Query 004061
Match_columns 776
No_of_seqs 417 out of 3246
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 4E-126 9E-131 1078.5 69.2 767 7-775 4-781 (868)
2 PLN02270 phospholipase D alpha 100.0 3E-113 7E-118 974.8 63.8 700 13-775 4-720 (808)
3 PLN02352 phospholipase D epsil 100.0 1E-107 3E-112 928.4 61.1 653 11-775 4-669 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 8.3E-96 2E-100 825.9 52.0 689 7-776 66-767 (887)
5 PLN02866 phospholipase D 100.0 1.4E-69 3.1E-74 626.7 44.8 485 204-775 322-935 (1068)
6 PRK12452 cardiolipin synthetas 100.0 3.9E-52 8.4E-57 473.6 31.9 337 203-754 131-467 (509)
7 PRK01642 cls cardiolipin synth 100.0 6.4E-51 1.4E-55 463.4 33.3 334 203-754 107-441 (483)
8 PRK11263 cardiolipin synthase 100.0 1.7E-49 3.8E-54 439.6 31.5 327 207-754 3-329 (411)
9 PHA02820 phospholipase-D-like 100.0 3.1E-40 6.7E-45 367.2 30.4 346 241-775 25-379 (424)
10 PRK09428 pssA phosphatidylseri 100.0 1.1E-38 2.4E-43 355.5 27.0 358 209-757 22-400 (451)
11 COG1502 Cls Phosphatidylserine 100.0 5.3E-37 1.2E-41 348.3 31.0 338 209-754 57-396 (438)
12 PHA03003 palmytilated EEV memb 100.0 3.5E-37 7.5E-42 339.0 26.1 331 241-775 30-362 (369)
13 PRK05443 polyphosphate kinase; 99.9 4.2E-21 9.1E-26 223.3 26.4 271 241-753 347-634 (691)
14 TIGR03705 poly_P_kin polyphosp 99.9 5.1E-21 1.1E-25 221.2 21.5 268 241-753 338-625 (672)
15 cd04015 C2_plant_PLD C2 domain 99.9 3E-21 6.6E-26 187.6 15.9 157 12-180 2-158 (158)
16 KOG3603 Predicted phospholipas 99.9 6.9E-20 1.5E-24 194.1 24.9 359 242-775 72-438 (456)
17 cd04016 C2_Tollip C2 domain pr 99.8 8.6E-19 1.9E-23 162.0 14.1 117 17-179 2-121 (121)
18 cd04042 C2A_MCTP_PRT C2 domain 99.7 2.3E-17 4.9E-22 153.4 15.3 120 18-181 1-121 (121)
19 cd08379 C2D_MCTP_PRT_plant C2 99.7 3.2E-17 6.8E-22 152.6 14.3 114 19-175 2-125 (126)
20 cd04013 C2_SynGAP_like C2 doma 99.7 6.3E-17 1.4E-21 153.7 16.1 126 14-186 8-145 (146)
21 cd08682 C2_Rab11-FIP_classI C2 99.7 5.2E-17 1.1E-21 152.2 13.5 117 19-178 1-126 (126)
22 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.4E-16 3E-21 149.2 15.9 120 17-182 4-125 (126)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.2E-16 2.6E-21 148.5 13.9 118 19-179 2-121 (121)
24 cd08681 C2_fungal_Inn1p-like C 99.7 1.4E-16 3.1E-21 147.3 11.7 116 17-179 1-118 (118)
25 cd08678 C2_C21orf25-like C2 do 99.7 8E-16 1.7E-20 144.1 15.0 104 80-183 18-123 (126)
26 cd04019 C2C_MCTP_PRT_plant C2 99.7 8E-16 1.7E-20 148.1 14.2 121 19-182 2-134 (150)
27 cd04022 C2A_MCTP_PRT_plant C2 99.7 9.5E-16 2.1E-20 143.8 13.4 119 18-180 1-126 (127)
28 cd00138 PLDc Phospholipase D. 99.7 1.3E-15 2.8E-20 151.0 14.6 145 241-459 20-169 (176)
29 cd04014 C2_PKC_epsilon C2 doma 99.7 1.9E-15 4.1E-20 142.8 14.9 127 15-182 2-131 (132)
30 cd08377 C2C_MCTP_PRT C2 domain 99.6 2.7E-15 6E-20 138.9 15.0 117 17-179 1-118 (119)
31 cd08378 C2B_MCTP_PRT_plant C2 99.6 1.4E-15 3E-20 141.4 12.9 97 80-179 17-119 (121)
32 cd04044 C2A_Tricalbin-like C2 99.6 1.4E-15 3E-20 141.9 12.6 121 17-181 2-124 (124)
33 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.8E-15 3.9E-20 143.1 12.9 120 18-180 1-133 (133)
34 cd08376 C2B_MCTP_PRT C2 domain 99.6 4.4E-15 9.5E-20 136.9 15.0 113 18-180 1-115 (116)
35 cd04036 C2_cPLA2 C2 domain pre 99.6 2.8E-15 6.1E-20 138.9 13.6 113 19-179 2-117 (119)
36 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 3.4E-15 7.3E-20 138.8 14.1 117 19-178 2-120 (121)
37 KOG1030 Predicted Ca2+-depende 99.6 9.8E-16 2.1E-20 144.8 9.6 97 14-153 3-100 (168)
38 PHA02820 phospholipase-D-like 99.6 2.4E-15 5.2E-20 168.1 14.5 162 520-773 4-166 (424)
39 cd04024 C2A_Synaptotagmin-like 99.6 5.5E-15 1.2E-19 138.6 13.9 120 17-179 1-128 (128)
40 cd08391 C2A_C2C_Synaptotagmin_ 99.6 4.9E-15 1.1E-19 137.5 13.4 120 17-179 1-121 (121)
41 PRK12452 cardiolipin synthetas 99.6 9.8E-16 2.1E-20 175.4 10.5 153 212-460 329-481 (509)
42 cd08381 C2B_PI3K_class_II C2 d 99.6 3.1E-15 6.8E-20 139.2 11.9 106 11-159 7-121 (122)
43 cd08677 C2A_Synaptotagmin-13 C 99.6 2.5E-15 5.4E-20 137.0 10.7 100 15-159 12-118 (118)
44 PHA03003 palmytilated EEV memb 99.6 3.4E-15 7.3E-20 164.9 13.2 143 243-460 217-364 (369)
45 cd08375 C2_Intersectin C2 doma 99.6 1.1E-14 2.4E-19 138.0 14.7 115 16-179 14-135 (136)
46 cd04028 C2B_RIM1alpha C2 domai 99.6 6.1E-15 1.3E-19 140.6 12.5 109 12-162 24-139 (146)
47 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 9.1E-15 2E-19 136.3 13.4 117 18-177 1-122 (123)
48 cd08395 C2C_Munc13 C2 domain t 99.6 8.1E-15 1.8E-19 135.3 12.0 99 18-159 1-110 (120)
49 PRK13912 nuclease NucT; Provis 99.6 1.8E-14 3.9E-19 142.9 15.0 141 241-459 32-174 (177)
50 cd08373 C2A_Ferlin C2 domain f 99.6 2.2E-14 4.8E-19 134.5 14.6 104 80-186 15-122 (127)
51 cd04046 C2_Calpain C2 domain p 99.6 4E-14 8.6E-19 132.6 15.8 122 16-182 2-124 (126)
52 cd08685 C2_RGS-like C2 domain 99.6 9.8E-15 2.1E-19 135.1 10.4 105 12-159 7-119 (119)
53 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.6E-14 5.5E-19 133.5 11.9 103 15-159 14-122 (124)
54 cd08387 C2A_Synaptotagmin-8 C2 99.6 2.1E-14 4.5E-19 134.1 11.3 102 16-159 15-122 (124)
55 cd08688 C2_KIAA0528-like C2 do 99.6 2E-14 4.3E-19 131.3 10.4 100 19-161 1-109 (110)
56 cd04050 C2B_Synaptotagmin-like 99.5 3.8E-14 8.3E-19 128.3 12.0 97 19-160 2-101 (105)
57 cd04043 C2_Munc13_fungal C2 do 99.5 1.1E-13 2.3E-18 129.7 14.7 115 18-182 2-123 (126)
58 cd04029 C2A_SLP-4_5 C2 domain 99.5 4E-14 8.6E-19 132.3 11.4 103 15-159 13-124 (125)
59 cd08382 C2_Smurf-like C2 domai 99.5 5.3E-14 1.1E-18 131.2 12.2 116 19-177 2-122 (123)
60 cd04045 C2C_Tricalbin-like C2 99.5 5E-14 1.1E-18 130.7 12.0 104 17-163 1-105 (120)
61 cd08393 C2A_SLP-1_2 C2 domain 99.5 3.6E-14 7.7E-19 132.7 11.0 102 16-159 14-124 (125)
62 cd04027 C2B_Munc13 C2 domain s 99.5 9.2E-14 2E-18 130.3 12.9 114 18-177 2-127 (127)
63 PRK13912 nuclease NucT; Provis 99.5 1.7E-14 3.8E-19 143.0 8.4 141 560-775 32-173 (177)
64 cd08680 C2_Kibra C2 domain fou 99.5 4.8E-14 1E-18 131.2 10.6 102 16-159 13-124 (124)
65 cd04010 C2B_RasA3 C2 domain se 99.5 7E-14 1.5E-18 134.0 11.8 81 80-160 19-121 (148)
66 cd04017 C2D_Ferlin C2 domain f 99.5 1.7E-13 3.7E-18 130.0 14.3 118 18-182 2-134 (135)
67 cd08383 C2A_RasGAP C2 domain ( 99.5 1.5E-13 3.3E-18 126.7 13.7 96 80-179 18-117 (117)
68 cd08392 C2A_SLP-3 C2 domain fi 99.5 5E-14 1.1E-18 132.1 10.4 102 16-159 14-127 (128)
69 cd08394 C2A_Munc13 C2 domain f 99.5 9.7E-14 2.1E-18 127.8 11.9 97 17-160 2-100 (127)
70 cd04051 C2_SRC2_like C2 domain 99.5 6.4E-14 1.4E-18 131.0 11.0 113 18-175 1-125 (125)
71 cd08690 C2_Freud-1 C2 domain f 99.5 2.1E-13 4.6E-18 131.0 14.3 99 80-181 25-138 (155)
72 cd04041 C2A_fungal C2 domain f 99.5 6.1E-14 1.3E-18 128.3 9.8 98 17-159 1-106 (111)
73 cd04039 C2_PSD C2 domain prese 99.5 9.5E-14 2.1E-18 126.2 10.6 95 17-150 1-98 (108)
74 cd04031 C2A_RIM1alpha C2 domai 99.5 1.1E-13 2.3E-18 129.3 11.3 101 16-159 15-124 (125)
75 cd04030 C2C_KIAA1228 C2 domain 99.5 1.1E-13 2.4E-18 129.7 11.3 101 17-159 16-126 (127)
76 cd04018 C2C_Ferlin C2 domain t 99.5 7.2E-14 1.6E-18 134.2 10.1 111 18-158 1-114 (151)
77 cd08521 C2A_SLP C2 domain firs 99.5 1.1E-13 2.3E-18 129.0 10.7 103 15-159 12-123 (123)
78 cd04040 C2D_Tricalbin-like C2 99.5 2.7E-13 5.8E-18 124.7 12.0 100 19-160 1-102 (115)
79 cd08388 C2A_Synaptotagmin-4-11 99.5 3.1E-13 6.7E-18 126.9 12.5 102 16-159 15-126 (128)
80 cd04052 C2B_Tricalbin-like C2 99.5 3.2E-13 7E-18 123.5 12.0 99 78-182 11-111 (111)
81 cd04049 C2_putative_Elicitor-r 99.5 2.6E-13 5.6E-18 126.7 11.3 100 17-159 1-106 (124)
82 cd08386 C2A_Synaptotagmin-7 C2 99.5 3E-13 6.6E-18 126.4 11.8 102 16-159 15-123 (125)
83 PRK01642 cls cardiolipin synth 99.5 1.6E-13 3.4E-18 157.1 11.6 138 241-460 317-455 (483)
84 cd08692 C2B_Tac2-N C2 domain s 99.5 1.1E-13 2.3E-18 129.4 8.1 109 15-166 12-128 (135)
85 cd08407 C2B_Synaptotagmin-13 C 99.5 7.8E-14 1.7E-18 132.0 7.0 110 15-166 13-130 (138)
86 cd08390 C2A_Synaptotagmin-15-1 99.5 4.1E-13 8.9E-18 125.1 11.3 102 16-159 13-121 (123)
87 cd08406 C2B_Synaptotagmin-12 C 99.5 1.2E-13 2.5E-18 130.8 7.5 107 16-166 14-128 (136)
88 cd08389 C2A_Synaptotagmin-14_1 99.5 5.1E-13 1.1E-17 124.7 11.7 100 17-159 16-122 (124)
89 cd00138 PLDc Phospholipase D. 99.5 2.7E-13 5.9E-18 134.4 10.3 146 559-775 19-168 (176)
90 cd08384 C2B_Rabphilin_Doc2 C2 99.4 1.3E-13 2.9E-18 130.3 7.1 108 15-166 11-126 (133)
91 cd04011 C2B_Ferlin C2 domain s 99.4 6.7E-13 1.5E-17 121.4 11.3 81 80-161 21-110 (111)
92 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.4 4.7E-13 1E-17 130.7 10.5 103 15-159 25-136 (162)
93 cd08404 C2B_Synaptotagmin-4 C2 99.4 1.9E-13 4.2E-18 129.7 7.2 108 15-166 13-128 (136)
94 cd08676 C2A_Munc13-like C2 dom 99.4 5.8E-13 1.3E-17 128.1 10.5 99 15-159 26-153 (153)
95 KOG1028 Ca2+-dependent phospho 99.4 1.1E-12 2.4E-17 146.5 13.9 130 14-185 164-299 (421)
96 cd04032 C2_Perforin C2 domain 99.4 1.1E-12 2.4E-17 122.4 11.5 99 6-148 17-118 (127)
97 cd04038 C2_ArfGAP C2 domain pr 99.4 1.1E-12 2.3E-17 125.6 11.6 90 17-150 2-92 (145)
98 cd04026 C2_PKC_alpha_gamma C2 99.4 1.2E-12 2.6E-17 123.4 11.8 110 11-163 7-123 (131)
99 PF13091 PLDc_2: PLD-like doma 99.4 5.1E-13 1.1E-17 124.8 8.9 126 566-773 1-126 (126)
100 cd08402 C2B_Synaptotagmin-1 C2 99.4 2.1E-13 4.5E-18 129.5 6.3 108 15-166 13-128 (136)
101 cd00275 C2_PLC_like C2 domain 99.4 3.5E-12 7.5E-17 119.6 14.2 116 18-179 3-127 (128)
102 cd08675 C2B_RasGAP C2 domain s 99.4 1.1E-12 2.4E-17 124.5 10.7 99 19-160 1-119 (137)
103 cd04021 C2_E3_ubiquitin_ligase 99.4 3E-12 6.5E-17 119.7 13.4 97 80-177 22-124 (125)
104 PF13091 PLDc_2: PLD-like doma 99.4 1.9E-12 4E-17 120.9 11.9 124 247-456 1-126 (126)
105 cd00276 C2B_Synaptotagmin C2 d 99.4 2.9E-13 6.3E-18 127.9 6.3 107 16-166 13-127 (134)
106 KOG0696 Serine/threonine prote 99.4 1.8E-13 3.8E-18 144.5 5.0 106 14-162 177-289 (683)
107 cd08403 C2B_Synaptotagmin-3-5- 99.4 6.1E-13 1.3E-17 126.0 7.9 108 15-166 12-127 (134)
108 cd08405 C2B_Synaptotagmin-7 C2 99.4 6E-13 1.3E-17 126.4 7.7 108 15-166 13-128 (136)
109 cd08691 C2_NEDL1-like C2 domai 99.4 6.3E-12 1.4E-16 118.9 13.9 115 18-177 2-136 (137)
110 PRK11263 cardiolipin synthase 99.4 2.3E-12 4.9E-17 143.8 11.6 135 241-457 205-340 (411)
111 cd08409 C2B_Synaptotagmin-15 C 99.4 1.1E-12 2.4E-17 124.6 7.4 106 16-164 14-127 (137)
112 cd08410 C2B_Synaptotagmin-17 C 99.4 7.3E-13 1.6E-17 125.6 6.0 109 15-166 12-128 (135)
113 cd04009 C2B_Munc13-like C2 dom 99.4 3.6E-12 7.8E-17 120.6 10.4 90 17-148 16-117 (133)
114 cd08408 C2B_Synaptotagmin-14_1 99.3 1.1E-12 2.4E-17 124.7 6.4 107 16-165 14-129 (138)
115 cd04037 C2E_Ferlin C2 domain f 99.3 4.2E-12 9E-17 118.6 9.9 118 18-182 1-121 (124)
116 PLN03200 cellulose synthase-in 99.3 4.1E-12 8.9E-17 160.0 11.2 122 12-181 1975-2101(2102)
117 cd08686 C2_ABR C2 domain in th 99.3 1.9E-11 4E-16 111.3 12.5 66 80-146 15-92 (118)
118 cd04048 C2A_Copine C2 domain f 99.3 7.1E-12 1.5E-16 116.3 9.9 80 80-159 21-112 (120)
119 KOG2059 Ras GTPase-activating 99.3 4E-12 8.8E-17 141.8 9.5 132 16-191 4-136 (800)
120 cd04035 C2A_Rabphilin_Doc2 C2 99.3 1.9E-11 4.2E-16 113.9 11.7 100 16-157 14-121 (123)
121 cd04047 C2B_Copine C2 domain s 99.1 3.9E-10 8.5E-15 102.8 9.5 69 80-149 21-100 (110)
122 PF00168 C2: C2 domain; Inter 99.1 2.9E-10 6.2E-15 97.7 7.7 81 19-141 1-85 (85)
123 PRK05443 polyphosphate kinase; 99.0 1E-09 2.2E-14 128.7 12.3 131 564-774 351-493 (691)
124 KOG1011 Neurotransmitter relea 99.0 4.2E-10 9E-15 123.6 8.3 122 15-182 293-426 (1283)
125 KOG3603 Predicted phospholipas 99.0 2.8E-09 6.1E-14 114.2 13.8 163 232-461 270-441 (456)
126 cd00030 C2 C2 domain. The C2 d 99.0 3E-09 6.5E-14 93.3 10.3 80 80-159 20-102 (102)
127 smart00239 C2 Protein kinase C 98.9 5.1E-09 1.1E-13 92.3 10.2 72 80-151 21-96 (101)
128 PLN02223 phosphoinositide phos 98.9 1.6E-08 3.5E-13 113.6 14.3 96 80-179 435-536 (537)
129 COG1502 Cls Phosphatidylserine 98.9 6.2E-09 1.4E-13 118.5 11.2 137 245-460 273-410 (438)
130 KOG1031 Predicted Ca2+-depende 98.9 9.1E-09 2E-13 112.1 10.8 169 15-239 1-184 (1169)
131 COG5038 Ca2+-dependent lipid-b 98.9 1E-08 2.2E-13 121.2 12.0 135 15-193 434-570 (1227)
132 KOG1028 Ca2+-dependent phospho 98.9 2.4E-09 5.3E-14 119.8 6.3 107 16-166 297-411 (421)
133 COG5038 Ca2+-dependent lipid-b 98.8 9.1E-09 2E-13 121.6 9.5 122 16-181 1039-1162(1227)
134 PLN02952 phosphoinositide phos 98.8 3.6E-08 7.9E-13 113.0 14.2 94 80-179 497-596 (599)
135 KOG0169 Phosphoinositide-speci 98.7 5.5E-08 1.2E-12 111.2 11.6 98 80-181 641-745 (746)
136 cd08374 C2F_Ferlin C2 domain s 98.7 5.2E-08 1.1E-12 91.3 9.1 71 80-150 25-124 (133)
137 PLN02230 phosphoinositide phos 98.7 1E-07 2.2E-12 109.2 13.1 96 80-179 496-597 (598)
138 PLN02222 phosphoinositide phos 98.7 1.8E-07 3.9E-12 107.1 14.0 96 80-179 479-580 (581)
139 PRK09428 pssA phosphatidylseri 98.7 1.3E-07 2.8E-12 106.7 12.7 142 242-458 251-407 (451)
140 PLN02228 Phosphoinositide phos 98.7 2.2E-07 4.7E-12 106.1 14.2 99 80-182 458-563 (567)
141 smart00155 PLDc Phospholipase 98.6 4.1E-08 8.8E-13 66.2 3.0 26 709-734 3-28 (28)
142 PF00614 PLDc: Phospholipase D 98.6 2.3E-08 5.1E-13 66.6 1.4 25 364-396 3-27 (28)
143 cd08689 C2_fungal_Pkc1p C2 dom 98.5 3.7E-07 8E-12 80.6 8.9 65 80-148 23-87 (109)
144 KOG3964 Phosphatidylglycerolph 98.4 7.4E-06 1.6E-10 87.1 16.6 129 241-399 38-171 (469)
145 PF07894 DUF1669: Protein of u 98.4 3.3E-06 7.2E-11 87.9 12.1 163 210-457 117-279 (284)
146 PF13918 PLDc_3: PLD-like doma 98.3 5.8E-06 1.2E-10 80.5 12.0 61 560-634 81-147 (177)
147 KOG1328 Synaptic vesicle prote 98.3 1.7E-07 3.6E-12 105.2 0.5 91 94-186 179-307 (1103)
148 KOG1264 Phospholipase C [Lipid 98.2 7.3E-06 1.6E-10 93.3 11.0 103 80-186 1085-1195(1267)
149 PF00614 PLDc: Phospholipase D 98.1 9.8E-07 2.1E-11 58.9 1.1 26 709-734 3-28 (28)
150 KOG1328 Synaptic vesicle prote 98.1 1.2E-06 2.6E-11 98.5 2.0 91 16-148 946-1048(1103)
151 TIGR03705 poly_P_kin polyphosp 97.9 6.4E-05 1.4E-09 88.4 12.7 131 564-774 342-484 (672)
152 smart00155 PLDc Phospholipase 97.9 1.1E-05 2.4E-10 54.3 2.8 24 364-395 3-26 (28)
153 PF13090 PP_kinase_C: Polyphos 97.8 0.0016 3.4E-08 69.8 19.4 139 241-455 17-161 (352)
154 KOG0905 Phosphoinositide 3-kin 97.7 3.4E-05 7.5E-10 91.3 4.4 108 10-159 1517-1633(1639)
155 KOG2059 Ras GTPase-activating 97.5 0.00015 3.3E-09 82.4 7.1 108 80-187 151-283 (800)
156 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00021 4.6E-09 65.3 5.9 80 80-159 33-143 (143)
157 KOG1011 Neurotransmitter relea 97.4 0.00037 8E-09 77.9 8.1 80 80-159 1145-1235(1283)
158 COG0855 Ppk Polyphosphate kina 97.4 0.018 3.8E-07 65.9 20.5 136 241-454 351-494 (696)
159 PF13918 PLDc_3: PLD-like doma 97.3 0.00094 2E-08 65.2 8.9 57 243-305 83-140 (177)
160 KOG1327 Copine [Signal transdu 97.2 0.00049 1.1E-08 77.4 6.1 126 80-209 157-297 (529)
161 KOG3837 Uncharacterized conser 97.2 0.00026 5.7E-09 75.8 3.8 98 80-180 388-503 (523)
162 PF07894 DUF1669: Protein of u 97.1 0.0033 7.1E-08 65.9 11.1 134 559-750 132-265 (284)
163 KOG2060 Rab3 effector RIM1 and 97.1 0.0006 1.3E-08 72.7 5.2 107 16-163 268-381 (405)
164 KOG1329 Phospholipase D1 [Lipi 97.0 0.0038 8.3E-08 73.7 11.4 152 237-400 561-728 (887)
165 KOG1013 Synaptic vesicle prote 97.0 0.00059 1.3E-08 71.5 4.2 100 16-159 232-339 (362)
166 PLN02964 phosphatidylserine de 97.0 0.0012 2.6E-08 77.2 6.6 85 80-164 68-156 (644)
167 PLN02866 phospholipase D 96.9 0.0025 5.4E-08 76.9 9.2 61 560-628 343-404 (1068)
168 PLN03008 Phospholipase D delta 96.9 0.0022 4.9E-08 75.9 7.7 70 233-305 557-633 (868)
169 KOG1326 Membrane-associated pr 96.8 0.00082 1.8E-08 79.3 3.8 87 18-146 614-703 (1105)
170 COG3886 Predicted HKD family n 96.8 0.011 2.4E-07 57.7 10.9 141 241-458 38-179 (198)
171 PLN02352 phospholipase D epsil 96.7 0.0029 6.4E-08 74.6 7.3 62 241-305 452-519 (758)
172 KOG1013 Synaptic vesicle prote 96.5 0.00066 1.4E-08 71.2 0.1 124 17-182 93-231 (362)
173 cd08684 C2A_Tac2-N C2 domain f 96.4 0.0024 5.3E-08 54.4 2.9 71 86-158 29-102 (103)
174 PLN02270 phospholipase D alpha 96.1 0.017 3.8E-07 68.5 8.8 65 241-305 498-569 (808)
175 PF11495 Regulator_TrmB: Archa 95.9 0.039 8.4E-07 57.4 9.6 50 241-307 9-58 (233)
176 PF10358 NT-C2: N-terminal C2 94.9 0.78 1.7E-05 43.5 14.1 104 81-188 25-143 (143)
177 KOG1326 Membrane-associated pr 94.6 0.0075 1.6E-07 71.5 -0.8 79 80-160 227-316 (1105)
178 KOG1265 Phospholipase C [Lipid 94.6 0.067 1.4E-06 62.9 6.7 88 14-150 700-797 (1189)
179 PF12416 DUF3668: Cep120 prote 94.5 0.4 8.7E-06 52.3 12.1 104 80-184 18-136 (340)
180 PF13090 PP_kinase_C: Polyphos 94.3 0.16 3.5E-06 54.7 8.4 95 606-754 51-152 (352)
181 cd08687 C2_PKN-like C2 domain 93.1 0.68 1.5E-05 40.1 8.5 84 80-179 9-92 (98)
182 cd08398 C2_PI3K_class_I_alpha 93.1 1.7 3.7E-05 42.2 12.5 68 80-148 26-107 (158)
183 cd08693 C2_PI3K_class_I_beta_d 92.2 2.6 5.7E-05 41.6 12.8 69 80-148 27-121 (173)
184 PF15627 CEP76-C2: CEP76 C2 do 92.1 1.6 3.4E-05 42.2 10.5 101 82-183 36-153 (156)
185 COG3886 Predicted HKD family n 91.6 1.1 2.3E-05 44.2 9.0 120 560-750 38-160 (198)
186 COG0855 Ppk Polyphosphate kina 91.5 0.59 1.3E-05 54.0 8.1 94 607-754 386-486 (696)
187 KOG1452 Predicted Rho GTPase-a 90.1 0.88 1.9E-05 47.8 7.2 99 9-148 43-142 (442)
188 cd08380 C2_PI3K_like C2 domain 88.4 2.4 5.3E-05 40.9 8.8 69 80-148 28-108 (156)
189 PF15625 CC2D2AN-C2: CC2D2A N- 88.3 1.8 3.9E-05 42.6 7.8 85 64-148 21-107 (168)
190 cd08397 C2_PI3K_class_III C2 d 87.9 2.3 5E-05 41.4 8.1 70 78-147 28-107 (159)
191 cd04012 C2A_PI3K_class_II C2 d 86.0 5 0.00011 39.5 9.5 69 80-148 29-120 (171)
192 PF09565 RE_NgoFVII: NgoFVII r 85.7 6.9 0.00015 42.0 10.9 41 708-750 78-123 (296)
193 PF00792 PI3K_C2: Phosphoinosi 84.7 5.5 0.00012 37.8 8.9 68 81-148 3-86 (142)
194 cd08399 C2_PI3K_class_I_gamma 83.1 9.6 0.00021 37.8 9.9 50 81-130 31-88 (178)
195 PF11495 Regulator_TrmB: Archa 79.6 5.4 0.00012 41.3 7.2 51 559-629 8-58 (233)
196 PF06087 Tyr-DNA_phospho: Tyro 78.1 0.96 2.1E-05 51.7 1.2 41 707-748 345-402 (443)
197 KOG0694 Serine/threonine prote 76.2 1.3 2.8E-05 51.7 1.5 96 80-184 28-125 (694)
198 smart00142 PI3K_C2 Phosphoinos 70.6 27 0.00058 31.0 8.3 51 80-130 32-91 (100)
199 KOG3964 Phosphatidylglycerolph 69.1 7.3 0.00016 42.7 5.0 56 560-631 38-93 (469)
200 PF14429 DOCK-C2: C2 domain in 68.7 11 0.00023 37.6 5.9 55 92-146 59-120 (184)
201 PF11618 DUF3250: Protein of u 59.1 73 0.0016 28.8 8.8 93 83-179 2-104 (107)
202 PF06219 DUF1005: Protein of u 56.3 80 0.0017 35.2 10.0 75 120-198 95-182 (460)
203 cd08695 C2_Dock-B C2 domains f 55.4 18 0.00039 36.2 4.7 39 92-130 53-94 (189)
204 cd08694 C2_Dock-A C2 domains f 52.6 24 0.00051 35.5 4.9 40 92-131 53-95 (196)
205 cd05137 RasGAP_CLA2_BUD2 CLA2/ 45.7 25 0.00055 39.4 4.5 50 136-187 1-51 (395)
206 cd08697 C2_Dock-D C2 domains f 44.8 92 0.002 31.1 7.8 39 92-130 56-97 (185)
207 cd08696 C2_Dock-C C2 domains f 41.2 58 0.0013 32.3 5.7 39 92-130 54-95 (179)
208 PTZ00447 apical membrane antig 39.2 1.9E+02 0.0042 31.4 9.3 93 80-177 74-170 (508)
209 cd08679 C2_DOCK180_related C2 38.9 61 0.0013 32.0 5.6 51 94-145 55-114 (178)
210 PF09565 RE_NgoFVII: NgoFVII r 38.0 2.4E+02 0.0052 30.4 10.2 26 365-395 80-106 (296)
211 COG1489 SfsA DNA-binding prote 37.2 1.2E+02 0.0026 31.3 7.4 59 241-305 154-212 (235)
212 KOG1327 Copine [Signal transdu 36.6 38 0.00083 39.1 4.1 59 91-149 40-104 (529)
213 TIGR00230 sfsA sugar fermentat 34.8 1.1E+02 0.0024 31.8 6.8 72 212-305 142-213 (232)
214 COG1184 GCD2 Translation initi 26.5 1.3E+02 0.0027 32.5 5.7 47 284-343 129-175 (301)
215 COG1378 Predicted transcriptio 25.4 1E+02 0.0023 32.2 4.8 48 241-305 119-166 (247)
216 KOG1467 Translation initiation 22.6 1.4E+02 0.0031 34.0 5.3 47 285-344 370-416 (556)
217 KOG1466 Translation initiation 21.4 88 0.0019 32.7 3.2 76 247-343 109-186 (313)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=4.2e-126 Score=1078.53 Aligned_cols=767 Identities=73% Similarity=1.218 Sum_probs=667.2
Q ss_pred CCCceeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEE
Q 004061 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (776)
Q Consensus 7 ~~~~~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v 86 (776)
.-+.++.++||+|+++|++|++||+|++++++++++|..+..|..+........-..+..+.-++-...+..++||||+|
T Consensus 4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I 83 (868)
T PLN03008 4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV 83 (868)
T ss_pred ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence 44677899999999999999999999999998999998777666432211000000000000011122335679999999
Q ss_pred EECCeeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 87 ~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
.++++++.||++++++.||+|||+|.|.+.++...|+|+|||+|.+++++||.+.||++++..|+.++.|++|++..+++
T Consensus 84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 99888888999999999999999999999998888999999999999999999999999999999999999999999988
Q ss_pred CCCCceEEEEEEEEecCCCCccccccCCCCCCCCCCCccCCCCCCCeeEEeecccccCCCCCceecCCCCccCccchHHH
Q 004061 167 PKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWED 246 (776)
Q Consensus 167 ~~~~g~i~l~l~~~p~~~~~~f~~g~~~~~ef~~v~~t~~p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 246 (776)
.+..++|+++|+|.|....+.|..|++++++|.+|+.+.||...|++|++|.|+|++||+.|.|.|++|+.|.+..+|+.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed 243 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED 243 (868)
T ss_pred CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccC
Q 004061 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATH 326 (776)
Q Consensus 247 l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~ 326 (776)
++.||.+||++|||..|++.+.++|+|++.. +.++..+|.++|++||++||+|.||+||+..|+...+++..|+|.++
T Consensus 244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~th 321 (868)
T PLN03008 244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTH 321 (868)
T ss_pred HHHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccc
Confidence 9999999999999999999999999998752 22234899999999999999999999999999876778889999999
Q ss_pred cHHHHhhhcCCCceEEeccCCCCcccccchhc-----------cccceecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004061 327 DEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (776)
Q Consensus 327 ~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~-----------~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~ 395 (776)
++++.++|++.+|.|.++|+++....+++++. ...+.++||||++|||+++++.+++.+|||||+|+|.
T Consensus 322 deet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~ 401 (868)
T PLN03008 322 DEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCD 401 (868)
T ss_pred cHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccC
Confidence 99999999999999999998877666666552 2346799999999999987777899999999999999
Q ss_pred ccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcccchhhhhhhcccccc
Q 004061 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW 475 (776)
Q Consensus 396 ~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~ 475 (776)
+|||++.|++++++++.+++||+||++.++...++++|||+|++|+||+|.+|+.+|.++|+.+++.+++..+.+....|
T Consensus 402 gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~ 481 (868)
T PLN03008 402 GRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHW 481 (868)
T ss_pred CccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccccccc
Confidence 99999999999999999999999999876677788999999999999999999999999999998865443445556678
Q ss_pred cccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCC
Q 004061 476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555 (776)
Q Consensus 476 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~ 555 (776)
.++.|+.+.++.+++.|....++......+...+..++....++++|.+|++||++.|++.++|..++.+..++++|+++
T Consensus 482 ~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~ 561 (868)
T PLN03008 482 QDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKR 561 (868)
T ss_pred ccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccc
Confidence 88999999888887766432211111111211111222223567889999999999999999999998888999999999
Q ss_pred ccchhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCC
Q 004061 556 VVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDP 635 (776)
Q Consensus 556 ~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~ 635 (776)
...|.||+.+|+++|++|||+||||||||++....|+...+.++.|+|+++++++|+++++++++++|.||+|.+|+|++
T Consensus 562 ~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~ 641 (868)
T PLN03008 562 LVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDP 641 (868)
T ss_pred cchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCC
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeee
Q 004061 636 KTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (776)
Q Consensus 636 d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~ 715 (776)
..+.+|.+++|+.+|++++|..+.+.|.+.|...+|.+||+|||+++|+...+.....+|..+..+++.++..+|+|||+
T Consensus 642 ~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~ 721 (868)
T PLN03008 642 KSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKG 721 (868)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeE
Confidence 99999999999999999999999999999887778999999999999987644344445555556677777789999999
Q ss_pred EEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
|||||++++|||||||.|||.+++|+|+++.++++...|..+...++++|+.||++||+|
T Consensus 722 ~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaE 781 (868)
T PLN03008 722 MIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAE 781 (868)
T ss_pred EEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999888999999999999988777777899999999999998
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3.4e-113 Score=974.76 Aligned_cols=700 Identities=48% Similarity=0.844 Sum_probs=603.4
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccc-cCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACD-VCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (776)
.++||+|+|+|++|++|++++. ++.+++++.... .|+... .++|||++|.+++.
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~------------------------~~~~~y~tv~~~~a 58 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVGK------------------------GESQLYATIDLEKA 58 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCCC------------------------CCCCceEEEEeCCc
Confidence 4899999999999999998654 555555554221 122111 24899999999999
Q ss_pred eeeeeccccCC-CCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCCCC
Q 004061 92 TVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (776)
Q Consensus 92 ~~~~T~~~~~~-~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~ 170 (776)
+++||+++.+. .||.|+|+|.+++.++.+.++|+|+|.+.++..+||.+.||+.++..|+.+++|+++++..+++.+..
