Query 004061
Match_columns 776
No_of_seqs 417 out of 3246
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsi_A Phosphatidylserine synt 100.0 5.5E-38 1.9E-42 353.2 19.9 363 209-774 24-417 (458)
2 1v0w_A Phospholipase D; hydrol 100.0 2.7E-38 9.2E-43 363.1 16.6 157 241-460 65-224 (506)
3 1xdp_A Polyphosphate kinase; P 99.9 2.6E-25 9E-30 258.9 22.1 140 241-459 346-494 (687)
4 2o8r_A Polyphosphate kinase; s 99.9 8.9E-24 3E-28 244.0 23.4 274 241-753 351-639 (705)
5 4ggj_A Mitochondrial cardiolip 99.8 1.6E-19 5.4E-24 180.9 10.9 133 241-460 45-178 (196)
6 2fk9_A Protein kinase C, ETA t 99.8 1.5E-18 5.1E-23 166.9 12.9 130 10-180 22-156 (157)
7 2dmh_A Myoferlin; beta-sandwic 99.7 1.7E-17 5.8E-22 156.8 15.5 126 15-186 5-138 (140)
8 1gmi_A Protein kinase C, epsil 99.7 1.5E-17 5E-22 156.6 13.9 130 13-182 2-134 (136)
9 3b7y_A E3 ubiquitin-protein li 99.7 2.8E-17 9.6E-22 157.8 14.9 124 15-181 18-153 (153)
10 3kwu_A MUNC13-1; calcium bindi 99.7 1.4E-16 4.6E-21 152.1 18.3 122 13-180 13-146 (148)
11 1wfj_A Putative elicitor-respo 99.7 2.7E-17 9.3E-22 154.5 12.5 123 15-184 8-133 (136)
12 2ep6_A MCTP2 protein; beta san 99.7 4.7E-17 1.6E-21 152.4 14.0 123 13-181 9-132 (133)
13 1byr_A Protein (endonuclease); 99.7 4.3E-17 1.5E-21 156.7 13.7 135 241-460 13-149 (155)
14 3m7f_B E3 ubiquitin-protein li 99.7 1.2E-16 4.2E-21 157.2 15.2 124 16-182 7-142 (176)
15 4gel_A Mitochondrial cardiolip 99.7 9.8E-17 3.4E-21 163.6 11.1 150 241-460 57-210 (220)
16 1rlw_A Phospholipase A2, CALB 99.7 2.5E-16 8.4E-21 145.9 12.5 118 16-181 2-125 (126)
17 2nq3_A Itchy homolog E3 ubiqui 99.6 7.7E-16 2.6E-20 150.9 13.7 126 13-183 32-163 (173)
18 3pyc_A E3 ubiquitin-protein li 99.6 1.8E-15 6.2E-20 141.4 15.2 120 17-179 5-131 (132)
19 1byr_A Protein (endonuclease); 99.6 1.1E-15 3.7E-20 146.8 10.7 134 560-775 13-147 (155)
20 4ggj_A Mitochondrial cardiolip 99.6 3.1E-16 1.1E-20 156.9 6.9 132 560-775 45-176 (196)
21 2b3r_A Phosphatidylinositol-4- 99.6 6.7E-15 2.3E-19 138.0 13.8 107 11-160 14-129 (134)
22 1rsy_A Synaptotagmin I; calciu 99.6 6.9E-15 2.4E-19 141.0 12.2 104 15-160 40-149 (152)
23 3fdw_A Synaptotagmin-like prot 99.6 5.4E-15 1.9E-19 141.0 11.4 120 1-162 1-135 (148)
24 1a25_A CALB, protein kinase C 99.6 9E-15 3.1E-19 139.6 12.7 107 12-161 26-139 (149)
25 3rdl_A Protein kinase C alpha 99.6 1E-14 3.4E-19 137.0 12.5 108 12-162 11-125 (137)
26 2q3x_A Regulating synaptic mem 99.6 8.4E-15 2.9E-19 143.3 12.5 108 12-161 25-139 (171)
27 3f04_A Synaptotagmin-1; C2A, c 99.6 6.6E-15 2.3E-19 139.5 11.4 103 15-159 32-140 (143)
28 2r83_A Synaptotagmin-1; C2A-C2 99.6 2.7E-14 9.4E-19 151.1 17.0 126 15-182 17-148 (284)
29 1rh8_A Piccolo protein; beta-s 99.6 3.9E-15 1.3E-19 140.8 9.0 107 12-160 13-137 (142)
30 2z0u_A WW domain-containing pr 99.6 4.2E-15 1.4E-19 143.0 8.4 104 15-160 41-154 (155)
31 2d8k_A Synaptotagmin VII; exoc 99.6 2.4E-14 8.1E-19 135.3 13.1 104 15-160 24-134 (141)
32 2bwq_A Regulating synaptic mem 99.5 2.4E-14 8.4E-19 132.9 11.8 101 16-159 17-128 (129)
33 1wfm_A Synaptotagmin XIII; C2 99.5 4.2E-14 1.4E-18 133.2 12.6 82 80-161 44-132 (138)
34 1v27_A Regulating synaptic mem 99.5 5.5E-14 1.9E-18 132.6 13.2 104 16-162 20-134 (141)
35 2chd_A Rabphilin-3A, exophilin 99.5 4.4E-14 1.5E-18 133.6 11.5 103 15-159 27-138 (142)
36 3fbk_A RGS3, RGP3, regulator o 99.5 7.7E-14 2.6E-18 133.8 12.8 107 13-162 23-138 (153)
37 1ugk_A Synaptotagmin IV, KIAA1 99.5 1.1E-13 3.8E-18 130.2 12.6 104 15-160 20-132 (138)
38 1w15_A Synaptotagmin IV; metal 99.5 3.2E-14 1.1E-18 136.4 8.8 103 15-161 28-138 (153)
39 3n5a_A Synaptotagmin-7; calciu 99.5 9E-14 3.1E-18 130.5 11.7 104 15-162 14-125 (138)
40 2dmg_A KIAA1228 protein; beta- 99.5 7.7E-14 2.6E-18 131.9 10.9 104 16-162 23-136 (142)
41 1tjx_A Similar to synaptotagmi 99.5 1.2E-13 4.2E-18 133.2 12.2 104 15-160 23-146 (159)
42 2enp_A B/K protein; C2 type 1, 99.5 5.4E-14 1.9E-18 133.8 9.6 111 16-163 25-142 (147)
43 2cm5_A Rabphilin-3A; protein t 99.5 1.8E-13 6.3E-18 133.0 13.0 91 15-147 35-133 (166)
44 1dqv_A Synaptotagmin III; beta 99.5 4.3E-13 1.5E-17 143.0 14.3 125 15-182 18-150 (296)
45 3l9b_A Otoferlin; C2-domain, b 99.5 4.1E-13 1.4E-17 124.3 12.1 101 80-183 37-142 (144)
46 2cjt_A UNC-13 homolog A, MUNC1 99.4 7.2E-13 2.5E-17 123.6 11.9 115 16-179 4-130 (131)
47 4gel_A Mitochondrial cardiolip 99.4 3.5E-13 1.2E-17 137.3 9.2 151 560-774 57-207 (220)
48 3jzy_A Intersectin 2; C2 domai 99.3 3.9E-12 1.3E-16 145.9 14.2 116 15-179 385-506 (510)
49 3nsj_A Perforin-1; pore formin 99.3 7.6E-12 2.6E-16 142.8 15.4 107 16-179 393-502 (540)
50 2cjs_A UNC-13 homolog A, MUNC1 99.3 7.2E-12 2.5E-16 121.7 12.8 66 80-149 32-99 (167)
51 3bxj_A RAS GTPase-activating p 99.3 2.4E-13 8.4E-18 154.4 1.9 127 13-186 7-162 (483)
52 1djx_A PLC-D1, phosphoinositid 99.3 8E-12 2.7E-16 145.7 14.2 120 15-180 495-623 (624)
53 3hsi_A Phosphatidylserine synt 99.3 1.6E-11 5.4E-16 138.0 11.7 149 241-461 257-421 (458)
54 2r83_A Synaptotagmin-1; C2A-C2 99.2 2.5E-11 8.6E-16 128.2 12.6 103 16-160 149-271 (284)
55 1cjy_A CPLA2, protein (cytosol 99.2 1.3E-11 4.5E-16 145.0 11.1 103 15-159 16-124 (749)
56 1xdp_A Polyphosphate kinase; P 99.2 1.2E-11 4.1E-16 144.3 10.6 131 564-774 350-492 (687)
57 1dqv_A Synaptotagmin III; beta 99.2 1.1E-11 3.7E-16 132.1 4.9 106 16-164 151-264 (296)
58 1yrk_A NPKC-delta, protein kin 99.0 6.3E-09 2.2E-13 93.5 14.4 89 80-180 27-124 (126)
59 1v0w_A Phospholipase D; hydrol 99.0 6.7E-10 2.3E-14 127.1 10.3 157 242-460 314-492 (506)
60 3pfq_A PKC-B, PKC-beta, protei 98.9 1.9E-09 6.6E-14 127.6 11.7 107 13-162 168-281 (674)
61 2enj_A NPKC-theta, protein kin 98.9 5.8E-09 2E-13 94.9 11.7 91 80-182 32-131 (138)
62 3qr0_A Phospholipase C-beta (P 98.9 7.5E-09 2.5E-13 123.0 14.0 114 15-181 648-771 (816)
63 3ohm_B 1-phosphatidylinositol- 98.9 4.7E-09 1.6E-13 125.3 12.2 95 80-181 742-845 (885)
64 2zkm_X 1-phosphatidylinositol- 98.9 7.7E-09 2.6E-13 123.5 12.9 113 15-180 676-798 (799)
65 2o8r_A Polyphosphate kinase; s 98.5 3E-07 1E-11 106.7 9.8 132 563-774 354-499 (705)
66 3qph_A TRMB, A global transcri 97.4 7.7E-05 2.6E-09 80.4 3.9 120 559-773 117-240 (342)
67 3qph_A TRMB, A global transcri 96.4 0.0031 1.1E-07 67.8 5.8 51 241-309 118-168 (342)
68 2f5t_X Archaeal transcriptiona 93.9 0.06 2.1E-06 54.4 5.6 49 241-306 9-57 (233)
69 2c1l_A Restriction endonucleas 92.7 0.34 1.2E-05 48.2 8.6 41 709-751 102-145 (358)
70 2c1l_A Restriction endonucleas 88.0 2.7 9.4E-05 41.8 10.2 100 284-448 50-149 (358)
71 3l4c_A Dedicator of cytokinesi 78.5 17 0.00058 35.8 11.5 40 92-131 77-119 (220)
72 2f5t_X Archaeal transcriptiona 68.0 11 0.00037 37.7 7.4 51 559-629 8-58 (233)
73 2wxf_A Phosphatidylinositol-4, 63.4 30 0.001 41.7 11.2 69 80-148 235-325 (940)
74 2yrb_A Protein fantom; beta sa 62.4 46 0.0016 30.9 9.9 97 83-181 45-150 (156)
75 1q32_A TDP1P;, tyrosyl-DNA pho 60.0 2.7 9.2E-05 47.4 1.3 42 707-748 427-488 (544)
76 3hhm_A Phosphatidylinositol-4, 56.2 40 0.0014 41.1 10.5 68 80-148 375-456 (1091)
77 1e7u_A Phosphatidylinositol 3- 44.7 70 0.0024 38.6 10.1 69 80-148 238-331 (961)
78 1jy1_A TDP1, tyrosyl-DNA phosp 33.8 13 0.00043 41.3 1.3 33 363-400 115-147 (464)
79 2y3a_A Phosphatidylinositol-4, 29.9 42 0.0014 41.0 5.0 50 80-129 371-429 (1092)
80 3sq7_A Tyrosyl-DNA phosphodies 24.7 27 0.00093 38.5 1.9 45 708-752 351-415 (470)
No 1
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=5.5e-38 Score=353.18 Aligned_cols=363 Identities=14% Similarity=0.106 Sum_probs=222.9
Q ss_pred CCCCeeEEeecccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHH
Q 004061 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (776)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~ 288 (776)
..+|.|++|.+| +++|++++++|++|+++|+|++|+|.+| +.| ..|.
T Consensus 24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~d-----------~~g--~~l~ 70 (458)
T 3hsi_A 24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQKD-----------EAG--QEIL 70 (458)
T ss_dssp CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCSS-----------HHH--HHHH
T ss_pred ccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEecC-----------cHH--HHHH
Confidence 458999999998 8899999999999999999999999886 223 7999
Q ss_pred HHHHHHHhc--CCEEEEEEecCC-------CccCccccccCCccccCcHHHHhhhcCCC--ceEE--eccCCCCcccccc
Q 004061 289 ELLKYKSEE--GVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHSS--VNCV--LAPRYASSKLSYF 355 (776)
Q Consensus 289 ~~L~~aa~r--GV~VriLv~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~g--v~v~--~~~~~~~~~~~~~ 355 (776)
++|.+||+| ||+||||+ |+. |+.... .+..+...|.++| |+|. .++ .|..
