Query 004060
Match_columns 776
No_of_seqs 619 out of 3710
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.4E-37 8.3E-42 328.0 26.8 247 191-457 17-264 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-37 1.1E-41 328.5 22.5 251 191-456 36-290 (292)
3 1b7f_A Protein (SXL-lethal pro 99.9 5.5E-27 1.9E-31 227.6 17.7 166 195-451 2-167 (168)
4 1fxl_A Paraneoplastic encephal 99.9 1.8E-26 6.1E-31 223.5 19.1 164 196-450 2-165 (167)
5 1l3k_A Heterogeneous nuclear r 99.9 1.8E-26 6.3E-31 230.0 18.0 172 194-456 11-182 (196)
6 2qfj_A FBP-interacting repress 99.9 1.6E-26 5.3E-31 234.2 16.3 179 194-454 26-204 (216)
7 4f02_A Polyadenylate-binding p 99.9 1E-26 3.5E-31 235.5 14.4 180 195-382 14-201 (213)
8 4f02_A Polyadenylate-binding p 99.9 1.2E-25 4.3E-30 227.5 17.9 169 273-456 12-180 (213)
9 2cjk_A Nuclear polyadenylated 99.9 5.9E-26 2E-30 220.2 14.3 155 195-443 2-156 (167)
10 3md3_A Nuclear and cytoplasmic 99.9 2.8E-25 9.7E-30 214.8 17.3 164 277-454 1-164 (166)
11 3nmr_A Cugbp ELAV-like family 99.9 6.3E-25 2.2E-29 214.4 18.8 168 275-450 2-172 (175)
12 3nmr_A Cugbp ELAV-like family 99.9 4.1E-25 1.4E-29 215.8 16.6 162 195-360 2-175 (175)
13 2g4b_A Splicing factor U2AF 65 99.9 2.2E-24 7.5E-29 210.2 17.1 150 195-442 3-163 (172)
14 3md3_A Nuclear and cytoplasmic 99.9 1.9E-24 6.5E-29 209.0 15.8 157 197-360 1-165 (166)
15 2yh0_A Splicing factor U2AF 65 99.9 5E-24 1.7E-28 212.7 17.9 181 195-457 3-194 (198)
16 3tyt_A Heterogeneous nuclear r 99.9 1.6E-24 5.6E-29 217.4 13.0 164 275-451 3-201 (205)
17 1fje_B Nucleolin RBD12, protei 99.9 9.1E-25 3.1E-29 213.7 10.0 164 193-456 10-173 (175)
18 3pgw_A U1-A; protein-RNA compl 99.9 1.7E-23 5.8E-28 221.2 20.2 237 194-441 7-270 (282)
19 3sde_A Paraspeckle component 1 99.9 6.6E-23 2.2E-27 214.2 16.8 159 194-362 20-179 (261)
20 3tyt_A Heterogeneous nuclear r 99.9 5.8E-23 2E-27 206.1 15.4 156 195-358 3-203 (205)
21 1qm9_A Polypyrimidine tract-bi 99.9 9.5E-23 3.3E-27 203.6 16.2 183 196-444 3-188 (198)
22 2adc_A Polypyrimidine tract-bi 99.9 2.1E-22 7.2E-27 206.1 16.7 166 271-456 29-227 (229)
23 3sde_A Paraspeckle component 1 99.9 7.2E-23 2.5E-27 213.8 13.4 159 274-456 20-178 (261)
24 3smz_A Protein raver-1, ribonu 99.9 4.6E-22 1.6E-26 210.4 16.8 164 194-364 93-266 (284)
25 2adc_A Polypyrimidine tract-bi 99.9 9.7E-22 3.3E-26 201.2 16.5 155 194-362 32-228 (229)
26 2ghp_A U4/U6 snRNA-associated 99.9 6.8E-22 2.3E-26 210.0 12.8 161 195-362 116-291 (292)
27 2kn4_A Immunoglobulin G-bindin 99.8 2.1E-18 7.3E-23 165.6 13.9 142 308-456 3-149 (158)
28 3pgw_S U1-70K; protein-RNA com 99.8 2E-18 7E-23 192.1 14.6 81 372-456 101-181 (437)
29 4f25_A Polyadenylate-binding p 99.7 2.5E-17 8.5E-22 149.2 7.9 95 196-292 5-113 (115)
30 4fxv_A ELAV-like protein 1; RN 99.7 6.1E-17 2.1E-21 142.3 9.1 81 372-456 18-98 (99)
31 2i2y_A Fusion protein consists 99.7 7.4E-17 2.5E-21 153.4 8.9 119 317-444 9-139 (150)
32 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.7E-16 5.7E-21 152.0 10.3 82 371-456 37-118 (156)
33 4fxv_A ELAV-like protein 1; RN 99.7 1.5E-16 5E-21 139.9 9.1 83 193-275 16-98 (99)
34 3q2s_C Cleavage and polyadenyl 99.7 7.1E-17 2.4E-21 164.4 6.6 73 373-445 68-142 (229)
35 2lea_A Serine/arginine-rich sp 99.6 4.8E-16 1.7E-20 144.8 7.4 113 322-443 5-117 (135)
36 3s8s_A Histone-lysine N-methyl 99.6 8.5E-16 2.9E-20 137.7 8.6 71 372-442 5-75 (110)
37 1u6f_A Tcubp1, RNA-binding pro 99.6 1.7E-15 5.8E-20 142.0 10.7 83 371-457 40-122 (139)
38 1whw_A Hypothetical protein ri 99.6 2E-15 6.8E-20 132.6 10.2 81 372-456 7-87 (99)
39 2lxi_A RNA-binding protein 10; 99.6 4E-16 1.4E-20 134.9 5.5 81 374-458 2-84 (91)
40 2cqd_A RNA-binding region cont 99.6 3.5E-15 1.2E-19 135.2 11.9 80 372-456 16-95 (116)
41 2dnz_A Probable RNA-binding pr 99.6 1.9E-15 6.6E-20 131.6 9.8 72 372-443 4-75 (95)
42 2div_A TRNA selenocysteine ass 99.6 1.5E-15 5.3E-20 133.4 9.2 86 372-457 8-94 (99)
43 1rk8_A CG8781-PA, CG8781-PA pr 99.6 9.8E-16 3.4E-20 148.1 8.6 116 326-442 11-141 (165)
44 2fy1_A RNA-binding motif prote 99.6 2.8E-15 9.6E-20 135.8 10.7 70 373-443 7-76 (116)
45 2kn4_A Immunoglobulin G-bindin 99.6 1.9E-15 6.5E-20 144.9 9.8 132 225-364 2-152 (158)
46 1x5t_A Splicing factor 3B subu 99.6 1.7E-15 5.7E-20 132.3 8.6 82 372-457 4-86 (96)
47 3ex7_B RNA-binding protein 8A; 99.6 1.7E-15 5.8E-20 139.4 8.9 73 372-444 21-93 (126)
48 2cq0_A Eukaryotic translation 99.6 2.8E-15 9.6E-20 132.7 9.0 82 372-457 14-95 (103)
49 3s8s_A Histone-lysine N-methyl 99.6 3.3E-15 1.1E-19 133.9 9.5 82 194-275 4-85 (110)
50 2dgo_A Cytotoxic granule-assoc 99.6 1.2E-14 4.2E-19 131.3 13.4 82 371-456 13-94 (115)
51 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.6E-15 9E-20 132.6 8.6 82 372-457 11-92 (102)
52 2lkz_A RNA-binding protein 5; 99.6 1.2E-15 4.1E-20 132.6 6.1 78 374-455 10-93 (95)
53 3md1_A Nuclear and cytoplasmic 99.6 4.9E-15 1.7E-19 125.5 9.7 79 374-456 2-80 (83)
54 2cpz_A CUG triplet repeat RNA- 99.6 5.2E-15 1.8E-19 133.8 10.5 82 372-457 24-105 (115)
55 2dgs_A DAZ-associated protein 99.6 4.8E-15 1.7E-19 130.2 9.7 71 372-443 9-79 (99)
56 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.5E-15 1.5E-19 127.0 9.0 71 372-442 5-75 (87)
57 2dnm_A SRP46 splicing factor; 99.6 2.9E-15 9.8E-20 132.7 8.1 71 372-442 12-82 (103)
58 1x5s_A Cold-inducible RNA-bind 99.6 6.7E-15 2.3E-19 130.0 10.1 73 372-444 11-83 (102)
59 2do4_A Squamous cell carcinoma 99.6 7.3E-15 2.5E-19 129.3 10.3 81 372-457 16-96 (100)
60 2cpf_A RNA binding motif prote 99.6 5.7E-15 1.9E-19 129.5 9.5 82 372-457 4-88 (98)
61 3ns6_A Eukaryotic translation 99.6 3.3E-15 1.1E-19 131.5 7.9 70 373-442 6-81 (100)
62 1x5u_A Splicing factor 3B subu 99.6 5.7E-15 1.9E-19 131.2 9.4 71 372-442 14-84 (105)
63 2lkz_A RNA-binding protein 5; 99.6 1.6E-15 5.4E-20 131.9 5.1 80 196-275 9-94 (95)
64 1x4c_A Splicing factor, argini 99.6 1.2E-14 4.2E-19 129.8 11.1 79 372-457 14-93 (108)
65 1x4b_A Heterogeneous nuclear r 99.6 1.4E-14 4.7E-19 131.3 11.5 84 369-457 23-106 (116)
66 3q2s_C Cleavage and polyadenyl 99.6 2.7E-15 9.1E-20 152.7 7.5 79 195-273 67-147 (229)
67 2x1f_A MRNA 3'-END-processing 99.6 6.8E-15 2.3E-19 128.5 9.1 80 373-456 2-81 (96)
68 2lxi_A RNA-binding protein 10; 99.6 1.5E-15 5.2E-20 131.2 4.9 81 197-277 2-84 (91)
69 2cqc_A Arginine/serine-rich sp 99.6 1.3E-14 4.3E-19 126.4 10.7 81 371-455 13-93 (95)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5.9E-15 2E-19 125.6 8.2 71 372-442 6-76 (85)
71 3p5t_L Cleavage and polyadenyl 99.6 2.4E-15 8.1E-20 129.8 5.8 71 374-444 2-74 (90)
72 2d9p_A Polyadenylate-binding p 99.6 8.8E-15 3E-19 129.5 9.5 69 372-442 14-82 (103)
73 1x4h_A RNA-binding protein 28; 99.6 1.3E-14 4.5E-19 130.2 10.7 82 372-457 14-101 (111)
74 2cph_A RNA binding motif prote 99.6 1.1E-14 3.7E-19 129.8 10.1 72 372-443 14-87 (107)
75 3lqv_A PRE-mRNA branch site pr 99.6 5.8E-15 2E-19 133.5 8.3 103 195-302 7-109 (115)
76 3ucg_A Polyadenylate-binding p 99.6 1.2E-14 4E-19 125.0 9.8 80 372-456 5-84 (89)
77 2dgu_A Heterogeneous nuclear r 99.6 1.6E-14 5.4E-19 127.9 10.9 75 372-458 10-84 (103)
78 2dgp_A Bruno-like 4, RNA bindi 99.6 6.3E-15 2.2E-19 131.2 8.3 69 372-440 12-80 (106)
79 2cpe_A RNA-binding protein EWS 99.6 8E-15 2.7E-19 132.1 9.0 82 372-457 14-103 (113)
80 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-14 3.8E-19 129.1 9.7 80 372-457 14-94 (104)
81 2dng_A Eukaryotic translation 99.5 1.2E-14 4E-19 128.8 9.6 79 372-456 14-92 (103)
82 2e5h_A Zinc finger CCHC-type a 99.5 9.5E-15 3.2E-19 126.9 8.7 71 372-442 15-85 (94)
83 1s79_A Lupus LA protein; RRM, 99.5 1.3E-14 4.4E-19 128.3 9.5 77 372-450 10-86 (103)
84 2dh8_A DAZ-associated protein 99.5 1.5E-14 5E-19 128.6 9.7 82 372-458 15-96 (105)
85 3p5t_L Cleavage and polyadenyl 99.5 4.1E-15 1.4E-19 128.2 5.9 80 197-276 2-83 (90)
86 2dnh_A Bruno-like 5, RNA bindi 99.5 2.3E-14 7.7E-19 127.3 10.9 70 372-442 14-83 (105)
87 1p27_B RNA-binding protein 8A; 99.5 1.6E-14 5.5E-19 128.5 9.9 73 372-444 22-94 (106)
88 1oo0_B CG8781-PA, drosophila Y 99.5 1.1E-14 3.8E-19 130.6 8.9 82 371-456 24-105 (110)
89 4f25_A Polyadenylate-binding p 99.5 1.2E-14 3.9E-19 131.6 9.0 78 373-456 5-82 (115)
90 2dhg_A TRNA selenocysteine ass 99.5 1.4E-14 4.8E-19 128.4 9.2 80 372-456 8-89 (104)
91 2cq0_A Eukaryotic translation 99.5 1.4E-14 4.9E-19 128.1 9.2 83 194-276 13-95 (103)
92 3md1_A Nuclear and cytoplasmic 99.5 1.7E-14 5.9E-19 122.1 9.3 80 197-276 2-81 (83)
93 2dnz_A Probable RNA-binding pr 99.5 2E-14 6.8E-19 125.2 9.9 82 195-276 4-85 (95)
94 2x1f_A MRNA 3'-END-processing 99.5 1.1E-14 3.7E-19 127.2 8.1 86 196-281 2-87 (96)
95 2do0_A HnRNP M, heterogeneous 99.5 4.3E-14 1.5E-18 127.5 12.2 79 372-455 14-92 (114)
96 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.3E-14 4.6E-19 124.0 8.3 81 195-275 5-85 (87)
97 2kxn_B Transformer-2 protein h 99.5 1.3E-14 4.5E-19 133.9 8.8 81 372-456 45-125 (129)
98 2jrs_A RNA-binding protein 39; 99.5 2E-14 7E-19 128.3 9.7 74 371-444 24-97 (108)
99 2la6_A RNA-binding protein FUS 99.5 2.2E-14 7.4E-19 126.0 9.5 75 371-445 11-93 (99)
100 1whw_A Hypothetical protein ri 99.5 1.8E-14 6.1E-19 126.5 8.8 84 194-277 6-89 (99)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.5E-14 5E-19 123.2 7.9 80 194-273 5-84 (85)
102 3ns6_A Eukaryotic translation 99.5 6.6E-15 2.2E-19 129.6 5.8 79 196-274 6-91 (100)
103 1sjq_A Polypyrimidine tract-bi 99.5 1.9E-14 6.4E-19 126.5 8.7 77 372-458 15-93 (105)
104 1x4a_A Splicing factor, argini 99.5 3.4E-14 1.2E-18 127.1 10.5 79 372-457 21-99 (109)
105 4a8x_A RNA-binding protein wit 99.5 1.4E-14 4.6E-19 124.2 7.5 70 373-442 4-74 (88)
106 1x5u_A Splicing factor 3B subu 99.5 2.3E-14 7.8E-19 127.3 9.1 83 194-276 13-95 (105)
107 2cq3_A RNA-binding protein 9; 99.5 5.2E-14 1.8E-18 124.5 11.3 80 371-456 13-92 (103)
108 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.2E-14 1.4E-18 125.1 10.7 79 372-456 14-92 (103)
109 2dgs_A DAZ-associated protein 99.5 3.3E-14 1.1E-18 124.8 9.9 82 194-276 8-89 (99)
110 1p1t_A Cleavage stimulation fa 99.5 1.9E-14 6.4E-19 127.6 8.3 74 371-444 6-79 (104)
111 2ywk_A Putative RNA-binding pr 99.5 3.1E-14 1.1E-18 123.9 9.6 71 371-442 14-84 (95)
112 2e5h_A Zinc finger CCHC-type a 99.5 2.4E-14 8.3E-19 124.3 8.8 80 194-273 14-93 (94)
113 2cqc_A Arginine/serine-rich sp 99.5 2.5E-14 8.5E-19 124.5 8.8 81 195-275 14-94 (95)
114 2dgo_A Cytotoxic granule-assoc 99.5 3.3E-14 1.1E-18 128.5 9.7 83 194-276 13-95 (115)
115 2dnm_A SRP46 splicing factor; 99.5 1.7E-14 5.9E-19 127.6 7.6 83 194-276 11-93 (103)
116 1s79_A Lupus LA protein; RRM, 99.5 1.9E-14 6.6E-19 127.1 7.9 78 194-273 9-86 (103)
117 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.7E-14 5.7E-19 139.4 8.1 82 193-274 69-150 (165)
118 2cpz_A CUG triplet repeat RNA- 99.5 2.5E-14 8.5E-19 129.3 8.7 82 195-276 24-105 (115)
119 1wez_A HnRNP H', FTP-3, hetero 99.5 1.1E-14 3.8E-19 128.6 6.2 70 372-444 14-83 (102)
120 3n9u_C Cleavage and polyadenyl 99.5 2.4E-14 8.2E-19 136.6 8.8 71 372-442 54-126 (156)
121 2dgv_A HnRNP M, heterogeneous 99.5 3E-14 1E-18 123.2 8.6 70 372-443 7-76 (92)
122 3beg_B Splicing factor, argini 99.5 2E-14 6.9E-19 129.9 7.8 78 372-456 15-93 (115)
123 3ulh_A THO complex subunit 4; 99.5 3E-14 1E-18 127.0 8.7 71 372-443 28-98 (107)
124 2cqp_A RNA-binding protein 12; 99.5 1.3E-14 4.6E-19 127.0 6.2 70 373-442 15-84 (98)
125 2jwn_A Embryonic polyadenylate 99.5 3.8E-14 1.3E-18 129.9 9.5 83 369-456 32-114 (124)
126 2cpf_A RNA binding motif prote 99.5 2.8E-14 9.6E-19 125.0 8.2 82 195-276 4-88 (98)
127 1x5t_A Splicing factor 3B subu 99.5 2.4E-14 8.1E-19 124.9 7.7 82 195-276 4-86 (96)
128 1x4e_A RNA binding motif, sing 99.5 2.9E-14 9.9E-19 121.4 8.1 80 195-274 4-83 (85)
129 3ucg_A Polyadenylate-binding p 99.5 4.3E-14 1.5E-18 121.4 9.2 80 196-276 6-85 (89)
130 1x5s_A Cold-inducible RNA-bind 99.5 1.8E-14 6.2E-19 127.2 7.0 83 194-276 10-92 (102)
131 2cqg_A TDP-43, TAR DNA-binding 99.5 7.5E-14 2.6E-18 123.5 10.9 80 372-457 14-93 (103)
132 3r27_A HnRNP L, heterogeneous 99.5 3.2E-14 1.1E-18 123.8 8.3 75 372-456 20-96 (100)
133 2cq4_A RNA binding motif prote 99.5 2.3E-14 7.9E-19 129.3 7.8 80 371-455 23-102 (114)
134 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.8E-14 6.2E-19 127.2 6.9 83 194-276 10-92 (102)
135 2i2y_A Fusion protein consists 99.5 2.8E-14 9.5E-19 135.5 8.5 117 234-362 9-148 (150)
136 2do4_A Squamous cell carcinoma 99.5 4.1E-14 1.4E-18 124.4 9.0 82 194-276 15-96 (100)
137 2wbr_A GW182, gawky, LD47780P; 99.5 3.9E-14 1.3E-18 118.8 8.2 73 195-273 6-78 (89)
138 1p27_B RNA-binding protein 8A; 99.5 3.8E-14 1.3E-18 126.1 8.7 82 194-275 21-102 (106)
139 1x4h_A RNA-binding protein 28; 99.5 4.3E-14 1.5E-18 126.8 9.1 83 194-276 13-101 (111)
140 2cph_A RNA binding motif prote 99.5 4.4E-14 1.5E-18 125.9 9.1 84 194-277 13-98 (107)
141 2dgx_A KIAA0430 protein; RRM d 99.5 5E-14 1.7E-18 123.0 9.2 77 373-456 9-89 (96)
142 1x4d_A Matrin 3; structural ge 99.5 2.1E-14 7.3E-19 126.1 6.8 75 372-456 14-91 (102)
143 2ek1_A RNA-binding protein 12; 99.5 1.6E-14 5.4E-19 125.8 6.0 70 373-442 15-84 (95)
144 2krb_A Eukaryotic translation 99.5 2.2E-14 7.6E-19 121.0 6.6 68 374-443 2-75 (81)
145 2khc_A Testis-specific RNP-typ 99.5 2.9E-14 9.8E-19 129.5 7.8 74 371-444 38-111 (118)
146 2hvz_A Splicing factor, argini 99.5 2E-14 6.8E-19 126.7 6.6 84 197-285 1-100 (101)
147 2kxn_B Transformer-2 protein h 99.5 4.5E-14 1.5E-18 130.3 9.2 83 194-276 44-126 (129)
148 2jrs_A RNA-binding protein 39; 99.5 4.4E-14 1.5E-18 126.1 8.9 83 194-276 24-106 (108)
149 2lcw_A RNA-binding protein FUS 99.2 2E-15 6.8E-20 136.9 0.0 81 372-456 6-94 (116)
150 2div_A TRNA selenocysteine ass 99.5 4.8E-14 1.6E-18 123.8 8.9 83 194-276 7-94 (99)
151 2mss_A Protein (musashi1); RNA 99.5 2.7E-14 9.1E-19 118.5 6.7 70 375-445 1-70 (75)
152 3s7r_A Heterogeneous nuclear r 99.5 6.2E-14 2.1E-18 119.8 9.2 70 372-442 10-79 (87)
153 2dng_A Eukaryotic translation 99.5 6.7E-14 2.3E-18 123.8 9.7 81 194-276 13-93 (103)
154 2ywk_A Putative RNA-binding pr 99.5 5E-14 1.7E-18 122.6 8.7 80 194-274 14-93 (95)
155 2cqd_A RNA-binding region cont 99.5 6.3E-14 2.2E-18 126.9 9.6 81 194-275 15-95 (116)
156 1x4e_A RNA binding motif, sing 99.5 9.6E-15 3.3E-19 124.4 3.9 71 372-442 4-74 (85)
157 2dhg_A TRNA selenocysteine ass 99.5 7.6E-14 2.6E-18 123.7 9.8 82 194-276 7-90 (104)
158 2fy1_A RNA-binding motif prote 99.5 5.6E-14 1.9E-18 127.2 9.1 82 194-276 5-86 (116)
159 2d9p_A Polyadenylate-binding p 99.5 5.9E-14 2E-18 124.2 9.0 81 194-276 13-93 (103)
160 2khc_A Testis-specific RNP-typ 99.5 4.7E-14 1.6E-18 128.1 8.6 80 194-273 38-117 (118)
161 2mss_A Protein (musashi1); RNA 99.5 2.8E-14 9.7E-19 118.3 6.5 75 198-273 1-75 (75)
162 3s7r_A Heterogeneous nuclear r 99.5 5.1E-14 1.7E-18 120.4 8.3 80 193-273 8-87 (87)
163 1wi8_A EIF-4B, eukaryotic tran 99.5 6.5E-14 2.2E-18 124.1 9.2 80 195-276 14-94 (104)
164 2la6_A RNA-binding protein FUS 99.5 5.2E-14 1.8E-18 123.6 8.4 80 194-273 11-98 (99)
165 2cpe_A RNA-binding protein EWS 99.5 4.7E-14 1.6E-18 127.1 8.2 83 194-276 13-103 (113)
166 2rs2_A Musashi-1, RNA-binding 99.5 7.3E-14 2.5E-18 124.9 9.3 81 371-456 23-103 (109)
167 2dgp_A Bruno-like 4, RNA bindi 99.5 3.8E-14 1.3E-18 126.1 7.4 83 194-276 11-96 (106)
168 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.8E-18 120.8 10.9 76 370-457 12-89 (99)
169 3n9u_C Cleavage and polyadenyl 99.5 4.9E-14 1.7E-18 134.4 8.5 80 195-274 54-135 (156)
170 2wbr_A GW182, gawky, LD47780P; 99.5 5.2E-14 1.8E-18 118.1 7.6 63 374-442 8-70 (89)
171 2cpi_A CCR4-NOT transcription 99.5 4.9E-14 1.7E-18 126.5 7.9 81 373-457 15-101 (111)
172 3ulh_A THO complex subunit 4; 99.5 6.1E-14 2.1E-18 124.9 8.5 79 194-273 27-105 (107)
173 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.7E-14 9.1E-19 119.1 5.7 72 374-446 1-72 (77)
174 3ex7_B RNA-binding protein 8A; 99.5 5.4E-14 1.9E-18 129.3 8.3 81 194-274 20-100 (126)
175 2hgn_A Heterogeneous nuclear r 99.5 1.2E-14 4.2E-19 135.3 4.0 70 372-444 45-114 (139)
176 1oo0_B CG8781-PA, drosophila Y 99.5 6.5E-14 2.2E-18 125.5 8.5 82 194-275 24-105 (110)
177 2dnh_A Bruno-like 5, RNA bindi 99.5 7.2E-14 2.5E-18 124.0 8.7 82 194-276 13-97 (105)
178 2fc8_A NCL protein; structure 99.5 7.6E-14 2.6E-18 123.2 8.8 79 372-457 14-92 (102)
179 2cq1_A PTB-like protein L; RRM 99.5 1.2E-13 4.2E-18 121.3 10.0 75 372-456 14-90 (101)
180 2dgw_A Probable RNA-binding pr 99.5 8.5E-14 2.9E-18 120.1 8.8 77 373-456 10-86 (91)
181 2dgt_A RNA-binding protein 30; 99.5 1.2E-13 4.3E-18 119.4 9.9 74 372-457 9-82 (92)
182 1x5o_A RNA binding motif, sing 99.5 6.9E-14 2.3E-18 126.2 8.6 84 372-456 24-111 (114)
183 1sjq_A Polypyrimidine tract-bi 99.5 9.1E-14 3.1E-18 122.2 9.1 78 193-276 13-92 (105)
184 2dh8_A DAZ-associated protein 99.5 6.1E-14 2.1E-18 124.5 8.1 82 194-276 14-95 (105)
185 4a8x_A RNA-binding protein wit 99.5 4.4E-14 1.5E-18 121.0 6.8 81 195-275 3-84 (88)
186 2dgv_A HnRNP M, heterogeneous 99.5 1.2E-13 4.2E-18 119.3 9.7 81 194-276 6-86 (92)
187 1wex_A Hypothetical protein (r 99.5 1.3E-13 4.6E-18 121.8 10.0 65 372-442 14-80 (104)
188 2krb_A Eukaryotic translation 99.5 8E-14 2.7E-18 117.5 8.2 73 197-271 2-81 (81)
189 2fc9_A NCL protein; structure 99.5 7.8E-14 2.7E-18 122.9 8.3 78 372-457 14-91 (101)
190 2dnq_A RNA-binding protein 4B; 99.5 1.3E-13 4.3E-18 118.8 9.4 73 372-456 7-79 (90)
191 2m2b_A RNA-binding protein 10; 99.5 3.4E-14 1.2E-18 131.6 6.2 73 371-444 21-99 (131)
192 2jvr_A Nucleolar protein 3; RN 99.5 6.1E-14 2.1E-18 125.4 7.6 65 374-442 29-94 (111)
193 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.2E-14 1.1E-18 118.6 5.3 76 197-273 1-76 (77)
194 1why_A Hypothetical protein ri 99.5 9.8E-14 3.3E-18 121.3 8.7 77 372-456 16-92 (97)
195 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.6E-14 8.9E-19 125.8 5.0 72 371-444 17-89 (100)
196 2ek1_A RNA-binding protein 12; 99.5 3.5E-14 1.2E-18 123.6 5.7 80 195-274 14-93 (95)
197 2dnp_A RNA-binding protein 14; 99.5 1.2E-13 4.2E-18 118.9 9.0 74 372-457 8-81 (90)
198 2ad9_A Polypyrimidine tract-bi 99.5 8.7E-14 3E-18 125.5 8.3 65 372-442 30-96 (119)
199 2cq3_A RNA-binding protein 9; 99.5 1.7E-13 5.7E-18 121.2 10.1 81 194-276 13-93 (103)
200 1h2v_Z 20 kDa nuclear CAP bind 99.5 9.3E-14 3.2E-18 132.8 9.0 83 194-276 37-119 (156)
201 2cpi_A CCR4-NOT transcription 99.5 9.2E-14 3.1E-18 124.8 8.4 87 194-280 13-105 (111)
202 1p1t_A Cleavage stimulation fa 99.5 5.8E-14 2E-18 124.4 7.0 81 196-276 8-88 (104)
203 2j76_E EIF-4B, EIF4B, eukaryot 99.5 8E-14 2.7E-18 122.6 7.8 81 194-276 17-98 (100)
204 2cqp_A RNA-binding protein 12; 99.5 4.3E-14 1.5E-18 123.8 6.0 81 195-275 14-94 (98)
205 1wg5_A Heterogeneous nuclear r 99.5 1E-13 3.5E-18 122.9 8.4 77 372-452 14-91 (104)
206 2nlw_A Eukaryotic translation 99.5 7.6E-14 2.6E-18 123.9 7.4 68 373-442 15-88 (105)
207 2cq4_A RNA binding motif prote 99.5 5.6E-14 1.9E-18 126.8 6.6 77 196-273 25-101 (114)
208 1wg5_A Heterogeneous nuclear r 99.5 1.4E-13 4.9E-18 121.9 8.9 81 194-276 13-94 (104)
209 2do0_A HnRNP M, heterogeneous 99.5 1.5E-13 5E-18 124.0 9.1 81 194-275 13-93 (114)
210 2dgx_A KIAA0430 protein; RRM d 99.5 1E-13 3.6E-18 120.9 7.8 79 195-276 8-90 (96)
211 2ki2_A SS-DNA binding protein 99.5 3.7E-14 1.3E-18 122.1 4.9 73 374-447 2-74 (90)
212 2kt5_A RNA and export factor-b 99.4 1.4E-13 4.9E-18 126.1 9.0 71 371-442 33-103 (124)
213 2rs2_A Musashi-1, RNA-binding 99.4 1.5E-13 5.2E-18 122.8 8.9 82 193-275 22-103 (109)
214 2cpx_A Hypothetical protein FL 99.4 4.3E-14 1.5E-18 127.7 5.4 72 372-443 24-95 (115)
215 2kvi_A Nuclear polyadenylated 99.4 1.6E-13 5.5E-18 119.7 8.8 71 372-450 9-80 (96)
216 1x4g_A Nucleolysin TIAR; struc 99.4 2.2E-13 7.4E-18 121.9 9.8 76 372-457 24-99 (109)
217 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.6E-13 8.9E-18 127.0 10.8 73 370-442 60-132 (140)