T Consensus 59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 99999999985 69999999999999999999999999999999999999999999999999999999999999998778
Q ss_pred ceEEEEEEEEecCCCCccccccCCCCCCCCCCCccCCCCCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHH
Q 004061 171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA 250 (776)
Q Consensus 171 g~i~l~l~~~p~~~~~~f~~g~~~~~ef~~v~~t~~p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 250 (776)
.+|+++++|+|....+.|..|+++ ++|.+|+.+.||...|++|++|.|+|+++++.|+|+|.+|+.|.+..+|+.+.++
T Consensus 139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A 217 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA 217 (808)
T ss_pred CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence 899999999999999999999976 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHH
Q 004061 251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET 330 (776)
Q Consensus 251 I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~ 330 (776)
|.+||++|+|.+|.|++.+.|+|++..+.+. ...+|.++|++||++||+|+||+||+..+... ++..|+|.++++.+
T Consensus 218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t 294 (808)
T PLN02270 218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEET 294 (808)
T ss_pred HHhhhcEEEEEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHH
Confidence 9999999999999999999999876433333 24699999999999999999999999887642 35568899899999
Q ss_pred HhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCC---CCcceEEEEccccCCCccCCCCCCCCcc
Q 004061 331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG---NNRKITAFIGGIDLCDGRYDTPEHRLFR 407 (776)
Q Consensus 331 ~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~---~~~~~~a~vGG~Ni~~~r~d~~~H~~~~ 407 (776)
.++|++.+|++.++++.+.....++.+...+..++||||++|||+++|+ ++++.+|||||+|+|++||||+.|++++
T Consensus 295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~ 374 (808)
T PLN02270 295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR 374 (808)
T ss_pred HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence 9999999999999988876555555444456678999999999997443 4688999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCC---CCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcccchhhhhhhcccccccccchhhcc
Q 004061 408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484 (776)
Q Consensus 408 ~~~~~~~~d~~n~~~~~---~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 484 (776)
++++.+++||++|+|.+ +.+.++++|||+|++|+||+|.+|+.+|.++|+.+++.. .+...+
T Consensus 375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~ 439 (808)
T PLN02270 375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLR 439 (808)
T ss_pred cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhc
Confidence 99999999999998753 567789999999999999999999999999999987652 111222
Q ss_pred ccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhHHH
Q 004061 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQT 564 (776)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~ 564 (776)
++.++..|+. |. . -+.+.++|.+|++||++.+.+.++|..++....+|++++++...+.+|+.
T Consensus 440 ~~~~~~~P~~----------~~----~---~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~ 502 (808)
T PLN02270 440 ELEDVIIPPS----------PV----M---FPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQD 502 (808)
T ss_pred ccccccCCCC----------cc----c---CCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHH
Confidence 2222211210 00 0 02445789999999999999999999998888889999888878899999
Q ss_pred HHHHHHHhccceEEEecccccccCCCCCcc----ccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcch
Q 004061 565 AYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (776)
Q Consensus 565 a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~----~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~ 640 (776)
+|+.+|++||++||||||||++.+.+|+.+ ++.++.|+|+++++++|+++++++++++|+||+|.+|+|.++..++
T Consensus 503 aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~v 582 (808)
T PLN02270 503 AYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSV 582 (808)
T ss_pred HHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchH
Confidence 999999999999999999999999988654 5678999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCC-----cccccCCCCcccccccCceeceEEeeee
Q 004061 641 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP-----KDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (776)
Q Consensus 641 ~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lHsK~ 715 (776)
|.+++|+.+|+.++|..+.+.|+++|+..+|.+||+|||+++|+... |...+..++.+..++..+++.+|+|||+
T Consensus 583 q~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~ 662 (808)
T PLN02270 583 QAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKM 662 (808)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeE
Confidence 99999999999999999999999999866899999999999998642 2222333444555566667789999999
Q ss_pred EEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
|||||++++|||+|+|.|||.|++|+||++..++|..... ....+++|+.||++||+|
T Consensus 663 ~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~--~~~~r~~i~~~R~~Lw~E 720 (808)
T PLN02270 663 MIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLST--RQPARGQIHGFRMSLWYE 720 (808)
T ss_pred EEEcCCEEEEeccccccccccCCccchhhhcccCcccccc--ccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888864432 235688999999999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.3e-107 Score=928.41 Aligned_cols=653 Identities=44% Similarity=0.777 Sum_probs=547.3
Q ss_pred eeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC
Q 004061 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (776)
Q Consensus 11 ~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (776)
+-.++||+|+++|++|+ + ++++|.....|+.- .|||++|.+++
T Consensus 4 ~~~~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~~ 46 (758)
T PLN02352 4 KQKFFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIGN 46 (758)
T ss_pred cccccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeCC
Confidence 44579999999999998 2 22333322222211 49999999999
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCCCCCceeEEEEccccccccCce-eEEEEEccCCCCCCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPPK 168 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~-~~~w~~l~~~~~~~~~ 168 (776)
.+++|| .+..||.|+|+|.+++.++. .+++|+|+| +..+||.+.||+.++..|+. +++|+++++..+++..
T Consensus 47 ~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~ 119 (758)
T PLN02352 47 KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP 119 (758)
T ss_pred cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC
Confidence 999999 56779999999999999998 679999988 57899999999999998866 9999999999998864
Q ss_pred CCceEEEEEEEEecCCCCccccccCCCCCCCCCCCccCCCCCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHH
Q 004061 169 PGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDIC 248 (776)
Q Consensus 169 ~~g~i~l~l~~~p~~~~~~f~~g~~~~~ef~~v~~t~~p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 248 (776)
..+|+++++|.|+...+.|..|+++ .+|.+|+.+.||...|++|++|.|+|.++++.|+|.| .|.+.++|++|+
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~ 193 (758)
T PLN02352 120 -ELKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVY 193 (758)
T ss_pred -CCEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHH
Confidence 3799999999999999999999977 5999999999999999999999999999999999988 455588999999
Q ss_pred HHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcH
Q 004061 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDE 328 (776)
Q Consensus 249 ~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~ 328 (776)
++|++||++|+|++|+|++++.|+|++..+.+.+.+.+|.++|++||++||+||||+||+.+|... ++..|+|.++++
T Consensus 194 eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~ 271 (758)
T PLN02352 194 KAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDE 271 (758)
T ss_pred HHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchH
Confidence 999999999999999999999999876432222234899999999999999999999999987653 455677888888
Q ss_pred HHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCC--CCcceEEEEccccCCCccCCCCCCCCc
Q 004061 329 ETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG--NNRKITAFIGGIDLCDGRYDTPEHRLF 406 (776)
Q Consensus 329 ~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~--~~~~~~a~vGG~Ni~~~r~d~~~H~~~ 406 (776)
...+++++.+|.|.+.++.... .+..++||||++|||.++++ ++++.+|||||+|+|.+||||+.|+++
T Consensus 272 ~~~~~f~h~~V~~~l~pr~~~~---------~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~ 342 (758)
T PLN02352 272 DAFAYFKHTKVVCKLCPRLHKK---------FPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLF 342 (758)
T ss_pred HHHhhccCCceEEeeccccccc---------cccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcc
Confidence 8899999999999887765431 24567899999999997443 457789999999999999999999999
Q ss_pred cCCCcc-ccCCCCCCCCC---CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcccchhhhhhhcccccccccchhh
Q 004061 407 RDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIK 482 (776)
Q Consensus 407 ~~~~~~-~~~d~~n~~~~---~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~ 482 (776)
|++++. +++||+|+.|. .+.+.+++||||+|++|+||+|.|+..+|.+||+++++.. .+++
T Consensus 343 d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~---------------~l~p 407 (758)
T PLN02352 343 RTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLVP 407 (758)
T ss_pred cccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc---------------ccCC
Confidence 999876 46899998876 2567789999999999999999999999999999987642 1111
Q ss_pred ccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhH
Q 004061 483 IGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSI 562 (776)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i 562 (776)
...+.++..+ |. ......++|.+|++||++.+++.+||.. ...+.+|
T Consensus 408 ~~~~~~~~~~------------p~-------~~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~~~erSI 454 (758)
T PLN02352 408 TSSIRNLVHQ------------PG-------SSESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERSI 454 (758)
T ss_pred cccccccccC------------CC-------CCcccCCcccceEEEecCccccccCCCC--------------CchhhHH
Confidence 1111111100 10 0012457899999999988877777742 2348999
Q ss_pred HHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhh
Q 004061 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQE 642 (776)
Q Consensus 563 ~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~ 642 (776)
+++|+++|++|||+||||||||++.++.|+++...++.|+|+++++++|+++++++++++|.||+|.+|+|.++..++|.
T Consensus 455 q~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~ 534 (758)
T PLN02352 455 HEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQD 534 (758)
T ss_pred HHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCc-----ccccCCCCcccccccCceeceEEeeeeEE
Q 004061 643 ILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPK-----DVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (776)
Q Consensus 643 ~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~lHsK~~I 717 (776)
+++|+++++.++|..+.+.|.++|...+|.+||+|||+++|+.... ...+...+.+..++..+++.+|||||+||
T Consensus 535 il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMI 614 (758)
T PLN02352 535 ILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMI 614 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCccccccCCCCCchhhhcccccceeEEEeeeEEE
Confidence 9999999999999999999999997678999999999999986521 11122222223334444557999999999
Q ss_pred EeeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 718 VDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
|||++++|||||+|+|||.|++|+||++.+++++.... ....++|+.||++||+|
T Consensus 615 VDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~---~~~~~~i~~~R~~L~~E 669 (758)
T PLN02352 615 VDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN---TNNPRDIQAYRMSLWYE 669 (758)
T ss_pred EcCcEEEEcccccccccccCcccchhhhcccccccCCC---cccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976532 23468999999999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=8.3e-96 Score=825.89 Aligned_cols=689 Identities=44% Similarity=0.714 Sum_probs=581.0
Q ss_pred CCCceeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEE
Q 004061 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (776)
Q Consensus 7 ~~~~~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v 86 (776)
+....+.+.||+|+++|..+..++++.....+.+..+.....|......-+-...+++++- ++.+++++..++++|+++
T Consensus 66 ~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~e~Ylt~ 144 (887)
T KOG1329|consen 66 SGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRS-SLNSSMEKRKTLENYLTV 144 (887)
T ss_pred CcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccC-Ccccchhhhhhccchhee
Confidence 4556688999999999999999998776665555555544444332221111112333332 222235555668999999
Q ss_pred EECCeeeeeeccccCC-CCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCC
Q 004061 87 VVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (776)
Q Consensus 87 ~~~~~~~~~T~~~~~~-~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (776)
.+......+|....+. .+|.|.+.|.+.+.+....+.+++.+.+..+ ...+|.+.+++..+..+..+.+|++++...+
T Consensus 145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence 9999888899999887 8899999999999998888999999999999 8999999999999998888999999988888
Q ss_pred CCCCCCceEEEEEEEEecCCCCccccccCCCCCCCCCCCccCCCCCCCeeEEeecccccCCCCCceecCCCC-ccCccch
Q 004061 165 SPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGTC 243 (776)
Q Consensus 165 ~~~~~~g~i~l~l~~~p~~~~~~f~~g~~~~~ef~~v~~t~~p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~-~~~~~~~ 243 (776)
++......+.+++.|.+......+..+..+++++.+++.+.++...|..|++|.|+|+.+++.|.+.+++|+ .|....+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~ 304 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY 304 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence 776556668888999999999999999999999999999999999999999999999999999999999999 7888899
Q ss_pred HHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCcc
Q 004061 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (776)
Q Consensus 244 ~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~ 323 (776)
|+.+.+||.+||+.|||+.|++.|.++|.|+.... ..-+|.++|+++|++||+|+||+||+.++... .
T Consensus 305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i 372 (887)
T KOG1329|consen 305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------I 372 (887)
T ss_pred HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------c
Confidence 99999999999999999999999999999987521 23799999999999999999999999987642 2
Q ss_pred ccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCC
Q 004061 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (776)
Q Consensus 324 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H 403 (776)
.++..+...++++.+|+|..+|+.+.+.. .+.|.||+|++|||.+ ++||||+++|+|||||++|
T Consensus 373 ~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH 436 (887)
T KOG1329|consen 373 NSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEH 436 (887)
T ss_pred CchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccc
Confidence 24556778888999999999998765321 2478899999999999 9999999999999999999
Q ss_pred CCccCCCccccCCCCCCCCC-----CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcccchhhhhhhccccccccc
Q 004061 404 RLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (776)
Q Consensus 404 ~~~~~~~~~~~~d~~n~~~~-----~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (776)
+|+|+++.++++||+||++. ++.+.||+||||+||++.||+|+|+.++|+||||++...+. + + ++
T Consensus 437 ~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-------~--~-~~ 506 (887)
T KOG1329|consen 437 PLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-------P--Y-DD 506 (887)
T ss_pred cccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-------C--C-Cc
Confidence 99999999999999999987 68889999999999999999999999999999999876421 0 0 11
Q ss_pred chhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccc
Q 004061 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (776)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~ 558 (776)
.+..+...+++..|+ .| .+.+++.+.+|+++|++.|.+.+ +.....+|+++++....
T Consensus 507 ~~p~L~p~~~~~~~~----------~~---------~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~ 563 (887)
T KOG1329|consen 507 SLPLLLPISDITGPS----------EP---------NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEI 563 (887)
T ss_pred cceeecChhhhcCCC----------Cc---------cccccccccccceeeccCCcccc----hHHhhhhcccccCCCch
Confidence 111111111111111 11 14456788999999998887644 45667889999999989
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCC--CC--C
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG--D 634 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~--~g--~ 634 (776)
|+||++||+++|++||||||||||||++.+..|.. ..|.++.+++++|++|.++++.++|+||+|.|| +| .
T Consensus 564 e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~ 638 (887)
T KOG1329|consen 564 EDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDT 638 (887)
T ss_pred HHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCC
Confidence 99999999999999999999999999998877654 367788999999999999999999999999999 78 7
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCC-CCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEee
Q 004061 635 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD-AHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHA 713 (776)
Q Consensus 635 ~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~-i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHs 713 (776)
+...++|++++|+++|++++|..++++|++.|++ .+|.+|+.|+|++++++. +++..++.+||||
T Consensus 639 p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~--------------~~~~~~emIYVHs 704 (887)
T KOG1329|consen 639 PGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQ--------------AQRLRREMIYVHS 704 (887)
T ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccc--------------cccceEEEEEEee
Confidence 7788999999999999999999999999999987 567788888888887530 2355678999999
Q ss_pred eeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhccC
Q 004061 714 KGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHAR 776 (776)
Q Consensus 714 K~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~~ 776 (776)
|+|||||++++|||||+|+|||.||+|+||+++++|++..+..++..+.++|+.||++||+|.
T Consensus 705 K~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EH 767 (887)
T KOG1329|consen 705 KLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREH 767 (887)
T ss_pred eeEEecCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999898888999999999999983
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=1.4e-69 Score=626.66 Aligned_cols=485 Identities=31% Similarity=0.475 Sum_probs=352.3
Q ss_pred ccCCCC----CCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCC
Q 004061 204 AYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPL 279 (776)
Q Consensus 204 t~~p~~----~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~ 279 (776)
+..|+. .||.+++|+|| +++|.+|+++|++||++|+|++|+|+|.++|+|++. +
T Consensus 322 SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~--D 379 (1068)
T PLN02866 322 SFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH--D 379 (1068)
T ss_pred CcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--C
Confidence 344555 68999999998 889999999999999999999999999999987431 1
Q ss_pred CCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhh--cCCCceEEeccCCCCcccccchh
Q 004061 280 PRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFKQ 357 (776)
Q Consensus 280 ~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~v~~~~~~~~~~~~~~~~ 357 (776)
. .+.+|.++|++||++||+||||+||.++..... . .....+.| .++||+|..+|....
T Consensus 380 ~--~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--------S~~~k~~L~~lh~gI~V~r~P~~~~-------- 439 (1068)
T PLN02866 380 H--ESSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--------SVYSKRRLLGIHENVKVLRYPDHFS-------- 439 (1068)
T ss_pred c--hHHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--------chhhHHHHHHhCCCeEEEecCcccc--------
Confidence 1 248999999999999999999999998642210 0 01111222 357999865432110
Q ss_pred ccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCcccc-CCCCCCCCC-------------
Q 004061 358 QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFK-DDFHNPTYP------------- 423 (776)
Q Consensus 358 ~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~-~d~~n~~~~------------- 423 (776)
...+++|||||++|||++ +||+||+|||.+|||+.+|.+.|.....|+ +||.|++..
T Consensus 440 -~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~l 510 (1068)
T PLN02866 440 -SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDEL 510 (1068)
T ss_pred -cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccccc
Confidence 124688999999999999 999999999999999999999886666664 589888643
Q ss_pred CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcccchhhhhhhccc---------ccccc-----------------
Q 004061 424 IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRV---------SHWRD----------------- 477 (776)
Q Consensus 424 ~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~---------~~~~~----------------- 477 (776)
++...+++||||++++|+||+|.+|+++|.++|+.+++.+.-....... +.+..
T Consensus 511 dR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 590 (1068)
T PLN02866 511 DRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQK 590 (1068)
T ss_pred ccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccccccccccccccc
Confidence 2455677899999999999999999999999999987653100000000 00000
Q ss_pred -----cch---hhccccccccCccccc----------------------------cCCCccccCCC---C--cc------
Q 004061 478 -----DYL---IKIGRISWILSPELSL----------------------------KTNGTTIVPRD---D--NV------ 510 (776)
Q Consensus 478 -----~~l---~~~~~~~~~~~~~~~~----------------------------~~~~~~~~p~~---~--~~------ 510 (776)
+.. ...+.++.+++++... .++..+..|-. + ..
T Consensus 591 ~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 670 (1068)
T PLN02866 591 GIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVK 670 (1068)
T ss_pred cccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000011111110000 00000000000 0 00
Q ss_pred --------------------------c--ccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhH
Q 004061 511 --------------------------V--RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSI 562 (776)
Q Consensus 511 --------------------------~--~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i 562 (776)
. ........+++.+||+||...|+. | ....|.+|
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~-------------G-----~~~~E~SI 732 (1068)
T PLN02866 671 MSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSA-------------G-----TSQVEESI 732 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccC-------------C-----CCchHHHH
Confidence 0 000011235688999999765532 1 11248999
Q ss_pred HHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCC--CCC---CC
Q 004061 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP---KT 637 (776)
Q Consensus 563 ~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~--g~~---d~ 637 (776)
++||+++|++|+|+||||||||++.... +....|+|+.+++.+|++|+++++.++|+||+|.+|+ |.. ..
T Consensus 733 ~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~ 807 (1068)
T PLN02866 733 HAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGA 807 (1068)
T ss_pred HHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccc
Confidence 9999999999999999999999986432 2356899999999999999999999999999999996 332 33
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEE
Q 004061 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (776)
Q Consensus 638 ~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~I 717 (776)
..++.+++|+++++++++.++.+.|.+++. +.|.+||+||++++++.. ..|.+ +..+++|||||+||
T Consensus 808 ~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g-~~p~dYisf~~LRn~~~l------~~~~~------~vteqIYVHsK~~I 874 (1068)
T PLN02866 808 ASVRAIMHWQYRTICRGKNSILHNLYDLLG-PKTHDYISFYGLRAYGRL------FEGGP------LATSQIYVHSKIMI 874 (1068)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhC-CCHHHeEeeecccccccc------cCCCc------ccceeeEEEeeEEE
Confidence 578999999999999999999999998532 368899999999987542 11222 22357999999999
Q ss_pred EeeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhccc---CCCCchhHHHHHhhhcc
Q 004061 718 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL---KHPHGQEVTLVRASWHA 775 (776)
Q Consensus 718 VDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~---~~~~~~i~~~r~~lw~~ 775 (776)
|||++++|||||+|.|||.|++|+|+++.+.|++.....++ ..++++++.||++||+|
T Consensus 875 vDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~E 935 (1068)
T PLN02866 875 VDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSE 935 (1068)
T ss_pred EcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999987665444 34678999999999987
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=3.9e-52 Score=473.62 Aligned_cols=337 Identities=24% Similarity=0.345 Sum_probs=254.2
Q ss_pred CccCCCCCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCC
Q 004061 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (776)
Q Consensus 203 ~t~~p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g 282 (776)
.+.+|.+.||.+++|.|| +++|++++++|++||++|+|++|+|.+| ..|
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~d-----------~~g 179 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKSD-----------EIG 179 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeCC-----------cHH
Confidence 356889999999999998 8999999999999999999999999886 233
Q ss_pred CCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccc
Q 004061 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (776)
Q Consensus 283 ~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~ 362 (776)
..|.++|.+||+|||+||||+ |+.||... .+...+.|+++||++..+.+.... ++ ..+.
T Consensus 180 --~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~~---~~---~~~~ 238 (509)
T PRK12452 180 --TKVRDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFSA---WL---LETV 238 (509)
T ss_pred --HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCcccc---cc---cccc
Confidence 899999999999999999996 99998642 246778899999999865433211 11 2357
Q ss_pred eecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC
Q 004061 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 442 (776)
Q Consensus 363 ~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~G 442 (776)
|+|||||++||||+ +||+||+|+++ +|.+.. ....+|||+|++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEEC
Confidence 89999999999999 99999999999 453211 124689999999999
Q ss_pred hHHHHHHHHHHHHhhhcccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCe
Q 004061 443 PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 522 (776)
Q Consensus 443 pav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 522 (776)
|+|.+++..|.++|+.+++... ...|.. . ..+ .+.|.. ....+..
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~-------~~~~~~--------~---~~~---------~~~~~~--------~~~~~~~ 329 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN-------TYSWDP--------F---MNR---------QYFPGK--------EISNAEG 329 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc-------cccccc--------c---cch---------hcCCCc--------cccCCCe
Confidence 9999999999999998754310 000000 0 000 011110 0012344
Q ss_pred EEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCc
Q 004061 523 HVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNL 602 (776)
Q Consensus 523 ~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~ 602 (776)
.+|++.+ | |... +.++.++++++|++||++|||+||||++ +.
T Consensus 330 ~~q~~~s---g-----p~~~----------------~~~i~~~~l~~I~~A~~~I~I~tpYf~p------d~-------- 371 (509)
T PRK12452 330 AVQIVAS---G-----PSSD----------------DKSIRNTLLAVMGSAKKSIWIATPYFIP------DQ-------- 371 (509)
T ss_pred EEEEEeC---C-----CCch----------------hHHHHHHHHHHHHHhhhEEEEECCccCC------CH--------
Confidence 6888875 3 3221 4689999999999999999999999994 33
Q ss_pred cHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCC
Q 004061 603 IPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGK 682 (776)
Q Consensus 603 ~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~ 682 (776)
.+..+++.|++ |||+|+||+|. .+|.. +++++.+++ ++.|+++|++| |.+
T Consensus 372 -~l~~aL~~Aa~----rGV~Vrii~p~----~~D~~----~~~~a~~~~-------~~~L~~aGv~I--------~~y-- 421 (509)
T PRK12452 372 -ETLTLLRLSAI----SGIDVRILYPG----KSDSI----ISDQASQSY-------FTPLLKAGASI--------YSY-- 421 (509)
T ss_pred -HHHHHHHHHHH----cCCEEEEEcCC----CCChH----HHHHHHHHH-------HHHHHHcCCEE--------EEe--
Confidence 34444444443 66999999995 34433 445555543 78899999976 332
Q ss_pred ccCCCcccccCCCCcccccccCceeceEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcch
Q 004061 683 REEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (776)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~ 754 (776)
. ++++|+|++||||++++|||+|||.||+. .|.|++++++|++++.
T Consensus 422 ----------------------~--~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~~ 467 (509)
T PRK12452 422 ----------------------K--DGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETVH 467 (509)
T ss_pred ----------------------c--CCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHHH
Confidence 1 46999999999999999999999999999 4599999999998764
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=6.4e-51 Score=463.36 Aligned_cols=334 Identities=25% Similarity=0.364 Sum_probs=252.3
Q ss_pred CccCCCCCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCC
Q 004061 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (776)
Q Consensus 203 ~t~~p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g 282 (776)
.+.+|.+.||.+++|.+| +++|++|+++|++||++|+|++|+|.+| ..|
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~d-----------~~g 155 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRPD-----------GLG 155 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEccC-----------CcH
Confidence 456889999999999998 8999999999999999999999999775 233
Q ss_pred CCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccc
Q 004061 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (776)
Q Consensus 283 ~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~ 362 (776)
.+|.++|.+||+|||+||||+ |+.||.... .+...+.|+++||++..+.+... ..++ ..+.
T Consensus 156 --~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~--~~~~---~~~~ 216 (483)
T PRK01642 156 --DQVAEALIAAAKRGVRVRLLY-DSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNL--GRVF---RRRL 216 (483)
T ss_pred --HHHHHHHHHHHHCCCEEEEEE-ECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCc--cccc---cccc
Confidence 899999999999999999995 999986521 23367789999999987632211 1111 2356
Q ss_pred eecccceEEEEccCCCCCCcceEEEEccccCCC-ccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEe
Q 004061 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD-GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (776)
Q Consensus 363 ~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~-~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~ 441 (776)
|+|||+|++||||+ +||+||+|+++ +++.. .....+|+|++++++
T Consensus 217 n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~--------------------------~~~~~~w~D~~~~i~ 262 (483)
T PRK01642 217 DLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ--------------------------DPGVGQWRDTHVRIE 262 (483)
T ss_pred ccccCceEEEEcCC--------EEEeCCcccCCHHHhCC--------------------------CCCCCCcEEEEEEEE
Confidence 89999999999999 99999999999 54421 112368999999999
Q ss_pred ChHHHHHHHHHHHHhhhcccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCC
Q 004061 442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN 521 (776)
Q Consensus 442 Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 521 (776)
||+|.+++..|.++|+.+++... ... .|.. ..++ ....+.
T Consensus 263 Gp~v~~l~~~F~~dW~~~~~~~~---------------~~~--------~~~~--------~~~~---------~~~~~~ 302 (483)
T PRK01642 263 GPVVTALQLIFAEDWEWETGERI---------------LPP--------PPDV--------LIMP---------FEEASG 302 (483)
T ss_pred cHHHHHHHHHHHHHHHHHhCccc---------------CCC--------Cccc--------ccCC---------ccCCCC
Confidence 99999999999999998654310 000 0000 0000 011223
Q ss_pred eEEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCC
Q 004061 522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN 601 (776)
Q Consensus 522 ~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n 601 (776)
..+|++.+ | |..+ +..++++++++|.+||++|||++|||++ +.
T Consensus 303 ~~~qi~~s---g-----P~~~----------------~~~~~~~~~~~I~~A~~~I~I~tpYfip------~~------- 345 (483)
T PRK01642 303 HTVQVIAS---G-----PGDP----------------EETIHQFLLTAIYSARERLWITTPYFVP------DE------- 345 (483)
T ss_pred ceEEEEeC---C-----CCCh----------------hhHHHHHHHHHHHHhccEEEEEcCCcCC------CH-------
Confidence 46788865 3 3321 4578999999999999999999999994 33
Q ss_pred ccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecC
Q 004061 602 LIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLG 681 (776)
Q Consensus 602 ~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~ 681 (776)
.+..+++.|++ |||+|+||+|.. +|. .+++++++++ ++.|.++|++| |.+
T Consensus 346 --~i~~aL~~Aa~----rGV~Vril~p~~----~d~----~~~~~~~~~~-------~~~L~~~Gv~I--------~~y- 395 (483)
T PRK01642 346 --DLLAALKTAAL----RGVDVRIIIPSK----NDS----LLVFWASRAF-------FTELLEAGVKI--------YRY- 395 (483)
T ss_pred --HHHHHHHHHHH----cCCEEEEEeCCC----CCc----HHHHHHHHHH-------HHHHHHcCCEE--------EEe-
Confidence 34445544444 669999999963 343 3455666653 67888999876 432
Q ss_pred CccCCCcccccCCCCcccccccCceeceEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcch
Q 004061 682 KREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~ 754 (776)
. ++++|+|+|||||++++|||+|||.|||. .|+|++++++|++++-
T Consensus 396 -----------------------~--~~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~~ 441 (483)
T PRK01642 396 -----------------------E--GGLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFAA 441 (483)
T ss_pred -----------------------C--CCceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHHH
Confidence 1 46899999999999999999999999999 4599999999998764
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=1.7e-49 Score=439.55 Aligned_cols=327 Identities=20% Similarity=0.295 Sum_probs=243.7
Q ss_pred CCCCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCc
Q 004061 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (776)
Q Consensus 207 p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~ 286 (776)
+++.||.|++|.|| +++|.+++++|++||++|+|++|+|.+| ..| ..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d-----------~~g--~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFED-----------KVG--KQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecC-----------chH--HH
Confidence 67889999999998 8999999999999999999999999876 223 79
Q ss_pred HHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecc
Q 004061 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366 (776)
Q Consensus 287 l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~ 366 (776)
|.++|++||+|||+||||+ |+.||... .....+.|.++||+++.+.+.+. ++.. ...++.|+
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~----~~~~-~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR----LLGM-RTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc----cccc-ccccccCC
Confidence 9999999999999999996 99987642 24677889999999987643321 1100 11223599
Q ss_pred cceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHH
Q 004061 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (776)
Q Consensus 367 H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~ 446 (776)
|+|++|||++ +||+||+|++++++.. .+...|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHHH
Confidence 9999999999 9999999999844421 1124699999999999999
Q ss_pred HHHHHHHHHhhhcccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEE
Q 004061 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (776)
Q Consensus 447 ~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv 526 (776)
+++..|.+.|....... ..|... + ..+. ....+...+|+
T Consensus 157 ~l~~~f~~~w~~~~~~~---------~~~~~~-------------~----------~~~~---------~~~~g~~~~~~ 195 (411)
T PRK11263 157 DIHQFELEALPGQSAAR---------RWWRRH-------------H----------RAEE---------NRQPGEAQALL 195 (411)
T ss_pred HHHHHHHHHHhhcccch---------hhhccc-------------c----------cCcc---------cCCCCCeEEEE
Confidence 99999999997532110 000000 0 0000 01123445676
Q ss_pred EeeccCCCCCCCCCChhhhhcccccccCCccchhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHH
Q 004061 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (776)
Q Consensus 527 ~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~ 606 (776)
+.+ + |.. ....|...|+.+|.+|+++|+|+||||+| +. .+.
T Consensus 196 v~~---~-----p~~----------------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p------~~---------~l~ 236 (411)
T PRK11263 196 VWR---D-----NEE----------------HRDDIERHYLKALRQARREVIIANAYFFP------GY---------RLL 236 (411)
T ss_pred EEC---C-----Ccc----------------hHHHHHHHHHHHHHHhceEEEEEecCcCC------CH---------HHH
Confidence 643 2 221 13578999999999999999999999995 32 344
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCC
Q 004061 607 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 686 (776)
Q Consensus 607 ~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~ 686 (776)
.+++.|++ |||+|+||+|. .+|.+ ++.++++. +++.|+++|++| |++
T Consensus 237 ~aL~~Aa~----RGV~V~ii~~~----~~d~~----~~~~a~~~-------~~~~Ll~~Gv~I--------~~y------ 283 (411)
T PRK11263 237 RALRNAAR----RGVRVRLILQG----EPDMP----IVRVGARL-------LYNYLLKGGVQI--------YEY------ 283 (411)
T ss_pred HHHHHHHH----CCCEEEEEeCC----CCCcH----HHHHHHHH-------HHHHHHHCCCEE--------EEe------
Confidence 44444444 66999999995 44443 44555554 378899999976 433
Q ss_pred CcccccCCCCcccccccCceeceEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcch
Q 004061 687 PKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (776)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~ 754 (776)
. +.++|+|+|||||++++|||+|||.|||. +|.|++++|+|++++-
T Consensus 284 ------------------~--~~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a~ 329 (411)
T PRK11263 284 ------------------C--RRPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFNQ 329 (411)
T ss_pred ------------------c--CCCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHHH
Confidence 1 35899999999999999999999999998 4599999999998864
No 9
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=3.1e-40 Score=367.24 Aligned_cols=346 Identities=16% Similarity=0.213 Sum_probs=228.5
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
..+|+.+.++|.+||++|+|++|+|.++-.. .+ ..| .+|.++|++||+|||+||||+ |..+..
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~---~~---~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~~-------- 87 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLSDEV---GT---NFG--TMILNEIIQLPKRGVRVRIAV-NKSNKP-------- 87 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecCccc---cc---hhH--HHHHHHHHHHHHCCCEEEEEE-CCCCCc--------
Confidence 4579999999999999999999999853110 00 113 789999999999999999997 865321
Q ss_pred CccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCC
Q 004061 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (776)
....+.|+++||+++.++... ..+.++|+|++|||++ ++|+||+|+++ |+.+
T Consensus 88 -------~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 88 -------LKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred -------hhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 134567889999998654221 1235799999999999 99999999988 5532
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE--eChHHHHHHHHHHHHhhhcccchhhhhhhccccccccc
Q 004061 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (776)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i--~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (776)
..+|+++++ +||+|.+|++.|..+|+.++... +..|...
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~--------~~~~~~~ 180 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL--------PYNWKNF 180 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC--------CCccccc
Confidence 234777777 69999999999999999765321 0011110
Q ss_pred chhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccc
Q 004061 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (776)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~ 558 (776)
. |. .++...+.. ....+....+++.+ + |.... +. .
T Consensus 181 ~------------~~---------~~~~~~p~~----~~~~~~~~~~~~ss---s-----P~~~~---------~~---~ 215 (424)
T PHA02820 181 Y------------PL---------YYNTDHPLS----LNVSGVPHSVFIAS---A-----PQQLC---------TM---E 215 (424)
T ss_pred c------------cc---------ccccCCCcc----cccCCccceEEEeC---C-----Chhhc---------CC---C
Confidence 0 00 001000000 00011111234332 2 21000 00 0
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccC-------CCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCC
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSS-------YAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~-------~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~ 631 (776)
.....++++.+|.+||++|||++|||+|.. .+|| .+..|++.| |+ .|||+||||+|.|+
T Consensus 216 r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-----------~i~~AL~~A-A~--~RGV~VriLvp~~~ 281 (424)
T PHA02820 216 RTNDLTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWP-----------YIEDELRRA-AI--DRKVSVKLLISCWQ 281 (424)
T ss_pred CCchHHHHHHHHHHHhhEEEEEEccccceeeccCCcccchH-----------HHHHHHHHH-HH--hCCCEEEEEEeccC
Confidence 124578999999999999999999999761 2344 344444422 22 36699999999754
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEE
Q 004061 632 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYV 711 (776)
Q Consensus 632 ~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 711 (776)
+++.+ .++.+. .++.|.++|++| ++++|.+..+.. .....+++
T Consensus 282 ----d~~~~----~~a~~~-------~l~~L~~~gv~I----~Vk~y~~p~~~~------------------~~~~~~f~ 324 (424)
T PHA02820 282 ----RSSFI----MRNFLR-------SIAMLKSKNINI----EVKLFIVPDADP------------------PIPYSRVN 324 (424)
T ss_pred ----CCCcc----HHHHHH-------HHHHHhccCceE----EEEEEEcCcccc------------------cCCcceee
Confidence 44322 233332 257788889988 777886632111 01124799
Q ss_pred eeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 712 HAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 712 HsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
|+|+||||+ +++|||+|||.|||..| .|+++.++++.- .....++.+++.+.|..
