCCCcceEEEEEeccCC
Q 004060 435 INNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 435 l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
|-|..|++.... +++.++.+
T Consensus 511 ~rgap~G~P~~r--~rvdla~~ 530 (975)
T KOG0112|consen 511 MRGAPLGGPPRR--LRVDLASP 530 (975)
T ss_pred HhcCcCCCCCcc--cccccccC
Confidence 999999986655 55555543
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.54 E-value=1.1e-07 Score=91.35 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=71.4
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccC-CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQV-GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~-G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|..||..+.+..|..+|.+| |.|+.+++.+++.||+++|||||+|.+.+.|+-|...||+..|.++.|.|...
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4458999999999999999999998 78899999999999999999999999999999999999999999988876643
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.48 E-value=5.9e-07 Score=99.37 Aligned_cols=69 Identities=10% Similarity=0.207 Sum_probs=60.4
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+.|-+.|+|++++-+||.+||..|-.+-.-.+++-...|...|-|.|-|++.++|..|...|+++.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc
Confidence 378899999999999999999999776544444445689999999999999999999999999999975
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=9.8e-07 Score=95.59 Aligned_cols=144 Identities=22% Similarity=0.335 Sum_probs=104.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCC--CCCCcc---eEEEEeccHHHHHHHhhhccC----cee-
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ--TKKNKG---FAFLRFATVEQARQAVTELKN----PVI- 263 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~--tg~~~g---~afV~F~s~e~A~~Al~~l~~----~~l- 263 (776)
.-.++|||++||++++++.|...|..||.+..---.+... .-..+| |+|+.|.+...+...|.++.. ..|
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 3466799999999999999999999999865322211111 112455 999999999988887776532 111
Q ss_pred ------cCccccccC---------------CCCCCcccccCccccccHHHHHHHHh-hcCCcceeEeEeeecCCCCCCcc
Q 004060 264 ------NGKQCGVTP---------------SQDSDTLFLGNICKTWTKEALKEKLK-HYGVDNVEDLTLVEDSNNEGMNR 321 (776)
Q Consensus 264 ------~gr~i~V~~---------------a~~~~~l~V~nLp~~~te~~L~~~F~-~~G~~~i~~i~l~~~~~~~g~~k 321 (776)
..+.+.|.+ ..+.+||||++||.-++.++|..+|. -|| .|.-+.|=.| ..-+-++
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG--gV~yaGIDtD-~k~KYPk 413 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG--GVLYVGIDTD-PKLKYPK 413 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcC--ceEEEEeccC-cccCCCC
Confidence 222233321 15668999999999999999999998 888 4555544333 2445679
Q ss_pred eEEEEeecchHHHHHHHHH
Q 004060 322 GFAFLEFSSRSDAMDAFKR 340 (776)
Q Consensus 322 g~afV~F~s~e~A~~Al~~ 340 (776)
|.|-|+|.+...-.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999863
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=1.5e-08 Score=114.92 Aligned_cols=135 Identities=25% Similarity=0.348 Sum_probs=114.7
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..+++||.||+..+.+.+|...|..+|.|..+.|....+.++.+|+||+.|...+.|.+|+...... +.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh---------
Confidence 4456999999999999999999999999888888766778999999999999999999999965544 333
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCC
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~ 344 (776)
+..|+|.|+|+..|.+.|+.+|..+| ++..+.++. ...|+++|.|||.|.+..++.+++......
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~g--n~~~~~~vt--~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTG--NVTSLRLVT--VRAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccC--Cccccchhh--hhccccccceeccCCCcchhhhhcccchhh
Confidence 34789999999999999999999999 666666553 357899999999999999999988654433
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=1.6e-07 Score=107.07 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=131.5
Q ss_pred hccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 192 ~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
......|||++||...+++.+|+..|..+|.|..|.|.+. ..+.-..|+||.|.+...+-.|+..+.+..|..-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 4456778999999999999999999999999999998764 345667799999999999999998888877654444433
Q ss_pred ----CCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCcee
Q 004060 272 ----PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (776)
Q Consensus 272 ----~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~ 347 (776)
.+...+.+++++|..-+....|...|..|| .|..|.+-.. ..|++|++.+...+..|+..|.+..+-
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fG--pir~Idy~hg-------q~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFG--PIRIIDYRHG-------QPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHHHHHhhccC--cceeeecccC-------CcceeeecccCccchhhHHHHhcCcCC
Confidence 345678999999999999999999999999 4555555333 679999999999999999999888774
Q ss_pred cCCCCCceecccCCCCC
Q 004060 348 FGVDRPAKVSFADSFID 364 (776)
Q Consensus 348 ~~~~~~~~v~~a~~~~~ 364 (776)
-. .+.+.|.|+.....
T Consensus 518 ~P-~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 518 GP-PRRLRVDLASPPGA 533 (975)
T ss_pred CC-CcccccccccCCCC
Confidence 33 56688888866543
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.42 E-value=3.8e-07 Score=90.00 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=108.8
Q ss_pred cccccCccccccHHH-H--HHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 278 TLFLGNICKTWTKEA-L--KEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 278 ~l~V~nLp~~~te~~-L--~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
.+++.++-..+..+- | ...|..+- .+....++++ ..+...+++|+.|....+-.++...-+++.+. ..++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p--~L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~---~~~V 170 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYP--SLVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKKKIG---KPPV 170 (290)
T ss_pred cccccccccccCCCCCCcchhhhccch--hhhhhhhhhc--CCCccCcccccCcchhhhhhhhcccccccccc---Ccce
Confidence 344455443333322 1 34444333 2333444433 35566899999998777666665544444441 2224
Q ss_pred eecccCCCCCC-chhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 355 KVSFADSFIDP-GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 355 ~v~~a~~~~~~-~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
+..-......+ ..++.....+||.+.|..+++.+.|-..|.+|-.....+++++.-||+++||+||.|.+.+++..|+.
T Consensus 171 R~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 171 RLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred eeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 43333333222 12334445899999999999999999999999998899999999999999999999999999999999
Q ss_pred HhCCCccCC
Q 004060 434 SINNAELGE 442 (776)
Q Consensus 434 ~l~g~~~~g 442 (776)
.|||+.++.
T Consensus 251 em~gkyVgs 259 (290)
T KOG0226|consen 251 EMNGKYVGS 259 (290)
T ss_pred hhccccccc
Confidence 999999974
No 132
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.41 E-value=3.5e-07 Score=102.72 Aligned_cols=65 Identities=22% Similarity=0.462 Sum_probs=61.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
-++||||++|+..+++.+|..+|+.||.|..|.++.. +++|||++....+|.+|+.+|++..|..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccc
Confidence 3589999999999999999999999999999999866 8999999999999999999999999875
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=5.1e-07 Score=92.92 Aligned_cols=77 Identities=31% Similarity=0.536 Sum_probs=68.3
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhc-cCceecCcccccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVT 271 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l-~~~~l~gr~i~V~ 271 (776)
+..-.+|||++|-..+++.+|+.+|-+||+|..|.++.. +++|||+|.+.++|+.|..++ +.++|+|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345678999999999999999999999999999999864 569999999999999988876 7778899999999
Q ss_pred CCCC
Q 004060 272 PSQD 275 (776)
Q Consensus 272 ~a~~ 275 (776)
|...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 8765
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=9.1e-07 Score=91.08 Aligned_cols=74 Identities=31% Similarity=0.521 Sum_probs=62.4
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCc-cCCCcceEEEEE
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-LGEGDNKAKVRA 451 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~-~~g~~~~~~v~~ 451 (776)
-++|||++|...+++.+|+++|-+||.|..|.++.. +++|||+|.+..+|+.|...+-+.. |.| ..+.+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i 297 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING----FRLKI 297 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc----eEEEE
Confidence 479999999999999999999999999999999876 6799999999999999988665544 443 44555
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.|.++
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 57776
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=2.5e-07 Score=89.20 Aligned_cols=140 Identities=19% Similarity=0.282 Sum_probs=113.9
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
...++|||.|+...++++-|.++|-+.| .|..|.|.... .+..+ ||||.|.++....-|+..+++..+. +..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaG--PV~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~---~~e 78 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAG--PVYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLENGDDLE---EDE 78 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccC--ceEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcccchhc---cch
Confidence 3456999999999999999999999999 68888876553 34445 9999999999999999999988774 555
Q ss_pred ceecccCCCCCCchhhhhhhhccccCC----CCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDG----LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (776)
++ .+++-++ |...++.+.+...|+.-|.|..+++..+.. |+++.++||++....+.-
T Consensus 79 ~q------------------~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 79 EQ------------------RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred hh------------------cccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCc
Confidence 55 3455556 677788999999999999999999988864 888999999998877777
Q ss_pred HHHHHhCCCcc
Q 004060 430 TCAKSINNAEL 440 (776)
Q Consensus 430 ~A~~~l~g~~~ 440 (776)
.|+....+..+
T Consensus 140 ~~~~~y~~l~~ 150 (267)
T KOG4454|consen 140 FALDLYQGLEL 150 (267)
T ss_pred HHhhhhcccCc
Confidence 77776665544
No 136
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.33 E-value=1.1e-06 Score=86.02 Aligned_cols=75 Identities=19% Similarity=0.412 Sum_probs=64.9
Q ss_pred hccccCCCCCCChHHHHHH----HHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 374 KTVFVDGLPASWDEDRVRE----LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
.||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|+..|+|..|-|. .+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK----~m 82 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGK----PM 82 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCc----hh
Confidence 4999999999999999888 999999998887764 567899999999999999999999999999874 34
Q ss_pred EEeccC
Q 004060 450 RARLSR 455 (776)
Q Consensus 450 ~~~~~~ 455 (776)
++++++
T Consensus 83 riqyA~ 88 (221)
T KOG4206|consen 83 RIQYAK 88 (221)
T ss_pred heeccc
Confidence 444444
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.29 E-value=2.9e-06 Score=86.19 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=69.8
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
...+.+||+|+...+|.++|..+|+.||.|..|.|+.+..++.+++||||+|.+.+.++.|+. ||+..|.+..+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345899999999999999999999999999999999999999999999999999999999999 99999987544333
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.24 E-value=4.4e-06 Score=72.47 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=70.0
Q ss_pred hccccCCCCCCChHHHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+||.|+|||...|.++|.+++... |..-.+.|+.|..++.+.|||||.|.+++.|.+-.+.++|+.+..-.....+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998764 778889999999999999999999999999999999999999875444444455
Q ss_pred eccC
Q 004060 452 RLSR 455 (776)
Q Consensus 452 ~~~~ 455 (776)
.+++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5443
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.24 E-value=7.4e-06 Score=82.96 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=67.3
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
.+|.|.||+..|+..||+++|..||.+..+.|-.+ .+|.+.|.|-|.|...++|.+||+.+||..+.|..+.+.+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 78999999999999999999999998888888777 4899999999999999999999999999888886544444
No 140
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.17 E-value=3.5e-06 Score=87.79 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=71.0
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
...+|||.+|+..++.++|.++|.+||.|. .|+|-+++.|+++|+-|.|+|++...|++||..++++.|.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g- 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG- 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC-
Confidence 347899999999999999999999999885 47788999999999999999999999999999999999997
Q ss_pred cceEEEEEeccC
Q 004060 444 DNKAKVRARLSR 455 (776)
Q Consensus 444 ~~~~~v~~~~~~ 455 (776)
..++|.++..+
T Consensus 144 -n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 -NTIKVSLAERR 154 (351)
T ss_pred -CCchhhhhhhc
Confidence 33444444333
No 141
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.14 E-value=2.5e-05 Score=80.19 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=65.2
Q ss_pred hccccCCCCCCChHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
.|+||+||-|++|.+||.+.+...| .|..+++..++.+|++||||+|...+.++.++.++.|--++|.|..-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 6899999999999999999988776 46778889999999999999999999999999999999999988543
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.05 E-value=5.4e-06 Score=84.26 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=75.8
Q ss_pred HhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 191 ~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
+...+...|||+|+.+.+|.++|..+|+.||.|..|.|..+..++++++||||+|.+.+.+..+++ |++..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445667789999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred cCC
Q 004060 271 TPS 273 (776)
Q Consensus 271 ~~a 273 (776)
.+.