218 2err_A Ataxin-2-binding protei 99.4 1E-13 3.6E-18 124.0 7.7 80 371-456 27-106 (109)
219 2cpy_A RNA-binding protein 12; 99.4 1.9E-14 6.6E-19 129.9 2.9 69 372-442 14-83 (114)
220 2hvz_A Splicing factor, argini 99.4 2.3E-13 7.9E-18 119.8 9.8 66 374-444 1-66 (101)
221 2dnn_A RNA-binding protein 12; 99.4 1.2E-13 4E-18 123.2 7.9 68 372-442 15-82 (109)
222 2m2b_A RNA-binding protein 10; 99.4 5.9E-14 2E-18 130.0 6.2 81 195-276 22-108 (131)
223 2dis_A Unnamed protein product 99.4 1.6E-13 5.5E-18 122.6 8.9 70 373-442 8-81 (109)
224 1iqt_A AUF1, heterogeneous nuc 99.4 6.7E-14 2.3E-18 116.0 5.9 72 375-447 1-72 (75)
225 1x4b_A Heterogeneous nuclear r 99.4 1.5E-13 5E-18 124.5 8.5 80 196-276 27-106 (116)
226 2cpj_A Non-POU domain-containi 99.4 1.7E-13 5.9E-18 120.2 8.7 66 371-442 13-78 (99)
227 1wez_A HnRNP H', FTP-3, hetero 99.4 9.5E-14 3.3E-18 122.5 7.0 78 194-274 13-90 (102)
228 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.8E-13 6.2E-18 121.0 8.8 81 194-276 13-93 (103)
229 2kt5_A RNA and export factor-b 99.4 1.8E-13 6.1E-18 125.5 8.9 83 194-277 33-115 (124)
230 2jwn_A Embryonic polyadenylate 99.4 1.2E-13 4E-18 126.7 7.7 81 195-276 35-115 (124)
231 1u6f_A Tcubp1, RNA-binding pro 99.4 1.2E-13 4.2E-18 129.2 7.8 82 195-276 41-122 (139)
232 1x4d_A Matrin 3; structural ge 99.4 1E-13 3.4E-18 121.8 6.7 80 195-280 14-96 (102)
233 1x4a_A Splicing factor, argini 99.4 3.2E-13 1.1E-17 120.8 10.1 80 194-276 20-99 (109)
234 2ki2_A SS-DNA binding protein 99.4 4.7E-14 1.6E-18 121.4 4.5 79 197-276 2-80 (90)
235 2cpy_A RNA-binding protein 12; 99.4 9.1E-14 3.1E-18 125.4 6.4 78 194-273 13-91 (114)
236 2cpj_A Non-POU domain-containi 99.4 1.7E-13 5.7E-18 120.3 7.8 84 194-283 13-96 (99)
237 2dis_A Unnamed protein product 99.4 1.8E-13 6.3E-18 122.3 8.2 83 194-276 6-92 (109)
238 1wf1_A RNA-binding protein RAL 99.4 3.6E-13 1.2E-17 120.6 10.0 92 351-456 7-99 (110)
239 2cqg_A TDP-43, TAR DNA-binding 99.4 3E-13 1E-17 119.6 9.4 81 194-276 13-93 (103)
240 1wel_A RNA-binding protein 12; 99.4 5E-14 1.7E-18 129.2 4.5 75 372-447 24-98 (124)
241 2dgw_A Probable RNA-binding pr 99.4 1.9E-13 6.3E-18 118.0 7.8 80 194-276 8-87 (91)
242 2lea_A Serine/arginine-rich sp 99.4 1.2E-13 4E-18 128.6 6.7 82 195-276 46-127 (135)
243 2db1_A Heterogeneous nuclear r 99.4 1.1E-13 3.8E-18 125.6 6.3 78 194-273 15-95 (118)
244 2nlw_A Eukaryotic translation 99.4 1.6E-13 5.5E-18 121.9 7.2 80 195-276 14-100 (105)
245 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.4E-13 8.2E-18 127.2 8.4 80 194-273 61-140 (140)
246 2cq2_A Hypothetical protein LO 99.4 2.5E-13 8.6E-18 121.1 8.0 79 372-456 24-105 (114)
247 1iqt_A AUF1, heterogeneous nuc 99.4 9.2E-14 3.1E-18 115.2 4.8 75 198-273 1-75 (75)
248 2dnn_A RNA-binding protein 12; 99.4 2E-13 7E-18 121.7 7.4 75 196-273 16-90 (109)
249 2db1_A Heterogeneous nuclear r 99.4 9.6E-14 3.3E-18 126.1 5.3 68 373-442 17-87 (118)
250 1fj7_A Nucleolin RBD1, protein 99.4 2.7E-14 9.3E-19 125.8 1.6 79 372-456 16-94 (101)
251 2hgl_A HNRPF protein, heteroge 99.4 1E-13 3.4E-18 128.7 5.4 70 372-443 43-115 (136)
252 1fjc_A Nucleolin RBD2, protein 99.4 1.6E-13 5.4E-18 119.7 6.3 78 371-457 14-91 (96)
253 1x4c_A Splicing factor, argini 99.4 3.9E-13 1.3E-17 120.0 9.0 76 194-276 13-93 (108)
254 2hgl_A HNRPF protein, heteroge 99.4 1.3E-13 4.3E-18 128.1 5.7 78 194-273 42-122 (136)
255 1wel_A RNA-binding protein 12; 99.4 6.6E-14 2.3E-18 128.4 3.8 79 194-273 23-101 (124)
256 2ytc_A PRE-mRNA-splicing facto 99.4 3.8E-13 1.3E-17 114.4 8.2 65 372-442 11-76 (85)
257 2cqh_A IGF-II mRNA-binding pro 99.4 2.3E-13 8E-18 117.8 7.0 75 372-457 7-83 (93)
258 1x5o_A RNA binding motif, sing 99.4 4.7E-13 1.6E-17 120.6 9.2 75 194-269 23-97 (114)
259 2lmi_A GRSF-1, G-rich sequence 99.4 1.7E-13 5.7E-18 122.2 6.0 78 194-273 9-89 (107)
260 1whx_A Hypothetical protein ri 99.4 3.5E-13 1.2E-17 120.9 8.1 71 372-448 9-79 (111)
261 2jvo_A Nucleolar protein 3; nu 99.4 4.3E-13 1.5E-17 119.7 8.6 75 371-457 29-103 (108)
262 2a3j_A U1 small nuclear ribonu 99.4 3.7E-13 1.3E-17 123.4 8.3 69 373-444 29-101 (127)
263 3zzy_A Polypyrimidine tract-bi 99.4 5.4E-13 1.8E-17 121.8 9.2 77 374-457 29-106 (130)
264 2la4_A Nuclear and cytoplasmic 99.4 2.9E-13 9.8E-18 119.2 7.0 74 373-456 27-100 (101)
265 2xnq_A Nuclear polyadenylated 99.4 6.2E-13 2.1E-17 116.2 9.0 74 371-456 20-94 (97)
266 1x4f_A Matrin 3; structural ge 99.4 2E-13 7E-18 121.6 6.0 67 372-444 24-93 (112)
267 3r27_A HnRNP L, heterogeneous 99.4 3.9E-13 1.3E-17 116.9 7.6 77 194-276 19-97 (100)
268 2f3j_A RNA and export factor b 99.4 4.5E-13 1.5E-17 130.6 8.8 77 371-448 86-162 (177)
269 2cq1_A PTB-like protein L; RRM 99.4 7E-13 2.4E-17 116.4 9.1 76 195-276 14-91 (101)
270 2err_A Ataxin-2-binding protei 99.4 3.4E-13 1.2E-17 120.6 7.3 81 194-276 27-107 (109)
271 2lmi_A GRSF-1, G-rich sequence 99.4 1.3E-13 4.6E-18 122.8 4.5 71 372-444 10-83 (107)
272 1x4f_A Matrin 3; structural ge 99.4 2.3E-13 7.8E-18 121.3 6.0 83 194-282 23-108 (112)
273 2f3j_A RNA and export factor b 99.4 3.4E-13 1.2E-17 131.4 7.7 83 194-277 86-168 (177)
274 2dnq_A RNA-binding protein 4B; 99.4 9.1E-13 3.1E-17 113.4 9.6 75 194-276 6-80 (90)
275 2hgn_A Heterogeneous nuclear r 99.4 2.1E-13 7.3E-18 126.9 6.0 80 194-276 44-123 (139)
276 1wg1_A KIAA1579 protein, homol 99.4 3.5E-13 1.2E-17 115.5 6.9 84 194-284 3-86 (88)
277 2la4_A Nuclear and cytoplasmic 99.4 9.1E-13 3.1E-17 116.0 9.7 77 193-275 24-100 (101)
278 2e5j_A Methenyltetrahydrofolat 99.4 4.5E-13 1.6E-17 117.0 7.5 67 373-444 19-85 (97)
279 2e5i_A Heterogeneous nuclear r 99.4 7.8E-13 2.7E-17 120.2 9.3 77 373-457 25-102 (124)
280 1x4g_A Nucleolysin TIAR; struc 99.4 9.3E-13 3.2E-17 117.7 9.7 81 191-277 20-100 (109)
281 3lqv_A PRE-mRNA branch site pr 99.4 7.4E-13 2.5E-17 119.6 9.0 70 372-444 7-76 (115)
282 2e5g_A U6 snRNA-specific termi 99.4 9.4E-13 3.2E-17 114.3 9.3 64 373-442 8-71 (94)
283 2dha_A FLJ20171 protein; RRM d 99.4 2.2E-13 7.6E-18 124.1 5.4 69 373-443 23-95 (123)
284 2dha_A FLJ20171 protein; RRM d 99.4 3.9E-13 1.3E-17 122.5 6.8 79 193-273 20-102 (123)
285 2ad9_A Polypyrimidine tract-bi 99.4 5.2E-13 1.8E-17 120.3 7.6 77 194-276 29-107 (119)
286 2fc9_A NCL protein; structure 99.4 6.3E-13 2.2E-17 117.0 7.8 79 194-276 13-91 (101)
287 1whx_A Hypothetical protein ri 99.4 2.2E-13 7.4E-18 122.3 4.7 84 194-285 8-91 (111)
288 2jvr_A Nucleolar protein 3; RN 99.4 3.6E-13 1.2E-17 120.4 6.1 79 193-275 25-104 (111)
289 1x5p_A Negative elongation fac 99.4 1.9E-12 6.6E-17 113.0 10.7 74 372-457 14-87 (97)
290 1nu4_A U1A RNA binding domain; 99.4 3.4E-13 1.2E-17 117.8 5.8 78 372-456 7-88 (97)
291 1why_A Hypothetical protein ri 99.4 1E-12 3.5E-17 114.7 8.6 76 195-276 16-93 (97)
292 2a3j_A U1 small nuclear ribonu 99.4 9.4E-13 3.2E-17 120.7 8.2 80 195-277 28-111 (127)
293 2ytc_A PRE-mRNA-splicing facto 99.4 1.3E-12 4.6E-17 110.9 8.6 74 194-273 10-84 (85)
294 2fc8_A NCL protein; structure 99.4 9.5E-13 3.2E-17 116.1 7.9 80 194-276 13-92 (102)
295 2hgm_A HNRPF protein, heteroge 99.4 7.2E-13 2.5E-17 121.0 7.3 77 194-273 40-118 (126)
296 1wex_A Hypothetical protein (r 99.4 1.2E-12 4E-17 115.7 8.4 76 195-276 14-91 (104)
297 1sjr_A Polypyrimidine tract-bi 99.4 1.6E-12 5.5E-17 123.2 9.9 79 373-457 46-124 (164)
298 2lcw_A RNA-binding protein FUS 99.1 5.9E-14 2E-18 127.1 0.0 83 194-276 5-95 (116)
299 2xs2_A Deleted in azoospermia- 99.4 5E-13 1.7E-17 117.9 6.0 68 372-442 8-75 (102)
300 2j8a_A Histone-lysine N-methyl 99.4 3.9E-13 1.3E-17 120.3 5.1 69 374-442 3-85 (136)
301 3beg_B Splicing factor, argini 99.4 7.8E-13 2.7E-17 119.5 7.2 71 194-271 14-84 (115)
302 2e5g_A U6 snRNA-specific termi 99.4 2.7E-12 9.1E-17 111.4 10.2 76 195-276 7-82 (94)
303 3pgw_S U1-70K; protein-RNA com 99.4 8.6E-13 2.9E-17 146.8 8.8 81 195-275 101-181 (437)
304 1fj7_A Nucleolin RBD1, protein 99.3 1.5E-13 5.2E-18 121.0 2.1 80 195-276 16-95 (101)
305 2hgm_A HNRPF protein, heteroge 99.3 7.1E-13 2.4E-17 121.0 6.2 70 372-444 41-112 (126)
306 2jvo_A Nucleolar protein 3; nu 99.3 1.8E-12 6.2E-17 115.6 8.7 78 191-276 26-103 (108)
307 2e5j_A Methenyltetrahydrofolat 99.3 1.1E-12 3.9E-17 114.5 7.1 77 195-276 18-94 (97)
308 2dnl_A Cytoplasmic polyadenyla 99.3 1.5E-12 5.2E-17 117.3 8.1 62 373-435 8-72 (114)
309 2cpx_A Hypothetical protein FL 99.3 3E-13 1E-17 122.2 3.3 82 195-276 24-105 (115)
310 3d2w_A TAR DNA-binding protein 99.3 1.2E-12 4.2E-17 112.3 7.0 75 371-456 9-83 (89)
311 2xnq_A Nuclear polyadenylated 99.3 2.7E-12 9.4E-17 112.0 9.1 77 192-276 18-95 (97)
312 1fxl_A Paraneoplastic encephal 99.3 2.3E-12 8E-17 123.8 9.5 80 373-456 2-81 (167)
313 2dgt_A RNA-binding protein 30; 99.3 1.9E-12 6.4E-17 111.9 7.8 75 194-276 8-82 (92)
314 2dnp_A RNA-binding protein 14; 99.3 1.9E-12 6.4E-17 111.4 7.7 75 194-276 7-81 (90)
315 1b7f_A Protein (SXL-lethal pro 99.3 2E-12 6.8E-17 124.6 8.7 80 373-456 3-82 (168)
316 2dgu_A Heterogeneous nuclear r 99.3 1.6E-12 5.6E-17 114.8 7.4 74 195-276 10-83 (103)
317 2dnl_A Cytoplasmic polyadenyla 99.3 1.7E-12 5.9E-17 117.0 7.3 77 194-273 6-85 (114)
318 3egn_A RNA-binding protein 40; 99.3 3.5E-13 1.2E-17 126.8 2.8 78 372-456 44-129 (143)
319 1nu4_A U1A RNA binding domain; 99.3 1E-12 3.5E-17 114.7 5.4 81 194-277 6-90 (97)
320 2cpd_A Apobec-1 stimulating pr 99.3 3.7E-12 1.3E-16 111.6 9.1 76 194-277 13-90 (99)
321 2kvi_A Nuclear polyadenylated 99.3 2.2E-12 7.6E-17 112.4 7.6 74 194-275 8-82 (96)
322 2xs2_A Deleted in azoospermia- 99.3 9.8E-13 3.3E-17 116.0 5.3 77 195-274 8-84 (102)
323 2hzc_A Splicing factor U2AF 65 99.3 2.4E-12 8.1E-17 109.9 7.3 65 372-443 5-80 (87)
324 2j8a_A Histone-lysine N-methyl 99.3 1.2E-12 4.3E-17 117.0 5.5 80 197-276 3-96 (136)
325 2pe8_A Splicing factor 45; RRM 99.3 4.5E-12 1.5E-16 112.2 8.8 72 371-442 6-83 (105)
326 1wg1_A KIAA1579 protein, homol 99.3 2.3E-12 7.8E-17 110.4 6.6 63 373-442 5-67 (88)
327 2e44_A Insulin-like growth fac 99.3 2.4E-12 8.2E-17 112.1 6.8 68 373-444 15-83 (96)
328 1fjc_A Nucleolin RBD2, protein 99.3 1E-12 3.5E-17 114.5 4.4 77 195-276 15-91 (96)
329 2diu_A KIAA0430 protein; struc 99.3 5.7E-12 2E-16 106.6 8.2 76 196-281 9-89 (96)
330 2e44_A Insulin-like growth fac 99.3 2.5E-12 8.6E-17 112.0 6.2 78 195-276 14-92 (96)
331 1wf1_A RNA-binding protein RAL 99.3 3.3E-12 1.1E-16 114.3 7.0 72 196-275 27-99 (110)
332 1wf0_A TDP-43, TAR DNA-binding 99.3 2.2E-12 7.6E-17 110.4 4.8 74 373-457 5-78 (88)
333 2diu_A KIAA0430 protein; struc 99.3 4.6E-12 1.6E-16 107.2 6.5 69 374-456 10-83 (96)
334 2hzc_A Splicing factor U2AF 65 99.3 8E-12 2.7E-16 106.5 7.9 72 194-272 4-86 (87)
335 2cqh_A IGF-II mRNA-binding pro 99.3 2.8E-12 9.5E-17 111.0 5.0 75 195-276 7-83 (93)
336 1l3k_A Heterogeneous nuclear r 99.3 8.6E-12 3E-16 123.4 9.0 71 371-442 11-81 (196)
337 2voo_A Lupus LA protein; RNA-b 99.3 1.4E-11 4.9E-16 121.7 10.5 73 370-444 106-178 (193)
338 3zzy_A Polypyrimidine tract-bi 99.3 1.3E-11 4.6E-16 112.5 9.3 78 195-277 27-107 (130)
339 1x5p_A Negative elongation fac 99.3 1.6E-11 5.6E-16 107.0 9.6 75 194-276 13-87 (97)
340 3egn_A RNA-binding protein 40; 99.3 1.2E-12 4E-17 123.2 2.4 80 194-276 43-130 (143)
341 2qfj_A FBP-interacting repress 99.3 1.6E-11 5.5E-16 123.4 10.8 84 193-276 122-205 (216)
342 2g4b_A Splicing factor U2AF 65 99.2 7.6E-12 2.6E-16 121.0 7.4 78 196-273 94-171 (172)
343 1sjr_A Polypyrimidine tract-bi 99.2 1.4E-11 4.6E-16 116.8 8.7 78 195-276 45-124 (164)
344 2e5i_A Heterogeneous nuclear r 99.2 2.7E-11 9.4E-16 110.0 9.8 75 197-277 26-103 (124)
345 3d2w_A TAR DNA-binding protein 99.2 1.3E-11 4.4E-16 105.9 6.8 76 193-275 8-83 (89)
346 2pe8_A Splicing factor 45; RRM 99.2 3.4E-11 1.1E-15 106.5 9.3 81 194-274 6-92 (105)
347 2bz2_A Negative elongation fac 99.2 1.2E-11 4.1E-16 112.6 6.5 64 372-443 38-101 (121)
348 2cjk_A Nuclear polyadenylated 99.2 9.1E-12 3.1E-16 119.8 5.9 79 196-275 87-165 (167)
349 2yh0_A Splicing factor U2AF 65 99.2 1.9E-11 6.4E-16 121.1 8.0 83 194-276 112-194 (198)
350 2cq2_A Hypothetical protein LO 99.2 1.3E-11 4.3E-16 110.1 5.9 73 195-273 24-103 (114)
351 2voo_A Lupus LA protein; RNA-b 99.2 2.2E-11 7.5E-16 120.4 8.2 79 195-275 108-186 (193)
352 1wf0_A TDP-43, TAR DNA-binding 99.2 1.5E-11 5.1E-16 105.2 5.9 75 195-276 4-78 (88)
353 3u1l_A PRE-mRNA-splicing facto 99.2 2.3E-11 7.9E-16 123.0 7.7 63 372-440 133-204 (240)
354 3v4m_A Splicing factor U2AF 65 99.2 3.7E-11 1.3E-15 106.3 6.8 73 372-444 4-88 (105)
355 2bz2_A Negative elongation fac 99.2 4.6E-11 1.6E-15 108.7 7.6 76 193-276 36-111 (121)
356 2dit_A HIV TAT specific factor 99.1 1.5E-10 5.2E-15 103.8 9.7 78 371-456 13-101 (112)
357 3ue2_A Poly(U)-binding-splicin 99.1 7E-11 2.4E-15 106.6 7.5 73 372-444 19-100 (118)
358 3pgw_A U1-A; protein-RNA compl 99.1 8.9E-11 3E-15 123.4 8.9 69 372-443 8-80 (282)
359 3u1l_A PRE-mRNA-splicing facto 99.1 9.8E-11 3.4E-15 118.5 7.6 78 193-276 131-229 (240)
360 1jmt_A Splicing factor U2AF 35 99.1 5.6E-11 1.9E-15 105.0 5.0 66 378-444 20-97 (104)
361 2dit_A HIV TAT specific factor 99.1 2.5E-10 8.4E-15 102.4 9.3 83 194-280 13-106 (112)
362 1fje_B Nucleolin RBD12, protei 99.1 1.3E-10 4.6E-15 112.6 7.6 76 195-275 98-173 (175)
363 1qm9_A Polypyrimidine tract-bi 99.0 1.8E-10 6.2E-15 114.2 6.3 67 373-444 3-70 (198)
364 3v4m_A Splicing factor U2AF 65 99.0 3.3E-10 1.1E-14 100.1 6.9 79 195-273 4-94 (105)
365 3tht_A Alkylated DNA repair pr 99.0 2.7E-10 9.2E-15 121.5 7.5 78 371-454 16-96 (345)
366 1jmt_A Splicing factor U2AF 35 99.0 1.4E-10 4.7E-15 102.5 3.4 72 201-273 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.0 6.7E-10 2.3E-14 100.2 6.9 80 194-273 18-106 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.3E-09 7.9E-14 93.5 8.9 51 382-437 26-76 (100)
369 3s6e_A RNA-binding protein 39; 98.9 2.4E-09 8E-14 95.9 7.1 70 372-445 6-85 (114)
370 1owx_A Lupus LA protein, SS-B, 98.8 3.7E-09 1.3E-13 94.8 6.7 73 371-451 16-92 (121)
371 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.2E-08 4.2E-13 88.9 9.5 64 206-276 27-90 (100)
372 3tht_A Alkylated DNA repair pr 98.7 1.6E-08 5.3E-13 107.9 7.3 65 194-264 16-82 (345)
373 3s6e_A RNA-binding protein 39; 98.7 2.7E-08 9.3E-13 88.9 6.8 74 196-273 7-90 (114)
374 1owx_A Lupus LA protein, SS-B, 98.6 8.7E-08 3E-12 85.8 7.1 72 194-271 16-91 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.5 9.2E-08 3.1E-12 80.2 5.4 70 374-456 8-85 (91)
376 3dxb_A Thioredoxin N-terminall 98.5 1.1E-06 3.7E-11 88.6 13.7 65 384-448 140-208 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.4 3.5E-07 1.2E-11 76.7 7.1 71 195-274 6-84 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.3 6.6E-07 2.3E-11 75.3 4.9 62 372-442 14-84 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.2 9.9E-07 3.4E-11 74.3 3.6 71 194-273 13-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.0 3.8E-06 1.3E-10 84.6 6.1 77 197-273 125-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.0 1.1E-05 3.7E-10 69.2 6.2 63 374-442 22-89 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.6 7.7E-05 2.6E-09 64.0 6.0 72 194-271 19-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.6 0.0004 1.4E-08 59.2 9.9 85 196-289 8-99 (104)
384 1whv_A Poly(A)-specific ribonu 96.6 0.0023 8E-08 53.8 5.4 54 374-436 17-70 (100)
385 1uw4_A UPF3X; nonsense mediate 96.6 0.0072 2.5E-07 50.9 8.0 69 197-265 2-72 (91)
386 1wwh_A Nucleoporin 35, nucleop 96.5 0.0067 2.3E-07 53.4 7.8 62 373-442 24-85 (119)
387 1uw4_A UPF3X; nonsense mediate 96.5 0.0053 1.8E-07 51.7 6.6 70 374-443 2-73 (91)
388 1wey_A Calcipressin 1; structu 96.4 0.0038 1.3E-07 53.5 5.4 73 196-274 5-82 (104)
389 2dhx_A Poly (ADP-ribose) polym 96.3 0.0071 2.4E-07 51.5 6.5 60 374-442 9-73 (104)
390 1wey_A Calcipressin 1; structu 96.3 0.0044 1.5E-07 53.1 5.0 64 374-443 6-74 (104)
391 3ctr_A Poly(A)-specific ribonu 96.0 0.0066 2.2E-07 51.3 4.6 54 374-436 7-60 (101)
392 1wwh_A Nucleoporin 35, nucleop 95.7 0.038 1.3E-06 48.7 8.3 71 195-273 23-94 (119)
393 1whv_A Poly(A)-specific ribonu 95.4 0.019 6.6E-07 48.3 5.1 53 199-259 18-70 (100)
394 2l08_A Regulator of nonsense t 95.3 0.026 8.9E-07 47.7 5.8 70 196-265 9-80 (97)
395 3ctr_A Poly(A)-specific ribonu 95.2 0.021 7E-07 48.3 4.9 53 199-259 8-60 (101)
396 2l08_A Regulator of nonsense t 93.7 0.075 2.6E-06 45.0 4.9 71 373-443 9-81 (97)
397 3pq1_A Poly(A) RNA polymerase; 92.0 0.055 1.9E-06 59.5 2.2 68 184-257 41-108 (464)
398 3pq1_A Poly(A) RNA polymerase; 91.5 0.065 2.2E-06 58.9 2.2 54 374-433 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 91.3 0.14 4.9E-06 45.6 3.7 68 374-443 8-89 (132)
400 3p3d_A Nucleoporin 53; structu 90.8 0.16 5.5E-06 45.3 3.6 76 196-273 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 70.8 5 0.00017 44.8 6.2 57 373-438 440-496 (507)
402 4eyt_A Telomerase associated p 58.4 28 0.00094 28.3 6.6 57 194-258 10-66 (129)
403 4eyt_A Telomerase associated p 57.4 20 0.00067 29.2 5.6 57 374-438 13-69 (129)
404 3d45_A Poly(A)-specific ribonu 54.4 15 0.00051 40.9 6.1 53 198-259 442-494 (507)
405 3lpe_A Putative transcription 31.4 1.4E+02 0.0049 24.4 7.2 52 223-298 40-91 (92)
406 3tj1_A RNA polymerase I-specif 27.1 13 0.00045 42.3 0.0 12 234-245 397-408 (649)
407 3iz6_V 40S ribosomal protein S 26.9 20 0.0007 30.6 1.1 15 1-15 1-15 (108)
408 3fry_A Probable copper-exporti 23.0 1.4E+02 0.0047 22.5 5.4 54 374-434 7-60 (73)
409 2g0c_A ATP-dependent RNA helic 21.1 1.8E+02 0.0062 22.5 5.8 54 385-447 13-71 (76)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.4e-37 Score=328.01 Aligned_cols=247 Identities=21% Similarity=0.341 Sum_probs=220.3
Q ss_pred HhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 191 ~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
......++|||+|||..+|+++|+++|..|| |..|.+ ++++|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 89 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV 89 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEE
Confidence 3445678999999999999999999999999 998888 456899999999999999999999999999999999
Q ss_pred cCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCC
Q 004060 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350 (776)
Q Consensus 271 ~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~ 350 (776)
.++...++|||+|||..+++++|+++|..+| .|..+.++.+ ..++.++|||||+|.+.++|.+|+..|++..+ .
T Consensus 90 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---~ 163 (284)
T 3smz_A 90 QLQPTDALLCVANLPPSLTQQQFEELVRPFG--SLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---G 163 (284)
T ss_dssp EECCCSCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred EecCCCCEEEEcCCCCcCCHHHHHHHHHhcC--CeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCCEe---C
Confidence 9999999999999999999999999999999 7889988876 35788999999999999999999999999877 4
Q ss_pred CCCceecccCCCCCCchhhhhhhhccccCCCCCCC-hHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHH
Q 004060 351 DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASW-DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (776)
Q Consensus 351 ~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (776)
++++.|.++....... .....++|||+|||..+ ++++|+++|++||.|..|.|+.+. +|+++|||||+|.+.++|.
T Consensus 164 g~~i~v~~a~~~~~~~--~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 164 PRTLYVHWTDAGQLTP--ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp TEECEEEECCGGGCCT--TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHH
T ss_pred CcEEEEEECCCCCCCc--ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHH
Confidence 8999999987654322 22356899999999995 999999999999999999999886 7899999999999999999
Q ss_pred HHHHHhCCCccCCCcceEEEEEeccCCC
Q 004060 430 TCAKSINNAELGEGDNKAKVRARLSRPL 457 (776)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (776)
+|+..|||..|.| ..+.+.++.+.