T Consensus 325 HaK~~vvD~-~a~IGTsN~D~rsf~~n--~ev~~~i~~~~~------~~~~~~l~~~F~~D~~s 379 (424)
T PHA02820 325 HAKYMVTDK-TAYIGTSNWTGNYFTDT--CGVSINITPDDG------LGLRQQLEDIFIRDWNS 379 (424)
T ss_pred eeeEEEEcc-cEEEECCcCCHHHHhcc--CcEEEEEecCCc------HHHHHHHHHHHHHhcCC
Confidence 999999997 79999999999999955 999999998730 01123778888888864
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=1.1e-38 Score=355.51 Aligned_cols=358 Identities=16% Similarity=0.145 Sum_probs=224.1
Q ss_pred CCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHH
Q 004061 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (776)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~ 288 (776)
..++.+++|.+| +++|++|+++|++|+++|+|++|+|..| +.| ..|+
T Consensus 22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-----------~~g--~~il 68 (451)
T PRK09428 22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLEDD-----------EAG--REIL 68 (451)
T ss_pred cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecCC-----------chH--HHHH
Confidence 467899999998 8899999999999999999999999886 334 8999
Q ss_pred HHHHHHHh--cCCEEEEEEecCC-------CccCccccccCCccccCcHHHHhhhcCC--CceEEeccCCCCcccccchh
Q 004061 289 ELLKYKSE--EGVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQ 357 (776)
Q Consensus 289 ~~L~~aa~--rGV~VriLv~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~--gv~v~~~~~~~~~~~~~~~~ 357 (776)
++|.+|++ +||+|+||+ |.. |+... ..+..+...|+++ |+++.++.. |..
T Consensus 69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~~----------~~~~~~~~~l~~~~~gv~v~~f~~-p~~------- 129 (451)
T PRK09428 69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAAS----------NTNADWYCEMAQEYPGVDIPVYGV-PVN------- 129 (451)
T ss_pred HHHHHHHhcCCCcEEEEEE-EcccccccccccCCC----------CcCHHHHHHHHHhCCCceEEEcCC-ccc-------
Confidence 99999865 799999997 985 33210 0124566667654 699887632 111
Q ss_pred ccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeee
Q 004061 358 QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLH 437 (776)
Q Consensus 358 ~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~ 437 (776)
....+.++|+|++|||++ ++|+| +|+++.|+ +. + . ....|..
T Consensus 130 -~~e~~gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl-~~-~------------------------~--~~r~Dry 171 (451)
T PRK09428 130 -TREALGVLHLKGFIIDDT--------VLYSG-ASLNNVYL-HQ-H------------------------D--KYRYDRY 171 (451)
T ss_pred -cchhhhhceeeEEEECCC--------EEEec-ccccHHHh-cC-C------------------------c--ccCcceE
Confidence 113467899999999999 99987 89999443 21 0 0 1112778
Q ss_pred eEEeChHHHHHHHHHHHHhhhcccchhhhhhhccccccccc--chh-hccccccccCccccccCCCccccCCCCcccccc
Q 004061 438 CRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD--YLI-KIGRISWILSPELSLKTNGTTIVPRDDNVVRVS 514 (776)
Q Consensus 438 v~i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~--~l~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 514 (776)
++|+||+++++...|.++|..++..- . .... .|... ... ..+.+...+.. ..+.+.
T Consensus 172 ~~i~g~~la~~~~~fi~~~~~~~~~v--~-~l~~--~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~-------- 230 (451)
T PRK09428 172 HLIRNAELADSMVNFIQQNLLNSPAV--N-RLDQ--PNRPKTKEIKNDIRQFRQRLRD--------AAYQFQ-------- 230 (451)
T ss_pred EEEeCchHHHHHHHHHHHHhhccCcc--c-cccc--cccccchhhHHHHHHHHHHHhh--------hccCcc--------
Confidence 88999999999999999997754320 0 0000 00000 000 00000000000 000000
Q ss_pred cCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhHHHHHHHHHHhccceEEEecccccccCCCCCcc
Q 004061 515 KEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSY 594 (776)
Q Consensus 515 ~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~ 594 (776)
...+...+++....+.| | ...+...+..+|.+|+++|+|+||||+|+ .
T Consensus 231 --~~~~~~~~~v~p~~g~g-----~-------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~------~ 278 (451)
T PRK09428 231 --GQANNDELSVTPLVGLG-----K-------------------KNLLNKTIFHLMASAEQKLTICTPYFNLP------A 278 (451)
T ss_pred --cccCCCCeEEeeeeccC-----C-------------------chHHHHHHHHHHhccCcEEEEEeCCcCCC------H
Confidence 00011122333221111 1 14677899999999999999999999963 2
Q ss_pred ccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHH-------HHHHHhccC
Q 004061 595 KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVV-------AQELREMQV 667 (776)
Q Consensus 595 ~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l-------~~~L~~~Gv 667 (776)
.+...+..+++ +||+|+||+|.....+--.+..+.++.++...+ .|..+ .+.|.++|
T Consensus 279 -----------~l~~~L~~a~~--rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G- 342 (451)
T PRK09428 279 -----------ILVRNIIRLLR--RGKKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNG- 342 (451)
T ss_pred -----------HHHHHHHHHHh--cCCcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcC-
Confidence 23344445544 559999999964221111112223444544332 12111 12344555
Q ss_pred CCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeee
Q 004061 668 DAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGS 747 (776)
Q Consensus 668 ~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i 747 (776)
.+ .+++|.+ .+.++|+|.|+||++|++|||+|||.||+. +|.|++++|
T Consensus 343 ~l----~v~i~~~--------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i 390 (451)
T PRK09428 343 QL----NVRLWKD--------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLI 390 (451)
T ss_pred cc----eEEEEec--------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEE
Confidence 00 1223432 245899999999999999999999999999 669999999
Q ss_pred eCCCcchhcc
Q 004061 748 YQPHHTWARK 757 (776)
Q Consensus 748 ~d~~~~~~~~ 757 (776)
+||+-.+..+
T Consensus 391 ~d~~~~l~~~ 400 (451)
T PRK09428 391 HDPKQELAEQ 400 (451)
T ss_pred ECChHHHHHH
Confidence 9997555433
No 11
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=5.3e-37 Score=348.35 Aligned_cols=338 Identities=25% Similarity=0.352 Sum_probs=238.3
Q ss_pred CCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHH
Q 004061 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (776)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~ 288 (776)
..++.++++.+| .+.|.+++++|++|+++|++++|++.++ ..| ..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~d-----------~~~--~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQDD-----------ELG--REIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeCC-----------hhH--HHHH
Confidence 578899999998 8899999999999999999999999876 223 8999
Q ss_pred HHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCc-eEEeccCCCCcccccchhccccceeccc
Q 004061 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVLAPRYASSKLSYFKQQIVGTIFTHH 367 (776)
Q Consensus 289 ~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~v~~~~~~~~~~~~~~~~~~~~~~~r~H 367 (776)
++|.++|++||+||+|+ |+.|+... ........++++++ .+..+.+..... . .....+.|+|
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~--~---~~~~~~~r~H 166 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP--L---RFRRLNRRLH 166 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc--c---hhhhhhcccc
Confidence 99999999999999997 99987331 12457788889999 665443321110 0 1234678999
Q ss_pred ceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHH
Q 004061 368 QKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYD 447 (776)
Q Consensus 368 ~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~ 447 (776)
+|++|||++ ++|+||+|++++++... ....+|+|++++++||+|.+
T Consensus 167 ~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~~ 212 (438)
T COG1502 167 RKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVAD 212 (438)
T ss_pred ceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHHH
Confidence 999999998 99999999999665321 02358999999999999999
Q ss_pred HHHHHHHHhhhcccchhhhhhhcccccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEE
Q 004061 448 VLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIF 527 (776)
Q Consensus 448 l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~ 527 (776)
+...|.++|+....... .+. .. ..+. .+. ... ........+|++
T Consensus 213 l~~~f~~~w~~~~~~~~--------------~~~---~~---~~~~----------~~~----~~~--~~~~~~~~~~~~ 256 (438)
T COG1502 213 LARLFIQDWNLESGSSK--------------PLL---AL---VRPP----------LQS----LSL--LPVGRGSTVQVL 256 (438)
T ss_pred HHHHHHHHhhhccCcCc--------------ccc---cc---cccc----------ccc----ccc--cccccCcceEEE
Confidence 99999999998743210 000 00 0000 000 000 000111225666
Q ss_pred eeccCCCCCCCCCChhhhhcccccccCCccchhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHH
Q 004061 528 RSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMEL 607 (776)
Q Consensus 528 rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~ 607 (776)
.+ + |..... . ....+...++.+|.+|+++|+|++|||++. . .+.
T Consensus 257 ~~---~-----P~~~~~---------~---~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~------~---------~~~- 300 (438)
T COG1502 257 SS---G-----PDKGLG---------S---ELIELNRLLLKAINSARESILIATPYFVPD------R---------ELL- 300 (438)
T ss_pred ec---C-----Cccccc---------h---hhhhHHHHHHHHHHhhceEEEEEcCCcCCC------H---------HHH-
Confidence 65 3 221100 0 011245899999999999999999999953 2 233
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCC
Q 004061 608 ALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP 687 (776)
Q Consensus 608 a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~ 687 (776)
.++..+.+ +||+|+|++|.. +.++. .+++++.+. .+..|.+.|+++ |++
T Consensus 301 -~al~~a~~--~Gv~V~ii~~~~--~~~d~----~~~~~~~~~-------~~~~l~~~gv~i--------~~~------- 349 (438)
T COG1502 301 -AALKAAAR--RGVDVRIIIPSL--GANDS----AIVHAAYRA-------YLKELLEAGVKV--------YEY------- 349 (438)
T ss_pred -HHHHHHHh--cCCEEEEEeCCC--CCCCh----HHHHHHHHH-------HHHHHHHhCCEE--------EEe-------
Confidence 34444433 569999999953 12333 233444443 377888889875 433
Q ss_pred cccccCCCCcccccccCceec-eEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcch
Q 004061 688 KDVLANNGDKVSDSQKNQRFM-IYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~-~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~ 754 (776)
. . .++|+|+|||||++++|||+|||.||+.+| +|++++|+|++++.
T Consensus 350 -----------------~--~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN--~E~~~~i~d~~~~~ 396 (438)
T COG1502 350 -----------------P--GGAFLHSKVMIIDDRTVLVGSANLDPRSLRLN--FEVGLVIEDPELAL 396 (438)
T ss_pred -----------------c--CCCcceeeEEEEcCCEEEEeCCcCCHhHHHHh--hhheeEEeCHHHHH
Confidence 1 2 399999999999999999999999999954 99999999997764
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=3.5e-37 Score=339.04 Aligned_cols=331 Identities=16% Similarity=0.202 Sum_probs=214.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEe--ecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccc
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWS--VFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVK 318 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~--~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~ 318 (776)
-.+|++|+++|++||++|+|++|+ |.+| ..| .+|.++|++||+|||+||||+ |+.|+.
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~~~d-----------~~g--~~i~~aL~~aa~rGV~Vril~-D~~~~~------ 89 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNLRST-----------PEG--RLILDKLKEAAESGVKVTILV-DEQSGD------ 89 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecccCC-----------chH--HHHHHHHHHhccCCCeEEEEe-cCCCCC------
Confidence 468999999999999999999998 5454 234 899999999999999999996 987532
Q ss_pred cCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccC
Q 004061 319 TPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (776)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~ 398 (776)
...+.|+++||++........ +....+|+|++||||+ +||+||+||++ +|
T Consensus 90 ----------~~~~~L~~~Gv~v~~~~~~~~-----------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~ 139 (369)
T PHA03003 90 ----------KDEEELQSSNINYIKVDIGKL-----------NNVGVLLGSFWVSDDR--------RCYIGNASLTG-GS 139 (369)
T ss_pred ----------ccHHHHHHcCCEEEEEecccc-----------CCCCceeeeEEEEcCc--------EEEEecCccCC-cc
Confidence 345788999999876432110 0011368999999999 99999999999 55
Q ss_pred CCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcccchhhhhhhccccccccc
Q 004061 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (776)
Q Consensus 399 d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 478 (776)
.+..| ..+.|+|. ||+|.+|++.|..+|..+++....
T Consensus 140 ~~~~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~------------- 176 (369)
T PHA03003 140 ISTIK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVF------------- 176 (369)
T ss_pred cCccc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcc-------------
Confidence 33211 12578884 999999999999999876433100
Q ss_pred chhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccc
Q 004061 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (776)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~ 558 (776)
.... . + ...|... . .. ...+. ..+++.+ + |..... . .
T Consensus 177 --~~~~-~-----~---------~~~~~~~--~-~~-~~~~~--~~~~~~s---~-----P~~~~~---------~---~ 213 (369)
T PHA03003 177 --NRLC-C-----A---------CCLPVST--K-YH-INNPI--GGVFFSD---S-----PEHLLG---------Y---S 213 (369)
T ss_pred --cccc-c-----c---------cCCcccc--c-cc-ccCCC--cceEEec---C-----ChHHcC---------C---C
Confidence 0000 0 0 0000000 0 00 00000 1123322 2 221100 0 0
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~ 638 (776)
...+.++++++|.+||++|+|++|||+|.... +. ... ....+..+|.+++ +.|||+||||+|.+.. .+.
T Consensus 214 ~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~--d~---~~~--~~~~i~~AL~~AA-a~RGV~VRILv~~~~~--~~~- 282 (369)
T PHA03003 214 RTLDADVVLHKIKSAKKSIDLELLSLVPVIRE--DD---KTT--YWPDIYNALIRAA-INRGVKVRLLVGSWKK--NDV- 282 (369)
T ss_pred CCcCHHHHHHHHHHHhhEEEEEEeccccEEee--CC---CCc--cHHHHHHHHHHHH-HcCCCEEEEEEecCCc--CCc-
Confidence 13467999999999999999999999853210 00 000 0113333443332 1266999999996421 111
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEE
Q 004061 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (776)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IV 718 (776)
..+. ..+.|+++|+.. .-.+++|.+ .+|+|+|||
T Consensus 283 --------~~~~-------~~~~L~~~G~~~--~i~vri~~~-----------------------------~~H~K~~VV 316 (369)
T PHA03003 283 --------YSMA-------SVKSLQALCVGN--DLSVKVFRI-----------------------------PNNTKLLIV 316 (369)
T ss_pred --------hhhh-------HHHHHHHcCCCC--CceEeeecC-----------------------------CCCceEEEE
Confidence 0111 257788888542 112334422 179999999
Q ss_pred eeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 719 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 719 Dd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
||++++|||+|||.||+..| .|+++.+.+++++. ++++++.+.|.+
T Consensus 317 D~~~a~iGS~N~d~~s~~~~--~e~~~~~~~~~~a~---------~l~~~F~~dW~~ 362 (369)
T PHA03003 317 DDEFAHITSANFDGTHYLHH--AFVSFNTIDKELVK---------ELSAIFERDWTS 362 (369)
T ss_pred cCCEEEEeccccCchhhccC--CCeEEecCChhHHH---------HHHHHHHHHhCC
Confidence 99999999999999999854 99998888876653 788888899865
No 13
>PRK05443 polyphosphate kinase; Provisional
Probab=99.88 E-value=4.2e-21 Score=223.31 Aligned_cols=271 Identities=17% Similarity=0.173 Sum_probs=190.0
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004061 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~-----sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~ 315 (776)
-+.|..+++.|++|.+ +|.|+.|.+..+ ..|+++|++||++||+|+||+ +....
T Consensus 347 Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~iv~aL~~Aa~~Gk~V~vlv-e~kar---- 405 (691)
T PRK05443 347 YESFDPVVEFLRQAAADPDVLAIKQTLYRTSKD----------------SPIVDALIEAAENGKQVTVLV-ELKAR---- 405 (691)
T ss_pred ccCchHHHHHHHHhccCCCeeEEEEEEEEecCC----------------HHHHHHHHHHHHcCCEEEEEE-ccCcc----
Confidence 5668899999999998 999999988654 799999999999999999998 64321
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004061 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (776)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~ 395 (776)
+....+..+.+.|+++||+|.+.- + .+..|.|+++||++ .+.+-..++++|+.|+.+
T Consensus 406 ------fde~~n~~~~~~L~~aGv~V~y~~--~--------------~~k~HaK~~lid~~-e~~~~~~~~~iGTgN~n~ 462 (691)
T PRK05443 406 ------FDEEANIRWARRLEEAGVHVVYGV--V--------------GLKTHAKLALVVRR-EGGGLRRYVHLGTGNYNP 462 (691)
T ss_pred ------ccHHHHHHHHHHHHHcCCEEEEcc--C--------------CccceeEEEEEEee-cCCceeEEEEEcCCCCCc
Confidence 111233567788999999996521 1 12489999999996 122233589999999988
Q ss_pred ccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC-hHHHHHHHHHHHHhhhcccchhhhhhhccccc
Q 004061 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG-PAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (776)
Q Consensus 396 ~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~G-pav~~l~~~F~~~W~~~~~~~~~~~~~~~~~~ 474 (776)
+.. ..|.|+++.... ..+.++.+.|...|.......
T Consensus 463 -~s~-------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~----------- 499 (691)
T PRK05443 463 -KTA-------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK----------- 499 (691)
T ss_pred -chh-------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-----------
Confidence 331 357899999654 578999999999976421110
Q ss_pred ccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccC
Q 004061 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (776)
Q Consensus 475 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~ 554 (776)
+. .++-+ |...
T Consensus 500 -----------------------------------------------~~-~l~~s---------P~~~------------ 510 (691)
T PRK05443 500 -----------------------------------------------LR-KLLVS---------PFTL------------ 510 (691)
T ss_pred -----------------------------------------------cc-EEeec---------CccH------------
Confidence 00 01111 2211
Q ss_pred CccchhhHHHHHHHHHHhccc----eEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEe---
Q 004061 555 DVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII--- 627 (776)
Q Consensus 555 ~~~~~~~i~~a~~~lI~~Ak~----~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Ill--- 627 (776)
+..+...+...|.+||+ +|+|.++|+. +. .+..++..|++ +||+|+||+
T Consensus 511 ----~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l~-------d~---------~ii~aL~~As~----~GV~V~liVRGi 566 (691)
T PRK05443 511 ----RERLLELIDREIANARAGKPARIIAKMNSLV-------DP---------QIIDALYEASQ----AGVKIDLIVRGI 566 (691)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC-------CH---------HHHHHHHHHHH----CCCeEEEEEecc
Confidence 46788899999999999 9999999954 22 34444444444 559999999
Q ss_pred ----cCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCccccccc
Q 004061 628 ----PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQK 703 (776)
Q Consensus 628 ----p~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (776)
|..| |.+|...+ ++ +...++++ ++| |.+
T Consensus 567 C~l~pgip-g~sd~i~v--------~s-------~v~r~Leh-~rI--------y~f----------------------- 598 (691)
T PRK05443 567 CCLRPGVP-GLSENIRV--------RS-------IVGRFLEH-SRI--------YYF----------------------- 598 (691)
T ss_pred cccCCCCC-CCCCCEEE--------HH-------HHHHHHhc-CEE--------EEE-----------------------
Confidence 2212 23444322 12 25566663 555 322
Q ss_pred CceeceEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcc
Q 004061 704 NQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (776)
Q Consensus 704 ~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~ 753 (776)
. ++ ||.+++|||||||.|||. ++.|+++.|+|++++
T Consensus 599 -~--~g---------d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~~ 634 (691)
T PRK05443 599 -G--NG---------GDEEVYISSADWMPRNLD--RRVEVLFPILDPRLK 634 (691)
T ss_pred -e--CC---------CCcEEEEECCCCCccccc--ceEEEeEEEeCHHHH
Confidence 1 11 899999999999999999 569999999999864
No 14
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.87 E-value=5.1e-21 Score=221.23 Aligned_cols=268 Identities=16% Similarity=0.173 Sum_probs=187.1
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEec---CCCcc
Q 004061 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD---DKTSH 312 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~-----sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D---~~gs~ 312 (776)
-+.|..+++.|++|.+ +|.|+.|.+..+ ..|+++|.+||++|++|++++ + .++..
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~----------------s~ii~aL~~Aa~~Gk~V~v~v-eLkArfde~ 400 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKD----------------SPIIDALIEAAENGKEVTVVV-ELKARFDEE 400 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEecCC----------------cHHHHHHHHHHHcCCEEEEEE-Eehhhccch
Confidence 5668899999999998 899999998654 799999999999999999998 7 33321
Q ss_pred CccccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEcccc
Q 004061 313 DKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGID 392 (776)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~N 392 (776)
.+-.+.+.|+++|++|.+- .+ .++.|+|+++||.+- +.+-...+++|.-|
T Consensus 401 -------------~ni~wa~~le~aG~~viyg--~~--------------~~k~H~K~~li~r~~-~~~~~~y~~igTgN 450 (672)
T TIGR03705 401 -------------ANIRWARRLEEAGVHVVYG--VV--------------GLKTHAKLALVVRRE-GGELRRYVHLGTGN 450 (672)
T ss_pred -------------hhHHHHHHHHHcCCEEEEc--CC--------------CeeeeeEEEEEEEee-CCceEEEEEecCCC
Confidence 2346677899999999862 11 246899999999861 11223467888888
Q ss_pred CCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeE-EeChHHHHHHHHHHHHhhhcccchhhhhhhcc
Q 004061 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKR 471 (776)
Q Consensus 393 i~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~-i~Gpav~~l~~~F~~~W~~~~~~~~~~~~~~~ 471 (776)
+.... ...|+|+++. ..+..+.|+.+.|...|.......
T Consensus 451 ~n~~t--------------------------------a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------- 490 (672)
T TIGR03705 451 YHPKT--------------------------------ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------- 490 (672)
T ss_pred CCCcc--------------------------------cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh--------
Confidence 66511 1468999998 778899999999999886422110
Q ss_pred cccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhccccc
Q 004061 472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551 (776)
Q Consensus 472 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~ 551 (776)
| + .++ .+ |...
T Consensus 491 ---~--------~----------------------------------------~l~----~~-----P~~~--------- 501 (672)
T TIGR03705 491 ---F--------K----------------------------------------HLL----VS-----PFTL--------- 501 (672)
T ss_pred ---h--------H----------------------------------------HHH----hC-----cchH---------
Confidence 0 0 000 01 2211
Q ss_pred ccCCccchhhHHHHHHHHHHhccc----eEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEe
Q 004061 552 CAKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 627 (776)
Q Consensus 552 ~~~~~~~~~~i~~a~~~lI~~Ak~----~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Ill 627 (776)
+..+...+.+.|.+||+ +|+|.++|+. +. .+..++..|+. +||+|++|+
T Consensus 502 -------~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l~-------D~---------~ii~aL~~As~----aGV~V~Liv 554 (672)
T TIGR03705 502 -------RKRLLELIDREIENARAGKPARIIAKMNSLV-------DP---------DLIDALYEASQ----AGVKIDLIV 554 (672)
T ss_pred -------HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC-------CH---------HHHHHHHHHHH----CCCeEEEEE
Confidence 46788889999999999 9999999964 22 34444444444 559999999
Q ss_pred -------cCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccc
Q 004061 628 -------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSD 700 (776)
Q Consensus 628 -------p~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~ 700 (776)
|..| |.++...+. + +...+++ |++| |.+
T Consensus 555 RGiCcL~pgip-g~sd~i~v~--------s-------iv~r~Le-h~rI--------y~f-------------------- 589 (672)
T TIGR03705 555 RGICCLRPGVP-GLSENIRVR--------S-------IVGRFLE-HSRI--------YYF-------------------- 589 (672)
T ss_pred ecccccCCCCC-CCCCCEEEE--------E-------EhhHhhC-cCEE--------EEE--------------------
Confidence 2211 234433221 1 2455556 5554 322
Q ss_pred cccCceeceEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcc
Q 004061 701 SQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (776)
Q Consensus 701 ~~~~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~ 753 (776)
. ++ ||.+++||||||+.|||. ++.|+++.|+|+.+.
T Consensus 590 ----~--~~---------~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~~ 625 (672)
T TIGR03705 590 ----G--NG---------GEEKVYISSADWMTRNLD--RRVEVLFPIEDPTLK 625 (672)
T ss_pred ----e--CC---------CCcEEEEECCCCCCCccc--ceEEEEEEEcCHHHH
Confidence 0 01 688999999999999999 669999999999764
No 15
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.86 E-value=3e-21 Score=187.61 Aligned_cols=157 Identities=50% Similarity=0.808 Sum_probs=128.8
Q ss_pred eeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (776)
..++||+|+|+|++|++|++||..++.++++|.+...|...... .+. + .......++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~--~-------~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK---RPS--S-------HRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccc---ccc--c-------cccCCCCCcCeEEEEEECCe
Confidence 35899999999999999999998777788888755444322100 000 0 01112345899999999987
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCCCCc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g 171 (776)
.++||++++++.||+|||+|.|.+.++...|.|+|||++.+++++||++.+++.++..++..+.|++|....+++.+..|
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 77899999999999999999999988877899999999998889999999999999988889999999877788877889
Q ss_pred eEEEEEEEE
Q 004061 172 SIQLELKFT 180 (776)
Q Consensus 172 ~i~l~l~~~ 180 (776)
+|+++++|+
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999984
No 16
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.86 E-value=6.9e-20 Score=194.12 Aligned_cols=359 Identities=16% Similarity=0.200 Sum_probs=211.3
Q ss_pred chHHHHHHHHHhccceEEEEEEeecc---cceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccc
Q 004061 242 TCWEDICHAISEAHHLIYIVGWSVFH---KIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVK 318 (776)
Q Consensus 242 ~~~~~l~~~I~~A~~sI~I~~~~~~~---~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~ 318 (776)
..+++++++|++|+++++|..|++.= ++++....+ .. +..+...|..++.+||.|||.. +...... +
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~dsSt---~~--G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~--- 141 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDSST---QY--GEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-P--- 141 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeeccccceeccCCCcc---hH--HHHHHHHHHHhccCCeEEEEEe-ecCCCCC-C---
Confidence 45789999999999999999887642 111111111 11 3789999999999999999986 4432111 1
Q ss_pred cCCccccCcHHHHhhhcCCC-ceEEec--cCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004061 319 TPGVMATHDEETKKFFKHSS-VNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (776)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~g-v~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~ 395 (776)
......|.+.| ++++-- +++.+ -...|.|++|||++ .-|+||+|+++
T Consensus 142 ---------~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW 191 (456)
T KOG3603|consen 142 ---------NADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW 191 (456)
T ss_pred ---------cccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch
Confidence 12234455666 666532 22221 12489999999999 99999999999
Q ss_pred ccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeC--hHHHHHHHHHHHHhhhcccchhhhhhhcccc
Q 004061 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVS 473 (776)
Q Consensus 396 ~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~G--pav~~l~~~F~~~W~~~~~~~~~~~~~~~~~ 473 (776)
|-.+ .-..+++.++. ..+.||.+.|.++|....... -.+.
T Consensus 192 -rSlT-------------------------------qvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s------~~p~ 233 (456)
T KOG3603|consen 192 -RSLT-------------------------------QVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKS------LIPK 233 (456)
T ss_pred -hhcc-------------------------------ceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCc------cCCC
Confidence 5433 23355666654 578999999999998765432 0112
Q ss_pred cccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhccccccc
Q 004061 474 HWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICA 553 (776)
Q Consensus 474 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~ 553 (776)
.|....-...+. + .|. .. ..+......++..| |. . .++
T Consensus 234 ~wp~~~st~~N~------~-----------~p~------~~-~~dg~~~~~y~saS---------P~---~------~~~ 271 (456)
T KOG3603|consen 234 KWPNCYSTHYNK------P-----------LPM------KI-AVDGTPATPYISAS---------PP---P------LNP 271 (456)
T ss_pred CCcccccccccc------c-----------Ccc------ee-ecCCCCcceEEccC---------CC---C------CCC
Confidence 232221111000 0 000 00 00011122333332 11 0 111
Q ss_pred CCccchhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCC
Q 004061 554 KDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEG 633 (776)
Q Consensus 554 ~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g 633 (776)
.+ +..-.+|+++.|..|+++|||.-.-|.|...+ .+. .+--.+..|++.|+- |||+||+|++.|.+.
T Consensus 272 ~g---rt~DL~ail~~i~~A~~fv~isVMdY~Ps~~y---~k~---~~fw~iDdaiR~aa~----RgV~vR~lvs~~~~~ 338 (456)
T KOG3603|consen 272 SG---RTWDLEAILNTIDEAQKFVYISVMDYFPSTIY---SKN---HRFWEIDDAIRRAAV----RGVKVRLLVSCWKHS 338 (456)
T ss_pred CC---CchhHHHHHHHHHHHhhheeeeehhccchhee---ecC---cchhhhhHHHHHHhh----cceEEEEEEeccCCC
Confidence 11 24457899999999999999996655543211 000 000135566666655 679999999998754
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEee
Q 004061 634 DPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHA 713 (776)
Q Consensus 634 ~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHs 713 (776)
++. +..+ -++++. +...+....+ -+++|-...-+. .+ -......|+
T Consensus 339 ~~~---m~~~----L~SLq~----l~~~~~~~~i------qvk~f~VP~~~~----------------~~-ip~~Rv~Hn 384 (456)
T KOG3603|consen 339 EPS---MFRF----LRSLQD----LSDPLENGSI------QVKFFIVPQTNI----------------EK-IPFARVNHN 384 (456)
T ss_pred Cch---HHHH----HHHHHH----hcCccccCce------EEEEEEeCCCcc----------------cc-Cchhhhccc
Confidence 432 1111 111110 1112222122 345564311100 00 112458999
Q ss_pred eeEEEeeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 714 KGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 714 K~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
|+||-+. .++|||+||..-.|..+ .-++++|..+. .....+.+++++++|-|..
T Consensus 385 KymVTe~-aayIGTSNws~dYf~~T--aG~~ivv~q~~-----~~~~~~~ql~~vFeRdW~S 438 (456)
T KOG3603|consen 385 KYMVTES-AAYIGTSNWSGDYFTST--AGTAIVVRQTP-----HKGTLVSQLKAVFERDWNS 438 (456)
T ss_pred eeEEeec-ceeeeccCCCccceecc--CceEEEEecCC-----CCCcHHHHHHHHHhhcccc
Confidence 9999998 89999999999999866 88999997663 2234567899999999975
No 17
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.79 E-value=8.6e-19 Score=162.04 Aligned_cols=117 Identities=23% Similarity=0.491 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|+|+|++|++++..+ .++ +||||+|.+++... ||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~~-kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAVY-ET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEEE-Ee
Confidence 89999999999988766 454 99999999988764 99
Q ss_pred ccccC-CCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEcccc-ccccCceeEEEEEccCCCCCCCCCCceE
Q 004061 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (776)
Q Consensus 97 ~~~~~-~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~-~~~~~~~~~~w~~l~~~~~~~~~~~g~i 173 (776)
++..+ +.||+|||+|.|.+.+....|.|+|||++.++ +++||.+.|++. .+..|+..+.|++|...++++ ..|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEE
Confidence 99876 89999999999999887777999999999998 899999999996 577788899999996555443 67999
Q ss_pred EEEEEE
Q 004061 174 QLELKF 179 (776)
Q Consensus 174 ~l~l~~ 179 (776)
+|+++|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999987
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.75 E-value=2.3e-17 Score=153.45 Aligned_cols=120 Identities=26% Similarity=0.391 Sum_probs=106.5
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
+|.|+|++|++|+..+..+. +||||.+.+.+..+.+|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 48999999999998876654 899999999886778999
Q ss_pred cccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEEEE
Q 004061 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~ 176 (776)
+++++.||.|||+|.|.+..+...|.|+|||++.++ +++||.+.+++.++..++..+.|++|.+..+. +..|+|.|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEE
Confidence 999999999999999999877777999999999996 99999999999999988889999999655442 468999999
Q ss_pred EEEEe
Q 004061 177 LKFTP 181 (776)
Q Consensus 177 l~~~p 181 (776)
++|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99976
No 19
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=3.2e-17 Score=152.61 Aligned_cols=114 Identities=24% Similarity=0.374 Sum_probs=99.9
Q ss_pred EEEEEEEeec---CCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004061 19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (776)
Q Consensus 19 l~v~i~~a~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (776)
|+|+|++|++ |+.++..+. +||||.|.++++. .|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~r 38 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-VR 38 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-eE
Confidence 8999999999 777666554 8999999998865 59
Q ss_pred eccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCC-------CCceeEEEEccccccccCceeEEEEEccCCCCCCCC
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~-------~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (776)
|++++++.||+|||+|.|.+..+...|+|+|||++.. ++++||.+.+++..+..+...+.||+|....+++.+
T Consensus 39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 118 (126)
T cd08379 39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118 (126)
T ss_pred cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence 9999999999999999999988777899999999886 699999999999999988889999999766555556
Q ss_pred CCceEEE
Q 004061 169 PGASIQL 175 (776)
Q Consensus 169 ~~g~i~l 175 (776)
..|+|++
T Consensus 119 ~~g~l~~ 125 (126)
T cd08379 119 KMGELEC 125 (126)
T ss_pred CCcEEEe
Confidence 7888875
No 20
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.73 E-value=6.3e-17 Score=153.72 Aligned_cols=126 Identities=24% Similarity=0.472 Sum_probs=109.9
Q ss_pred eeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeee
Q 004061 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (776)
Q Consensus 14 ~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (776)
-+-..|.|.|++|++||.+ .+|||+|.+++..+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~v 40 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTLY 40 (146)
T ss_pred EEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEEE
Confidence 4566799999999999853 48999999999999
Q ss_pred eeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCC-C----CCceeEEEEccccccccCceeEEEEEccCCCCCC--
Q 004061 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV-F----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP-- 166 (776)
Q Consensus 94 ~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~-~----~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~-- 166 (776)
+||+++.++.||.|+|+|.|.+.++...+.|.||..+. . ++++||.+.|++.++..+..++.||+|+...+++
T Consensus 41 aRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~ 120 (146)
T cd04013 41 ARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKS 120 (146)
T ss_pred EEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCcc
Confidence 99999999999999999999998888889999976542 2 4799999999999999999999999998777765
Q ss_pred -----CCCCceEEEEEEEEecCCCC
Q 004061 167 -----PKPGASIQLELKFTPCDKNP 186 (776)
Q Consensus 167 -----~~~~g~i~l~l~~~p~~~~~ 186 (776)
....++|+++++|.+....|
T Consensus 121 ~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 121 GGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccCCCCEEEEEEEEEEeeeCC
Confidence 45678999999999976544
No 21
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.72 E-value=5.2e-17 Score=152.15 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=99.2
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (776)
|+|+|++|++|+.++..+. +||||+|.+.+.. .||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 5799999999998876554 8999999998755 59999
Q ss_pred ccCCCCCeeccEEEEEecC------CCceEEEEEEEcCCCC-CceeEEEEccccccc--cCceeEEEEEccCCCCCCCCC
Q 004061 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (776)
Q Consensus 99 ~~~~~~P~w~e~f~~~~~~------~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~--~~~~~~~w~~l~~~~~~~~~~ 169 (776)
++++.||+|||+|.|.+.. ....|.++|||++.++ +++||.+.|++.++. .+.....|++|....++..+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999877 3456999999999987 899999999999987 566788999996555544456
Q ss_pred CceEEEEEE
Q 004061 170 GASIQLELK 178 (776)
Q Consensus 170 ~g~i~l~l~ 178 (776)
.|+|+++++
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999863
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.72 E-value=1.4e-16 Score=149.25 Aligned_cols=120 Identities=21% Similarity=0.416 Sum_probs=101.3
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
+.|+|+|++|++|+.++ . +||||.|.+++..+.||
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~------------------------------------------~DPYv~v~l~~~~~~kT 38 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V------------------------------------------PHPYCVISLNEVKVART 38 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C------------------------------------------CCeeEEEEECCEeEEEe
Confidence 56999999999998632 2 89999999988777799
Q ss_pred ccccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (776)
+++ ++.||.|||+|.|.+..+. ..+.|.|||++..+ +++||.+.+++.++..+...+.|++|......+....|+|+
T Consensus 39 ~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~ 117 (126)
T cd08400 39 KVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLR 117 (126)
T ss_pred ecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEE
Confidence 985 5899999999999976654 45899999998887 89999999999999988888999999654433345789999
Q ss_pred EEEEEEec
Q 004061 175 LELKFTPC 182 (776)
Q Consensus 175 l~l~~~p~ 182 (776)
|+++|.+.