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 654
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.02 E-value=9.5e-06 Score=82.18 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=70.6
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|.|.|||..++.+||++||..||.++.+.|-.+ .+|.+.|+|-|.|...++|..|++.+|+..++|+.|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34577999999999999999999999998887777765 46899999999999999999999999999999999887654
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.97 E-value=2.5e-05 Score=67.83 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=61.0
Q ss_pred ceEEEcCCCcCCcHHHHHHhhcc--CCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceec
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQ--VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~--~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~ 264 (776)
+||+|+|||...|.+.|.+++.. .|...-+-+..|..++.+.|||||.|.+.+.|.+..+.+++..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999988865 367788889999999999999999999999999999998887664
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=3.8e-06 Score=91.93 Aligned_cols=70 Identities=29% Similarity=0.383 Sum_probs=62.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcce
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (776)
+..+|+|-|||..|+.++|..+|+.||+|..|..-.. ..+.+||+|.+..+|+.|++.||+.+|.+..++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3489999999999999999999999999999776544 388999999999999999999999999875543
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.94 E-value=8.8e-06 Score=80.54 Aligned_cols=152 Identities=20% Similarity=0.342 Sum_probs=114.0
Q ss_pred eEEEcCCCcCCcHHH-H--HHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc----
Q 004060 198 EVFVGGLDKDVVGDD-L--RKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV---- 270 (776)
Q Consensus 198 tlfV~nLp~~~te~d-L--~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V---- 270 (776)
.+|+.++-..+..+- | ...|..+-.+...+++.+. .+...+++|+.|.....-.++-..-++..+.-..|++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 356666665555444 3 5667777666666666653 3667899999999877777776655555554444433
Q ss_pred --------cCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHc
Q 004060 271 --------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (776)
Q Consensus 271 --------~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~ 342 (776)
+|..+..+||++.|...++.+-|...|.+|- .+...+++++ ..+++++||+||.|.+..++..|++.++
T Consensus 177 swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfp--sf~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 177 SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFP--SFQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred ccCCcccccCccccceeecccccccccHHHHHHHHHhcc--chhhcccccc-ccccccccceeeeecCHHHHHHHHHhhc
Confidence 2335567899999999999999999999998 6777888887 5799999999999999999999999999
Q ss_pred CCceecCCCCCcee
Q 004060 343 KRDVLFGVDRPAKV 356 (776)
Q Consensus 343 ~~~i~~~~~~~~~v 356 (776)
++.+. .++|++
T Consensus 254 gkyVg---srpikl 264 (290)
T KOG0226|consen 254 GKYVG---SRPIKL 264 (290)
T ss_pred ccccc---cchhHh
Confidence 98773 455443
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.91 E-value=1.2e-05 Score=88.02 Aligned_cols=75 Identities=25% Similarity=0.442 Sum_probs=61.4
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
..+|||.|||.+++...|+++|..||.|+...|..-.-.++..+||||+|.+.++++.||.+ +...|.+++|.|.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 44599999999999999999999999999988876543345559999999999999999996 3555666666543
No 148
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.88 E-value=1.1e-05 Score=80.01 Aligned_cols=74 Identities=26% Similarity=0.293 Sum_probs=63.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCC--------CCCcc----eEEEEeccHHHHHHHhhhccCce
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT--------KKNKG----FAFLRFATVEQARQAVTELKNPV 262 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~t--------g~~~g----~afV~F~s~e~A~~Al~~l~~~~ 262 (776)
+...|||++||+.+....|+++|+.||.|-.|.|.....+ +.+.. -+||+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6677999999999999999999999999999998876544 22222 38999999999999999999999
Q ss_pred ecCccc
Q 004060 263 INGKQC 268 (776)
Q Consensus 263 l~gr~i 268 (776)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988763
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.86 E-value=6.9e-06 Score=86.28 Aligned_cols=147 Identities=17% Similarity=0.283 Sum_probs=112.3
Q ss_pred CcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCcee
Q 004060 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (776)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v 356 (776)
+.||++||...++..+|..+|..... ....-.|+. .+|+||...+...|.+|+..|+++.-+ .++.+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceeee--------cceeeccCCchhhhhhhHHhhchhhhh--cCceeec
Confidence 37899999999999999999986642 222223322 789999999999999999998887554 3566655
Q ss_pred cccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhC
Q 004060 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (776)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (776)
...-+.. ...+.+-|.|+|....|+.|..|+..||.|.+|..+.. ..-....-|+|.+.+.++.||.+||
T Consensus 71 ~~sv~kk-------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 71 EHSVPKK-------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred cchhhHH-------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5443321 22367999999999999999999999999999876432 1123345678899999999999999
Q ss_pred CCccCCCc
Q 004060 437 NAELGEGD 444 (776)
Q Consensus 437 g~~~~g~~ 444 (776)
|..|....
T Consensus 141 g~Q~en~~ 148 (584)
T KOG2193|consen 141 GPQLENQH 148 (584)
T ss_pred chHhhhhh
Confidence 99997633
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.80 E-value=2e-05 Score=82.19 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=75.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceE--------EEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--------EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
....+|||.+||..+++++|..+|.+|+.|. .|+|.+++.|+..++-|.|.|.+...|+.|+..+++..|++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456799999999999999999999999874 47788999999999999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 004060 266 KQCGVTPSQDSD 277 (776)
Q Consensus 266 r~i~V~~a~~~~ 277 (776)
..|+|.++...+
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999988775444
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.79 E-value=2.9e-05 Score=86.79 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=69.5
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecC---CCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcce
Q 004060 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM---PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (776)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (776)
...++.|||+||++.++++.|...|..||.|..|+|+..+ ...+.+.++||-|-+..+|++|++.|+|..+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~---- 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME---- 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee----
Confidence 3456899999999999999999999999999999998554 235568899999999999999999999999865
Q ss_pred EEEEEeccC
Q 004060 447 AKVRARLSR 455 (776)
Q Consensus 447 ~~v~~~~~~ 455 (776)
..+++.|.+
T Consensus 247 ~e~K~gWgk 255 (877)
T KOG0151|consen 247 YEMKLGWGK 255 (877)
T ss_pred eeeeecccc
Confidence 455555554
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.77 E-value=7.6e-05 Score=61.62 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=48.1
Q ss_pred ceEEEcCCCcCCcHHH----HHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 197 FEVFVGGLDKDVVGDD----LRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 197 ~tlfV~nLp~~~te~d----L~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
..|+|.|||.+..... |++++..|| .|..|. .+.|+|.|.+.+.|.+|++.|++..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4599999999887665 566777887 566552 4679999999999999999999999999999998
Q ss_pred CCCCC
Q 004060 272 PSQDS 276 (776)
Q Consensus 272 ~a~~~ 276 (776)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87444
No 153
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.75 E-value=7.1e-05 Score=77.38 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=66.6
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
+.|||.|||.++|.+++.++|++||.|. .|+|.++. .|+.+|-|+|.|--.+++.-|++.|++..|.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg--- 210 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG--- 210 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC---
Confidence 5699999999999999999999999885 47777775 49999999999999999999999999999975
Q ss_pred eEEEEEeccC
Q 004060 446 KAKVRARLSR 455 (776)
Q Consensus 446 ~~~v~~~~~~ 455 (776)
+.++|+.++
T Consensus 211 -~~~rVerAk 219 (382)
T KOG1548|consen 211 -KKLRVERAK 219 (382)
T ss_pred -cEEEEehhh
Confidence 445555443
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.73 E-value=4.1e-05 Score=68.11 Aligned_cols=59 Identities=22% Similarity=0.458 Sum_probs=40.4
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 438 (776)
..|+|.+|+..++.++|+++|++||.|..|.+... ...|||.|.+.++|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 56889999999999999999999999999999865 558999999999999999977655
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.59 E-value=0.00011 Score=82.36 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=68.7
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCC---CCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ---TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~---tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
..++|||+||++.++++.|...|..||+|..|+|+-... ....+.|+||.|-+..+|.+|++.|++..+.+..+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 355699999999999999999999999999999986432 24567899999999999999999999999988877776
Q ss_pred CC
Q 004060 272 PS 273 (776)
Q Consensus 272 ~a 273 (776)
|.
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 65
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.58 E-value=0.00021 Score=59.04 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=43.1
Q ss_pred hccccCCCCCCChHH----HHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 374 KTVFVDGLPASWDED----RVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~----~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..|+|.|||.+.+.. -|++++..|| +|..|. .+.|+|.|.+++.|..|++.|+|..+.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccce
Confidence 468999999987764 6778888885 565552 579999999999999999999999988743
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.54 E-value=0.002 Score=68.76 Aligned_cols=69 Identities=16% Similarity=0.365 Sum_probs=58.0
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeec---CCCCC----------cccEEEEEeCchHHHHHHHHHhCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN---MPSAK----------RKDFGFVTFDTHDAAVTCAKSINN 437 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~---~~~g~----------~~g~afV~F~~~~~A~~A~~~l~g 437 (776)
.+.++|.+.|||.+-.-+.|.+||..||.|..|+|... +.+.+ .+-+|||+|+....|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45689999999999888999999999999999999876 33221 256799999999999999998865
Q ss_pred Cc
Q 004060 438 AE 439 (776)
Q Consensus 438 ~~ 439 (776)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 44
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00056 Score=74.92 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=59.2
Q ss_pred hccccCCCCCCCh------HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWD------EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t------~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.+|+|.|+|.--. ..-|..+|+++|+|+++.++.+..+| .+||.|++|.+..+|+.|++.|||+.|.-
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 6889999986522 34677899999999999999887666 89999999999999999999999999974
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.26 E-value=6.8e-05 Score=79.01 Aligned_cols=146 Identities=23% Similarity=0.364 Sum_probs=109.8
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCc-eecCccccccCCC--
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VINGKQCGVTPSQ-- 274 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~-~l~gr~i~V~~a~-- 274 (776)
.++|+||...++..+|..+|...-.-..-.++ ...+|+||.+.+...|.+|++.|++. .+.|+.+.|..+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 48999999999999999999764211111111 12679999999999999999999875 6889999987763
Q ss_pred --CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCC
Q 004060 275 --DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (776)
Q Consensus 275 --~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (776)
.++.+-|.|+|....|+-|-.++..+| .+..|..+... .-.-..-|+|.+.+.+..|+..|++..+. ..