T Consensus 71 ~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~~----------~~~~~~~~L~~~g~nv~v~~~~f~-~p~~----- 133 (458)
T 3hsi_A 71 DEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKSA----------TNADWYCEQRQTYQLPDDPNMFFG-VPIN----- 133 (458)
T ss_dssp HHHHHHHHHSTTCEEEEEE-ETTGGGSCCC-----C----------CHHHHHHHHHHHHTCTTCCCCEEE-ECSS-----
T ss_pred HHHHHHHhcCCCCEEEEEE-ECcccccccccccccc----------ccHHHHHHHHhhCCCceEeeeecC-Cccc-----
Confidence 999999999 99999997 983 333210 1134555665555 7776 543 1211
Q ss_pred hhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCcee
Q 004061 356 KQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHD 435 (776)
Q Consensus 356 ~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D 435 (776)
....+.|+|+|++|||++ + ++||+||+++++... .....|+|
T Consensus 134 ---~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~drd 175 (458)
T 3hsi_A 134 ---TREVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDRY 175 (458)
T ss_dssp ---SSGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECCE
T ss_pred ---cccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcchh
Confidence 113467899999999997 8 556699999554211 11235888
Q ss_pred eeeEEeChHHHHHHHHH--HHHhhhcccchhhhhhhcc-cccccccchhhccccccccCccccccCCCccc-cCCCCccc
Q 004061 436 LHCRLDGPAAYDVLINF--EQRWRKATKLTELTFKFKR-VSHWRDDYLIKIGRISWILSPELSLKTNGTTI-VPRDDNVV 511 (776)
Q Consensus 436 ~~v~i~Gpav~~l~~~F--~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~ 511 (776)
+.+.||.+.|....| ...|+...-.. +...+.. ...|... ...+.. .+.+. ..+ +|.
T Consensus 176 --~~i~g~~~~D~~~~~~~~~~~~g~~v~~-l~~~~~~~~~~~~~~-~~~~~~---~l~~~-------~~~~~~~----- 236 (458)
T 3hsi_A 176 --QKITHAELADSMVNFINDYLLDFSAVYP-LDVTNRPRTKEIRGN-IRAYRK---DLAQN-------GEYSLKS----- 236 (458)
T ss_dssp --EEEECHHHHHHHHHHHHHTTCCTTTCEE-SSSSCCCCGGGTHHH-HHHHHH---HHHHH-------CCCCCSS-----
T ss_pred --hhhcCchHHHHHHHHHHhhhhcCccchh-hHHHhcccchhhHHH-HHHHHH---hhhhc-------ccccccc-----
Confidence 448999999999888 44565322110 0000000 0001000 000000 00000 000 110
Q ss_pred ccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccccCCccchhhHHHHHHHHHHhccceEEEecccccccCCCC
Q 004061 512 RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAW 591 (776)
Q Consensus 512 ~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~ 591 (776)
...+...+++.... + |.. .+..+...++++|.+|+++|+|+||||+++
T Consensus 237 -----~~~~~~~~~v~p~~--~-----~~~----------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~---- 284 (458)
T 3hsi_A 237 -----AVKLPNVLSVSPLF--G-----LGA----------------SGNELNQVIEDLFLQVQKKLVICTPYFNFP---- 284 (458)
T ss_dssp -----CBSSCSSCEEEEEE--E-----ESS----------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCC----
T ss_pred -----cCCCCceEEEecCC--C-----CCC----------------chhHHHHHHHHHHHhcccEEEEEEeccCCC----
Confidence 00011123333211 1 110 135788999999999999999999999953
Q ss_pred CccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCC----CCCcchhhhhHHHHHHHHHHHHH-------HHH
Q 004061 592 PSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD----PKTNTVQEILFWQSQTMQMMYSV-------VAQ 660 (776)
Q Consensus 592 p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~----~d~~~~~~~~~~~~~t~~~~~~~-------l~~ 660 (776)
. .+..++..+++ +||+|+||+|.....+ ++.+ ++.++...+ .|.. -++
T Consensus 285 --~-----------~~~~aL~~Aa~--rGV~VrIi~~~~~and~y~~~~~~----~~~~~~~~~--lye~~~~~f~~~~~ 343 (458)
T 3hsi_A 285 --R-----------TLQHKIATLLE--NGKRVEIIVGDKVANDFYIPPEQP----FKMAGALPY--LYESNLRRFCEKFE 343 (458)
T ss_dssp --H-----------HHHHHHHHHHT--TTCEEEEEEECGGGSTTCCCTTSC----CCGGGGHHH--HHHHHHHHHHHHTH
T ss_pred --H-----------HHHHHHHHHHH--CCCeEEEEECCccccCCccCCcch----hhhhcchHH--HHHHhhhhhHHHHH
Confidence 2 23344444544 5699999999753111 2222 223333221 1111 124
Q ss_pred HHHhcc-CCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEeeeEEEEccccccCcCCCCCC
Q 004061 661 ELREMQ-VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSK 739 (776)
Q Consensus 661 ~L~~~G-v~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVDd~~~~IGSaNld~RS~~~n~ 739 (776)
.|.++| +. +++|++ .+.++|+|+|||||++++|||+|||.||+. +
T Consensus 344 ~l~~~G~i~------V~i~~~--------------------------~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~--l 389 (458)
T 3hsi_A 344 TQIESGQLV------VRLWRD--------------------------GDNTYHLKGVWVDDRYILLTGNNLNPRAWR--L 389 (458)
T ss_dssp HHHHHTSEE------EEEECB--------------------------TTBEECCCEEEETTTEEEEECCCCSHHHHH--T
T ss_pred HHHhCCCeE------EEEEec--------------------------CCCceeEEEEEECCeEEEecCCCCCcchhh--h
Confidence 566777 21 223532 146999999999999999999999999998 5
Q ss_pred cccceeeeeCCC--cchhcccCCCCchhHHHHHhhhc
Q 004061 740 DTEIAMGSYQPH--HTWARKLKHPHGQEVTLVRASWH 774 (776)
Q Consensus 740 d~Ei~v~i~d~~--~~~~~~~~~~~~~i~~~r~~lw~ 774 (776)
|+|++++|+|++ ++ .++.+.+.++|.
T Consensus 390 N~E~~~~i~~~~~~l~---------~~l~~~f~~~~~ 417 (458)
T 3hsi_A 390 DAENGLLIYDPQQQLL---------AQVEKEQNQIRQ 417 (458)
T ss_dssp CEEEEEEEECTTCSSH---------HHHHHHHHHHHT
T ss_pred CceeEEEEeCCcHHHH---------HHHHHHHHHHHH
Confidence 599999999996 44 256666666665
No 2
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=2.7e-38 Score=363.11 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=113.0
Q ss_pred cchHHHHHHHHHhccceEEEEEEee-cccceeeecCCCCCCCCCCCcHHHHHHHHHhcC--CEEEEEEecCCCccCcccc
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV 317 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~-~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rG--V~VriLv~D~~gs~~~~~~ 317 (776)
+++|++|+++|++||++|+|++|+| .++ ..| ..|.++|++||+|| |+||||+ |++|+.....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d-----------~~g--~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~- 129 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNG-----------AFQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV- 129 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH-----------HHH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCC-----------hHH--HHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc-
Confidence 7889999999999999999999994 654 112 79999999999999 9999997 8876543110
Q ss_pred ccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcc
Q 004061 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (776)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r 397 (776)
.+..+.+.|+++|+++... .+.....+ .. ....+.|||+|++|||++ +||+||+|+++++
T Consensus 130 --------~~~~~~~~L~~~g~~~~~~--~~~~~~~~-~~-~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 130 --------IPSKYRDELTAKLGKAAEN--ITLNVASM-TT-SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp --------HHHHHHHHHHHHHGGGGGG--EEEEEEEE-CS-BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred --------CCHHHHHHHHhcccceeec--Cccccccc-cc-cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 1235566677655543110 00000000 00 001124899999999999 9999999997556
Q ss_pred CCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcc
Q 004061 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (776)
Q Consensus 398 ~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~ 460 (776)
|.+. ..+|||++++++||+|.+++..|.++|+...
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~ 224 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTC 224 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhc
Confidence 6431 1379999999999999999999999998754
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.93 E-value=2.6e-25 Score=258.85 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004061 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~-----sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~ 315 (776)
.+.|+.++++|++|++ +|+|+.|.+.++ ..|.++|++||+|||+|+||+ |..+....
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~d----------------~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~- 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAKD----------------SRIIDSMIHAAHNGKKVTVVV-ELQARFDE- 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCTT----------------CHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecCc----------------HHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence 5668999999999997 999987776554 799999999999999999997 88763221
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceE---EEEcccc
Q 004061 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGID 392 (776)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~---a~vGG~N 392 (776)
..+..+.+.|.++||+++++.. .+++|+|++|||++- ++.+ +++||.|
T Consensus 408 ---------~~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~re----~~~i~~~a~iGS~N 458 (687)
T 1xdp_A 408 ---------EANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRKE----NGEVVRYAHIGTGN 458 (687)
T ss_dssp ---------TTTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEEE----TTEEEEEEEEESSC
T ss_pred ---------hhHHHHHHHHHHCCCEEEEecC----------------CccccceEEEEEecc----CCeEEEEEEEeCCc
Confidence 1123456778889999986421 235999999999520 0015 9999999
Q ss_pred CCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHhhhc
Q 004061 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (776)
Q Consensus 393 i~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~~W~~~ 459 (776)
+++..+ ..|+|+++++.|| ++.++.+.|..+|..+
T Consensus 459 ~d~rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s 494 (687)
T 1xdp_A 459 FNEKTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPY 494 (687)
T ss_dssp SCTTGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTT
T ss_pred CCcchh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhc
Confidence 988222 3589999999987 5899999999999764
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.91 E-value=8.9e-24 Score=243.96 Aligned_cols=274 Identities=13% Similarity=0.124 Sum_probs=185.8
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004061 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~-----sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~ 315 (776)
.+.|+.++++|++|++ +|.++.|++..+ ..|.++|++||++||+|++|+ | .++...
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~d----------------s~Iv~ALi~AA~rGv~V~vLv-e-l~arfd- 411 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAEN----------------SSIISALEAAAQSGKKVSVFV-E-LKARFD- 411 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSC----------------CHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcCC----------------HHHHHHHHHHHHCCCEEEEEE-e-CCCCcc-
Confidence 6779999999999999 999999988654 799999999999999999997 8 655331
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccC--CCCCCcceEEEEccccC
Q 004061 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL 393 (776)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~--~~~~~~~~~a~vGG~Ni 393 (776)
...+..+.+.|+++||+|.+. . .++++|+|++|||++ -.+ +=...+.+|.-|+
T Consensus 412 --------ee~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g-~~~~y~~igtGN~ 466 (705)
T 2o8r_A 412 --------EENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGE-RPQGIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSS-CCCEEEEEESSCS
T ss_pred --------hhhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCC-ceeEEEeccccce
Confidence 112346788899999998752 1 245799999999986 111 1122455565565
Q ss_pred CCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHhhhcccchhhhhhhccc
Q 004061 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV 472 (776)
Q Consensus 394 ~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~~W~~~~~~~~~~~~~~~~ 472 (776)
.+. ...-|.|+++...+| ++.+++..|...|......
T Consensus 467 n~~--------------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~~---------- 504 (705)
T 2o8r_A 467 NET--------------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDPEPA---------- 504 (705)
T ss_dssp SCC--------------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCCS----------
T ss_pred eee--------------------------------EEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCCC----------
Confidence 441 113588999999986 5699999998777531100
Q ss_pred ccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCCeEEEEEeeccCCCCCCCCCChhhhhcccccc
Q 004061 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (776)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~g~~~~~P~~~~~~~~~~~~~ 552 (776)
.. .|++-+ |...
T Consensus 505 ------------------------------------------------~~-~~l~~s---------P~~~---------- 516 (705)
T 2o8r_A 505 ------------------------------------------------RF-SRLLVA---------RYNM---------- 516 (705)
T ss_dssp ------------------------------------------------CC-SSCEET---------TTTH----------
T ss_pred ------------------------------------------------Cc-eEEEEC---------CchH----------
Confidence 00 122221 3321
Q ss_pred cCCccchhhHHHHHHHHHHhccc----eEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEec
Q 004061 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (776)
Q Consensus 553 ~~~~~~~~~i~~a~~~lI~~Ak~----~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp 628 (776)
...+...+...|.+|++ +|+|.++| + |+. .+..++ ..|.+ +||+|+||+-
T Consensus 517 ------~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l------~D~---------~ii~aL--~~As~--~GV~V~LIVR 570 (705)
T 2o8r_A 517 ------GEAITNLIEREIENVKRGKRGYMLLKMNG-L------QDK---------NVITQL--YRASE--AGVEIDLIVR 570 (705)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCCEEEEEESC-B------CCH---------HHHHHH--HHHHH--TTCEEEEEES
T ss_pred ------HHHHHHHHHHHHHHHhcCCCCEEEEEcCC-C------CCH---------HHHHHH--HHHHH--CCCeEEEEEc
Confidence 46789999999999999 99999998 4 333 334444 44444 5599999993
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceec
Q 004061 629 MWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFM 708 (776)
Q Consensus 629 ~~~~g~~d~~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (776)
..-.-.|.. . +.+ .+ .+..+ ++ .
T Consensus 571 GiC~L~Pgv----------------------~-~sd-ni--------~V~Si-----------------------vg--r 593 (705)
T 2o8r_A 571 GICCLVPDM----------------------P-QSR-NI--------RVTRL-----------------------VD--M 593 (705)
T ss_dssp SCBCSCCSS----------------------G-GGT-TE--------EEEEC-----------------------CS--S
T ss_pred cccccCCCC----------------------C-CCC-Ce--------EEEee-----------------------HH--H
Confidence 100000000 0 000 11 11111 01 1
Q ss_pred eEEeeeeEEE---eeeEEEEccccccCcCCCCCCcccceeeeeCCCcc
Q 004061 709 IYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (776)
Q Consensus 709 ~~lHsK~~IV---Dd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~ 753 (776)
-.-|+|+++. ||++++||||||+.|||. ++.|+++.|+|++++
T Consensus 594 ~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~~ 639 (705)
T 2o8r_A 594 YLEHSRIWCFHNGGKEEVFISSADWMKRNLY--NRIETACPVLDPTLR 639 (705)
T ss_dssp SEECCCEEEECGGGSCEEEEESCCBCHHHHH--TSBCEEEECCSHHHH
T ss_pred HHhcCEEEEEECCCCcEEEEeccccchhhhh--heeEEEEEEcCHHHH
Confidence 2448888888 889999999999999999 559999999999865
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.79 E-value=1.6e-19 Score=180.88 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=103.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
++.|..|+++|++|+++|+|++|+|.. ..|.++|.+|++|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 778999999999999999999998854 589999999999999999997 8642211
Q ss_pred CccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCC
Q 004061 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (776)
.......|.++||+++.+... ..+|+|++|||++ ++++||+|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~~~----------------~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQDL----------------GYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECCSS----------------SCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCccccccc----------------ccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 113456788899999864321 2489999999999 999999999883331
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHhhhcc
Q 004061 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (776)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~~W~~~~ 460 (776)
..++..+.+..+ +|..+++.|..+|+...