T Consensus 118 l~l~~~~~ 125 (126)
T cd08400 118 IRARYSHE 125 (126)
T ss_pred EEEEEEcc
Confidence 99999874
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.71 E-value=1.2e-16 Score=148.48 Aligned_cols=118 Identities=26% Similarity=0.426 Sum_probs=100.0
Q ss_pred EEEEEEEeecCCCCCC-CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
|.|+|++|++|+.++. .+. +||||.|.+.+...++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~------------------------------------------sDpYv~v~l~~~~~~kT~ 39 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM------------------------------------------RDCYCTVNLDQEEVFRTK 39 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC------------------------------------------cCcEEEEEECCccEEEee
Confidence 6899999999998653 222 899999999876678999
Q ss_pred cccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEEEE
Q 004061 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~ 176 (776)
++++|.+|+|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+...+.|++| .+.....+..|+|+|+
T Consensus 40 v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L-~~~~~~~~~~G~i~l~ 118 (121)
T cd08401 40 TVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPL-QPVDADSEVQGKVHLE 118 (121)
T ss_pred EEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEE-EccCCCCcccEEEEEE
Confidence 999999999999999999876667999999999987 89999999999999877778999999 4432222458999999
Q ss_pred EEE
Q 004061 177 LKF 179 (776)
Q Consensus 177 l~~ 179 (776)
++|
T Consensus 119 ~~~ 121 (121)
T cd08401 119 LRL 121 (121)
T ss_pred EEC
Confidence 875
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.69 E-value=1.4e-16 Score=147.35 Aligned_cols=116 Identities=26% Similarity=0.504 Sum_probs=99.0
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|+|+|++|++|++++..+. +||||+|.+.+.. .+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence 789999999999998886665 8999999998744 689
Q ss_pred ccccC-CCCCeeccEEEEEecCC-CceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 004061 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (776)
Q Consensus 97 ~~~~~-~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (776)
+++++ +.||.|||+|.|.+..+ ...|.|+|||++..++++||.+.+++.++..+.....|++|. ..+ +..|+|+
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~-~~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELT-LKG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEec-cCC---cEeeEEE
Confidence 88754 79999999999999875 345999999999877999999999999987676778999984 333 4689999
Q ss_pred EEEEE
Q 004061 175 LELKF 179 (776)
Q Consensus 175 l~l~~ 179 (776)
|+++|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99986
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.68 E-value=8e-16 Score=144.10 Aligned_cols=104 Identities=20% Similarity=0.344 Sum_probs=88.7
Q ss_pred CCcEEEEEECC-eeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEE
Q 004061 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (776)
Q Consensus 80 ~dpyv~v~~~~-~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~ 157 (776)
+||||.+.++. ....+|++++++.||+|||.|.|.+......|.|+|||++..+ +++||.+.+++.++..+.....|+
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 89999999974 3447999999999999999999999766667999999999987 899999999999999777778999
Q ss_pred EccCCCCCCCCCCceEEEEEEEEecC
Q 004061 158 DIIAPSGSPPKPGASIQLELKFTPCD 183 (776)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~~p~~ 183 (776)
++....+......|+|.+++.|.+..
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEeccc
Confidence 98533332335799999999998764
No 26
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.67 E-value=8e-16 Score=148.13 Aligned_cols=121 Identities=26% Similarity=0.419 Sum_probs=101.7
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (776)
|.|+|++|++|++++..+. +||||+|.+++.. .+|++
T Consensus 2 L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk~ 38 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTRP 38 (150)
T ss_pred EEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeEe
Confidence 7999999999999887665 8999999998854 69998
Q ss_pred ccC-CCCCeeccEEEEEecCCC-ceEEEEEEEcCCCC-CceeEEEEccccccccC----ceeEEEEEccCCCC-----CC
Q 004061 99 LKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----SP 166 (776)
Q Consensus 99 ~~~-~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~----~~~~~w~~l~~~~~-----~~ 166 (776)
..+ +.||+|||+|.|.+..+. ..+.|+|||++..+ +++||.+.|+|.++..+ ...+.||+|....+ ++
T Consensus 39 ~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~ 118 (150)
T cd04019 39 SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK 118 (150)
T ss_pred ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccccccc
Confidence 876 699999999999997754 46999999999875 89999999999998643 45789999965543 34
Q ss_pred CCCCceEEEEEEEEec
Q 004061 167 PKPGASIQLELKFTPC 182 (776)
Q Consensus 167 ~~~~g~i~l~l~~~p~ 182 (776)
.+..|+|+|.+.|.+.
T Consensus 119 ~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 119 RKFASRIHLRLCLDGG 134 (150)
T ss_pred CcccccEEEEEEecCc
Confidence 4678999999999754
No 27
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.66 E-value=9.5e-16 Score=143.82 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=99.9
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
.|.|+|++|++|+..+..+. +||||+|.+.+.. .||+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 37999999999998775554 8999999998865 5999
Q ss_pred cccCCCCCeeccEEEEEecCCC----ceEEEEEEEcCCC--CCceeEEEEccccccc-cCceeEEEEEccCCCCCCCCCC
Q 004061 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~~----~~l~i~v~~~~~~--~~~~iG~~~i~l~~~~-~~~~~~~w~~l~~~~~~~~~~~ 170 (776)
+++++.||.|||+|.|.+..+. ..|+|+|||++.+ ++++||.+.+++.++. .++....||+|. ..+...+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence 9999999999999999988643 3599999999887 4899999999999987 567778999994 334333568
Q ss_pred ceEEEEEEEE
Q 004061 171 ASIQLELKFT 180 (776)
Q Consensus 171 g~i~l~l~~~ 180 (776)
|+|+|++.+.
T Consensus 117 G~l~l~~~~~ 126 (127)
T cd04022 117 GEIGLKVYIT 126 (127)
T ss_pred EEEEEEEEEc
Confidence 9999999875
No 28
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.65 E-value=1.3e-15 Score=151.05 Aligned_cols=145 Identities=23% Similarity=0.267 Sum_probs=110.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
+++++.++++|.+|+++|+|++|.|.++. . . ....|.++|.+|++|||+||||+ |.......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~-----~--~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----T-----E--YGPVILDALLAAARRGVKVRILV-DEWSNTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----c-----c--cchHHHHHHHHHHHCCCEEEEEE-cccccCCc------
Confidence 77899999999999999999999988631 0 0 12799999999999999999998 65533220
Q ss_pred CccccCcHHHHhhhcCC---CceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcc
Q 004061 321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~---gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r 397 (776)
.........|... ++++...+.... ...++|+|++|||++ ++++||.|+++.+
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0112345556554 788775442210 124699999999999 9999999999944
Q ss_pred CCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh--HHHHHHHHHHHHhhhc
Q 004061 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (776)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp--av~~l~~~F~~~W~~~ 459 (776)
+ ..++|+.+.+.+| ++.++.+.|..+|+..
T Consensus 138 ~--------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L--------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h--------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 4 2467999999999 6999999999999874
No 29
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.65 E-value=1.9e-15 Score=142.77 Aligned_cols=127 Identities=24% Similarity=0.461 Sum_probs=102.2
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
|.|.|+|+|++|++|+..+..+.+ .|.. -....+||||++.+++....
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~~~-----------------------------~~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH---AVPK-----------------------------KGSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh---cccc-----------------------------cCccCcCcEEEEEECCEEEe
Confidence 679999999999999887653210 0000 00112899999999987778
Q ss_pred eeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEcccccccc--CceeEEEEEccCCCCCCCCCCc
Q 004061 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (776)
Q Consensus 95 ~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~--~~~~~~w~~l~~~~~~~~~~~g 171 (776)
+|++++++.+|.|||+|.|.+. +...|.|.||+++.++ +++||.+.++|.++.. +...+.|++| .+.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL--------EPQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc--------cCCc
Confidence 9999999999999999999996 4457999999998876 8999999999999886 5678899999 2469
Q ss_pred eEEEEEEEEec
Q 004061 172 SIQLELKFTPC 182 (776)
Q Consensus 172 ~i~l~l~~~p~ 182 (776)
+|++.++|...
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998753
No 30
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.65 E-value=2.7e-15 Score=138.86 Aligned_cols=117 Identities=30% Similarity=0.526 Sum_probs=99.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|+|+|++|++|+.++..+. +||||.|.+.+.. .+|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 789999999999998876554 8999999998755 699
Q ss_pred ccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (776)
++++++.||.|+|+|.|.+......|.|+|||++..+ +++||.+.+++.++..+ ...|++|...... .+..|+|.+
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~~~-~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG--ERKWYALKDKKLR-TRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC--CceEEECcccCCC-CceeeEEEE
Confidence 9999999999999999998776677999999999876 89999999999998755 3579998644333 257899999
Q ss_pred EEEE
Q 004061 176 ELKF 179 (776)
Q Consensus 176 ~l~~ 179 (776)
++.|
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9886
No 31
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.65 E-value=1.4e-15 Score=141.39 Aligned_cols=97 Identities=25% Similarity=0.455 Sum_probs=82.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCCCceeEEEEccccccccC-----cee
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG-----ELI 153 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~-----~~~ 153 (776)
+||||+|.+.+. ..||++++++.||+|||+|.|.+..+ ...|.++|||++..++++||.+.+++.++... ...
T Consensus 17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 899999999875 46999999999999999999998774 45599999999988899999999999998642 235
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004061 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (776)
..||+|....+ .+..|+|+|+++|
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEe
Confidence 68999965543 3578999999998
No 32
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.4e-15 Score=141.87 Aligned_cols=121 Identities=31% Similarity=0.460 Sum_probs=99.3
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-eeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~~~ 95 (776)
|.|+|+|++|++|+..+..+. .+||||.|.+.+ ....+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999986553221 179999999987 56689
Q ss_pred eccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (776)
|++++++.+|.|||+|.|.+......|.|+|||.+..+ +++||.+.+++.++..+.....|...+...+ +..|+|+
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~---k~~G~i~ 117 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG---KPVGELN 117 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCC---ccceEEE
Confidence 99999999999999999999865677999999999886 8999999999999986655544433324434 3579999
Q ss_pred EEEEEEe
Q 004061 175 LELKFTP 181 (776)
Q Consensus 175 l~l~~~p 181 (776)
++++|.|
T Consensus 118 ~~l~~~p 124 (124)
T cd04044 118 YDLRFFP 124 (124)
T ss_pred EEEEeCC
Confidence 9999987
No 33
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.8e-15 Score=143.05 Aligned_cols=120 Identities=21% Similarity=0.397 Sum_probs=99.6
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe------
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~------ 91 (776)
.|+|+|++|++|+.++..+. +||||.|.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 38999999999998886654 899999999653
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCc------eeEEEEEccCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE------LISRWYDIIAPSG 164 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~------~~~~w~~l~~~~~ 164 (776)
...+|++++++.+|.|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+. ....||+|... .
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-~ 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-S 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-C
Confidence 246999999999999999999999876667999999999987 899999999999988543 24589998533 2
Q ss_pred CCCCCCceEEEEEEEE
Q 004061 165 SPPKPGASIQLELKFT 180 (776)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (776)
...+..|+|++++.|+
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 2235799999999984
No 34
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.64 E-value=4.4e-15 Score=136.93 Aligned_cols=113 Identities=26% Similarity=0.383 Sum_probs=98.2
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
.|+|+|++|++|+.++..+. +||||.+.+.+.. .+|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~ 37 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSK 37 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eecc
Confidence 37899999999998876554 8999999997754 6999
Q ss_pred cccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 004061 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (776)
+++++.||.|||+|.|.+..+ ...|+|+|||++.++ +++||.+.+++.++..++..+.|++| .+ ..|+|++
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L-~~------~~G~~~~ 110 (116)
T cd08376 38 VCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-ED------GEGSLLL 110 (116)
T ss_pred cccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEc-cC------CCcEEEE
Confidence 999999999999999998876 456999999999986 89999999999999988889999998 32 2599999
Q ss_pred EEEEE
Q 004061 176 ELKFT 180 (776)
Q Consensus 176 ~l~~~ 180 (776)
.+.|.
T Consensus 111 ~~~~~ 115 (116)
T cd08376 111 LLTLT 115 (116)
T ss_pred EEEec
Confidence 88874
No 35
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.64 E-value=2.8e-15 Score=138.92 Aligned_cols=113 Identities=27% Similarity=0.525 Sum_probs=96.1
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--eeeeee
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~~~T 96 (776)
|.|+|++|++|++.+..+. +||||++.+.+ ....||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998775554 89999999964 345799
Q ss_pred ccccCCCCCeeccEEEEEecCCCc-eEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~~-~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (776)
++++++.||+|||+|.|.+..+.. .|.|+|||++.+++++||++.+++.++..|.....|++| .++ ..|+|.+
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~~-----~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NPQ-----GKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CCC-----CCceEEE
Confidence 999999999999999999877543 499999999988889999999999999988889999998 332 3688887
Q ss_pred EEEE
Q 004061 176 ELKF 179 (776)
Q Consensus 176 ~l~~ 179 (776)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 7754
No 36
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.63 E-value=3.4e-15 Score=138.85 Aligned_cols=117 Identities=25% Similarity=0.507 Sum_probs=98.8
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (776)
|.|+|++|++|++++..+. +||||.|.+.+...+||++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 7899999999999887665 8999999998876789999
Q ss_pred ccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 004061 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (776)
Q Consensus 99 ~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~-~~~~~w~~l~~~~~~~~~~~g~i~l~ 176 (776)
++++.||+|||.|.|.+......|.|+|||++.++ +++||.+.++++++..+ ...+.|++|..... .....|+|.|.
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~-~~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDP-DEEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCC-CCccccEEEEE
Confidence 99999999999999999877678999999999987 89999999999888743 34789999943222 12467999888
Q ss_pred EE
Q 004061 177 LK 178 (776)
Q Consensus 177 l~ 178 (776)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 37
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.63 E-value=9.8e-16 Score=144.84 Aligned_cols=97 Identities=29% Similarity=0.576 Sum_probs=89.0
Q ss_pred eeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeee
Q 004061 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (776)
Q Consensus 14 ~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (776)
.+.|.|+|+|++|.+|...|..++ +||||.+++++++.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~l 40 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQKL 40 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCeee
Confidence 468999999999999999887555 99999999999875
Q ss_pred eeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCcee
Q 004061 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (776)
Q Consensus 94 ~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (776)
||++++++.||+|||.|+|.+..+...|+++|||+|.++ ||++|.++|++..+......
T Consensus 41 -kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 41 -KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred -eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999999999999999999999999999998 99999999999998865443
No 38
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.63 E-value=2.4e-15 Score=168.13 Aligned_cols=162 Identities=16% Similarity=0.184 Sum_probs=111.6
Q ss_pred CCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCC
Q 004061 520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599 (776)
Q Consensus 520 ~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~ 599 (776)
..|.+++++|+|.+- .|+. .-.+.+++|+++|.+||++|+|++|||++.. . .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d-----~-~--- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSD-----E-V--- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCc-----c-c---
Confidence 356889999987652 2221 1257889999999999999999999999421 0 0
Q ss_pred CCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEee
Q 004061 600 DNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC 679 (776)
Q Consensus 600 ~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~ 679 (776)
.......+..+|+++++ |||+||||++.. +.+. . ..+.|.++|+++ ..|.
T Consensus 56 ~~~~G~~i~~aL~~aA~--rGV~VRIL~d~~-----~~~~----------~-------~~~~L~~aGv~v------~~~~ 105 (424)
T PHA02820 56 GTNFGTMILNEIIQLPK--RGVRVRIAVNKS-----NKPL----------K-------DVELLQMAGVEV------RYID 105 (424)
T ss_pred cchhHHHHHHHHHHHHH--CCCEEEEEECCC-----CCch----------h-------hHHHHHhCCCEE------EEEe
Confidence 00012345566666655 559999999942 1111 0 146688899876 1232
Q ss_pred cCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEeeeEEEEccccccCcCCCCCCcccceeeeeC-CCcchhccc
Q 004061 680 LGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQ-PHHTWARKL 758 (776)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d-~~~~~~~~~ 758 (776)
.. .+ ...++|+|++|||+++++|||+|||.||+..| .|+++.+.+ ++++
T Consensus 106 ~~---------------------~~--~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~~g~~v----- 155 (424)
T PHA02820 106 IT---------------------NI--LGGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFNNSNLA----- 155 (424)
T ss_pred cC---------------------CC--CcccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEecchHHH-----
Confidence 10 01 13589999999999999999999999999844 999998875 4443
Q ss_pred CCCCchhHHHHHhhh
Q 004061 759 KHPHGQEVTLVRASW 773 (776)
Q Consensus 759 ~~~~~~i~~~r~~lw 773 (776)
..++.++.+.|
T Consensus 156 ----~~L~~~F~~dW 166 (424)
T PHA02820 156 ----ADLTQIFEVYW 166 (424)
T ss_pred ----HHHHHHHHHHH
Confidence 25667777777
No 39
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.62 E-value=5.5e-15 Score=138.63 Aligned_cols=120 Identities=22% Similarity=0.421 Sum_probs=99.2
Q ss_pred eEEEEEEEEeecCCCCCC--CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
|.|.|+|++|++|+..+. .+. +||||.|.+.+.. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 789999999999998776 443 8999999997654 6
Q ss_pred eeccccCCCCCeeccEEEEEecC-CCceEEEEEEEcCCCC-CceeEEEEcccccccc---CceeEEEEEccCCC-CCCCC
Q 004061 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPS-GSPPK 168 (776)
Q Consensus 95 ~T~~~~~~~~P~w~e~f~~~~~~-~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l~~~~-~~~~~ 168 (776)
+|++++++.+|.|||+|.|.+.. ....|.|+|||++..+ +++||.+.+++.++.. .+....|++|.... ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4567999999999886 8999999999999872 34467999985432 22234
Q ss_pred CCceEEEEEEE
Q 004061 169 PGASIQLELKF 179 (776)
Q Consensus 169 ~~g~i~l~l~~ 179 (776)
..|+|+|.+.+
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999998864
No 40
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.62 E-value=4.9e-15 Score=137.48 Aligned_cols=120 Identities=26% Similarity=0.451 Sum_probs=97.6
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|+|+|++|++|+.++.... ..+ ...+||||+|.+.+ ...+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~---~~~---------------------------------~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG---GLV---------------------------------KGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCcccccccc---cCC---------------------------------CCCcCCEEEEEECC-EeEEc
Confidence 689999999999998764210 000 01289999999987 45799
Q ss_pred ccccCCCCCeeccEEEEEecC-CCceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEEE
Q 004061 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~-~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l 175 (776)
++++++.+|.|||+|.|.+.. +...|.|+|||++..++++||.+.+++.++..++..+.|++|... ..|+|+|
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 355699999999888889999999999999877778899999422 4799999
Q ss_pred EEEE
Q 004061 176 ELKF 179 (776)
Q Consensus 176 ~l~~ 179 (776)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 8864
No 41
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.62 E-value=9.8e-16 Score=175.39 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=118.8
Q ss_pred CeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHH
Q 004061 212 SHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELL 291 (776)
Q Consensus 212 n~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L 291 (776)
..++++.+| |+ ...+..+..++++|.+||++|+|++++|.|+ ..+.++|
T Consensus 329 ~~~q~~~sg--p~-------------~~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd----------------~~l~~aL 377 (509)
T PRK12452 329 GAVQIVASG--PS-------------SDDKSIRNTLLAVMGSAKKSIWIATPYFIPD----------------QETLTLL 377 (509)
T ss_pred eEEEEEeCC--CC-------------chhHHHHHHHHHHHHHhhhEEEEECCccCCC----------------HHHHHHH
Confidence 468888876 22 2225789999999999999999999988886 6899999
Q ss_pred HHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEE
Q 004061 292 KYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCV 371 (776)
Q Consensus 292 ~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~ 371 (776)
+.||+|||+||||+ ++.+... .+......+.+.|.++||+++.+... .+|+|++
T Consensus 378 ~~Aa~rGV~Vrii~-p~~~D~~--------~~~~a~~~~~~~L~~aGv~I~~y~~~-----------------~lHaK~~ 431 (509)
T PRK12452 378 RLSAISGIDVRILY-PGKSDSI--------ISDQASQSYFTPLLKAGASIYSYKDG-----------------FMHAKIV 431 (509)
T ss_pred HHHHHcCCEEEEEc-CCCCChH--------HHHHHHHHHHHHHHHcCCEEEEecCC-----------------CeeeeEE
Confidence 99999999999997 6643221 11112245567788899999865421 2899999
Q ss_pred EEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHH
Q 004061 372 LVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLIN 451 (776)
Q Consensus 372 VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~~~ 451 (776)
|||++ ++++||+|++. |... ..|-+..+...++.|.++++.
T Consensus 432 ivD~~--------~a~vGS~Nld~-RS~~------------------------------~n~E~~~~i~~~~~~~~l~~~ 472 (509)
T PRK12452 432 LVDDK--------IATIGTANMDV-RSFE------------------------------LNYEIISVLYESETVHDIKRD 472 (509)
T ss_pred EECCC--------EEEEeCcccCH-hHhh------------------------------hhhhccEEEECHHHHHHHHHH
Confidence 99999 99999999988 4311 245577777888899999999
Q ss_pred HHHHhhhcc
Q 004061 452 FEQRWRKAT 460 (776)
Q Consensus 452 F~~~W~~~~ 460 (776)
|.++|..+.
T Consensus 473 f~~d~~~s~ 481 (509)
T PRK12452 473 FEDDFKHST 481 (509)
T ss_pred HHHHHHhCe
Confidence 999998754
No 42
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=3.1e-15 Score=139.17 Aligned_cols=106 Identities=25% Similarity=0.486 Sum_probs=91.1
Q ss_pred eeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC
Q 004061 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (776)
Q Consensus 11 ~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (776)
.+.|-.|.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 7 ~l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~ 43 (122)
T cd08381 7 SISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLP 43 (122)
T ss_pred EEEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEee
Confidence 35666899999999999999887 544 89999999952
Q ss_pred ----eeeeeeccccCCCCCeeccEEEEEe-cC---CCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 91 ----ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 ----~~~~~T~~~~~~~~P~w~e~f~~~~-~~---~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
....||++++++.||.|||+|.|++ +. ....|+|+|||++.++ +++||.+.++|.++..++....||+|
T Consensus 44 ~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 44 DPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3356999999999999999999997 32 3456999999999987 89999999999999987778899987
No 43
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.62 E-value=2.5e-15 Score=137.00 Aligned_cols=100 Identities=18% Similarity=0.335 Sum_probs=84.5
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---e
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~ 91 (776)
..|.|+|+|++|++|+ . .+. +||||+|.+.. .
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~~~~k~ 46 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVSVSEGQ 46 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEcCCcCc
Confidence 4688999999999998 2 232 89999999943 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
...+|+++++|.||+|||+|.|.++.. ..+|.|+|||+|+++ +++||.+.++++++..+...+.|.+|
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 456999999999999999999998874 445999999999998 99999999999998766667788654
No 44
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.61 E-value=3.4e-15 Score=164.90 Aligned_cols=143 Identities=19% Similarity=0.192 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHH-hcCCEEEEEEecCCCccCccccccCC
Q 004061 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTPG 321 (776)
Q Consensus 243 ~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa-~rGV~VriLv~D~~gs~~~~~~~~~~ 321 (776)
..++++++|.+||++|+|++|+|.|+.. .+. ....+..|.++|.+|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~---~d~---~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIR---EDD---KTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEe---eCC---CCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-------
Confidence 4689999999999999999999987521 110 0001258999999885 9999999997 87654321
Q ss_pred ccccCcHHHHhhhcCCCce----EEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcc
Q 004061 322 VMATHDEETKKFFKHSSVN----CVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (776)
Q Consensus 322 ~~~~~~~~~~~~l~~~gv~----v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r 397 (776)
......+.|.++|++ ++.+ .+.+|+|++|||++ +|++||+|+++.+
T Consensus 283 ----~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s 332 (369)
T PHA03003 283 ----YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTH 332 (369)
T ss_pred ----hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchh
Confidence 012466778888854 2211 11279999999999 9999999998844
Q ss_pred CCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcc
Q 004061 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (776)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~ 460 (776)
|.. ..+.++ ..+.|++|.+++..|.++|+...
T Consensus 333 ~~~------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~~ 364 (369)
T PHA03003 333 YLH------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSSY 364 (369)
T ss_pred hcc------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCcc
Confidence 421 122332 24679999999999999998643
No 45
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.61 E-value=1.1e-14 Score=137.99 Aligned_cols=115 Identities=23% Similarity=0.385 Sum_probs=96.1
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (776)
-|.|.|+|++|++|++++..+. +||||++.+.+.. .+
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~k 50 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HK 50 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-ee
Confidence 4899999999999998876654 8999999997654 79
Q ss_pred eccccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCCCC-CceeEEEEcccccccc-----CceeEEEEEccCCCCCCCC
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPK 168 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~-----~~~~~~w~~l~~~~~~~~~ 168 (776)
|++++++.||.|||+|.|.+..+. ..|.|+|||++.++ +++||.+.+++.++.. ......|.++ . + .
T Consensus 51 T~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-~--~---~ 124 (136)
T cd08375 51 TKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-H--E---V 124 (136)
T ss_pred ccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-c--c---c
Confidence 999999999999999999997654 45999999999887 8999999999999875 2334456655 1 1 4
Q ss_pred CCceEEEEEEE
Q 004061 169 PGASIQLELKF 179 (776)
Q Consensus 169 ~~g~i~l~l~~ 179 (776)
..|+|++++.|
T Consensus 125 ~~g~i~l~~~~ 135 (136)
T cd08375 125 PTGEVVVKLDL 135 (136)
T ss_pred cceeEEEEEEe
Confidence 67999999986
No 46
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.60 E-value=6.1e-15 Score=140.56 Aligned_cols=109 Identities=20% Similarity=0.396 Sum_probs=91.5
Q ss_pred eeeeceEEEEEEEEeecCCCCCC-CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (776)
+.|-.|.|.|+|++|+||++++. .+. +||||++++..
T Consensus 24 l~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp 61 (146)
T cd04028 24 LYDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLE 61 (146)
T ss_pred EEeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEEC
Confidence 36678999999999999987653 333 89999999932
Q ss_pred --e--eeeeeccccCCCCCeeccEEEEEecCCCceEEEEEE-EcCCCC-CceeEEEEccccccccCceeEEEEEccCC
Q 004061 91 --A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 91 --~--~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~-~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
. .+.||++++++.||+|||+|.|.+......|.|+|| +++.++ +++||.+.|+|+.+..+.....||+|...
T Consensus 62 ~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 62 GKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2 356999999999999999999999865667999999 577776 89999999999999877778899999543
No 47
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.60 E-value=9.1e-15 Score=136.34 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=97.2
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
.|+|+|++|++|+.++..+. +||||+|.+.+.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 38999999999998876554 8999999997754 6999
Q ss_pred cccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCC---CCCCCce
Q 004061 98 VLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~---~~~~~g~ 172 (776)
+++++.||.|||+|.|.+.... ..|.|+|||++.++ +++||.+.+++.++..+...+.|++|...... ..+..|.
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 9999999999999999988764 45999999999887 89999999999999876677899998532221 2346788
Q ss_pred EEEEE
Q 004061 173 IQLEL 177 (776)
Q Consensus 173 i~l~l 177 (776)
|.+++
T Consensus 118 l~~~~ 122 (123)
T cd04025 118 LRLKV 122 (123)
T ss_pred EEEEe
Confidence 88876
No 48
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.59 E-value=8.1e-15 Score=135.27 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=84.6
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC------e
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------A 91 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~ 91 (776)
.|+|+|++|++|+.++. +. +||||+|++.+ .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 38999999999987663 43 89999999832 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
.+.+|++++++.||+|||+|.|.+... ...|.|+|||++..+ +++||.+.+++.++..++....|++|
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L 110 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence 346899999999999999999999753 234999999999877 89999999999999988888999998
No 49
>PRK13912 nuclease NucT; Provisional
Probab=99.59 E-value=1.8e-14 Score=142.91 Aligned_cols=141 Identities=16% Similarity=0.254 Sum_probs=101.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
.+++..++++|++|+++|+|+.|.|.. ..|.++|.+|++|||+||||+ |+.++...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 467889999999999999999998753 589999999999999999997 98755321
Q ss_pred CccccCcHHHHhhhc-CCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCC
Q 004061 321 GVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~-~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d 399 (776)
......++. ..++++.......... ......+|+|++|||++ ++++||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 011122222 2456655432111100 01123589999999998 999999999984441
Q ss_pred CCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHhhhc
Q 004061 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWRKA 459 (776)
Q Consensus 400 ~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpa-v~~l~~~F~~~W~~~ 459 (776)
..+++.+.+..|. +.++.+.|.+.|...
T Consensus 146 --------------------------------~N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 --------------------------------NNYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred --------------------------------cCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 2346778888875 588999999999764
No 50
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=2.2e-14 Score=134.53 Aligned_cols=104 Identities=35% Similarity=0.581 Sum_probs=90.4
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEE
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~ 155 (776)
+||||+|.+.+.. .+|++++++.+|+|||+|.|.+..+ ...|.|+|||++..+ +++||.+.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998765 6999999999999999999999764 456999999999886 8999999999999998888889
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEEecCCCC
Q 004061 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (776)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~~~p~~~~~ 186 (776)
|++|....+.+ ..|+|.++++|.|...+.
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGAV 122 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCcc
Confidence 99997665543 469999999999986553
No 51
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.58 E-value=4e-14 Score=132.61 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=100.9
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (776)
++.|+|+|++|++|+..+..+. +||||++.+.+.. .+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 4689999999999998876655 8999999998765 69
Q ss_pred eccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCC-CCCCCCCceEE
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ 174 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~-~~~~~~~g~i~ 174 (776)
|++++++.+|.|||.|.|.+..+...|+|+|||++..++++||.+.+++.++.. ....|++|.... ....+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEE
Confidence 999999999999999999988877789999999998889999999999987653 344677873211 12235789999
Q ss_pred EEEEEEec
Q 004061 175 LELKFTPC 182 (776)
Q Consensus 175 l~l~~~p~ 182 (776)
+++.+.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99987764
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.57 E-value=9.8e-15 Score=135.14 Aligned_cols=105 Identities=18% Similarity=0.346 Sum_probs=89.0
Q ss_pred eeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (776)
+.+-++.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 7 ~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p~ 43 (119)
T cd08685 7 IEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSPD 43 (119)
T ss_pred EEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEeC
Confidence 4567899999999999999876 443 89999999943
Q ss_pred ---eeeeeeccccCCCCCeeccEEEEEecCCC--ceEEEEEEEcCCCC--CceeEEEEccccccccCceeEEEEEc
Q 004061 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 ---~~~~~T~~~~~~~~P~w~e~f~~~~~~~~--~~l~i~v~~~~~~~--~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
....||++++++.+|+|||+|.|.+.... ..|.|+||+.+... +++||.+.|++.++..++..++||.|
T Consensus 44 ~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 44 KEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 23569999999999999999999987642 45889999988764 68999999999999878778999975
No 53
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.56 E-value=2.6e-14 Score=133.48 Aligned_cols=103 Identities=33% Similarity=0.540 Sum_probs=89.9
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--ee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (776)
-.|.|.|+|++|++|+.++..+. +||||+|.+.+ ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998776554 89999999843 34
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
..+|++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.+++.++..+...+.|++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 67999999999999999999998763 346999999999987 89999999999999888889999997
No 54
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.56 E-value=2.1e-14 Score=134.08 Aligned_cols=102 Identities=26% Similarity=0.499 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEE--CCeee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV 93 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~~~ 93 (776)
.|.|.|+|++|++|+.++..+. +||||+|.+ .+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~ 52 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSNT 52 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCCc
Confidence 5789999999999998876554 899999999 33456
Q ss_pred eeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 94 ~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
.+|++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.++++++..++....|++|
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 7999999999999999999998764 346999999999887 89999999999999877788999997
No 55
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.55 E-value=2e-14 Score=131.33 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=86.3
Q ss_pred EEEEEEEeecCCCCCC-CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
|.|+|++|++|+.++. .+. +||||+|.+.+ ...||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence 6899999999998774 333 89999999987 557999
Q ss_pred cccCCCCCee-ccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccc---CceeEEEEEccC
Q 004061 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (776)
Q Consensus 98 ~~~~~~~P~w-~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l~~ 161 (776)
+++++.||.| ||+|.|.+..+ ...|.|+|||++.++ +++||.+.+++.++.. +..++.||+|++
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999998874 356999999999987 8999999999999985 445889999864
No 56
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.55 E-value=3.8e-14 Score=128.30 Aligned_cols=97 Identities=26% Similarity=0.493 Sum_probs=84.5
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (776)
|.|+|++|++|+..+..+. +||||+|.+++. ..+|++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence 7899999999998765443 899999999884 469999
Q ss_pred ccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCCCceeEEEEccccccccC--ceeEEEEEcc
Q 004061 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDII 160 (776)
Q Consensus 99 ~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~--~~~~~w~~l~ 160 (776)
++++.+|.|||+|.|.+..+ ...|.|+|||++. +++||++.+++.++... ...+.||+|.
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999999999999999885 4569999999887 88999999999998754 3688999993
No 57
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.54 E-value=1.1e-13 Score=129.67 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--eeeee
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~~~ 95 (776)
.|+|+|++|++|+..+..+. +||||+|.+.+ ....|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 57899999999998776554 89999999864 34579
Q ss_pred eccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCC-CceeEEEEcccccccc---CceeEEEEEccCCCCCCCCCC
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l~~~~~~~~~~~ 170 (776)
|++++++.+|.|||+|.|.+..+ ...|.|+|||++..+ +++||++.+++.++.. +...+.|++| . +.
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l-~-------~~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-D-------TQ 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-C-------CC
Confidence 99999999999999999999875 456999999999886 8999999999987643 3456789998 2 36
Q ss_pred ceEEEEEEEEec
Q 004061 171 ASIQLELKFTPC 182 (776)
Q Consensus 171 g~i~l~l~~~p~ 182 (776)
|++++.+.+.-.
T Consensus 112 g~i~l~~~~~~~ 123 (126)
T cd04043 112 GRLLLRVSMEGE 123 (126)
T ss_pred CeEEEEEEEeee
Confidence 889888887543
No 58
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.54 E-value=4e-14 Score=132.34 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=88.1
Q ss_pred eceEEEEEEEEeecCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004061 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (776)
-.|.|.|+|++|++|+..+.. +. +||||+|.+..
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyVkv~l~p~~~ 50 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKR------------------------------------------SNPYVKTYLLPDKS 50 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCC------------------------------------------CCcEEEEEEEcCCc
Confidence 467899999999999877642 32 89999999832
Q ss_pred -eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
....||++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++..+......+.|++|
T Consensus 51 ~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 51 RQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred cccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 2346999999999999999999998763 346999999999987 89999999999999988889999997
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.54 E-value=5.3e-14 Score=131.20 Aligned_cols=116 Identities=25% Similarity=0.380 Sum_probs=93.7
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (776)
|+|+|++|++|+.++..+. +||||+|.+++....||++
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~v 39 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTDV 39 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEccE
Confidence 7999999999998876654 8999999997666689999
Q ss_pred ccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC---CceeEEEEccccccccC-ceeEEEEEccCCCCC-CCCCCceE
Q 004061 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGS-PPKPGASI 173 (776)
Q Consensus 99 ~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~---~~~iG~~~i~l~~~~~~-~~~~~w~~l~~~~~~-~~~~~g~i 173 (776)
++++.||.|||+|.|.+.. ...|.|+|||++.++ +++||.+.+++.++... .....|+++...... .....|+|
T Consensus 40 ~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v 118 (123)
T cd08382 40 AKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKI 118 (123)
T ss_pred EcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEE
Confidence 9999999999999999976 567999999998875 47999999999998743 334679998433221 12347888
Q ss_pred EEEE
Q 004061 174 QLEL 177 (776)
Q Consensus 174 ~l~l 177 (776)
.+++
T Consensus 119 ~~~~ 122 (123)
T cd08382 119 VVSL 122 (123)
T ss_pred EEEe
Confidence 8775
No 60
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=5e-14 Score=130.72 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=92.6
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|.|+|++|++|+..+..+. +||||.|.+.+..+.+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 789999999999998876554 89999999987777899
Q ss_pred ccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCC
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (776)
++++++.+|.|||+|.|.+..+...|.|+|||++.++ +++||.+.+++.++..+ ..+.||.+++..