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt~----~etavvnvty~~~~~~~~ai~kl~g~Q~e---n~ 147 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNTD----SETAVVNVTYSAQQQHRQAIHKLNGPQLE---NQ 147 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhccc----hHHHHHHHHHHHHHHHHHHHHhhcchHhh---hh
Confidence 346799999999999999999999999 56666554321 11223347888999999999999887764 34
Q ss_pred Cceecc
Q 004060 353 PAKVSF 358 (776)
Q Consensus 353 ~~~v~~ 358 (776)
.+++.+
T Consensus 148 ~~k~~Y 153 (584)
T KOG2193|consen 148 HLKVGY 153 (584)
T ss_pred hhhccc
Confidence 444443
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.15 E-value=0.00036 Score=71.89 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=70.6
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCC--ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G--~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
.-...++||+||-|.+|.++|.+.+...| .|.+++++.+..+|+++|||+|...+..+.++.+..|-..+|.|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34566799999999999999999998877 5788999999999999999999999999999999999988898887666
Q ss_pred cC
Q 004060 271 TP 272 (776)
Q Consensus 271 ~~ 272 (776)
..
T Consensus 157 ~~ 158 (498)
T KOG4849|consen 157 LS 158 (498)
T ss_pred ec
Confidence 54
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.00 E-value=0.00093 Score=59.46 Aligned_cols=59 Identities=31% Similarity=0.465 Sum_probs=39.5
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCc
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~ 261 (776)
+.|+|.+++..++-++|+++|.+||.|..|.+... ...|||.|.+.+.|++|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 56899999999999999999999999999988753 336999999999999999987543
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.99 E-value=0.001 Score=51.22 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=41.9
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHH
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
+.|-|.+.+.... +.|..+|..||.|+.+.+... ..++||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4577888887655 445558889999999988732 569999999999999985
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.93 E-value=0.00047 Score=68.74 Aligned_cols=71 Identities=28% Similarity=0.467 Sum_probs=61.1
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCC--------CCcc----cEEEEEeCchHHHHHHHHHhCCCccC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS--------AKRK----DFGFVTFDTHDAAVTCAKSINNAELG 441 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~--------g~~~----g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (776)
-.||+.+||+.+....|++||..||.|-.|.|.....+ |.++ --|+|+|.+...|..+...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999999876544 2222 23789999999999999999999998
Q ss_pred CCc
Q 004060 442 EGD 444 (776)
Q Consensus 442 g~~ 444 (776)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 743
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.77 E-value=0.0018 Score=66.72 Aligned_cols=77 Identities=17% Similarity=0.367 Sum_probs=59.3
Q ss_pred ceEEEcCCCcCCcHHH------HHHhhccCCceEEEEEeecCCCC-CCcce--EEEEeccHHHHHHHhhhccCceecCcc
Q 004060 197 FEVFVGGLDKDVVGDD------LRKVFSQVGEVTEVRLMMNPQTK-KNKGF--AFLRFATVEQARQAVTELKNPVINGKQ 267 (776)
Q Consensus 197 ~tlfV~nLp~~~te~d------L~~~f~~~G~i~~v~i~~d~~tg-~~~g~--afV~F~s~e~A~~Al~~l~~~~l~gr~ 267 (776)
.-|||-+||+.+..++ -.++|.+||.|..|.|-+...+. ...+. .||+|.+.++|..||..+++..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3489999998876665 24789999999988776433111 12222 499999999999999999999999999
Q ss_pred ccccCC
Q 004060 268 CGVTPS 273 (776)
Q Consensus 268 i~V~~a 273 (776)
|+...-
T Consensus 195 lkatYG 200 (480)
T COG5175 195 LKATYG 200 (480)
T ss_pred EeeecC
Confidence 988654
No 165
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.66 E-value=0.0058 Score=67.67 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=59.4
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhcc-CCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCcee---cCccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQ-VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI---NGKQC 268 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~-~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l---~gr~i 268 (776)
......|+|.||-.-+|.-+|+.|+.. +|.|+.. ++|+ -+..|||.|.+.++|.+...+|||..| +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345667999999999999999999984 6666665 4443 356799999999999999999999866 55666
Q ss_pred cccCC
Q 004060 269 GVTPS 273 (776)
Q Consensus 269 ~V~~a 273 (776)
.|.+.
T Consensus 515 ~adf~ 519 (718)
T KOG2416|consen 515 IADFV 519 (718)
T ss_pred Eeeec
Confidence 66554
No 166
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.64 E-value=0.0013 Score=69.30 Aligned_cols=78 Identities=29% Similarity=0.545 Sum_probs=70.7
Q ss_pred cceEE-EcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 196 EFEVF-VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 196 ~~tlf-V~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++| |.+|++.++.++|+.+|..+|.|+.+++..+..++..++||||.|.+...+..++.. +...+.++.+.|....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 33455 999999999999999999999999999999999999999999999999999999987 7888888888887653
No 167
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=96.57 E-value=0.0049 Score=72.23 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=25.4
Q ss_pred CCCcceEEEEeccHHHHHHHhhhccCceec
Q 004060 235 KKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (776)
Q Consensus 235 g~~~g~afV~F~s~e~A~~Al~~l~~~~l~ 264 (776)
-..+||.||+-....+.+.||+-+-+..++
T Consensus 207 D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 207 DHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cccceeEEEEechhHHHHHHHhhhhhheec
Confidence 457999999999999999999988766555
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0042 Score=68.34 Aligned_cols=75 Identities=24% Similarity=0.355 Sum_probs=59.8
Q ss_pred CcceEEEcCCCcCC--c----HHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC-cc
Q 004060 195 KEFEVFVGGLDKDV--V----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQ 267 (776)
Q Consensus 195 ~~~tlfV~nLp~~~--t----e~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g-r~ 267 (776)
....|+|.|+|.-- . ..-|..+|+++|+|+.+.+..+..+| ++||.|++|.+..+|+.|++.|||..|.- ++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34569999999432 2 34477899999999999998876655 99999999999999999999999987753 44
Q ss_pred ccc
Q 004060 268 CGV 270 (776)
Q Consensus 268 i~V 270 (776)
+.|
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 443
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0053 Score=61.46 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCceecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCC
Q 004060 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411 (776)
Q Consensus 332 e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~ 411 (776)
.-|..|-..|.+... .++.+.|.|+.. ..|+|.||...++.+.|...|..||.|....++.| ..
T Consensus 5 t~ae~ak~eLd~~~~---~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP---KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DR 68 (275)
T ss_pred cHHHHHHHhcCCCCC---CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cc
Confidence 446666666766654 488999998865 68999999999999999999999999987766655 36
Q ss_pred CCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 412 g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
++..+-++|+|...-.|.+|+..++-.-|.+
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 7889999999999999999999886655544
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.37 E-value=0.008 Score=46.28 Aligned_cols=52 Identities=19% Similarity=0.455 Sum_probs=42.2
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHh
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al 255 (776)
+.|-|.+.+....+.-| .+|.+||+|+.+.+. ....+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 46889999977765544 588899999998875 23568999999999999986
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.29 E-value=0.011 Score=51.82 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=46.8
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEE-EeecC------CCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIE-LARNM------PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-i~~~~------~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.|.|-+.|.. ....|.+.|++||.|.... +.++. .......+..|+|.++.+|++||. .||..|.|.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 56788889888 5567888999999997774 10000 011236799999999999999987 899999764
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.26 E-value=0.0061 Score=62.87 Aligned_cols=75 Identities=24% Similarity=0.465 Sum_probs=56.4
Q ss_pred hccccCCCCCCChHHH----H--HHHHhhcCCeeEEEEeecCCCCCc-ccE--EEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 374 KTVFVDGLPASWDEDR----V--RELLKNYGEITKIELARNMPSAKR-KDF--GFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~----L--~~~F~~~G~v~~v~i~~~~~~g~~-~g~--afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
+-|||-+|+..+-.++ | .++|.+||+|..|.|-+......+ .+. .||+|.+.++|..||..++|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 6789999998876655 2 478999999998887654322111 122 399999999999999999999999855
Q ss_pred ceEE
Q 004060 445 NKAK 448 (776)
Q Consensus 445 ~~~~ 448 (776)
+++.
T Consensus 195 lkat 198 (480)
T COG5175 195 LKAT 198 (480)
T ss_pred Eeee
Confidence 4433
No 173
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.12 E-value=0.025 Score=66.02 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=13.1
Q ss_pred CCcceEEEEeccHHHHHHHhh
Q 004060 236 KNKGFAFLRFATVEQARQAVT 256 (776)
Q Consensus 236 ~~~g~afV~F~s~e~A~~Al~ 256 (776)
.++.|+-|-|.+..--..++.
T Consensus 468 ~prpyg~i~fctvgvllr~~e 488 (1282)
T KOG0921|consen 468 TPRPYGSIMFCTVGVLLRMME 488 (1282)
T ss_pred ccccccceeeeccchhhhhhh
Confidence 345566666777666666655
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.03 E-value=0.0053 Score=64.69 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=56.5
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..|.|.||.+++|.+++..||...|+|..+.|+.+... ....-.|||.|.+...+..|.. |.++.|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence 47899999999999999999999999999998764322 3446789999999999999955 77776654
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.73 E-value=0.013 Score=58.82 Aligned_cols=92 Identities=20% Similarity=0.310 Sum_probs=77.4
Q ss_pred HHHHHhhhccCceecCccccccCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeec
Q 004060 250 QARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS 329 (776)
Q Consensus 250 ~A~~Al~~l~~~~l~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~ 329 (776)
-|..|...|++....++.+.|.++.. ..|+|.||..-+..+.|.+.|..|| .|....++.+ ..++..+-++|.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg--~~e~av~~vD--~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFG--PIERAVAKVD--DRGKPTREGIVEFA 80 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcC--ccchheeeec--ccccccccchhhhh
Confidence 46667777999999999999999988 8999999999999999999999999 5555555544 45778899999999
Q ss_pred chHHHHHHHHHHcCCce
Q 004060 330 SRSDAMDAFKRLQKRDV 346 (776)
Q Consensus 330 s~e~A~~Al~~l~~~~i 346 (776)
..-.|.+|+..+....+
T Consensus 81 ~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 81 KKPNARKAARRCREGGF 97 (275)
T ss_pred cchhHHHHHHHhccCcc
Confidence 99999999987754433
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.60 E-value=0.011 Score=63.16 Aligned_cols=66 Identities=26% Similarity=0.387 Sum_probs=55.8
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeec---CCCC--C--------CcceEEEEeccHHHHHHHhhhccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN---PQTK--K--------NKGFAFLRFATVEQARQAVTELKN 260 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d---~~tg--~--------~~g~afV~F~s~e~A~~Al~~l~~ 260 (776)
..++|.+.|||.+-..+.|.+||..||.|..|+|+.. +... . .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5778999999999999999999999999999999976 2221 1 255799999999999999997653
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.56 E-value=0.029 Score=57.12 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCC-cccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 387 EDRVRELLKNYGEITKIELARNMPSAK-RKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 387 ~~~L~~~F~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+++++..+.+||.|.+|.|...+..-. -.--.||+|...+.|.+|+-.|||+.|+|.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 457889999999999998876642211 133579999999999999999999999874
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.11 E-value=0.013 Score=65.14 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=58.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
.++.|+|.||-.-+|.-+|+.++. .+|.|+.++|-+- +-.|||.|.+.++|.+.+.+|||..+-.++-++
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 458999999999999999999998 5777777754332 779999999999999999999999876544433
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.11 E-value=0.074 Score=46.67 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=48.4
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecC-------CCCCCcceEEEEeccHHHHHHHhhhccCceecCccc
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-------QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~-------~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i 268 (776)
...|.|=+.|.. ....|..+|++||.|++..-+... ..........|+|.+..+|.+||. .|+.+|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 455888889988 556788899999999887511000 001235689999999999999999 58888887544
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.97 E-value=0.064 Score=49.95 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 388 DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 388 ~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.+|.+.|..||.|+-|+++. +.-+|+|.+-..|.+|+. |+|.+|.|
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEECC
Confidence 47888899999999888873 478999999999999987 99999987
No 181
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.31 Score=54.54 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=65.8
Q ss_pred CcceEEEcCCCcC-CcHHHHHHhhccC----CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 195 KEFEVFVGGLDKD-VVGDDLRKVFSQV----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 195 ~~~tlfV~nLp~~-~te~dL~~~f~~~----G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
....|-|.||.|+ +...+|..+|+.| |.|+.|.|.... |- ...|..-.+.|-.+.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FG--------keRM~eEeV~GP~~e 232 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FG--------KERMKEEEVHGPPKE 232 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hh--------HHHhhhhcccCChhh
Confidence 4456999999997 7889999999877 589999987531 11 112222333443322
Q ss_pred ccCC-CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCcee
Q 004060 270 VTPS-QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (776)
Q Consensus 270 V~~a-~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~ 347 (776)
+... .....- ...+...+.-....+.+|+ +..++ --||.|+|.+...|......+.|..+.