T Consensus 149 -------------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~ 178 (196)
T 4ggj_A 149 -------------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFD 178 (196)
T ss_dssp -------------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 122555556654 68899999999998754
No 6
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=166.91 Aligned_cols=130 Identities=22% Similarity=0.374 Sum_probs=106.0
Q ss_pred ceeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC
Q 004061 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (776)
Q Consensus 10 ~~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~ 89 (776)
..+..+.|.|+|+|++|++|+++|..++++ +|.. ....+||||+|.++
T Consensus 22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~------------------------------~~g~sDPYv~v~l~ 69 (157)
T 2fk9_A 22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK------------------------------GHQLLDPYLTVSVD 69 (157)
T ss_dssp --CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS------------------------------SCCCCCEEEEEEET
T ss_pred chhccCccEEEEEEEEEECCCCcccccccc--cccc------------------------------CCCCCCeEEEEEEC
Confidence 346689999999999999999887543211 2210 11238999999999
Q ss_pred CeeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccC----ceeEEEEEccCCCC
Q 004061 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG 164 (776)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~----~~~~~w~~l~~~~~ 164 (776)
+....||+++++|.||+|||+|.|.+.. ...|+|+|||++.++ +++||.+.|++.++..+ +..+.|++| .
T Consensus 70 ~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L-~--- 144 (157)
T 2fk9_A 70 QVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL-E--- 144 (157)
T ss_dssp TEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEEC-B---
T ss_pred CEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEEC-C---
Confidence 8887899999999999999999999865 347999999999998 89999999999998854 678999999 2
Q ss_pred CCCCCCceEEEEEEEE
Q 004061 165 SPPKPGASIQLELKFT 180 (776)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (776)
+.|+|+|+++|.
T Consensus 145 ----~~G~i~l~l~~~ 156 (157)
T 2fk9_A 145 ----PEGKVFVVITLT 156 (157)
T ss_dssp ----SSCEEEEEEEEC
T ss_pred ----CCcEEEEEEEEE
Confidence 379999999874
No 7
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=156.76 Aligned_cols=126 Identities=28% Similarity=0.475 Sum_probs=108.1
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
..|.|.|+|++|++|+.++. +. +||||+|.+.+.. .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~ 40 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K 40 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence 57899999999999998876 54 8999999998765 7
Q ss_pred eeccccCCCCCeeccEEEEEecCC----CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEE---ccCCCCCC
Q 004061 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP 166 (776)
Q Consensus 95 ~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~---l~~~~~~~ 166 (776)
||++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.|++.++..+...+.|++ +....+.
T Consensus 41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~- 119 (140)
T 2dmh_A 41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ- 119 (140)
T ss_dssp ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC-
T ss_pred EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC-
Confidence 999999999999999999998753 456999999999997 8999999999999988888889988 6554443
Q ss_pred CCCCceEEEEEEEEecCCCC
Q 004061 167 PKPGASIQLELKFTPCDKNP 186 (776)
Q Consensus 167 ~~~~g~i~l~l~~~p~~~~~ 186 (776)
...|+|+++++|.|....+
T Consensus 120 -~~~G~l~l~~~~~p~~~~~ 138 (140)
T 2dmh_A 120 -DTGATIDLVIGYDPPSGPS 138 (140)
T ss_dssp -EEEEEEEEEEEECCCBSSS
T ss_pred -CCCCEEEEEEEEECCCCCC
Confidence 2569999999999965543
No 8
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.74 E-value=1.5e-17 Score=156.57 Aligned_cols=130 Identities=17% Similarity=0.401 Sum_probs=105.6
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (776)
..+.|.|+|+|++|++|++++..+++ .|+. +.+...+||||+|.+++..
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~---~~g~----------------------------~~~~~~~DPyv~v~l~~~~ 50 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRD---AVGP----------------------------RPQTFLLDPYIALNVDDSR 50 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CCS----------------------------SCCCCCCCEEEEEEETTEE
T ss_pred cccceEEEEEEEeCcCCCCccccccc---cccc----------------------------ccCCcCcCcEEEEEECCeE
Confidence 45789999999999999987754320 0110 0012238999999998887
Q ss_pred eeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccC--ceeEEEEEccCCCCCCCCC
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKP 169 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~--~~~~~w~~l~~~~~~~~~~ 169 (776)
..+|++++++.||+|||+|.|.+..+ ..|+|+|||++.++ +++||.+.|++.++..+ ...+.|+++ .+
T Consensus 51 ~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~ 121 (136)
T 1gmi_A 51 IGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------EP 121 (136)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------BS
T ss_pred eeeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc--------CC
Confidence 78999999999999999999998766 67999999999987 89999999999998853 346899988 24
Q ss_pred CceEEEEEEEEec
Q 004061 170 GASIQLELKFTPC 182 (776)
Q Consensus 170 ~g~i~l~l~~~p~ 182 (776)
.|+|+++++|.+.
T Consensus 122 ~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 122 EGKVYVIIDLSGS 134 (136)
T ss_dssp SCEEEEEEEEEEE
T ss_pred CeEEEEEEEEEec
Confidence 7999999999874
No 9
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.73 E-value=2.8e-17 Score=157.78 Aligned_cols=124 Identities=21% Similarity=0.370 Sum_probs=100.0
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..|.|+|+|++|++|+.++..+. +||||+|.+..
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 55 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG 55 (153)
T ss_dssp TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46889999999999998876655 89999999963
Q ss_pred -eeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCce------eEEEEEccCC
Q 004061 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAP 162 (776)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~------~~~w~~l~~~ 162 (776)
....+|++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||.+.|++.++..+.. ...|++|...
T Consensus 56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~ 135 (153)
T 3b7y_A 56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135 (153)
T ss_dssp EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence 2567999999999999999999999887777999999999987 8999999999999885443 2589998433
Q ss_pred CCCCCCCCceEEEEEEEEe
Q 004061 163 SGSPPKPGASIQLELKFTP 181 (776)
Q Consensus 163 ~~~~~~~~g~i~l~l~~~p 181 (776)
.+ .....|+|+++++|.|
T Consensus 136 ~~-~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 136 SH-KSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ST-TCCCCSEEEEEEEECC
T ss_pred cC-CCCcceEEEEEEEEeC
Confidence 32 2357899999999987
No 10
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.72 E-value=1.4e-16 Score=152.09 Aligned_cols=122 Identities=23% Similarity=0.449 Sum_probs=103.9
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (776)
..+.|.|.|+|++|++|+.++..+. +||||.+.+++..
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 50 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKTK 50 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE
T ss_pred cccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCEE
Confidence 4578999999999999999887665 8999999997755
Q ss_pred eeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCC-----------C-CceeEEEEccccccccCceeEEEEEcc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDII 160 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~-----------~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (776)
.+|++++++.||.|||+|.|.+..+...|.|+|||++.+ + +++||.+.|++.++. ...+.|++|.
T Consensus 51 -~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~ 127 (148)
T 3kwu_A 51 -KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLD 127 (148)
T ss_dssp -EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECB
T ss_pred -EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcc
Confidence 699999999999999999999988877899999999985 4 999999999999994 4567999995
Q ss_pred CCCCCCCCCCceEEEEEEEE
Q 004061 161 APSGSPPKPGASIQLELKFT 180 (776)
Q Consensus 161 ~~~~~~~~~~g~i~l~l~~~ 180 (776)
+.+......|+|+|+++|.
T Consensus 128 -~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 128 -KRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp -CSSTTCCCCCEEEEEEEEE
T ss_pred -cCCCCCCCceEEEEEEEEE
Confidence 3333334679999999985
No 11
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.72 E-value=2.7e-17 Score=154.55 Aligned_cols=123 Identities=24% Similarity=0.499 Sum_probs=107.4
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
..|.|+|+|++|++|+.++..+. +||||+|.+.+.. .
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~ 44 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD-Q 44 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-E
T ss_pred CcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-c
Confidence 57999999999999999886655 8999999998865 5
Q ss_pred eecccc-CCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEcccccc-ccCceeEEEEEccCCCCCCCCCCc
Q 004061 95 RTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPGA 171 (776)
Q Consensus 95 ~T~~~~-~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~-~~~~~~~~w~~l~~~~~~~~~~~g 171 (776)
+|++++ ++.||.|||+|.|.+......|+|+|||++.++ +++||.+.|++.++ ..++....|++|. ..+ +..|
T Consensus 45 kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~G 120 (136)
T 1wfj_A 45 KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYKG 120 (136)
T ss_dssp ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEEE
T ss_pred eeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccCE
Confidence 999998 899999999999999987777999999999987 89999999999999 4566678999996 322 4689
Q ss_pred eEEEEEEEEecCC
Q 004061 172 SIQLELKFTPCDK 184 (776)
Q Consensus 172 ~i~l~l~~~p~~~ 184 (776)
+|+++++|.|...
T Consensus 121 ~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 121 EIWVALSFKPSGP 133 (136)
T ss_dssp EEEEEEEEEECCS
T ss_pred EEEEEEEEEeCCC
Confidence 9999999999754
No 12
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.72 E-value=4.7e-17 Score=152.41 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=106.6
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (776)
.-..|.|+|+|++|++|+.++..+. +||||+|.+.+..
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 46 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLLELGNDR 46 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEEEETTEE
T ss_pred cCCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEEEECCEE
Confidence 3467999999999999998886665 8999999998865
Q ss_pred eeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g 171 (776)
.+|++++++.||.|||+|.|.+..+...|.|+|||++.++ +++||.+.|++.++..+. ..|++|....++. ...|
T Consensus 47 -~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G 122 (133)
T 2ep6_A 47 -LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKG 122 (133)
T ss_dssp -EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSS
T ss_pred -EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccce
Confidence 5999999999999999999999887777999999999997 899999999999997654 5899996544332 5789
Q ss_pred eEEEEEEEEe
Q 004061 172 SIQLELKFTP 181 (776)
Q Consensus 172 ~i~l~l~~~p 181 (776)
+|+++++|..
T Consensus 123 ~i~l~i~~~~ 132 (133)
T 2ep6_A 123 VIYLEMDLIY 132 (133)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999999875
No 13
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.71 E-value=4.3e-17 Score=156.68 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=108.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
+++++.++++|++|+++|+|++|+|.+ ..|.++|.+|++|||+||||+ |..++...
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------ 68 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGR------ 68 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC-----------------HHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence 467899999999999999999998832 589999999999999999997 77654210
Q ss_pred CccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEEEccccCCCccCCC
Q 004061 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (776)
......+.|.++|++++.+... .++|.|++|||++ ++++||+|++...+
T Consensus 69 -----~~~~~~~~L~~~gv~v~~~~~~----------------~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 69 -----ASIAAMNYIANSGIPLRTDSNF----------------PIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp -----HHHHHHHHHHHTTCCEEEECSS----------------SCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred -----ccHHHHHHHHHCCCeEEEcCCc----------------ccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 1234667788899999865321 1489999999999 99999999987222
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh--HHHHHHHHHHHHhhhcc
Q 004061 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKAT 460 (776)
Q Consensus 401 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp--av~~l~~~F~~~W~~~~ 460 (776)
..|++..+.+.|+ .+.++...|.+.|..+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2467899999994 78999999999998754
No 14
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.70 E-value=1.2e-16 Score=157.19 Aligned_cols=124 Identities=21% Similarity=0.371 Sum_probs=98.2
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-----
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (776)
.|.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 44 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI 44 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence 5899999999999998887665 89999999964
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCcee-E-----EEEEccCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS 163 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~-~-----~w~~l~~~~ 163 (776)
..+.+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||.+.|+|.++..+... + .||+|....
T Consensus 45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~ 124 (176)
T 3m7f_B 45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS 124 (176)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence 1457999999999999999999999877778999999999997 89999999999999865332 2 799994332
Q ss_pred CCCCCCCceEEEEEEEEec
Q 004061 164 GSPPKPGASIQLELKFTPC 182 (776)
Q Consensus 164 ~~~~~~~g~i~l~l~~~p~ 182 (776)
. ..+..|+|+|+++|.|.
T Consensus 125 ~-~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 125 H-KSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp T-TCCCCSEEEEEEEECC-
T ss_pred C-CCccCEEEEEEEEEEeC
Confidence 2 33568999999999997
No 15
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.68 E-value=9.8e-17 Score=163.65 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
.+.++.|+++|++|+++|+|++|+|.. ..|.++|.+||+|||+||||+ |..++...
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------ 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK------ 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence 678999999999999999999998854 689999999999999999997 98765431
Q ss_pred CccccCcHHHHhhhcCCCceEEeccCCCC--cccccchh--ccccceecccceEEEEccCCCCCCcceEEEEccccCCCc
Q 004061 321 GVMATHDEETKKFFKHSSVNCVLAPRYAS--SKLSYFKQ--QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (776)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~--~~~~~~~~--~~~~~~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~ 396 (776)
......+..+++.+........ .+...+.. ...+.+.++|+|++|+|++ ++++||+|++..
T Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~ 177 (220)
T 4gel_A 113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL 177 (220)
T ss_dssp -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred -------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence 1233445556666654322111 01111110 0123456789999999998 999999999873
Q ss_pred cCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHhhhcc
Q 004061 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (776)
Q Consensus 397 r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gpav~~l~~~F~~~W~~~~ 460 (776)
.+ ...|.++.+...+++|.++++.|.+.|+...