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999888778999999999987 88999999999999865 678999887553
No 61
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.54 E-value=3.6e-14 Score=132.72 Aligned_cols=102 Identities=23% Similarity=0.401 Sum_probs=86.9
Q ss_pred ceEEEEEEEEeecCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
.+.|.|+|++|+||++++.. +. +||||+|.+..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~ 51 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSN 51 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 35899999999999988753 33 89999999932
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
....||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..++....||+|
T Consensus 52 ~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 52 RGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred cccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 2346999999999999999999998653 346999999999887 89999999999999877777899987
No 62
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.53 E-value=9.2e-14 Score=130.34 Aligned_cols=114 Identities=25% Similarity=0.493 Sum_probs=94.1
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
.|+|+|++|++|+.++..+. +||||.|.+.+. ..+|+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence 58999999999998886654 899999999765 46999
Q ss_pred cccCCCCCeeccEEEEEecCCCceEEEEEEEcCCC------------CCceeEEEEccccccccCceeEEEEEccCCCCC
Q 004061 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~------------~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (776)
+++++.+|.|||+|.|.+..+...|.|+|||++.. .+++||.+.+++.++.. ....|++|. +.+.
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~-~~~~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLE-KRTD 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECc-cCCC
Confidence 99999999999999999877666799999998852 38999999999998763 356899994 4334
Q ss_pred CCCCCceEEEEE
Q 004061 166 PPKPGASIQLEL 177 (776)
Q Consensus 166 ~~~~~g~i~l~l 177 (776)
.....|+|+|++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 335689998864
No 63
>PRK13912 nuclease NucT; Provisional
Probab=99.53 E-value=1.7e-14 Score=142.99 Aligned_cols=141 Identities=19% Similarity=0.238 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcc
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (776)
..+...++++|++|+++|+|+. |+++. ..+..++.++.+ |||+|+||++...+...+
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa~--RGV~VrIlld~~~~~~~~--- 88 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAAK--RGVKISIIYDYESNHNND--- 88 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHHH--CCCEEEEEEeCccccCcc---
Confidence 4567899999999999999985 55531 245555666654 569999999964321100
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh-ccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEE
Q 004061 640 VQEILFWQSQTMQMMYSVVAQELRE-MQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (776)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~l~~~L~~-~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IV 718 (776)
. .. ...|.+ .++++ +.... ... .......++|+|+|||
T Consensus 89 -~-------~~--------~~~l~~~~~~~~--------~~~~~-------------~~~----~~~~~~~~~H~K~~vi 127 (177)
T PRK13912 89 -Q-------ST--------IGYLDKYPNIKV--------CLLKG-------------LKA----KNGKYYGIMHQKVAII 127 (177)
T ss_pred -h-------hH--------HHHHHhCCCceE--------EEecC-------------ccc----cCcccccccceeEEEE
Confidence 0 00 011111 12221 11000 000 0001134799999999
Q ss_pred eeeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 719 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 719 Dd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
|++++++||+||+.+|+. .|.|+++++.||+++- ++++++.++|++
T Consensus 128 D~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~~---------~~~~~F~~~~~~ 173 (177)
T PRK13912 128 DDKIVVLGSANWSKNAFE--NNYEVLLITDDTETIL---------KAKEYFQKMLGS 173 (177)
T ss_pred cCCEEEEeCCCCChhHhc--cCCceEEEECCHHHHH---------HHHHHHHHHHHh
Confidence 999999999999999999 4599999999987653 678888888864
No 64
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.52 E-value=4.8e-14 Score=131.15 Aligned_cols=102 Identities=24% Similarity=0.480 Sum_probs=85.6
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-----
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (776)
.+.|.|+|++|+||++++..+. +||||++.+-.
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~~ 50 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSST 50 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCCC
Confidence 4689999999999998764443 89999999832
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccc-CceeEEEEEc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWYDI 159 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~-~~~~~~w~~l 159 (776)
....||++++++.||+|||+|.|++... ...|.|+||+.+.++ +++||.+.|+|.++.. ++....||+|
T Consensus 51 ~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 51 SCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2367999999999999999999998763 456999999999987 8999999999999964 4457789875
No 65
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=7e-14 Score=134.04 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=68.6
Q ss_pred CCcEEEEEECCe----eeeeeccccCCCCCeeccEEEEEecC----------------CCceEEEEEEEcCCCC-CceeE
Q 004061 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (776)
Q Consensus 80 ~dpyv~v~~~~~----~~~~T~~~~~~~~P~w~e~f~~~~~~----------------~~~~l~i~v~~~~~~~-~~~iG 138 (776)
+||||+|.+.+. ...+|++++++.||+|||+|.|.+.. ....|.|.|||++..+ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 899999999652 34699999999999999999999851 1234899999999886 89999
Q ss_pred EEEccccccccC-ceeEEEEEcc
Q 004061 139 TAAIPAHTIATG-ELISRWYDII 160 (776)
Q Consensus 139 ~~~i~l~~~~~~-~~~~~w~~l~ 160 (776)
.+.|++..+..+ .....||+|.
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~ 121 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQ 121 (148)
T ss_pred EEEEecccccccCCcCcceeecC
Confidence 999999999876 5678999994
No 66
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.52 E-value=1.7e-13 Score=129.98 Aligned_cols=118 Identities=19% Similarity=0.356 Sum_probs=95.5
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
+|+|+|++|++|+.++..+. +||||+|.+.+.. .+|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 58999999999998886665 8999999997754 6999
Q ss_pred cccCCCCCeeccEEEEEecCC----------CceEEEEEEEcCCCC-CceeEEEEc-ccccccc---CceeEEEEEccCC
Q 004061 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIAT---GELISRWYDIIAP 162 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~----------~~~l~i~v~~~~~~~-~~~iG~~~i-~l~~~~~---~~~~~~w~~l~~~ 162 (776)
+++++.||.|||+|.|.+... ...|.|+|||++..+ +++||++.+ ++..+.. +.....|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999985321 135899999999987 899999987 4444442 45677999994 3
Q ss_pred CCCCCCCCceEEEEEEEEec
Q 004061 163 SGSPPKPGASIQLELKFTPC 182 (776)
Q Consensus 163 ~~~~~~~~g~i~l~l~~~p~ 182 (776)
.+ ...|+|++++.+.+.
T Consensus 118 ~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 118 GG---QSAGELLAAFELIEV 134 (135)
T ss_pred CC---CchhheeEEeEEEEe
Confidence 33 368999999999875
No 67
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.52 E-value=1.5e-13 Score=126.71 Aligned_cols=96 Identities=26% Similarity=0.497 Sum_probs=75.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEE
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~ 155 (776)
+||||.|.+.+...++|+++++ .+|.|||+|.|.+... ...|.|.+|+.+... +..+|.+.| ..+..+...+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l--~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVAL--SKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEe--cCcCCCCccee
Confidence 8999999998877789999999 9999999999999874 345888889887664 566776555 44444667889
Q ss_pred EEEccCCCCCCCCCCceEEEEEEE
Q 004061 156 WYDIIAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~~ 179 (776)
|++|....+. ....|+|+++++|
T Consensus 95 w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred EEECccCCCC-CCcCceEEEEEEC
Confidence 9999543332 2568999999986
No 68
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.52 E-value=5e-14 Score=132.08 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=86.1
Q ss_pred ceEEEEEEEEeecCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
.+.|.|+|++|+||+.++.. +. +||||++.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~~ 51 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKSH 51 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 47899999999999987753 43 89999999832
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccc---CceeEEEEEc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l 159 (776)
....||++++++.||+|||+|.|.+... ...|.+.|||.+.++ +++||.+.|+|.++.. ++....||+|
T Consensus 52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 2356999999999999999999998663 356999999999887 8999999999999864 3467799987
No 69
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.52 E-value=9.7e-14 Score=127.85 Aligned_cols=97 Identities=21% Similarity=0.333 Sum_probs=84.1
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
+.|.|+|++|++|+.++ . .||||+|.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~------------------------------------------~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K------------------------------------------FNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C------------------------------------------CCCeEEEEECCEE-eEe
Confidence 68999999999997543 1 6899999998755 699
Q ss_pred ccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccccCcee--EEEEEcc
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~--~~w~~l~ 160 (776)
++.++ .||.|||.|.|.+....+.|.|+|||++.++|++||.+.|+|+++..++.. ..||+|.
T Consensus 36 ~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 99988 499999999999988877799999999988899999999999998865444 6899984
No 70
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.52 E-value=6.4e-14 Score=130.98 Aligned_cols=113 Identities=26% Similarity=0.437 Sum_probs=93.8
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
+|+|+|++|++|+..+..+. +||||+|.+.+....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 48999999999998775544 899999999874456999
Q ss_pred ccc-CCCCCeeccEEEEEecCC-----CceEEEEEEEcCCCC-CceeEEEEccccccccCce-----eEEEEEccCCCCC
Q 004061 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (776)
Q Consensus 98 ~~~-~~~~P~w~e~f~~~~~~~-----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~-----~~~w~~l~~~~~~ 165 (776)
+.. ++.+|.|||.|.|.+..+ ...|.|+|||++.++ +++||.+.+++.++..+.. ...||+|..+.|
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g- 117 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG- 117 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-
Confidence 875 589999999999999887 466999999999866 8999999999999885443 368999977665
Q ss_pred CCCCCceEEE
Q 004061 166 PPKPGASIQL 175 (776)
Q Consensus 166 ~~~~~g~i~l 175 (776)
+..|.|.+
T Consensus 118 --~~~G~~~~ 125 (125)
T cd04051 118 --KPQGVLNF 125 (125)
T ss_pred --CcCeEEeC
Confidence 45788764
No 71
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.51 E-value=2.1e-13 Score=130.99 Aligned_cols=99 Identities=19% Similarity=0.391 Sum_probs=82.7
Q ss_pred CCcEEEEEE----CCeeeeeeccccCCCCCeeccEEEEEecCC---------CceEEEEEEEcCCC--CCceeEEEEccc
Q 004061 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF--GAQIIGTAAIPA 144 (776)
Q Consensus 80 ~dpyv~v~~----~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~---------~~~l~i~v~~~~~~--~~~~iG~~~i~l 144 (776)
+||||++++ ......||+++++|.||+|||+|.|.+... ...|.|+|||.+.+ +|++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 334567999999999999999999999765 24599999999886 399999999999
Q ss_pred cccccCceeEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004061 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (776)
Q Consensus 145 ~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p 181 (776)
..+........|++|+.. .+ ..+|+|.++++...
T Consensus 105 ~~l~~~~~~~~~~~L~~~-~k--~~Gg~l~v~ir~r~ 138 (155)
T cd08690 105 EPLETKCEIHESVDLMDG-RK--ATGGKLEVKVRLRE 138 (155)
T ss_pred ccccccCcceEEEEhhhC-CC--CcCCEEEEEEEecC
Confidence 999877778889998643 22 36899999998644
No 72
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.51 E-value=6.1e-14 Score=128.34 Aligned_cols=98 Identities=28% Similarity=0.474 Sum_probs=83.9
Q ss_pred eEEEEEEEEeecCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--eee
Q 004061 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~ 93 (776)
|.|+|+|++|++|+.++.. +. +||||+|.+.. ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 7899999999999988765 44 89999999843 345
Q ss_pred eeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 94 ~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
.+|++++++.||+|||+|.|.+..+ ...|.++|||++.++ +++||.+.+++.++.. -.+|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 7999999999999999999987664 356999999999987 8999999999999873 3468776
No 73
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.50 E-value=9.5e-14 Score=126.23 Aligned_cols=95 Identities=21% Similarity=0.372 Sum_probs=79.3
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|.|+|++|++|+..+..++ ....+||||+|.+++. +.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~-~~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRR-VFRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCE-eEee
Confidence 789999999999998764321 0012799999999764 4699
Q ss_pred ccccCCCCCeeccEEEEEecCCC--ceEEEEEEEcCCCC-CceeEEEEccccccccC
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG 150 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~--~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~ 150 (776)
++++++.||+|||.|.|.+.+.. ..|.|+|||++.++ +++||++.++|.++..+
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence 99999999999999999987643 35999999999987 89999999999999865
No 74
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.50 E-value=1.1e-13 Score=129.33 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=84.2
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (776)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 3789999999999998876554 89999999954 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecC----CCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~----~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
.+.||++++++.+|+|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.+.. .+....||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 45699999999999999999998644 2356999999999887 899999999999843 2334689987
No 75
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.50 E-value=1.1e-13 Score=129.73 Aligned_cols=101 Identities=27% Similarity=0.537 Sum_probs=87.4
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----ee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~ 92 (776)
+.|.|+|++|++|+.++..+. +||||+|.+.. ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST 53 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence 789999999999998876554 89999999842 34
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCC--C-CceeEEEEccccccccCceeEEEEEc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~--~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
..||++++++.||.|||+|.|.+... ...|.+.||+.+.+ + +++||.+.+++.++..++...+||+|
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 57999999999999999999998653 34699999999875 4 89999999999999877788899987
No 76
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=7.2e-14 Score=134.23 Aligned_cols=111 Identities=31% Similarity=0.397 Sum_probs=82.8
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (776)
.|+|+|++|++|+.++..+. .+.+. ..++.. ...+||||+|.+.+.. .||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~--~~~~~~------------------------~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK--AFLGEK------------------------KELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee--ccccCC------------------------CCCcCcEEEEEECCEe-eecc
Confidence 37899999999999885431 00000 111111 1128999999999876 4999
Q ss_pred cccCCCCCeeccEEEEEecCC--CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEE
Q 004061 98 VLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (776)
Q Consensus 98 ~~~~~~~P~w~e~f~~~~~~~--~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~ 158 (776)
+++++.||+|||+|.|++..+ ...|.|+|||++..+ +++||++.+++.++... ..++|+|
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~-~~~~~lp 114 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS-GDEGFLP 114 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC-CccccCC
Confidence 999999999999999997543 456999999999985 99999999999998753 3433433
No 77
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.50 E-value=1.1e-13 Score=128.97 Aligned_cols=103 Identities=29% Similarity=0.521 Sum_probs=87.3
Q ss_pred eceEEEEEEEEeecCCCCC-CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004061 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (776)
-.|.|.|+|++|++|+.++ ..+. +||||+|.+..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~ 49 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS 49 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence 4588999999999999876 3333 89999999832
Q ss_pred -eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
....+|++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+...+.||+|
T Consensus 50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 1457999999999999999999998763 346999999999887 89999999999999877778899986
No 78
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2.7e-13 Score=124.75 Aligned_cols=100 Identities=29% Similarity=0.487 Sum_probs=88.4
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (776)
|+|+|++|++|+..+..+. +||||+|.+.+...++|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998775544 8999999998766689999
Q ss_pred ccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEcc
Q 004061 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (776)
Q Consensus 99 ~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (776)
+.++.+|.|||+|.|.+... ...+.|+|||++..+ +++||.+.+++.++..+.....|++|.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~ 102 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLD 102 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECc
Confidence 99999999999999998764 456999999999886 899999999999998888889999994
No 79
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.48 E-value=3.1e-13 Score=126.88 Aligned_cols=102 Identities=27% Similarity=0.396 Sum_probs=84.4
Q ss_pred ceEEEEEEEEeecCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--ee
Q 004061 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (776)
.+.|.|+|++|++|+.++.. +. +||||+|.+.. ..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~~ 52 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKEH 52 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcCc
Confidence 46899999999999987754 33 89999999842 34
Q ss_pred eeeeccccCCCCCeeccEEEEE-ecC---CCceEEEEEEEcCCCC-CceeEEEEccccccccC--ceeEEEEEc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~-~~~---~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~--~~~~~w~~l 159 (776)
..||++++++.||+|||+|.|. +.. ....|+++|||++.++ +++||.+.++|.++..+ +....|.++
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 5699999999999999999994 432 2345999999999887 89999999999998644 678899987
No 80
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=3.2e-13 Score=123.54 Aligned_cols=99 Identities=20% Similarity=0.383 Sum_probs=85.1
Q ss_pred cCCCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCCCCCceeEEEEcccccccc-CceeEE
Q 004061 78 ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELISR 155 (776)
Q Consensus 78 ~~~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~-~~~~~~ 155 (776)
..+||||.|.+++....+|++++++.||.|||+|.|.+.++. ..|+|.|||++.+++++||.+.++|.++.. +...+.
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~ 90 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQ 90 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccce
Confidence 448999999998877789999999999999999999998754 459999999998889999999999999853 445679
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEEec
Q 004061 156 WYDIIAPSGSPPKPGASIQLELKFTPC 182 (776)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~~~p~ 182 (776)
||+|.+ ...|+|++++.|.|+
T Consensus 91 w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 91 WFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred eEECCC------CCCCEEEEEEEEecC
Confidence 999842 257999999999985
No 81
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.47 E-value=2.6e-13 Score=126.72 Aligned_cols=100 Identities=26% Similarity=0.515 Sum_probs=88.0
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|+|+|++|++|++++..+. +||||.|.+.+.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 789999999999998776554 8999999997754 588
Q ss_pred ccccC-CCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 97 ~~~~~-~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
++.++ +.+|.|||+|.|.+..+ ...|.|+|||.+.++ +++||.+.+++.++..++..+.|++|
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 88875 89999999999999887 456999999999886 89999999999999877778899998
No 82
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.47 E-value=3e-13 Score=126.37 Aligned_cols=102 Identities=30% Similarity=0.473 Sum_probs=87.1
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Ceee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV 93 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~~ 93 (776)
.+.|.|+|++|++|+.++..+. +||||+|.+. +...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 5689999999999998775554 8999999983 3345
Q ss_pred eeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 94 ~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
.+|++++++.+|.|||+|.|...+. ...|.++|||++.++ +++||.+.+++.++..+.....|++|
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 7999999999999999999974332 245999999999887 89999999999999988889999987
No 83
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.47 E-value=1.6e-13 Score=157.07 Aligned_cols=138 Identities=19% Similarity=0.136 Sum_probs=107.7
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
+.....++++|.+||++|+|++.+|.|+ ..+.++|+.||+|||+||||+ +......
T Consensus 317 ~~~~~~~~~~I~~A~~~I~I~tpYfip~----------------~~i~~aL~~Aa~rGV~Vril~-p~~~d~~------- 372 (483)
T PRK01642 317 ETIHQFLLTAIYSARERLWITTPYFVPD----------------EDLLAALKTAALRGVDVRIII-PSKNDSL------- 372 (483)
T ss_pred hHHHHHHHHHHHHhccEEEEEcCCcCCC----------------HHHHHHHHHHHHcCCEEEEEe-CCCCCcH-------
Confidence 5577889999999999999999888775 789999999999999999998 6543221
Q ss_pred CccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCC
Q 004061 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (776)
........+.+.|.++||+++.+... ..|.|++|||++ ++++||.|++...+
T Consensus 373 -~~~~~~~~~~~~L~~~Gv~I~~y~~~-----------------~~HaK~~ivD~~--------~~~vGS~N~d~rS~-- 424 (483)
T PRK01642 373 -LVFWASRAFFTELLEAGVKIYRYEGG-----------------LLHTKSVLVDDE--------LALVGTVNLDMRSF-- 424 (483)
T ss_pred -HHHHHHHHHHHHHHHcCCEEEEeCCC-----------------ceEeEEEEECCC--------EEEeeCCcCCHhHH--
Confidence 11112234566778899999865321 279999999999 99999999987322
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHhhhcc
Q 004061 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (776)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~~W~~~~ 460 (776)
...+++.+.+.++ .+.++.+.|.++|..+.
T Consensus 425 ------------------------------~~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 425 ------------------------------WLNFEITLVIDDTGFAADLAAMQEDYFARSR 455 (483)
T ss_pred ------------------------------hhhhcceEEEECHHHHHHHHHHHHHHHHhCe
Confidence 1234788889988 46889999999998754
No 84
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.47 E-value=1.1e-13 Score=129.43 Aligned_cols=109 Identities=20% Similarity=0.353 Sum_probs=86.6
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-- 90 (776)
-.|.|.|+|++|+||++++.... .||||+|++- +
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~------------------------------------------~dpYVKV~L~~~~k~ 49 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLT------------------------------------------LSFFVKVGMFSTGGL 49 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCC------------------------------------------CCcEEEEEEEECCCc
Confidence 46889999999999998643222 7999999983 2
Q ss_pred eeeeeeccccCCC-CCeeccEEEEEecCCCce--EEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPLSN--LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 91 ~~~~~T~~~~~~~-~P~w~e~f~~~~~~~~~~--l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
..+.||++++++. +|+|||+|.|.++.+... |.|+|||++..+ +++||.+.++.+.. .++..++|.+++...+++
T Consensus 50 ~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKV 128 (135)
T ss_pred ceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCe
Confidence 3456999999995 699999999999876433 888999999886 89999999998764 355678999987655544
No 85
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.46 E-value=7.8e-14 Score=132.00 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=89.6
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..|.|.|+|++|+||+.++.... ..+||||+|.+..
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k 52 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAK 52 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCcc
Confidence 46889999999999998873210 0179999999843
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
..+.||++++++.||+|||+|.|.++.. ...|.|+|||++.++ +++||.+.+++.. .|+..++|..++...+++
T Consensus 53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCc
Confidence 2345999999999999999999998874 345999999999998 8999999999874 566788999987665554
No 86
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.46 E-value=4.1e-13 Score=125.06 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=87.5
Q ss_pred ceEEEEEEEEeecCCCCC-CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004061 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (776)
.+.|.|+|++|++|+.++ ..+. +||||+|.+. +..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~ 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence 567999999999999876 3433 8999999983 334
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
..+|++++++.+|+|||+|.|.+... ...|.|.|||.+..+ +++||.+.++|.++........|++|
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 57999999999999999999998763 346999999999887 89999999999999987778899998
No 87
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.45 E-value=1.2e-13 Score=130.79 Aligned_cols=107 Identities=23% Similarity=0.386 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e--
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~-- 91 (776)
.+.|.|+|++|++|+.++..+. +||||+|.+.. .
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~~ 51 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRKI 51 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCccc
Confidence 5689999999999998775544 89999999832 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
...||++++++.||+|||+|.|.++.. ...|+|+|||++.++ +++||.+.|... ..|+..++|..++...+++
T Consensus 52 ~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 52 SKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred cccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 245899999999999999999998763 456999999999887 899999999765 3466678899987665544
No 88
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.45 E-value=5.1e-13 Score=124.74 Aligned_cols=100 Identities=22% Similarity=0.389 Sum_probs=85.5
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Ceeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATVA 94 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~~~ 94 (776)
+.|.|+|++|+||++++..+. +||||.+.+. .....
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~~ 53 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQRA 53 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCccee
Confidence 789999999999998875443 7999998873 23456
Q ss_pred eeccccCCCCCeeccEEEEE-ecC---CCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 95 RTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 95 ~T~~~~~~~~P~w~e~f~~~-~~~---~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
||+++++ .||+|||+|.|+ +.. ....|.++||+++.++ +++||.+.|+|.++..++....|++|
T Consensus 54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999988 999999999998 554 2456999999999887 89999999999999888888999998
No 89
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.45 E-value=2.7e-13 Score=134.35 Aligned_cols=146 Identities=24% Similarity=0.372 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~ 638 (776)
...+...++++|.+|+++|+|+++||.+... .. ...+...|.+++++ ||+|+||++.......
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~~---~~---------~~~l~~~L~~a~~r--Gv~V~il~~~~~~~~~--- 81 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLIT---EY---------GPVILDALLAAARR--GVKVRILVDEWSNTDL--- 81 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEeccccc---cc---------chHHHHHHHHHHHC--CCEEEEEEcccccCCc---
Confidence 3578899999999999999999999984210 00 12455666666654 5999999996432110
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhc---cCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeee
Q 004061 639 TVQEILFWQSQTMQMMYSVVAQELREM---QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 715 (776)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~l~~~L~~~---Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~ 715 (776)
..... ....|.+. |+++ +.+.... .....+|+|+
T Consensus 82 -------~~~~~-------~~~~l~~~~~~~i~~--------~~~~~~~---------------------~~~~~~H~K~ 118 (176)
T cd00138 82 -------KISSA-------YLDSLRALLDIGVRV--------FLIRTDK---------------------TYGGVLHTKL 118 (176)
T ss_pred -------hHHHH-------HHHHHHHhhcCceEE--------EEEcCCc---------------------ccccceeeeE
Confidence 00111 13344443 4433 2221100 0125899999
Q ss_pred EEEeeeEEEEccccccCcCCCCCCcccceeeeeCCC-cchhcccCCCCchhHHHHHhhhcc
Q 004061 716 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH-HTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 716 ~IVDd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~-~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
||||++.+++||+||+.+|+. .|.|+++++++|+ ++ .++..++.++|..
T Consensus 119 ~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~~~~---------~~~~~~f~~~w~~ 168 (176)
T cd00138 119 VIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPASLA---------ADLKASLERDWNS 168 (176)
T ss_pred EEEcCCEEEEECCcCChhhhh--hhcceEEEEeChHHHH---------HHHHHHHHHHHhc
Confidence 999999999999999999998 5599999999986 43 3677788888863
No 90
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.44 E-value=1.3e-13 Score=130.33 Aligned_cols=108 Identities=29% Similarity=0.434 Sum_probs=89.7
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
-.|.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~ 48 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK 48 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 35899999999999998876554 89999999842
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
..+.+|++++++.+|.|||+|.|.+..+ ...|.|+|||++..+ +++||.+.+++.. .++..+.|++++...+++
T Consensus 49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 2457999999999999999999998764 346999999999887 8999999999975 455678999997665544
No 91
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.44 E-value=6.7e-13 Score=121.40 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=70.0
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCC-----ceEEEEEEEcCCCC-CceeEEEEccccccccC---
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~-----~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~--- 150 (776)
+||||+|.+.+.. .+|++++++.+|.|||+|.|.+..+. ..|+|+|||.+.++ +++||.+.++++++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999865 59999999999999999999976542 45999999999887 89999999999998644
Q ss_pred ceeEEEEEccC
Q 004061 151 ELISRWYDIIA 161 (776)
Q Consensus 151 ~~~~~w~~l~~ 161 (776)
.....|++|.+
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45788999854
No 92
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.43 E-value=4.7e-13 Score=130.72 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=84.8
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC----C
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~ 90 (776)
..|.|.|+|++|++|+..+..+. +||||+|.+. .
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 56899999999999998876554 8999999883 2
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
..+.||++++++.||.|||+|.|.+..+ ...|+|+|||++.++ +++||.+.+++.++........|+++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3467999999999999999999985432 245999999999987 89999999999998744445666655
No 93
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.43 E-value=1.9e-13 Score=129.75 Aligned_cols=108 Identities=27% Similarity=0.452 Sum_probs=89.0
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e-
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A- 91 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~- 91 (776)
-.+.|.|+|++|++|+.++..+. +||||+|.+.. .
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~ 50 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCce
Confidence 35789999999999998876654 89999999832 2
Q ss_pred -eeeeeccccCCCCCeeccEEEEEecC---CCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 92 -TVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 92 -~~~~T~~~~~~~~P~w~e~f~~~~~~---~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
...||++++++.||.|||+|.|.+.. ....|+|+|||++.++ +++||.+.+++.. .++....|+++....+++
T Consensus 51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 24689999999999999999999875 3345899999999987 8999999999988 356678899986655543
No 94
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.43 E-value=5.8e-13 Score=128.14 Aligned_cols=99 Identities=25% Similarity=0.460 Sum_probs=85.1
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe---
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--- 91 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~--- 91 (776)
..+.|.|+|++|++|++++..+. +||||.|.+...
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 63 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASRE 63 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEcccccc
Confidence 46789999999999999887665 899999998431
Q ss_pred -------------------------eeeeeccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCCCceeEEEEcccc
Q 004061 92 -------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAH 145 (776)
Q Consensus 92 -------------------------~~~~T~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~~~~iG~~~i~l~ 145 (776)
...+|++++++.+|.|||+|.|.+... ...|.|+|||++ +++||.+.+++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~ 140 (153)
T cd08676 64 RNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLK 140 (153)
T ss_pred cccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHH
Confidence 246899999999999999999999764 456999999987 899999999999
Q ss_pred ccccCceeEEEEEc
Q 004061 146 TIATGELISRWYDI 159 (776)
Q Consensus 146 ~~~~~~~~~~w~~l 159 (776)
++. +..++.||+|
T Consensus 141 ~l~-~~~~d~W~~L 153 (153)
T cd08676 141 DLP-SCGLDSWFKL 153 (153)
T ss_pred HhC-CCCCCCeEeC
Confidence 998 4457999986
No 95
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.1e-12 Score=146.45 Aligned_cols=130 Identities=26% Similarity=0.390 Sum_probs=106.2
Q ss_pred eeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e
Q 004061 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (776)
Q Consensus 14 ~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~ 91 (776)
+-+..|.|+|++|++|+.++..+. +||||++.+.. .
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~------------------------------------------sdpyVK~~llPdk~ 201 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGT------------------------------------------SDPYVKVYLLPDKK 201 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCC------------------------------------------CCCeeEEEEcCCCC
Confidence 345679999999999999883332 89999999943 4
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~ 167 (776)
...+|+++++++||+|||+|.|.+... ...|.++|||.|+|+ +++||.+.++|..+........|.++........
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~ 281 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSE 281 (421)
T ss_pred CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcc
Confidence 567999999999999999999997764 455999999999998 9999999999998887666788999954433222
Q ss_pred CCCceEEEEEEEEecCCC
Q 004061 168 KPGASIQLELKFTPCDKN 185 (776)
Q Consensus 168 ~~~g~i~l~l~~~p~~~~ 185 (776)
...|+|.++|+|.|.+..
T Consensus 282 ~~~gel~~sL~Y~p~~g~ 299 (421)
T KOG1028|consen 282 ELAGELLLSLCYLPTAGR 299 (421)
T ss_pred cccceEEEEEEeecCCCe
Confidence 334899999999998433
No 96
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.42 E-value=1.1e-12 Score=122.39 Aligned_cols=99 Identities=25% Similarity=0.340 Sum_probs=80.5
Q ss_pred CCCCceeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEE
Q 004061 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (776)
Q Consensus 6 ~~~~~~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~ 85 (776)
+.+......-.|.|+|+|++|++|+. +..+. +||||+
T Consensus 17 ~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVk 53 (127)
T cd04032 17 NSNCCPTRRGLATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVK 53 (127)
T ss_pred CCCcCcCcCCcEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEE
Confidence 33433334456899999999999973 44443 899999
Q ss_pred EEECCeeeeeeccccCCCCCeeccEEEEEecC--CCceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 86 v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~--~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
|.+.+. +.||++++++.+|+|||+|.|.... ....|+|+|||++.++ +++||.+.+++....
T Consensus 54 V~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 54 VFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 999876 5799999999999999999997433 3556999999999996 999999999998655
No 97
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.42 E-value=1.1e-12 Score=125.55 Aligned_cols=90 Identities=31% Similarity=0.652 Sum_probs=81.3
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (776)
|.|.|+|++|++|+..+. +. +||||.|.+++.. .+|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 889999999999987765 33 8999999998755 699
Q ss_pred ccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccC
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG 150 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~ 150 (776)
++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||.+.+++.++...
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 9999999999999999999988778999999999987 89999999999998754
No 98
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.42 E-value=1.2e-12 Score=123.40 Aligned_cols=110 Identities=26% Similarity=0.441 Sum_probs=92.6
Q ss_pred eeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC
Q 004061 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (776)
Q Consensus 11 ~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (776)
.+.|-.+.|.|+|++|++|+..+..+. .||||.|.+.+
T Consensus 7 ~~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~ 44 (131)
T cd04026 7 KISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIP 44 (131)
T ss_pred EEEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEc
Confidence 356777999999999999997765443 89999999953
Q ss_pred ----eeeeeeccccCCCCCeeccEEEEEecCC--CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCC
Q 004061 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (776)
Q Consensus 91 ----~~~~~T~~~~~~~~P~w~e~f~~~~~~~--~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (776)
...++|++++++.+|.|||+|.|.+... ...|.|+|||++..+ +++||.+.+++.++... ..+.||+|.+..
T Consensus 45 ~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 45 DPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 3567999999999999999999998764 345999999999876 89999999999999854 678999996553
No 99
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.41 E-value=5.1e-13 Score=124.75 Aligned_cols=126 Identities=21% Similarity=0.330 Sum_probs=79.9
Q ss_pred HHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhH
Q 004061 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILF 645 (776)
Q Consensus 566 ~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~ 645 (776)
+.++|.+|+++|+|++|||... .+...+..+.+ +|++|+|++..... +.... .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~--~gv~v~ii~~~~~~-~~~~~------~ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAK--RGVKVRIIVDSNQD-DSEAI------N 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHH--TT-EEEEEEECGGG-HHCCC------S
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHH--CCCeEEEEECCCcc-ccchh------h
Confidence 4689999999999999999531 22334444444 55999999995221 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEeeeEEEE
Q 004061 646 WQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIM 725 (776)
Q Consensus 646 ~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVDd~~~~I 725 (776)
. .....+.+.+...|+++ + ..+|+|++|+|++++++
T Consensus 54 ~------~~~~~~~~~~~~~~i~v--------~------------------------------~~~H~K~~i~d~~~~ii 89 (126)
T PF13091_consen 54 L------ASLKELRELLKNAGIEV--------R------------------------------NRLHAKFYIIDDKVAII 89 (126)
T ss_dssp H------HHHHHHHHHHHHTTHCE--------E------------------------------S-B--EEEEETTTEEEE
T ss_pred h------HHHHHHHhhhccceEEE--------e------------------------------cCCCcceEEecCccEEE
Confidence 0 01122345557777765 1 27899999999999999
Q ss_pred ccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhh
Q 004061 726 GSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASW 773 (776)
Q Consensus 726 GSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw 773 (776)
||+||+.+|+. .|.|+++.+.++++. ..+.+.+.++|
T Consensus 90 GS~N~t~~~~~--~n~E~~~~~~~~~~~---------~~~~~~F~~~W 126 (126)
T PF13091_consen 90 GSANLTSSSFR--RNYELGVIIDDPELV---------KELIREFDQMW 126 (126)
T ss_dssp ES--CSCCCSC--TSEEEEEEEECHHHH---------HHHHHHTHH-H
T ss_pred cCCCCCcchhc--CCcceEEEEECHHHH---------HHHHHHHhccC
Confidence 99999999998 559999999998544 25666667777
No 100
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.41 E-value=2.1e-13 Score=129.52 Aligned_cols=108 Identities=28% Similarity=0.491 Sum_probs=89.3
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Ce-
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA- 91 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~- 91 (776)
..|.|.|+|++|++|+.++..+. +||||+|.+. +.
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 50 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence 56889999999999998876554 8999999984 22
Q ss_pred -eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 92 -TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 92 -~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
...+|++++++.+|.|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++... ++..++|++++...+++
T Consensus 51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRP 128 (136)
T ss_pred cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCe
Confidence 3468999999999999999999987542 36999999999987 89999999999753 56678899997665544
No 101
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.41 E-value=3.5e-12 Score=119.55 Aligned_cols=116 Identities=29% Similarity=0.522 Sum_probs=93.8
Q ss_pred EEEEEEEEeecCCCCC--CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-----
Q 004061 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (776)
.|+|+|++|++|+.++ ..+. .||||++++.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------------------VDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------------------cCCEEEEEEEeCCCCC
Confidence 5899999999999766 2332 89999999942
Q ss_pred eeeeeeccccCCC-CCeeccEEEEEecCCC-ceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCC
Q 004061 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (776)
Q Consensus 91 ~~~~~T~~~~~~~-~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (776)
....+|++++++. +|.|||+|.|.+..+. ..|.++|||++..++++||.+.+++.++..| ..|++|....+.+ .