T Consensus 233 l~~~~e~~~~s---~sD~ee~~~~~~~kLR~Yq---~~rLk-----------YYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 233 LFKPVEEYKES---ESDDEEEEDVDREKLRQYQ---LNRLK-----------YYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hccccccCccc---ccchhhhhhHHHHHHHHHH---hhhhe-----------eEEEEEEecCchHHHHHHHhcCcceec
Confidence 2111 000000 0001111112244444444 11222 457999999999999999998887764
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.87 E-value=0.016 Score=58.37 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=47.9
Q ss_pred HHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 388 DRVRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 388 ~~L~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
++|...|. +||+|+.+.|..+. .-.-.|-++|.|...++|++|+..|||..|.|..+.+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 56666666 89999999776553 234478899999999999999999999999985544443
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.30 E-value=0.1 Score=43.53 Aligned_cols=54 Identities=17% Similarity=0.479 Sum_probs=40.6
Q ss_pred ccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC
Q 004060 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (776)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (776)
..+|. +|..+...||.++|+.||.|. |..+.+ .-|||.....+.|..|+..++-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 34454 999999999999999999984 444443 4999999999999999988764
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.24 E-value=0.09 Score=53.66 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=52.0
Q ss_pred HHHHHHhhccCCceEEEEEeecCCCCC-CcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 210 GDDLRKVFSQVGEVTEVRLMMNPQTKK-NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 210 e~dL~~~f~~~G~i~~v~i~~d~~tg~-~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
+.++++.+.+||.|..|.|+..+.... -.--.||+|...+.|.+|+-.||+..|.|+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 467889999999999999987654322 233489999999999999999999999999987654
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.80 E-value=0.021 Score=57.43 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=50.8
Q ss_pred HHHHHhhc-cCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 211 DDLRKVFS-QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 211 ~dL~~~f~-~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
++|...|. +||+|.+++|..+.. -...|-+||.|...++|++|+..||+.-|.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 899999998876533 456788999999999999999999999999999876654
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.48 E-value=0.15 Score=56.42 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=71.6
Q ss_pred HHHHHHHhhhccCceecCccccccCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEe
Q 004060 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327 (776)
Q Consensus 248 ~e~A~~Al~~l~~~~l~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~ 327 (776)
.+-...+|+.+-+..++.+-++|.+....+.|+|..|+.+.-.++|+.||+.-....+..|.+..+ .-.||+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyIT 218 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYIT 218 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEE
Confidence 444556777777888888999999999999999999999999999999998755457778877654 237999
Q ss_pred ecchHHHHHHHHHHc
Q 004060 328 FSSRSDAMDAFKRLQ 342 (776)
Q Consensus 328 F~s~e~A~~Al~~l~ 342 (776)
|.+..+|..|++.|.
T Consensus 219 fesd~DAQqAykylr 233 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLR 233 (684)
T ss_pred eecchhHHHHHHHHH
Confidence 999999999988654
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.96 E-value=0.3 Score=38.65 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=43.3
Q ss_pred hccccCCCCCCChHHHHHHHHhhc---CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHh
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNY---GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 435 (776)
..|+|.++. +++.++|+.+|..| .....|..+.|. -|=|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 678999985 47778999999998 124467776653 7899999999999999765
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.54 E-value=0.19 Score=46.81 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=50.9
Q ss_pred CcceEEEcCCCc------CCc---HHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 195 KEFEVFVGGLDK------DVV---GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 195 ~~~tlfV~nLp~------~~t---e~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
...||.|.=+.. ... -.+|.+.|.+||.|+=|+++.+ .-+|+|.+-+.|.+|+. +++..++|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 455666665541 122 2367788999999888887743 58999999999999999 89999999
Q ss_pred ccccccCC
Q 004060 266 KQCGVTPS 273 (776)
Q Consensus 266 r~i~V~~a 273 (776)
+.|.|...
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 99988653
No 189
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.97 E-value=0.2 Score=61.27 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=9.9
Q ss_pred CcHHHHHHhhccCC
Q 004060 208 VVGDDLRKVFSQVG 221 (776)
Q Consensus 208 ~te~dL~~~f~~~G 221 (776)
.+.++|.+++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 46677888887664
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.54 E-value=0.66 Score=36.77 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=42.0
Q ss_pred eEEEcCCCcCCcHHHHHHhhccC---CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhc
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQV---GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~---G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l 258 (776)
+|+|.++. +++.++|+.+|..| .....|..+-|. .|-|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 49999985 57888999999998 134567766553 3889999999999999864
No 191
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.41 E-value=0.12 Score=56.42 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred hccccCCCCCC-ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 374 KTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 374 ~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
+.|-+.-.|.. -+-.+|...|.+||.|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|++.-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~ 437 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRF 437 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCce
Confidence 55566666666 356899999999999999988655 4589999999999977754 7788887633
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.25 E-value=0.89 Score=40.72 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=51.2
Q ss_pred hccccCCCCCCChHHHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNY-GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..+.+...|..++-++|..+...+ ..|..++|+++. ..++-.++|+|.+.++|..-....||+.|.-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 445555566667777787777666 457788888873 2356679999999999999999999998864
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.23 E-value=0.3 Score=47.88 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=47.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhcc-CCce---EEEEEeecCCC--CCCcceEEEEeccHHHHHHHhhhccCceecCcc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQ-VGEV---TEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~-~G~i---~~v~i~~d~~t--g~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~ 267 (776)
...+|.|++||+.+|++++.+.+.. ++.. ..+.-...... .....-|||.|.+.+++...+..+++..|....
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3457999999999999999998776 6655 33331122111 123345999999999999999999998775544
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.94 E-value=0.37 Score=53.54 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=59.7
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhcc--CCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccC--ceecCccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQ--VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQC 268 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~--~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~--~~l~gr~i 268 (776)
..+.|.|+|+.||..+-.++|+.||.. |-+++.|.+..+.. =||+|.+..+|+.|.+.|.. .+|.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 356788999999999999999999976 77889998875432 69999999999999998853 47888887
Q ss_pred ccc
Q 004060 269 GVT 271 (776)
Q Consensus 269 ~V~ 271 (776)
...
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 653
No 195
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.67 E-value=1 Score=53.23 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCCCCcccCCCCC
Q 004060 735 SYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMGSGGS 772 (776)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (776)
.-|+-|-.+| |.+-+.+ ||-|++.|.++++-
T Consensus 1245 npgggyrgsG---Gfgrggg----rgagggGgfg~G~~ 1275 (1282)
T KOG0921|consen 1245 NPGGGYRGSG---GFGRGGG----RGAGGGGGFGGGGR 1275 (1282)
T ss_pred CCCCCccCCC---CcCCCCC----CCCCCCCCCCCCCc
Confidence 5555564444 3333333 45555566664433
No 196
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.71 E-value=3.2 Score=49.33 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=37.6
Q ss_pred CChHHHHHHHHhhcCC-----eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 384 SWDEDRVRELLKNYGE-----ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 384 ~~t~~~L~~~F~~~G~-----v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
.++..+|..++..-+. |-.|.|.. .|.||+.... .|...+..|++..+.+..+
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~ 555 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPKG-MPGEVLQHFTRTRILNKPM 555 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcChh-hHHHHHHHhccccccCCce
Confidence 4777777777766543 44677764 4999998654 4777888899999987543
No 197
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.26 E-value=1.1 Score=52.09 Aligned_cols=14 Identities=0% Similarity=0.159 Sum_probs=8.0
Q ss_pred ccHHHHHHHhhhcc
Q 004060 246 ATVEQARQAVTELK 259 (776)
Q Consensus 246 ~s~e~A~~Al~~l~ 259 (776)
.+...+.+|++++-
T Consensus 207 k~~~eiIrClka~m 220 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFM 220 (1102)
T ss_pred HHHHHHHHHHHHHh
Confidence 34556666666653
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.07 E-value=1.2 Score=37.25 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=39.5
Q ss_pred EEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~ 259 (776)
||--.+|..+...||.++|+.||.|.--- +- -..|||.+...+.|..++..++
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsW-i~-------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSW-IN-------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEE-EC-------TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEE-Ec-------CCcEEEEeecHHHHHHHHHHhc
Confidence 55555999999999999999999987443 32 2369999999999999988765
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.65 E-value=0.25 Score=56.20 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=62.6
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
....+|||+||...+..+-++.++..||.|..++.+. |+|..|.....+..|+..|+...++++.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567899999999999999999999999998877653 899999999999999999999999888887765
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.24 E-value=0.87 Score=47.06 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=48.1
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.-|-|.+++... -.-|..+|.+||.|+..... .+-.|.+|.|.+.-+|++||. -||+.|.+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeecc
Confidence 446667777653 35688899999999777654 236799999999999999987 78888876
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.23 E-value=0.53 Score=46.13 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=47.0
Q ss_pred hccccCCCCCCChHHHHHHHHhh-cCCe---eEEEEeecCCC--CCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKN-YGEI---TKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
.+|.|++||+.+|+++++..+.. ++.. ..+.-...... .....-|||.|.+.+++..-+..++|+.|...
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 68999999999999999997776 5655 23331122111 11234699999999999999999999887653
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.79 E-value=16 Score=38.14 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=48.0
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecC-------CCCCCcceEEEEeccHHHHHHHhh
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-------QTKKNKGFAFLRFATVEQARQAVT 256 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~-------~tg~~~g~afV~F~s~e~A~~Al~ 256 (776)
.+.|.+.||...++-..+...|.+||+|..|.++.+. ...+......+.|-+.+.|.....
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 3458899999999999999999999999999999765 112345678888888877655433
No 203
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.73 E-value=0.38 Score=54.80 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=60.2
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
.+..+|||+||...+..+-++.++..||.|..+..+. |+|++|..+..+..|+..|+-..+++......+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3457999999999999999999999999988776542 999999999999999999999988875555444
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.20 E-value=0.26 Score=53.75 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=60.7
Q ss_pred CcceEEEcCCCcCC-cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDV-VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~-te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
+.+.|-|..+|+.+ +-.+|..+|.+||.|..|.|-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|-|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 45557777777764 56889999999999999987543 3459999999999977776 6899999999998877
Q ss_pred CCCC
Q 004060 274 QDSD 277 (776)
Q Consensus 274 ~~~~ 277 (776)
.++.