T Consensus 241 ~A~~~l~g~~~~g----~~l~v~~a~~~ 264 (284)
T 3smz_A 241 EAQQQADGLSLGG----SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHTTCEETT----EECEEEECCSS
T ss_pred HHHHHhCCCccCC----eEEEEEEecCC
Confidence 9999999999976 34555555543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.2e-37 Score=328.50 Aligned_cols=251 Identities=20% Similarity=0.316 Sum_probs=208.5
Q ss_pred HhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 191 ~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
+.....++|||+|||+.+|+++|+++|..||.|..|.|+.+..+ ++|||||+|.+.++|.+||+ |++..|.|+.|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 34566889999999999999999999999999999999987643 58999999999999999996 8999999999999
Q ss_pred cCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCC
Q 004060 271 TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV 350 (776)
Q Consensus 271 ~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~ 350 (776)
.++ ..++|||+|||..+++++|.++|..+|. .|..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+ .
T Consensus 113 ~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~-~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~ 185 (292)
T 2ghp_A 113 SHL-TECTLWMTNFPPSYTQRNIRDLLQDINV-VALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGLKI---E 185 (292)
T ss_dssp EEC-CSCEEEEECCCTTCCHHHHHHHHHHTTC-CCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---T
T ss_pred EEC-CCCEEEEECCCCCCCHHHHHHHHHHhCC-CeEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---C
Confidence 887 4679999999999999999999999992 47788887663 367899999999999999999999999887 4
Q ss_pred CCCceecccCCCCCCch--hhhhhhhccccCCCCCC-ChHHHHHHHHhhcCCeeEEEEeecCC-CCCcccEEEEEeCchH
Q 004060 351 DRPAKVSFADSFIDPGD--EIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMP-SAKRKDFGFVTFDTHD 426 (776)
Q Consensus 351 ~~~~~v~~a~~~~~~~~--~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~-~g~~~g~afV~F~~~~ 426 (776)
++.+.|.++.+...... ......++|||+|||.. +++++|+++|++||.|..|.|+.+.. |+.++|||||+|.+.+
T Consensus 186 g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp TEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 89999999876544332 23456689999999999 99999999999999999999999876 5999999999999999
Q ss_pred HHHHHHHHhCCCccCCCcceEEEEEeccCC
Q 004060 427 AAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 427 ~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
+|.+|+ .|||..|.| ..|.+.++.+
T Consensus 266 ~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp HHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred HHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 999999 999999986 4455555544
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=5.5e-27 Score=227.61 Aligned_cols=166 Identities=20% Similarity=0.403 Sum_probs=148.4
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999998876553
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
....
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 2110
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
....++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+|+..
T Consensus 86 ---------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 86 ---------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp ---------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ---------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 01127899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCccCCCcceEEEEE
Q 004060 435 INNAELGEGDNKAKVRA 451 (776)
Q Consensus 435 l~g~~~~g~~~~~~v~~ 451 (776)
|||..|.|+...+.|..
T Consensus 151 l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp HTTCCCTTCSSCCEEEE
T ss_pred hcCCEecCCCeEEEEEe
Confidence 99999988666666543
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=1.8e-26 Score=223.53 Aligned_cols=164 Identities=20% Similarity=0.411 Sum_probs=146.4
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
.++|||+|||..+++++|+++|..||.|..|.++.+..++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999888765421
Q ss_pred CCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCce
Q 004060 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (776)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~ 355 (776)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred ecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHh
Q 004060 356 VSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (776)
Q Consensus 356 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 435 (776)
....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|
T Consensus 85 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 85 --------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp --------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 011267999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCccCCCcceEEEE
Q 004060 436 NNAELGEGDNKAKVR 450 (776)
Q Consensus 436 ~g~~~~g~~~~~~v~ 450 (776)
||..|.|..+.+.|.
T Consensus 151 ~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 151 NGQKPSGATEPITVK 165 (167)
T ss_dssp TTCCCTTCSSCCEEE
T ss_pred cCCccCCCccceEEE
Confidence 999998865555554
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=1.8e-26 Score=229.99 Aligned_cols=172 Identities=27% Similarity=0.509 Sum_probs=143.5
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+|+++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4567899999999999999999999999999999999999999999999999999999999985 888899998887664
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
...... . . .
T Consensus 90 ~~~~~~---------------------------------~-------~---------------------~---------- 98 (196)
T 1l3k_A 90 VSREDS---------------------------------Q-------R---------------------P---------- 98 (196)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCcccc---------------------------------c-------c---------------------c----------
Confidence 321000 0 0 0
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.
T Consensus 99 --------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 99 --------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp ------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred --------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 000122789999999999999999999999999999999999899999999999999999999998
Q ss_pred HhCCCccCCCcceEEEEEeccCC
Q 004060 434 SINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
. ++..|.| ..|.+.++.+
T Consensus 165 ~-~~~~~~G----~~i~v~~a~~ 182 (196)
T 1l3k_A 165 Q-KYHTVNG----HNCEVRKALS 182 (196)
T ss_dssp C-SCCEETT----EECEEEECC-
T ss_pred h-CCcEECC----EEEEEEecCC
Confidence 5 7999986 3344444444
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=1.6e-26 Score=234.23 Aligned_cols=179 Identities=21% Similarity=0.443 Sum_probs=146.1
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999988654
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
..... .. .....+.
T Consensus 106 ~~~~~----------~~------------------------------------------~~~~~~~-------------- 119 (216)
T 2qfj_A 106 SNIGQ----------AQ------------------------------------------PIIDQLA-------------- 119 (216)
T ss_dssp SCCGG----------GH------------------------------------------HHHHHHH--------------
T ss_pred CCccc----------cc------------------------------------------hhhhhhh--------------
Confidence 32210 00 0000000
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
......++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+|+.
T Consensus 120 --------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 120 --------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp --------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred --------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 001123789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEEecc
Q 004060 434 SINNAELGEGDNKAKVRARLS 454 (776)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~ 454 (776)
.|||..|.|.. +.|.....
T Consensus 186 ~l~g~~~~g~~--i~V~~a~~ 204 (216)
T 2qfj_A 186 SMNLFDLGGQY--LRVGKAVT 204 (216)
T ss_dssp HHTTCBCSSSB--CEEEECSS
T ss_pred HccCCEeCCcE--EEEEEecC
Confidence 99999998633 44444433
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=1e-26 Score=235.52 Aligned_cols=180 Identities=24% Similarity=0.395 Sum_probs=150.2
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||+++|+++|+++|++||.|+.|+|+++..+++++|||||+|.+.++|.+||+.||+..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred --------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCce
Q 004060 275 --------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346 (776)
Q Consensus 275 --------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i 346 (776)
...+|||+||++.+++++|+++|..|| .|..|.|+.+. +.++|||||+|.+.++|.+|++.||+..+
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~d~---~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEET---TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcC--CeEEEEeeccC---CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999999 89999998773 45799999999999999999999999887
Q ss_pred ecCCCCCceecccCCCCCCchhhhhhhhccccCCCC
Q 004060 347 LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLP 382 (776)
Q Consensus 347 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp 382 (776)
.+++|.|.++................++..++|
T Consensus 169 ---~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 169 ---NDRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp ---TTEECEEEECCCHHHHHHHHC------------
T ss_pred ---CCEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 489999999876433322222333444444444
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=1.2e-25 Score=227.49 Aligned_cols=169 Identities=21% Similarity=0.351 Sum_probs=143.6
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCC
Q 004060 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (776)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (776)
..+.++|||+|||+++|+++|+++|++|| .|..|.|+.+ ..+++++|||||+|.+.++|.+|+..+++..+ .++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~ 85 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAG--PILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGK 85 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCc
Confidence 34567999999999999999999999999 8999999987 46789999999999999999999999998877 378
Q ss_pred CceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHH
Q 004060 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 353 ~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
.+.+.++..... ......++|||+|||..+|+++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|++||
T Consensus 86 ~i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 86 PVRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp ECEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHH
T ss_pred cccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHH
Confidence 888887754322 223345789999999999999999999999999999999884 457999999999999999999
Q ss_pred HHhCCCccCCCcceEEEEEeccCC
Q 004060 433 KSINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
+.|||..|.| ..|.+.++.+
T Consensus 161 ~~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 161 EKMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHHTTCEETT----EECEEEECCC
T ss_pred HHhCCCEECC----EEEEEEEcCC
Confidence 9999999987 3344444444
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=5.9e-26 Score=220.21 Aligned_cols=155 Identities=25% Similarity=0.518 Sum_probs=136.6
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
+.++|||+|||.++|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+.. ...|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467899999999999999999999999999999999999999999999999999999999995 457888877665431
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
...
T Consensus 80 ~~~----------------------------------------------------------------------------- 82 (167)
T 2cjk_A 80 PRD----------------------------------------------------------------------------- 82 (167)
T ss_dssp CHH-----------------------------------------------------------------------------
T ss_pred chh-----------------------------------------------------------------------------
Confidence 100
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
.....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++
T Consensus 83 --------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~- 147 (167)
T 2cjk_A 83 --------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 147 (167)
T ss_dssp --------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-
T ss_pred --------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-
Confidence 00112689999999999999999999999999999999998899999999999999999999998
Q ss_pred hCCCccCCC
Q 004060 435 INNAELGEG 443 (776)
Q Consensus 435 l~g~~~~g~ 443 (776)
||+..|.|.
T Consensus 148 ~~~~~~~g~ 156 (167)
T 2cjk_A 148 NKFIDFKDR 156 (167)
T ss_dssp CSEECSSSS
T ss_pred CCCEEeCCe
Confidence 899999873
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-25 Score=214.84 Aligned_cols=164 Identities=21% Similarity=0.402 Sum_probs=144.9
Q ss_pred CcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCcee
Q 004060 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (776)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v 356 (776)
++|||+|||.++++++|+++|+.+| .|..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+ .++.+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGG--PIANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGS--CEEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcC--CeEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---CCCeeEE
Confidence 4799999999999999999999999 79999998774 467899999999999999999999999988 4899999
Q ss_pred cccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhC
Q 004060 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (776)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (776)
.++...... .....++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||
T Consensus 74 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 74 NWAFQSQQS---SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp EECCCCCCC---CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEcCCCCCC---CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 988665432 22345899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCcceEEEEEecc
Q 004060 437 NAELGEGDNKAKVRARLS 454 (776)
Q Consensus 437 g~~~~g~~~~~~v~~~~~ 454 (776)
|..|.| ..+.+.++
T Consensus 151 g~~~~g----~~i~v~~a 164 (166)
T 3md3_A 151 GQDLNG----RPLRINWA 164 (166)
T ss_dssp TCEETT----EECEEEES
T ss_pred CCccCC----cEEEEEec
Confidence 999986 34444444
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=6.3e-25 Score=214.43 Aligned_cols=168 Identities=26% Similarity=0.504 Sum_probs=145.2
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCC--CcceEEEEeecchHHHHHHHHHHcCCceecCCCC
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEG--MNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g--~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (776)
+.++|||+|||+++++++|+++|.++| .|..|.++.+. .++ .++|||||+|.+.++|.+|++.|++..+..+..+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG--AVYEINVLRDR-SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEEC-SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecC-CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 457899999999999999999999999 79999998874 333 7899999999999999999999999888766678
Q ss_pred CceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHH
Q 004060 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 353 ~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
.+.+.++...... ....++|||+|||..+|+++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+|+
T Consensus 79 ~~~~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 79 PIQMKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp CCEEEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred ceEEccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 8888877654433 2345899999999999999999999999999999999985 6899999999999999999999
Q ss_pred HHhCCCccCCC-cceEEEE
Q 004060 433 KSINNAELGEG-DNKAKVR 450 (776)
Q Consensus 433 ~~l~g~~~~g~-~~~~~v~ 450 (776)
+.|||..+.++ ...+.|.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEE
T ss_pred HHhcCCcccCCCCCCeEEE
Confidence 99999988753 2344443
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=4.1e-25 Score=215.80 Aligned_cols=162 Identities=28% Similarity=0.534 Sum_probs=145.3
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCC--CCcceEEEEeccHHHHHHHhhhccCceec---Ccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTK--KNKGFAFLRFATVEQARQAVTELKNPVIN---GKQCG 269 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg--~~~g~afV~F~s~e~A~~Al~~l~~~~l~---gr~i~ 269 (776)
+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998877 89999999999999999999999998765 45666
Q ss_pred ccCCC-------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHc
Q 004060 270 VTPSQ-------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (776)
Q Consensus 270 V~~a~-------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~ 342 (776)
+.++. ..++|||+|||..+++++|+++|++|| .|..+.++.+. ++.++|||||+|.+.++|.+|++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 65442 457899999999999999999999999 79999998873 58899999999999999999999999
Q ss_pred CCceecCCCCCceecccC
Q 004060 343 KRDVLFGVDRPAKVSFAD 360 (776)
Q Consensus 343 ~~~i~~~~~~~~~v~~a~ 360 (776)
+..+..+.+++|.|.|++
T Consensus 158 g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTTCSSCCEEEECC
T ss_pred CCcccCCCCCCeEEEecC
Confidence 998876667999998874
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=2.2e-24 Score=210.20 Aligned_cols=150 Identities=22% Similarity=0.497 Sum_probs=132.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccC----C-------ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCcee
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l 263 (776)
+.++|||+|||..+|+++|+++|++| | .|..+.+. .++|||||+|.+.++|.+|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46789999999999999999999999 6 67777765 34899999999999999999 7999999
Q ss_pred cCccccccCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcC
Q 004060 264 NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (776)
Q Consensus 264 ~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (776)
.|+.|.|.++..... .
T Consensus 76 ~g~~i~v~~~~~~~~-------------------------------------~--------------------------- 91 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP-------------------------------------L--------------------------- 91 (172)
T ss_dssp TTEECEEECCSSCCC-------------------------------------C---------------------------
T ss_pred cCceeeecCCcccCC-------------------------------------C---------------------------
Confidence 999988865422100 0
Q ss_pred CceecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeC
Q 004060 344 RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423 (776)
Q Consensus 344 ~~i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 423 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.
T Consensus 92 ---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 144 (172)
T 2g4b_A 92 ---------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 144 (172)
T ss_dssp ---------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred ---------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeC
Confidence 00288999999999999999999999999999999999889999999999999
Q ss_pred chHHHHHHHHHhCCCccCC
Q 004060 424 THDAAVTCAKSINNAELGE 442 (776)
Q Consensus 424 ~~~~A~~A~~~l~g~~~~g 442 (776)
+.++|.+|++.|||..|.|
T Consensus 145 ~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 145 DINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp STTHHHHHHHHHTTCEETT
T ss_pred CHHHHHHHHHHcCCCEECC
Confidence 9999999999999999987
No 14
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-24 Score=209.02 Aligned_cols=157 Identities=25% Similarity=0.487 Sum_probs=143.7
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC--
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-- 274 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~-- 274 (776)
++|||+|||..+|+++|+++|++||.|..|.|+.+.. ++++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4799999999999999999999999999999998864 7789999999999999999999999999999999997763
Q ss_pred ------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceec
Q 004060 275 ------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348 (776)
Q Consensus 275 ------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~ 348 (776)
...+|||+|||..+++++|+++|+.+| .|..+.++.+ ..++.++|+|||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 346899999999999999999999999 7899999877 35788999999999999999999999999887
Q ss_pred CCCCCceecccC
Q 004060 349 GVDRPAKVSFAD 360 (776)
Q Consensus 349 ~~~~~~~v~~a~ 360 (776)
.+++|.|.|+.
T Consensus 155 -~g~~i~v~~a~ 165 (166)
T 3md3_A 155 -NGRPLRINWAA 165 (166)
T ss_dssp -TTEECEEEESC
T ss_pred -CCcEEEEEecC
Confidence 48999999875
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.91 E-value=5e-24 Score=212.68 Aligned_cols=181 Identities=20% Similarity=0.394 Sum_probs=140.8
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccC----C-------ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCcee
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l 263 (776)
..++|||+|||+.+|+++|+++|.+| | .|..+.+ +.++|||||+|.+.++|.+|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35789999999999999999999999 5 5666655 356899999999999999999 7999999
Q ss_pred cCccccccCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcC
Q 004060 264 NGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (776)
Q Consensus 264 ~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (776)
.|+.|.|.++......... ... . .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~------------------------------~~~-~-------------------------~ 99 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM------------------------------SEN-P-------------------------S 99 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS------------------------------SSC-S-------------------------S
T ss_pred cCceEEEeCCCCCCCCCCC------------------------------cCC-C-------------------------c
Confidence 9999999876443210000 000 0 0
Q ss_pred CceecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeC
Q 004060 344 RDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423 (776)
Q Consensus 344 ~~i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 423 (776)
... .+. .........++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.
T Consensus 100 ~~~---~~~------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 100 VYV---PGV------------VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp CCC---TTS------------SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred CCC---CCC------------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEEC
Confidence 000 000 00001123489999999999999999999999999999999999889999999999999
Q ss_pred chHHHHHHHHHhCCCccCCCcceEEEEEeccCCC
Q 004060 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRPL 457 (776)
Q Consensus 424 ~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (776)
+.++|.+|++.|||..|.| ..+.+.++.+.
T Consensus 165 ~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 165 DINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp SSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred CHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 9999999999999999986 45555666553
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.91 E-value=1.6e-24 Score=217.42 Aligned_cols=164 Identities=15% Similarity=0.207 Sum_probs=137.3
Q ss_pred CCCcccccCcc-ccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 275 DSDTLFLGNIC-KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 275 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
++++|||+||+ +.+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|.+|++.|++..+. +++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G--~v~~v~i~~~~------~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~ 71 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG--NVEKVKFMKSK------PGAAMVEMADGYAVDRAITHLNNNFMF---GQK 71 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTS--CEEEEEECTTS------TTCEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC--CeEEEEEecCC------CCEEEEEECCHHHHHHHHHHhCCCEEC---Cce
Confidence 45789999999 8999999999999999 89999998652 799999999999999999999998884 899
Q ss_pred ceecccCCCCCCc--------------------------------hhhhhhhhccccCCCCCCChHHHHHHHHhhcCCe-
Q 004060 354 AKVSFADSFIDPG--------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEI- 400 (776)
Q Consensus 354 ~~v~~a~~~~~~~--------------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v- 400 (776)
|.|.++....... ..+..+.++|||+|||+.+|+++|+++|++||.|
T Consensus 72 l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 72 MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 9999875322100 0011234689999999999999999999999999
Q ss_pred -eEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 401 -TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 401 -~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.+......+.+
T Consensus 152 ~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 152 PTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred eEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 899998774 5567999999999999999999999999988654444433
No 17
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.91 E-value=9.1e-25 Score=213.71 Aligned_cols=164 Identities=18% Similarity=0.332 Sum_probs=136.5
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
....++|||+|||..+|+++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 345788999999999999999999999998766 334445678899999999999999999995 999999999998877
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCC
Q 004060 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (776)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~ 352 (776)
+.....
T Consensus 88 ~~~~~~-------------------------------------------------------------------------- 93 (175)
T 1fje_B 88 PKGRDS-------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCSSC--------------------------------------------------------------------------
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 643210
Q ss_pred CceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHH
Q 004060 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (776)
Q Consensus 353 ~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (776)
......++|||+|||..+++++|+++|++||.|..| ..++.++|||||+|.+.++|.+|+
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 000123899999999999999999999999987665 457899999999999999999999
Q ss_pred HHhCCCccCCCcceEEEEEeccCC
Q 004060 433 KSINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
..|||..|.| ..|.+.++.+
T Consensus 154 ~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 154 EEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHTEEEETT----EEEEEEECSS
T ss_pred HHhCCCEECC----eEEEEEecCC
Confidence 9999999986 4466666654
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=1.7e-23 Score=221.17 Aligned_cols=237 Identities=15% Similarity=0.213 Sum_probs=140.7
Q ss_pred cCcceEEEcCCCcCCcHHHHH----HhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~----~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
...++|||+|||+.+|+++|+ ++|.+||.|..|+|+. +++++|||||+|.+.++|.+||+.||+..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 457789999999999999976 8999999999999885 678999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeec-----chHHHHHHHHHHcCC
Q 004060 270 VTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS-----SRSDAMDAFKRLQKR 344 (776)
Q Consensus 270 V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~-----s~e~A~~Al~~l~~~ 344 (776)
|.++.....+...... ...+......-.... ....................+.+.-. ....+...+..+.+.
T Consensus 84 v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKG-TFVERDRKREKRKPK--SQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEeccCcchhhhhcC-Ccccchhhhhhhhcc--ccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9988554432221111 111000000000000 00000000000000000000000000 000000000000000
Q ss_pred ceecC-CCC-----CceecccCC------------CCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEe
Q 004060 345 DVLFG-VDR-----PAKVSFADS------------FIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELA 406 (776)
Q Consensus 345 ~i~~~-~~~-----~~~v~~a~~------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 406 (776)
.-... .+. .....+... ..........+.++|||+|||..+++++|+++|++||.|..|.|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00000 000 000000000 000001122345889999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccC
Q 004060 407 RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (776)
Q Consensus 407 ~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (776)
.+. +|||||+|.+.++|.+||..|||..|.
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 663 589999999999999999999999998
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=6.6e-23 Score=214.16 Aligned_cols=159 Identities=26% Similarity=0.483 Sum_probs=145.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+++|+++|+++|..||.|..|.|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4467899999999999999999999999999999964 3799999999999999999999999999999999999
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCc-eecCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD-VLFGVDR 352 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~-i~~~~~~ 352 (776)
.+..+|||+|||..+|+++|+++|..|| .|..|.|+.+ .++.++|||||+|.+.++|.+|+..|++.. +....++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFG--PVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcC--CeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 9999999999999999999999999999 8999999988 478899999999999999999999995544 4455688
Q ss_pred CceecccCCC
Q 004060 353 PAKVSFADSF 362 (776)
Q Consensus 353 ~~~v~~a~~~ 362 (776)
++.|.++...
T Consensus 170 ~i~v~~~~~~ 179 (261)
T 3sde_A 170 PVIVEPMEQF 179 (261)
T ss_dssp BCEEEECCCE
T ss_pred eEEEeecccc
Confidence 9999988654
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=5.8e-23 Score=206.07 Aligned_cols=156 Identities=24% Similarity=0.296 Sum_probs=131.7
Q ss_pred CcceEEEcCCC-cCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLD-KDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp-~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..++|||+||| +.+++++|+++|.+||.|..|+|+.+ .+|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 89999999999999999999999864 3799999999999999999999999999999999765
Q ss_pred C-------------------------------------------CCCcccccCccccccHHHHHHHHhhcCCcceeEeEe
Q 004060 274 Q-------------------------------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310 (776)
Q Consensus 274 ~-------------------------------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l 310 (776)
. +.++|||+|||+++++++|+++|++||.+.+..+.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 2 123599999999999999999999999432378888
Q ss_pred eecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCC-CCCceecc
Q 004060 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGV-DRPAKVSF 358 (776)
Q Consensus 311 ~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~-~~~~~v~~ 358 (776)
+.+. +..+|+|||+|.+.++|.+|+..||+..+.-.. ..++.|.+
T Consensus 158 ~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 158 FSGK---SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 7653 445699999999999999999999999874221 23444443
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=9.5e-23 Score=203.63 Aligned_cols=183 Identities=19% Similarity=0.359 Sum_probs=135.9
Q ss_pred cceEEEcCCCc-CCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 196 EFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 196 ~~tlfV~nLp~-~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
.++|||+|||. .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999998753 7899999999999999999999999999999998875
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCc
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~ 354 (776)
..... ++..... ..+..+. |... .. .+
T Consensus 78 ~~~~~----~~~~~~~-------------------------~~~~~~~-----~~~~-------------~~----~r-- 104 (198)
T 1qm9_A 78 HQNVQ----LPREGQE-------------------------DQGLTKD-----YGNS-------------PL----HR-- 104 (198)
T ss_dssp CCSCC----CSSSSSS-------------------------SSSCEEE-----SSCC-------------CT----TS--
T ss_pred CCCcC----CCCcCCc-------------------------ccccccc-----ccCC-------------ch----hh--
Confidence 44311 1100000 0000000 0000 00 00
Q ss_pred eecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
+.............+.++|||+|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|.+|+.
T Consensus 105 ---~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 105 ---FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp ---SSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHH
T ss_pred ---ccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHH
Confidence 00000000011123458999999999999999999999999 99999997642 7899999999999999999
Q ss_pred HhCCCccC-CCc
Q 004060 434 SINNAELG-EGD 444 (776)
Q Consensus 434 ~l~g~~~~-g~~ 444 (776)
.|||..|. +..
T Consensus 177 ~l~g~~~~~g~~ 188 (198)
T 1qm9_A 177 DLHNHDLGENHH 188 (198)
T ss_dssp HHTSSCCSSCCS
T ss_pred HhcCCccCCCCe
Confidence 99999997 533
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.88 E-value=2.1e-22 Score=206.09 Aligned_cols=166 Identities=16% Similarity=0.327 Sum_probs=138.2
Q ss_pred cCCCCCCcccccCccc-cccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecC
Q 004060 271 TPSQDSDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (776)
Q Consensus 271 ~~a~~~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~ 349 (776)
......++|||+|||. .+++++|+++|+.|| .|..|.|+.+. +|||||+|.+.++|.+|++.|++..+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G--~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~--- 97 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYG--DVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL--- 97 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHT--CEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC---
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE---
Confidence 3446678999999999 999999999999999 79999998763 78999999999999999999999877
Q ss_pred CCCCceecccCCCCCCc------------------------------hhhhhhhhccccCCCCCCChHHHHHHHHhhcC-
Q 004060 350 VDRPAKVSFADSFIDPG------------------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYG- 398 (776)
Q Consensus 350 ~~~~~~v~~a~~~~~~~------------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G- 398 (776)
.++.|.|.++....... .....+.++|||+|||..+++++|+++|.+||
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 48999998886431100 01123358899999999999999999999999
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccC-CCcceEEEEEeccCC
Q 004060 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG-EGDNKAKVRARLSRP 456 (776)
Q Consensus 399 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~~~~~v~~~~~~~ 456 (776)
.|..|.|+.. .+|||||+|.+.++|.+|+..|||..|. + ..+.+.++++
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~~ 227 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSKS 227 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECSS
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEecC
Confidence 9999999653 2789999999999999999999999997 5 2344455443
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=7.2e-23 Score=213.84 Aligned_cols=159 Identities=21% Similarity=0.325 Sum_probs=136.6
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCC
Q 004060 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (776)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (776)
...++|||+|||+++|+++|+++|..|| .|..|.+.+. +|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~ 87 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYG--EPSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL---KSRP 87 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGC--CCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE---CCce
Confidence 3446899999999999999999999999 7888888654 89999999999999999999999887 4899
Q ss_pred ceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 354 ~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
+.|.++.. .++|||+|||..+|+++|+++|.+||.|..|.|+.+ .+|+++|||||+|.+.++|.+||.
T Consensus 88 l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 88 LRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp CEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred eEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH
Confidence 99998864 378999999999999999999999999999999999 589999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEEeccCC
Q 004060 434 SINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
.||+..+........|.+.++.+
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCC
T ss_pred HhcCCeEEecCCCceEEEeeccc
Confidence 99655443212234455555443
No 24
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.88 E-value=4.6e-22 Score=210.37 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=150.8
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|..||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C---------CCCcccccCccccc-cHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcC
Q 004060 274 Q---------DSDTLFLGNICKTW-TKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (776)
Q Consensus 274 ~---------~~~~l~V~nLp~~~-te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~ 343 (776)
. ..++|||+|||..+ ++++|+++|..|| .|..+.|+.+. ++.++|+|||+|.+.++|.+|+..|++
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC--CeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 3 34689999999995 9999999999999 78888888774 688999999999999999999999999
Q ss_pred CceecCCCCCceecccCCCCC
Q 004060 344 RDVLFGVDRPAKVSFADSFID 364 (776)
Q Consensus 344 ~~i~~~~~~~~~v~~a~~~~~ 364 (776)
..+ .+++|.|.|+.+...
T Consensus 249 ~~~---~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 LSL---GGSHLRVSFCAPGPP 266 (284)
T ss_dssp CEE---TTEECEEEECCSSSC
T ss_pred Ccc---CCeEEEEEEecCCCc
Confidence 988 489999999977544
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=9.7e-22 Score=201.16 Aligned_cols=155 Identities=27% Similarity=0.381 Sum_probs=137.5
Q ss_pred cCcceEEEcCCCc-CCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 194 RKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~-~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
...++|||+|||. .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4578899999999 99999999999999999999999764 78999999999999999999999999999999976
Q ss_pred CCC-----------------------------------------CCcccccCccccccHHHHHHHHhhcCCcceeEeEee
Q 004060 273 SQD-----------------------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLV 311 (776)
Q Consensus 273 a~~-----------------------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~ 311 (776)
+.. .++|||+|||..+++++|+++|..+|. .|..|.++
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-~i~~v~i~ 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-VVKGFKFF 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC-CEEEEEEC
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC-CeeEEEEE
Confidence 632 367999999999999999999999982 47788876
Q ss_pred ecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCC
Q 004060 312 EDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (776)
Q Consensus 312 ~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~ 362 (776)
.. .+++|||+|.+.++|.+|+..|++..+. .+++|.|.|+.+.