T Consensus 178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~ 210 (220)
T 4gel_A 178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFA 210 (220)
T ss_dssp HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSE
T ss_pred cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 22 1357788888888999999999999998643
No 16
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.67 E-value=2.5e-16 Score=145.87 Aligned_cols=118 Identities=25% Similarity=0.427 Sum_probs=97.6
Q ss_pred ceEEEEEEEEeecCCCC---CCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--
Q 004061 16 HGDLDLKIIRARRLPNM---DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (776)
.|.|.|+|++|++|+.+ +..+. +||||++.+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 39 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTTP 39 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC------------------------------------------CCEEEEEECTTST
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC------------------------------------------CCCEEEEEEccCC
Confidence 47899999999999975 32333 89999999975
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCCCCCCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~ 169 (776)
....||++++++.||+|||+|.|.+..+ ...|.|+|||++.+++++||.+.+++.++..+.....|++|. + ..
T Consensus 40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~-~-----~~ 113 (126)
T 1rlw_A 40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-Q-----VT 113 (126)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-T-----TE
T ss_pred CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcC-C-----Cc
Confidence 3567999999999999999999999644 456999999999888999999999999999888899999993 2 23
Q ss_pred CceEEEEEEEEe
Q 004061 170 GASIQLELKFTP 181 (776)
Q Consensus 170 ~g~i~l~l~~~p 181 (776)
.|.|++.+...|
T Consensus 114 ~g~i~~~le~~~ 125 (126)
T 1rlw_A 114 EMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEEeCC
Confidence 566776665443
No 17
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.65 E-value=7.7e-16 Score=150.89 Aligned_cols=126 Identities=19% Similarity=0.310 Sum_probs=102.7
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (776)
....+.|.|+|++|++|+..+..+. +||||+|.+.+ .
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~~~-~ 68 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDG-Q 68 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETT-E
T ss_pred cCCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEECC-E
Confidence 4578899999999999985443333 89999999988 5
Q ss_pred eeeeccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccC-----ceeEEEEEccCCCCCC
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-----ELISRWYDIIAPSGSP 166 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~-----~~~~~w~~l~~~~~~~ 166 (776)
..||++++++.||+|||+|.|.+. +...|.|+|||++.++ +++||.+.|++.++..+ +....|++|....+ .
T Consensus 69 ~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~ 146 (173)
T 2nq3_A 69 SKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-P 146 (173)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-T
T ss_pred EeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-C
Confidence 579999999999999999999985 4667999999999997 89999999999998642 12367999854432 3
Q ss_pred CCCCceEEEEEEEEecC
Q 004061 167 PKPGASIQLELKFTPCD 183 (776)
Q Consensus 167 ~~~~g~i~l~l~~~p~~ 183 (776)
....|+|.+.+.|++..
T Consensus 147 ~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 147 TETIGDLSICLDGLQLE 163 (173)
T ss_dssp TSEEEEEEEEEESEECC
T ss_pred CcccEEEEEEEeeeecc
Confidence 35689999999999873
No 18
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.65 E-value=1.8e-15 Score=141.38 Aligned_cols=120 Identities=19% Similarity=0.357 Sum_probs=98.8
Q ss_pred eEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-eeeee
Q 004061 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (776)
Q Consensus 17 g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~~~ 95 (776)
..|+|+|++|++|++++..+. +||||+|.+.+ ....+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k 42 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS 42 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence 468999999999999887665 89999999965 45679
Q ss_pred eccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCC----CceeEEEEccccccc-cCceeEEEEEccCCC-CCCCCC
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIA-TGELISRWYDIIAPS-GSPPKP 169 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~----~~~iG~~~i~l~~~~-~~~~~~~w~~l~~~~-~~~~~~ 169 (776)
|++++++.||+|||+|.|.+..+. .|.|+|||++.++ +++||.+.|++.++. .+.....|++|.... ..+...
T Consensus 43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~ 121 (132)
T 3pyc_A 43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121 (132)
T ss_dssp CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence 999999999999999999998765 5999999999885 699999999999883 334445889985432 223356
Q ss_pred CceEEEEEEE
Q 004061 170 GASIQLELKF 179 (776)
Q Consensus 170 ~g~i~l~l~~ 179 (776)
.|+|.+++++
T Consensus 122 ~G~i~v~l~~ 131 (132)
T 3pyc_A 122 RGQIVVSLQT 131 (132)
T ss_dssp CSEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 8999999875
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.62 E-value=1.1e-15 Score=146.82 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcc
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (776)
.++...++++|.+|+++|+|+++||.. ..+...+.++++ |||+|+||++... +..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a~~--rGV~Vril~~~~~----~~~- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKK--RGVDVKIVIDERG----NTG- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHH--TTCEEEEEEESTT----CCS-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHHHH--CCCEEEEEEeCcc----ccc-
Confidence 467899999999999999999999852 134455556655 4599999999632 110
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEe
Q 004061 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (776)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVD 719 (776)
...+. ..+.|.+.|+++ ++|. ....+|+|++|||
T Consensus 68 ------~~~~~-------~~~~L~~~gv~v------~~~~---------------------------~~~~~H~K~~iiD 101 (155)
T 1byr_A 68 ------RASIA-------AMNYIANSGIPL------RTDS---------------------------NFPIQHDKVIIVD 101 (155)
T ss_dssp ------HHHHH-------HHHHHHHTTCCE------EEEC---------------------------SSSCCCCCEEEET
T ss_pred ------cccHH-------HHHHHHHCCCeE------EEcC---------------------------CcccccceEEEEC
Confidence 11222 256778889875 1221 0247899999999
Q ss_pred eeEEEEccccccCcCCCCCCcccceeeeeCC-CcchhcccCCCCchhHHHHHhhhcc
Q 004061 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQP-HHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~-~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
++++++||+||+.+|+. .+.|+++.+.++ +++. .+.+++.++|..
T Consensus 102 ~~~~~iGS~N~~~~~~~--~n~E~~~~i~~~~~l~~---------~~~~~f~~~w~~ 147 (155)
T 1byr_A 102 NVTVETGSFNFTKAAET--KNSENAVVIWNMPKLAE---------SFLEHWQDRWNQ 147 (155)
T ss_dssp TTEEEEESCCBSHHHHH--TSCEEEEEEESCHHHHH---------HHHHHHHHHHHT
T ss_pred CCEEEEECCCCCccccc--cCcccEEEEcCcHHHHH---------HHHHHHHHHHHh
Confidence 99999999999999998 449999999994 6543 688889999974
No 20
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.62 E-value=3.1e-16 Score=156.88 Aligned_cols=132 Identities=17% Similarity=0.097 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcc
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (776)
.+....++++|++||++|+|+..+|.. ..++.+|.+|++ |||+|+||++......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~------------------~~i~~aL~~aa~--rGV~Vrii~D~~~~~~----- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS------------------PQLGRAVQLLHQ--RGVRVRVITDCDYMAL----- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC------------------HHHHHHHHHHHH--TTCEEEEEESSCCC-------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC------------------HHHHHHHHHHHH--cCCcEEEEEecccccc-----
Confidence 356788999999999999999744431 245556666655 5599999997421100
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEe
Q 004061 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (776)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVD 719 (776)
..+ ....|.++|+++ + ++. ....+|+|++|||
T Consensus 100 --------~~~-------~~~~l~~~gi~v----~--~~~---------------------------~~~~~H~K~~viD 131 (196)
T 4ggj_A 100 --------NGS-------QIGLLRKAGIQV----R--HDQ---------------------------DLGYMHHKFAIVD 131 (196)
T ss_dssp ---------CC-------HHHHHHHTTCEE----E--ECC---------------------------SSSCCCCEEEEET
T ss_pred --------cHH-------HHHHHHhcCCCc----c--ccc---------------------------ccccccCcEEEEc
Confidence 000 145678889875 1 121 1247899999999
Q ss_pred eeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhcc
Q 004061 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWHA 775 (776)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~~ 775 (776)
++++++||+||+.+|+..| .|.+++++|++++. ...+.+.++|.+
T Consensus 132 ~~~~~~GS~N~t~~~~~~n--~E~~~~i~~~~~~~---------~~~~~F~~~W~~ 176 (196)
T 4ggj_A 132 KKVLITGSLNWTTQAIQNN--RENVLIMEDTEYVR---------LFLEEFERIWEE 176 (196)
T ss_dssp TTEEEEESCCBCHHHHHHC--CEEEEEECCHHHHH---------HHHHHHHHHHHH
T ss_pred ceEEEecCccCChhhhccc--ceeEEEEECHHHHH---------HHHHHHHHHHHh
Confidence 9999999999999999854 99999999987653 677888899963
No 21
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.60 E-value=6.7e-15 Score=138.03 Aligned_cols=107 Identities=17% Similarity=0.419 Sum_probs=91.6
Q ss_pred eeeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC-
Q 004061 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP- 89 (776)
Q Consensus 11 ~~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~- 89 (776)
+..+..|.|.|+|++|++|+. +..+. +||||+|.+.
T Consensus 14 ~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DPyv~v~l~~ 50 (134)
T 2b3r_A 14 SVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNPYVKTYLLP 50 (134)
T ss_dssp EEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCEEEEEEEES
T ss_pred EEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCeEEEEEEEc
Confidence 356788999999999999986 54443 8999999982
Q ss_pred ---CeeeeeeccccCCCCCeeccEEEEE-ecC---CCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEcc
Q 004061 90 ---QATVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (776)
Q Consensus 90 ---~~~~~~T~~~~~~~~P~w~e~f~~~-~~~---~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (776)
.....||++++++.||+|||+|.|. +.. ....|.|+|||++.++ +++||.+.|++.++..+.....|++|.
T Consensus 51 ~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 51 DTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp CSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred CCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 2345799999999999999999999 764 2357999999999997 899999999999999888889999994
No 22
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.58 E-value=6.9e-15 Score=140.96 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.3
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (776)
..+.|.|+|++|++|+.++..+. +||||+|.+. +..
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 77 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence 46899999999999998886654 8999999993 334
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEcc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (776)
..||++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.|++.++..+...+.|++|.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 57999999999999999999998653 456999999999987 899999999999998888899999984
No 23
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.58 E-value=5.4e-15 Score=140.99 Aligned_cols=120 Identities=18% Similarity=0.325 Sum_probs=94.3
Q ss_pred CCCCCCCCCceee----ee--ceEEEEEEEEeecCCCCCC-CchhhhccccccccCCCCCCCCccccCCcCccccccccc
Q 004061 1 MAAGDDSDKEKVI----YL--HGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIR 73 (776)
Q Consensus 1 ~~~~~~~~~~~~~----~~--~g~l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (776)
|+-++.+...++. |. .|.|.|+|++|++|+.++. .+.
T Consensus 1 ~s~~~~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~------------------------------------ 44 (148)
T 3fdw_A 1 MSLGNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKR------------------------------------ 44 (148)
T ss_dssp -----CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTB------------------------------------
T ss_pred CCcCCCccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCC------------------------------------
Confidence 4445555555442 22 5889999999999998773 443
Q ss_pred cCCCcCCCcEEEEEECC----eeeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEcccc
Q 004061 74 KSKIITSDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAH 145 (776)
Q Consensus 74 ~~~~~~~dpyv~v~~~~----~~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~ 145 (776)
+||||+|.+.. ....+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.|+|.
T Consensus 45 ------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~ 118 (148)
T 3fdw_A 45 ------SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMD 118 (148)
T ss_dssp ------CCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHH
T ss_pred ------CCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcc
Confidence 89999999852 23679999999999999999999987753 35999999999987 899999999999
Q ss_pred ccccCceeEEEEEccCC
Q 004061 146 TIATGELISRWYDIIAP 162 (776)
Q Consensus 146 ~~~~~~~~~~w~~l~~~ 162 (776)
++..+...+.|++|...
T Consensus 119 ~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 119 SWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp HHHHHCCSEEEEECBCC
T ss_pred cccccCCccceEECcCc
Confidence 99877778899999543
No 24
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.58 E-value=9e-15 Score=139.63 Aligned_cols=107 Identities=22% Similarity=0.389 Sum_probs=92.8
Q ss_pred eeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (776)
+.+..|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 26 l~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~ 63 (149)
T 1a25_A 26 AHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPD 63 (149)
T ss_dssp EEESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESC
T ss_pred EEecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEECC
Confidence 46678999999999999998886654 89999999953
Q ss_pred ---eeeeeeccccCCCCCeeccEEEEEecCC--CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccC
Q 004061 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (776)
Q Consensus 91 ---~~~~~T~~~~~~~~P~w~e~f~~~~~~~--~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (776)
....||++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.|++.++..+ ..+.||+|..
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 64 PKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp TTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 4567999999999999999999998764 346999999999997 89999999999999865 5789999953
No 25
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.58 E-value=1e-14 Score=136.96 Aligned_cols=108 Identities=22% Similarity=0.401 Sum_probs=92.8
Q ss_pred eeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-- 89 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-- 89 (776)
+.+-.|.|.|+|++|++|+.++..+. +||||+|.+.
T Consensus 11 l~~~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~ 48 (137)
T 3rdl_A 11 AEVTDEKLHVTVRDAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 48 (137)
T ss_dssp EEEETTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEECC
T ss_pred EEEcCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeeEEEEEEcC
Confidence 45678999999999999999886665 8999999993
Q ss_pred --CeeeeeeccccCCCCCeeccEEEEEecCCC--ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCC
Q 004061 90 --QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 90 --~~~~~~T~~~~~~~~P~w~e~f~~~~~~~~--~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
.....+|++++++.||.|||+|.|.+.... ..|.|+|||++.++ +++||.+.+++.++..+. ..+|++|...