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 6554
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.10 E-value=0.44 Score=50.21 Aligned_cols=76 Identities=17% Similarity=0.346 Sum_probs=58.8
Q ss_pred eEEEcCCCcCCcHHHHH---HhhccCCceEEEEEeecCC--C-CCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 198 EVFVGGLDKDVVGDDLR---KVFSQVGEVTEVRLMMNPQ--T-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~---~~f~~~G~i~~v~i~~d~~--t-g~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. . -..-.-++|+|...++|..||...++.++.|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888999776655544 4788999999999887652 1 1122349999999999999999999999999987765
Q ss_pred CC
Q 004060 272 PS 273 (776)
Q Consensus 272 ~a 273 (776)
..
T Consensus 159 ~g 160 (327)
T KOG2068|consen 159 LG 160 (327)
T ss_pred hC
Confidence 54
No 206
>PHA03169 hypothetical protein; Provisional
Probab=86.65 E-value=23 Score=38.01 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=14.5
Q ss_pred eEeEeeecCCCCCCcceEEEEeec-chHHHHHHH
Q 004060 306 EDLTLVEDSNNEGMNRGFAFLEFS-SRSDAMDAF 338 (776)
Q Consensus 306 ~~i~l~~~~~~~g~~kg~afV~F~-s~e~A~~Al 338 (776)
..|..+....+.-..-.|++.+|. +...|++.+
T Consensus 350 sgvq~lP~~p~~p~~~~y~ItVyCqsk~TaK~V~ 383 (413)
T PHA03169 350 SGVQTFPDAPGSPVIWAYCITVFCQSRGTAKAVI 383 (413)
T ss_pred cceeecCCCCCCCCCceeEEEEEecCcccHHHHH
Confidence 344444443333333455555554 444444433
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.12 E-value=0.53 Score=54.91 Aligned_cols=74 Identities=14% Similarity=0.297 Sum_probs=60.5
Q ss_pred ccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEecc
Q 004060 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454 (776)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (776)
+..+.|++-..+-.-|..+|.+||.|..++.+++ -..|.|+|.+.+.|..|+.+|+|+.+.- ....+++.++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~--~g~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSV--TGAPSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccc--cCCceeEEec
Confidence 4456677777888899999999999999999887 5699999999999999999999998763 2344555665
Q ss_pred CC
Q 004060 455 RP 456 (776)
Q Consensus 455 ~~ 456 (776)
++
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 54
No 208
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=85.87 E-value=8.1 Score=46.46 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=11.0
Q ss_pred CCCCCChHHHHHHHHhh
Q 004060 380 GLPASWDEDRVRELLKN 396 (776)
Q Consensus 380 nLp~~~t~~~L~~~F~~ 396 (776)
+.|..+....|+.+|+.
T Consensus 446 ~~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 446 KGPLEVPASELRKYFEP 462 (1024)
T ss_pred CCccccchHhhhhhccC
Confidence 34555666777777763
No 209
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=85.79 E-value=1.3 Score=55.93 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=12.7
Q ss_pred cEEEEEeCchHHHHHHHHHhCC
Q 004060 416 DFGFVTFDTHDAAVTCAKSINN 437 (776)
Q Consensus 416 g~afV~F~~~~~A~~A~~~l~g 437 (776)
|...+-|++..-+.+|+..|.-
T Consensus 4409 ~~~~la~etl~lvtkals~le~ 4430 (4600)
T COG5271 4409 GSTVLALETLALVTKALSLLEV 4430 (4600)
T ss_pred CceeeehHHHHHHHHHHHHHhh
Confidence 4455566666666666655443
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.58 E-value=1.3 Score=48.24 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=58.4
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.+.|+|-.+|..++--||..|+..|- .|..|+|+++.. -++-.++|+|.+.++|..-...+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 47899999999999999999998875 588999999632 335568999999999999999999999864
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=2.5 Score=47.62 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=62.1
Q ss_pred hhhccccCCCCCC-ChHHHHHHHHhhc----CCeeEEEEeecCC----------CCC-----------------------
Q 004060 372 QVKTVFVDGLPAS-WDEDRVRELLKNY----GEITKIELARNMP----------SAK----------------------- 413 (776)
Q Consensus 372 ~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~~----------~g~----------------------- 413 (776)
.+++|-|.||.|. +...+|.-+|+.| |.|..|.|..... +|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3488999999999 8889999999887 6898888743321 111
Q ss_pred --------------cccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 414 --------------RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 414 --------------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..-||.|+|.+...|.+....++|.+|......+.++.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 13479999999999999999999999987665555443
No 212
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=84.64 E-value=3.3 Score=44.80 Aligned_cols=63 Identities=40% Similarity=0.538 Sum_probs=31.4
Q ss_pred CCCCCCCCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCccccccCCCCCCCCcccC
Q 004060 693 GYGGSRSSISSQDSHGLYSSRQGMGYGGGSYSGGDVGGMYSSSYGSDYMPRGSDVGGSSYSSMYPGRGVGGSSYMG 768 (776)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (776)
-||++.-..+--++.+.|.++|.++-.-++.+.++ || |+||++= ..||+||.++. |++.+|++
T Consensus 349 t~g~ss~g~s~t~~~sty~~~st~~~st~g~S~~~-g~---st~~gs~-----~f~~ss~~s~~----~~~~~~~~ 411 (420)
T PTZ00473 349 TYGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSG-GG---STYGGSS-----TFDGSSRGSSD----SFGVSYFG 411 (420)
T ss_pred ccCCCCcCCccccCCcccCCcccccccCCCCcccC-CC---cCCCCcc-----ccCCcccCccc----ccCccccC
Confidence 44444222345566667777776664211222222 22 4444432 35777777753 44455665
No 213
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=83.76 E-value=3.2 Score=38.36 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=44.4
Q ss_pred hccccCCCCCC----ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCcc
Q 004060 374 KTVFVDGLPAS----WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (776)
Q Consensus 374 ~~l~V~nLp~~----~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (776)
.+|.|.=|..+ -+...|...++.||.|..|.+. | +-.|.|.|.+..+|-.|+.++....-
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCC
Confidence 56666555444 2334555667889999999875 2 56899999999999999998887543
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.71 E-value=2.3 Score=41.91 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=41.5
Q ss_pred hHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhC--CCccCC
Q 004060 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGE 442 (776)
Q Consensus 386 t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g 442 (776)
..+.|+++|..|+.+..+.+++. -+-..|.|.+.++|..|...|+ +..|.|
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g 60 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNG 60 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETT
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCC
Confidence 35789999999999988888755 4578999999999999999999 888986
No 215
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.51 E-value=6.7 Score=35.15 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=47.9
Q ss_pred EEEcCCCcCCcHHHHHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
+.+...|.-++-++|..+...+- .|..++|+++.. .++-.++|+|.+.+.|......+||..|+.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44555555666667766666554 577888887643 367789999999999999999999877653
No 216
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=81.37 E-value=2.9 Score=45.19 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcCCeeEEEEe
Q 004060 387 EDRVRELLKNYGEITKIELA 406 (776)
Q Consensus 387 ~~~L~~~F~~~G~v~~v~i~ 406 (776)
-.+|..++..|-.+....|.
T Consensus 201 C~EL~~F~D~Yd~~mYp~l~ 220 (420)
T PTZ00473 201 CNELNNFFDKYKEHLYPPLK 220 (420)
T ss_pred HHHHHHHHHHHHhhcCcccc
Confidence 35677777777666555443
No 217
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=81.16 E-value=1.2 Score=48.19 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=4.4
Q ss_pred CcHHHHHHh
Q 004060 208 VVGDDLRKV 216 (776)
Q Consensus 208 ~te~dL~~~ 216 (776)
+|.++|..|
T Consensus 190 LT~eDF~kI 198 (324)
T PF05285_consen 190 LTPEDFAKI 198 (324)
T ss_pred CCHHHHHHH
Confidence 455555433
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.54 E-value=1.7 Score=46.46 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=45.0
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCc-eEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhh
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~-i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~ 257 (776)
...|-|-++|.....+||..+|..|+. -..|+.+-+. .||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 445889999999999999999999874 3455555443 599999999999999984
No 219
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=80.43 E-value=1.5 Score=55.35 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=10.2
Q ss_pred eEEEEeecchHHHHHHHHHHc
Q 004060 322 GFAFLEFSSRSDAMDAFKRLQ 342 (776)
Q Consensus 322 g~afV~F~s~e~A~~Al~~l~ 342 (776)
++..+.|.+-.-..+|+..|.
T Consensus 4409 ~~~~la~etl~lvtkals~le 4429 (4600)
T COG5271 4409 GSTVLALETLALVTKALSLLE 4429 (4600)
T ss_pred CceeeehHHHHHHHHHHHHHh
Confidence 334444555555555555443
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.20 E-value=3.1 Score=40.97 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=45.0
Q ss_pred cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc--CceecCccccccCC
Q 004060 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVTPS 273 (776)
Q Consensus 209 te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~--~~~l~gr~i~V~~a 273 (776)
....|+++|..++.+..+.+++. -+-..|.|.+.+.|.+|...|+ +..+.|..|+|.++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 45789999999999888887743 3458999999999999999999 89999999888665
No 221
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=78.07 E-value=1.5 Score=46.30 Aligned_cols=71 Identities=21% Similarity=0.392 Sum_probs=53.2
Q ss_pred hccccCCCCCCChHHH-HH--HHHhhcCCeeEEEEeecCC--CC-CcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 374 KTVFVDGLPASWDEDR-VR--ELLKNYGEITKIELARNMP--SA-KRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~-L~--~~F~~~G~v~~v~i~~~~~--~g-~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
+-+||-+|+..+-.+. |+ ..|.+||.|..|.+..+.. .+ ....-++|+|...++|..||...+|..+.+..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 5678888988754443 43 5689999999998887652 11 11223899999999999999999998887644
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.99 E-value=1.2 Score=38.04 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=41.9
Q ss_pred EEEEeccHHHHHHHhhhccC-ceecCcccccc---------------CCCCCCcccccCccccccHHHHHHHH
Q 004060 241 AFLRFATVEQARQAVTELKN-PVINGKQCGVT---------------PSQDSDTLFLGNICKTWTKEALKEKL 297 (776)
Q Consensus 241 afV~F~s~e~A~~Al~~l~~-~~l~gr~i~V~---------------~a~~~~~l~V~nLp~~~te~~L~~~F 297 (776)
|+|+|.....|...++.-.. ..+++..+.|. .....++|.|.|||....++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999985432 23444444332 22556889999999999999888765
No 223
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.89 E-value=4.8 Score=41.83 Aligned_cols=70 Identities=26% Similarity=0.387 Sum_probs=51.5
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcc-ccccCCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ-CGVTPSQ 274 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~-i~V~~a~ 274 (776)
.-|-|=++|+... .-|..+|.+||.|+.+... .+-.+-+|.|.+.-+|.+||. .|+.+|+|.. |-|.+|.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 3466777776544 4577899999999876543 345689999999999999999 4888887643 3455543
No 224
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.49 E-value=14 Score=29.86 Aligned_cols=49 Identities=12% Similarity=0.291 Sum_probs=39.9
Q ss_pred CChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccC
Q 004060 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (776)
Q Consensus 384 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (776)
.++-++|+..+.+|+ ..+|..+. .|| ||.|.+..+|++|....+++.+.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 367889999999998 45565553 333 89999999999999999999885
No 225
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=71.91 E-value=9.8 Score=31.35 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=35.1
Q ss_pred cCCcHHHHHHhhccCC-----ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 206 KDVVGDDLRKVFSQVG-----EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 206 ~~~te~dL~~~f~~~G-----~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..++..+|..++...+ .|-.|.|.. .|+||+.... .|..++..|++..+.|+.|.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577788888887653 466777763 4789988764 788899999999999999988653
No 226
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=70.70 E-value=10 Score=46.75 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=8.7
Q ss_pred cCCCcCCcHHHHHHhhc
Q 004060 202 GGLDKDVVGDDLRKVFS 218 (776)
Q Consensus 202 ~nLp~~~te~dL~~~f~ 218 (776)
-+||.....-+|..+..