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-L 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-C
Confidence 3447999988765 9999999999988665 3499999999887889999999999999754 3688997776653 4
Q ss_pred CCceEEEEEEE
Q 004061 169 PGASIQLELKF 179 (776)
Q Consensus 169 ~~g~i~l~l~~ 179 (776)
..|.|.+++.+
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 56888888765
No 102
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.41 E-value=1.1e-12 Score=124.51 Aligned_cols=99 Identities=21% Similarity=0.420 Sum_probs=85.4
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---eeeee
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~~~ 95 (776)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+.+
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 57999999999877 4443 89999999973 45679
Q ss_pred eccccCCCCCeeccEEEEEecCC----------------CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEE
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~----------------~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~ 158 (776)
|++++++.+|.|||+|.|.+... ...|+|+|||.+..+ +++||.+.+++.++........|++
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999998775 235999999999985 8999999999999887667889999
Q ss_pred cc
Q 004061 159 II 160 (776)
Q Consensus 159 l~ 160 (776)
|.
T Consensus 118 L~ 119 (137)
T cd08675 118 LQ 119 (137)
T ss_pred cC
Confidence 84
No 103
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.41 E-value=3e-12 Score=119.73 Aligned_cols=97 Identities=24% Similarity=0.396 Sum_probs=77.4
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCce-----e
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----I 153 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~-----~ 153 (776)
+||||.|.+.+....+|++++++.+|.|||+|.|.+.. ...|.|+|||++..+ +++||.+.+++.++..... .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 89999999987656899999999999999999999864 457999999999986 8999999999999874221 3
Q ss_pred EEEEEccCCCCCCCCCCceEEEEE
Q 004061 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (776)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l 177 (776)
..|+++..+........|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 468888533310224578888775
No 104
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.40 E-value=1.9e-12 Score=120.91 Aligned_cols=124 Identities=20% Similarity=0.381 Sum_probs=87.8
Q ss_pred HHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCcc-CccccccCCcccc
Q 004061 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH-DKLGVKTPGVMAT 325 (776)
Q Consensus 247 l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~-~~~~~~~~~~~~~ 325 (776)
|.++|++|+++|+|++|.|.+ ..|.++|..++++||+|+|++ +..... ... ...
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~-------~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDSEAI-------NLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCC-------SHH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCccccchh-------hhH
Confidence 578999999999999998732 688999999999999999998 653210 000 000
Q ss_pred CcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCC
Q 004061 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (776)
Q Consensus 326 ~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~ 405 (776)
......+.+...|++++ . +.|.|++|||++ ++++||.|++...|
T Consensus 56 ~~~~~~~~~~~~~i~v~-----~----------------~~H~K~~i~d~~--------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR-----N----------------RLHAKFYIIDDK--------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHHHHTTHCEE-----S-----------------B--EEEEETTT--------EEEEES--CSCCCS-------
T ss_pred HHHHHHhhhccceEEEe-----c----------------CCCcceEEecCc--------cEEEcCCCCCcchh-------
Confidence 11234444577888876 1 379999999998 99999999999544
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHh
Q 004061 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (776)
Q Consensus 406 ~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpa-v~~l~~~F~~~W 456 (776)
...++..+.+.+|. +.++.+.|.+.|
T Consensus 100 -------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 24569999999996 899999999999
No 105
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.40 E-value=2.9e-13 Score=127.92 Aligned_cols=107 Identities=32% Similarity=0.544 Sum_probs=90.1
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe----
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA---- 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---- 91 (776)
.++|.|+|++|++|+..+..+. +||||++.+.+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 50 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL 50 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence 4789999999999998765443 899999998542
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
...+|++++++.+|.|||+|.|.+... ...|.|+|||.+..+ +++||.+.+++.+ .+...+.|++|+...+++
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 356999999999999999999998775 356999999999876 8999999999999 567788999997665544
No 106
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-13 Score=144.52 Aligned_cols=106 Identities=26% Similarity=0.447 Sum_probs=93.3
Q ss_pred eeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC----
Q 004061 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---- 89 (776)
Q Consensus 14 ~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---- 89 (776)
+-...|+|+|.+|+||-+||+.+. +||||.+.+.
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPK 214 (683)
T ss_pred ecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCc
Confidence 345679999999999999999887 9999999983
Q ss_pred CeeeeeeccccCCCCCeeccEEEEEecCCCc--eEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCC
Q 004061 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLS--NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~--~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
+..++||++++.++||+|||+|+|.+.+... .|.|+|||||+.+ ++++|+.++.+++|. .+..++||.|+..
T Consensus 215 ~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 215 NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ 289 (683)
T ss_pred chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence 3566799999999999999999999988753 4999999999998 999999999999998 4578899999754
No 107
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.39 E-value=6.1e-13 Score=126.00 Aligned_cols=108 Identities=33% Similarity=0.507 Sum_probs=88.8
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-- 90 (776)
..|.|+|+|++|++|+.++..+. +||||+|.+. +
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~~ 49 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGRR 49 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCcc
Confidence 46889999999999998886664 8999999983 2
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
....+|++++++.+|.|||+|.|.+.... ..|.|+|||++.++ +++||.+.+++. ..+...+.|++++...+++
T Consensus 50 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 50 LKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred cceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 23569999999999999999999976532 35999999999988 899999999887 3345567899998776654
No 108
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.39 E-value=6e-13 Score=126.36 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=88.6
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-- 90 (776)
..|.|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 45899999999999998775554 8999999982 2
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
....+|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.+. +...+.|++++...+.+
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 2346899999999999999999997642 346999999999987 89999999999876 55567899887665544
No 109
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.38 E-value=6.3e-12 Score=118.95 Aligned_cols=115 Identities=23% Similarity=0.394 Sum_probs=90.9
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-e-----
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-A----- 91 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~----- 91 (776)
.+.|++++|++|+ ++..++ +||||++.+.. .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~ 38 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFP 38 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCccccc
Confidence 3679999999998 666665 89999999943 1
Q ss_pred ------eeeeeccccCCCCCee-ccEEEEEecCCCceEEEEEEEcCCCC----CceeEEEEccccccccC---ceeEEEE
Q 004061 92 ------TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATG---ELISRWY 157 (776)
Q Consensus 92 ------~~~~T~~~~~~~~P~w-~e~f~~~~~~~~~~l~i~v~~~~~~~----~~~iG~~~i~l~~~~~~---~~~~~w~ 157 (776)
...+|++++++.||+| ||+|.|.+.. ...|+|+|||++..+ +++||.+.+++.++..+ .....|+
T Consensus 39 ~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~ 117 (137)
T cd08691 39 ALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSY 117 (137)
T ss_pred ccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEE
Confidence 2579999999999999 9999999864 457999999976432 69999999999998744 2366899
Q ss_pred EccCCCCCCCCCCceEEEEE
Q 004061 158 DIIAPSGSPPKPGASIQLEL 177 (776)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l 177 (776)
++ ...+......|+|.+.+
T Consensus 118 ~l-~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 118 TL-GRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EC-CcCCCCCcEEEEEEEEe
Confidence 98 45444455678888765
No 110
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.37 E-value=2.3e-12 Score=143.75 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=104.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
..+...++++|.+|+++|+|++.+|.|+ ..|.++|+.|++|||+|+||+ ++.+...
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~p~----------------~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~------- 260 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFFPG----------------YRLLRALRNAARRGVRVRLIL-QGEPDMP------- 260 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcCCC----------------HHHHHHHHHHHHCCCEEEEEe-CCCCCcH-------
Confidence 4567789999999999999999878774 789999999999999999998 6653322
Q ss_pred CccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCC
Q 004061 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (776)
++......+...|.++||+++.+... ..|.|++|||++ +++|||.|++. |...
T Consensus 261 -~~~~a~~~~~~~Ll~~Gv~I~~y~~~-----------------~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 261 -IVRVGARLLYNYLLKGGVQIYEYCRR-----------------PLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred -HHHHHHHHHHHHHHHCCCEEEEecCC-----------------CceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 11111234567788899999754321 279999999999 99999999988 4321
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHhh
Q 004061 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWR 457 (776)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpa-v~~l~~~F~~~W~ 457 (776)
...++.+.|.++. +.++.+.|.+++.
T Consensus 314 -------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 -------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred -------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 2236788888886 5889999999996
No 111
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.36 E-value=1.1e-12 Score=124.60 Aligned_cols=106 Identities=21% Similarity=0.430 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e--
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~-- 91 (776)
.+.|.|+|++|+||+..+ .+. +||||+|.+.. .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~ 50 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVV 50 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEe
Confidence 478999999999999877 443 89999999842 1
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (776)
...||++++++.||+|||+|.|.++.. ...|.|+||+.+..+ +++||.+.|+......++..++|..++...+
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~ 127 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPK 127 (137)
T ss_pred eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCC
Confidence 245899999999999999999998753 245999999999876 8999999999877777777889999875544
No 112
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.36 E-value=7.3e-13 Score=125.58 Aligned_cols=109 Identities=23% Similarity=0.423 Sum_probs=86.2
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEE-CC---
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV-PQ--- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~-~~--- 90 (776)
..|.|.|+|++|++|+.++..+. +||||+|.+ ++
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~ 49 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL 49 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 45899999999999998886654 899999997 32
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
....+|++++++.||+|||+|.|.+... ...|.|+|||++..+ +++||.+.|...... +...++|+.|+...+++
T Consensus 50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 1346999999999999999999998653 235999999999887 899999886543332 22467899987766654
No 113
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.35 E-value=3.6e-12 Score=120.56 Aligned_cols=90 Identities=30% Similarity=0.465 Sum_probs=78.6
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC------
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------ 90 (776)
+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 679999999999998776554 89999999852
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC-----CceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~-----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
....||++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|.++.
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 3467999999999999999999998763 346999999999988 899999999999887
No 114
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.35 E-value=1.1e-12 Score=124.68 Aligned_cols=107 Identities=19% Similarity=0.366 Sum_probs=86.0
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---e-
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A- 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~- 91 (776)
.+.|.|+|++|+||+.++..+. +||||+|.+.. .
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~~ 51 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQE 51 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCcc
Confidence 5889999999999998775543 89999999832 1
Q ss_pred -eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCC
Q 004061 92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (776)
Q Consensus 92 -~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (776)
...||++++++.||+|||+|.|+++.. ...|.|+||+.+.++ +++||.+.+++.... .+..++|+.++...+.
T Consensus 52 ~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~ 129 (138)
T cd08408 52 ISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQ 129 (138)
T ss_pred eeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCC
Confidence 245999999999999999999998753 346999999999887 899999999887543 2345688888665443
No 115
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.34 E-value=4.2e-12 Score=118.58 Aligned_cols=118 Identities=24% Similarity=0.335 Sum_probs=90.0
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee-eeee
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~~~T 96 (776)
.|+|+|++|++|+.++..+. +||||+|.+.+.. ..||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT 38 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRD 38 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeecccee
Confidence 37899999999998886655 8999999997753 3588
Q ss_pred ccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (776)
++++++.+|+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.+++.+... ...|..+..+...+ ..|.++
T Consensus 39 ~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~ 113 (124)
T cd04037 39 NYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQ 113 (124)
T ss_pred eEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCcee
Confidence 8899999999999999998655 345999999999986 8999999999987653 12344442222222 456777
Q ss_pred EEEEEEec
Q 004061 175 LELKFTPC 182 (776)
Q Consensus 175 l~l~~~p~ 182 (776)
+...+.|.
T Consensus 114 ~~~~~~~~ 121 (124)
T cd04037 114 WRDSLKPS 121 (124)
T ss_pred cCcccCcc
Confidence 76665553
No 116
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.32 E-value=4.1e-12 Score=160.05 Aligned_cols=122 Identities=22% Similarity=0.461 Sum_probs=103.9
Q ss_pred eeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (776)
++.+.|.|.|+|++|+||. +.++. +||||.+.+++.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~------------------------------------------sdPyv~l~~g~~ 2010 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGN------------------------------------------TNAFCKLTLGNG 2010 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCC------------------------------------------CCCeEEEEECCC
Confidence 5788999999999999997 33343 899999999965
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCC--ceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~--~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~ 169 (776)
...||++++++.||+|||+|+|.+..|. ..|.|+|||+|.++++.+|.+.|++.++..+..+.+||++. +.++ .
T Consensus 2011 ~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~---k 2086 (2102)
T PLN03200 2011 PPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLN-PESN---K 2086 (2102)
T ss_pred CcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecC-cccc---c
Confidence 4459999999999999999998877765 56999999999999889999999999999888999999995 3332 3
Q ss_pred Cce---EEEEEEEEe
Q 004061 170 GAS---IQLELKFTP 181 (776)
Q Consensus 170 ~g~---i~l~l~~~p 181 (776)
.|+ |++++.|.+
T Consensus 2087 ~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2087 DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCcceEEEEEEecC
Confidence 566 999998865
No 117
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.32 E-value=1.9e-11 Score=111.33 Aligned_cols=66 Identities=33% Similarity=0.531 Sum_probs=56.0
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEc-------CCCC-CceeEEEEccccc
Q 004061 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAHT 146 (776)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~-------~~~~-~~~iG~~~i~l~~ 146 (776)
+||||+++++. ..++||+++++|.||+|||+|.|.+.. ..+|.+.|||+ +..+ ++++|++.+.|..
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 79999999854 346899999999999999999999974 66899999998 3445 8999888887753
No 118
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.32 E-value=7.1e-12 Score=116.30 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.2
Q ss_pred CCcEEEEEECCe------eeeeeccccCCCCCeeccEEEEEecC-CCceEEEEEEEcCC----CC-CceeEEEEcccccc
Q 004061 80 SDPYVTVVVPQA------TVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (776)
Q Consensus 80 ~dpyv~v~~~~~------~~~~T~~~~~~~~P~w~e~f~~~~~~-~~~~l~i~v~~~~~----~~-~~~iG~~~i~l~~~ 147 (776)
+||||+|.+.+. .+.+|++++++.||+|||+|.|.+.. ....|.|+|||++. .+ +++||.+.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 899999999553 25799999999999999999998654 34459999999996 55 89999999999999
Q ss_pred ccCceeEEEEEc
Q 004061 148 ATGELISRWYDI 159 (776)
Q Consensus 148 ~~~~~~~~w~~l 159 (776)
..++....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 977777889988
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.31 E-value=4e-12 Score=141.79 Aligned_cols=132 Identities=25% Similarity=0.351 Sum_probs=115.4
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (776)
...|.|+|.+|+|||+.+..+. .||||+|.++++.+.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~R 41 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCR 41 (800)
T ss_pred ccceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhh
Confidence 3568999999999999887765 8999999999999999
Q ss_pred eccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEE
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~ 174 (776)
|.++.+++.|.|.|+|.|.++..+.-|.+-|||+| ++ |+.||++.|.-++|......+.|+.| .+.....+.+|+++
T Consensus 42 T~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v~ 119 (800)
T KOG2059|consen 42 TATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKVH 119 (800)
T ss_pred hhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeEE
Confidence 99999999999999999999999888999999999 66 99999999999999877789999998 45444446899999
Q ss_pred EEEEEEecCCCCccccc
Q 004061 175 LELKFTPCDKNPLYRQG 191 (776)
Q Consensus 175 l~l~~~p~~~~~~f~~g 191 (776)
|+|.+.+.....+..+.
T Consensus 120 l~l~~~e~~~~~~~~c~ 136 (800)
T KOG2059|consen 120 LELALTEAIQSSGLVCH 136 (800)
T ss_pred EEEEeccccCCCcchhh
Confidence 99999998766554444
No 120
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.30 E-value=1.9e-11 Score=113.89 Aligned_cols=100 Identities=29% Similarity=0.420 Sum_probs=82.2
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (776)
.+.|.|+|++|++|++.+..+. +||||++.+.+ .
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~ 51 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASKA 51 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCCC
Confidence 4689999999999998765444 89999999832 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEE
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWY 157 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~ 157 (776)
...+|++++++.+|.|||+|.|..... ...+.|+|||++.+++++||.+.+++.++..++..+.|+
T Consensus 52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 457999999999999999999963332 346999999998878899999999999998776665554
No 121
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.09 E-value=3.9e-10 Score=102.83 Aligned_cols=69 Identities=33% Similarity=0.556 Sum_probs=58.8
Q ss_pred CCcEEEEEECCe-----eeeeeccccCCCCCeeccEEEEEecC-----CCceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 80 ~dpyv~v~~~~~-----~~~~T~~~~~~~~P~w~e~f~~~~~~-----~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
+||||+|.+.+. ...+|++++++.+|+|| +|.|++.. ....|.|+|||++.++ +++||.+.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 899999998442 45799999999999999 78888542 2456999999999997 899999999999997
Q ss_pred c
Q 004061 149 T 149 (776)
Q Consensus 149 ~ 149 (776)
.
T Consensus 100 ~ 100 (110)
T cd04047 100 K 100 (110)
T ss_pred c
Confidence 3
No 122
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.08 E-value=2.9e-10 Score=97.72 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=69.3
Q ss_pred EEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe--eeeee
Q 004061 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (776)
Q Consensus 19 l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~--~~~~T 96 (776)
|+|+|++|++|+..+..+. .||||++.+.+. ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999998665444 899999999763 33799
Q ss_pred ccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCC-CceeEEEE
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA 141 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~-~~~iG~~~ 141 (776)
++++++.+|.|+|+|.|.+..+ ...|.|+|||.+..+ +++||.+.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9999999999999999996554 455999999999998 89999873
No 123
>PRK05443 polyphosphate kinase; Provisional
Probab=99.04 E-value=1e-09 Score=128.73 Aligned_cols=131 Identities=17% Similarity=0.108 Sum_probs=95.2
Q ss_pred HHHHHHHHhccc-----eEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004061 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (776)
Q Consensus 564 ~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~ 638 (776)
+.++++|++|.+ .|.|+-..+... -.+..++..|++ +||+|+|+++..+
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~Aa~--~Gk~V~vlve~ka------- 404 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEAAE--NGKQVTVLVELKA------- 404 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHHHH--cCCEEEEEEccCc-------
Confidence 578889999999 799985444321 134455556655 4599999999632
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEE
Q 004061 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (776)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IV 718 (776)
.+..+++.. ..+.|.++|++| +|.+ ...++|+|+++|
T Consensus 405 ---rfde~~n~~-------~~~~L~~aGv~V-------~y~~--------------------------~~~k~HaK~~li 441 (691)
T PRK05443 405 ---RFDEEANIR-------WARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 441 (691)
T ss_pred ---cccHHHHHH-------HHHHHHHcCCEE-------EEcc--------------------------CCccceeEEEEE
Confidence 122233443 278899999986 3533 135899999999
Q ss_pred eee-------EEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhc
Q 004061 719 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWH 774 (776)
Q Consensus 719 Dd~-------~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~ 774 (776)
|++ ++.|||+|+|.||+..+ +|+++++.|++++. .+.+++..||.
T Consensus 442 d~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~~---------d~~~~F~~l~~ 493 (691)
T PRK05443 442 VRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIGE---------DVTRLFNYLTG 493 (691)
T ss_pred EeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHHH---------HHHHHHHHHhC
Confidence 999 99999999999999955 99999999998764 45555555554
No 124
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.2e-10 Score=123.64 Aligned_cols=122 Identities=25% Similarity=0.487 Sum_probs=100.8
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
|...+++++++|.+|..+|-.++ +||||++.++..+ .
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r 329 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R 329 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence 66779999999999998887766 9999999998765 5
Q ss_pred eeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCC------------CCceeEEEEccccccccCceeEEEEEccCC
Q 004061 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 95 ~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~------------~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
||+++...+||+|||.|.|.+.+....|++.|||+|.. +|+++|...|.+-.+. | .++.||.| ..
T Consensus 330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynl-ek 406 (1283)
T KOG1011|consen 330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNL-EK 406 (1283)
T ss_pred hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcch-hh
Confidence 99999999999999999999999888899999998743 3799999999888776 3 47899998 44
Q ss_pred CCCCCCCCceEEEEEEEEec
Q 004061 163 SGSPPKPGASIQLELKFTPC 182 (776)
Q Consensus 163 ~~~~~~~~g~i~l~l~~~p~ 182 (776)
...++...|.|+|.+...-.
T Consensus 407 rtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 407 RTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred ccchhhccceEEEEEEEEEc
Confidence 44444567877776665444
No 125
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.03 E-value=2.8e-09 Score=114.20 Aligned_cols=163 Identities=17% Similarity=0.287 Sum_probs=107.5
Q ss_pred cCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCc
Q 004061 232 LDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS 311 (776)
Q Consensus 232 ~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs 311 (776)
...|+ ..-+++|++.|..|++.|+|....+.|......+ .+ - -.|.++|++||-|||+||+|+ ....-
T Consensus 270 ~~~gr----t~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~-----f-w~iDdaiR~aa~RgV~vR~lv-s~~~~ 337 (456)
T KOG3603|consen 270 NPSGR----TWDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HR-----F-WEIDDAIRRAAVRGVKVRLLV-SCWKH 337 (456)
T ss_pred CCCCC----chhHHHHHHHHHHHhhheeeeehhccchheeecC-cc-----h-hhhhHHHHHHhhcceEEEEEE-eccCC
Confidence 44555 4458899999999999999999888887655543 21 1 389999999999999999998 32211
Q ss_pred cCccccccCCcccc-Cc-HHHHhhhcCCCceEEec--cCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEE
Q 004061 312 HDKLGVKTPGVMAT-HD-EETKKFFKHSSVNCVLA--PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (776)
Q Consensus 312 ~~~~~~~~~~~~~~-~~-~~~~~~l~~~gv~v~~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~ 387 (776)
. ..++... +. ......+.+..|+|+++ |..... .....+++|.|+||-+. .||
T Consensus 338 -~-----~~~m~~~L~SLq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aay 394 (456)
T KOG3603|consen 338 -S-----EPSMFRFLRSLQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAY 394 (456)
T ss_pred -C-----CchHHHHHHHHHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------cee
Confidence 0 0000000 00 01112223456777654 322111 11234579999999998 899
Q ss_pred EccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEE-----eChHHHHHHHHHHHHhhhccc
Q 004061 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-----DGPAAYDVLINFEQRWRKATK 461 (776)
Q Consensus 388 vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i-----~Gpav~~l~~~F~~~W~~~~~ 461 (776)
+|..|++.+||...+ .+++.| .|+++.+|..+|..+|+....
T Consensus 395 IGTSNws~dYf~~Ta--------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 395 IGTSNWSGDYFTSTA--------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred eeccCCCccceeccC--------------------------------ceEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 999999998884321 233333 357899999999999987543
No 126
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.98 E-value=3e-09 Score=93.33 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=69.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecC-CCceEEEEEEEcCCCC-CceeEEEEccccccc-cCceeEEE
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~-~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~-~~~~~~~w 156 (776)
.+|||.+.+.....++|.+..++.+|.|+|.|.|.+.. ....+.|+||+.+..+ +.++|.+.+++.++. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 89999999987556799999999999999999999988 5566999999999887 899999999999988 55566678
Q ss_pred EEc
Q 004061 157 YDI 159 (776)
Q Consensus 157 ~~l 159 (776)
+++
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 764
No 127
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.94 E-value=5.1e-09 Score=92.32 Aligned_cols=72 Identities=43% Similarity=0.774 Sum_probs=63.9
Q ss_pred CCcEEEEEECCe--eeeeeccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCC-CceeEEEEccccccccCc
Q 004061 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (776)
Q Consensus 80 ~dpyv~v~~~~~--~~~~T~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~ 151 (776)
.+|||.+.+... ...+|+++.++.+|.|+|+|.|.+..+ ...|.|+||+.+..+ +.++|.+.+++.++..+.
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 799999999765 467999999999999999999999887 667999999998876 899999999999887553
No 128
>PLN02223 phosphoinositide phospholipase C
Probab=98.90 E-value=1.6e-08 Score=113.55 Aligned_cols=96 Identities=23% Similarity=0.430 Sum_probs=77.7
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCcee
Q 004061 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (776)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (776)
.||||+|.+.+ +...+|++..|+.||+|||+|.|++..|..- |+|+|+|+|... ++++|++.+|+..++.|-
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 79999999954 3345888888899999999999999887655 899999999876 899999999999999874
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004061 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (776)
++++|.+..|.+.. ..+|.+.+.|
T Consensus 513 -R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCC-CceEEEEEEe
Confidence 56788777777643 3455555544
No 129
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.89 E-value=6.2e-09 Score=118.49 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=101.5
Q ss_pred HHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccc
Q 004061 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA 324 (776)
Q Consensus 245 ~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~ 324 (776)
..++.+|.+|+++|+|++-+|.|+ ..+.++|..|+++||+|+||+ +..+.... ..+.
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~~~----------------~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~------~~~~ 329 (438)
T COG1502 273 RLLLKAINSARESILIATPYFVPD----------------RELLAALKAAARRGVDVRIII-PSLGANDS------AIVH 329 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcCCC----------------HHHHHHHHHHHhcCCEEEEEe-CCCCCCCh------HHHH
Confidence 679999999999999999667664 789999999999999999998 74322221 0111
Q ss_pred cCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCC
Q 004061 325 THDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404 (776)
Q Consensus 325 ~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~ 404 (776)
.......+.|.+.|++++.++.. ...|.|++|||++ +++|||.|++...+.
T Consensus 330 ~~~~~~~~~l~~~gv~i~~~~~g----------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~----- 380 (438)
T COG1502 330 AAYRAYLKELLEAGVKVYEYPGG----------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLR----- 380 (438)
T ss_pred HHHHHHHHHHHHhCCEEEEecCC----------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHH-----
Confidence 11234567777899998755430 1279999999999 999999999983221
Q ss_pred CccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHhhhcc
Q 004061 405 LFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (776)
Q Consensus 405 ~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~~W~~~~ 460 (776)
-..++.+.|+.+ .+.++...|...|....
T Consensus 381 ---------------------------lN~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 381 ---------------------------LNFEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred ---------------------------HhhhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 112678888888 67889999997776543
No 130
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=9.1e-09 Score=112.15 Aligned_cols=169 Identities=24% Similarity=0.438 Sum_probs=120.6
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
|.|.|.|+|..||+||-||..+. ..|.||+|.+.+.. .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 57899999999999999987664 27999999999876 6
Q ss_pred eeccccCCCCCeec-cEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEcccccccc----------CceeEEEEEc
Q 004061 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI 159 (776)
Q Consensus 95 ~T~~~~~~~~P~w~-e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~----------~~~~~~w~~l 159 (776)
||.+..+++||.|| +-|.|.+... .++|.|++.|+|..+ ++.||++.|++..+.. |-.+.+|+|+
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 5678888763 456999999999998 8999999999987642 3458899999
Q ss_pred cCCCCCCCCCCceEEEEEEEEecCCCCccccccCCCCCCCCCCCccCCCCCCCeeEEeecccccCCCCCceecCCCCccC
Q 004061 160 IAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239 (776)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~~~p~~~~~~f~~g~~~~~ef~~v~~t~~p~~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~ 239 (776)
.+.-- ..+|+|.+-++.--.....-|....-| ..|++.. ..|+ +.+.++++ |+..++++.+.++|.
T Consensus 119 fdtih---girgeinvivkvdlfndlnkf~qsscg-vkffctt--sip~--~yra~iih------gfveelvvnddpeyq 184 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQSSCG-VKFFCTT--SIPF--CYRAQIIH------GFVEELVVNDDPEYQ 184 (1169)
T ss_pred ceecc---cccceeEEEEEEeehhhhhhccccccc-ceeeecc--cCcc--ceeehhhh------hhhHHhccCCCcchh
Confidence 64422 257898887765443333333332222 3343332 1222 23333332 456667777777774
No 131
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.87 E-value=1e-08 Score=121.18 Aligned_cols=135 Identities=26% Similarity=0.425 Sum_probs=106.7
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
--|.|.|+|.+|++|...+..-. .+.|||+++.......+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~g 473 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIG 473 (1227)
T ss_pred eeEEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCC
Confidence 45899999999999987663221 12899999999887778
Q ss_pred eeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeE-EEEEccCCCCCCCCCCce
Q 004061 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS-RWYDIIAPSGSPPKPGAS 172 (776)
Q Consensus 95 ~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~-~w~~l~~~~~~~~~~~g~ 172 (776)
||++++++.||+|||+|.+.+..-.+.|.|+|||.+... |+++|++.++|..+....... .-+.++. ++ +..|+
T Consensus 474 kT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~-~~---k~vGr 549 (1227)
T COG5038 474 KTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR-NT---KNVGR 549 (1227)
T ss_pred ccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeec-cC---ccceE
Confidence 999999999999999999999988888999999966665 999999999999887433332 2444422 22 56899
Q ss_pred EEEEEEEEecCCCCccccccC
Q 004061 173 IQLELKFTPCDKNPLYRQGIA 193 (776)
Q Consensus 173 i~l~l~~~p~~~~~~f~~g~~ 193 (776)
|...++|+|...+..-..+..
T Consensus 550 L~yDl~ffp~~e~k~~~~~s~ 570 (1227)
T COG5038 550 LTYDLRFFPVIEDKKELKGSV 570 (1227)
T ss_pred EEEeeeeecccCCcccccccc
Confidence 999999999877766444433
No 132
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.4e-09 Score=119.85 Aligned_cols=107 Identities=33% Similarity=0.582 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--e
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--~ 91 (776)
+|.|+|.|++|++|+.++..+. .||||++.+- . .
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~~~~~ 334 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDGDKRL 334 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecCCcee
Confidence 5999999999999999887664 8999999982 2 3
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (776)
.+.||.+++++.||+|||+|.|.++.. ...+.|+|||++.++ +++||.+.+.... .+....+|.++++..+.+
T Consensus 335 ~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~p 411 (421)
T KOG1028|consen 335 SKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKP 411 (421)
T ss_pred eeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCc
Confidence 456999999999999999999988764 345999999999998 7899988887665 455577888887665544
No 133
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.82 E-value=9.1e-09 Score=121.59 Aligned_cols=122 Identities=25% Similarity=0.393 Sum_probs=97.8
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (776)
.|.|+|.+..|.||+..+..+. +||||.+.+.++..++
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vyk 1076 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVYK 1076 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceeccc
Confidence 6889999999999998887776 8999999999988999
Q ss_pred eccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCceE
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i 173 (776)
|+++++++||+|||+|.+++..- ...+.+.|+||+... ++.||++.++|+.+..+.....-.++ .... .....|.+
T Consensus 1077 tkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~ 1154 (1227)
T COG5038 1077 TKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTL 1154 (1227)
T ss_pred ccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEe
Confidence 99999999999999999999864 445999999999987 89999999999999876554444444 2222 12345555
Q ss_pred EEEEEEEe
Q 004061 174 QLELKFTP 181 (776)
Q Consensus 174 ~l~l~~~p 181 (776)
+..-.|.+
T Consensus 1155 ~~~~~~r~ 1162 (1227)
T COG5038 1155 HPGFNFRS 1162 (1227)
T ss_pred ecceecch
Confidence 55554444
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=98.82 E-value=3.6e-08 Score=113.03 Aligned_cols=94 Identities=23% Similarity=0.477 Sum_probs=76.3
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCcee
Q 004061 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (776)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (776)
.||||+|.+.+ +...+|++++++.||+|||+|.|++..|... ++|+|+|+|..+ ++++|++.+|+..|..|-
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999954 3456999999999999999999998877544 899999999887 899999999999999874
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004061 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (776)
+|++|.+..|.+. +...|.++|
T Consensus 575 -R~VpL~~~~G~~l---~~a~Llv~f 596 (599)
T PLN02952 575 -RSVPLHDKKGEKL---KNVRLLMRF 596 (599)
T ss_pred -eeEeCcCCCCCCC---CCEEEEEEE
Confidence 5899987777653 334444443
No 135
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.73 E-value=5.5e-08 Score=111.22 Aligned_cols=98 Identities=27% Similarity=0.512 Sum_probs=79.1
Q ss_pred CCcEEEEEECC----eeeeeec-cccCCCCCeeccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCce
Q 004061 80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (776)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~-~~~~~~~P~w~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~ 152 (776)
+||||.|++.+ +...+|+ +..|+-+|.|+|+|.|++..|... |++.|+|+|..+ |+|+|+.+||+..|..|-
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy- 719 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY- 719 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence 78999998854 4557999 666799999999999999998766 899999999998 999999999999999773
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004061 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (776)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~~~p 181 (776)
+-.+|.+..|.. -...+|-+.+++.+
T Consensus 720 --RhVpL~~~~G~~-~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 720 --RHVPLLSREGEA-LSSASLFVRIAIVE 745 (746)
T ss_pred --eeeeecCCCCcc-ccceeEEEEEEEec
Confidence 335676666655 34566777776653
No 136
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.72 E-value=5.2e-08 Score=91.27 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=61.5
Q ss_pred CCcEEEEEECC--eeeeeeccccCCCC--CeeccEEEEEecCC------------------------CceEEEEEEEcCC
Q 004061 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (776)
Q Consensus 80 ~dpyv~v~~~~--~~~~~T~~~~~~~~--P~w~e~f~~~~~~~------------------------~~~l~i~v~~~~~ 131 (776)
+||||++.+.+ ...++|.|..++.+ |.||+.|.|++..+ ...|.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999976 46689999999988 99999999987662 1348999999999
Q ss_pred CC-CceeEEEEccccccccC
Q 004061 132 FG-AQIIGTAAIPAHTIATG 150 (776)
Q Consensus 132 ~~-~~~iG~~~i~l~~~~~~ 150 (776)
++ ++++|.+.++|..+..+
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cCCCCcceEEEEEhhhcccc
Confidence 98 99999999999988754
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.71 E-value=1e-07 Score=109.25 Aligned_cols=96 Identities=22% Similarity=0.447 Sum_probs=77.9
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCcee
Q 004061 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (776)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (776)
.||||+|.+.+ +...+|++..++.||+|||+|.|++..|... |+|.|+|+|... ++++|+..||+..|+.|-
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 79999999943 3346899999999999999999998877644 899999999875 899999999999999873
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004061 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (776)
+..+|.+..|.+.. ..+|.+.+.|
T Consensus 574 -R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 574 -HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred -ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 45788777776643 3566666654
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.68 E-value=1.8e-07 Score=107.09 Aligned_cols=96 Identities=23% Similarity=0.475 Sum_probs=78.1
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeeccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCcee
Q 004061 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (776)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (776)
.||||+|.+.+ +...+|++++++.+|+|||+|.|++..|... |+|.|+|+|..+ ++++|++.+|+..|+.|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 79999999954 3456999999999999999999998877644 899999998876 899999999999999773
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004061 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (776)
+..+|.+..|.+.. ..+|.+.+.|
T Consensus 557 -R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 45788777777643 4566666654
No 139
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.68 E-value=1.3e-07 Score=106.67 Aligned_cols=142 Identities=15% Similarity=0.063 Sum_probs=94.9
Q ss_pred chHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCC
Q 004061 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (776)
Q Consensus 242 ~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~ 321 (776)
.....+..+|..|+++|+|++.+|.|+ ..+.++|..|++|||+|+||+ -+..+.++..-....
T Consensus 251 ~l~~~~~~li~~A~~~i~I~TPYF~p~----------------~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy~~~d~~ 313 (451)
T PRK09428 251 LLNKTIFHLMASAEQKLTICTPYFNLP----------------AILVRNIIRLLRRGKKVEIIV-GDKTANDFYIPPDEP 313 (451)
T ss_pred HHHHHHHHHHhccCcEEEEEeCCcCCC----------------HHHHHHHHHHHhcCCcEEEEc-CCcccccCcCCCccH
Confidence 456778999999999999999999985 789999999999999999998 544332211001111
Q ss_pred ccccCc-HHHHh-----------hhcCCC---ceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEE
Q 004061 322 VMATHD-EETKK-----------FFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA 386 (776)
Q Consensus 322 ~~~~~~-~~~~~-----------~l~~~g---v~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a 386 (776)
+..... ....+ .+.++| |++..++ .+..|.|.++||++ ++
T Consensus 314 ~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~~~-----------------~~~~HaK~i~vD~~--------~~ 368 (451)
T PRK09428 314 FKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWKDG-----------------DNSYHLKGIWVDDR--------WM 368 (451)
T ss_pred HHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEecC-----------------CCcceEEEEEEeCC--------EE
Confidence 100000 01111 123344 5555332 12379999999998 99
Q ss_pred EEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhh
Q 004061 387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRK 458 (776)
Q Consensus 387 ~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~ 458 (776)
++||.|+....|.- -.++.+.|..|. ..|.+.|.+....