T Consensus 49 ~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 49 PKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp TTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred CCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 345679999999999999999999987643 45999999999987 899999999999998654 8899999533
No 26
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.58 E-value=8.4e-15 Score=143.32 Aligned_cols=108 Identities=22% Similarity=0.397 Sum_probs=93.6
Q ss_pred eeeeceEEEEEEEEeecCCCCCC-CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (776)
+.|..|.|.|+|++|++|+.++. .+. +||||+|.+..
T Consensus 25 l~y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~~ 62 (171)
T 2q3x_A 25 MEDKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLLE 62 (171)
T ss_dssp EEEETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEEC
Confidence 45678999999999999998874 344 89999999843
Q ss_pred --e--eeeeeccccCCCCCeeccEEEEEecCCCceEEEEEE-EcCCCC-CceeEEEEccccccccCceeEEEEEccC
Q 004061 91 --A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (776)
Q Consensus 91 --~--~~~~T~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~-~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (776)
. ...||++++++.||+|||+|.|.+......|.|+|| |++.++ +++||.+.|+|.++..+.....|++|..
T Consensus 63 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~ 139 (171)
T 2q3x_A 63 NGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP 139 (171)
T ss_dssp TTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred CCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence 2 367999999999999999999999777777999999 999987 8999999999999987778999999953
No 27
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.58 E-value=6.6e-15 Score=139.45 Aligned_cols=103 Identities=33% Similarity=0.548 Sum_probs=90.7
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (776)
..+.|.|+|++|++|+.++..+. +||||+|.+. ...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 69 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence 56789999999999998776554 8999999992 345
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
..+|++++++.||+|||+|.|.+..+ ...|+|+|||++.++ +++||.+.|+|.++..+...+.|++|
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 140 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEEC
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEEC
Confidence 67999999999999999999998654 256999999999987 89999999999999988889999998
No 28
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.57 E-value=2.7e-14 Score=151.15 Aligned_cols=126 Identities=29% Similarity=0.491 Sum_probs=107.2
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--ee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (776)
-.|.|.|+|++|++|+.++..+. +||||+|.+.. ..
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 54 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 54 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence 56899999999999998886665 89999999943 34
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCC
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (776)
..+|++++++.||+|||+|.|.+..+ ...|+|+|||++.++ +++||.+.++|.++..+...+.|++|....+....
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 134 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence 57999999999999999999998753 356999999999987 89999999999999888888999999654433334
Q ss_pred CCceEEEEEEEEec
Q 004061 169 PGASIQLELKFTPC 182 (776)
Q Consensus 169 ~~g~i~l~l~~~p~ 182 (776)
..|+|.+.+.|.|.
T Consensus 135 ~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 135 KLGDICFSLRYVPT 148 (284)
T ss_dssp CCCEEEEEEEEETT
T ss_pred ccccEEEEEEecCc
Confidence 68999999999874
No 29
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.57 E-value=3.9e-15 Score=140.83 Aligned_cols=107 Identities=28% Similarity=0.440 Sum_probs=92.6
Q ss_pred eeeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004061 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (776)
Q Consensus 12 ~~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (776)
+.|..|.|.|+|++|++|+.++..+. +||||+|.+...
T Consensus 13 l~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~ 50 (142)
T 1rh8_A 13 INYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLPG 50 (142)
T ss_dssp EEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETTS
T ss_pred EEEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEecC
Confidence 46778999999999999999886665 899999999653
Q ss_pred -------------eeeeeccccCCCCCeeccEEEEE-ecC---CCceEEEEEEEcCCCC-CceeEEEEccccccccCcee
Q 004061 92 -------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (776)
Q Consensus 92 -------------~~~~T~~~~~~~~P~w~e~f~~~-~~~---~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (776)
...||++++++.||+|||+|.|. +.. ....|.|+|||++.++ +++||.+.|++.++..+...
T Consensus 51 ~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~ 130 (142)
T 1rh8_A 51 RGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT 130 (142)
T ss_dssp SCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC
T ss_pred CCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCC
Confidence 24699999999999999999997 543 3456999999999987 89999999999999877778
Q ss_pred EEEEEcc
Q 004061 154 SRWYDII 160 (776)
Q Consensus 154 ~~w~~l~ 160 (776)
..|++|.
T Consensus 131 ~~W~~L~ 137 (142)
T 1rh8_A 131 PRWYPLK 137 (142)
T ss_dssp CEEEECB
T ss_pred CeEEECC
Confidence 8999994
No 30
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=143.02 Aligned_cols=104 Identities=25% Similarity=0.414 Sum_probs=89.8
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..+.|.|+|++|++|++++..+. +||||++.+..
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~ 78 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES 78 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence 46789999999999999886665 89999999954
Q ss_pred -eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccc-cCceeEEEEEcc
Q 004061 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII 160 (776)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~-~~~~~~~w~~l~ 160 (776)
....||++++++.||+|||+|.|.+... ...|+|+|||++.++ +++||.+.|++.++. .+.....|++|+
T Consensus 79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 2357999999999999999999998753 346999999999997 899999999999996 466788999983
No 31
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=135.31 Aligned_cols=104 Identities=29% Similarity=0.473 Sum_probs=90.3
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (776)
..+.|.|+|++|++|+.++..+. +||||+|.+. ...
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH 61 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 56889999999999998876654 8999999994 345
Q ss_pred eeeeccccCCCCCeeccEEEEEecC----CCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEcc
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~----~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (776)
..||++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.|++.++..+.....|++|.
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 134 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECc
Confidence 6799999999999999999998533 2456999999999987 899999999999999887888999994
No 32
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.54 E-value=2.4e-14 Score=132.90 Aligned_cols=101 Identities=26% Similarity=0.444 Sum_probs=83.0
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC----Ce
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~ 91 (776)
.|.|.|+|++|++|+.++..+. +||||+|.+. ..
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 54 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 54 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSGG
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 5789999999999998886664 8999999982 34
Q ss_pred eeeeeccccCCCCCeeccEEEEEecC----CCceEEEEEEEcCCCC---CceeEEEEccccccccCceeEEEEEc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~----~~~~l~i~v~~~~~~~---~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
...+|++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.++.... ...||+|
T Consensus 55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 56799999999999999999999533 2346999999999886 899999999999987544 7899987
No 33
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.53 E-value=4.2e-14 Score=133.22 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=71.7
Q ss_pred CCcEEEEEEC---CeeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCce
Q 004061 80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (776)
Q Consensus 80 ~dpyv~v~~~---~~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~ 152 (776)
+||||+|.+. +....+|++++++.||+|||+|.|.+... ...|+|+|||++.++ +++||.+.|+|.++..+..
T Consensus 44 sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~ 123 (138)
T 1wfm_A 44 CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG 123 (138)
T ss_dssp CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT
T ss_pred cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccc
Confidence 8999999992 34457999999999999999999998764 346999999999987 8999999999999986677
Q ss_pred eEEEEEccC
Q 004061 153 ISRWYDIIA 161 (776)
Q Consensus 153 ~~~w~~l~~ 161 (776)
...|++|..
T Consensus 124 ~~~W~~L~~ 132 (138)
T 1wfm_A 124 AAQWGELKT 132 (138)
T ss_dssp CCEEEECCC
T ss_pred ccceeeCcC
Confidence 889999953
No 34
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.53 E-value=5.5e-14 Score=132.55 Aligned_cols=104 Identities=24% Similarity=0.404 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC----Ce
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~ 91 (776)
.+.|.|+|++|++|+.++..+. +||||+|.+. ..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 57 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 57 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 5789999999999999887665 8999999982 24
Q ss_pred eeeeeccccCCCCCeeccEEEEEe-cCC---CceEEEEEEEcCCCC---CceeEEEEccccccccCceeEEEEEccCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPL-AHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~-~~~---~~~l~i~v~~~~~~~---~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
...+|++++++.||+|||+|.|.+ ... ...|.|+|||++.++ +++||.+.|++.++.... ...||+|...
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 557999999999999999999994 332 256999999999986 799999999999987554 7899999544
No 35
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.52 E-value=4.4e-14 Score=133.57 Aligned_cols=103 Identities=29% Similarity=0.480 Sum_probs=89.2
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..+.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK 64 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 56889999999999998886654 89999999954
Q ss_pred eeeeeeccccCCCCCeeccEEEEE-ecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~-~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
....||++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||.+.|++.++..++....|++|
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 356799999999999999999998 5432 246999999999997 79999999999999988777788887
No 36
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.51 E-value=7.7e-14 Score=133.84 Aligned_cols=107 Identities=22% Similarity=0.388 Sum_probs=89.4
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (776)
..-.|.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 23 ~~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~~~ 59 (153)
T 3fbk_A 23 DAQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIPED 59 (153)
T ss_dssp EESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEESCS
T ss_pred ECCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEcCC
Confidence 346788999999999999877 344 89999999832
Q ss_pred --eeeeeeccccCCCCCeeccEEEEEecC--CCceEEEEEEEcCCCC--CceeEEEEcccccccc-CceeEEEEEccCC
Q 004061 91 --ATVARTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIAP 162 (776)
Q Consensus 91 --~~~~~T~~~~~~~~P~w~e~f~~~~~~--~~~~l~i~v~~~~~~~--~~~iG~~~i~l~~~~~-~~~~~~w~~l~~~ 162 (776)
....+|++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.|++.++.. +.....|++|...
T Consensus 60 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 60 SRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp CCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred CCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 345799999999999999999999843 3445999999999874 7999999999999984 7788999999544
No 37
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.50 E-value=1.1e-13 Score=130.20 Aligned_cols=104 Identities=29% Similarity=0.421 Sum_probs=87.0
Q ss_pred eceEEEEEEEEeecCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e
Q 004061 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~ 91 (776)
..+.|.|+|++|++|+.++.. +. +||||+|.+.. .
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK 57 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence 568899999999999988864 44 89999999952 4
Q ss_pred eeeeeccccCCCCCeeccEEEEE-ecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCce-eEEEEEcc
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDII 160 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~-~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~-~~~w~~l~ 160 (776)
...+|++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||.+.|+|.++..+.. ...|++|.
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 56799999999999999999996 6553 346999999999987 8999999999999986544 45678874
No 38
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.50 E-value=3.2e-14 Score=136.42 Aligned_cols=103 Identities=27% Similarity=0.414 Sum_probs=81.0
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEE--CCe-
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQA- 91 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~- 91 (776)
..+.|.|+|++|++|+.++..+. +||||+|.+ ++.
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR 65 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence 46889999999999998876654 899999999 443
Q ss_pred -eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccC
Q 004061 92 -TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (776)
Q Consensus 92 -~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (776)
...||++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++.+. +.....|++|+.
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~l~~ 138 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICD 138 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence 2569999999999999999999987753 45999999999987 89999999999872 334556666644
No 39
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.50 E-value=9e-14 Score=130.50 Aligned_cols=104 Identities=28% Similarity=0.441 Sum_probs=85.6
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
-.|.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 51 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR 51 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence 45889999999999998876654 89999999953
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCC
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
....+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.|++.++. ...++|++|+..
T Consensus 52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~ 125 (138)
T 3n5a_A 52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIAR 125 (138)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHS
T ss_pred cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhC
Confidence 24679999999999999999999987654 45999999999987 899999999998754 234456665443
No 40
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.7e-14 Score=131.91 Aligned_cols=104 Identities=22% Similarity=0.413 Sum_probs=87.4
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e--
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-- 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~-- 91 (776)
.+.|.|+|++|++|+.++..+ +||||+|.+.. .
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence 688999999999999876433 79999999832 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC---CceeEEEEccccccccCceeEEEEEccCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~---~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
...+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++..+.....|++|...
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 457999999999999999999998653 346999999999875 36999999999999877778899999543
No 41
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.49 E-value=1.2e-13 Score=133.23 Aligned_cols=104 Identities=27% Similarity=0.445 Sum_probs=87.2
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 60 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence 46899999999999999886654 89999999842
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEcccccc------------ccCceeE
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS 154 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~------------~~~~~~~ 154 (776)
....+|++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.|++..+ ..+..+.
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~ 140 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence 2457999999999999999999998764 345999999999987 89999999999853 1345678
Q ss_pred EEEEcc
Q 004061 155 RWYDII 160 (776)
Q Consensus 155 ~w~~l~ 160 (776)
.|++|.
T Consensus 141 ~W~~L~ 146 (159)
T 1tjx_A 141 QWHTLQ 146 (159)
T ss_dssp EEEECB
T ss_pred eEEECc
Confidence 898884
No 42
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.4e-14 Score=133.83 Aligned_cols=111 Identities=26% Similarity=0.462 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeecCCCC-CCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--ee
Q 004061 16 HGDLDLKIIRARRLPNM-DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (776)
.|.|.|+|++|++|+.+ +..+. +. ....+||||+|.+.. ..
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~--~~----------------------------------~~~~~dpyv~v~l~~~~~~ 68 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGS--RQ----------------------------------DMAHSNPYVKICLLPDQKN 68 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCS--SC----------------------------------TTCCCCCEEEEEEETCCSS
T ss_pred CCEEEEEEEEEeCCCCccccccc--cc----------------------------------cCCCCCcEEEEEEEeCCCc
Confidence 67899999999999974 43220 00 011289999999953 34
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCC
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (776)
..+|++++++.||+|||+|.|.+... ...|+|+|||++.++ +++||.+.|+|.++..++....|++| .+.
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L-~~~ 142 (147)
T 2enp_A 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL-IPS 142 (147)
T ss_dssp CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECC-BCC
T ss_pred ceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEe-ecC
Confidence 57999999999999999999998653 346999999999987 89999999999999876667788887 443
No 43
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.48 E-value=1.8e-13 Score=132.98 Aligned_cols=91 Identities=29% Similarity=0.405 Sum_probs=79.7
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..+.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK 72 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46889999999999998886654 89999999964
Q ss_pred eeeeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEcccccc
Q 004061 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (776)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~ 147 (776)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++.++
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 3567999999999999999999998763 346999999999987 89999999999875
No 44
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.45 E-value=4.3e-13 Score=143.00 Aligned_cols=125 Identities=24% Similarity=0.392 Sum_probs=100.1
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEE--CCee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT 92 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~~ 92 (776)
-.|.|.|+|++|++|+.++..+. +||||+|.+ ++..