T Consensus 1447 ~~lp~~~~k~~mssiVe 1463 (1640)
T KOG0262|consen 1447 LKLPLDKEKLDMSSIVE 1463 (1640)
T ss_pred EEecCCCcchHHHHHHH
Confidence 35666655555444443
No 227
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.98 E-value=8.8 Score=42.17 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=57.6
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
.+.|+|-.+|..++-.||..|+..|- .|..++|+++.. .++=.++|.|.+.++|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67799999999999999999998754 689999998533 245569999999999999999999887754
No 228
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=69.97 E-value=7.7 Score=35.97 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=44.2
Q ss_pred cceEEEcCCCcCC----cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccC
Q 004060 196 EFEVFVGGLDKDV----VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN 260 (776)
Q Consensus 196 ~~tlfV~nLp~~~----te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~ 260 (776)
-.||.|.=|..++ ....|...++.||+|..|.++- +..|.|.|.+...|=+|+.+++.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC
Confidence 4467777665544 3345666778899999998874 44699999999999999998765
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.76 E-value=9.4 Score=39.23 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=41.4
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCee-EEEEeecCCCCCcccEEEEEeCc-------hHHHHHHHHHhC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEIT-KIELARNMPSAKRKDFGFVTFDT-------HDAAVTCAKSIN 436 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~-------~~~A~~A~~~l~ 436 (776)
.-|+|+||+.++.-.||+..+.+.+.+- .|... -..+-||+.|.+ ..++.++++.+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 5699999999999999999999887542 33322 136789999954 345666665554
No 230
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=65.87 E-value=4.9 Score=46.64 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=11.1
Q ss_pred EEEEeCchHHHHHHHHHhCCCcc
Q 004060 418 GFVTFDTHDAAVTCAKSINNAEL 440 (776)
Q Consensus 418 afV~F~~~~~A~~A~~~l~g~~~ 440 (776)
.||..-+.+|-..|++.|-...+
T Consensus 624 IFcsImsaeDyiDAFEklLkL~L 646 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSL 646 (822)
T ss_pred heeeeecchHHHHHHHHHHhccC
Confidence 45555555555555554433333
No 231
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=65.83 E-value=26 Score=28.84 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=33.2
Q ss_pred CChHHHHHHHHhhcC-----CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 384 SWDEDRVRELLKNYG-----EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 384 ~~t~~~L~~~F~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|..+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----E
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEE
Confidence 467788888887764 4668888744 999998765 788888999999998744433
No 232
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.69 E-value=3 Score=45.75 Aligned_cols=8 Identities=13% Similarity=-0.126 Sum_probs=3.4
Q ss_pred EEEcCCCc
Q 004060 199 VFVGGLDK 206 (776)
Q Consensus 199 lfV~nLp~ 206 (776)
+-+..||.
T Consensus 209 ~~anqLP~ 216 (483)
T KOG2773|consen 209 DDANQLPQ 216 (483)
T ss_pred hhhhcCCC
Confidence 33444443
No 233
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=63.23 E-value=1.7e+02 Score=33.27 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.0
Q ss_pred HHHHhCCCcc
Q 004060 431 CAKSINNAEL 440 (776)
Q Consensus 431 A~~~l~g~~~ 440 (776)
.++.+-+..|
T Consensus 359 ~ie~~l~~~~ 368 (456)
T PRK10590 359 DIEKLLKKEI 368 (456)
T ss_pred HHHHHhcCCC
Confidence 3444434333
No 234
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.08 E-value=21 Score=28.83 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 207 DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 207 ~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
.++-++|+..+..|+-.. |..+ . .| -||.|.+..+|++|+...++..+..-.|.
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d-~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDD-R----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEec-C----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 467889999999987432 2232 2 34 49999999999999999999877765543
No 235
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=60.84 E-value=6.8 Score=46.22 Aligned_cols=77 Identities=29% Similarity=0.358 Sum_probs=61.9
Q ss_pred CcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCcee
Q 004060 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (776)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v 356 (776)
.+..+.|.+...+-.-|..+|.+|| .+..+..+++ -.+|.|.|.+.+.|..|+.+|+++.+... +.+.+|
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V 368 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYG--SVASAWTLRD-------LNMALVSFSSVESAILALDALQGKEVSVT-GAPSRV 368 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhc--chhhheeccc-------ccchhhhhHHHHHHHHhhhhhcCCccccc-CCceeE
Confidence 3455666677778888999999999 6777766666 56899999999999999999999988654 777888
Q ss_pred cccCCCC
Q 004060 357 SFADSFI 363 (776)
Q Consensus 357 ~~a~~~~ 363 (776)
.++....
T Consensus 369 ~~ak~~~ 375 (1007)
T KOG4574|consen 369 SFAKTLP 375 (1007)
T ss_pred Eeccccc
Confidence 8876543
No 236
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=60.84 E-value=4.5 Score=46.92 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=8.3
Q ss_pred CCCCCChHHHHHHH
Q 004060 380 GLPASWDEDRVREL 393 (776)
Q Consensus 380 nLp~~~t~~~L~~~ 393 (776)
-||-.+|+++|..+
T Consensus 551 ~~~l~vTledll~a 564 (822)
T KOG2141|consen 551 SLPLSVTLEDLLHA 564 (822)
T ss_pred hccccccHHHhhCh
Confidence 34555677666654
No 237
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.64 E-value=3.3 Score=46.44 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=57.8
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
...++|||.|++++++-.+|..+|..+--+..+.+.....-.+...+.+|+|.-.-....|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 345889999999999999999999998777666655443334556789999998888888888899987754
No 238
>PHA03169 hypothetical protein; Provisional
Probab=60.63 E-value=43 Score=36.06 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=5.2
Q ss_pred HHHHHHhhc
Q 004060 292 ALKEKLKHY 300 (776)
Q Consensus 292 ~L~~~F~~~ 300 (776)
-...||.++
T Consensus 302 ~r~~Ffr~~ 310 (413)
T PHA03169 302 ARRRFFRQV 310 (413)
T ss_pred HHHHHHHHh
Confidence 345666665
No 239
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=59.81 E-value=7.3 Score=33.33 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=41.1
Q ss_pred EEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCC----CCchhhhhhhhccccCCCCCCChHHHHHHHHh
Q 004060 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI----DPGDEIMAQVKTVFVDGLPASWDEDRVRELLK 395 (776)
Q Consensus 324 afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~----~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 395 (776)
|+|+|....-|..-++. ....+.+. ...+.|....-.. ..+-......++|.|.|||....++.|++.++
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~-~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLE-DCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEEC-CEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 67899999888887763 22222222 2223332211111 11112223458899999999999999998654
No 240
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=58.64 E-value=8.6 Score=47.31 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.5
Q ss_pred EEEEEeCc
Q 004060 417 FGFVTFDT 424 (776)
Q Consensus 417 ~afV~F~~ 424 (776)
|+=..|++
T Consensus 1586 ~qkMsFET 1593 (1640)
T KOG0262|consen 1586 LQKMSFET 1593 (1640)
T ss_pred hHhhhHHH
Confidence 33444444
No 241
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=58.60 E-value=12 Score=35.44 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=52.1
Q ss_pred ceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCC-CchhhhhhhhccccCCCCCC-ChHHHHHHHHhhcC
Q 004060 321 RGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID-PGDEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYG 398 (776)
Q Consensus 321 kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G 398 (776)
.++..++|.+.+++.+++.. ....+. +..+.+..-.+... ..........=|.|.|||.. .+++-|+.+.+.+|
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~---~p~~~~-~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKG---GPWNFN-GHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCeEEEEEEeccceeEEEec---cccccc-ccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 67889999999999888762 222221 22232222221111 11111112244778899998 78899999999999
Q ss_pred CeeEEEEee
Q 004060 399 EITKIELAR 407 (776)
Q Consensus 399 ~v~~v~i~~ 407 (776)
.+..++...
T Consensus 131 ~~i~vD~~t 139 (153)
T PF14111_consen 131 EPIEVDENT 139 (153)
T ss_pred CeEEEEcCC
Confidence 998887653
No 242
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=57.55 E-value=17 Score=40.19 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=6.7
Q ss_pred ChHHHHHHHHhhc
Q 004060 385 WDEDRVRELLKNY 397 (776)
Q Consensus 385 ~t~~~L~~~F~~~ 397 (776)
.-+.+|+.+....
T Consensus 561 ylerHLRaVieeI 573 (620)
T COG4547 561 YLERHLRAVIEEI 573 (620)
T ss_pred HHHHHHHHHHHHH
Confidence 3455565555443
No 243
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=56.40 E-value=19 Score=35.77 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=6.4
Q ss_pred CccccCCCCCCCcc
Q 004060 3 PRTVKRGAAGPRRT 16 (776)
Q Consensus 3 ~~~~k~~~~~~~~~ 16 (776)
|+..++..+...|+
T Consensus 49 ~k~~~~~~~t~~rK 62 (200)
T PF03286_consen 49 PKQPKKKRPTAPRK 62 (200)
T ss_pred CCCCCCCCCCCccC
Confidence 55555544333333
No 244
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=53.43 E-value=13 Score=39.02 Aligned_cols=14 Identities=57% Similarity=0.942 Sum_probs=9.6
Q ss_pred CCCcccCCCCCCCC
Q 004060 762 GGSSYMGSGGSGSY 775 (776)
Q Consensus 762 ~~~~~~~~~~~~~~ 775 (776)
|++||.||++||+|
T Consensus 258 GGgS~GGGGasg~W 271 (271)
T COG1512 258 GGGSSGGGGASGSW 271 (271)
T ss_pred CCCCCCCCCCCCCC
Confidence 33567777788876
No 245
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.17 E-value=9.3 Score=42.11 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=2.6
Q ss_pred HHHHHh
Q 004060 390 VRELLK 395 (776)
Q Consensus 390 L~~~F~ 395 (776)
|++|+.
T Consensus 403 LkelIe 408 (483)
T KOG2773|consen 403 LKELIE 408 (483)
T ss_pred HHHHHH
Confidence 444443
No 246
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=48.60 E-value=11 Score=44.61 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=4.9
Q ss_pred HHHHHhhcCC
Q 004060 293 LKEKLKHYGV 302 (776)
Q Consensus 293 L~~~F~~~G~ 302 (776)
|.+++.+||.
T Consensus 372 l~~~a~~ygL 381 (622)
T PF02724_consen 372 LEKYAPKYGL 381 (622)
T ss_pred HHHHHHhcCC
Confidence 3444456663
No 247
>PF08081 RBM1CTR: RBM1CTR (NUC064) family; InterPro: IPR012604 This region is found in RBM1-like RNA binding hnRNPs [].
