BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004061
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 81 DPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQII 137
DPYV + + + RTR N PVWNE F L N LEI + D + + +
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 87
Query: 138 GTAAIPAHTIATGE 151
GTA ++ GE
Sbjct: 88 GTATFTVSSMKVGE 101
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 81 DPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQII 137
DPYV + + + RTR N PVWNE F L N LEI + D + + +
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 102
Query: 138 GTAAIPAHTIATGE 151
GTA ++ GE
Sbjct: 103 GTATFTVSSMKVGE 116
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 81 DPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQII 137
DPYV + + + RTR N PVWNE F L N LEI + D + + +
Sbjct: 43 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETL 102
Query: 138 GTAAIPAHTIATGE 151
GTA ++ GE
Sbjct: 103 GTATFTVSSMKVGE 116
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD 130
DPYVTV V + T RT+ + + PVW E+F+ + ++++V D+D
Sbjct: 39 DPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 81 DPYVTV-VVPQATVA---RTRVLKNSQEPVWNE----HFNIPLAHPLSNLEIQVKDDDVF 132
DPYV + ++P A+ + RT+ L+N++ PVWNE H L I V D+D F
Sbjct: 51 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKF 110
Query: 133 G-AQIIG 138
G + IG
Sbjct: 111 GHNEFIG 117
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 81 DPYVTV-VVPQATVA---RTRVLKNSQEPVWNE----HFNIPLAHPLSNLEIQVKDDDVF 132
DPYV + ++P A+ + RT+ L+N++ PVWNE H L I V D+D F
Sbjct: 49 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKF 108
Query: 133 G-AQIIG 138
G + IG
Sbjct: 109 GHNEFIG 115
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 81 DPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V ++P + T+V + + PV+NE F + + L + V D D F
Sbjct: 64 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 123
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 124 DIIGEFKVPMNTVDFGHVTEEWRD 147
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 81 DPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V ++P + T+V + + PV+NE F + + L + V D D F
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 115
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 116 DIIGEFKVPMNTVDFGHVTEEWRD 139
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 81 DPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V ++P + T+V + + PV+NE F + + L + V D D F
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 115
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 116 DIIGEFKVPMNTVDFGHVTEEWRD 139
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 81 DPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V ++P + T+V + + PV+NE F + + L + V D D F
Sbjct: 39 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKH 98
Query: 136 -IIGTAAIPAHTIATGELISRWYD 158
IIG +P +T+ G + W D
Sbjct: 99 DIIGEFKVPMNTVDFGHVTEEWRD 122
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 81 DPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFGAQ 135
DPYV V + + T+V + + PV+NE F + + L + V D D F
Sbjct: 41 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKH 100
Query: 136 -IIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPC 182
IIG +P +T+ G + W D L++ P
Sbjct: 101 DIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT 148
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHF 111
DPY+TV V Q V +T + + +P +NE F
Sbjct: 61 DPYLTVSVDQVRVGQTSTKQKTNKPTYNEEF 91
>pdb|3HSI|A Chain A, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|B Chain B, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|C Chain C, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
Length = 458
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 712 HAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQ 764
H KG+ VDD Y+++ N+N R A D E + Y P +++ Q
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPR--AWRLDAENGLLIYDPQQQLLAQVEKEQNQ 414
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL-AHPL---SNLEIQVKDDDVFGA-Q 135
DP V+V+ +V N PVWNE L PL S+L I VKD + G +
Sbjct: 28 DPIVSVIFKDEKKKTKKV-DNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNK 86
Query: 136 IIGTAAI 142
+IGTA +
Sbjct: 87 LIGTATV 93
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 81 DPYVTV-VVPQA---TVARTRVLKNSQEPVWNEH--FNIPLAHPLSNLEIQVKD------ 128
DPYV + ++P T +TR +K + PVWNE FN+ L ++V D
Sbjct: 42 DPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSR 101
Query: 129 DDVFGAQIIGTAAI 142
+D GA G + +
Sbjct: 102 NDFMGAMSFGVSEL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,991,152
Number of Sequences: 62578
Number of extensions: 1014711
Number of successful extensions: 2073
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 17
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)