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~ 55 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKK 55 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCe
Confidence 36889999999999999887665 899999999 2345
Q ss_pred eeeeccccCCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEcc-cccccc-CceeEEEEEccCCCCCC
Q 004061 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIAT-GELISRWYDIIAPSGSP 166 (776)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~-l~~~~~-~~~~~~w~~l~~~~~~~ 166 (776)
..+|++++++.||+|||+|.|.+... ...|+|+|||++.++ +++||.+.++ +.++.. +.....|++|....+.
T Consensus 56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~- 134 (296)
T 1dqv_A 56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSE- 134 (296)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSC-
T ss_pred eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccccc-
Confidence 57999999999999999999998654 236999999999987 8999999996 444432 3446689998543332
Q ss_pred CCCCceEEEEEEEEec
Q 004061 167 PKPGASIQLELKFTPC 182 (776)
Q Consensus 167 ~~~~g~i~l~l~~~p~ 182 (776)
....|+|.+.+.|.|.
T Consensus 135 ~~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 135 KADLGELNFSLCYLPT 150 (296)
T ss_dssp CSCCCEEEEEEEEETT
T ss_pred ccccceEEEEEEeccc
Confidence 2467999999999763
No 45
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.45 E-value=4.1e-13 Score=124.26 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=89.0
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeeccEEEEEecCC---CceEEEEEEEcCCCC-CceeEEEEccccccccCceeE
Q 004061 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~-~~~~P~w~e~f~~~~~~~---~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~ 154 (776)
+|||+++.+.+.+ .||++++ ++.+|+|||.|.|++..+ .+.|+|+|+|+++++ +.+||++.++|.++..+..+.
T Consensus 37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~ 115 (144)
T 3l9b_A 37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE 115 (144)
T ss_dssp EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence 8999999998766 5999998 799999999999998875 345999999999987 999999999999999777777
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEEecC
Q 004061 155 RWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (776)
Q Consensus 155 ~w~~l~~~~~~~~~~~g~i~l~l~~~p~~ 183 (776)
.+.+|++.+.++ ..++|.+.|+|.|..
T Consensus 116 l~~~LvD~n~~~--~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 116 VSDTLIDDNNAI--IKTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEECTTSCE--EEEEEEEEEEEEETT
T ss_pred EeecccCCCCCc--cccEEEEEEEecCCC
Confidence 888888888776 358999999999964
No 46
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.42 E-value=7.2e-13 Score=123.61 Aligned_cols=115 Identities=18% Similarity=0.289 Sum_probs=82.2
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (776)
.|.|.|+|++|++++. .+. +||||+|. .. . .+
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~------------------------------------------~DPYv~v~-~~-~-~k 35 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEK------------------------------------------FNTYVTLK-VQ-N-VK 35 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGG------------------------------------------CEEEEEEE-ET-T-EE
T ss_pred ceEEEEEEEEeECCCC---CCC------------------------------------------cCeEEEEE-ec-C-EE
Confidence 3789999999998852 333 89999999 22 2 35
Q ss_pred ecccc-CCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEccccccccCc--eeEEEEEcc----CCCC---
Q 004061 96 TRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISRWYDII----APSG--- 164 (776)
Q Consensus 96 T~~~~-~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~--~~~~w~~l~----~~~~--- 164 (776)
|++++ ++.||.|||+|.|.+..+...|.|+|||++ ++ +++||++.|+|.++.... ....|.++. ...|
T Consensus 36 t~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~ 114 (131)
T 2cjt_A 36 STTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 114 (131)
T ss_dssp EECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------
T ss_pred EeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCc
Confidence 65554 699999999999999887778999999999 65 899999999999986322 122455442 1222
Q ss_pred -CCCCCCceEEEEEEE
Q 004061 165 -SPPKPGASIQLELKF 179 (776)
Q Consensus 165 -~~~~~~g~i~l~l~~ 179 (776)
.-....+.+.+.++|
T Consensus 115 G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 115 GTKDPTFHRILLDAHF 130 (131)
T ss_dssp CCSCCCCCEEEEEEEE
T ss_pred ceECCCccEEEEEEEe
Confidence 111124457777776
No 47
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.41 E-value=3.5e-13 Score=137.28 Aligned_cols=151 Identities=15% Similarity=0.049 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCcc
Q 004061 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (776)
Q Consensus 560 ~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (776)
....+.++++|++||++|+|+. |+++ + ..++.+|.+|++|| |+||||++........
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~------~-----------~~I~~aL~~Aa~RG--V~VRii~D~~~~~~~~--- 113 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFT------S-----------LFLADSIKRALQRG--VIIRIISDGEMVYSKG--- 113 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBC------C-----------HHHHHHHHHHHHHT--CEEEEECCTTTTTSTT---
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeC------C-----------HHHHHHHHHHHHcC--CeEEEEEechhhhhhH---
Confidence 4567789999999999999997 5442 1 24556666676655 9999999853211100
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEEe
Q 004061 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (776)
Q Consensus 640 ~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IVD 719 (776)
. ....+...|+.+ ..+.. ....-......+|.. .........|.|++++|
T Consensus 114 ---------~--------~~~~~~~~~~~~------~~~~~--~~~~h~K~~viD~~~-----~~~~~~~~~H~K~~v~D 163 (220)
T 4gel_A 114 ---------S--------QISMLAQLGVPV------RVPIT--TNLMHNKFCIIDGFE-----RVEEIRLLRKLKFMRPC 163 (220)
T ss_dssp ---------C--------HHHHHHHTTCCE------EECCS--SSCBCCCEEEESCHH-----HHHHHHHHTTCSCCCCC
T ss_pred ---------H--------HHHHHHhcCCcE------Eeecc--cccccceeEEEcchh-----cccccccccceeccccc
Confidence 0 134455666543 11100 000000000000000 00001124466666667
Q ss_pred eeEEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhc
Q 004061 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWH 774 (776)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~ 774 (776)
++++++||+||+.+|+..| .|..+++.+++++. ...+.+.++|.
T Consensus 164 ~~~v~~GS~N~t~~s~~~N--~E~~~vi~~~~~a~---------~~~~~F~~~W~ 207 (220)
T 4gel_A 164 YSIVISGSVNWTALGLGGN--WENCIITADDKLTA---------TFQAEFQRMWR 207 (220)
T ss_dssp CCEEEEESCCBSHHHHHTS--BEEEEEECCHHHHH---------HHHHHHHHHHH
T ss_pred cceEEecCccccccccccC--ceEEEEEECHHHHH---------HHHHHHHHHHH
Confidence 7899999999999999855 99999999987663 67888999995
No 48
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.35 E-value=3.9e-12 Score=145.89 Aligned_cols=116 Identities=21% Similarity=0.360 Sum_probs=98.2
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (776)
-.|.|.|+|++|++|++++..+. +||||+|.+++.. .
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~~-~ 421 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQS-Y 421 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-E
T ss_pred CCceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCee-c
Confidence 35789999999999999887665 8999999997754 7
Q ss_pred eeccccCCCCCeeccEEEEEecCCC-ceEEEEEEEcCCCC-CceeEEEEccccccccCce----eEEEEEccCCCCCCCC
Q 004061 95 RTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPK 168 (776)
Q Consensus 95 ~T~~~~~~~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~----~~~w~~l~~~~~~~~~ 168 (776)
+|++++++.||.|||+|.|.+..+. ..|+|+|||++.++ +++||.+.+++.++..+.. ...|+++. . .
T Consensus 422 ~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~-~-----~ 495 (510)
T 3jzy_A 422 TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH-E-----V 495 (510)
T ss_dssp ECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB-S-----S
T ss_pred cCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCC-C-----C
Confidence 9999999999999999999997765 45999999999997 8999999999999986543 77899983 2 2
Q ss_pred CCceEEEEEEE
Q 004061 169 PGASIQLELKF 179 (776)
Q Consensus 169 ~~g~i~l~l~~ 179 (776)
..|+|.+.+.+
T Consensus 496 ~~G~i~l~~~l 506 (510)
T 3jzy_A 496 PTGEVWVRFDL 506 (510)
T ss_dssp SSCEEEEEEEE
T ss_pred CCceEEEEEEE
Confidence 46888887765
No 49
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.33 E-value=7.6e-12 Score=142.75 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=90.7
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (776)
.|.|.|+|++|++|+. |..+. +||||+|.+.+.. .|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~k 428 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FR 428 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred ccEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-ee
Confidence 4789999999999998 77765 9999999998865 79
Q ss_pred eccccCCCCCeeccEEEEEecC--CCceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCCCCCCCce
Q 004061 96 TRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (776)
Q Consensus 96 T~~~~~~~~P~w~e~f~~~~~~--~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~ 172 (776)
|+++++++||+|||+|.|.+.. ....|+|+|||+|.++ +++||.+.++|. .| ..+.|+++ ..|+
T Consensus 429 Tkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l---------~~G~ 495 (540)
T 3nsj_A 429 TGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL---------NHGR 495 (540)
T ss_dssp CCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC---------SSSE
T ss_pred eeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc---------CCeE
Confidence 9999999999999999998543 4566999999999987 799999999987 23 46789886 3588
Q ss_pred EEEEEEE
Q 004061 173 IQLELKF 179 (776)
Q Consensus 173 i~l~l~~ 179 (776)
|.+++..
T Consensus 496 l~~~~~~ 502 (540)
T 3nsj_A 496 VKFSYHA 502 (540)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8887663
No 50
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.33 E-value=7.2e-12 Score=121.73 Aligned_cols=66 Identities=23% Similarity=0.417 Sum_probs=56.6
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeeccEEEEEecCCCceEEEEEEEcCCCC-CceeEEEEcccccccc
Q 004061 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~-~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~ 149 (776)
+||||+|. .. . .||++++ ++.||+|||+|.|.+......|.|+|||++ ++ |++||++.|+|.++..
T Consensus 32 ~DPYV~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 32 FNTYVTLK-VQ-N-VESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred CCeEEEEE-ec-c-eEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence 89999999 22 2 4676665 699999999999999987778999999999 65 9999999999999863
No 51
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.32 E-value=2.4e-13 Score=154.38 Aligned_cols=127 Identities=24% Similarity=0.419 Sum_probs=25.5
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (776)
....|.|+|+|++|++|+++ .||||++.+++..
T Consensus 7 ~r~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~ 39 (483)
T 3bxj_A 7 RRVDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDML 39 (483)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred ceeccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeE
Confidence 34678899999999999853 3899999998876
Q ss_pred eeeeccccCC---CCCeeccEEEEEecCCCceEEEEEEEc-C---CCC-CceeEEEEccccccccCceeEEEEEccCCCC
Q 004061 93 VARTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-D---VFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (776)
Q Consensus 93 ~~~T~~~~~~---~~P~w~e~f~~~~~~~~~~l~i~v~~~-~---~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (776)
..||++++++ .||+|||+|.|.+.++...|.|+|||+ + ..+ +++||.+.|++.++..+...+.|++|.++.+
T Consensus 40 ~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~ 119 (483)
T 3bxj_A 40 YARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTG 119 (483)
T ss_dssp -------------------CCEECC------------------------------------------CCEECC-------
T ss_pred EeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCC
Confidence 7899999999 999999999999766666799999994 4 244 8999999999999998888899999965432
Q ss_pred ---------------------CCCCCCceEEEEEEEEecCCCC
Q 004061 165 ---------------------SPPKPGASIQLELKFTPCDKNP 186 (776)
Q Consensus 165 ---------------------~~~~~~g~i~l~l~~~p~~~~~ 186 (776)
+.....|+|+|+++|.+....|
T Consensus 120 ~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 120 SGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILP 162 (483)
T ss_dssp -------------------------------CEEEEEECCBCC
T ss_pred ccccccccccccccccccccccCCCCCceEEEEEEeeeeeecc
Confidence 1113468999999998865444
No 52
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.31 E-value=8e-12 Score=145.66 Aligned_cols=120 Identities=24% Similarity=0.443 Sum_probs=100.0
Q ss_pred eceEEEEEEEEeecCCCCCC--CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--
Q 004061 15 LHGDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (776)
..+.|.|+|++|++|+.++. .+. +||||+|.+.+
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~------------------------------------------~DPYV~V~l~g~~ 532 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSI------------------------------------------VDPKVIVEIHGVG 532 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSC------------------------------------------CCEEEEEEEESSG
T ss_pred cceEEEEEEEEcCCCCcccccccCC------------------------------------------CCcEEEEEEecCC
Confidence 56889999999999998763 222 89999999944
Q ss_pred --eeeeeeccccCC-CCCeeccEEEEEecCCC-ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCCC
Q 004061 91 --ATVARTRVLKNS-QEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (776)
Q Consensus 91 --~~~~~T~~~~~~-~~P~w~e~f~~~~~~~~-~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (776)
....||++++++ .||+|||+|.|.+..+. ..|+|+|||++.++ +++||.+.|++..+..|. +|++|.+..|.
T Consensus 533 ~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~ 609 (624)
T 1djx_A 533 RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGD 609 (624)
T ss_dssp GGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSC
T ss_pred CCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcC
Confidence 245799999997 99999999999998775 45999999999986 899999999999998763 69999777765
Q ss_pred CCCCCceEEEEEEEE
Q 004061 166 PPKPGASIQLELKFT 180 (776)
Q Consensus 166 ~~~~~g~i~l~l~~~ 180 (776)
+. ..++|.+++.|.