T Consensus 186 ~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~--~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK------DRKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLRVSFSKST 228 (229)
T ss_dssp SS------STTCEEEEESSHHHHHHHHHHHTTCBSS--SSCBCEEEECSSC
T ss_pred EC------CCcEEEEEECCHHHHHHHHHHHCCCccC--CCCeEEEEEecCC
Confidence 53 2789999999999999999999998772 3899999998763
No 26
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=6.8e-22 Score=209.97 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=139.4
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..++|||+|||..+++++|+++|..|| .|..|.|+.+.. +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 577899999999999999999999999 999999998765 788999999999999999999999999999999999875
Q ss_pred C-------------CCCcccccCcccc-ccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHH
Q 004060 274 Q-------------DSDTLFLGNICKT-WTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (776)
Q Consensus 274 ~-------------~~~~l~V~nLp~~-~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~ 339 (776)
. ..++|||+|||.. +++++|+++|..|| .|..|.|+.+...++.++|||||+|.+.++|.+|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFG--SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS--CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccC--CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 3 2478999999999 99999999999999 89999998764335889999999999999999999
Q ss_pred HHcCCceecCCCCCceecccCCC
Q 004060 340 RLQKRDVLFGVDRPAKVSFADSF 362 (776)
Q Consensus 340 ~l~~~~i~~~~~~~~~v~~a~~~ 362 (776)
.|++..+ .+++|.|.|+.+.
T Consensus 272 ~l~g~~~---~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLL---GNREISVSLADKK 291 (292)
T ss_dssp GGTTEEE---TTEEEEEEECCCC
T ss_pred HhcCCEE---CCcEEEEEEecCC
Confidence 9999876 4899999998753
No 27
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2.1e-18 Score=165.59 Aligned_cols=142 Identities=17% Similarity=0.265 Sum_probs=104.3
Q ss_pred eEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceec----CCCCCceecccCC-CCCCchhhhhhhhccccCCCC
Q 004060 308 LTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF----GVDRPAKVSFADS-FIDPGDEIMAQVKTVFVDGLP 382 (776)
Q Consensus 308 i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~----~~~~~~~v~~a~~-~~~~~~~~~~~~~~l~V~nLp 382 (776)
+.|+.+. .+++|||||+|.+.++|++|++.+++..... ..+.......... ............++|||+|||
T Consensus 3 ~kl~ln~---~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILNG---KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEC---SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEecC---ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 4454442 3579999999999999999998876432110 0011111111111 111112223446899999999
Q ss_pred CCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEeccCC
Q 004060 383 ASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 383 ~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..+.+.++++
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 149 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARY 149 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCC
Confidence 999999999999999999999999999899999999999999999999999999999986 3344445444
No 28
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=2e-18 Score=192.14 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=73.0
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+.++|||+|||+.||+++|+++|.+||.|+.|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----r~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG----RRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC----EEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999986 33444
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++.+
T Consensus 177 ~~a~~ 181 (437)
T 3pgw_S 177 DVERG 181 (437)
T ss_pred EEeCC
Confidence 44444
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=2.5e-17 Score=149.21 Aligned_cols=95 Identities=22% Similarity=0.418 Sum_probs=72.0
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
..+|||+|||+.+++++|+++|.+||.|..|+|+.+. +.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999875 44799999999999999999999999999999999987632
Q ss_pred --------------CCcccccCccccccHHH
Q 004060 276 --------------SDTLFLGNICKTWTKEA 292 (776)
Q Consensus 276 --------------~~~l~V~nLp~~~te~~ 292 (776)
.++|||+|||+.+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 25799999999998763
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=6.1e-17 Score=142.33 Aligned_cols=81 Identities=25% Similarity=0.467 Sum_probs=74.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||.++|+++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|++||+.|||..|.| ..+.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999999987 45556
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.+++|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 66665
No 31
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=7.4e-17 Score=153.41 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=99.5
Q ss_pred CCCcceEEEEeecchHHHHHHHHHH-cCCceecCCCCCceecccCCCC-----------CCchhhhhhhhccccCCCCCC
Q 004060 317 EGMNRGFAFLEFSSRSDAMDAFKRL-QKRDVLFGVDRPAKVSFADSFI-----------DPGDEIMAQVKTVFVDGLPAS 384 (776)
Q Consensus 317 ~g~~kg~afV~F~s~e~A~~Al~~l-~~~~i~~~~~~~~~v~~a~~~~-----------~~~~~~~~~~~~l~V~nLp~~ 384 (776)
....+|+++|+|.+.++|++|++.+ ++..+. + .+.+.++.... ..........++|||+|||+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~---G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVD---G-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCC---C-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCC---C-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 3456899999999999999999999 777663 5 77777765421 112233445689999999999
Q ss_pred ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 385 WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 385 ~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+||..|||..|.|..
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 999999999999999999999876 4899999999999999999999999998733
No 32
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=1.7e-16 Score=152.01 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=73.7
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++||+.||+..|.+ ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986 3444
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+.++++
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 455544
No 33
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=139.89 Aligned_cols=83 Identities=23% Similarity=0.427 Sum_probs=78.6
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
--..++|||+|||.++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004060 273 SQD 275 (776)
Q Consensus 273 a~~ 275 (776)
+.+
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 754
No 34
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=7.1e-17 Score=164.37 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=68.9
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
.++|||+||++.+|+++|+++|.+|| .|+.|.|++++.+++++|||||+|.+.++|++||+.||+..|.+..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 37899999999999999999999999 99999999999999999999999999999999999999999997443
No 35
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=4.8e-16 Score=144.82 Aligned_cols=113 Identities=16% Similarity=0.259 Sum_probs=71.7
Q ss_pred eEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCCCchhhhhhhhccccCCCCCCChHHHHHHHHhhcCCee
Q 004060 322 GFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEIT 401 (776)
Q Consensus 322 g~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 401 (776)
-++|++|.+...+..|+..+++.... +. ....+..+. ......++|||+|||..+|+++|+++|++||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~---g~-~~~~~~~~~-----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQM---GR-GSMSYGRPP-----PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCSC-----SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCC---CC-CCCCcCCCC-----CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 35677888888888888888765442 11 122222221 1223458999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 402 KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 402 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
.|.|+.+..+++++|||||+|.+.++|++||..|||..|.|.
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 999999988999999999999999999999999999999874
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=8.5e-16 Score=137.68 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=68.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+.++|||+||++.+++++|+++|++||.|..|.|+.+..|++++|||||+|.+.++|++||+.|||..|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999987
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=141.97 Aligned_cols=83 Identities=19% Similarity=0.454 Sum_probs=74.5
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.|||..|.+ ..|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 115 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KRLK 115 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986 3455
Q ss_pred EeccCCC
Q 004060 451 ARLSRPL 457 (776)
Q Consensus 451 ~~~~~~~ 457 (776)
+.++++.
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 5555543
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=132.64 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=72.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.+ ..+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 34899999999999999999999999999999999999899999999999999999999999999999986 33444
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++++
T Consensus 83 ~~a~~ 87 (99)
T 1whw_A 83 LPSTI 87 (99)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 55544
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=4e-16 Score=134.89 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=71.7
Q ss_pred hccccCCCCCCChHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC-CccCCCcceEEEEE
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN-AELGEGDNKAKVRA 451 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~~~~~v~~ 451 (776)
++|||+|||.++|+++|+++|++|| .|..|.|++++.+++++|||||+|.+.++|++||+.|++ ..|.| ..|.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 7899999999999999999999999 899999999999999999999999999999999998754 56765 45666
Q ss_pred eccCCCC
Q 004060 452 RLSRPLQ 458 (776)
Q Consensus 452 ~~~~~~~ 458 (776)
.++.|+.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 6766543
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=135.20 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=71.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+|+++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+ .|.+ ..|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~~l~V 90 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----RKANV 90 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----EEEEE
Confidence 458999999999999999999999999999999999999999999999999999999999999998 7876 33444
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++.+
T Consensus 91 ~~a~~ 95 (116)
T 2cqd_A 91 NLAYL 95 (116)
T ss_dssp EESTT
T ss_pred EEccc
Confidence 44443
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=131.62 Aligned_cols=72 Identities=25% Similarity=0.488 Sum_probs=68.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 348999999999999999999999999999999999999999999999999999999999999999999873
No 42
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=133.37 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=78.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCee-EEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT-KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
..++|||+|||..+++++|+++|.+||.|. .|.|+.++.+++++|||||+|.+.++|++|++.|||..|.+....+.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 348999999999999999999999999999 9999999999999999999999999999999999999999877566677
Q ss_pred EeccCCC
Q 004060 451 ARLSRPL 457 (776)
Q Consensus 451 ~~~~~~~ 457 (776)
+.++++.
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 7777653
No 43
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=9.8e-16 Score=148.07 Aligned_cols=116 Identities=23% Similarity=0.355 Sum_probs=69.2
Q ss_pred EeecchHHHHHHHHHHcCCceecCCCCCceecccCCC---------------CCCchhhhhhhhccccCCCCCCChHHHH
Q 004060 326 LEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF---------------IDPGDEIMAQVKTVFVDGLPASWDEDRV 390 (776)
Q Consensus 326 V~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~---------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L 390 (776)
.+|.+.++|..|+..|+...... .++.+...+.... ...........++|||+|||..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~-kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHR-KGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccc-cCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 67788888888887777654421 1222332221110 0111122234578999999999999999
Q ss_pred HHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 391 RELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 391 ~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.|
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 9999999999999999999999999999999999999999999999999986
No 44
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=135.80 Aligned_cols=70 Identities=24% Similarity=0.462 Sum_probs=67.2
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
.++|||+|||..+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|++||+.|||..|.|.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4899999999999999999999999999999999997 899999999999999999999999999999874
No 45
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=1.9e-15 Score=144.93 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=106.1
Q ss_pred EEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCc-------eecCccccc------------cCCCCCCcccccCcc
Q 004060 225 EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-------VINGKQCGV------------TPSQDSDTLFLGNIC 285 (776)
Q Consensus 225 ~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~-------~l~gr~i~V------------~~a~~~~~l~V~nLp 285 (776)
.++|+.+.. .++|||||+|.+.++|++|++.+++. .+.+..... ......++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466776654 68999999999999999999887642 112221111 112345799999999
Q ss_pred ccccHHHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCCCC
Q 004060 286 KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID 364 (776)
Q Consensus 286 ~~~te~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~~~ 364 (776)
+.+++++|+++|..|| .|..|.|+.+ ..++.++|||||+|.+.++|.+|+..|++..+ .+++|.|.++.....
T Consensus 80 ~~~~~~~l~~~F~~~G--~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYG--RVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHS--CEEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcC--CeEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEEECCCCCC
Confidence 9999999999999999 7999999877 35788999999999999999999999999776 489999999976543
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=132.28 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=73.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKI-ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
..++|||+|||..+++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||..||+..|.+ ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 34899999999999999999999999999999 999998899999999999999999999999999999986 4455
Q ss_pred EeccCCC
Q 004060 451 ARLSRPL 457 (776)
Q Consensus 451 ~~~~~~~ 457 (776)
+.++.+.
T Consensus 80 v~~a~~~ 86 (96)
T 1x5t_A 80 VSYAFKK 86 (96)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 5555553
No 47
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=1.7e-15 Score=139.43 Aligned_cols=73 Identities=22% Similarity=0.371 Sum_probs=69.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.|||..|.+..
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4589999999999999999999999999999999999999999999999999999999999999999998743
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=132.75 Aligned_cols=82 Identities=21% Similarity=0.418 Sum_probs=74.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||..||+..|.+ ..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 89 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LILNV 89 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cEEEE
Confidence 44899999999999999999999999999999999999999999999999999999999999999999986 44555
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 666553
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=133.85 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=77.6
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 004060 274 QD 275 (776)
Q Consensus 274 ~~ 275 (776)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.58 E-value=1.2e-14 Score=131.32 Aligned_cols=82 Identities=21% Similarity=0.407 Sum_probs=73.9
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.+ ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 88 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 88 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345899999999999999999999999999999999998899999999999999999999999999999986 4455
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+.++++
T Consensus 89 V~~a~~ 94 (115)
T 2dgo_A 89 TNWATR 94 (115)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 555554
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=132.64 Aligned_cols=82 Identities=24% Similarity=0.535 Sum_probs=74.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+ ..+.+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V 86 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIRV 86 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 44899999999999999999999999999999999999999999999999999999999999999999986 45555
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 666553
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=132.63 Aligned_cols=78 Identities=13% Similarity=0.304 Sum_probs=69.6
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCC--eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCc----cCCCcceE
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE----LGEGDNKA 447 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~----~~g~~~~~ 447 (776)
++|||+|||+.+|+++|+++|++||. |..|.|++++.+++++|||||+|.+.++|++||+.|||.. |.| .
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G----r 85 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG----K 85 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT----E
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC----E
Confidence 79999999999999999999999995 6799999999999999999999999999999999999974 665 4
Q ss_pred EEEEeccC
Q 004060 448 KVRARLSR 455 (776)
Q Consensus 448 ~v~~~~~~ 455 (776)
.|.+.+++
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 45555554
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.58 E-value=4.9e-15 Score=125.51 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=72.3
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEec
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (776)
.+|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|+..|||..|.| ..+.+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999986 4455555
Q ss_pred cCC
Q 004060 454 SRP 456 (776)
Q Consensus 454 ~~~ 456 (776)
+++
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
No 54
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=5.2e-15 Score=133.83 Aligned_cols=82 Identities=20% Similarity=0.441 Sum_probs=74.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+ ..|.+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 99 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRLKV 99 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 44899999999999999999999999999999999999899999999999999999999999999999986 45566
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 100 ~~a~~~ 105 (115)
T 2cpz_A 100 QLKRSK 105 (115)
T ss_dssp ECCCCS
T ss_pred EEcCCC
Confidence 666654
No 55
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=130.18 Aligned_cols=71 Identities=21% Similarity=0.525 Sum_probs=67.6
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+ ||+..|.+.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 34899999999999999999999999999999999999999999999999999999999998 999999873
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=126.97 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=67.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34899999999999999999999999999999999998899999999999999999999999999999987
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=132.68 Aligned_cols=71 Identities=24% Similarity=0.426 Sum_probs=68.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.|||..|.+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999987
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=130.00 Aligned_cols=73 Identities=23% Similarity=0.516 Sum_probs=69.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|.+..
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3489999999999999999999999999999999999999999999999999999999999999999998744
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=129.28 Aligned_cols=81 Identities=20% Similarity=0.426 Sum_probs=72.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||+.||+..|.+ ..+.+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 90 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIKV 90 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 44899999999999999999999999999999999998 89999999999999999999999999999986 34555
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 555553
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=129.46 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=72.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCC---CCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP---SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
+.++|||+|||..+++++|+++|++||.|..|.|+.+.. +++++|||||+|.+.++|++||..||+..|.+ ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 348999999999999999999999999999999998876 66899999999999999999999999999986 45
Q ss_pred EEEeccCCC
Q 004060 449 VRARLSRPL 457 (776)
Q Consensus 449 v~~~~~~~~ 457 (776)
+.+.++++.
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 566666553
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=3.3e-15 Score=131.55 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=67.9
Q ss_pred hhccccCCCCC------CChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPA------SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||. .+++++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|++||+.|||..|.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 48999999999 99999999999999999999999999999999999999999999999999999999986
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=131.23 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=68.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 45899999999999999999999999999999999999899999999999999999999999999999987
No 63
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=131.91 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=74.1
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCc--eEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCc----eecCcccc
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGE--VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP----VINGKQCG 269 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~--i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~----~l~gr~i~ 269 (776)
-.||||+|||+.+|+++|+++|++||. |..|+|++++.+++++|||||+|.+.++|.+||+.||+. .|+|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 357999999999999999999999995 678999999999999999999999999999999999986 58999999
Q ss_pred ccCCCC
Q 004060 270 VTPSQD 275 (776)
Q Consensus 270 V~~a~~ 275 (776)
|.++++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 998764
No 64
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=129.82 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=67.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc-ceEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD-NKAKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-~~~~v~ 450 (776)
..++|||+|||+++|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.+.. ....|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 3489999999999999999999999999999999865 79999999999999999999999998622 224566
Q ss_pred EeccCCC
Q 004060 451 ARLSRPL 457 (776)
Q Consensus 451 ~~~~~~~ 457 (776)
+.++.+.
T Consensus 87 V~~a~~~ 93 (108)
T 1x4c_A 87 VKVDGPR 93 (108)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 6666653
No 65
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=131.28 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=75.1
Q ss_pred hhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 369 IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 369 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
.....++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||.. |+..|.| ..
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~ 97 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RV 97 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EE
Confidence 345669999999999999999999999999999999999999999999999999999999999997 9999986 45
Q ss_pred EEEeccCCC
Q 004060 449 VRARLSRPL 457 (776)
Q Consensus 449 v~~~~~~~~ 457 (776)
|.+.++.+.
T Consensus 98 l~V~~a~~~ 106 (116)
T 1x4b_A 98 VEPKRAVAR 106 (116)
T ss_dssp EEEECCSSC
T ss_pred EEEEECCCC
Confidence 666666654
No 66
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=2.7e-15 Score=152.73 Aligned_cols=79 Identities=22% Similarity=0.438 Sum_probs=74.6
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCC--ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G--~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
..++|||+|||+.+|+++|+++|.+|| .|+.|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 004060 273 S 273 (776)
Q Consensus 273 a 273 (776)
+
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 5
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.56 E-value=6.8e-15 Score=128.47 Aligned_cols=80 Identities=16% Similarity=0.436 Sum_probs=72.7
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|++.|||..|.| ..+.+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987 445555
Q ss_pred ccCC
Q 004060 453 LSRP 456 (776)
Q Consensus 453 ~~~~ 456 (776)
++.+
T Consensus 78 ~a~~ 81 (96)
T 2x1f_A 78 YSSN 81 (96)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 5544
No 68
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=131.20 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=74.9
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc-CceecCccccccCCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK-NPVINGKQCGVTPSQ 274 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~-~~~l~gr~i~V~~a~ 274 (776)
.+|||+|||.++|+++|+++|++|| .|..|+|++++.++.++|||||+|.+.++|.+||+.++ +..|.|+.|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999999999999999999999999999999874 567999999999886
Q ss_pred CCC
Q 004060 275 DSD 277 (776)
Q Consensus 275 ~~~ 277 (776)
+..
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=126.36 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=73.6
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.+ ..+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 88 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RRIR 88 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 455899999999999999999999999999999999999999999999999999999999999999999986 4455
Q ss_pred EeccC
Q 004060 451 ARLSR 455 (776)
Q Consensus 451 ~~~~~ 455 (776)
+.+++
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 55544
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=5.9e-15 Score=125.64 Aligned_cols=71 Identities=24% Similarity=0.496 Sum_probs=68.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|++.|||..|.|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 44899999999999999999999999999999999998999999999999999999999999999999987
No 71
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=2.4e-15 Score=129.76 Aligned_cols=71 Identities=15% Similarity=0.288 Sum_probs=65.6
Q ss_pred hccccCCCCCCChHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
.+|||+|||+++|+++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 5799999999999999999999999 9999999999999999999999999999999999999999998743
No 72
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.8e-15 Score=129.51 Aligned_cols=69 Identities=26% Similarity=0.527 Sum_probs=66.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|++||..||+..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4589999999999999999999999999999999988 88999999999999999999999999999986
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=130.24 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=73.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhC------CCccCCCcc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN------NAELGEGDN 445 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~------g~~~~g~~~ 445 (776)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|| +..|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g--- 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG--- 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC---
Confidence 45899999999999999999999999999999999999999999999999999999999999999 999986
Q ss_pred eEEEEEeccCCC
Q 004060 446 KAKVRARLSRPL 457 (776)
Q Consensus 446 ~~~v~~~~~~~~ 457 (776)
..+.+.++.+.
T Consensus 91 -~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 -RQLKVDLAVTR 101 (111)
T ss_dssp -CEEEEECCCCC
T ss_pred -EEEEEEECCCC
Confidence 34555555543
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=129.85 Aligned_cols=72 Identities=22% Similarity=0.481 Sum_probs=68.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeec-CCCCCcccEEEEEeCchHHHHHHHHHh-CCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN-MPSAKRKDFGFVTFDTHDAAVTCAKSI-NNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~ 443 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ ..+++++|||||+|.+.++|++||..| |+..|.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4589999999999999999999999999999999998 789999999999999999999999999 99999873
No 75
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=5.8e-15 Score=133.50 Aligned_cols=103 Identities=16% Similarity=0.304 Sum_probs=92.9
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4678999999999999999999999999999999865 4569999999999999999999999999999999999886
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCC
Q 004060 275 DSDTLFLGNICKTWTKEALKEKLKHYGV 302 (776)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~ 302 (776)
..... .+++...++++|.++|+++|.
T Consensus 84 ~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 54332 788888999999999999983
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=1.2e-14 Score=124.96 Aligned_cols=80 Identities=10% Similarity=0.321 Sum_probs=72.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|+ .||+..|.| ..+.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEE
Confidence 4589999999999999999999999999999999999999999999999999999999999 999999986 44555
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++++
T Consensus 80 ~~a~~ 84 (89)
T 3ucg_A 80 IPKRT 84 (89)
T ss_dssp EETTT
T ss_pred EEccC
Confidence 55554
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=1.6e-14 Score=127.91 Aligned_cols=75 Identities=24% Similarity=0.553 Sum_probs=65.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+.++|||+|||..+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|.+ ..+.+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 77 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG----ENIEI 77 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC----CEEEE
Confidence 45899999999999999999999999999999987 5699999999999999999999999986 44555
Q ss_pred eccCCCC
Q 004060 452 RLSRPLQ 458 (776)
Q Consensus 452 ~~~~~~~ 458 (776)
.++++..
T Consensus 78 ~~a~~~~ 84 (103)
T 2dgu_A 78 VFAKPPD 84 (103)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 5555533
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=6.3e-15 Score=131.16 Aligned_cols=69 Identities=16% Similarity=0.444 Sum_probs=66.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCcc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 458999999999999999999999999999999999999999999999999999999999999999886
No 79
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8e-15 Score=132.14 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=74.1
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
..++|||+|||..+++++|+++|.+||.|. .|.|+.++.+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 92 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG- 92 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC-
Confidence 448999999999999999999999999999 69999998999999999999999999999999999999986
Q ss_pred cceEEEEEeccCCC
Q 004060 444 DNKAKVRARLSRPL 457 (776)
Q Consensus 444 ~~~~~v~~~~~~~~ 457 (776)
..+.+.++++.
T Consensus 93 ---~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 ---SKLKVSLARKK 103 (113)
T ss_dssp ---EECEEECSSCC
T ss_pred ---CEEEEEECCCC
Confidence 45566666553
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=129.14 Aligned_cols=80 Identities=24% Similarity=0.524 Sum_probs=71.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS-AKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
+.++|||+|||..+++++|+++|.+|| |..|.|+.+..+ ++++|||||+|.+.++|++|| .||+..|.+ ..|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 87 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----KRIR 87 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----EECE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----cEEE
Confidence 448999999999999999999999999 999999999887 999999999999999999999 999999986 4455
Q ss_pred EeccCCC
Q 004060 451 ARLSRPL 457 (776)
Q Consensus 451 ~~~~~~~ 457 (776)
+.++.+.
T Consensus 88 V~~a~~~ 94 (104)
T 1wi8_A 88 VDVADQA 94 (104)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 5555543
No 81
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=128.76 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=71.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+.++|||+|||..+++++|+++|.+|| |..|.|+.+..+++++|||||+|.+.++|++|| .||+..|.+ ..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 87 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----RSLRV 87 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----EECEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----eEEEE
Confidence 348999999999999999999999997 999999999999999999999999999999999 899999986 44555
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++.+
T Consensus 88 ~~a~~ 92 (103)
T 2dng_A 88 DIAEG 92 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 55554
No 82
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.5e-15 Score=126.93 Aligned_cols=71 Identities=28% Similarity=0.553 Sum_probs=68.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|++.||+..|.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999986
No 83
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=128.29 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=70.1
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
..++|||+|||.++|+++|+++|++||.|..|.|+++.. ++++|||||+|.+.++|++||. +|+..|.|..+.+...
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 348999999999999999999999999999999999987 9999999999999999999999 9999999866555443
No 84
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=128.59 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=74.1
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||+.+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||.. |+..|.+ ..|.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~l~V 89 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RNIDP 89 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EEEBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EEEEE
Confidence 448999999999999999999999999999999999999999999999999999999999998 9999986 45666
Q ss_pred eccCCCC
Q 004060 452 RLSRPLQ 458 (776)
Q Consensus 452 ~~~~~~~ 458 (776)
.++.+..
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 6666543
No 85
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=4.1e-15 Score=128.23 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=72.5
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCC--ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G--~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
.+|||+|||+.+|+++|+++|.+|| .|..|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=2.3e-14 Score=127.30 Aligned_cols=70 Identities=21% Similarity=0.365 Sum_probs=66.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||+.|||..|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 35899999999999999999999999999999999997 79999999999999999999999999999986
No 87
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=128.51 Aligned_cols=73 Identities=22% Similarity=0.371 Sum_probs=69.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.|..
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 4589999999999999999999999999999999999999999999999999999999999999999998743
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=1.1e-14 Score=130.55 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=73.1
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..|||..|.| ..+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999999986 3444
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+.++.+
T Consensus 100 V~~a~~ 105 (110)
T 1oo0_B 100 VDWCFV 105 (110)
T ss_dssp EEESEE
T ss_pred EEEccc
Confidence 444443
No 89
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.54 E-value=1.2e-14 Score=131.56 Aligned_cols=78 Identities=23% Similarity=0.401 Sum_probs=68.3
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
.++|||+|||..+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|.| ..+.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEE
Confidence 3689999999999999999999999999999999985 4579999999999999999999999999987 334444
Q ss_pred ccCC
Q 004060 453 LSRP 456 (776)
Q Consensus 453 ~~~~ 456 (776)
++.+
T Consensus 79 ~a~~ 82 (115)
T 4f25_A 79 RFKS 82 (115)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 4443
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=128.40 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=71.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCc-cCCCcceEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKN-YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE-LGEGDNKAKV 449 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~-~~g~~~~~~v 449 (776)
+.++|||+|||..+|+++|+++|.+ ||.|..|.|+.+. +++++|||||+|.+.++|++||+.||+.. |.|.. +
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~----l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP----V 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC----C
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe----E
Confidence 3489999999999999999999999 9999999999998 99999999999999999999999999999 88633 4
Q ss_pred EEeccCC
Q 004060 450 RARLSRP 456 (776)
Q Consensus 450 ~~~~~~~ 456 (776)
.+.++.+
T Consensus 83 ~v~~a~~ 89 (104)
T 2dhg_A 83 RLSVAIP 89 (104)
T ss_dssp CCCBCCC
T ss_pred EEEEccC
Confidence 4444444
No 91
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=128.12 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=78.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 92
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=1.7e-14 Score=122.10 Aligned_cols=80 Identities=24% Similarity=0.478 Sum_probs=76.4
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~ 276 (776)
.+|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999887653
No 93
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=125.16 Aligned_cols=82 Identities=27% Similarity=0.512 Sum_probs=77.9
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..++++++||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998885
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 94
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.53 E-value=1.1e-14 Score=127.21 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=80.4
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999999877
Q ss_pred CCcccc
Q 004060 276 SDTLFL 281 (776)
Q Consensus 276 ~~~l~V 281 (776)
......
T Consensus 82 ~~~~~~ 87 (96)
T 2x1f_A 82 SDISGV 87 (96)
T ss_dssp SSGGGH
T ss_pred CCCCCc
Confidence 755443
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=127.49 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=70.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||+.||+..|.+ ..|.+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 88 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPMHV 88 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEEEE
Confidence 34899999999999999999999999999999999987 68999999999999999999999999999986 33444
Q ss_pred eccC
Q 004060 452 RLSR 455 (776)
Q Consensus 452 ~~~~ 455 (776)
.++.
T Consensus 89 ~~a~ 92 (114)
T 2do0_A 89 KMDE 92 (114)
T ss_dssp EECS
T ss_pred EEcc
Confidence 4444
No 96
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=123.97 Aligned_cols=81 Identities=23% Similarity=0.478 Sum_probs=75.9
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999998764
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.3e-14 Score=133.92 Aligned_cols=81 Identities=26% Similarity=0.390 Sum_probs=73.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|. .|.+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~----~l~V 120 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR----RIRV 120 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS----CCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE----EEEE
Confidence 458999999999999999999999999999999999999999999999999999999999999999999873 3455
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++.+
T Consensus 121 ~~a~~ 125 (129)
T 2kxn_B 121 DFSIT 125 (129)
T ss_dssp SCCSS
T ss_pred EEecC
Confidence 55544
No 98
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=128.33 Aligned_cols=74 Identities=26% Similarity=0.469 Sum_probs=69.6
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|++.|||..|.|..
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998733
No 99
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=126.03 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=70.2
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--------IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.+.++|||+|||..+++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34589999999999999999999999999999 9999999999999999999999999999999999999987
Q ss_pred Ccc
Q 004060 443 GDN 445 (776)
Q Consensus 443 ~~~ 445 (776)
..+
T Consensus 91 ~~l 93 (99)
T 2la6_A 91 NPI 93 (99)
T ss_dssp SBC
T ss_pred cEE
Confidence 443
No 100
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=126.50 Aligned_cols=84 Identities=33% Similarity=0.471 Sum_probs=78.8
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004060 274 QDSD 277 (776)
Q Consensus 274 ~~~~ 277 (776)
....
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6554
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.52 E-value=1.5e-14 Score=123.15 Aligned_cols=80 Identities=26% Similarity=0.533 Sum_probs=76.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999999899999999999999999999999999999999999999865
No 102
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.52 E-value=6.6e-15 Score=129.63 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=75.5
Q ss_pred cceEEEcCCCc------CCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC-ccc
Q 004060 196 EFEVFVGGLDK------DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQC 268 (776)
Q Consensus 196 ~~tlfV~nLp~------~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g-r~i 268 (776)
.++|||+|||. .+++++|+++|++||.|..|.|+.+..|++++|||||+|.+.++|.+||+.||+..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccCCC
Q 004060 269 GVTPSQ 274 (776)
Q Consensus 269 ~V~~a~ 274 (776)
.|.++.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 998763
No 103
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=126.55 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=66.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC--CccCCCcceEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGEGDNKAKV 449 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~~~~~v 449 (776)
+.++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|++||+.|++ ..|.| ..+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l 84 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPI 84 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC----EEE
Confidence 3489999999999999999999999999999999975 79999999999999999998874 67876 556
Q ss_pred EEeccCCCC
Q 004060 450 RARLSRPLQ 458 (776)
Q Consensus 450 ~~~~~~~~~ 458 (776)
.+.+++++.