T Consensus 369 ~iGS~Nld~RS~~l--------------------------------n~E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 369 LLTGNNLNPRAWRL--------------------------------DLENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred EEcCCCCChhHhhh--------------------------------cccceEEEECCh-HHHHHHHHHHHHH
Confidence 99999999843421 126778888887 7777788776643
No 140
>PLN02228 Phosphoinositide phospholipase C
Probab=98.67 E-value=2.2e-07 Score=106.13 Aligned_cols=99 Identities=20% Similarity=0.328 Sum_probs=81.0
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCee-ccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCce
Q 004061 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (776)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w-~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~ 152 (776)
.||||+|.+.+ ....+|++++++.+|+| +|+|.|++..|... |+|+|+|+|..+ ++++|++.||+..|+.|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 79999999844 34469999999999999 99999998877644 899999998776 899999999999999773
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004061 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (776)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~~~p~ 182 (776)
+..+|.+..|... ...+|.+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l-~~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAY-KNTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCC-CCeEEEEEEEEcCc
Confidence 4568878877764 35678888877653
No 141
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.58 E-value=4.1e-08 Score=66.16 Aligned_cols=26 Identities=54% Similarity=0.685 Sum_probs=24.6
Q ss_pred eEEeeeeEEEeeeEEEEccccccCcC
Q 004061 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (776)
Q Consensus 709 ~~lHsK~~IVDd~~~~IGSaNld~RS 734 (776)
.++|+|++|+|+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999987
No 142
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.56 E-value=2.3e-08 Score=66.61 Aligned_cols=25 Identities=60% Similarity=1.093 Sum_probs=17.1
Q ss_pred ecccceEEEEccCCCCCCcceEEEEccccCCCc
Q 004061 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (776)
Q Consensus 364 ~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~ 396 (776)
+++|+|++|||++ +||+||+|++++
T Consensus 3 ~~~H~K~~vvD~~--------~a~vGg~nl~~~ 27 (28)
T PF00614_consen 3 GSHHQKFVVVDDR--------VAFVGGANLCDG 27 (28)
T ss_dssp BEE---EEEETTT--------EEEEE---SSHH
T ss_pred cceeeEEEEEcCC--------EEEECceecCCC
Confidence 5799999999999 999999999873
No 143
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.54 E-value=3.7e-07 Score=80.58 Aligned_cols=65 Identities=29% Similarity=0.415 Sum_probs=56.1
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccc
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~ 148 (776)
+||||.|.+++..++||++ +.||.|||+|.|++.. ...++|+|||......-.||..-+.+++|.
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 7999999999987789987 4889999999999954 446999999987766778999999998876
No 144
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=98.42 E-value=7.4e-06 Score=87.10 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=75.7
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhc--CCEEEEEEecCC-CccCcccc
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVWDDK-TSHDKLGV 317 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~r--GV~VriLv~D~~-gs~~~~~~ 317 (776)
.++|+.+...|.+|+++|+|++-++-- ...++++-|..+... ..+|.||+ |.. |+...+..
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~---------------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGK---------------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccch---------------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 889999999999999999998765422 126888888888765 69999998 875 33332211
Q ss_pred ccCCccccCcHHHHhhhcCCCceEEeccC--CCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004061 318 KTPGVMATHDEETKKFFKHSSVNCVLAPR--YASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (776)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~v~~~~~--~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~ 395 (776)
.. +.....-.++.. ..|++.++.. ..+....+...++.-...-.|-|+.-+|+ -.++-|.|+++
T Consensus 102 ~s---~llp~~l~kkf~--e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdd---------eviiSGanls~ 167 (469)
T KOG3964|consen 102 CS---ALLPVWLGKKFP--ERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDD---------EVIISGANLSN 167 (469)
T ss_pred ch---hhchHHHhhhhh--hhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccH---------hhhcccccchh
Confidence 00 000000111222 2355544422 11110011000000112358999999999 56899999999
Q ss_pred ccCC
Q 004061 396 GRYD 399 (776)
Q Consensus 396 ~r~d 399 (776)
+++.
T Consensus 168 dyfT 171 (469)
T KOG3964|consen 168 DYFT 171 (469)
T ss_pred hhhc
Confidence 6663
No 145
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=98.36 E-value=3.3e-06 Score=87.90 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=100.0
Q ss_pred CCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHH
Q 004061 210 KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGE 289 (776)
Q Consensus 210 ~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~ 289 (776)
+-.++++|..- |....| .+=+.+-..|++|++-|-|.+-.|.+- .-|.|
T Consensus 117 g~Tr~~vy~qP--p~~~~p-------------~IKE~vR~~I~~A~kVIAIVMD~FTD~----------------dIf~D 165 (284)
T PF07894_consen 117 GVTRATVYFQP--PKDGQP-------------HIKEVVRRMIQQAQKVIAIVMDVFTDV----------------DIFCD 165 (284)
T ss_pred CCceEEEEeCC--CCCCCC-------------CHHHHHHHHHHHhcceeEEEeeccccH----------------HHHHH
Confidence 33678998873 222223 345678899999999999999888652 45666
Q ss_pred HHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccce
Q 004061 290 LLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369 (776)
Q Consensus 290 ~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K 369 (776)
+|.++-+|||-|+||+ |..+...+. .-..-+.. ....++ +++|+.-.. ..+..+....+-...|+|
T Consensus 166 LleAa~kR~VpVYiLL-D~~~~~~Fl--~Mc~~~~v----~~~~~~--nmrVRsv~G-----~~y~~rsg~k~~G~~~eK 231 (284)
T PF07894_consen 166 LLEAANKRGVPVYILL-DEQNLPHFL--EMCEKLGV----NLQHLK--NMRVRSVTG-----CTYYSRSGKKFKGQLKEK 231 (284)
T ss_pred HHHHHHhcCCcEEEEe-chhcChHHH--HHHHHCCC----ChhhcC--CeEEEEecC-----CeeecCCCCeeeCcccce
Confidence 5555559999999998 887543210 00000000 011122 333331100 011111122344568999
Q ss_pred EEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHH
Q 004061 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVL 449 (776)
Q Consensus 370 ~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~ 449 (776)
+|+||+. .++.|+.-++|.-. . --+.+-..++|.+|....
T Consensus 232 F~lvD~~--------~V~~GSYSFtWs~~--~------------------------------~~r~~~~~~tGq~Ve~FD 271 (284)
T PF07894_consen 232 FMLVDGD--------KVISGSYSFTWSSS--R------------------------------VHRNLVTVLTGQIVESFD 271 (284)
T ss_pred eEEEecc--------cccccccceeeccc--c------------------------------cccceeEEEeccccchHh
Confidence 9999999 99999988888211 1 112467789999999999
Q ss_pred HHHHHHhh
Q 004061 450 INFEQRWR 457 (776)
Q Consensus 450 ~~F~~~W~ 457 (776)
+.|....-
T Consensus 272 ~EFR~LyA 279 (284)
T PF07894_consen 272 EEFRELYA 279 (284)
T ss_pred HHHHHHHH
Confidence 99987653
No 146
>PF13918 PLDc_3: PLD-like domain
Probab=98.32 E-value=5.8e-06 Score=80.48 Aligned_cols=61 Identities=31% Similarity=0.508 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccc------CCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCC
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGS------SYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEG 633 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~------~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g 633 (776)
..-.+|++..|++|+++|||+-.-|.|. ..+|| .+..|++-|+ +. |||+||+|++.|.+.
T Consensus 81 T~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-----------~ID~ALR~AA-~~--R~V~VRlLIS~W~ht 146 (177)
T PF13918_consen 81 TLDLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-----------VIDDALRRAA-IE--RGVKVRLLISCWKHT 146 (177)
T ss_pred CcHHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-----------hHHHHHHHHH-HH--cCCeEEEEEeecCCC
Confidence 3457899999999999999998887764 34688 3566666544 34 559999999998754
Q ss_pred C
Q 004061 634 D 634 (776)
Q Consensus 634 ~ 634 (776)
+
T Consensus 147 ~ 147 (177)
T PF13918_consen 147 D 147 (177)
T ss_pred C
Confidence 3
No 147
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.28 E-value=1.7e-07 Score=105.17 Aligned_cols=91 Identities=20% Similarity=0.445 Sum_probs=74.6
Q ss_pred eeeccccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCC----------------------------------C---CCc
Q 004061 94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDV----------------------------------F---GAQ 135 (776)
Q Consensus 94 ~~T~~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~----------------------------------~---~~~ 135 (776)
.-|.++++|+||.|+|.|.|.+..-. ..+.+-+||+|- . .||
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 46889999999999999999998754 459999999870 0 168
Q ss_pred eeEEEEccccccccCceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCC
Q 004061 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (776)
Q Consensus 136 ~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p~~~~~ 186 (776)
|+|++.||+.++... ..+.||.| .+....++.+|.++|+++......+.
T Consensus 259 FLGciNipl~EiP~~-Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPPD-GLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred cccccccchhcCCcc-hHHHHhcc-CcccccccccceEEEEEEEeeecccc
Confidence 999999999999843 58899998 66666668999999999988765443
No 148
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.20 E-value=7.3e-06 Score=93.34 Aligned_cols=103 Identities=23% Similarity=0.376 Sum_probs=76.2
Q ss_pred CCcEEEEEECC-----eeeeeeccccCCCCCeec-cEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCc
Q 004061 80 SDPYVTVVVPQ-----ATVARTRVLKNSQEPVWN-EHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (776)
Q Consensus 80 ~dpyv~v~~~~-----~~~~~T~~~~~~~~P~w~-e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~ 151 (776)
.-|||+|++.+ ....+|.|..|.+||+|| |+|+|.+..|.-- |++.|+++|.++ ..+||++..|+..+..|-
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence 56999999954 333456666789999999 9999999998655 999999999999 589999999999998762
Q ss_pred eeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCC
Q 004061 152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (776)
Q Consensus 152 ~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p~~~~~ 186 (776)
+-+||.+.-... --...|.+.+...|.....
T Consensus 1165 ---RsVpLkN~ySEd-lELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1165 ---RSVPLKNGYSED-LELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred ---eeeecccCchhh-hhhhhheeeeEeccccCcc
Confidence 235553221221 2345677777777764443
No 149
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.11 E-value=9.8e-07 Score=58.90 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=17.9
Q ss_pred eEEeeeeEEEeeeEEEEccccccCcC
Q 004061 709 IYVHAKGMIVDDEYVIMGSANINQRS 734 (776)
Q Consensus 709 ~~lHsK~~IVDd~~~~IGSaNld~RS 734 (776)
...|.|++|||+++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47899999999999999999998764
No 150
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.09 E-value=1.2e-06 Score=98.49 Aligned_cols=91 Identities=23% Similarity=0.409 Sum_probs=78.6
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-----
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (776)
+.+|.|.|+-|+++-+.|.++- +||||.|++..
T Consensus 946 ~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~fp 983 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRFP 983 (1103)
T ss_pred ccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccccc
Confidence 4557888899999998888776 99999999954
Q ss_pred -eeeeeeccccCCCCCeeccEEEEEecCC-Cc----eEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LS----NLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~f~~~~~~~-~~----~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
...+||+|+++|+||+|+|+|.|.++.. +. .+.++|+|+|-++ +||-|.+.+.|+++.
T Consensus 984 ~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 984 AVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 4667999999999999999999998874 32 2889999999998 999999999998876
No 151
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.94 E-value=6.4e-05 Score=88.40 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=87.6
Q ss_pred HHHHHHHHhccc-----eEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004061 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (776)
Q Consensus 564 ~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~ 638 (776)
..++++|++|.+ .|.|+- |-+.. + -.++.++.+|+++| ++|++++.-.+.-+. .
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~-----~-----------s~ii~aL~~Aa~~G--k~V~v~veLkArfde--~ 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSK-----D-----------SPIIDALIEAAENG--KEVTVVVELKARFDE--E 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecC-----C-----------cHHHHHHHHHHHcC--CEEEEEEEehhhccc--h
Confidence 578889999998 799975 43321 1 13445566665545 999999984321111 1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEE
Q 004061 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (776)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IV 718 (776)
.. .. ..+.|.++|+++ +|.+ ....+|+|+++|
T Consensus 401 ~n---i~------------wa~~le~aG~~v-------iyg~--------------------------~~~k~H~K~~li 432 (672)
T TIGR03705 401 AN---IR------------WARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 432 (672)
T ss_pred hh---HH------------HHHHHHHcCCEE-------EEcC--------------------------CCeeeeeEEEEE
Confidence 00 11 246788899986 4633 124899999999
Q ss_pred eee-------EEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhc
Q 004061 719 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWH 774 (776)
Q Consensus 719 Dd~-------~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~ 774 (776)
|.+ ++.+||.|+|......- ++++++..+++++. .+.+++..||.
T Consensus 433 ~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i~~---------d~~~~F~~l~~ 484 (672)
T TIGR03705 433 VRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEIGR---------DVARVFNYLTG 484 (672)
T ss_pred EEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHHHH---------HHHHHHHHhhC
Confidence 974 79999999999976533 78888877776643 45556666554
No 152
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.87 E-value=1.1e-05 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.3
Q ss_pred ecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004061 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (776)
Q Consensus 364 ~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~ 395 (776)
.++|+|++|||++ .+++||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 3599999999999 99999999987
No 153
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=97.82 E-value=0.0016 Score=69.76 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHhcc-----ceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004061 241 GTCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~-----~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~ 315 (776)
-+.|+.+++.|++|- .+|.|+-|....+ ..|.++|.+||+.|-+|-+++ .--..+.
T Consensus 17 Y~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~----------------S~iv~aLi~AA~nGK~Vtv~v-ELkARFD-- 77 (352)
T PF13090_consen 17 YESFDPVVDFLREAAEDPDVLAIKITLYRVASN----------------SPIVNALIEAAENGKQVTVLV-ELKARFD-- 77 (352)
T ss_dssp TB-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-----------------HHHHHHHHHHHTT-EEEEEE-STTSSST--
T ss_pred ccccHHHHHHHHHHhcCCCccEEEEEEEecCCC----------------CHHHHHHHHHHHcCCEEEEEE-EEecccc--
Confidence 455778899999884 5788888865443 799999999999999999998 3222111
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004061 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (776)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~ 395 (776)
...+-.+.+.|+++||+|.+- .+ .+.-|.|+++|=.+- +.+-...+.+|.-|...
T Consensus 78 --------Ee~Ni~Wa~~Le~aGv~ViyG--~~--------------glKvHaK~~lI~R~e-~~~~~~Y~hlgTGNyNe 132 (352)
T PF13090_consen 78 --------EENNIHWAKRLEEAGVHVIYG--VP--------------GLKVHAKICLIVRRE-GGGLRRYAHLGTGNYNE 132 (352)
T ss_dssp --------TCCCCCCCHHHHHCT-EEEE----T--------------T-EE--EEEEEEEEE-TTEEEEEEEEESS-SST
T ss_pred --------HHHHhHHHhhHHhcCeEEEcC--CC--------------ChhheeeEEEEEEEe-CCcEEEEEEEcCCCcCc
Confidence 001123557789999999852 12 123799999996651 11233578888877544
Q ss_pred ccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHH
Q 004061 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR 455 (776)
Q Consensus 396 ~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~~ 455 (776)
. ...-+-|.++.-..+ .+.|+...|...
T Consensus 133 ~--------------------------------TAr~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 133 K--------------------------------TARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp T--------------------------------HCCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred c--------------------------------chhheecceeecCCHHHHHHHHHHHHHH
Confidence 0 012466988887776 568899999744
No 154
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.66 E-value=3.4e-05 Score=91.28 Aligned_cols=108 Identities=19% Similarity=0.402 Sum_probs=86.6
Q ss_pred ceeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC
Q 004061 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (776)
Q Consensus 10 ~~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~ 89 (776)
.+++|-.|+|.|-|.-+++|+-...... .||||+.++-
T Consensus 1517 LsIsY~~~~LtImV~H~K~L~~Lqdg~~------------------------------------------P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1517 LSISYNNGTLTIMVMHAKGLALLQDGQD------------------------------------------PDPYVKTYLL 1554 (1639)
T ss_pred EEEEEcCceEEEEhhhhcccccccCCCC------------------------------------------CCcceeEEec
Confidence 3468899999999999999964332222 8999999993
Q ss_pred C----eeeeeeccccCCCCCeeccEEEEE-ecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 90 Q----ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 90 ~----~~~~~T~~~~~~~~P~w~e~f~~~-~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
. ..+.||+++.+|.+|.|||.++.. .+.. ...|+++||....+. +.++|.+.|+|..+....+..+||+|
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred CCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 2 456799999999999999998876 3332 235999999998887 89999999999988865556699998
No 155
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.54 E-value=0.00015 Score=82.41 Aligned_cols=108 Identities=19% Similarity=0.401 Sum_probs=83.0
Q ss_pred CCcEEEEEECCe---eeeeeccccCCCCCeeccEEEEEecCC----------------CceEEEEEEEc-CCCC-CceeE
Q 004061 80 SDPYVTVVVPQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDD-DVFG-AQIIG 138 (776)
Q Consensus 80 ~dpyv~v~~~~~---~~~~T~~~~~~~~P~w~e~f~~~~~~~----------------~~~l~i~v~~~-~~~~-~~~iG 138 (776)
+|||+.+...+. ...+|+++++|.+|.|+|.|.|.+... ...|++.+|++ +... ++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 899999998552 124899999999999999999998765 22388999994 4444 89999
Q ss_pred EEEccccccccCceeEEEEEcc-CCCCCC---CCCCceEEEEEEEEecCCCCc
Q 004061 139 TAAIPAHTIATGELISRWYDII-APSGSP---PKPGASIQLELKFTPCDKNPL 187 (776)
Q Consensus 139 ~~~i~l~~~~~~~~~~~w~~l~-~~~~~~---~~~~g~i~l~l~~~p~~~~~~ 187 (776)
.+.+++........-+.||-|. .++|+. ...-|.++++++|.-..-.|+
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlps 283 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLPS 283 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceeccH
Confidence 9999999988666677999884 222322 245688999999988665554
No 156
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.48 E-value=0.00021 Score=65.26 Aligned_cols=80 Identities=29% Similarity=0.515 Sum_probs=63.7
Q ss_pred CCcEEEEEE---CCeeeeeeccccCCCCCeeccEEEEEecC----------------CCceEEEEEEEcCCC--------
Q 004061 80 SDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF-------- 132 (776)
Q Consensus 80 ~dpyv~v~~---~~~~~~~T~~~~~~~~P~w~e~f~~~~~~----------------~~~~l~i~v~~~~~~-------- 132 (776)
.++||++.+ ++....+|+++.++.-|+|+.++.|+++- ....+.++||+...-
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 678999986 44556799999999999999999999772 123488999986532
Q ss_pred ---CCceeEEEEcccccccc-CceeEEEEEc
Q 004061 133 ---GAQIIGTAAIPAHTIAT-GELISRWYDI 159 (776)
Q Consensus 133 ---~~~~iG~~~i~l~~~~~-~~~~~~w~~l 159 (776)
+|-.+|++.||+.+|.. ...+.+|||+
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 36799999999999873 4568899985
No 157
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00037 Score=77.92 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=68.6
Q ss_pred CCcEEEEEECC------eeeeeeccccCCCCCeeccEEEEEecCCCc----eEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 80 SDPYVTVVVPQ------ATVARTRVLKNSQEPVWNEHFNIPLAHPLS----NLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 80 ~dpyv~v~~~~------~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~----~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
--|||+|.+-+ .+++.|+++.++-.|.+||+|.|-+.+... .|.+.|.|+-... |.++|.+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 56999999833 567789999999999999999999887543 3889999988877 899999999999998
Q ss_pred cCceeEEEEEc
Q 004061 149 TGELISRWYDI 159 (776)
Q Consensus 149 ~~~~~~~w~~l 159 (776)
.......|+||
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 66677899998
No 158
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.018 Score=65.94 Aligned_cols=136 Identities=20% Similarity=0.183 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004061 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~-----sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~ 315 (776)
-+.|+.+++.|++|-. .|-++-|.... ...|++||.+||+.|-+|-+|| .=-.-+.
T Consensus 351 YeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~----------------dSpIV~ALi~AA~nGKqVtvlV-ELkARFD-- 411 (696)
T COG0855 351 YESFEPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVRALIDAAENGKQVTVLV-ELKARFD-- 411 (696)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEEEEEEEecCC----------------CCHHHHHHHHHHHcCCeEEEEE-EEhhhcC--
Confidence 5678899999999953 34445554322 3799999999999999999998 2111000
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcc--eEEEEccccC
Q 004061 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRK--ITAFIGGIDL 393 (776)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~--~~a~vGG~Ni 393 (776)
...+-.+.+.|+++||+|.+- .. -+..|.|+++|=.+ ++.+ ..+=+|.-|.
T Consensus 412 --------EE~NI~WAk~LE~AGvhVvyG--~~--------------glKtHAKm~lVvRr---E~~~lrrY~HlGTGNY 464 (696)
T COG0855 412 --------EEANIHWAKRLERAGVHVVYG--VV--------------GLKTHAKMLLVVRR---EGGKLRRYVHLGTGNY 464 (696)
T ss_pred --------hhhhhHHHHHHHhCCcEEEec--cc--------------ceeeeeeEEEEEEe---cCCcEEEEEEecCCCC
Confidence 111234678899999999862 11 12379999998655 1122 2344444442
Q ss_pred CCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHH
Q 004061 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQ 454 (776)
Q Consensus 394 ~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~ 454 (776)
.. . . ..-+-|+++.-..| .+.|+...|..
T Consensus 465 n~-----~--------------------------T-AriYTD~sl~Tad~~i~~Dv~~lFn~ 494 (696)
T COG0855 465 NP-----K--------------------------T-ARLYTDLSLLTADPEIGADVTDLFNF 494 (696)
T ss_pred Cc-----c--------------------------c-eeeeeechhccCCHHHHHHHHHHHHH
Confidence 22 0 0 12345777776655 57899998873
No 159
>PF13918 PLDc_3: PLD-like domain
Probab=97.33 E-value=0.00094 Score=65.23 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHH-hcCCEEEEEE
Q 004061 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (776)
Q Consensus 243 ~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa-~rGV~VriLv 305 (776)
-.++++..|+.|+++|+|+...+.|-+.. ..+.+. ...|.++|++|| .|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~-~~~~~Y-----WP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRY-SKPNRY-----WPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeec-CCCCCc-----chhHHHHHHHHHHHcCCeEEEEE
Confidence 36899999999999999999999885322 122222 368999999887 8999999998
No 160
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.21 E-value=0.00049 Score=77.39 Aligned_cols=126 Identities=22% Similarity=0.262 Sum_probs=85.5
Q ss_pred CCcEEEEEEC---C--eeeeeeccccCCCCCeeccEEEEEecC-----CCceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 80 SDPYVTVVVP---Q--ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 80 ~dpyv~v~~~---~--~~~~~T~~~~~~~~P~w~e~f~~~~~~-----~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
+|||.++.-- + ..+.+|.+++++++|.|. .|.+++.. +..++++.+||.+..+ +++||++..++..+.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 9999998762 2 456799999999999996 67776544 3456999999999988 699999999999887
Q ss_pred cCceeEEEEEccCCCCCC----CCCCceEEEEEEEEecCCCCccccccCCCCCCCCCCCccCCCC
Q 004061 149 TGELISRWYDIIAPSGSP----PKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLR 209 (776)
Q Consensus 149 ~~~~~~~w~~l~~~~~~~----~~~~g~i~l~l~~~p~~~~~~f~~g~~~~~ef~~v~~t~~p~~ 209 (776)
. ......+++..++.+. .+..|.+.+ .-+-....++|..+++|+.+....-.-+|..+
T Consensus 236 ~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l--~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaS 297 (529)
T KOG1327|consen 236 E-PGSPNQIMLINPKKKAKKKSYKNSGQLIL--DRFTSLDQYSFLDYIAGGEQLNFTVGIDFTAS 297 (529)
T ss_pred c-cCCcccccccChhhhhhhhcccccceEEe--hheeehhhhhHHHHHccCceeeeEEEEEEecc
Confidence 4 2222333444444321 223444443 33455578899999999776554433344433
No 161
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.20 E-value=0.00026 Score=75.81 Aligned_cols=98 Identities=15% Similarity=0.307 Sum_probs=79.4
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeeccEEEEEecCC------------CceEEEEEEEcCCCC--CceeEEEE
Q 004061 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (776)
Q Consensus 80 ~dpyv~v~~~----~~~~~~T~~~~~~~~P~w~e~f~~~~~~~------------~~~l~i~v~~~~~~~--~~~iG~~~ 141 (776)
.|-|+.+++. .....+|.+++++.+|+|+|.|.+.+... ...++|++|++..|- |.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 6888888872 23346999999999999999999998772 124899999998873 89999999
Q ss_pred ccccccccCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004061 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (776)
Q Consensus 142 i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~ 180 (776)
+.+..|.....++..++|.+.. + ..+|.|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~DGR-K--~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGR-K--AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceeccccc-c--ccCCeeEEEEEEe
Confidence 9999999888888999985432 2 3689999999863
No 162
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.15 E-value=0.0033 Score=65.92 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~ 638 (776)
..+|.+.+.++|++|++-|=|..=-|+. ..+...+..|+ ..|+|-|+||+...
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa-~kR~VpVYiLLD~~-------- 184 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAA-NKRGVPVYILLDEQ-------- 184 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHH-HhcCCcEEEEechh--------
Confidence 3679999999999999999999888872 44555555554 12569999999841
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEE
Q 004061 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (776)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IV 718 (776)
..+.|+.. .+ +.++...--..+++= ...|.++.. .......+-+|.|+|+|
T Consensus 185 ~~~~Fl~M------------c~---~~~v~~~~~~nmrVR-------------sv~G~~y~~-rsg~k~~G~~~eKF~lv 235 (284)
T PF07894_consen 185 NLPHFLEM------------CE---KLGVNLQHLKNMRVR-------------SVTGCTYYS-RSGKKFKGQLKEKFMLV 235 (284)
T ss_pred cChHHHHH------------HH---HCCCChhhcCCeEEE-------------EecCCeeec-CCCCeeeCcccceeEEE
Confidence 11112111 12 223321000111111 112222211 00112357899999999
Q ss_pred eeeEEEEccccccCcCCCCCCcccceeeeeCC
Q 004061 719 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (776)
Q Consensus 719 Dd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~ 750 (776)
|++.++.||.-|.+.|-..+ .-+..++..+
T Consensus 236 D~~~V~~GSYSFtWs~~~~~--r~~~~~~tGq 265 (284)
T PF07894_consen 236 DGDKVISGSYSFTWSSSRVH--RNLVTVLTGQ 265 (284)
T ss_pred ecccccccccceeecccccc--cceeEEEecc
Confidence 99999999999999999844 6676666543
No 163
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0006 Score=72.68 Aligned_cols=107 Identities=22% Similarity=0.391 Sum_probs=85.3
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (776)
.|+|+|.|++|++|..+..... .++|||+|++-. .
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-----------------------------------------~~apyVkVYlL~~g~c~ 306 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-----------------------------------------LPAPYVKVYLLENGFCI 306 (405)
T ss_pred cCceeEEEEecccccccCCccc-----------------------------------------ccCceeEEEEcCCCcee
Confidence 4789999999999976543211 189999999832 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEE-cCCCC-CceeEEEEccccccccCc-eeEEEEEccCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPS 163 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~-~~~~~-~~~iG~~~i~l~~~~~~~-~~~~w~~l~~~~ 163 (776)
.+.+|+...+|..|-+.+...|.-.++..-|.++||. ..+.- +.|+|.+.|-++++.... ..-+||++....
T Consensus 307 ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 307 AKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 3458999999999999999999988888889999996 45554 789999999999998766 778999995443
No 164
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=97.03 E-value=0.0038 Score=73.68 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=75.3
Q ss_pred ccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcC--CEEEEEE--ecCCCcc
Q 004061 237 LYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLV--WDDKTSH 312 (776)
Q Consensus 237 ~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rG--V~VriLv--~D~~gs~ 312 (776)
+.-....-.+.+.+|++|+|.|||+.=.|-....-+... .... +..|..-+.+|.++| -+|+|++ |=++-.-
T Consensus 561 ~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~~--~n~v--~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~ 636 (887)
T KOG1329|consen 561 NEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDSV--LNKV--GDELALRIVKAIRAGEKFRVYIVIPLWPGFEGD 636 (887)
T ss_pred CchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCcc--cchH--HHHHHHHHHHHHhcCCceEEEEEEeCCccccCC
Confidence 333356788999999999999999743332221101000 0011 145555566666655 7777776 2111000
Q ss_pred CccccccC--------CccccCcHHHHhhhcCCCceEE-eccCCCCcccccc---hhccccceecccceEEEEccCCCCC
Q 004061 313 DKLGVKTP--------GVMATHDEETKKFFKHSSVNCV-LAPRYASSKLSYF---KQQIVGTIFTHHQKCVLVDTQASGN 380 (776)
Q Consensus 313 ~~~~~~~~--------~~~~~~~~~~~~~l~~~gv~v~-~~~~~~~~~~~~~---~~~~~~~~~r~H~K~~VID~~~~~~ 380 (776)
..++-.+. .-|..-.....+.|++.|+.-. +-.......+..+ .+...+...--|.|+||||++
T Consensus 637 ~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~---- 712 (887)
T KOG1329|consen 637 DTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDE---- 712 (887)
T ss_pred CCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecCC----
Confidence 01100000 0000001234556666666621 0000000000000 111222334579999999999
Q ss_pred CcceEEEEccccCCCccCCC
Q 004061 381 NRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 381 ~~~~~a~vGG~Ni~~~r~d~ 400 (776)
.+++||+||.+..+++
T Consensus 713 ----~vIIGSANINqRSm~G 728 (887)
T KOG1329|consen 713 ----YVIIGSANINQRSMLG 728 (887)
T ss_pred ----EEEEeecccchhhccC
Confidence 9999999999944443
No 165
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.00059 Score=71.55 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=78.2
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (776)
...|.|+++++..|..+|..+- +||||...+.. .
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKK 269 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchh
Confidence 3458899999999998887665 89999998842 3
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
-..||.+.+++.+|.|+++|.+.+.+.. ..+.|.|||.+.-+ .+.+|-... ..++.++....|+..
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~--g~~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSML--GGYRRGEVHKHWGRC 339 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccc--cccccchhhcCcccc
Confidence 3469999999999999999999988753 34899999998875 788887543 345556666677654
No 166
>PLN02964 phosphatidylserine decarboxylase
Probab=96.97 E-value=0.0012 Score=77.23 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=68.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccccccCceeE--E
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS--R 155 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~--~ 155 (776)
.|+|+.+..-+..++||.+.++|.+|+||+...|.+.+.... ..+.|||++.++ ++.+|.+.+++.++...+..+ .
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 689888877777889999999999999999999998876544 799999999998 899999999998887543322 2
Q ss_pred EEEccCCCC
Q 004061 156 WYDIIAPSG 164 (776)
Q Consensus 156 w~~l~~~~~ 164 (776)
-|.++++.+
T Consensus 148 aF~lfD~dg 156 (644)
T PLN02964 148 SFDLLDPSS 156 (644)
T ss_pred HHHHHCCCC
Confidence 255556654
No 167
>PLN02866 phospholipase D
Probab=96.95 E-value=0.0025 Score=76.92 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhccceEEEecccccccCCCC-CccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEec
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAW-PSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~-p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp 628 (776)
...+.+++++|.+||++|||+.=.|.|..+.+ |.. . .....+...|.++++ +||+|+||+=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~-----D-~~g~RL~~lL~rKAk--rGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH-----D-HESSRLDSLLEAKAK--QGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC-----C-chHHHHHHHHHHHHH--CCCEEEEEEE
Confidence 57889999999999999999654433221111 100 0 013455566666655 5599999854
No 168
>PLN03008 Phospholipase D delta
Probab=96.86 E-value=0.0022 Score=75.88 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=41.0
Q ss_pred CCCCccCc-cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCC----CCcHHHHHHHHHh--cCCEEEEEE
Q 004061 233 DGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKSE--EGVRVLLLV 305 (776)
Q Consensus 233 ~~g~~~~~-~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~----~~~l~~~L~~aa~--rGV~VriLv 305 (776)
++||+..- .....+.+++|++|++.|||+.=+|....+.+.... ..|. ...|..+|.+|.+ .+-+|.|++
T Consensus 557 ~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~---~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 557 ECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYR---DAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred ccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccccccccc---ccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 44444432 356789999999999999998554544322210000 0111 1346666666654 478888887
No 169
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.84 E-value=0.00082 Score=79.26 Aligned_cols=87 Identities=23% Similarity=0.421 Sum_probs=75.8
Q ss_pred EEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee-eeee
Q 004061 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (776)
Q Consensus 18 ~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~~~T 96 (776)
.++|.+++|-+|.+.|..+. .|||+.|.++.+. .-++
T Consensus 614 LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~~ 651 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDRA 651 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhhh
Confidence 36789999999999887776 8999999998754 3477
Q ss_pred ccccCCCCCeeccEEEEEecCCCce-EEEEEEEcCCCC-CceeEEEEccccc
Q 004061 97 RVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHT 146 (776)
Q Consensus 97 ~~~~~~~~P~w~e~f~~~~~~~~~~-l~i~v~~~~~~~-~~~iG~~~i~l~~ 146 (776)
..+.++++|+|.+.|.+...-|... +.+.|||+|..+ ++.||...+.|++
T Consensus 652 ~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 652 HYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 8889999999999999998887655 899999999998 9999999999874
No 170
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.011 Score=57.73 Aligned_cols=141 Identities=18% Similarity=0.252 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
+.....+...|+.|.+-..+.+|+-..+ -..+.+.|..+..+||++|||. +..-+..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~sG---------------~sll~~~L~d~~~Kgvkgkilt-s~YlnfT------- 94 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITESG---------------LSLLFDLLLDLVNKGVKGKILT-SDYLNFT------- 94 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCcc---------------HHHHHHHHHHHhcCCceEEEec-ccccCcc-------
Confidence 5678899999999999887788864332 3688999999999999999997 5542222
Q ss_pred CccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCC
Q 004061 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (776)
.+...++.+.-.+|+++.+.-. +..+|.|=.+.-.. ....|++|+.|+++.-...
T Consensus 95 -----dP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 95 -----DPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred -----CHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 2234455555566888764321 12378888886543 2348999999999954421
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCce-eeeeEEeChHHHHHHHHHHHHhhh
Q 004061 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWRK 458 (776)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~-D~~v~i~Gpav~~l~~~F~~~W~~ 458 (776)
. ..|. -+...-.|..|..+...|...|..
T Consensus 150 -n----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 150 -N----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred -C----------------------------HHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 1 1221 123334678999999999999973
No 171
>PLN02352 phospholipase D epsilon
Probab=96.73 E-value=0.0029 Score=74.60 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCC----CCcHHHHHHHHHhc--CCEEEEEE
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG----DLTLGELLKYKSEE--GVRVLLLV 305 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~----~~~l~~~L~~aa~r--GV~VriLv 305 (776)
.+...+.+++|++||+.|||+.=+|....+.+.... ..+. +..|.++|.+|.++ +-+|.|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~---~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDN---HCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhcccccccccc---ccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 678999999999999999998544533222111100 0000 13677777777665 57888877
No 172
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.00066 Score=71.19 Aligned_cols=124 Identities=23% Similarity=0.285 Sum_probs=88.3
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----ee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~ 92 (776)
..++.+|.+|++|.+++..+. .|||++..+.. ..
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~ 130 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLN 130 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhh
Confidence 347899999999999998776 89999998833 22
Q ss_pred eeeeccccCCCCCeeccEEEEEecC----CCceEEEEEEEcCCCC-CceeEEEEccccccccC--ceeEEEEEccCCCC-
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSG- 164 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~----~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~--~~~~~w~~l~~~~~- 164 (776)
..+|++..++.||.|+|+.+...-. ....+++.|.|.+.+. .+++|+..+++..+... .....|+.---+.+
T Consensus 131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r 210 (362)
T KOG1013|consen 131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER 210 (362)
T ss_pred hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence 3588899999999999887766322 2344788888888887 89999999988887642 22333443211211
Q ss_pred ---CCCCCCceEEEEEEEEec
Q 004061 165 ---SPPKPGASIQLELKFTPC 182 (776)
Q Consensus 165 ---~~~~~~g~i~l~l~~~p~ 182 (776)
...+..|+|.+++.|.-.