T Consensus 610 ~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 610 QH-PSATLFVKISIQ 623 (624)
T ss_dssp EE-EEEEEEEEEEEE
T ss_pred CC-CceEEEEEEEEE
Confidence 52 467888888774
No 53
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.25 E-value=1.6e-11 Score=138.03 Aligned_cols=149 Identities=17% Similarity=0.006 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~ 320 (776)
......++++|.+|+++|+|++.+|.|+ ..+.++|+.|++|||+|+||+ ++..+.........
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tpYf~p~----------------~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~ 319 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTPYFNFP----------------RTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ 319 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECSSSCCC----------------HHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred hHHHHHHHHHHHhcccEEEEEEeccCCC----------------HHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence 5578899999999999999999888875 789999999999999999998 77643321111111
Q ss_pred CccccCcH-HHH-----------hhhcCCC-ceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCCcceEEE
Q 004061 321 GVMATHDE-ETK-----------KFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (776)
Q Consensus 321 ~~~~~~~~-~~~-----------~~l~~~g-v~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~~~~~a~ 387 (776)
.+...... ... ..|.++| +.+..+... ....|.|++|||++ +++
T Consensus 320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~~---------------~~~lHaK~~vvD~~--------~~~ 376 (458)
T 3hsi_A 320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDG---------------DNTYHLKGVWVDDR--------YIL 376 (458)
T ss_dssp CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEECBT---------------TBEECCCEEEETTT--------EEE
T ss_pred hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEecC---------------CCceeEEEEEECCe--------EEE
Confidence 11111000 111 2244566 444332211 12489999999998 999
Q ss_pred EccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh---HHHHHHHHHHHHhhhccc
Q 004061 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKATK 461 (776)
Q Consensus 388 vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp---av~~l~~~F~~~W~~~~~ 461 (776)
|||.|++...+ .-..++.+.|.++ .+.++.+.|..+|..+..
T Consensus 377 vGS~N~d~RS~--------------------------------~lN~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~~ 421 (458)
T 3hsi_A 377 LTGNNLNPRAW--------------------------------RLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKV 421 (458)
T ss_dssp EECCCCSHHHH--------------------------------HTCEEEEEEEECTTCSSHHHHHHHHHHHHTTEEE
T ss_pred ecCCCCCcchh--------------------------------hhCceeEEEEeCCcHHHHHHHHHHHHHHHHhCeE
Confidence 99999988322 1234889999988 789999999999987543
No 54
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.25 E-value=2.5e-11 Score=128.25 Aligned_cols=103 Identities=26% Similarity=0.448 Sum_probs=85.8
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Ce--
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA-- 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~-- 91 (776)
.+.|.|+|++|++|+.++..+. +||||+|.+. +.
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 186 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL 186 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcEe
Confidence 5789999999999998886664 8999999983 32
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccc------------cCceeEE
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELISR 155 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~------------~~~~~~~ 155 (776)
...+|++++++.||.|||+|.|.+..+. ..|.|+|||++.++ +++||.+.|++..+. .+..+.+
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~ 266 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 266 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence 4579999999999999999999987653 35999999999987 899999999997632 2445678
Q ss_pred EEEcc
Q 004061 156 WYDII 160 (776)
Q Consensus 156 w~~l~ 160 (776)
|++|.
T Consensus 267 W~~L~ 271 (284)
T 2r83_A 267 WHTLQ 271 (284)
T ss_dssp EEECB
T ss_pred eeecC
Confidence 88874
No 55
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.24 E-value=1.3e-11 Score=145.00 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=90.8
Q ss_pred eceEEEEEEEEeecCCC---CCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004061 15 LHGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (776)
..|.|+|+|++|++|+. ++..+. +||||+|.+.+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~ 53 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTT 53 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTS
T ss_pred CccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecC
Confidence 46899999999999997 665444 89999999974
Q ss_pred -eeeeeeccccCCCCCeeccEEEEEecCC-CceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEc
Q 004061 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (776)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~f~~~~~~~-~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (776)
....||++++++.||+|||+|.|.+..+ ...|+|+|||++.+++++||++.|++.++..+...+.|++|
T Consensus 54 ~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L 124 (749)
T 1cjy_A 54 PDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124 (749)
T ss_dssp TTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred CCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence 3457999999999999999999999874 45699999999998899999999999999988888899998
No 56
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.24 E-value=1.2e-11 Score=144.26 Aligned_cols=131 Identities=17% Similarity=0.149 Sum_probs=92.4
Q ss_pred HHHHHHHHhccc-----eEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004061 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (776)
Q Consensus 564 ~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~ 638 (776)
..++++|++|++ +|+| ++|++. |+. .++.++++|++ +||+|+||++..+. -+
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~-----~d~-----------~I~~AL~~AA~--rGV~VrVLvd~~a~--~~-- 406 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVA-----KDS-----------RIIDSMIHAAH--NGKKVTVVVELQAR--FD-- 406 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCC-----TTC-----------HHHHHHHHHHH--TTCEEEEEECTTCS--ST--
T ss_pred hhHHHHHHHHhhCCcceEEEE-Eeeeec-----CcH-----------HHHHHHHHHHh--cCCEEEEEECCCcc--cc--
Confidence 578899999997 9999 899984 222 34445555545 55999999996431 11
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEE
Q 004061 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (776)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IV 718 (776)
.+++.. ..+.|.++|+++ |.+ . ....+|+|++||
T Consensus 407 ------~~~n~~-------~~~~L~~aGV~V--------~~~------------------------~-~~~k~H~Ki~VI 440 (687)
T 1xdp_A 407 ------EEANIH-------WAKRLTEAGVHV--------IFS------------------------A-PGLKIHAKLFLI 440 (687)
T ss_dssp ------TTTTTT-------TTHHHHHHTCEE--------EEC------------------------C-TTCEECCEEEEE
T ss_pred ------hhhHHH-------HHHHHHHCCCEE--------EEe------------------------c-CCccccceEEEE
Confidence 111111 257788899876 211 0 012499999999
Q ss_pred ee----e---EEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhc
Q 004061 719 DD----E---YVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWH 774 (776)
Q Consensus 719 Dd----~---~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~ 774 (776)
|+ + +++|||+|+|.||+. .++|+++.+.+++++. .+.+++..+|.
T Consensus 441 D~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i~~---------~l~~~F~~~~~ 492 (687)
T 1xdp_A 441 SRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARITN---------EVRRVFNFIEN 492 (687)
T ss_dssp EEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHHHH---------HHHHHHHHHHC
T ss_pred EeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHHHH---------HHHHHHHHHHh
Confidence 95 4 499999999999998 5599999999987653 56677777775
No 57
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.17 E-value=1.1e-11 Score=132.07 Aligned_cols=106 Identities=28% Similarity=0.440 Sum_probs=85.7
Q ss_pred ceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--e
Q 004061 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (776)
Q Consensus 16 ~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--~ 91 (776)
.|.|.|+|++|++|+.++..+. +||||+|.+. + .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 188 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL 188 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence 5889999999999999887665 8999999985 2 2
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCCCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (776)
.+.||++++++.||+|||+|.|.+..+. ..|.|+|||++.++ +++||.+.|++..+.. ...++|++++...+
T Consensus 189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~ 264 (296)
T 1dqv_A 189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPR 264 (296)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSS
T ss_pred cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCC
Confidence 4579999999999999999999987653 35999999999997 8999999999987642 12345666554333
No 58
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=99.00 E-value=6.3e-09 Score=93.47 Aligned_cols=89 Identities=16% Similarity=0.362 Sum_probs=75.9
Q ss_pred CCcEEEEEECCeeee---ee-ccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccc-----cC
Q 004061 80 SDPYVTVVVPQATVA---RT-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (776)
Q Consensus 80 ~dpyv~v~~~~~~~~---~T-~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~-----~~ 150 (776)
.||||.|.++..... +| ..+++|..|+|||+|.-.+... ..|+|.|++... ++++.++|++.+|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 899999999875544 77 7788899999999999998665 479999998666 99999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004061 151 ELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (776)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~ 180 (776)
...+.|++| ++.|+|++.++|+
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 567899999 4689999999986
No 59
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.00 E-value=6.7e-10 Score=127.10 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=92.7
Q ss_pred chHHHHHHHHHhccceEEEEEEe----ecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCccCcccc
Q 004061 242 TCWEDICHAISEAHHLIYIVGWS----VFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (776)
Q Consensus 242 ~~~~~l~~~I~~A~~sI~I~~~~----~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~ 317 (776)
.....++++|.+||++|+|++.+ |.|... ....|.++|+.|++|||+||||+ +..........
T Consensus 314 ~~~~~~~~~I~~A~~~I~I~tq~~~pyf~p~~~------------~~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~~~~ 380 (506)
T 1v0w_A 314 PEESALRALVASAKGHIEISQQDLNATCPPLPR------------YDIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGS 380 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCSSCCTTTSCS------------CCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC----
T ss_pred cHHHHHHHHHhCcCcEEEEEeccccccccCccc------------chHHHHHHHHHHHhCCCcEEEEe-CCCCchHHHHH
Confidence 46789999999999999999733 333200 01689999999999999999998 65431110000
Q ss_pred ccCCccccCcHH-----HHhhhcCCC-----------ceEEeccCCCCcccccchhccccceecccceEEEEccCCCCCC
Q 004061 318 KTPGVMATHDEE-----TKKFFKHSS-----------VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNN 381 (776)
Q Consensus 318 ~~~~~~~~~~~~-----~~~~l~~~g-----------v~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VID~~~~~~~ 381 (776)
.........-+. ....+.++| +++..+..... ..+ . .+....+|.|++|||++
T Consensus 381 a~~~~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~--~~~-~---~~~~~~lHaK~~vvD~~----- 449 (506)
T 1v0w_A 381 GGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPN--GKW-A---DGHPYAQHHKLVSVDSS----- 449 (506)
T ss_dssp --CCCCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSS--SSC-T---TSCCCCBCCEEEEETTT-----
T ss_pred hHHHHHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCc--ccc-c---cCccccceEEEEEECCc-----
Confidence 000000000000 000011111 24321110000 000 0 00023589999999999
Q ss_pred cceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHH-hhhc
Q 004061 382 RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR-WRKA 459 (776)
Q Consensus 382 ~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp-av~~l~~~F~~~-W~~~ 459 (776)
++++||+|++. |. ++++.+.|.+| .+.++.+.|.++ |+..
T Consensus 450 ---~~~vGS~N~d~-rS----------------------------------~~E~~l~i~~~~~a~~l~~~f~~~~w~~s 491 (506)
T 1v0w_A 450 ---TFYIGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYS 491 (506)
T ss_dssp ---EEEEESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHH
T ss_pred ---EEEEeCCCCCC-cc----------------------------------hhhceeEecCHHHHHHHHHHHHHHHHhhc
Confidence 99999999966 32 24899999998 568899999975 8754
Q ss_pred c
Q 004061 460 T 460 (776)
Q Consensus 460 ~ 460 (776)
.
T Consensus 492 ~ 492 (506)
T 1v0w_A 492 Q 492 (506)
T ss_dssp G
T ss_pred c
Confidence 3
No 60
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.94 E-value=1.9e-09 Score=127.65 Aligned_cols=107 Identities=22% Similarity=0.397 Sum_probs=91.5
Q ss_pred eeeceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC---
Q 004061 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (776)
Q Consensus 13 ~~~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--- 89 (776)
.+-.+.|.|+|++|++|++++..+. +||||++.+.
T Consensus 168 ~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~~ 205 (674)
T 3pfq_A 168 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 205 (674)
T ss_dssp EECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESCS
T ss_pred eeccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccCc
Confidence 4567889999999999999987765 8999999982
Q ss_pred -CeeeeeeccccCCCCCeeccEEEEEecCC--CceEEEEEEEcCCCC-CceeEEEEccccccccCceeEEEEEccCC
Q 004061 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (776)
Q Consensus 90 -~~~~~~T~~~~~~~~P~w~e~f~~~~~~~--~~~l~i~v~~~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (776)
.....+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++... ...+|++++..
T Consensus 206 ~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls~ 281 (674)
T 3pfq_A 206 KSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 281 (674)
T ss_dssp SCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHC-CEEEEEECBCT
T ss_pred cccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccC-Ccccceeeccc
Confidence 23457999999999999999999998754 345999999999998 99999999999999855 35899999754
No 61
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.93 E-value=5.8e-09 Score=94.87 Aligned_cols=91 Identities=19% Similarity=0.404 Sum_probs=77.2
Q ss_pred CCcEEEEEECCeee---eee-ccccCCCCCeeccEEEEEecCCCceEEEEEEEcCCCCCceeEEEEccccccc-----cC
Q 004061 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (776)
Q Consensus 80 ~dpyv~v~~~~~~~---~~T-~~~~~~~~P~w~e~f~~~~~~~~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~-----~~ 150 (776)
.||||.|.++.... ++| ..+++|..|+|||+|.-.+... ..|+|.|++... ++|..++|++.+|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 89999999987655 888 7888899999999999888664 479999997555 89999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004061 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (776)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p~ 182 (776)
...+.|++| ++.|+|++.++|+-.