T Consensus 85 ~V~~A~~~~ 93 (105)
T 1sjq_A 85 YIQFSNHKE 93 (105)
T ss_dssp CBCCCSSSS
T ss_pred EEEEcCCCC
Confidence 666666543
No 104
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=127.13 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=69.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+|+++|+++|.+||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+..|.+ ..|.+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V 93 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLRV 93 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 3489999999999999999999999999999999654 5679999999999999999999999999986 45666
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 94 ~~a~~~ 99 (109)
T 1x4a_A 94 EFPRSG 99 (109)
T ss_dssp ECCCCC
T ss_pred EEcccC
Confidence 666653
No 105
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=124.20 Aligned_cols=70 Identities=20% Similarity=0.427 Sum_probs=66.3
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCC-cccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK-RKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++. ++|||||+|.+.++|++|+..|||..|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 37899999999999999999999999999999999887765 89999999999999999999999999987
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=127.30 Aligned_cols=83 Identities=27% Similarity=0.432 Sum_probs=78.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 107
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.2e-14 Score=124.49 Aligned_cols=80 Identities=21% Similarity=0.429 Sum_probs=69.8
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+.. .+++||||+|.+.++|++||..||+..|.+ ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 3458999999999999999999999999999999998854 379999999999999999999999999986 4445
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+.++.+
T Consensus 87 v~~a~~ 92 (103)
T 2cq3_A 87 VNNATA 92 (103)
T ss_dssp EEECCS
T ss_pred EEEccc
Confidence 555544
No 108
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.2e-14 Score=125.14 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=69.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++||..||+..|.+ ..+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 87 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVKV 87 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEEE
Confidence 3489999999999999999999999999999999988543 68999999999999999999999999986 44555
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++++
T Consensus 88 ~~a~~ 92 (103)
T 2cqi_A 88 NWATT 92 (103)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 66655
No 109
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=124.81 Aligned_cols=82 Identities=29% Similarity=0.540 Sum_probs=77.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999999999999999999999999999999 9999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 110
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=127.59 Aligned_cols=74 Identities=19% Similarity=0.512 Sum_probs=69.9
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.|||..|.|..
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999998743
No 111
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=123.87 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=67.1
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.+.. ++++|||||+|.+.++|++||+.||+..|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3458999999999999999999999999999999999875 8999999999999999999999999999986
No 112
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=124.32 Aligned_cols=80 Identities=26% Similarity=0.472 Sum_probs=75.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999865
No 113
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=124.48 Aligned_cols=81 Identities=27% Similarity=0.487 Sum_probs=76.7
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
.
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 114
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=3.3e-14 Score=128.53 Aligned_cols=83 Identities=24% Similarity=0.514 Sum_probs=78.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 554
No 115
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=127.64 Aligned_cols=83 Identities=28% Similarity=0.458 Sum_probs=78.1
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 116
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.9e-14 Score=127.15 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=72.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+++|+++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3457899999999999999999999999999999999887 9999999999999999999999 8999999999998754
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=1.7e-14 Score=139.41 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=77.0
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
....++|||+|||+.+++++|+.+|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 004060 273 SQ 274 (776)
Q Consensus 273 a~ 274 (776)
+.
T Consensus 149 a~ 150 (165)
T 1rk8_A 149 CF 150 (165)
T ss_dssp SE
T ss_pred ec
Confidence 74
No 118
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=2.5e-14 Score=129.33 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=77.8
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..|+|+.+..++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999886
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 119
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-14 Score=128.58 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=63.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||+.+|+++|+++|.+||. +.|.|+.++ +++++|||||+|.+.++|++||+ +|+..|.+..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 3489999999999999999999999995 499999997 89999999999999999999995 8999998643
No 120
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=136.59 Aligned_cols=71 Identities=11% Similarity=0.269 Sum_probs=67.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||+++|+++|+++|.+|| .|..|.|+.++.+|+++|||||+|.+.++|++||..|||..|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 347999999999999999999999999 99999999999999999999999999999999999999999987
No 121
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=3e-14 Score=123.21 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=65.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ +++++|||||+|.+.++|++|+..||+..|.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3489999999999999999999999999999999984 788999999999999999999999999999874
No 122
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=2e-14 Score=129.92 Aligned_cols=78 Identities=19% Similarity=0.418 Sum_probs=64.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcce-EEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK-AKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~-~~v~ 450 (776)
..++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.|..+. +.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4489999999999999999999999999999999854 8999999999999999999999999985522 2234
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+....+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 444444
No 123
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=3e-14 Score=127.00 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=67.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||+.|||..|.|.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 45899999999999999999999999999999999998 999999999999999999999999999999873
No 124
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=127.04 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=67.2
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||..+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||+.|||..|.+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4889999999999999999999999999999899988999999999999999999999999999999987
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=3.8e-14 Score=129.92 Aligned_cols=83 Identities=11% Similarity=0.260 Sum_probs=73.8
Q ss_pred hhhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 369 IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 369 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
.....++|||+|||..+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|.| ..
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~ 106 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RT 106 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eE
Confidence 3345689999999999999999999999999999999999999999999999999999999999 799999986 44
Q ss_pred EEEeccCC
Q 004060 449 VRARLSRP 456 (776)
Q Consensus 449 v~~~~~~~ 456 (776)
+.+.++++
T Consensus 107 l~V~~a~~ 114 (124)
T 2jwn_A 107 IKVLPKRT 114 (124)
T ss_dssp CEEEESSC
T ss_pred EEEEECCC
Confidence 55555554
No 126
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=125.00 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=76.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCC---CCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ---TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~---tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+.. ++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999999999998876 66899999999999999999999999999999999999
Q ss_pred CCCCC
Q 004060 272 PSQDS 276 (776)
Q Consensus 272 ~a~~~ 276 (776)
++...
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 88654
No 127
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.4e-14 Score=124.93 Aligned_cols=82 Identities=23% Similarity=0.475 Sum_probs=77.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEE-EEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV-RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v-~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..++|||+|||..+++++|+++|.+||.|..| .|+.+..++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999 99999889999999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=121.37 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=75.9
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999987653
No 129
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=4.3e-14 Score=121.35 Aligned_cols=80 Identities=25% Similarity=0.538 Sum_probs=75.8
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 567999999999999999999999999999999999989999999999999999999999 8999999999999988754
Q ss_pred C
Q 004060 276 S 276 (776)
Q Consensus 276 ~ 276 (776)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 130
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-14 Score=127.21 Aligned_cols=83 Identities=30% Similarity=0.609 Sum_probs=77.7
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
No 131
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.5e-14 Score=123.49 Aligned_cols=80 Identities=20% Similarity=0.423 Sum_probs=70.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||. ++..|.| ..+.+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~l~v 87 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RWCDC 87 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eEEEE
Confidence 44899999999999999999999999999999999999999999999999999999999998 4667775 44555
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++.+.
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 665553
No 132
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=3.2e-14 Score=123.83 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=65.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCc--cCCCcceEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE--LGEGDNKAKV 449 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~~~~~v 449 (776)
+.++|||+|||..+|+++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..||+.. |.| ..+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i 89 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPA 89 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEE
Confidence 4589999999999999999999999999999999854 7999999999999999999999986 545 456
Q ss_pred EEeccCC
Q 004060 450 RARLSRP 456 (776)
Q Consensus 450 ~~~~~~~ 456 (776)
.+.+++.
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 6666654
No 133
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=129.33 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=72.0
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|| .||+..|.| ..|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999 999999986 3344
Q ss_pred EeccC
Q 004060 451 ARLSR 455 (776)
Q Consensus 451 ~~~~~ 455 (776)
+.+++
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 44444
No 134
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-14 Score=127.23 Aligned_cols=83 Identities=25% Similarity=0.512 Sum_probs=78.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 135
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=2.8e-14 Score=135.54 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=104.2
Q ss_pred CCCCcceEEEEeccHHHHHHHhhhc-cCceecCccccccCCC----------------------CCCcccccCccccccH
Q 004060 234 TKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVTPSQ----------------------DSDTLFLGNICKTWTK 290 (776)
Q Consensus 234 tg~~~g~afV~F~s~e~A~~Al~~l-~~~~l~gr~i~V~~a~----------------------~~~~l~V~nLp~~~te 290 (776)
....+|+++|+|.+.++|++|++.+ |+..|.| .|.+..+. ..++|||+|||+.+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3567999999999999999999999 9999999 88886653 3478999999999999
Q ss_pred HHHHHHHhhcCCcceeEeEeeecCCCCCCcceEEEEeecchHHHHHHHHHHcCCceecCCCCCceecccCCC
Q 004060 291 EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (776)
Q Consensus 291 ~~L~~~F~~~G~~~i~~i~l~~~~~~~g~~kg~afV~F~s~e~A~~Al~~l~~~~i~~~~~~~~~v~~a~~~ 362 (776)
++|+++|.+|| .|..|.|+.+ ++|||||+|.+.++|.+|+..|++..+ .+++|.|.|+.+.
T Consensus 88 ~~l~~~F~~~G--~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYG--PLRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHS--CEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCEEEECCCC
T ss_pred HHHHHHHHhhC--CEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEEcCCC
Confidence 99999999999 7999999865 489999999999999999999999877 4899999998764
No 136
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=124.43 Aligned_cols=82 Identities=26% Similarity=0.433 Sum_probs=76.7
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++++++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 446789999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 137
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=3.9e-14 Score=118.78 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=68.7
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
....|+|+||++.+|+++|+++|.+||+|..+++.. ++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999975 5999999999999999999999999999999999875
No 138
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.8e-14 Score=126.08 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=77.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 004060 274 QD 275 (776)
Q Consensus 274 ~~ 275 (776)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 139
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=126.83 Aligned_cols=83 Identities=28% Similarity=0.453 Sum_probs=78.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc------CceecCcc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK------NPVINGKQ 267 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~------~~~l~gr~ 267 (776)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCCCCC
Q 004060 268 CGVTPSQDS 276 (776)
Q Consensus 268 i~V~~a~~~ 276 (776)
|.|.++...
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999988554
No 140
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=125.87 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=78.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeec-CCCCCCcceEEEEeccHHHHHHHhhhc-cCceecCcccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN-PQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVT 271 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d-~~tg~~~g~afV~F~s~e~A~~Al~~l-~~~~l~gr~i~V~ 271 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 45678999999999999999999999999999999998 788999999999999999999999999 9999999999999
Q ss_pred CCCCCC
Q 004060 272 PSQDSD 277 (776)
Q Consensus 272 ~a~~~~ 277 (776)
++....
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 886554
No 141
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5e-14 Score=122.96 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=68.8
Q ss_pred hhccccCCCCCCChHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 373 VKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
.++|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ ++||||+|.+.++|++||+.|||..|.| ..
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 4799999999999999999 99999999999999988765 8899999999999999999999999986 44
Q ss_pred EEEeccCC
Q 004060 449 VRARLSRP 456 (776)
Q Consensus 449 v~~~~~~~ 456 (776)
+.+.++++
T Consensus 82 l~V~~a~~ 89 (96)
T 2dgx_A 82 ILVSLATG 89 (96)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 55555554
No 142
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.1e-14 Score=126.10 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=64.3
Q ss_pred hhhccccCCCCC-CChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCc--cCCCcceEE
Q 004060 372 QVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE--LGEGDNKAK 448 (776)
Q Consensus 372 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~~~~~ 448 (776)
+.++|||+|||+ .+|+++|+++|.+||.|..|.|+++ ++||||+|.+.++|++||+.||+.. |.| ..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~ 83 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG----KP 83 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT----EE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC----cE
Confidence 458999999999 9999999999999999999999876 6899999999999999999998754 776 34
Q ss_pred EEEeccCC
Q 004060 449 VRARLSRP 456 (776)
Q Consensus 449 v~~~~~~~ 456 (776)
|.+.+++.
T Consensus 84 l~V~~a~~ 91 (102)
T 1x4d_A 84 VRVHLSQK 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 44555543
No 143
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=1.6e-14 Score=125.76 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=67.5
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4899999999999999999999999999999999998999999999999999999999999999999987
No 144
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=120.97 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=64.0
Q ss_pred hccccCCCCCCC------hHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 374 KTVFVDGLPASW------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 374 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
++|||+|||..+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|++|++.|||..|.|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 689999999999 889999999999999999988 45889999999999999999999999999999875
No 145
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=2.9e-14 Score=129.54 Aligned_cols=74 Identities=22% Similarity=0.428 Sum_probs=69.6
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
...++|||+|||.++++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|..
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34589999999999999999999999999999999999989999999999999999999999999999998733
No 146
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=126.72 Aligned_cols=84 Identities=32% Similarity=0.497 Sum_probs=76.9
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC-
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD- 275 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~- 275 (776)
++|||+|||..+|+++|+++|++||.|..|.|+.+ +++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 689999999999999999999999999999999987732
Q ss_pred ---------------CCcccccCcc
Q 004060 276 ---------------SDTLFLGNIC 285 (776)
Q Consensus 276 ---------------~~~l~V~nLp 285 (776)
..+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4679999886
No 147
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=4.5e-14 Score=130.31 Aligned_cols=83 Identities=28% Similarity=0.457 Sum_probs=78.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 554
No 148
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=4.4e-14 Score=126.13 Aligned_cols=83 Identities=27% Similarity=0.548 Sum_probs=78.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 149
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=2e-15 Score=136.87 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=72.6
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITK--------IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.++|||+|||..+++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||..||+..|.+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG- 84 (116)
Confidence 4589999999999999999999999999998 9999998899999999999999999999999999999986
Q ss_pred cceEEEEEeccCC
Q 004060 444 DNKAKVRARLSRP 456 (776)
Q Consensus 444 ~~~~~v~~~~~~~ 456 (776)
..+.+.++++
T Consensus 85 ---~~l~V~~a~~ 94 (116)
T 2lcw_A 85 ---NPIKVSFATR 94 (116)
Confidence 3444555544
No 150
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=123.75 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=77.5
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceE-EEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcc----c
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT-EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ----C 268 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~-~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~----i 268 (776)
...++|||+|||..+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567899999999999999999999999999 9999999999999999999999999999999999999999999 8
Q ss_pred cccCCCCC
Q 004060 269 GVTPSQDS 276 (776)
Q Consensus 269 ~V~~a~~~ 276 (776)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 88877543
No 151
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.49 E-value=2.7e-14 Score=118.49 Aligned_cols=70 Identities=23% Similarity=0.476 Sum_probs=66.1
Q ss_pred ccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
+|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ ||+..|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 58999999999999999999999999999999999899999999999999999999998 99999987543
No 152
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.49 E-value=6.2e-14 Score=119.85 Aligned_cols=70 Identities=16% Similarity=0.398 Sum_probs=65.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ +++..|.|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 44899999999999999999999999999999999999999999999999999999999996 58888876
No 153
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=6.7e-14 Score=123.81 Aligned_cols=81 Identities=22% Similarity=0.496 Sum_probs=75.6
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+|| |..|.|+.+..+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3467899999999999999999999997 999999999999999999999999999999999 89999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 154
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=5e-14 Score=122.56 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=75.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+.. +.+++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3467899999999999999999999999999999999876 889999999999999999999999999999999999886
Q ss_pred C
Q 004060 274 Q 274 (776)
Q Consensus 274 ~ 274 (776)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.3e-14 Score=126.85 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=76.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++++++||||+|.+.++|.+||..|++ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 899999999887
Q ss_pred CC
Q 004060 274 QD 275 (776)
Q Consensus 274 ~~ 275 (776)
..
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 156
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.6e-15 Score=124.37 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=68.0
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.|||..|.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 34899999999999999999999999999999999999999999999999999999999999999999975
No 157
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.6e-14 Score=123.65 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=77.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhcc-CCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCce-ecCcccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQ-VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV-INGKQCGVT 271 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~-~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~-l~gr~i~V~ 271 (776)
...++|||+|||..+++++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 35678999999999999999999999 9999999999998 89999999999999999999999999999 999999999
Q ss_pred CCCCC
Q 004060 272 PSQDS 276 (776)
Q Consensus 272 ~a~~~ 276 (776)
++...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88544
No 158
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.49 E-value=5.6e-14 Score=127.18 Aligned_cols=82 Identities=28% Similarity=0.564 Sum_probs=76.7
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 159
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.9e-14 Score=124.17 Aligned_cols=81 Identities=32% Similarity=0.546 Sum_probs=75.7
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35678999999999999999999999999999999987 7899999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 544
No 160
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=4.7e-14 Score=128.10 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=76.1
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999765
No 161
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.49 E-value=2.8e-14 Score=118.31 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=71.6
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++ ||+..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999998899999999999999999999998 9999999999998764
No 162
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.49 E-value=5.1e-14 Score=120.40 Aligned_cols=80 Identities=26% Similarity=0.546 Sum_probs=73.9
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+|++ +++..|+|+.|.|..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999997 578889999999875
Q ss_pred C
Q 004060 273 S 273 (776)
Q Consensus 273 a 273 (776)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.5e-14 Score=124.11 Aligned_cols=80 Identities=23% Similarity=0.499 Sum_probs=75.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCC-CCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~t-g~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..++|||+|||+.+++++|+++|.+|| |..|.|+.+..+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 457899999999999999999999999 999999999887 999999999999999999999 89999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 544
No 164
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-14 Score=123.56 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=75.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEE--------EEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~--------v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
...++|||+|||..+++++|+++|.+||.|.. |.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45678999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccccccCC
Q 004060 266 KQCGVTPS 273 (776)
Q Consensus 266 r~i~V~~a 273 (776)
+.|.|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999765
No 165
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.7e-14 Score=127.07 Aligned_cols=83 Identities=25% Similarity=0.387 Sum_probs=78.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceE--------EEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--------EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
...++|||+|||..+++++|+++|.+||.|. .|.|+.++.+++++|||||+|.+.++|.+||+.||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4567899999999999999999999999999 69999998999999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004060 266 KQCGVTPSQDS 276 (776)
Q Consensus 266 r~i~V~~a~~~ 276 (776)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999988654
No 166
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.48 E-value=7.3e-14 Score=124.95 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=69.2
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||..+ +..|.| ..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999976 478876 3344
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+.++.+
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 444443
No 167
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=3.8e-14 Score=126.07 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=77.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCcee---cCccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI---NGKQCGV 270 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l---~gr~i~V 270 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+|++.||+..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999887 8899999
Q ss_pred cCCCCC
Q 004060 271 TPSQDS 276 (776)
Q Consensus 271 ~~a~~~ 276 (776)
.++...
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 887554
No 168
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=120.78 Aligned_cols=76 Identities=26% Similarity=0.530 Sum_probs=67.2
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 370 MAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
..+.++|||+|||..+++++|+++|.+| |.|..|.+. ++||||+|.+.++|++||..|||..|.+ .
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 79 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDG----S 79 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETT----E
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCC----c
Confidence 3456899999999999999999999999 999999876 6799999999999999999999999986 5
Q ss_pred EEEEeccCCC
Q 004060 448 KVRARLSRPL 457 (776)
Q Consensus 448 ~v~~~~~~~~ 457 (776)
.+.+.++++.
T Consensus 80 ~l~v~~a~~~ 89 (99)
T 2cpd_A 80 PIEVTLAKPV 89 (99)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 5666777654
No 169
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=134.43 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=75.6
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCC--ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G--~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
..++|||+|||+.+|+++|+++|.+|| .|..|+|+.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004060 273 SQ 274 (776)
Q Consensus 273 a~ 274 (776)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 170
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=5.2e-14 Score=118.06 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=60.1
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.-|||+||++.+|+++|+++|.+||+|..|.|.. ++|||||+|.+.++|.+|++.||+..|.+
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 6799999999999999999999999999999976 49999999999999999999999999987
No 171
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=126.54 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=71.3
Q ss_pred hhccccCCCCCCChHHHHH---HHHhhcCCeeEEEEeecCCCC---CcccEEEEEeCchHHHHHHHHHhCCCccCCCcce
Q 004060 373 VKTVFVDGLPASWDEDRVR---ELLKNYGEITKIELARNMPSA---KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (776)
.++|||+|||+.+++++|+ ++|.+||.|..|.|+.+..++ +++|||||+|.+.++|++||+.|||..|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g---- 90 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG---- 90 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC----
Confidence 4899999999999999999 999999999999999887654 456999999999999999999999999986
Q ss_pred EEEEEeccCCC
Q 004060 447 AKVRARLSRPL 457 (776)
Q Consensus 447 ~~v~~~~~~~~ 457 (776)
..+.+.++.++
T Consensus 91 r~l~V~~a~~k 101 (111)
T 2cpi_A 91 RTLKASLGTTK 101 (111)
T ss_dssp EEEEEESCCCC
T ss_pred EEEEEEecccc
Confidence 45566666554
No 172
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=6.1e-14 Score=124.94 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=75.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999998 8999999999999999999999999999999999999765
No 173
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.7e-14 Score=119.06 Aligned_cols=72 Identities=22% Similarity=0.389 Sum_probs=67.0
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcce
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (776)
++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+..++ ..|.|..+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 479999999999999999999999999999999999899999999999999999999999999 888875433
No 174
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=5.4e-14 Score=129.29 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=76.8
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred C
Q 004060 274 Q 274 (776)
Q Consensus 274 ~ 274 (776)
.
T Consensus 100 ~ 100 (126)
T 3ex7_B 100 F 100 (126)
T ss_dssp E
T ss_pred c
Confidence 4
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.2e-14 Score=135.29 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=64.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||+++|+++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|++|| .||+..|.+..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 447999999999999999999999999 77999999975 999999999999999999999 79999998743
No 176
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=6.5e-14 Score=125.49 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=77.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 004060 274 QD 275 (776)
Q Consensus 274 ~~ 275 (776)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 177
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.47 E-value=7.2e-14 Score=124.03 Aligned_cols=82 Identities=23% Similarity=0.422 Sum_probs=75.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC---ccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING---KQCGV 270 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g---r~i~V 270 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346789999999999999999999999999999999987 78999999999999999999999999999988 99999
Q ss_pred cCCCCC
Q 004060 271 TPSQDS 276 (776)
Q Consensus 271 ~~a~~~ 276 (776)
.++...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 887543
No 178
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7.6e-14 Score=123.17 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=69.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+.++|||+|||..+++++|+++|..|+ .|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+ ..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V 86 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NKVTL 86 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eEEEE
Confidence 458999999999999999999999874 68888888899999999999999999999999999999986 45566
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 87 ~~a~~~ 92 (102)
T 2fc8_A 87 DWAKPK 92 (102)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 666653
No 179
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=121.26 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=64.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhC--CCccCCCcceEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGEGDNKAKV 449 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~~~~~v 449 (776)
+.++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|++|++.|+ +..|.| ..+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l 83 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPI 83 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC----cEE
Confidence 4589999999999999999999999999999999865 8999999999999999999774 567876 445
Q ss_pred EEeccCC
Q 004060 450 RARLSRP 456 (776)
Q Consensus 450 ~~~~~~~ 456 (776)
.+.++++
T Consensus 84 ~V~~a~~ 90 (101)
T 2cq1_A 84 YIQYSNH 90 (101)
T ss_dssp EEEECSC
T ss_pred EEEEcCc
Confidence 5555554
No 180
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=8.5e-14 Score=120.13 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=68.7
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
.++|||+|||+.+++++|+++|.+| .|..|.|+.+ .+++++|||||+|.+.++|++||. ||+..|.| ..|.+.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~v~ 82 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYIEVF 82 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEEEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEEEEE
Confidence 4899999999999999999999999 9999999999 789999999999999999999999 99999986 334444
Q ss_pred ccCC
Q 004060 453 LSRP 456 (776)
Q Consensus 453 ~~~~ 456 (776)
++.+
T Consensus 83 ~a~~ 86 (91)
T 2dgw_A 83 REKS 86 (91)
T ss_dssp EESS
T ss_pred ECCc
Confidence 4443
No 181
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=119.36 Aligned_cols=74 Identities=19% Similarity=0.464 Sum_probs=65.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|++||.|..|.|+ ++||||+|.+.++|++|+..||+..|.+ ..+.+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 76 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQG----KRMHV 76 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 34899999999999999999999999999999998 4499999999999999999999999986 45566
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 77 ~~a~~~ 82 (92)
T 2dgt_A 77 QLSTSR 82 (92)
T ss_dssp EESSCC
T ss_pred EEccCC
Confidence 666553
No 182
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.9e-14 Score=126.18 Aligned_cols=84 Identities=18% Similarity=0.411 Sum_probs=72.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc----ceE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD----NKA 447 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~----~~~ 447 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|.+.. ...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 44899999999999999999999999999999999998 8999999999999999999999999999996533 123
Q ss_pred EEEEeccCC
Q 004060 448 KVRARLSRP 456 (776)
Q Consensus 448 ~v~~~~~~~ 456 (776)
.+.+.++.|
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 345555554
No 183
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.1e-14 Score=122.19 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=70.7
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc--CceecCccccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGV 270 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~--~~~l~gr~i~V 270 (776)
....++|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456788999999999999999999999999999999864 7999999999999999999886 47899999999
Q ss_pred cCCCCC
Q 004060 271 TPSQDS 276 (776)
Q Consensus 271 ~~a~~~ 276 (776)
.++...
T Consensus 87 ~~A~~~ 92 (105)
T 1sjq_A 87 QFSNHK 92 (105)
T ss_dssp CCCSSS
T ss_pred EEcCCC
Confidence 998654
No 184
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.1e-14 Score=124.51 Aligned_cols=82 Identities=27% Similarity=0.513 Sum_probs=77.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4567899999999999999999999999999999999999999999999999999999999998 999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 93 ~~~ 95 (105)
T 2dh8_A 93 TPR 95 (105)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 185
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=4.4e-14 Score=120.99 Aligned_cols=81 Identities=22% Similarity=0.474 Sum_probs=75.4
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCC-CcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK-NKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~-~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999887766 8999999999999999999999999999999999876
Q ss_pred CC
Q 004060 274 QD 275 (776)
Q Consensus 274 ~~ 275 (776)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 186
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.47 E-value=1.2e-13 Score=119.30 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=75.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+. .++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3567899999999999999999999999999999997 47889999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 187
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=121.78 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=59.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCc--cCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE--LGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g 442 (776)
+.++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.||+.. |.|
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4589999999999999999999999999999999864 7999999999999999999987654 665
No 188
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=117.51 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=68.1
Q ss_pred ceEEEcCCCcCC------cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCc-ccc
Q 004060 197 FEVFVGGLDKDV------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-QCG 269 (776)
Q Consensus 197 ~tlfV~nLp~~~------te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr-~i~ 269 (776)
++|||+|||..+ ++++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|.+|+..||+..|.|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 679999999999 789999999999999999987 46789999999999999999999999999999999 888
Q ss_pred cc
Q 004060 270 VT 271 (776)
Q Consensus 270 V~ 271 (776)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 189
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7.8e-14 Score=122.89 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=67.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.| .|+.+ .+++++|||||+|.+.++|++||..||+..|.+ ..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 85 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRL 85 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEE
Confidence 45899999999999999999999999976 55655 678999999999999999999999999999986 45566
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 86 ~~a~~~ 91 (101)
T 2fc9_A 86 ELQGPR 91 (101)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 666553
No 190
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=118.80 Aligned_cols=73 Identities=22% Similarity=0.503 Sum_probs=64.4
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++|+..||+..|.+. .+.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v 74 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV----NINV 74 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC----BCEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc----EEEE
Confidence 34899999999999999999999999999999998 67999999999999999999999999863 3444
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++++
T Consensus 75 ~~a~~ 79 (90)
T 2dnq_A 75 EASKN 79 (90)
T ss_dssp ECSSC
T ss_pred EECCC
Confidence 55544
No 191
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-14 Score=131.61 Aligned_cols=73 Identities=12% Similarity=0.248 Sum_probs=68.0
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeE--EEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCC----ccCCCc
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITK--IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA----ELGEGD 444 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~----~~~g~~ 444 (776)
...++|||+|||+.+|+++|+++|.+||.|.. |+|++++.+++++|||||+|.+. +|.+||..|||. .|.|..
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34589999999999999999999999999976 99999999999999999999999 999999999999 898744
No 192
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=6.1e-14 Score=125.38 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=60.8
Q ss_pred hccccCCCCCCChHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
++|||+|||+.+++++|+++|++|| .|..|.|... .++|||||+|.+.++|++||+.|||..|.|
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 8999999999999999999999999 8999998632 468999999999999999999999999987
No 193
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.2e-14 Score=118.61 Aligned_cols=76 Identities=28% Similarity=0.538 Sum_probs=72.4
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999998764
No 194
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.8e-14 Score=121.31 Aligned_cols=77 Identities=18% Similarity=0.433 Sum_probs=65.6
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
+.++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.||+..|.+.... +.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~--l~V 87 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR--LRV 87 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB--CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE--EEE
Confidence 3489999999999999999999999999999999854 78999999999999999999999999832233 444
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++++
T Consensus 88 ~~a~~ 92 (97)
T 1why_A 88 DFAKS 92 (97)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 45544
No 195
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=125.78 Aligned_cols=72 Identities=25% Similarity=0.521 Sum_probs=65.7
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecC-CCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM-PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
...++|||+|||..+++++|+++|++|| |..|.|+.+. .+++++|||||+|.+.++|++|| .|||..|.|..