Probab=48.11 E-value=38 Score=24.66 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=4.9
Q ss_pred CCCCCCCCCCCC
Q 004060 541 RRAPVPSYPKPG 552 (776)
Q Consensus 541 rR~~~p~~~~~~ 552 (776)
||.+.+++++.+
T Consensus 23 rRe~~~srRd~y 34 (45)
T PF08081_consen 23 RREPMPSRRDDY 34 (45)
T ss_pred CCCCCCcccccc
Confidence 344444444333
No 248
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=47.65 E-value=9.6 Score=45.14 Aligned_cols=9 Identities=11% Similarity=0.479 Sum_probs=4.0
Q ss_pred cEEEEEeCc
Q 004060 416 DFGFVTFDT 424 (776)
Q Consensus 416 g~afV~F~~ 424 (776)
.|-|+.-.+
T Consensus 499 ~fr~~~l~d 507 (622)
T PF02724_consen 499 PFRYCVLKD 507 (622)
T ss_pred CeEEEEeCC
Confidence 344444444
No 249
>COG4371 Predicted membrane protein [Function unknown]
Probab=47.47 E-value=30 Score=35.15 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 004060 689 RSNLGYGGS 697 (776)
Q Consensus 689 ~~~~~~~~~ 697 (776)
||.=+.|||
T Consensus 48 rSGGriGGg 56 (334)
T COG4371 48 RSGGRIGGG 56 (334)
T ss_pred hhCCCccCC
Confidence 333334443
No 250
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.34 E-value=6.6 Score=44.12 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=57.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceec
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~ 264 (776)
.+.++|||.|++++++-.+|..++..+--+..+.+.......+...+.||.|.---....|+.+||+.-+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 45677999999999999999999999887777776655445667778999999888888888888765443
No 251
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=43.04 E-value=30 Score=28.10 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=44.5
Q ss_pred HHHHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCCC
Q 004060 211 DDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (776)
Q Consensus 211 ~dL~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~ 276 (776)
++|.+-|...| .|..|.-+....++.....-||++....+.+. .++=..|+++.|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46777787777 67888888777677778888888877655333 34445678888888765443
No 252
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=42.55 E-value=49 Score=35.95 Aligned_cols=79 Identities=11% Similarity=0.197 Sum_probs=56.8
Q ss_pred hhhhccccCCCCCC-ChHHHHHHHHhhc----CCeeEEEEeecCCC----------------------------------
Q 004060 371 AQVKTVFVDGLPAS-WDEDRVRELLKNY----GEITKIELARNMPS---------------------------------- 411 (776)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~~~~---------------------------------- 411 (776)
..+++|-|-||.|. +...+|..+|+.| |.|..|.|......
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 34588999999998 8888999999876 67777776322100
Q ss_pred ------C-------------------------CcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 412 ------A-------------------------KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 412 ------g-------------------------~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
| ...-||.|+|.+...+......++|.++......+.+
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DL 292 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDL 292 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeee
Confidence 0 0023789999999999999999999988754433333
No 253
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=41.78 E-value=32 Score=38.79 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=13.3
Q ss_pred eEEEcCCCcCCcHHHHHHhh
Q 004060 198 EVFVGGLDKDVVGDDLRKVF 217 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f 217 (776)
.-.|..||--+..++..+++
T Consensus 800 k~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 800 KNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHhcCCcccchHHHHHHh
Confidence 35677888777776665554
No 254
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=40.95 E-value=27 Score=38.63 Aligned_cols=8 Identities=25% Similarity=0.547 Sum_probs=3.5
Q ss_pred ecCccccc
Q 004060 263 INGKQCGV 270 (776)
Q Consensus 263 l~gr~i~V 270 (776)
+.|++|.|
T Consensus 426 MrGRpItv 433 (620)
T COG4547 426 MRGRPITV 433 (620)
T ss_pred cCCcceeh
Confidence 34444444
No 255
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=39.88 E-value=30 Score=28.04 Aligned_cols=62 Identities=15% Similarity=0.302 Sum_probs=44.6
Q ss_pred HHHHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 211 DDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 211 ~dL~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
++|++.|...| .+..|.-+....+......-||+.....+-.. .|+-..|+++.+.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788888888 68888888888877778888888776543333 3445567888888876543
No 256
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.29 E-value=37 Score=36.63 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=44.7
Q ss_pred EEEEeccHHHHHHHhhhccCceecCccccccCCCCCCcccccCccccccHHHHHHHHh
Q 004060 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298 (776)
Q Consensus 241 afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~ 298 (776)
|||+|.+..+|..|++.+... ....+.|..+.+.+.|.-.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 799999999999999965443 34667889999999999999987777766665544
No 257
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.11 E-value=17 Score=35.24 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=50.1
Q ss_pred eEEEcCCCcCCc-----HHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCc-ccccc
Q 004060 198 EVFVGGLDKDVV-----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-QCGVT 271 (776)
Q Consensus 198 tlfV~nLp~~~t-----e~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr-~i~V~ 271 (776)
++++.+|+..+- ......+|.++.+.....+++ +.++.-|.|.+++.|..|..+++...|.|+ .|..-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 466677765432 234556777666655444443 355678899999999999999999999988 66655
Q ss_pred CCCCC
Q 004060 272 PSQDS 276 (776)
Q Consensus 272 ~a~~~ 276 (776)
+++..
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 55433
No 258
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.04 E-value=97 Score=32.55 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=48.6
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecC-------CCCCcccEEEEEeCchHHHHHHH
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM-------PSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-------~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
++.|.+.||...++--.+...|-+||.|+.|.++.+. ...+......+.|-+.+.|..-.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 4788999999999988999999999999999999775 11233567899999998886543
No 259
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.71 E-value=1.5e+02 Score=30.50 Aligned_cols=67 Identities=24% Similarity=0.486 Sum_probs=41.5
Q ss_pred hccccCCCCCC------------ChHHHHHHHHhhcCCeeEEEEeec-----CCCCCcc-----cEE---------EEEe
Q 004060 374 KTVFVDGLPAS------------WDEDRVRELLKNYGEITKIELARN-----MPSAKRK-----DFG---------FVTF 422 (776)
Q Consensus 374 ~~l~V~nLp~~------------~t~~~L~~~F~~~G~v~~v~i~~~-----~~~g~~~-----g~a---------fV~F 422 (776)
.||++.+||-. .+++.|+..|..||.|..|.|+.- ..+++.. ||+ ||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 56777666643 457889999999999999988632 2344443 333 3444
Q ss_pred CchHHHHHHHHHhCCCcc
Q 004060 423 DTHDAAVTCAKSINNAEL 440 (776)
Q Consensus 423 ~~~~~A~~A~~~l~g~~~ 440 (776)
-.-..-..|+..|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 444444455566666543
No 260
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=33.38 E-value=58 Score=39.89 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.7
Q ss_pred EEEcCCC
Q 004060 199 VFVGGLD 205 (776)
Q Consensus 199 lfV~nLp 205 (776)
+||-.+|
T Consensus 907 ~wvl~~P 913 (1096)
T TIGR00927 907 IYLFLLP 913 (1096)
T ss_pred EeEEecc
Confidence 5555555
No 261
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=32.37 E-value=43 Score=37.98 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=11.3
Q ss_pred EEEcCCCcCCcHHHHHHhhcc
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQ 219 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~ 219 (776)
.++-|++..+++..|+..+..
T Consensus 476 k~~p~~~~~v~e~~vR~~l~r 496 (555)
T KOG2393|consen 476 KTVPGSDIKVNEEAVRRYLER 496 (555)
T ss_pred ccCCCcccchhHHHHHHHHhh
Confidence 444455555566666655553
No 262
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=32.00 E-value=92 Score=29.19 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=49.9
Q ss_pred cceEEEEeccHHHHHHHhhhccCceecCccccccCCCCC------------CcccccCcccc-ccHHHHHHHHhhcCCcc
Q 004060 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS------------DTLFLGNICKT-WTKEALKEKLKHYGVDN 304 (776)
Q Consensus 238 ~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~------------~~l~V~nLp~~-~te~~L~~~F~~~G~~~ 304 (776)
.++..+.|.+.+++.+++. .....+.+..+.+..-.+. --|.|.|||.. ++++-++.+....| .
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG--~ 131 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG--E 131 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC--C
Confidence 5689999999999999988 3555667766666443211 22667899966 67788889999999 4
Q ss_pred eeEeEe
Q 004060 305 VEDLTL 310 (776)
Q Consensus 305 i~~i~l 310 (776)
+..+..
T Consensus 132 ~i~vD~ 137 (153)
T PF14111_consen 132 PIEVDE 137 (153)
T ss_pred eEEEEc
Confidence 444443
No 263
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.78 E-value=1.4e+02 Score=24.28 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=38.0
Q ss_pred eEEEEeccHHHHHHHhhhccCceecCccccccCCCCCCcccccCcccc---ccHHHHHHHHhhcC
Q 004060 240 FAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKT---WTKEALKEKLKHYG 301 (776)
Q Consensus 240 ~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~~~l~V~nLp~~---~te~~L~~~F~~~G 301 (776)
+.+|.|.+..+|.+|-+.|+..-+..+.+.+...-... .++... ...+.+.++++..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~----CG~al~~~~~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAG----CGLALRFEPEDLEKIKEILEENG 63 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCC----CCEEEEEChhhHHHHHHHHHHCC
Confidence 58999999999999999988776666665554332111 233222 34566677777665
No 264
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.60 E-value=61 Score=35.25 Aligned_cols=53 Identities=9% Similarity=0.262 Sum_probs=42.6
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCe-eEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEI-TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
..|-|-++|.....+||..+|..|+.- ..|..+.+ -.||-.|.+...|..||-
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 678899999999999999999999642 23444433 489999999999999976
No 265
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=13 Score=40.62 Aligned_cols=75 Identities=7% Similarity=-0.147 Sum_probs=60.7
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..|+..||..+++.++.-+|..+|.|.-+.+....+.+....++||...+ ..|..||..+.-..+.+.+++|..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 46788999999999999999999999888877766666677788887654 5677888888777888888887665
No 266
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=30.38 E-value=90 Score=32.38 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=38.5
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCce-EEEEEeecCCCCCCcceEEEEeccH-------HHHHHHhhhc
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEV-TEVRLMMNPQTKKNKGFAFLRFATV-------EQARQAVTEL 258 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i-~~v~i~~d~~tg~~~g~afV~F~s~-------e~A~~Al~~l 258 (776)
.|+|+||+.++.-.+|+..+.+.+.+ ..+.. ....+-||+.|.+. .++.+|+..+
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 39999999999999999999887643 22222 22466799999764 3445555443
No 267
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=30.00 E-value=1.6e+02 Score=32.17 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=27.4
Q ss_pred ceEEEcCCCcC-CcHHHHHHhhccC----CceEEEEEee
Q 004060 197 FEVFVGGLDKD-VVGDDLRKVFSQV----GEVTEVRLMM 230 (776)
Q Consensus 197 ~tlfV~nLp~~-~te~dL~~~f~~~----G~i~~v~i~~ 230 (776)
..|.|-||.|+ +...+|..+|+.| |+|..|.|..
T Consensus 147 krLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 147 KRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred cceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 34899999987 7788999999876 5788888764
No 268
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=29.77 E-value=48 Score=38.15 Aligned_cols=12 Identities=17% Similarity=0.706 Sum_probs=8.2
Q ss_pred cceEEEEeecch
Q 004060 320 NRGFAFLEFSSR 331 (776)
Q Consensus 320 ~kg~afV~F~s~ 331 (776)
.+||-|.+|...