T Consensus 211 ad~~~~E~rg~i~isl~~~s~ 231 (362)
T KOG1013|consen 211 ADRDEDEERGAILISLAYSST 231 (362)
T ss_pred ccccchhhccceeeeeccCcC
Confidence 113568889999887543
No 173
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.43 E-value=0.0024 Score=54.36 Aligned_cols=71 Identities=14% Similarity=0.322 Sum_probs=53.9
Q ss_pred EEECCeeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEE
Q 004061 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (776)
Q Consensus 86 v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~ 158 (776)
+.++..-..||.++....+|+|.|+|.|++.-. ...|.+.|+. ..-+...||.+.+.+.++.. ++.++|.+
T Consensus 29 ~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 29 LTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred EecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCCH-HHhhhhhc
Confidence 344555567999999999999999999997753 3448888888 22238999999999988864 34567754
No 174
>PLN02270 phospholipase D alpha
Probab=96.10 E-value=0.017 Score=68.49 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecC-CCCCCCCC----CCcHHHHHHHHHh--cCCEEEEEE
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGG----DLTLGELLKYKSE--EGVRVLLLV 305 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~-~~~~~~g~----~~~l~~~L~~aa~--rGV~VriLv 305 (776)
.+...+.+.+|++|+++|||+.=+|......+... ......|. ...|..+|.++.+ .+-+|.|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 57888999999999999999865565432211100 00000111 1355666666654 478899887
No 175
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.92 E-value=0.039 Score=57.36 Aligned_cols=50 Identities=30% Similarity=0.268 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEec
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D 307 (776)
+...+.+.++|++|+++|+|..|. .. -..|.+.|++|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~--~~---------------l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP--EF---------------LEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G--GG---------------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence 678899999999999999999873 11 168999999999999999999943
No 176
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.87 E-value=0.78 Score=43.48 Aligned_cols=104 Identities=18% Similarity=0.283 Sum_probs=68.5
Q ss_pred CcEEEEEECCee--eeeecccc-CCCCCeeccEEEEEecC---C------CceEEEEEEEcCCCCC-ceeEEEEcccccc
Q 004061 81 DPYVTVVVPQAT--VARTRVLK-NSQEPVWNEHFNIPLAH---P------LSNLEIQVKDDDVFGA-QIIGTAAIPAHTI 147 (776)
Q Consensus 81 dpyv~v~~~~~~--~~~T~~~~-~~~~P~w~e~f~~~~~~---~------~~~l~i~v~~~~~~~~-~~iG~~~i~l~~~ 147 (776)
..||....+... .+.|.... .+..-.|+|.|.+++.- . ...++|.|+....-+. ..+|++.|.|.++
T Consensus 25 ~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 25 KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh
Confidence 345555444432 23444333 36667999999988443 1 1238899988754443 5999999999999
Q ss_pred cc--CceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCCcc
Q 004061 148 AT--GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLY 188 (776)
Q Consensus 148 ~~--~~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p~~~~~~f 188 (776)
.. .+....-++|... ......|.+++.+.+....+.|
T Consensus 105 ~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~~ 143 (143)
T PF10358_consen 105 ANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPDF 143 (143)
T ss_pred hCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCCC
Confidence 85 3456667776322 1457889999999887766653
No 177
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=94.61 E-value=0.0075 Score=71.48 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEE-ecC---------CCceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIP-LAH---------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~-~~~---------~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
+|||+.+++-+..+ .|.++.+|++|.|+++..|. +.- .-.-+.++|+|.++.+ ++++|.......-..
T Consensus 227 sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~ 305 (1105)
T KOG1326|consen 227 SDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMV 305 (1105)
T ss_pred CCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEe
Confidence 89999999877664 89999999999999998886 111 1122778999999988 899999776654443
Q ss_pred cCceeEEEEEcc
Q 004061 149 TGELISRWYDII 160 (776)
Q Consensus 149 ~~~~~~~w~~l~ 160 (776)
. ...-.|+++.
T Consensus 306 ~-~p~lkw~p~~ 316 (1105)
T KOG1326|consen 306 Q-CPALKWVPTM 316 (1105)
T ss_pred c-CCccceEEee
Confidence 2 3455799984
No 178
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.60 E-value=0.067 Score=62.87 Aligned_cols=88 Identities=25% Similarity=0.415 Sum_probs=68.1
Q ss_pred eeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004061 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (776)
Q Consensus 14 ~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (776)
.+-+++.|+||+|.-|..++ ...||+|.+-+
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~ 733 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPT 733 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCc
Confidence 46788999999999887544 56799998833
Q ss_pred ---eeeeeeccccC-CCCCeecc-EEEEE--ecCCCceEEEEEEEcCCCCCceeEEEEccccccccC
Q 004061 91 ---ATVARTRVLKN-SQEPVWNE-HFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (776)
Q Consensus 91 ---~~~~~T~~~~~-~~~P~w~e-~f~~~--~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~ 150 (776)
.+..||++..+ +.||+|+| .|+|. +.+....|+|.|+++.. .+||.-.+|+..+..|
T Consensus 734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEgg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEGG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccCC---ceeeeeccchhcccCc
Confidence 24458888765 99999985 57877 44555669999999754 7999999999988866
No 179
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.50 E-value=0.4 Score=52.29 Aligned_cols=104 Identities=15% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecC--------CCceEEEEEEEcCC-CC-CceeEEEEcccccc--
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH--------PLSNLEIQVKDDDV-FG-AQIIGTAAIPAHTI-- 147 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~--------~~~~l~i~v~~~~~-~~-~~~iG~~~i~l~~~-- 147 (776)
..-+++..++++.. .|..+..+.+|.||....+.+.. ...+|++++|-.+. .+ .+.||.+.++|-..
T Consensus 18 ~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 45678888888664 78888899999999999988765 23459999999883 33 79999999998776
Q ss_pred -ccC--ceeEEEEEccCCCCCCCCCCceEEEEEEEEecCC
Q 004061 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (776)
Q Consensus 148 -~~~--~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p~~~ 184 (776)
..+ .....||+|++.+++-.+...+|.+.+.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 433 3566899998774433345678888887666544
No 180
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=94.32 E-value=0.16 Score=54.73 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccC
Q 004061 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (776)
Q Consensus 606 ~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~ 685 (776)
.++.++..|+++| -+|.+++--.+-- |.... +.| .+.|.++|+.| +|.+
T Consensus 51 ~iv~aLi~AA~nG--K~Vtv~vELkARF--DEe~N---i~W------------a~~Le~aGv~V-------iyG~----- 99 (352)
T PF13090_consen 51 PIVNALIEAAENG--KQVTVLVELKARF--DEENN---IHW------------AKRLEEAGVHV-------IYGV----- 99 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSS--TTCCC---CCC------------CHHHHHCT-EE-------EE-------
T ss_pred HHHHHHHHHHHcC--CEEEEEEEEeccc--cHHHH---hHH------------HhhHHhcCeEE-------EcCC-----
Confidence 3556666676666 7888888754421 11111 124 35578999987 5643
Q ss_pred CCcccccCCCCcccccccCceeceEEeeeeEEEe-------eeEEEEccccccCcCCCCCCcccceeeeeCCCcch
Q 004061 686 APKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD-------DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (776)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVD-------d~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~ 754 (776)
....+|||+++|= .+++.+|+.|+|......= +.++++..+++++.
T Consensus 100 ---------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i~~ 152 (352)
T PF13090_consen 100 ---------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEIGA 152 (352)
T ss_dssp ---------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHHHH
T ss_pred ---------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHHHH
Confidence 1358999999886 3699999999999987643 78899888887764
No 181
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.13 E-value=0.68 Score=40.13 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=62.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEc
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
++..+.+.+++..+++|.-+.. .+..|++.|+|.+.... .|+|.|+-.|- ....|...+.|++...+ .-.++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRsR-ELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERSR-ELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeeccc-EEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence 6788999999988889987765 57789999999997654 79999987654 35667677778774322 12233
Q ss_pred cCCCCCCCCCCceEEEEEEE
Q 004061 160 IAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~~ 179 (776)
.++|.+..++.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 467888888888
No 182
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.06 E-value=1.7 Score=42.19 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=44.8
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-----CceeEEEEcccc
Q 004061 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (776)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-----~~~iG~~~i~l~ 145 (776)
+|-||++.+ +++.. ..|+-+.. .++.|||-.+|++.-. ...|.|+||+....+ ...+|.+.++|.
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 577888866 44322 13443333 6799999999986542 234999999865321 257999999987
Q ss_pred ccc
Q 004061 146 TIA 148 (776)
Q Consensus 146 ~~~ 148 (776)
+..
T Consensus 105 d~~ 107 (158)
T cd08398 105 DYT 107 (158)
T ss_pred CCC
Confidence 644
No 183
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.23 E-value=2.6 Score=41.58 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=45.4
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeccEEEEEecCC---C-ceEEEEEEEcCCCC-----------------
Q 004061 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP---L-SNLEIQVKDDDVFG----------------- 133 (776)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~f~~~~~~~---~-~~l~i~v~~~~~~~----------------- 133 (776)
.+.||++.+ +++.. ..|+.+....++.|||.+.|++.-. . ..|.|+||+....+
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~ 106 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD 106 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence 567888765 44322 2555555567899999999986542 2 33899999854321
Q ss_pred CceeEEEEccccccc
Q 004061 134 AQIIGTAAIPAHTIA 148 (776)
Q Consensus 134 ~~~iG~~~i~l~~~~ 148 (776)
...||.+.++|.+..
T Consensus 107 ~~~ig~~n~~LFd~~ 121 (173)
T cd08693 107 DNPIAWVNTMVFDYK 121 (173)
T ss_pred ceEEEEEeEEEEccc
Confidence 367888888876644
No 184
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.11 E-value=1.6 Score=42.15 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=69.2
Q ss_pred cEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCC--------------ceEEEEEEEcCCCC-CceeEEEEccccc
Q 004061 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (776)
Q Consensus 82 pyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~--------------~~l~i~v~~~~~~~-~~~iG~~~i~l~~ 146 (776)
-.+.+.+.+++ ++|+.+.++.+|.|+|.|-|++.... .++.+.|...+..+ ..++|+..+..-.
T Consensus 36 ~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 36 FTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred EEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 34455556655 79999999999999999999987642 34788888777776 5888988888766
Q ss_pred cccCcee--EEEEEccCCCCCCCCCCceEEEEEEEEecC
Q 004061 147 IATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (776)
Q Consensus 147 ~~~~~~~--~~w~~l~~~~~~~~~~~g~i~l~l~~~p~~ 183 (776)
+...... ..-..|.+.....--..|-|.+.+..+|..
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 5532222 223334333222112689999999888864
No 185
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=91.65 E-value=1.1 Score=44.21 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcc
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (776)
..|+..+...|..|+++..+. .|..+. - --.+...+..+ .++||+++|+++..-+ -.+
T Consensus 38 e~il~~Li~~l~k~~ef~IsV-aFit~s------G---------~sll~~~L~d~--~~Kgvkgkilts~Yln-fTd--- 95 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV-AFITES------G---------LSLLFDLLLDL--VNKGVKGKILTSDYLN-FTD--- 95 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE-EEeeCc------c---------HHHHHHHHHHH--hcCCceEEEecccccC-ccC---
Confidence 478999999999999888777 343321 1 01222233444 3466999999985321 011
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEe
Q 004061 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (776)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVD 719 (776)
+.++ ++.|.-..++ ++++..+. .-.|+|-.|..
T Consensus 96 ------------P~al---~~Ll~~~nve------~r~~~~~~--------------------------~~fH~KgYiFe 128 (198)
T COG3886 96 ------------PVAL---RKLLMLKNVE------LRVSTIGS--------------------------ANFHTKGYIFE 128 (198)
T ss_pred ------------HHHH---HHHHhhhccc------eEEEecCc--------------------------cccccceeEEE
Confidence 1111 2222222343 24554321 23455555443
Q ss_pred ---eeEEEEccccccCcCCCCCCcccceeeeeCC
Q 004061 720 ---DEYVIMGSANINQRSMAGSKDTEIAMGSYQP 750 (776)
Q Consensus 720 ---d~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~ 750 (776)
.-.++|||+|+.+-.+..| .|-++.+...
T Consensus 129 ~~~~~taiiGSsNlt~sALt~n--~Ewn~k~s~~ 160 (198)
T COG3886 129 HNTGITAIIGSSNLTDSALTVN--EEWNLKVSSS 160 (198)
T ss_pred ecceEEEEEccchhhhhhcccC--HHHHhhhccc
Confidence 2248999999999999855 9999988654
No 186
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=91.50 E-value=0.59 Score=53.97 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCC
Q 004061 607 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 686 (776)
Q Consensus 607 ~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~ 686 (776)
+..++..|+++| -+|.+|+--.+ .=|.... ++| .+.|.++|+.+ +|.+
T Consensus 386 IV~ALi~AA~nG--KqVtvlVELkA--RFDEE~N---I~W------------Ak~LE~AGvhV-------vyG~------ 433 (696)
T COG0855 386 IVRALIDAAENG--KQVTVLVELKA--RFDEEAN---IHW------------AKRLERAGVHV-------VYGV------ 433 (696)
T ss_pred HHHHHHHHHHcC--CeEEEEEEEhh--hcChhhh---hHH------------HHHHHhCCcEE-------Eecc------
Confidence 455666676666 67777776432 1111111 123 56688999976 5643
Q ss_pred CcccccCCCCcccccccCceeceEEeeeeEEEe-------eeEEEEccccccCcCCCCCCcccceeeeeCCCcch
Q 004061 687 PKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD-------DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTW 754 (776)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVD-------d~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~ 754 (776)
..-..|+|+++|= -+|+-+|+.|.|..+...= +.++++.-|++++-
T Consensus 434 --------------------~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~~i~~ 486 (696)
T COG0855 434 --------------------VGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIGA 486 (696)
T ss_pred --------------------cceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCHHHHH
Confidence 1247899999885 3599999999999998744 78888888888764
No 187
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=90.09 E-value=0.88 Score=47.84 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=68.6
Q ss_pred CceeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEE
Q 004061 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (776)
Q Consensus 9 ~~~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~ 88 (776)
..++.-..|.|.+.++.+++|.-... .+.-+.+-||.++.
T Consensus 43 ~l~~~s~tGiL~~H~~~GRGLr~~p~----------------------------------------~kglt~~~ycVle~ 82 (442)
T KOG1452|consen 43 HLRLVSSTGILYFHAYNGRGLRMTPQ----------------------------------------QKGLTVCFYCVLEP 82 (442)
T ss_pred eeeeecccceEEEEEecccccccChh----------------------------------------ccCceeeeeeeeee
Confidence 34456678999999999999964321 12223688999999
Q ss_pred CCeeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccc
Q 004061 89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (776)
Q Consensus 89 ~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~ 148 (776)
+....+||.+......-.|.|+|.+.+-... .+.+-||.|+... ++++-.-.+.+..+.
T Consensus 83 drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-vl~~lvySW~pq~RHKLC~~g~l~~~~v~ 142 (442)
T KOG1452|consen 83 DRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-VLHYLVYSWPPQRRHKLCHLGLLEAFVVD 142 (442)
T ss_pred cccCccccccccCCCCccchhhceeecccce-eeeEEEeecCchhhccccccchhhhhhhh
Confidence 9887778888777777799999999876533 4677788877654 554443344444443
No 188
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=88.45 E-value=2.4 Score=40.94 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCcEEEEEE--CCe---eeeeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC---CceeEEEEcccccc
Q 004061 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (776)
Q Consensus 80 ~dpyv~v~~--~~~---~~~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~---~~~iG~~~i~l~~~ 147 (776)
.+-||++.+ ++. ....|.......++.|||..+|++... ...|.|+||+....+ ...||.+.++|.+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567777766 332 222343333347899999999986542 233999999876543 58999999998775
Q ss_pred c
Q 004061 148 A 148 (776)
Q Consensus 148 ~ 148 (776)
.
T Consensus 108 ~ 108 (156)
T cd08380 108 K 108 (156)
T ss_pred c
Confidence 4
No 189
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.34 E-value=1.8 Score=42.55 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=65.9
Q ss_pred CccccccccccCCCcCCCcEEEEEECCeeeeeeccccCC--CCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEE
Q 004061 64 GVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNS--QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141 (776)
Q Consensus 64 ~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~~~~~--~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~ 141 (776)
..++..+.-+-.+....--|++|.++++.+.+|+...-+ ..-.++|.|.+.+..--+.|.|+||......+..|+.+.
T Consensus 21 ~~~p~~E~~RR~~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~ 100 (168)
T PF15625_consen 21 SQCPRAEQNRRQRVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVF 100 (168)
T ss_pred ccCChhHhhhHHHhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEE
Confidence 344555555556666688999999999888888876552 234678999999988667899999998886799999999
Q ss_pred ccccccc
Q 004061 142 IPAHTIA 148 (776)
Q Consensus 142 i~l~~~~ 148 (776)
+++-...
T Consensus 101 vpvP~~~ 107 (168)
T PF15625_consen 101 VPVPGST 107 (168)
T ss_pred eeCCCCc
Confidence 9986544
No 190
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=87.86 E-value=2.3 Score=41.39 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=50.8
Q ss_pred cCCCcEEEEEE--CCeee---eeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-CceeEEEEcccccc
Q 004061 78 ITSDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (776)
Q Consensus 78 ~~~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~ 147 (776)
..+|-||++.+ ++... ..|..+.-+..+.|||-..|++.-. ...|.|+||+....+ ...||.+.++|.+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34788999877 44322 2565565577789999999997653 234999999987654 67999999998765
No 191
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=86.03 E-value=5 Score=39.54 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=43.8
Q ss_pred CCcEEEEEE--CCeee---eeecccc----CCCCCeeccEEEEEecC---CC-ceEEEEEEEcCCCC----------Cce
Q 004061 80 SDPYVTVVV--PQATV---ARTRVLK----NSQEPVWNEHFNIPLAH---PL-SNLEIQVKDDDVFG----------AQI 136 (776)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~----~~~~P~w~e~f~~~~~~---~~-~~l~i~v~~~~~~~----------~~~ 136 (776)
.|-|+++.+ +++.. ..|+... -...+.|||-..|++.- |. ..|.|++|+....+ ...
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 677888866 44322 1333211 13357799999998654 22 33999999865432 468
Q ss_pred eEEEEccccccc
Q 004061 137 IGTAAIPAHTIA 148 (776)
Q Consensus 137 iG~~~i~l~~~~ 148 (776)
||.+.++|.+..
T Consensus 109 lG~~~~~LFd~~ 120 (171)
T cd04012 109 LGWVSLPLFDFR 120 (171)
T ss_pred EEEEeEeeEcch
Confidence 899998887653
No 192
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=85.68 E-value=6.9 Score=41.97 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=28.8
Q ss_pred ceEEeeeeEEE-e---eeEEEEccccccC-cCCCCCCcccceeeeeCC
Q 004061 708 MIYVHAKGMIV-D---DEYVIMGSANINQ-RSMAGSKDTEIAMGSYQP 750 (776)
Q Consensus 708 ~~~lHsK~~IV-D---d~~~~IGSaNld~-RS~~~n~d~Ei~v~i~d~ 750 (776)
...+|+|+.+. . +..++||||||.. -.+. .+-.| .+++.|+
T Consensus 78 ~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 78 DPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 35789999998 2 4589999999998 3332 24589 4445454
No 193
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=84.75 E-value=5.5 Score=37.84 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=45.8
Q ss_pred CcEEEEEE--CCe----eeeeeccccCC-CCCeeccEEEEEecC---CC-ceEEEEEEEcCCCC-C----ceeEEEEccc
Q 004061 81 DPYVTVVV--PQA----TVARTRVLKNS-QEPVWNEHFNIPLAH---PL-SNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (776)
Q Consensus 81 dpyv~v~~--~~~----~~~~T~~~~~~-~~P~w~e~f~~~~~~---~~-~~l~i~v~~~~~~~-~----~~iG~~~i~l 144 (776)
+.||++.+ +++ ....|....-+ ..+.|+|...|++.- |. ..|.|+||..+... . ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45666666 442 22356656555 799999999998654 33 34999999977765 3 6999999998
Q ss_pred cccc
Q 004061 145 HTIA 148 (776)
Q Consensus 145 ~~~~ 148 (776)
.+..
T Consensus 83 Fd~~ 86 (142)
T PF00792_consen 83 FDYR 86 (142)
T ss_dssp B-TT
T ss_pred ECCC
Confidence 8764
No 194
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=83.07 E-value=9.6 Score=37.77 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=32.6
Q ss_pred CcEEEEEE--CCee--eeeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcC
Q 004061 81 DPYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDD 130 (776)
Q Consensus 81 dpyv~v~~--~~~~--~~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~ 130 (776)
.-||++.+ +++. ..+|+.+.-+.++.|||-..|++.-. ...|.|+||+..
T Consensus 31 ~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 31 TVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 35666644 3321 12566666677899999998886653 234999999864
No 195
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=79.60 E-value=5.4 Score=41.34 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecC
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~ 629 (776)
...|.+.+.++|++|++.|+|..+.=. -..+...|.++.+ |||+|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a~~--rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEAVD--RGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHHHH--CCCEEEEEEeC
Confidence 478999999999999999999975422 1234445556655 55999999984
No 196
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=78.07 E-value=0.96 Score=51.67 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=28.6
Q ss_pred eceEEeeeeEEEee-------eEEEEccccccCcCCCCC----------Ccccceeeee
Q 004061 707 FMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGS----------KDTEIAMGSY 748 (776)
Q Consensus 707 ~~~~lHsK~~IVDd-------~~~~IGSaNld~RS~~~n----------~d~Ei~v~i~ 748 (776)
.....|+|+++... .|+++||+||..-.+. . +++|++|++.
T Consensus 345 ~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 345 SRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEEe
Confidence 35688999999986 4999999999876664 3 6799999993
No 197
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.17 E-value=1.3 Score=51.71 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=67.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEcccccccc-CceeEEEE
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~-~~~~~~w~ 157 (776)
.+||+.|.+.......+.+.+.+..|.|+|+|.+.+... ..+.|.|+...... +.....+++..+++.. ......|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 799999999876666777788899999999999996554 36889998876554 4445555555555543 22345687
Q ss_pred EccCCCCCCCCCCceEEEEEEEEecCC
Q 004061 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (776)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~~p~~~ 184 (776)
.+ +..|++...+.+..+..
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 65 34577777776665443
No 198
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=70.58 E-value=27 Score=31.02 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=33.3
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcC
Q 004061 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDD 130 (776)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~ 130 (776)
++-||++.+ +++.. ..|..+.-...+.|||-..|++.-. ...|.+++|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 477888866 44322 2455555466689999999986542 233889999853
No 199
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=69.05 E-value=7.3 Score=42.67 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCC
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~ 631 (776)
...++.+.+.|..||+.|+|++-|.--- +-++...+-.++.....++|.|++.-.-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 3578999999999999999999887521 4567778888888889999999998543
No 200
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=68.66 E-value=11 Score=37.59 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=31.0
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC--C--ceeEEEEccccc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG--A--QIIGTAAIPAHT 146 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~--~--~~iG~~~i~l~~ 146 (776)
..+.|.+...+.+|.|+|+|.+.++.+. ..|.+++++...-. + ..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4468888888999999999999998764 23888998854432 1 466666666654
No 201
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=59.09 E-value=73 Score=28.81 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=48.9
Q ss_pred EEEEEECCeeeeeeccccCCCCCeeccEEEEEecCC--------CceEEEEEEEcCCCCCceeEEEEcccccccc--Cce
Q 004061 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL 152 (776)
Q Consensus 83 yv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~--------~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~--~~~ 152 (776)
||++.+-.-....|.++. ..+|.+|-+-.+.+... ...+.|+++.--......+|.+.|++..+.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566655332334566665 78999987777777664 2348888887553336899999999998873 334
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEE
Q 004061 153 ISRWYDIIAPSGSPPKPGASIQLELKF 179 (776)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (776)
+..-..+.+.+++ .-|.|...++.
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEe
Confidence 6666666555554 57888877764
No 202
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=56.26 E-value=80 Score=35.21 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=47.0
Q ss_pred ceEEEEEEEcCC-------CCCceeEEEEccccccc-cCce---eEEEEEccCCCCC--CCCCCceEEEEEEEEecCCCC
Q 004061 120 SNLEIQVKDDDV-------FGAQIIGTAAIPAHTIA-TGEL---ISRWYDIIAPSGS--PPKPGASIQLELKFTPCDKNP 186 (776)
Q Consensus 120 ~~l~i~v~~~~~-------~~~~~iG~~~i~l~~~~-~~~~---~~~w~~l~~~~~~--~~~~~g~i~l~l~~~p~~~~~ 186 (776)
..|+|.||.-.. .+..+||++.|++.--. .+.. ..+|..+ +.... ......+|+|.|+-.| +|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~i-Gk~~~~~~~~~~aeLHl~Vr~Ep---DP 170 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISI-GKNKQGSGKSPSAELHLVVRAEP---DP 170 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceec-CCCCCCCCCCCcceEEEEEeccC---CC
Confidence 359999998432 23589999999987221 2222 4579988 44321 1124678999998665 56
Q ss_pred ccccccCCCCCC
Q 004061 187 LYRQGIAGDPEH 198 (776)
Q Consensus 187 ~f~~g~~~~~ef 198 (776)
-|.--..+++|-
T Consensus 171 RfVFQFdgepec 182 (460)
T PF06219_consen 171 RFVFQFDGEPEC 182 (460)
T ss_pred eeEEEcCCcccc
Confidence 566555555444
No 203
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=55.36 E-value=18 Score=36.16 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=31.1
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDD 130 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~ 130 (776)
..++|.|...+.+|.|+|++.+.++... ..|.+++++..
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 3468999999999999999999998752 33888877743
No 204
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=52.55 E-value=24 Score=35.49 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=31.9
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV 131 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~ 131 (776)
..++|.|...+.+|.|+|++.+.++.. ...|.+++++...
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 456898988999999999999998875 3348888877543
No 205
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=45.73 E-value=25 Score=39.42 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=37.5
Q ss_pred eeEEEEccccc-cccCceeEEEEEccCCCCCCCCCCceEEEEEEEEecCCCCc
Q 004061 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (776)
Q Consensus 136 ~iG~~~i~l~~-~~~~~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p~~~~~~ 187 (776)
.+|.+.|+++. +..+...+.|+++.+...+. ...|.+ ++++|.-..-.|+
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp~ 51 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLPS 51 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceeccH
Confidence 48999999999 56677889999997665443 456777 8888877655554
No 206
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=44.84 E-value=92 Score=31.11 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=31.7
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCCc---eEEEEEEEcC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLS---NLEIQVKDDD 130 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~~---~l~i~v~~~~ 130 (776)
..+.|.|...+.+|.|.|++.+.++.... .|.++.++..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 45688898899999999999999887532 3888888854
No 207
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=41.23 E-value=58 Score=32.34 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=31.4
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCCc---eEEEEEEEcC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLS---NLEIQVKDDD 130 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~~---~l~i~v~~~~ 130 (776)
..+.|.|...+.+|.|+|++.+.++.... .|.++.++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 44688888899999999999999987532 3888888844
No 208
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=39.22 E-value=1.9e+02 Score=31.42 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=61.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCC--eeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccc--cccCceeEE
Q 004061 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT--IATGELISR 155 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P--~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~--~~~~~~~~~ 155 (776)
..-|++++.+... .+|..+..+..- .-.+...+.+..-..+|+|.||.....+...||.+.+.+.. +...-+...
T Consensus 74 khiyIef~~Gr~d-~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYD-FTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceE-EEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 4567777777644 355333222211 34566666676666679999999888889999999998864 334456778
Q ss_pred EEEccCCCCCCCCCCceEEEEE
Q 004061 156 WYDIIAPSGSPPKPGASIQLEL 177 (776)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l 177 (776)
||.+ ...|. ..++|.|++
T Consensus 153 Wy~c-~kDGq---~~cRIqLSF 170 (508)
T PTZ00447 153 WFVC-FKDGQ---EICKVQMSF 170 (508)
T ss_pred eEEE-ecCCc---eeeeEEEEe
Confidence 9988 45453 356666665
No 209
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=38.90 E-value=61 Score=32.00 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=32.4
Q ss_pred eeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC------CceeEEEEcccc
Q 004061 94 ARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG------AQIIGTAAIPAH 145 (776)
Q Consensus 94 ~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~------~~~iG~~~i~l~ 145 (776)
++|-+..+ .+|.|+|+|.+.++... ..|.+++++...-. ...+|-+.+||-
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 34444444 89999999999997653 23888888854321 344555444443
No 210
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=38.00 E-value=2.4e+02 Score=30.41 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=20.7
Q ss_pred cccceEEEE-ccCCCCCCcceEEEEccccCCC
Q 004061 365 THHQKCVLV-DTQASGNNRKITAFIGGIDLCD 395 (776)
Q Consensus 365 r~H~K~~VI-D~~~~~~~~~~~a~vGG~Ni~~ 395 (776)
+-|.|+.+. .. ++...||+||+|++.
T Consensus 80 ~~HgKlY~f~k~-----g~~~~a~IGSANfS~ 106 (296)
T PF09565_consen 80 PYHGKLYIFSKN-----GKPFRAYIGSANFSQ 106 (296)
T ss_pred CcccEEEEEecC-----CCceEEEEeeccccc
Confidence 369999999 33 234599999999988
No 211
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=37.24 E-value=1.2e+02 Score=31.32 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEE
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv 305 (776)
....+.+.++.++--+.+ +.+-.+.+|..-.++.. .. ...+.++|.+|.++||+|...-
T Consensus 154 ~KHLreL~~~~~~G~ra~-vlf~v~r~d~~~F~P~~---e~--Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 154 QKHLRELERLAKEGYRAV-VLFLVLRSDITRFSPNR---EI--DPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred HHHHHHHHHHHHcCCceE-EEEEEecCCCcEECccc---cc--CHHHHHHHHHHHHcCCEEEEEE
Confidence 344445554444433333 33444444433332221 11 3789999999999999998764
No 212
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=36.63 E-value=38 Score=39.05 Aligned_cols=59 Identities=27% Similarity=0.388 Sum_probs=47.5
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCCC----C-CceeEEEEcccccccc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF----G-AQIIGTAAIPAHTIAT 149 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~----~-~~~iG~~~i~l~~~~~ 149 (776)
..+++|.++.+..+|.|-+.|.++...+. +.+++.+++-+.. . .+++|++...+..+..
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 34569999999999999999988877664 4489999986654 2 6899999998887763
No 213
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=34.84 E-value=1.1e+02 Score=31.75 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=42.6
Q ss_pred CeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHH
Q 004061 212 SHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELL 291 (776)
Q Consensus 212 n~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L 291 (776)
+.+..|+|+.+..| ....+.|.+++++ .+.+ |.+-...++....++.. . ....+.++|
T Consensus 142 ~~~A~FPDApT~RG---------------~kHL~eL~~l~~~-~ra~-vlF~vqr~d~~~f~p~~---~--~Dp~fa~~l 199 (232)
T TIGR00230 142 EILALFPDAPTERG---------------RKHLRELEEILKE-SRAV-VLFVVALPSVRAFSPNR---E--GDEEYYRLL 199 (232)
T ss_pred CCEEECCCCccHHH---------------HHHHHHHHHHHHh-CCEE-EEEEEeCCCCCEEeeCc---c--cCHHHHHHH
Confidence 34788888743322 3445566666666 3333 33333344433333221 1 136999999
Q ss_pred HHHHhcCCEEEEEE
Q 004061 292 KYKSEEGVRVLLLV 305 (776)
Q Consensus 292 ~~aa~rGV~VriLv 305 (776)
.+|.+.||+|.-+-
T Consensus 200 ~~A~~~GVev~a~~ 213 (232)
T TIGR00230 200 RRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHCCCEEEEEE
Confidence 99999999998764
No 214
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.52 E-value=1.3e+02 Score=32.53 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEe
Q 004061 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (776)
Q Consensus 284 ~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~ 343 (776)
+..+.+.|+.|+.+|.++++++-++...+. .....+.|++.||++.+
T Consensus 129 S~~v~~~l~~A~~~~k~~~V~VtESRP~~e-------------G~~~ak~L~~~gI~~~~ 175 (301)
T COG1184 129 SKTVLEVLKTAADRGKRFKVIVTESRPRGE-------------GRIMAKELRQSGIPVTV 175 (301)
T ss_pred cHHHHHHHHHhhhcCCceEEEEEcCCCcch-------------HHHHHHHHHHcCCceEE
Confidence 379999999999999988888845442211 24678889999999864
No 215
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=25.35 E-value=1e+02 Score=32.22 Aligned_cols=48 Identities=40% Similarity=0.310 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEE
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv 305 (776)
.+.-..+.+.|+.|++.|.++.. .+. -..+.+.|..+.+|||.|.+++
T Consensus 119 ~~i~~~~~e~i~~a~~ei~~~~~---~e~--------------~~~l~~~l~~~~~rgv~v~i~~ 166 (247)
T COG1378 119 EEIIEKIKEVINEAEKEIIIVLP---YEI--------------FKELKEPLIRALKRGVRVLILV 166 (247)
T ss_pred HHHHHHHHHHHHhhhcEEEEEeC---HHH--------------HHHhHHHHHHHHHccCeEEEEe
Confidence 66788999999999999998865 110 1688999999999999999998
No 216
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=1.4e+02 Score=34.02 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEec
Q 004061 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA 344 (776)
Q Consensus 285 ~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~ 344 (776)
..+-..|.+|-++|.+.|++|-|..... ..+...+.|.+.||.|.+.
T Consensus 370 ~vV~~ill~A~~~~k~frVvVVDSRP~~-------------EG~~~lr~Lv~~GinctYv 416 (556)
T KOG1467|consen 370 SVVNMILLEAKELGKKFRVVVVDSRPNL-------------EGRKLLRRLVDRGINCTYV 416 (556)
T ss_pred HHHHHHHHHHHHhCcceEEEEEeCCCCc-------------chHHHHHHHHHcCCCeEEE
Confidence 4677888999999999999997765221 1357788899999999763
No 217
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=88 Score=32.72 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=48.4
Q ss_pred HHHHHHhccceEEEEE--EeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccc
Q 004061 247 ICHAISEAHHLIYIVG--WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA 324 (776)
Q Consensus 247 l~~~I~~A~~sI~I~~--~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~ 324 (776)
+++-+..+|.-|-..+ |+++.+..|.. |-+.-++++|..||++++..|+.+ -..+.-.
T Consensus 109 F~~~~~~sR~~IA~l~~~Fi~dg~~ILtH--------g~SRvVl~~L~~Aa~~~~~F~V~v-TEsrPd~----------- 168 (313)
T KOG1466|consen 109 FIERARKSRQKIAMLAQDFITDGCTILTH--------GYSRVVLEVLLTAAQNKKRFRVYV-TESRPDG----------- 168 (313)
T ss_pred HHHHHHHHHHHHHHHhhhHhhCCCEEEEc--------chhHHHHHHHHHHHhcCceEEEEE-ecCCCCC-----------
Confidence 3445556666664443 44444333332 224789999999999999999998 3221111
Q ss_pred cCcHHHHhhhcCCCceEEe
Q 004061 325 THDEETKKFFKHSSVNCVL 343 (776)
Q Consensus 325 ~~~~~~~~~l~~~gv~v~~ 343 (776)
......+.|++.||.+.+
T Consensus 169 -sG~lm~~~L~~~~IPvtl 186 (313)
T KOG1466|consen 169 -SGKLMAKELKKLGIPVTL 186 (313)
T ss_pred -chhHHHHHHHhcCCCeEE
Confidence 124677889999999874
Done!