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 3458999999999999999999999999 9999999998 68999999999999999999999 89999998743
No 196
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.46 E-value=3.5e-14 Score=123.60 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=75.2
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||+.+++++|+++|.+||.|..+.++.+..++++++||||+|.+.++|.+||+.||+..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999999999988899999999999999999999999999999999999998764
No 197
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=118.89 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=65.1
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+|+++|+++|++||.|..|.|+ ++||||+|.+.++|++||..|||..|.+ ..+.+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 75 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKG----KRINV 75 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 34899999999999999999999999999999998 4499999999999999999999999986 44555
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 555543
No 198
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.7e-14 Score=125.45 Aligned_cols=65 Identities=22% Similarity=0.350 Sum_probs=59.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC--CccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g 442 (776)
+.++|||+|||+.+|+++|+++|++||.|+.|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4589999999999999999999999999999999976 89999999999999999999885 57776
No 199
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=121.21 Aligned_cols=81 Identities=25% Similarity=0.479 Sum_probs=74.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+.. .+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4567899999999999999999999999999999998754 38999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 554
No 200
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=9.3e-14 Score=132.79 Aligned_cols=83 Identities=16% Similarity=0.341 Sum_probs=78.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+|+++|+++|.+||.|+.|.|+.+..++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 201
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.2e-14 Score=124.77 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=77.9
Q ss_pred cCcceEEEcCCCcCCcHHHHH---HhhccCCceEEEEEeecCCCC---CCcceEEEEeccHHHHHHHhhhccCceecCcc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLR---KVFSQVGEVTEVRLMMNPQTK---KNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~---~~f~~~G~i~~v~i~~d~~tg---~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~ 267 (776)
....+|||+|||+.+++++|+ ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|.+||+.||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred ccccCCCCCCccc
Q 004060 268 CGVTPSQDSDTLF 280 (776)
Q Consensus 268 i~V~~a~~~~~l~ 280 (776)
|.|.++....+.+
T Consensus 93 l~V~~a~~k~~~~ 105 (111)
T 2cpi_A 93 LKASLGTTKYCSY 105 (111)
T ss_dssp EEEESCCCCSCSS
T ss_pred EEEEecccccccc
Confidence 9999987765433
No 202
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.8e-14 Score=124.39 Aligned_cols=81 Identities=28% Similarity=0.496 Sum_probs=76.6
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 46799999999999999999999999999999999988999999999999999999999999999999999999988754
Q ss_pred C
Q 004060 276 S 276 (776)
Q Consensus 276 ~ 276 (776)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 4
No 203
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=8e-14 Score=122.63 Aligned_cols=81 Identities=21% Similarity=0.490 Sum_probs=73.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecC-CCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~-~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
...++|||+|||..+++++|+++|.+|| |..|.|+.+. .+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4568899999999999999999999999 9999999988 68999999999999999999999 8999999999999988
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7554
No 204
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.3e-14 Score=123.78 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=76.0
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||+.+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45789999999999999999999999999988888888999999999999999999999999999999999999998775
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 205
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=122.92 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=67.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
..++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. |+..|.+.. +.|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~--i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY--IEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC--CEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE--EEEE
Confidence 3489999999999999999999999999997 888888 7899999999999999999999997 999998743 4444
Q ss_pred Ee
Q 004060 451 AR 452 (776)
Q Consensus 451 ~~ 452 (776)
..
T Consensus 90 ~~ 91 (104)
T 1wg5_A 90 KS 91 (104)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 206
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=7.6e-14 Score=123.95 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=64.2
Q ss_pred hhccccCCCCCCC------hHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASW------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|++||..|||..|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 4799999999999 889999999999999999988 4688999999999999999999999999999987
No 207
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.6e-14 Score=126.80 Aligned_cols=77 Identities=27% Similarity=0.454 Sum_probs=73.7
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 467999999999999999999999999999999999999999999999999999999999 89999999999999865
No 208
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=121.94 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=73.7
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEE-EEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE-VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~-v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
...++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. ++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34678999999999999999999999999987 888887 7899999999999999999999997 99999999999977
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 6443
No 209
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=123.97 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=75.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++++++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 346789999999999999999999999999999999987 5889999999999999999999999999999999999877
Q ss_pred CC
Q 004060 274 QD 275 (776)
Q Consensus 274 ~~ 275 (776)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 210
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=120.91 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=73.5
Q ss_pred CcceEEEcCCCcCCcHHHHH----HhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~----~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+.+..+ ++||||+|.+.++|.+|++.||+..|.|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999999999999999 99999999999999988765 889999999999999999999999999999999
Q ss_pred cCCCCC
Q 004060 271 TPSQDS 276 (776)
Q Consensus 271 ~~a~~~ 276 (776)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 988554
No 211
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.45 E-value=3.7e-14 Score=122.14 Aligned_cols=73 Identities=21% Similarity=0.440 Sum_probs=68.3
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.+ |++|+..|||..|.|..+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999 99999999999998754333
No 212
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=1.4e-13 Score=126.08 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=67.8
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++|+..|||..|.|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 455899999999999999999999999999999999998 89999999999999999999999999999986
No 213
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=1.5e-13 Score=122.85 Aligned_cols=82 Identities=26% Similarity=0.477 Sum_probs=73.7
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..++ ..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999764 899999999987
Q ss_pred CCC
Q 004060 273 SQD 275 (776)
Q Consensus 273 a~~ 275 (776)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 214
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.3e-14 Score=127.70 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=61.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.++|||+|||..+|+++|+++|.+||.|..|.+..+..+++++|||||+|.+.++|++||..|||..|.+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 458999999999999999999999999994332222222788999999999999999999999999999863
No 215
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.6e-13 Score=119.70 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=63.6
Q ss_pred hhhccccCCCCC-CChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 372 QVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 372 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
+.++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||..|||..|.|..+.+.+.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 458999999998 99999999999999999999995 789999999999999999999999998755444443
No 216
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=121.88 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=67.7
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||..|||..|.| ..+.+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 93 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKC 93 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEE
Confidence 3489999999999999999999999999999999876 7899999999999999999999999986 45556
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 94 ~~a~~~ 99 (109)
T 1x4g_A 94 YWGKES 99 (109)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 666553
No 217
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=127.01 Aligned_cols=73 Identities=23% Similarity=0.482 Sum_probs=69.4
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
....++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999986
No 218
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=123.95 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=69.6
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 100 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 100 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 345899999999999999999999999999999999884 4589999999999999999999999999987 3444
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+.++++
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 444443
No 219
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.9e-14 Score=129.89 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=65.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCe-eEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEI-TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||+.+|+++|+++|.+||.| ..|.|+.+. +++++|||||+|.+.++|++||+. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 34899999999999999999999999999 899999998 999999999999999999999986 9999986
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=119.84 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=61.7
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|++.|||..|.|..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 47999999999999999999999999999999876 5899999999999999999999999998743
No 221
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=123.21 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=63.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
...+|||+|||+.+|+++|+++|++| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 45899999999999999999999999 899999999875 999999999999999999999 699999986
No 222
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=5.9e-14 Score=130.01 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=76.0
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEE--EEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCc----eecCccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP----VINGKQC 268 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~--v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~----~l~gr~i 268 (776)
...+|||+|||+.+|+++|+++|.+||.|.. |+|++++.+++++|||||+|.+. +|.+|+..||+. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 3567999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred cccCCCCC
Q 004060 269 GVTPSQDS 276 (776)
Q Consensus 269 ~V~~a~~~ 276 (776)
.|.++...
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99988654
No 223
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=122.65 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=65.6
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCC-eeEEEEe-ecCCCCCcccEEEEEeCchHHHHHHHHHhC--CCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELA-RNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g 442 (776)
.++|||+|||..+++++|+++|.+||. |..|.|+ .+..+++++|||||+|.+.++|++|+..|| +..|.|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 489999999999999999999999998 9999998 888889999999999999999999999996 578876
No 224
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.45 E-value=6.7e-14 Score=116.01 Aligned_cols=72 Identities=26% Similarity=0.518 Sum_probs=66.3
Q ss_pred ccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++ +++..|.|..+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999998 5888898754433
No 225
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=124.45 Aligned_cols=80 Identities=24% Similarity=0.527 Sum_probs=75.6
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 36799999999999999999999999999999999999999999999999999999999997 99999999999998855
Q ss_pred C
Q 004060 276 S 276 (776)
Q Consensus 276 ~ 276 (776)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=120.19 Aligned_cols=66 Identities=27% Similarity=0.553 Sum_probs=61.9
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.+.++|||+|||..+++++|+++|.+||.|..|.|+++ +|||||+|.+.++|++|++.|||..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34589999999999999999999999999999999865 7999999999999999999999999986
No 227
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=9.5e-14 Score=122.55 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=71.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+|+++|+++|.+||.| .|.|+.++ +++++|||||+|.+.++|++||+ +|+..|.++.|.|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456789999999999999999999999954 99999987 89999999999999999999995 7999999999998765
Q ss_pred C
Q 004060 274 Q 274 (776)
Q Consensus 274 ~ 274 (776)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 228
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=120.99 Aligned_cols=81 Identities=22% Similarity=0.399 Sum_probs=74.1
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..+ +++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 34678999999999999999999999999999999987543 6899999999999999999999999999999999987
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 553
No 229
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=125.48 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=77.5
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456789999999999999999999999999999999988 8999999999999999999999999999999999999987
Q ss_pred CCCC
Q 004060 274 QDSD 277 (776)
Q Consensus 274 ~~~~ 277 (776)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 230
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=1.2e-13 Score=126.65 Aligned_cols=81 Identities=25% Similarity=0.510 Sum_probs=76.2
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3578999999999999999999999999999999999889999999999999999999999 799999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 231
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=129.22 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=77.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|..||.|+.|.|+.+..+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 121 ~~ 122 (139)
T 1u6f_A 121 SG 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 232
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1e-13 Score=121.82 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=71.4
Q ss_pred CcceEEEcCCCc-CCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccC--ceecCcccccc
Q 004060 195 KEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVT 271 (776)
Q Consensus 195 ~~~tlfV~nLp~-~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~--~~l~gr~i~V~ 271 (776)
..++|||+|||+ .+|+++|+++|.+||.|+.|.|+++ ++||||+|.+.++|.+|++.||+ ..|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 467899999999 9999999999999999999999864 58999999999999999999885 46999999999
Q ss_pred CCCCCCccc
Q 004060 272 PSQDSDTLF 280 (776)
Q Consensus 272 ~a~~~~~l~ 280 (776)
++.....|.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x4d_A 88 LSQKYKRIK 96 (102)
T ss_dssp EECCCTTSS
T ss_pred ECCCCCCCC
Confidence 987665554
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.2e-13 Score=120.76 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=73.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+|+++|+++|.+||.|..|.|+.+ +.+++||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34678999999999999999999999999999999653 568999999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 554
No 234
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=4.7e-14 Score=121.44 Aligned_cols=79 Identities=29% Similarity=0.532 Sum_probs=73.6
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~ 276 (776)
++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+ |.+|+..||+..|.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999999999999999999999 99999999999999999999887554
No 235
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=9.1e-14 Score=125.42 Aligned_cols=78 Identities=13% Similarity=0.218 Sum_probs=73.1
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCce-EEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEV-TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i-~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
...++|||+|||+.+|+++|+++|..||.| ..|.|+.+. +++++|||||+|.+.++|.+||+. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 346789999999999999999999999999 899999988 899999999999999999999997 99999999999987
Q ss_pred C
Q 004060 273 S 273 (776)
Q Consensus 273 a 273 (776)
+
T Consensus 91 a 91 (114)
T 2cpy_A 91 V 91 (114)
T ss_dssp E
T ss_pred C
Confidence 5
No 236
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=120.29 Aligned_cols=84 Identities=35% Similarity=0.512 Sum_probs=77.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45678999999999999999999999999999999843 799999999999999999999999999999999999
Q ss_pred CCCCcccccC
Q 004060 274 QDSDTLFLGN 283 (776)
Q Consensus 274 ~~~~~l~V~n 283 (776)
.....+.+++
T Consensus 87 ~~~~~~~~g~ 96 (99)
T 2cpj_A 87 CHSASLTSGP 96 (99)
T ss_dssp SCCSCCCCCC
T ss_pred CCCCCCCCCC
Confidence 8888877765
No 237
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=122.25 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=76.5
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCc-eEEEEEe-ecCCCCCCcceEEEEeccHHHHHHHhhhcc--CceecCcccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLM-MNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCG 269 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~-i~~v~i~-~d~~tg~~~g~afV~F~s~e~A~~Al~~l~--~~~l~gr~i~ 269 (776)
...++|||+|||+.+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|.+|+..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred ccCCCCC
Q 004060 270 VTPSQDS 276 (776)
Q Consensus 270 V~~a~~~ 276 (776)
|.++...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9988654
No 238
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=3.6e-13 Score=120.63 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=71.9
Q ss_pred CCCceecccCCCCCCchhhhhhhhccccCCCCCC-ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHH
Q 004060 351 DRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (776)
Q Consensus 351 ~~~~~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (776)
+.++.+..+....... .....++|||+|||+. +++++|+++|.+||.|..|.| +++||||+|.+.++|+
T Consensus 7 g~~~~~~~s~~~~~~~--~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 7 GMSLKLQASNVTNKND--PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp SCCCCCCCCCSCCSCC--CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CcccccccCCCCCCCC--CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 4555555544332221 2233479999999999 999999999999999999998 3789999999999999
Q ss_pred HHHHHhCCCccCCCcceEEEEEeccCC
Q 004060 430 TCAKSINNAELGEGDNKAKVRARLSRP 456 (776)
Q Consensus 430 ~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (776)
+||..||+..|.+ ..+.+.++++
T Consensus 77 ~A~~~l~g~~~~g----~~l~V~~a~~ 99 (110)
T 1wf1_A 77 AAVLGENGRVLAG----QTLDINMAGE 99 (110)
T ss_dssp HHHHHHTTCEETT----EECCEEESCC
T ss_pred HHHHHcCCCEECC----eEEEEEECCC
Confidence 9999999999986 3445555543
No 239
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3e-13 Score=119.57 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=74.8
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||.. +..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEec
Confidence 4567899999999999999999999999999999999999999999999999999999999994 67899999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
No 240
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5e-14 Score=129.17 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=67.6
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
..++|||+|||+.+|+++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||. ||+..|.+..+.+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34899999999999999999999999999987777777899999999999999999999999 9999998754333
No 241
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=117.98 Aligned_cols=80 Identities=16% Similarity=0.323 Sum_probs=74.5
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+| .|..|.|+.+ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456789999999999999999999999 9999999998 789999999999999999999999 9999999999999877
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 543
No 242
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.43 E-value=1.2e-13 Score=128.61 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=77.4
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+|+++|+++|.+||.|+.|.|+.+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 126 ~~ 127 (135)
T 2lea_A 126 YG 127 (135)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 243
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.42 E-value=1.1e-13 Score=125.65 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=72.8
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCc---eEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~---i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
...++|||+|||+++|+++|+++|..||. |..|+|+.+.. ++++|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35678999999999999999999999999 89999999876 9999999999999999999999 9999999999998
Q ss_pred cCC
Q 004060 271 TPS 273 (776)
Q Consensus 271 ~~a 273 (776)
.++
T Consensus 93 ~~a 95 (118)
T 2db1_A 93 FKS 95 (118)
T ss_dssp EEE
T ss_pred EEC
Confidence 764
No 244
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=121.85 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=73.6
Q ss_pred CcceEEEcCCCcCC------cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCc-c
Q 004060 195 KEFEVFVGGLDKDV------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-Q 267 (776)
Q Consensus 195 ~~~tlfV~nLp~~~------te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr-~ 267 (776)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35689999999999 889999999999999999988 46789999999999999999999999999999998 9
Q ss_pred ccccCCCCC
Q 004060 268 CGVTPSQDS 276 (776)
Q Consensus 268 i~V~~a~~~ 276 (776)
|.|.++.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999887654
No 245
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=127.25 Aligned_cols=80 Identities=26% Similarity=0.533 Sum_probs=75.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
....+|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999998764
No 246
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=121.13 Aligned_cols=79 Identities=15% Similarity=0.312 Sum_probs=64.4
Q ss_pred hhhcccc--CCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCcc-CCCcceEE
Q 004060 372 QVKTVFV--DGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL-GEGDNKAK 448 (776)
Q Consensus 372 ~~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~-~g~~~~~~ 448 (776)
++++||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||+.| ..-.....
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3478999 779999999999999999999999988643 78999999999999999999999987 21112344
Q ss_pred EEEeccCC
Q 004060 449 VRARLSRP 456 (776)
Q Consensus 449 v~~~~~~~ 456 (776)
+.+.+++.
T Consensus 98 l~v~~a~~ 105 (114)
T 2cq2_A 98 LYLNFVEK 105 (114)
T ss_dssp CEEEEESC
T ss_pred EEEEeccc
Confidence 55555543
No 247
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.42 E-value=9.2e-14 Score=115.17 Aligned_cols=75 Identities=29% Similarity=0.609 Sum_probs=70.6
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999995 888999999988653
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2e-13 Score=121.65 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=69.9
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..+|||+|||+.+|+++|+++|..| .|..|.|+.+.. ++++|||||+|.+.++|.+|| .||+..|.|+.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3579999999999999999999999 899999999875 999999999999999999999 58999999999998765
No 249
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.42 E-value=9.6e-14 Score=126.06 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=64.7
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||+++|+++|+++|.+||. |..|.|+.+.. ++++|||||+|.+.++|++||+ ||+..|.+
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 488999999999999999999999999 89999999976 9999999999999999999999 99999986
No 250
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=2.7e-14 Score=125.85 Aligned_cols=79 Identities=8% Similarity=0.199 Sum_probs=68.0
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|||..+|+++|+++|.+||.|.. .++.+..+++++|||||+|.+.++|++||+ ||+..|.|. .+.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~----~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN----EIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB----CCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc----EEEE
Confidence 3489999999999999999999999999988 666776788999999999999999999999 999999863 3444
Q ss_pred eccCC
Q 004060 452 RLSRP 456 (776)
Q Consensus 452 ~~~~~ 456 (776)
.++++
T Consensus 90 ~~a~~ 94 (101)
T 1fj7_A 90 EKPKG 94 (101)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 45544
No 251
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.41 E-value=1e-13 Score=128.70 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=65.8
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
..++|||+|||+++|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++|++||+ ||+..|.+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 3489999999999999999999999999 89999999986 9999999999999999999999 999999863
No 252
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=1.6e-13 Score=119.68 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=67.3
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|.+||.|..| ..+++++|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 84 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVS 84 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 345899999999999999999999999988766 3468889999999999999999999999999986 4466
Q ss_pred EeccCCC
Q 004060 451 ARLSRPL 457 (776)
Q Consensus 451 ~~~~~~~ 457 (776)
+.++.+.
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 6666553
No 253
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.9e-13 Score=120.02 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=70.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC-----ccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-----KQC 268 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g-----r~i 268 (776)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+ +||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45678999999999999999999999999999999865 899999999999999999999999999 999
Q ss_pred cccCCCCC
Q 004060 269 GVTPSQDS 276 (776)
Q Consensus 269 ~V~~a~~~ 276 (776)
.|.++...
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99887554
No 254
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.41 E-value=1.3e-13 Score=128.05 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=73.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCc---eEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~---i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
...++|||+|||+++|+++|+++|.+||. |..|.|+.+.. ++++|||||+|.+.++|.+||+ ||+..|.|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45678999999999999999999999999 89999999877 9999999999999999999999 9999999999998
Q ss_pred cCC
Q 004060 271 TPS 273 (776)
Q Consensus 271 ~~a 273 (776)
..+
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 255
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.6e-14 Score=128.37 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=73.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+|+++|+++|..||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345789999999999999999999999999887777777889999999999999999999999 9999999999999875
No 256
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=114.37 Aligned_cols=65 Identities=26% Similarity=0.468 Sum_probs=61.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHh-CCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI-NNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g 442 (776)
+.++|||+|||..+++++|+++|.+||.|..|.|+++ +|||||+|.+.++|++|+..| |+..|.|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 4489999999999999999999999999999999975 799999999999999999999 9999987
No 257
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.3e-13 Score=117.84 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=63.2
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCC-eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC-CccCCCcceEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN-AELGEGDNKAKV 449 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~~~~~v 449 (776)
..++|||+|||..+|+++|+++|.+||. |..+.|. ++|||||+|.+.++|++||+.||| ..|.| ..+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l 75 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIM 75 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEE
Confidence 3489999999999999999999999999 6555553 378999999999999999999999 89986 445
Q ss_pred EEeccCCC
Q 004060 450 RARLSRPL 457 (776)
Q Consensus 450 ~~~~~~~~ 457 (776)
.+.++++.
T Consensus 76 ~v~~a~~~ 83 (93)
T 2cqh_A 76 EVDYSVSK 83 (93)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 55565553
No 258
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.7e-13 Score=120.64 Aligned_cols=75 Identities=13% Similarity=0.353 Sum_probs=68.7
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.++.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 345789999999999999999999999999999999997 899999999999999999999999999999655443
No 259
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=122.21 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=72.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCc---eEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGE---VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~---i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
...++|||+|||+.+|+++|+++|..||. |..|.|+.+.. ++++|||||+|.+.++|.+||. +|+..|.|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 35678999999999999999999999998 89999999877 9999999999999999999999 9999999999998
Q ss_pred cCC
Q 004060 271 TPS 273 (776)
Q Consensus 271 ~~a 273 (776)
.++
T Consensus 87 ~~a 89 (107)
T 2lmi_A 87 YEI 89 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 260
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=3.5e-13 Score=120.93 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=63.6
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.. ++||||+|.+.++|++||..|||..|.+..+.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3479999999999999999999999999999998753 7899999999999999999999999987554333
No 261
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=4.3e-13 Score=119.66 Aligned_cols=75 Identities=16% Similarity=0.405 Sum_probs=66.8
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+..|||..|.| ..+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 96 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLE 96 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 445899999999999999999999999999999998 6899999999999999999999999976 4556
Q ss_pred EeccCCC
Q 004060 451 ARLSRPL 457 (776)
Q Consensus 451 ~~~~~~~ 457 (776)
+.++++.
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 6666553
No 262
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=3.7e-13 Score=123.44 Aligned_cols=69 Identities=13% Similarity=0.288 Sum_probs=62.4
Q ss_pred hhccccCCCCCCChHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 373 VKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
.++|||+|||+.+++++|+ ++|++||.|..|.|.. +++++|||||+|.+.++|.+||..|||..|.|..
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 4789999999999998876 6999999999988853 5788999999999999999999999999998743
No 263
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=5.4e-13 Score=121.79 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=68.5
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccE-EEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF-GFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
..|||+||++.+|+++|+++|++||.|..|.|+.. .+|| |||+|.+.++|++|++.|||..|.++ .+.+++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~ 101 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRID 101 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEE
Confidence 67889999999999999999999999999998764 2678 99999999999999999999999874 3677788
Q ss_pred ccCCC
Q 004060 453 LSRPL 457 (776)
Q Consensus 453 ~~~~~ 457 (776)
++++.
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 88764
No 264
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.9e-13 Score=119.25 Aligned_cols=74 Identities=23% Similarity=0.433 Sum_probs=65.8
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
.++|||+|||..+++++|+++|.+||.|..|.|+. ++|||||+|.+.++|.+|+..|||..|.| ..+.+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 96 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTG 96 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 47999999999999999999999999999999984 38999999999999999999999999986 455555
Q ss_pred ccCC
Q 004060 453 LSRP 456 (776)
Q Consensus 453 ~~~~ 456 (776)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 5543
No 265
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.40 E-value=6.2e-13 Score=116.20 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=64.6
Q ss_pred hhhhccccCCCCC-CChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEE
Q 004060 371 AQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (776)
Q Consensus 371 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (776)
...++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.| ..+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 87 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKL 87 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT----EEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 3458999999998 99999999999999999999984 7899999999999999999999999986 344
Q ss_pred EEeccCC
Q 004060 450 RARLSRP 456 (776)
Q Consensus 450 ~~~~~~~ 456 (776)
.+.++++
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 4455443
No 266
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2e-13 Score=121.64 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=59.8
Q ss_pred hhhccccCCCCCC-ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC--CccCCCc
Q 004060 372 QVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN--AELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~ 444 (776)
+.++|||+|||++ +++++|+++|.+||.|..|.|++. +|||||+|.+.++|++||+.||+ ..|.|..
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 4589999999998 999999999999999999999854 89999999999999999998865 4577644
No 267
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=116.92 Aligned_cols=77 Identities=27% Similarity=0.273 Sum_probs=69.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCce--ecCcccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV--INGKQCGVT 271 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~--l~gr~i~V~ 271 (776)
....+|||+|||..+|+++|+++|.+||.|+.|.|++ .+|||||+|.+.++|.+|+..|++.. |.|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3567899999999999999999999999999999984 37899999999999999999998764 789999999
Q ss_pred CCCCC
Q 004060 272 PSQDS 276 (776)
Q Consensus 272 ~a~~~ 276 (776)
++...
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 87654
No 268
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.39 E-value=4.5e-13 Score=130.59 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=70.5
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
.+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.|||..|.|..+.+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445899999999999999999999999999999999998 89999999999999999999999999999987544333
No 269
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7e-13 Score=116.45 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=68.6
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc--CceecCccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~--~~~l~gr~i~V~~ 272 (776)
..++|||+|||+.+++++|+++|.+||.|+.|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4578999999999999999999999999999998853 8999999999999999999874 6789999999998
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 8543
No 270
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.4e-13 Score=120.57 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=74.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 457789999999999999999999999999999999875 358999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 271
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=122.82 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=66.0
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGE---ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||+++|+++|+++|..||. |..|.|+.+.. |+++|||||+|.+.++|++||. ||+..|.+..
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 3488999999999999999999999998 89999999987 9999999999999999999999 9999998744
No 272
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.3e-13 Score=121.31 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=73.4
Q ss_pred cCcceEEEcCCCcC-CcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc--CceecCccccc
Q 004060 194 RKEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGV 270 (776)
Q Consensus 194 ~~~~tlfV~nLp~~-~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~--~~~l~gr~i~V 270 (776)
...++|||+|||++ +++++|+++|.+||.|+.|.|++ ++|||||+|.+.++|.+|++.|+ +..|.|+.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34678999999998 99999999999999999999974 47999999999999999999886 45699999999
Q ss_pred cCCCCCCccccc
Q 004060 271 TPSQDSDTLFLG 282 (776)
Q Consensus 271 ~~a~~~~~l~V~ 282 (776)
.++.....+.++
T Consensus 97 ~~a~~~~~~~~~ 108 (112)
T 1x4f_A 97 DLSEKYKKLVSG 108 (112)
T ss_dssp EEECSCSSSSCC
T ss_pred EECccccccccC
Confidence 999877766654
No 273
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.39 E-value=3.4e-13 Score=131.43 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=77.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346789999999999999999999999999999999987 8999999999999999999999999999999999999887
Q ss_pred CCCC
Q 004060 274 QDSD 277 (776)
Q Consensus 274 ~~~~ 277 (776)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 5543
No 274
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.1e-13 Score=113.36 Aligned_cols=75 Identities=23% Similarity=0.500 Sum_probs=69.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 356789999999999999999999999999999997 679999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 275
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.39 E-value=2.1e-13 Score=126.90 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=72.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+++|+++|+++|.+|| |+.|.|+.++. ++++|||||+|.+.++|++|| .+|+..|.|+.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999 67999999876 999999999999999999999 68999999999999776
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 276
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=3.5e-13 Score=115.48 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=76.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||+.+++++|+++|.+| .|..|.|. +++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356789999999999999999999999 99999884 56899999999999999999999999999999999999
Q ss_pred CCCCcccccCc
Q 004060 274 QDSDTLFLGNI 284 (776)
Q Consensus 274 ~~~~~l~V~nL 284 (776)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88887777763
No 277
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=9.1e-13 Score=115.98 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=71.0
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
....++|||+|||..+++++|+++|.+||.|..|.|+ +++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999997 3589999999999999999999999999999999998
Q ss_pred CCC
Q 004060 273 SQD 275 (776)
Q Consensus 273 a~~ 275 (776)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 278
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=117.04 Aligned_cols=67 Identities=18% Similarity=0.370 Sum_probs=60.6
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
.++|||+|||..+++++|+++|.+||.|. +.|+.+ +++|||||+|.+.++|++||+.|||..|.|..
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 48999999999999999999999999997 666643 56899999999999999999999999998743
No 279
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=7.8e-13 Score=120.20 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=66.3
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccE-EEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF-GFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
...|||+||++.+|+++|+++|++||.|..|.|+.. .|| |||+|.+.++|.+|++.|||..|.++. +.+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V 96 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKI 96 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEE
Confidence 356789999999999999999999999999999752 386 999999999999999999999998643 45666
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 97 ~~Ak~~ 102 (124)
T 2e5i_A 97 EYARPT 102 (124)
T ss_dssp ECCSCS
T ss_pred EEecCC
Confidence 777654
No 280
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=9.3e-13 Score=117.72 Aligned_cols=81 Identities=27% Similarity=0.542 Sum_probs=74.3
Q ss_pred HhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 191 ~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
......++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999865 789999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004060 271 TPSQDSD 277 (776)
Q Consensus 271 ~~a~~~~ 277 (776)
.++....