T Consensus 319 ~rG~rFSTYA~w 330 (509)
T PRK05901 319 TKGYKFSTYATW 330 (509)
T ss_pred ccCCCchhhhHH
Confidence 377778777653
No 269
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.15 E-value=58 Score=35.41 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=48.0
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCc-eEEEEEeecCCC--CCCcceEEEEeccHHHHHHHhhhccCceec
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~-i~~v~i~~d~~t--g~~~g~afV~F~s~e~A~~Al~~l~~~~l~ 264 (776)
.+.|.|.+||..+++++|.+....|-. |....+...... ....+.|||.|.+.++.......+++++|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 345999999999999999888777643 222222211111 223567999999999988888888877553
No 270
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=29.07 E-value=66 Score=31.20 Aligned_cols=58 Identities=28% Similarity=0.195 Sum_probs=40.6
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCC-CCCcceEEEEeccHHHHHHHhhh
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTE 257 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~t-g~~~g~afV~F~s~e~A~~Al~~ 257 (776)
.++++.. +.+...++|.++.. |.+..|.+...... -..+|-.||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3446655 55555566666666 77888877654321 25789999999999999998874
No 271
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=28.64 E-value=99 Score=30.04 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=38.8
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEeCchHHHHHHHHH
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS-AKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
++++.. +.....++|.++.. |.+.+|.+...... ...+|-.||+|.+.+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 556655 33344456666655 78888876544322 25688999999999999988764
No 272
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=28.24 E-value=51 Score=29.86 Aligned_cols=50 Identities=10% Similarity=0.221 Sum_probs=27.2
Q ss_pred eEEEcCCCcCC---------cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHH
Q 004060 198 EVFVGGLDKDV---------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQ 250 (776)
Q Consensus 198 tlfV~nLp~~~---------te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~ 250 (776)
++.|.|++... ..+.|.+.|..|..+.. +.+.+. ....+++.|.|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv-~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKV-KPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEE-EEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCcee-EECcCC--CCCcEEEEEEECCChH
Confidence 46777876543 45789999999988764 444433 3568999999987543
No 273
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=28.10 E-value=47 Score=37.37 Aligned_cols=10 Identities=40% Similarity=0.700 Sum_probs=3.9
Q ss_pred CCCCCCCCCC
Q 004060 563 VPPPRSRAPV 572 (776)
Q Consensus 563 ~pppR~~~~~ 572 (776)
.||+-...++
T Consensus 434 ~pP~~~~~r~ 443 (694)
T KOG4264|consen 434 PPPPSSSSRR 443 (694)
T ss_pred CCCCcccccc
Confidence 3344333333
No 274
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=27.93 E-value=1.1e+03 Score=28.23 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=10.3
Q ss_pred CCCCChHHHHHHHHhhc
Q 004060 381 LPASWDEDRVRELLKNY 397 (776)
Q Consensus 381 Lp~~~t~~~L~~~F~~~ 397 (776)
.-|+|.++|.+-+....
T Consensus 7 ~rWDW~~ED~K~VvqRV 23 (828)
T PF04094_consen 7 ERWDWGPEDFKMVVQRV 23 (828)
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 34666667766666543
No 275
>PF06403 Lamprin: Lamprin; InterPro: IPR009437 This family consists of several lamprin proteins from the Sea lamprey Petromyzon marinus. Lamprin, an insoluble non-collagen, non-elastin protein, is the major connective tissue component of the fibrillar extracellular matrix of lamprey annular cartilage. Although not generally homologous to any other protein, soluble lamprins contain a tandemly repeated peptide sequence (GGLGY), which is present in both silkmoth chorion proteins and spider dragline silk. Strong homologies to this repeat sequence are also present in several mammalian and avian elastins. It is thought that these proteins share a structural motif which promotes self-aggregation and fibril formation in proteins through interdigitation of hydrophobic side chains in beta-sheet/beta-turn structures, a motif that has been preserved in recognisable form over several hundred million years of evolution [].; GO: 0005198 structural molecule activity, 0005578 proteinaceous extracellular matrix
Probab=27.55 E-value=58 Score=28.05 Aligned_cols=23 Identities=43% Similarity=1.032 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccC
Q 004060 713 RQGMGYGGGSYSGGDVGGMYSSS 735 (776)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~ 735 (776)
-.+++|||=.++|...||.|.--
T Consensus 60 ~aglgy~glgy~g~algg~ythh 82 (138)
T PF06403_consen 60 VAGLGYGGLGYPGAALGGVYTHH 82 (138)
T ss_pred ccccccCccCCCcccccceeeec
Confidence 45677776566777778877643
No 276
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=27.19 E-value=67 Score=29.11 Aligned_cols=45 Identities=9% Similarity=0.260 Sum_probs=27.2
Q ss_pred hHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCc-hHHHHHHHH
Q 004060 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT-HDAAVTCAK 433 (776)
Q Consensus 386 t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~-~~~A~~A~~ 433 (776)
+-+.|++.|..|..+. |..+.+.. -..|+++|+|.. -.--..|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998875 55555543 457899999975 455555554
No 277
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.79 E-value=30 Score=34.97 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=28.1
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEE
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIE 404 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 404 (776)
..+||+-|||..+|++.|..+..++|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 38999999999999999999999999765544
No 278
>COG4371 Predicted membrane protein [Function unknown]
Probab=26.59 E-value=94 Score=31.72 Aligned_cols=6 Identities=50% Similarity=0.811 Sum_probs=2.2
Q ss_pred CCCCCC
Q 004060 715 GMGYGG 720 (776)
Q Consensus 715 ~~~~~~ 720 (776)
|...||
T Consensus 50 GGriGG 55 (334)
T COG4371 50 GGRIGG 55 (334)
T ss_pred CCCccC
Confidence 333333
No 279
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=25.47 E-value=74 Score=39.02 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=2.9
Q ss_pred eEEEEec
Q 004060 240 FAFLRFA 246 (776)
Q Consensus 240 ~afV~F~ 246 (776)
+-.|.|-
T Consensus 933 ~y~ltFi 939 (1096)
T TIGR00927 933 FFVITFL 939 (1096)
T ss_pred eeeehHH
Confidence 3344443
No 280
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.23 E-value=41 Score=36.67 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=48.3
Q ss_pred hccccCCCCCCChH--------HHHHHHHhh--cCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHH
Q 004060 374 KTVFVDGLPASWDE--------DRVRELLKN--YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 374 ~~l~V~nLp~~~t~--------~~L~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
+.+|+.++....+. ++|..+|.. ++.+..|...++.....++|..|++|.....|++++
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 56777777665443 499999999 678888888888777888999999999999999885
No 281
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.02 E-value=2.6e+02 Score=21.50 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=40.5
Q ss_pred ccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCch----HHHHHHHHH
Q 004060 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH----DAAVTCAKS 434 (776)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~----~~A~~A~~~ 434 (776)
+|.|.||.-.--...|.+.+...-.|..+.+-.. .+.+-|+|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4667777777778899999999988888887654 56899999744 555566554
No 282
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.95 E-value=66 Score=37.34 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=3.9
Q ss_pred ceEEEcCCC
Q 004060 197 FEVFVGGLD 205 (776)
Q Consensus 197 ~tlfV~nLp 205 (776)
.+||-....
T Consensus 296 Y~vfTt~fD 304 (600)
T TIGR01651 296 YKVFTTAFD 304 (600)
T ss_pred ceecchhhh
Confidence 344444443
No 283
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.89 E-value=1.4e+02 Score=23.68 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=15.6
Q ss_pred HHHHHHHhhcCCeeEEEEe
Q 004060 388 DRVRELLKNYGEITKIELA 406 (776)
Q Consensus 388 ~~L~~~F~~~G~v~~v~i~ 406 (776)
++|+++|+..|.|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999766553
No 284
>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]
Probab=22.06 E-value=40 Score=37.46 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=7.6
Q ss_pred CCCCCcceEEEE
Q 004060 233 QTKKNKGFAFLR 244 (776)
Q Consensus 233 ~tg~~~g~afV~ 244 (776)
+-+++.||.|-.
T Consensus 241 Ni~~FSGF~w~~ 252 (594)
T KOG2266|consen 241 NIGQFSGFVWSK 252 (594)
T ss_pred hhhcccCccccc
Confidence 345667777765
No 285
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=21.85 E-value=58 Score=31.65 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=46.5
Q ss_pred hccccCCCCCCC-----hHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 374 KTVFVDGLPASW-----DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 374 ~~l~V~nLp~~~-----t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
+++.+.+|+..+ .......+|.+|.+.....+++. .++.-|-|.+...|..|...++...|.++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 345555555442 22345667777777766666644 567788999999999999999999998864
No 286
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.63 E-value=69 Score=37.20 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=4.6
Q ss_pred HHHHHHHHhh
Q 004060 387 EDRVRELLKN 396 (776)
Q Consensus 387 ~~~L~~~F~~ 396 (776)
+.+|+.+...
T Consensus 542 ~~hLr~vi~~ 551 (600)
T TIGR01651 542 ERHLRAVIEE 551 (600)
T ss_pred HHHHHHHHHH
Confidence 3445544443
No 287
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=70 Score=37.10 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=6.2
Q ss_pred cccccCcccc
Q 004060 278 TLFLGNICKT 287 (776)
Q Consensus 278 ~l~V~nLp~~ 287 (776)
+|||.|+|..
T Consensus 528 ~v~l~nvP~~ 537 (754)
T KOG1980|consen 528 RVFLRNVPVS 537 (754)
T ss_pred EEEeecCcHH
Confidence 5666776654
No 288
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=21.27 E-value=19 Score=40.10 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=14.7
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVG 221 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G 221 (776)
..++.+-|+|.......|..+|..|.
T Consensus 190 a~~~l~~~~~~~~~d~~le~i~kdla 215 (517)
T KOG3118|consen 190 ATKVLTFNKPKEDKDTHLEEIVKDLA 215 (517)
T ss_pred ceehhhhcCcchhHHHHHHHHHHHHH
Confidence 33455667776655556666555443
No 289
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.96 E-value=1.6e+02 Score=34.06 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=3.9
Q ss_pred HHHHHhhcc
Q 004060 211 DDLRKVFSQ 219 (776)
Q Consensus 211 ~dL~~~f~~ 219 (776)
.+|..|+..
T Consensus 153 ~~ld~fl~~ 161 (733)
T KOG0650|consen 153 DELDSFLAK 161 (733)
T ss_pred chHHHHHHh
Confidence 444444443
No 290
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=1.1e+02 Score=36.02 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=19.8
Q ss_pred cceEEEcCCCcCCcHHHHHHhhcc-CCceEEEEEeecCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQ-VGEVTEVRLMMNPQTK 235 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~-~G~i~~v~i~~d~~tg 235 (776)
...+...++|..+-..+....+.. ---|..|-++-....|
T Consensus 100 k~q~~~~~~p~T~y~~~yl~~l~~~p~~irnV~l~GhLhhG 140 (971)
T KOG0468|consen 100 KFQIHERDVPETVYDLEYLAGLMDNPERIRNVGLVGHLHHG 140 (971)
T ss_pred hhhhhhcccchhhhhHHHHHHhccCcceEEEEEEeeccccC
Confidence 344667788876555443333332 2334555555443333
No 291
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.40 E-value=72 Score=34.71 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=49.8
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCC-eeEEEEeecCCC--CCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..|.|.+||...++.+|.+....|-. |.+..+...... ..-.++|+|.|...++...-...++|+.|..
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 67889999999999988888777643 333333321111 1226789999999999988888899988754
Done!