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9986654
No 281
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.39 E-value=7.4e-13 Score=119.55 Aligned_cols=70 Identities=11% Similarity=0.329 Sum_probs=64.3
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3489999999999999999999999999999999865 456999999999999999999999999998744
No 282
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9.4e-13 Score=114.30 Aligned_cols=64 Identities=20% Similarity=0.418 Sum_probs=58.3
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||+.+++++|+++|.+||.|..| +.+..+++ ||||+|.+.++|++||. ||+..|.|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 4799999999999999999999999999987 55555554 99999999999999999 99999987
No 283
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=124.06 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=63.0
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCe----eEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEI----TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
..+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||+. |+..|.+.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 3789999999999999999999999975 68999988 4899999999999999999999985 88888763
No 284
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=3.9e-13 Score=122.47 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=71.6
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCce----EEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEV----TEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i----~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i 268 (776)
.....+|||+|||+++|+++|+++|.+||.| ..|.|+.+ .+++++|||||+|.+.++|.+||+. |+..|.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567899999999999999999999999975 68999988 5899999999999999999999996 9999999998
Q ss_pred cccCC
Q 004060 269 GVTPS 273 (776)
Q Consensus 269 ~V~~a 273 (776)
.|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 88654
No 285
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.2e-13 Score=120.35 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=69.6
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc--CceecCcccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVT 271 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~--~~~l~gr~i~V~ 271 (776)
....+|||+|||+.+|+++|+++|.+||.|+.|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34678999999999999999999999999999999864 7999999999999999999887 468999999999
Q ss_pred CCCCC
Q 004060 272 PSQDS 276 (776)
Q Consensus 272 ~a~~~ 276 (776)
++...
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 88544
No 286
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=6.3e-13 Score=117.00 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=71.2
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.| .|+.+ .++++++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 356789999999999999999999999987 45555 67899999999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 287
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2.2e-13 Score=122.27 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=73.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
+..++|||+|||+.+++++|+++|.+||.|..|.|+. +++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567899999999999999999999999999998863 5789999999999999999999999999999999987
Q ss_pred CCCCcccccCcc
Q 004060 274 QDSDTLFLGNIC 285 (776)
Q Consensus 274 ~~~~~l~V~nLp 285 (776)
.. .++..+.+
T Consensus 82 ~~--~~~~~~~~ 91 (111)
T 1whx_A 82 PI--GVFGAAPQ 91 (111)
T ss_dssp ET--TTTCCCCC
T ss_pred CC--CccCCCCC
Confidence 54 34444433
No 288
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.37 E-value=3.6e-13 Score=120.37 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=71.6
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCC-ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G-~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
....++|||+|||+.+++++|+++|.+|| .|..|.|+. ..++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44577899999999999999999999999 899998863 3479999999999999999999999999999999998
Q ss_pred CCCC
Q 004060 272 PSQD 275 (776)
Q Consensus 272 ~a~~ 275 (776)
++..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7753
No 289
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.9e-12 Score=113.03 Aligned_cols=74 Identities=16% Similarity=0.393 Sum_probs=64.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEE
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (776)
..++|||+|| .+|+++|+++|.+||.|..|.|. +++|||||+|.+.++|++||..||+..|.+ ..+.+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v 81 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKV 81 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEE
Confidence 4589999996 89999999999999999999995 348999999999999999999999999976 45666
Q ss_pred eccCCC
Q 004060 452 RLSRPL 457 (776)
Q Consensus 452 ~~~~~~ 457 (776)
.++++.
T Consensus 82 ~~a~~~ 87 (97)
T 1x5p_A 82 NIARKQ 87 (97)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 666553
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.37 E-value=3.4e-13 Score=117.77 Aligned_cols=78 Identities=19% Similarity=0.413 Sum_probs=68.2
Q ss_pred hhhccccCCCCCCChHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 372 QVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.| .
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 79 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----K 79 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----c
Confidence 45899999999999999999 9999999999999874 46778999999999999999999999999976 4
Q ss_pred EEEEeccCC
Q 004060 448 KVRARLSRP 456 (776)
Q Consensus 448 ~v~~~~~~~ 456 (776)
.+.+.++++
T Consensus 80 ~l~v~~a~~ 88 (97)
T 1nu4_A 80 PMRIQYAKT 88 (97)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEccC
Confidence 455555554
No 291
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1e-12 Score=114.72 Aligned_cols=76 Identities=16% Similarity=0.398 Sum_probs=70.0
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceec--CccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN--GKQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~--gr~i~V~~ 272 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+|++.||+..|. |+.|.|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4578999999999999999999999999999998753 789999999999999999999999999 99999998
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 292
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=9.4e-13 Score=120.69 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=71.9
Q ss_pred CcceEEEcCCCcCCcHHHHH----HhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~----~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
..++|||+|||+.+++++|+ ++|++||.|+.|.+.. +++++|||||+|.+.++|..|+..||+..|.|+.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46789999999999999876 6999999999988853 5788999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004060 271 TPSQDSD 277 (776)
Q Consensus 271 ~~a~~~~ 277 (776)
.++....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9886543
No 293
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=110.91 Aligned_cols=74 Identities=28% Similarity=0.507 Sum_probs=68.6
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhc-cCceecCccccccC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l-~~~~l~gr~i~V~~ 272 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|.+|+..| ++..|.|+.|.|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34678999999999999999999999999999999863 799999999999999999999 99999999999987
Q ss_pred C
Q 004060 273 S 273 (776)
Q Consensus 273 a 273 (776)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 294
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=9.5e-13 Score=116.07 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=72.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|..|+ .|.++.+..++.+++||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4567899999999999999999999873 6778888888999999999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 295
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=7.2e-13 Score=120.98 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=69.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceE--EEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~--~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
....+|||+|||+.+|+++|+++|++| .|+ .|.|+.+.. ++++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456789999999999999999999999 566 899999877 99999999999999999999995 6789999999987
Q ss_pred CC
Q 004060 272 PS 273 (776)
Q Consensus 272 ~a 273 (776)
.+
T Consensus 117 ~a 118 (126)
T 2hgm_A 117 KS 118 (126)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 296
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=115.70 Aligned_cols=76 Identities=28% Similarity=0.315 Sum_probs=68.2
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccC--ceecCccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~--~~l~gr~i~V~~ 272 (776)
...+|||+|||+.+++++|+++|.+||.|+.|.|+.+ ++||||+|.+.++|.+|++.|++ ..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999998753 79999999999999999998864 459999999998
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8654
No 297
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.36 E-value=1.6e-12 Score=123.18 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=67.5
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
..+|||+||++.+|+++|+++|++||.|..|.|... .+++||||+|.+.++|++|++.|||..|.+++. .+++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~--~L~V~ 119 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC--TLRID 119 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS--CEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc--EEEEE
Confidence 367999999999999999999999999999999754 247899999999999999999999999976443 45556
Q ss_pred ccCCC
Q 004060 453 LSRPL 457 (776)
Q Consensus 453 ~~~~~ 457 (776)
++++.
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 66653
No 298
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=5.9e-14 Score=127.07 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=77.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEE--------EEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTE--------VRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~--------v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
...++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 44678999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004060 266 KQCGVTPSQDS 276 (776)
Q Consensus 266 r~i~V~~a~~~ 276 (776)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999987544
No 299
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.36 E-value=5e-13 Score=117.90 Aligned_cols=68 Identities=22% Similarity=0.479 Sum_probs=64.0
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
..++|||+|||..+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|++|+. ++..|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g 75 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHG 75 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECC
Confidence 34899999999999999999999999999999999998 99999999999999999999998 7778876
No 300
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=3.9e-13 Score=120.30 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=63.3
Q ss_pred hccccCCC----CCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCc----h-HH---HHHHHH--HhCCCc
Q 004060 374 KTVFVDGL----PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT----H-DA---AVTCAK--SINNAE 439 (776)
Q Consensus 374 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~----~-~~---A~~A~~--~l~g~~ 439 (776)
+.|||+|| |+.+++.+|+++|+.||.|..|.++.|+.||+++|||||+|.+ + ++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 3 22 889988 789999
Q ss_pred cCC
Q 004060 440 LGE 442 (776)
Q Consensus 440 ~~g 442 (776)
|.|
T Consensus 83 I~G 85 (136)
T 2j8a_A 83 IMG 85 (136)
T ss_dssp ETT
T ss_pred ecC
Confidence 997
No 301
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=7.8e-13 Score=119.46 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=63.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.+ +||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 34678999999999999999999999999999999754 899999999999999999999999999996654
No 302
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.7e-12 Score=111.41 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=67.9
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
...+|||+|||+.+++++|+++|.+||.|..| +.+..+++ ||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45689999999999999999999999999987 55555555 99999999999999999 99999999999999875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 303
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.35 E-value=8.6e-13 Score=146.82 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=76.6
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||+.+|+++|+++|.+||.|+.|.|+.+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 3
No 304
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.35 E-value=1.5e-13 Score=120.99 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=72.9
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+|+++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4678999999999999999999999999887 666777788999999999999999999999 99999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 305
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.34 E-value=7.1e-13 Score=121.03 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=63.0
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCee--EEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEIT--KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
..++|||+|||+.+|+++|+++|++| .|+ .|.|+.++. |+++|||||+|.+.++|++||+ +++..|.+..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~ 112 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRY 112 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence 34789999999999999999999999 676 899999976 9999999999999999999998 5778888643
No 306
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.34 E-value=1.8e-12 Score=115.57 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=71.2
Q ss_pred HhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 191 ~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
......++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344567899999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred cCCCCC
Q 004060 271 TPSQDS 276 (776)
Q Consensus 271 ~~a~~~ 276 (776)
.++...
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 988654
No 307
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=114.50 Aligned_cols=77 Identities=26% Similarity=0.417 Sum_probs=69.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||+.+++++|+++|.+||.|. +.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 457899999999999999999999999997 66664 3679999999999999999999999999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 308
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=117.35 Aligned_cols=62 Identities=23% Similarity=0.505 Sum_probs=58.6
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEeCchHHHHHHHHHh
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSI 435 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l 435 (776)
.++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 48999999999999999999999999999 888888777 799999999999999999999998
No 309
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3e-13 Score=122.16 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=70.2
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+|+++|+++|.+||.|..|.+..+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45789999999999999999999999998433222222268899999999999999999999999999999999999885
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 104 ~~ 105 (115)
T 2cpx_A 104 NK 105 (115)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 310
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.34 E-value=1.2e-12 Score=112.34 Aligned_cols=75 Identities=21% Similarity=0.369 Sum_probs=60.1
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEE
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (776)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|+ .|++..+.+.. +.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g--~~v~ 77 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKG--ISVH 77 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETT--EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCC--EEEE
Confidence 34589999999999999999999999999999999874 5899999999999998 36777765434 4455
Q ss_pred EeccCC
Q 004060 451 ARLSRP 456 (776)
Q Consensus 451 ~~~~~~ 456 (776)
+.++.+
T Consensus 78 v~~a~~ 83 (89)
T 3d2w_A 78 ISNAEP 83 (89)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 555544
No 311
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.33 E-value=2.7e-12 Score=112.05 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=70.1
Q ss_pred hccCcceEEEcCCCc-CCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 192 RKRKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 192 ~~~~~~tlfV~nLp~-~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
.....++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999983 789999999999999999999999999999999
Q ss_pred cCCCCC
Q 004060 271 TPSQDS 276 (776)
Q Consensus 271 ~~a~~~ 276 (776)
.++...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 887543
No 312
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=2.3e-12 Score=123.77 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=71.9
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|++.|||..|.+ ..+.+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT----KTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC----ceEEEE
Confidence 3789999999999999999999999999999999999899999999999999999999999999999986 334444
Q ss_pred ccCC
Q 004060 453 LSRP 456 (776)
Q Consensus 453 ~~~~ 456 (776)
++.+
T Consensus 78 ~~~~ 81 (167)
T 1fxl_A 78 YARP 81 (167)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 4443
No 313
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=111.89 Aligned_cols=75 Identities=27% Similarity=0.467 Sum_probs=69.5
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456789999999999999999999999999999997 349999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 314
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=111.39 Aligned_cols=75 Identities=25% Similarity=0.531 Sum_probs=69.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 456789999999999999999999999999999997 349999999999999999999999999999999987
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 315
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.33 E-value=2e-12 Score=124.57 Aligned_cols=80 Identities=18% Similarity=0.380 Sum_probs=72.4
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
.++|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++|++.||+..|.+ ..+.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN----KRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC----cEEEEE
Confidence 4899999999999999999999999999999999999899999999999999999999999999999986 344445
Q ss_pred ccCC
Q 004060 453 LSRP 456 (776)
Q Consensus 453 ~~~~ 456 (776)
++.+
T Consensus 79 ~~~~ 82 (168)
T 1b7f_A 79 YARP 82 (168)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 5544
No 316
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.33 E-value=1.6e-12 Score=114.80 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=68.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+|+++|+++|.+||.|..|.|+ ++||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 45789999999999999999999999999999987 4599999999999999999999999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 317
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=116.98 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=66.5
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCC---CCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT---KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~t---g~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
...++|||+|||+.+|+++|+++|.+||.|. +.++.+..+ ++++|||||+|.+.++|.+||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3467899999999999999999999999999 888887777 7999999999999999999999884 366666655
Q ss_pred cCC
Q 004060 271 TPS 273 (776)
Q Consensus 271 ~~a 273 (776)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 443
No 318
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.32 E-value=3.5e-13 Score=126.80 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=65.9
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEE--------EEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKI--------ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--------~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.++|||+|||+.+|+++|+.+|.+||.|..| .+. .+++++|||||+|.+.++|.+||..|||..|.|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g- 119 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG- 119 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC-
Confidence 34899999999999999999999999998764 332 368899999999999999999999999999986
Q ss_pred cceEEEEEeccCC
Q 004060 444 DNKAKVRARLSRP 456 (776)
Q Consensus 444 ~~~~~v~~~~~~~ 456 (776)
..+.+.++++
T Consensus 120 ---~~l~V~~a~~ 129 (143)
T 3egn_A 120 ---KPMVVQFARS 129 (143)
T ss_dssp ---EECEEEECCC
T ss_pred ---cEEEEEECCC
Confidence 4445555544
No 319
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.32 E-value=1e-12 Score=114.71 Aligned_cols=81 Identities=20% Similarity=0.420 Sum_probs=73.8
Q ss_pred cCcceEEEcCCCcCCcHHHHH----HhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLR----KVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~----~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~ 269 (776)
...++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999 9999999999999873 467889999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004060 270 VTPSQDSD 277 (776)
Q Consensus 270 V~~a~~~~ 277 (776)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99886553
No 320
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.7e-12 Score=111.62 Aligned_cols=76 Identities=25% Similarity=0.421 Sum_probs=69.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccC--CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCcccccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQV--GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~--G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~ 271 (776)
...++|||+|||+.+++++|+++|.+| |.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 346789999999999999999999999 999998875 6799999999999999999999999999999999
Q ss_pred CCCCCC
Q 004060 272 PSQDSD 277 (776)
Q Consensus 272 ~a~~~~ 277 (776)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 886543
No 321
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.2e-12 Score=112.39 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=68.3
Q ss_pred cCcceEEEcCCCc-CCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 194 RKEFEVFVGGLDK-DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 194 ~~~~tlfV~nLp~-~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
...++|||+|||+ .+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4577899999998 99999999999999999999984 78999999999999999999999999999999988
Q ss_pred CCC
Q 004060 273 SQD 275 (776)
Q Consensus 273 a~~ 275 (776)
+..
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 744
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=9.8e-13 Score=116.02 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=71.8
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999998 89999999999999999999999 8889999999887653
No 323
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.31 E-value=2.4e-12 Score=109.86 Aligned_cols=65 Identities=14% Similarity=0.428 Sum_probs=60.6
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCcc
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNY----G-------EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (776)
+.++|||+|||..+++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|++|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45899999999999999999999999 8 8999999865 899999999999999999 9999999
Q ss_pred CCC
Q 004060 441 GEG 443 (776)
Q Consensus 441 ~g~ 443 (776)
.|.
T Consensus 78 ~g~ 80 (87)
T 2hzc_A 78 QGQ 80 (87)
T ss_dssp TTE
T ss_pred CCe
Confidence 873
No 324
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.2e-12 Score=117.02 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=71.6
Q ss_pred ceEEEcCC----CcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEecc----HHH----HHHHhh--hccCce
Q 004060 197 FEVFVGGL----DKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT----VEQ----ARQAVT--ELKNPV 262 (776)
Q Consensus 197 ~tlfV~nL----p~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s----~e~----A~~Al~--~l~~~~ 262 (776)
.+|||+|| |+.+++.+|+++|+.||+|..|.++.|+.||.++|||||+|.+ .+. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 56999999 9999999999999999999999999999999999999999995 322 888888 789999
Q ss_pred ecCccccccCCCCC
Q 004060 263 INGKQCGVTPSQDS 276 (776)
Q Consensus 263 l~gr~i~V~~a~~~ 276 (776)
|.|+.|.|....+.
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999866544
No 325
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.30 E-value=4.5e-12 Score=112.18 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=63.3
Q ss_pred hhhhccccCCCCC-----CChHHHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPA-----SWDEDRVRELLKNYGEITKIELARNMPS-AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++++|+|.||.. +.++++|+++|++||.|..|.|+.++.+ ++++|||||+|.+.++|.+|++.|||+.|.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3558999999963 2368999999999999999999988654 6889999999999999999999999999987
No 326
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.30 E-value=2.3e-12 Score=110.37 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=59.3
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.++|||+|||+.+++++|+++|.+| .|..|.|. +++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4789999999999999999999999 99999985 458999999999999999999999999986
No 327
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=112.12 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=61.2
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKI-ELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
.++|||+|||+.+++++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|++||..|||..|.|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4899999999999999999999999999999 588775544 4999999999999999999999998733
No 328
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.30 E-value=1e-12 Score=114.46 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=69.5
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 46789999999999999999999999988766 3467889999999999999999999999999999999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.7e-12 Score=106.64 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=67.4
Q ss_pred cceEEEcCCCcCCcHHH----HHHhhccC-CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 196 EFEVFVGGLDKDVVGDD----LRKVFSQV-GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~d----L~~~f~~~-G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
.++|||+|||+.+++++ |+++|.+| |+|+.| ++ |+|||.|.+.++|.+|++.|++..|.|+.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999888 55899999 599988 23 99999999999999999999999999999999
Q ss_pred cCCCCCCcccc
Q 004060 271 TPSQDSDTLFL 281 (776)
Q Consensus 271 ~~a~~~~~l~V 281 (776)
.++.....++.
T Consensus 79 ~~A~~~sd~~~ 89 (96)
T 2diu_A 79 SFTPKNRELCE 89 (96)
T ss_dssp ESSCCSCCCCC
T ss_pred EecCCCcceeE
Confidence 99988776654
No 330
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=111.97 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=70.0
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEE-EEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV-RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v-~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..++|||+|||+.+++++|+++|.+||.|..| .|+.+..++. |||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999 5877655433 999999999999999999999999999999887
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.29 E-value=3.3e-12 Score=114.34 Aligned_cols=72 Identities=28% Similarity=0.545 Sum_probs=67.7
Q ss_pred cceEEEcCCCcC-CcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 196 EFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 196 ~~tlfV~nLp~~-~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
.++|||+|||+. +++++|+++|.+||.|..|.| +++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 478999999999 999999999999999999998 47899999999999999999999999999999998875
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 332
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.2e-12 Score=110.41 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=60.2
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEEEEEe
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (776)
.++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++..+.... +.|.+.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g--~~l~v~ 73 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKG--ISVHIS 73 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETT--EEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCC--EEEEEE
Confidence 489999999999999999999999999999999865 58999999999999975 4555553323 556666
Q ss_pred ccCCC
Q 004060 453 LSRPL 457 (776)
Q Consensus 453 ~~~~~ 457 (776)
++.+.
T Consensus 74 ~a~~~ 78 (88)
T 1wf0_A 74 NAEPK 78 (88)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 66553
No 333
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.6e-12 Score=107.20 Aligned_cols=69 Identities=22% Similarity=0.356 Sum_probs=58.0
Q ss_pred hccccCCCCCCChHHH----HHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 374 KTVFVDGLPASWDEDR----VRELLKNY-GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~----L~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
++|||+|||+.+++++ |+++|.+| |+|..| ++ |||||+|.+.++|++|++.|||..|.|+ .
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr----~ 75 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN----R 75 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS----C
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc----e
Confidence 4499999999999887 55899999 599888 23 9999999999999999999999999873 3
Q ss_pred EEEeccCC
Q 004060 449 VRARLSRP 456 (776)
Q Consensus 449 v~~~~~~~ 456 (776)
+++.+++.
T Consensus 76 i~v~~A~~ 83 (96)
T 2diu_A 76 IIVSFTPK 83 (96)
T ss_dssp CEEESSCC
T ss_pred EEEEecCC
Confidence 45555544
No 334
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.26 E-value=8e-12 Score=106.52 Aligned_cols=72 Identities=22% Similarity=0.464 Sum_probs=65.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccC----C-------ceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCce
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQV----G-------EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV 262 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (776)
...++|||+|||+.+++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346789999999999999999999999 8 8999998753 899999999999999999 899999
Q ss_pred ecCccccccC
Q 004060 263 INGKQCGVTP 272 (776)
Q Consensus 263 l~gr~i~V~~ 272 (776)
|.|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999998864
No 335
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.8e-12 Score=111.02 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=67.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCc-eEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccC-ceecCccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN-PVINGKQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~-i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~-~~l~gr~i~V~~ 272 (776)
..++|||+|||..+|+++|+++|.+||. |..+.+. +++||||+|.+.++|.+|+..||+ ..|.|+.|.|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4578999999999999999999999999 6655553 478999999999999999999999 999999999998
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8554
No 336
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.26 E-value=8.6e-12 Score=123.37 Aligned_cols=71 Identities=20% Similarity=0.461 Sum_probs=66.8
Q ss_pred hhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
...++|||+|||.++|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||.. ++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g 81 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG 81 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC
Confidence 3458999999999999999999999999999999999999999999999999999999999985 8888876
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=1.4e-11 Score=121.70 Aligned_cols=73 Identities=23% Similarity=0.428 Sum_probs=65.0
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
....++|||+|||..+|+++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|++||..++ ..|.|..
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~ 178 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETD 178 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEE
Confidence 3456899999999999999999999999999999999886 58899999999999999999998655 5888743
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.25 E-value=1.3e-11 Score=112.53 Aligned_cols=78 Identities=24% Similarity=0.283 Sum_probs=69.8
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcce-EEEEeccHHHHHHHhhhccCceecC--cccccc
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF-AFLRFATVEQARQAVTELKNPVING--KQCGVT 271 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~-afV~F~s~e~A~~Al~~l~~~~l~g--r~i~V~ 271 (776)
.-..|||+||++.+|+++|.++|++||.|..|.|+.. .++| |||+|.+.++|.+|++.||+..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3456889999999999999999999999999998863 3677 9999999999999999999999988 899999
Q ss_pred CCCCCC
Q 004060 272 PSQDSD 277 (776)
Q Consensus 272 ~a~~~~ 277 (776)
+++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 887653
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.6e-11 Score=107.04 Aligned_cols=75 Identities=28% Similarity=0.419 Sum_probs=68.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|| .+++++|+++|.+||.|..|.|. .+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35678999996 89999999999999999999984 46899999999999999999999999999999999988
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
...
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 340
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=123.15 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=70.9
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEE--------EEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEV--------RLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v--------~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
...++|||+|||+.+|+++|+++|.+||.|..| .+. .+++++|||||+|.+.++|.+||..||+..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 456789999999999999999999999988764 333 468899999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004060 266 KQCGVTPSQDS 276 (776)
Q Consensus 266 r~i~V~~a~~~ 276 (776)
+.|.|.++...
T Consensus 120 ~~l~V~~a~~~ 130 (143)
T 3egn_A 120 KPMVVQFARSA 130 (143)
T ss_dssp EECEEEECCCS
T ss_pred cEEEEEECCCC
Confidence 99999887543
No 341
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.25 E-value=1.6e-11 Score=123.43 Aligned_cols=84 Identities=23% Similarity=0.475 Sum_probs=79.0
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
.....+|||+|||..+++++|+++|.+||.|+.|.|+.+..+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 35678899999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 202 a~~~ 205 (216)
T 2qfj_A 202 AVTP 205 (216)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 7554
No 342
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.24 E-value=7.6e-12 Score=120.99 Aligned_cols=78 Identities=22% Similarity=0.452 Sum_probs=75.1
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
..+|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 678999999999999999999999999999999999889999999999999999999999999999999999999865
No 343
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.24 E-value=1.4e-11 Score=116.82 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=70.1
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC--ccccccC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING--KQCGVTP 272 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g--r~i~V~~ 272 (776)
.-.+|||+||++.+|+++|+++|++||.|+.|.|+.. .+++||||+|.+.++|.+|++.||+..|.| +.|.|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456999999999999999999999999999999753 357899999999999999999999999966 9999998
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8765
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=2.7e-11 Score=110.00 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=67.1
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcce-EEEEeccHHHHHHHhhhccCceecC--ccccccCC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF-AFLRFATVEQARQAVTELKNPVING--KQCGVTPS 273 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~-afV~F~s~e~A~~Al~~l~~~~l~g--r~i~V~~a 273 (776)
..|||+||++.+|+++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|++.||+..|.| +.|.|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34789999999999999999999999999999752 286 9999999999999999999999988 58999988
Q ss_pred CCCC
Q 004060 274 QDSD 277 (776)
Q Consensus 274 ~~~~ 277 (776)
....
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.22 E-value=1.3e-11 Score=105.88 Aligned_cols=76 Identities=26% Similarity=0.463 Sum_probs=61.1
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
.....+|||+|||+++|+++|+++|++||.|+.|.|+.+ ++|||||+|.+.++|.++.. ....+.|+.|.|..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEE
Confidence 345778999999999999999999999999999999864 79999999999999984322 12345688888887
Q ss_pred CCC
Q 004060 273 SQD 275 (776)
Q Consensus 273 a~~ 275 (776)
+.+
T Consensus 81 a~~ 83 (89)
T 3d2w_A 81 AEP 83 (89)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=3.4e-11 Score=106.51 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=71.6
Q ss_pred cCcceEEEcCCCc-----CCcHHHHHHhhccCCceEEEEEeecCCC-CCCcceEEEEeccHHHHHHHhhhccCceecCcc
Q 004060 194 RKEFEVFVGGLDK-----DVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (776)
Q Consensus 194 ~~~~tlfV~nLp~-----~~te~dL~~~f~~~G~i~~v~i~~d~~t-g~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~ 267 (776)
....+|+|.||.. +.++++|+++|++||.|+.|.|+.++.+ +.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999973 2478999999999999999999998654 688999999999999999999999999999999
Q ss_pred ccccCCC
Q 004060 268 CGVTPSQ 274 (776)
Q Consensus 268 i~V~~a~ 274 (776)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998764
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.21 E-value=1.2e-11 Score=112.57 Aligned_cols=64 Identities=17% Similarity=0.370 Sum_probs=58.5
Q ss_pred hhhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|++||..|||..|.|.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4589999996 69999999999999999999996 3489999999999999999999999999863
No 348
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.21 E-value=9.1e-12 Score=119.83 Aligned_cols=79 Identities=22% Similarity=0.474 Sum_probs=74.9
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~ 275 (776)
..+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5679999999999999999999999999999999998899999999999999999999998 899999999999988754
No 349
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.20 E-value=1.9e-11 Score=121.15 Aligned_cols=83 Identities=20% Similarity=0.415 Sum_probs=78.0
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCC
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a 273 (776)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred CCC
Q 004060 274 QDS 276 (776)
Q Consensus 274 ~~~ 276 (776)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.3e-11 Score=110.11 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=63.7
Q ss_pred CcceEEE--cCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCcee-----cCcc
Q 004060 195 KEFEVFV--GGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-----NGKQ 267 (776)
Q Consensus 195 ~~~tlfV--~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l-----~gr~ 267 (776)
...+||| +||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.||+..| .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4567999 77999999999999999999999998763 378999999999999999999999988 5677
Q ss_pred ccccCC
Q 004060 268 CGVTPS 273 (776)
Q Consensus 268 i~V~~a 273 (776)
|.|.++
T Consensus 98 l~v~~a 103 (114)
T 2cq2_A 98 LYLNFV 103 (114)
T ss_dssp CEEEEE
T ss_pred EEEEec
Confidence 766543
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.19 E-value=2.2e-11 Score=120.37 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=71.3
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||+.+|+++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 45789999999999999999999999999999999875 48899999999999999999998665 58999999998764
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.5e-11 Score=105.20 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=64.6
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
..++|||+|||..+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4678999999999999999999999999999999854 689999999999999876543 456689999998875
Q ss_pred CC
Q 004060 275 DS 276 (776)
Q Consensus 275 ~~ 276 (776)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.18 E-value=2.3e-11 Score=123.05 Aligned_cols=63 Identities=29% Similarity=0.527 Sum_probs=59.7
Q ss_pred hhhccccCCCCCCC---------hHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCcc
Q 004060 372 QVKTVFVDGLPASW---------DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (776)
Q Consensus 372 ~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (776)
..++|||+||+..+ ++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|+.|++.|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45899999999998 89999999999999999999865 89999999999999999999999999
No 354
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.15 E-value=3.7e-11 Score=106.27 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=61.3
Q ss_pred hhhccccCCC--CCCC--------hHHHHHHHHhhcCCeeEEEEeecCCC--CCcccEEEEEeCchHHHHHHHHHhCCCc
Q 004060 372 QVKTVFVDGL--PASW--------DEDRVRELLKNYGEITKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (776)
Q Consensus 372 ~~~~l~V~nL--p~~~--------t~~~L~~~F~~~G~v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (776)
++++|+|.|+ +..+ .+++|+++|++||.|..|.|+++..+ ++++|||||+|.+.++|++|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3477888887 2222 34799999999999999999988755 4679999999999999999999999999
Q ss_pred cCCCc
Q 004060 440 LGEGD 444 (776)
Q Consensus 440 ~~g~~ 444 (776)
|.|+.
T Consensus 84 f~GR~ 88 (105)
T 3v4m_A 84 FANRV 88 (105)
T ss_dssp ETTEE
T ss_pred eCCCE
Confidence 98733
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.15 E-value=4.6e-11 Score=108.67 Aligned_cols=76 Identities=28% Similarity=0.411 Sum_probs=68.9
Q ss_pred ccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccC
Q 004060 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~ 272 (776)
....++|||+|| ++|+++|+++|.+||.|..|.|. .++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346788999996 69999999999999999999986 4689999999999999999999999999999999998
Q ss_pred CCCC
Q 004060 273 SQDS 276 (776)
Q Consensus 273 a~~~ 276 (776)
+...
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 7654
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.5e-10 Score=103.77 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=62.8
Q ss_pred hhhhccccCCCCCCCh-----------HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCc
Q 004060 371 AQVKTVFVDGLPASWD-----------EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (776)
Q Consensus 371 ~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (776)
.++++|+|.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|++||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3458999999954432 6899999999999999966 443 379999999999999999999999999
Q ss_pred cCCCcceEEEEEeccCC
Q 004060 440 LGEGDNKAKVRARLSRP 456 (776)
Q Consensus 440 ~~g~~~~~~v~~~~~~~ 456 (776)
|.| ..|.+.++.+
T Consensus 89 ~~g----r~l~v~~a~~ 101 (112)
T 2dit_A 89 FGG----RQITAQAWDG 101 (112)
T ss_dssp ETT----EECEEEECCS
T ss_pred ECC----cEEEEEEeCC
Confidence 986 3445555544
No 357
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.13 E-value=7e-11 Score=106.61 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=62.6
Q ss_pred hhhccccCCCCCC-----ChHHHHHHHHhhcCCeeEEEEeecCC----CCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPAS-----WDEDRVRELLKNYGEITKIELARNMP----SAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~-----~t~~~L~~~F~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
++++|+|.||-.. -.+++|+++|++||.|..|.|+++.. +++++|||||+|.+.++|.+|++.|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4578899998422 24689999999999999999998864 45778999999999999999999999999987
Q ss_pred Cc
Q 004060 443 GD 444 (776)
Q Consensus 443 ~~ 444 (776)
+.
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 43
No 358
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.12 E-value=8.9e-11 Score=123.35 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=63.8
Q ss_pred hhhccccCCCCCCChHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 372 QVKTVFVDGLPASWDEDRVR----ELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.++|||+|||..+|+++|+ ++|.+||.|..|.|++ +++++|||||+|.+.++|++||+.|||..|.|.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 45899999999999999977 8999999999999886 678899999999999999999999999999873
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.09 E-value=9.8e-11 Score=118.45 Aligned_cols=78 Identities=24% Similarity=0.489 Sum_probs=70.2
Q ss_pred ccCcceEEEcCCCcCC---------cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCcee
Q 004060 193 KRKEFEVFVGGLDKDV---------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI 263 (776)
Q Consensus 193 ~~~~~tlfV~nLp~~~---------te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l 263 (776)
....++|||+||+..+ ++++|+.+|++||.|..|+|+. ++|||||+|.+.++|+.|+..|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 389999999999999999999999999
Q ss_pred ------------cCccccccCCCCC
Q 004060 264 ------------NGKQCGVTPSQDS 276 (776)
Q Consensus 264 ------------~gr~i~V~~a~~~ 276 (776)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999988544
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=5.6e-11 Score=104.97 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=56.5
Q ss_pred cCCCCCCChHHHHHHHH------------hhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 378 VDGLPASWDEDRVRELL------------KNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 378 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
+.||++.+++++|+++| ++||.|..|.|+++. +++++|||||+|.+.++|++|+..|||+.|.|..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777777777666655 999999999999876 4789999999999999999999999999998743
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.5e-10 Score=102.38 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=69.8
Q ss_pred cCcceEEEcCCCcCCc-----------HHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCce
Q 004060 194 RKEFEVFVGGLDKDVV-----------GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV 262 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~t-----------e~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (776)
....+|+|.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|.+|+..||+..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4577899999954432 6899999999999999966 443 379999999999999999999999999
Q ss_pred ecCccccccCCCCCCccc
Q 004060 263 INGKQCGVTPSQDSDTLF 280 (776)
Q Consensus 263 l~gr~i~V~~a~~~~~l~ 280 (776)
|.|+.|.|.++......-
T Consensus 89 ~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp ETTEECEEEECCSCCCSS
T ss_pred ECCcEEEEEEeCCCCCcc
Confidence 999999999886654433
No 362
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.08 E-value=1.3e-10 Score=112.62 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=69.8
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~ 274 (776)
...+|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 45789999999999999999999999988766 4678899999999999999999999999999999999998875
Q ss_pred C
Q 004060 275 D 275 (776)
Q Consensus 275 ~ 275 (776)
+
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 4
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.03 E-value=1.8e-10 Score=114.22 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=62.3
Q ss_pred hhccccCCCCC-CChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCc
Q 004060 373 VKTVFVDGLPA-SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (776)
Q Consensus 373 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (776)
.++|||+|||. .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++|+..|||..|.|..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 37999999999 99999999999999999999998774 789999999999999999999999998743
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=3.3e-10 Score=100.15 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=68.1
Q ss_pred CcceEEEcCC--CcCC--------cHHHHHHhhccCCceEEEEEeecCCC--CCCcceEEEEeccHHHHHHHhhhccCce
Q 004060 195 KEFEVFVGGL--DKDV--------VGDDLRKVFSQVGEVTEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPV 262 (776)
Q Consensus 195 ~~~tlfV~nL--p~~~--------te~dL~~~f~~~G~i~~v~i~~d~~t--g~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (776)
...+|.|.|| |.++ .+++|+++|++||.|+.|.|+++..+ +.++|+|||+|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567899998 3333 34789999999999999999988654 4689999999999999999999999999
Q ss_pred ecCccccccCC
Q 004060 263 INGKQCGVTPS 273 (776)
Q Consensus 263 l~gr~i~V~~a 273 (776)
|.|+.|.|...
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999998764
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=2.7e-10 Score=121.46 Aligned_cols=78 Identities=13% Similarity=0.270 Sum_probs=63.3
Q ss_pred hhhhccccCC--CCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC-cceE
Q 004060 371 AQVKTVFVDG--LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG-DNKA 447 (776)
Q Consensus 371 ~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~~~~ 447 (776)
.++++|||+| |+..+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|++||+.|||+.+.+. +..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3458999999 578899999999999999999988764 379999999999999999999999988421 2323
Q ss_pred EEEEecc
Q 004060 448 KVRARLS 454 (776)
Q Consensus 448 ~v~~~~~ 454 (776)
.+.+.+.
T Consensus 90 ~ly~~~~ 96 (345)
T 3tht_A 90 TLYLNFV 96 (345)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 4444444
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.99 E-value=1.4e-10 Score=102.46 Aligned_cols=72 Identities=26% Similarity=0.395 Sum_probs=60.7
Q ss_pred EcCCCcCCcHHHHHHhh------------ccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccc
Q 004060 201 VGGLDKDVVGDDLRKVF------------SQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (776)
Q Consensus 201 V~nLp~~~te~dL~~~f------------~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i 268 (776)
+.||++.+++++|+++| ++||.|+.|.|+++.. ++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44556666666665555 9999999999998754 7899999999999999999999999999999999
Q ss_pred cccCC
Q 004060 269 GVTPS 273 (776)
Q Consensus 269 ~V~~a 273 (776)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 98764
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.97 E-value=6.7e-10 Score=100.15 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=69.9
Q ss_pred cCcceEEEcCCCc-----CCcHHHHHHhhccCCceEEEEEeecCC----CCCCcceEEEEeccHHHHHHHhhhccCceec
Q 004060 194 RKEFEVFVGGLDK-----DVVGDDLRKVFSQVGEVTEVRLMMNPQ----TKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (776)
Q Consensus 194 ~~~~tlfV~nLp~-----~~te~dL~~~f~~~G~i~~v~i~~d~~----tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~ 264 (776)
....+|+|.||-. +-.+++|++.|++||.|+.|.|+++.. ++.++||+||+|.+.++|.+|++.||+..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4678899999942 234789999999999999999998864 3567899999999999999999999999999
Q ss_pred CccccccCC
Q 004060 265 GKQCGVTPS 273 (776)
Q Consensus 265 gr~i~V~~a 273 (776)
|+.|.|.++
T Consensus 98 GR~i~v~~~ 106 (118)
T 3ue2_A 98 GRKVVAEVY 106 (118)
T ss_dssp TEECEEEEE
T ss_pred CcEEEEEEc
Confidence 999998765
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.3e-09 Score=93.52 Aligned_cols=51 Identities=25% Similarity=0.404 Sum_probs=46.0
Q ss_pred CCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCC
Q 004060 382 PASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (776)
Q Consensus 382 p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (776)
+..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|++||+.+++
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 3568999999999999999999998 35699999999999999999998665
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.88 E-value=2.4e-09 Score=95.87 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=57.0
Q ss_pred hhhccccCCCCCC----------ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccC
Q 004060 372 QVKTVFVDGLPAS----------WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (776)
Q Consensus 372 ~~~~l~V~nLp~~----------~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (776)
++++|.|.|+-.. -.+++|+++|++||.|..|.|.++. .+|||||+|.+.++|++|++.|||+.|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3467777776332 1246899999999999999997653 4899999999999999999999999999
Q ss_pred CCcc
Q 004060 442 EGDN 445 (776)
Q Consensus 442 g~~~ 445 (776)
|+.+
T Consensus 82 GR~i 85 (114)
T 3s6e_A 82 GKMI 85 (114)
T ss_dssp TEEC
T ss_pred CEEE
Confidence 7443
No 370
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.7e-09 Score=94.77 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=61.4
Q ss_pred hhhhccccCCCCCC-ChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCc-hHHHHHHHHHhC--CCccCCCcce
Q 004060 371 AQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT-HDAAVTCAKSIN--NAELGEGDNK 446 (776)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~-~~~A~~A~~~l~--g~~~~g~~~~ 446 (776)
.+.+.|+|+||+.. ++.++|+++|++||.|..|+|+.+. -+|||+|.+ ..+|..|+..|| +..|.+ ..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g--~~ 87 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRN--KE 87 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTS--SS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeC--cE
Confidence 34589999999999 9999999999999999999999874 479999999 899999999995 556665 33
Q ss_pred EEEEE
Q 004060 447 AKVRA 451 (776)
Q Consensus 447 ~~v~~ 451 (776)
+.+.+
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.2e-08 Score=88.93 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=56.3
Q ss_pred cCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCCC
Q 004060 206 KDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (776)
Q Consensus 206 ~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~ 276 (776)
..+++++|+++|.+||.|+.|.|+ ++++|||||+|.+.++|..||+.+++ +.++.|.|.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 468999999999999999999998 46799999999999999999998554 67999999887544
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.70 E-value=1.6e-08 Score=107.88 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=57.7
Q ss_pred cCcceEEEcC--CCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceec
Q 004060 194 RKEFEVFVGG--LDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (776)
Q Consensus 194 ~~~~tlfV~n--Lp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~ 264 (776)
....+|||+| |+..+|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++|++.||+..+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 3456799999 578999999999999999999987753 4799999999999999999999998773
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.67 E-value=2.7e-08 Score=88.93 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=62.7
Q ss_pred cceEEEcCCCcCC----------cHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 196 EFEVFVGGLDKDV----------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 196 ~~tlfV~nLp~~~----------te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
..+|.|.||=... .+++|+++|++||.|+.|.|.++. .+||+||+|.+.++|.+|++.||+..|.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568888884322 246899999999999999997642 58999999999999999999999999999
Q ss_pred ccccccCC
Q 004060 266 KQCGVTPS 273 (776)
Q Consensus 266 r~i~V~~a 273 (776)
+.|.|.++
T Consensus 83 R~i~v~~~ 90 (114)
T 3s6e_A 83 KMITAAYV 90 (114)
T ss_dssp EECEEEEE
T ss_pred EEEEEEEE
Confidence 99998764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=8.7e-08 Score=85.81 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=61.9
Q ss_pred cCcceEEEcCCCcC-CcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEecc-HHHHHHHhhhcc--CceecCcccc
Q 004060 194 RKEFEVFVGGLDKD-VVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFAT-VEQARQAVTELK--NPVINGKQCG 269 (776)
Q Consensus 194 ~~~~tlfV~nLp~~-~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s-~e~A~~Al~~l~--~~~l~gr~i~ 269 (776)
...+.|+|+||+.. ++.++|+++|++||.|..|.++.+.. +|||.|.+ ..+|..|+.+|+ +..|+|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45788999999999 99999999999999999999987644 59999999 899999999984 5667776655
Q ss_pred cc
Q 004060 270 VT 271 (776)
Q Consensus 270 V~ 271 (776)
+.
T Consensus 90 ~e 91 (121)
T 1owx_A 90 WE 91 (121)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=9.2e-08 Score=80.22 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=54.3
Q ss_pred hccccCCCCC----CChH----HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcc
Q 004060 374 KTVFVDGLPA----SWDE----DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (776)
Q Consensus 374 ~~l~V~nLp~----~~t~----~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (776)
-||+|..++. ++-. .+|.+.|.+||.|..|+|+.+ .+||+|.+.++|.+||. |||..|.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G--- 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN--- 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT---
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC---
Confidence 4566655541 2222 679999999999999999966 49999999999999998 99999987
Q ss_pred eEEEEEeccCC
Q 004060 446 KAKVRARLSRP 456 (776)
Q Consensus 446 ~~~v~~~~~~~ 456 (776)
+.+++.+.+|
T Consensus 76 -r~LkV~lkt~ 85 (91)
T 2dnr_A 76 -RTITIALKSP 85 (91)
T ss_dssp -EEEEEEECCC
T ss_pred -eEEEEEeCCC
Confidence 4455555543
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.49 E-value=1.1e-06 Score=88.62 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=55.7
Q ss_pred CChHHHHHHHHhhcCCeeEEEEeecCC----CCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceEE
Q 004060 384 SWDEDRVRELLKNYGEITKIELARNMP----SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (776)
Q Consensus 384 ~~t~~~L~~~F~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (776)
.-.+++|++.|.+||.|..|.|+++.. ++.++|++||+|.+.++|++|+..|||+.|.|+.+.+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~ 208 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 208 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEE
Confidence 346789999999999999999985544 45889999999999999999999999999998554433
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=3.5e-07 Score=76.69 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=59.7
Q ss_pred CcceEEEcCCCc----CCcH----HHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCc
Q 004060 195 KEFEVFVGGLDK----DVVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266 (776)
Q Consensus 195 ~~~tlfV~nLp~----~~te----~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr 266 (776)
...||+|.-++. ++-. .+|.+.|.+||.|+.++|+.+. +||+|.+.+.|.+|+. ||+..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 356788877662 2323 6799999999999999999753 8999999999999999 999999999
Q ss_pred cccccCCC
Q 004060 267 QCGVTPSQ 274 (776)
Q Consensus 267 ~i~V~~a~ 274 (776)
.|+|..+.
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998764
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=6.6e-07 Score=75.35 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=51.8
Q ss_pred hhhccccCCCCCC-----C-h---HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 372 QVKTVFVDGLPAS-----W-D---EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 372 ~~~~l~V~nLp~~-----~-t---~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
+.-||+|..++.. + . -.+|.+.|.+||.|..|+|+.+ -+||+|.+.++|.+||. |||..|.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3467888877632 2 2 1579999999999999999976 49999999999999998 99999987
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=9.9e-07 Score=74.30 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=60.1
Q ss_pred cCcceEEEcCCCcC-----CcH----HHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceec
Q 004060 194 RKEFEVFVGGLDKD-----VVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (776)
Q Consensus 194 ~~~~tlfV~nLp~~-----~te----~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~ 264 (776)
....||+|.-++.. +-. .+|.+.|.+||.|+.++|+.+. +||+|.+.+.|.+||. ||+..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34678999888632 222 5699999999999999999763 9999999999999999 9999999
Q ss_pred CccccccCC
Q 004060 265 GKQCGVTPS 273 (776)
Q Consensus 265 gr~i~V~~a 273 (776)
|+.|+|...
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999999764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.04 E-value=3.8e-06 Score=84.56 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=64.2
Q ss_pred ceEEEcCCC-----cCCcHHHHHHhhccCCceEEEEEeecCC----CCCCcceEEEEeccHHHHHHHhhhccCceecCcc
Q 004060 197 FEVFVGGLD-----KDVVGDDLRKVFSQVGEVTEVRLMMNPQ----TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (776)
Q Consensus 197 ~tlfV~nLp-----~~~te~dL~~~f~~~G~i~~v~i~~d~~----tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~ 267 (776)
..+.+.|+- ..-.+++|.+.|.+||.|..|.|+++.. ++.++|++||+|.+.++|.+|+..||+..|.|+.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 345555553 2345688999999999999999996544 4588999999999999999999999999999999
Q ss_pred ccccCC
Q 004060 268 CGVTPS 273 (776)
Q Consensus 268 i~V~~a 273 (776)
|.|...
T Consensus 205 i~~~~~ 210 (222)
T 3dxb_A 205 VVAEVY 210 (222)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 998765
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.1e-05 Score=69.22 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=59.9
Q ss_pred hccccCCCCCCChHHHHHHHHhhc-----CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNY-----GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
++|-|-|||..++...|+.|++++ |.|+.|.+..+ -+=|+|+|.+...|-+|.-.|||.+|.|
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecC
Confidence 789999999999999999999999 99999999988 5689999999999999999999999986
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=7.7e-05 Score=64.00 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=65.4
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccC-----CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQV-----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~-----G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i 268 (776)
...++|-|=|||..++...|+.|+..+ |.|+.|.++.+- +=|+|+|.+...|-+|.-.|++..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347889999999999999999999999 999999998763 349999999999999999999999999999
Q ss_pred ccc
Q 004060 269 GVT 271 (776)
Q Consensus 269 ~V~ 271 (776)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.0004 Score=59.16 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=71.0
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccC-----CceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQV-----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~-----G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
..+|.|.|||..+.++.|.-+|..- |.|..|.... +-|+|+|.+...|+++|++ ..+.|++..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 5679999999999999999999872 5888888763 4699999999999999984 466788899999
Q ss_pred cCC--CCCCcccccCcccccc
Q 004060 271 TPS--QDSDTLFLGNICKTWT 289 (776)
Q Consensus 271 ~~a--~~~~~l~V~nLp~~~t 289 (776)
.+. ....+|++.+|++.+.
T Consensus 79 ~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCCCCCCCCCSCCCCCC
T ss_pred EcCCCCCcceEeeecCCCCCC
Confidence 765 5567899999987653
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.65 E-value=0.0023 Score=53.80 Aligned_cols=54 Identities=17% Similarity=0.448 Sum_probs=45.5
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (776)
..++| ++|..+...||.++|+.||.| .|..+.| ..|||.|.+.+.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999965 4555544 499999999999999999775
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.57 E-value=0.0072 Score=50.85 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=57.3
Q ss_pred ceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCC--CcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK--NKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 197 ~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~--~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
++|.|++||+.+|++++.+.+..+..+.....+....+.+ .-.-|||.|.+.+++......+++..|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4699999999999999999999998887777766554433 33569999999999999999999987754
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.52 E-value=0.0067 Score=53.44 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=52.3
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
.+.|.|-++|... ...|...|++||.|+...... ..++..|.|.+..+|++||. .||..|.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 4778899999885 567888999999999887632 26799999999999999987 79999875
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.47 E-value=0.0053 Score=51.70 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=59.4
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCC--cccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
++|.|++||+.+|++++.+.+.....+....++....+.+ .-.-|+|.|.+.+++..-.+.++|+.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5789999999999999999999999888887776654432 235699999999999999999999988653
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.42 E-value=0.0038 Score=53.47 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=61.2
Q ss_pred cceEEEcCCCcCC-c----HHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccc
Q 004060 196 EFEVFVGGLDKDV-V----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (776)
Q Consensus 196 ~~tlfV~nLp~~~-t----e~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V 270 (776)
..+|+|.||+.++ + .+.|+.+|..|+++....+++. -.-..|.|.+.++|.+|-..||+..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3579999998754 2 3678999999999888887753 224799999999999999999999999999998
Q ss_pred cCCC
Q 004060 271 TPSQ 274 (776)
Q Consensus 271 ~~a~ 274 (776)
-.++
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7775
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.33 E-value=0.0071 Score=51.53 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=49.5
Q ss_pred hccccCCCCCCChHHHHHHHHhhc-----CCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNY-----GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (776)
++|.|.|||..+.++.|.-+|++- |.|..|.... +-|+|+|.+.+.|+..|+. ..+.|.+
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecC
Confidence 789999999999999999999882 6898888763 5899999999999999863 2344443
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.28 E-value=0.0044 Score=53.09 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=54.7
Q ss_pred hccccCCCCCCC-h----HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 374 KTVFVDGLPASW-D----EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 374 ~~l~V~nLp~~~-t----~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
++|+|.||+..+ . .+.++.+|..|+.+....+.+. =.-..|.|.+.++|.+|-..|++..|.|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 789999998765 2 3678999999999988887765 34789999999999999999999999874
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.99 E-value=0.0066 Score=51.26 Aligned_cols=54 Identities=17% Similarity=0.447 Sum_probs=45.5
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (776)
..++| ++|..+...||.++|+.||.| .|..+.+ ..|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 4555554 499999999999999999775
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.66 E-value=0.038 Score=48.66 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=56.4
Q ss_pred CcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecC-ccccccCC
Q 004060 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING-KQCGVTPS 273 (776)
Q Consensus 195 ~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~g-r~i~V~~a 273 (776)
..+.|.|-++|... ...|..+|++||.|+..... ....+..|.|.+..+|++||. .|+..|.+ -.|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45668999999885 66788899999999988862 235689999999999999999 58888874 45555543
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.36 E-value=0.019 Score=48.28 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=43.0
Q ss_pred EEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~ 259 (776)
||+-++|.++...||.++|+.||.|. |+.+-| ..|||.|.+.+.|..|+..+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999999543 555543 359999999999999999663
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.31 E-value=0.026 Score=47.74 Aligned_cols=70 Identities=7% Similarity=0.064 Sum_probs=52.3
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCC--CcceEEEEeccHHHHHHHhhhccCceecC
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKK--NKGFAFLRFATVEQARQAVTELKNPVING 265 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~--~~g~afV~F~s~e~A~~Al~~l~~~~l~g 265 (776)
..+|.|+.||+.+|++++.+.+..+-.+.....+....+.+ .-.-|||.|.+.++.....+.+++..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45699999999999999999888766654433333222221 22459999999999999999999877644
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.24 E-value=0.021 Score=48.26 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=43.3
Q ss_pred EEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc
Q 004060 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (776)
Q Consensus 199 lfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~ 259 (776)
||+-++|.++...||.++|+.||. ..|..+-| ..|||.|.+.+.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 444499999999999999999993 44555544 259999999999999999764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.67 E-value=0.075 Score=44.95 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=53.4
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCC--cccEEEEEeCchHHHHHHHHHhCCCccCCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (776)
+.+|.|+.||+.+|++++.+.+...=.+....++....+.+ .-..|||.|.+.+++..-.+.++|..|.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 36799999999999999988887765554444433322221 224689999999999999999999988653
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.95 E-value=0.055 Score=59.50 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=50.9
Q ss_pred hhhHHHHHhccCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhh
Q 004060 184 HHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257 (776)
Q Consensus 184 ~~~~~~~~~~~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~ 257 (776)
..+...+++.+..++|+|. .|..+++.+|.++|++||+|..+.+..+. ..||.|+|.+.+.+..++..
T Consensus 41 ~~~~~~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 41 FSEMQNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp CHHHHHHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred HHHHHHHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3445566667778889997 79999999999999999999999988542 47999999999999987764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.52 E-value=0.065 Score=58.91 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=41.4
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHH
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (776)
+.|+|. .+..+++.+|.++|++||.|..+.+-.+. ..||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 788997 78899999999999999999999887653 4799999999999887754
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.28 E-value=0.14 Score=45.64 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=48.1
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeE-EEEeecC--------CCC-----CcccEEEEEeCchHHHHHHHHHhCCCc
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNM--------PSA-----KRKDFGFVTFDTHDAAVTCAKSINNAE 439 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~--------~~g-----~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (776)
..|.|-+.|...+ ..|.+.|++||.|.. +.+.... ... ...++..|+|.+..+|++||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 5677888877655 457778999999876 2211100 000 136789999999999999987 89999
Q ss_pred cCCC
Q 004060 440 LGEG 443 (776)
Q Consensus 440 ~~g~ 443 (776)
|.|.
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9873
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.84 E-value=0.16 Score=45.27 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=52.0
Q ss_pred cceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeec---------CCCCC-----CcceEEEEeccHHHHHHHhhhccCc
Q 004060 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN---------PQTKK-----NKGFAFLRFATVEQARQAVTELKNP 261 (776)
Q Consensus 196 ~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d---------~~tg~-----~~g~afV~F~s~e~A~~Al~~l~~~ 261 (776)
+..|.|=+.|...+ ..|..+|++||.|++-.-+.. ....+ ...+..|+|.+..+|.+||. .|+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 44578888876655 466778999999876221110 00011 24678999999999999999 5999
Q ss_pred eecCccccccCC
Q 004060 262 VINGKQCGVTPS 273 (776)
Q Consensus 262 ~l~gr~i~V~~a 273 (776)
+|+|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999876666543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.82 E-value=5 Score=44.81 Aligned_cols=57 Identities=18% Similarity=0.410 Sum_probs=45.7
Q ss_pred hhccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCC
Q 004060 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438 (776)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 438 (776)
...++|+ +|..+...+|.++|+.||.| .|..+. ...|||.|.+.+.|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHhC
Confidence 3566665 88899999999999999954 555443 348999999999999999988643
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.39 E-value=28 Score=28.30 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=47.3
Q ss_pred cCcceEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhc
Q 004060 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258 (776)
Q Consensus 194 ~~~~tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l 258 (776)
+..+-|.|-|+|..+-..++.-.....|--..|..+ -|.|.|.|.+.+....|+.+|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 456778899999999988888777888877777765 456999999999999999876
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=57.44 E-value=20 Score=29.16 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=46.7
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCC
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 438 (776)
+-|.|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++..-|+..|-+.
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEET
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhc
Confidence 556788999998888887777788877778776 578999999999999999876443
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=54.36 E-value=15 Score=40.94 Aligned_cols=53 Identities=26% Similarity=0.378 Sum_probs=42.4
Q ss_pred eEEEcCCCcCCcHHHHHHhhccCCceEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhcc
Q 004060 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (776)
Q Consensus 198 tlfV~nLp~~~te~dL~~~f~~~G~i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~ 259 (776)
.++|+ +|..+...+|.++|+.||.| .|..+. ...|||.|.+.+.|..+++.++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 35554 99999999999999999954 444442 3469999999999999999875
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.39 E-value=1.4e+02 Score=24.39 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=36.0
Q ss_pred eEEEEEeecCCCCCCcceEEEEeccHHHHHHHhhhccCceecCccccccCCCCCCcccccCccccccHHHHHHHHh
Q 004060 223 VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298 (776)
Q Consensus 223 i~~v~i~~d~~tg~~~g~afV~F~s~e~A~~Al~~l~~~~l~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~ 298 (776)
|..|.+.. ...||.||++...++...+++.+.+. +-||++ .++.+++..++.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV----------------~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV----------------RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE----------------EEECSS---CCCHHHHHHHHC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc----------------eEeCCC---CCCHHHHHHHhC
Confidence 55555542 37999999999999888888865543 234443 667777777764
No 406
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=27.11 E-value=13 Score=42.25 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=6.0
Q ss_pred CCCCcceEEEEe
Q 004060 234 TKKNKGFAFLRF 245 (776)
Q Consensus 234 tg~~~g~afV~F 245 (776)
|-+++-..||.|
T Consensus 397 T~~sr~vQFl~F 408 (649)
T 3tj1_A 397 TYYTRSIQYIMF 408 (649)
T ss_dssp SCSCSSTTHHHH
T ss_pred cccCccHHHHHH
Confidence 344455555555
No 407
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.93 E-value=20 Score=30.56 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=3.6
Q ss_pred CCCccccCCCCCCCc
Q 004060 1 MPPRTVKRGAAGPRR 15 (776)
Q Consensus 1 ~p~~~~k~~~~~~~~ 15 (776)
||||.++....+++.
T Consensus 1 m~pk~~~~~k~~~~~ 15 (108)
T 3iz6_V 1 MAPKKDKAPPPSSKP 15 (108)
T ss_dssp --------CCCCCCC
T ss_pred CCCcccccCHHHHHH
Confidence 899877766655433
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.96 E-value=1.4e+02 Score=22.54 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=41.4
Q ss_pred hccccCCCCCCChHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHH
Q 004060 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (776)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (776)
.+|.|.++.-..-...|...+.. -.|..+.+-.. .+.+.|+|.+.+....||+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 56788888877778889999998 77887777543 56788998866667777764
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.07 E-value=1.8e+02 Score=22.45 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=33.5
Q ss_pred ChHHHHHHHHhhcC-----CeeEEEEeecCCCCCcccEEEEEeCchHHHHHHHHHhCCCccCCCcceE
Q 004060 385 WDEDRVRELLKNYG-----EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (776)
Q Consensus 385 ~t~~~L~~~F~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (776)
++..+|..++..-+ .|-.|.|.. .|.||+-.... |..++..|++..+.|..+.+
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGK-GPHVLKVMKNTTVKGKQLKV 71 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTC-HHHHHHHHTTCCC---CCCE
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHH-HHHHHHHhccccCcCceEEE
Confidence 55566666665543 466788763 39999987654 66778889998887754433
Done!