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~e 131 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFLE 131 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECCC
T ss_pred CceEEEEec--------ccCcEEEEEEEEEEe
Confidence 567899999 568999999999643
No 62
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.89 E-value=7.5e-09 Score=122.98 Aligned_cols=114 Identities=24% Similarity=0.401 Sum_probs=90.8
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..+.|.|+|++|++|+.+ . +||||+|.+.+
T Consensus 648 ~~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 681 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTD 681 (816)
T ss_dssp CCEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGG
T ss_pred cceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCcc
Confidence 357899999999999742 2 89999999954
Q ss_pred e--eeeeeccccC-CCCCeeccE-EEEE-ecCCC-ceEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCC
Q 004061 91 A--TVARTRVLKN-SQEPVWNEH-FNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (776)
Q Consensus 91 ~--~~~~T~~~~~-~~~P~w~e~-f~~~-~~~~~-~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (776)
. ...||+++++ +.||+|||+ |.|. +..+. ..|+|+|||++ +++||++.|+|..|..| -++++|.+..|
T Consensus 682 ~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~G---yR~vpL~~~~g 755 (816)
T 3qr0_A 682 TVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPG---YRHVPLRNESN 755 (816)
T ss_dssp CEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCE---EEEEEEECTTS
T ss_pred cccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCc---ceEEEEeCCCC
Confidence 1 4569999886 699999998 9998 76654 35999999985 78999999999999976 35788877777
Q ss_pred CCCCCCceEEEEEEEEe
Q 004061 165 SPPKPGASIQLELKFTP 181 (776)
Q Consensus 165 ~~~~~~g~i~l~l~~~p 181 (776)
.+ ...++|.+.+.+..
T Consensus 756 ~~-~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 756 RP-LGLASVFAHIVAKD 771 (816)
T ss_dssp CE-EEEEEEEEEEEEEE
T ss_pred CC-CCceEEEEEEEEEe
Confidence 65 23477877777654
No 63
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.89 E-value=4.7e-09 Score=125.31 Aligned_cols=95 Identities=22% Similarity=0.391 Sum_probs=75.9
Q ss_pred CCcEEEEEECC-----eeeeeeccccC-CCCCeecc-EEEEE-ecCCC-ceEEEEEEEcCCCCCceeEEEEccccccccC
Q 004061 80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (776)
Q Consensus 80 ~dpyv~v~~~~-----~~~~~T~~~~~-~~~P~w~e-~f~~~-~~~~~-~~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~ 150 (776)
+||||+|.+.+ ....||+++++ +.||+||| +|.|. +..+. ..|+|+|||++ +++||++.|+|..|..|
T Consensus 742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence 89999999954 23469999976 59999999 69998 66554 45999999987 89999999999999876
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004061 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (776)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~p 181 (776)
-++++|.+..|.+ -..++|.+.+.+..
T Consensus 819 ---yR~vpL~~~~g~~-l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 819 ---YHYVCLRNEANQP-LCLPALLIYTEASD 845 (885)
T ss_dssp ---EEEEEEECTTSCE-EEEEEEEEEEEEEE
T ss_pred ---ceEEEecCCCCCc-cCceEEEEEEEEEe
Confidence 3568887776654 24678888888765
No 64
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.86 E-value=7.7e-09 Score=123.46 Aligned_cols=113 Identities=21% Similarity=0.357 Sum_probs=88.8
Q ss_pred eceEEEEEEEEeecCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004061 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (776)
Q Consensus 15 ~~g~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (776)
..|.|.|+|++|++|+.. . +||||+|.+.+
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 709 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD 709 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence 468899999999999842 2 89999999943
Q ss_pred -eeeeeec-cccC-CCCCeecc-EEEE-EecCCCc-eEEEEEEEcCCCCCceeEEEEccccccccCceeEEEEEccCCCC
Q 004061 91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHPLS-NLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (776)
Q Consensus 91 -~~~~~T~-~~~~-~~~P~w~e-~f~~-~~~~~~~-~l~i~v~~~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (776)
....||+ ++++ +.||+||| +|.| .+..+.. .|+|.|||++ +++||.+.|++..+..| -+|++|.+..|
T Consensus 710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g 783 (799)
T 2zkm_X 710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSG---YHHLCLHSESN 783 (799)
T ss_dssp CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCC---cEEEeccCCCC
Confidence 1346899 7765 69999999 6999 7866543 5999999987 79999999999999876 35888877666
Q ss_pred CCCCCCceEEEEEEEE
Q 004061 165 SPPKPGASIQLELKFT 180 (776)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (776)
.+. ..+.|.+++.+.
T Consensus 784 ~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 784 MPL-TMPALFIFLEMK 798 (799)
T ss_dssp CEE-EEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEE
Confidence 542 357777777653
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.46 E-value=3e-07 Score=106.71 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=91.8
Q ss_pred HHHHHHHHHhccc-----eEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCC
Q 004061 563 QTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 637 (776)
Q Consensus 563 ~~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~ 637 (776)
...++++|++|++ +|.|+ .|.++. +. .++.++++|+++| |+|++|+...+ .-+.
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~-----ds-----------~Iv~ALi~AA~rG--v~V~vLvel~a--rfde 412 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAE-----NS-----------SIISALEAAAQSG--KKVSVFVELKA--RFDE 412 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCS-----CC-----------HHHHHHHHHHHTT--CEEEEEECCCS--CC--
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcC-----CH-----------HHHHHHHHHHHCC--CEEEEEEeCCC--Ccch
Confidence 4689999999999 99975 666642 11 3555666666655 99999998421 1111
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEE
Q 004061 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (776)
Q Consensus 638 ~~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~I 717 (776)
. ++. ...+.|.++|+++ +|.+ .....|+|++|
T Consensus 413 e--------~ni-------~wa~~Le~aGv~V-------v~g~--------------------------~~lk~H~Ki~l 444 (705)
T 2o8r_A 413 E--------NNL-------RLSERMRRSGIRI-------VYSM--------------------------PGLKVHAKTAL 444 (705)
T ss_dssp ----------CH-------HHHHHHHHHTCEE-------EECC--------------------------TTCCBCCCEEE
T ss_pred h--------hhH-------HHHHHHHHCCCEE-------EEcc--------------------------CCCCceeEEEE
Confidence 0 011 1267788999976 3422 02368999999
Q ss_pred Eeee---------EEEEccccccCcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhhc
Q 004061 718 VDDE---------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASWH 774 (776)
Q Consensus 718 VDd~---------~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw~ 774 (776)
||++ ++.+|+.||+..++.. -+++++++.+++++. .+..++..+|.
T Consensus 445 Idrr~~~~g~~~~y~~igtGN~n~~tari--y~D~~l~t~~~~i~~---------dl~~vF~~~tg 499 (705)
T 2o8r_A 445 ILYHTPAGERPQGIALLSTGNFNETTARI--YSDTTLMTANTDIVH---------DVYRLFRILDG 499 (705)
T ss_dssp EEECCCSSSCCCEEEEEESSCSSCCCSSC--EEEEEEEECCHHHHH---------HHHHHHHHHTT
T ss_pred EecccccCCceeEEEeccccceeeeEEEE--EeeeeeeecChHHHH---------HHHHHHHHHhC
Confidence 9998 6889999999999984 489999999987653 56666666664
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=97.38 E-value=7.7e-05 Score=80.44 Aligned_cols=120 Identities=8% Similarity=-0.005 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCc
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~~~~g~~d~~ 638 (776)
...|.+.+.++|.+|++.|++..++... ..+...+.++++ |||+|++|++.. ++..
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~l------------------~~l~~~L~~a~~--RGV~Vrvi~~~~----~d~a 172 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEFF------------------ETIREDLIKTLE--RGVTVSLYIDKI----PDLS 172 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHHH------------------HHHHHHHHHHHH--TTCEEEEEESSC----CCCG
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHHH------------------HHHHHHHHHHHh--CCCEEEEEECCC----CChh
Confidence 4679999999999999999999765431 122233444544 559999999853 3321
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEeecCCccCCCcccccCCCCcccccccCceeceEEeeeeEEE
Q 004061 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (776)
Q Consensus 639 ~~~~~~~~~~~t~~~~~~~l~~~L~~~Gv~i~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lHsK~~IV 718 (776)
.. . +. ....++++ + . .+.+ ++|+
T Consensus 173 ~~---------~--------~~-~~~~~vR~--------~--------------------------~-~~p~----l~iv 195 (342)
T 3qph_A 173 EF---------K--------GK-GNFFVRQF--------Y--------------------------K-LNHL----IGMT 195 (342)
T ss_dssp GG---------S--------SS-SEEEEEEC--------S--------------------------C-CCSE----EEEE
T ss_pred hh---------h--------cc-ccceEEEE--------c--------------------------C-CCcE----EEEE
Confidence 00 0 00 01112221 1 0 1223 5999
Q ss_pred eeeEEEEccccc-c---CcCCCCCCcccceeeeeCCCcchhcccCCCCchhHHHHHhhh
Q 004061 719 DDEYVIMGSANI-N---QRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQEVTLVRASW 773 (776)
Q Consensus 719 Dd~~~~IGSaNl-d---~RS~~~n~d~Ei~v~i~d~~~~~~~~~~~~~~~i~~~r~~lw 773 (776)
|++++++|++|+ + .||+..+ +| +++|+++++ .++.|+...|
T Consensus 196 D~~~alv~~~~~~~~~~~rS~~~~--~e-aliv~~~~l-----------~l~~~f~~~w 240 (342)
T 3qph_A 196 DGKEVVTIQNATFDSIGPPSFKST--YP-EIIFSQYSL-----------IIEIFKESTL 240 (342)
T ss_dssp TTTEEEEECSSSCCSSCCCEEEEC--CH-HHHHHHHHH-----------HHHHHHHCEE
T ss_pred ECCEEEEecccccccccccccccc--cc-EEEEECHHH-----------HHHHHHhhee
Confidence 999999999998 3 4999844 88 999988765 4566666655
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=96.36 E-value=0.0031 Score=67.83 Aligned_cols=51 Identities=27% Similarity=0.210 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEecCC
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~D~~ 309 (776)
+.....+.++|.+|+++|++..+.-. ...+.++|.+|++|||+|++++ .+.
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~~-----------------l~~l~~~L~~a~~RGV~Vrvi~-~~~ 168 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSEF-----------------FETIREDLIKTLERGVTVSLYI-DKI 168 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHHH-----------------HHHHHHHHHHHHHTTCEEEEEE-SSC
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHHH-----------------HHHHHHHHHHHHhCCCEEEEEE-CCC
Confidence 66789999999999999999875211 1578899999999999999997 443
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=93.86 E-value=0.06 Score=54.36 Aligned_cols=49 Identities=24% Similarity=0.108 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHhccceEEEEEEeecccceeeecCCCCCCCCCCCcHHHHHHHHHhcCCEEEEEEe
Q 004061 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306 (776)
Q Consensus 241 ~~~~~~l~~~I~~A~~sI~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~~L~~aa~rGV~VriLv~ 306 (776)
+...+.+.++|++|+++|++..|. .. -..|.+.|.+|++|||.|+|+++
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~--e~---------------l~~l~~~L~~A~~rGV~V~liv~ 57 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS--EF---------------FETIREDLIKTLERGVTVSLYID 57 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG--GG---------------HHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEc
Confidence 677899999999999999997662 21 16899999999999999999993
No 69
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=92.73 E-value=0.34 Score=48.19 Aligned_cols=41 Identities=20% Similarity=0.116 Sum_probs=35.1
Q ss_pred eEEeeeeEEE---eeeEEEEccccccCcCCCCCCcccceeeeeCCC
Q 004061 709 IYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (776)
Q Consensus 709 ~~lHsK~~IV---Dd~~~~IGSaNld~RS~~~n~d~Ei~v~i~d~~ 751 (776)
..+|+|+... |+..++|||.||..--|..| -|++|++++..
T Consensus 102 Ri~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQN--vE~sllld~~T 145 (358)
T 2c1l_A 102 RILHAKLYGTSNNLGESLVVSSGNFTGPGMSQN--IEASLLLDNNT 145 (358)
T ss_dssp SCBCCEEEEEEETTEEEEEEESCCBSTTTTTTS--BEEEEEECHHH
T ss_pred eecchhhhcccCCCceEEEEecCCccccccccc--eeEEEEEcCCC
Confidence 4789998876 47789999999999999855 99999998753
No 70
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=88.00 E-value=2.7 Score=41.81 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEeccCCCCcccccchhccccce
Q 004061 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI 363 (776)
Q Consensus 284 ~~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~ 363 (776)
+.++...+.+...+|++|.+++ -+..+... .+++..+++.+-||+++..++..
T Consensus 50 gvrfy~~f~~h~~~Ggkv~~Il-GgstsQrl-----------TSKQavEElL~cGvev~IiNrkR--------------- 102 (358)
T 2c1l_A 50 GVRFYETFTEHINQGGRVIAIL-GGSTSQRL-----------SSRQVVEELLNRGVEVHIINRKR--------------- 102 (358)
T ss_dssp TTTTHHHHHHHHHTTCEEEEEE-ECCSSSCC-----------BBHHHHHHHHHTTCEEEEEECSS---------------
T ss_pred ceeecHHHHHHHhcCCcEEEEE-cccccccc-----------cHHHHHHHHHhcCCceEEeeeee---------------
Confidence 4799999999999999999998 54433331 24678888999999998765321
Q ss_pred ecccceEEEEccCCCCCCcceEEEEccccCCCccCCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh
Q 004061 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 443 (776)
Q Consensus 364 ~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~~w~D~~v~i~Gp 443 (776)
-.|.|+...-.. .....+||+-|++-.-+ -...+++++++-+
T Consensus 103 -i~HaK~Yg~~~n-----~g~~LIV~SgNfT~pGm--------------------------------sQNvE~sllld~~ 144 (358)
T 2c1l_A 103 -ILHAKLYGTSNN-----LGESLVVSSGNFTGPGM--------------------------------SQNIEASLLLDNN 144 (358)
T ss_dssp -CBCCEEEEEEET-----TEEEEEEESCCBSTTTT--------------------------------TTSBEEEEEECHH
T ss_pred -ecchhhhcccCC-----CceEEEEecCCcccccc--------------------------------ccceeEEEEEcCC
Confidence 169999987442 22388999999987322 2345788999888
Q ss_pred HHHHH
Q 004061 444 AAYDV 448 (776)
Q Consensus 444 av~~l 448 (776)
.+..|
T Consensus 145 Tt~~m 149 (358)
T 2c1l_A 145 TTQSM 149 (358)
T ss_dssp HHHHH
T ss_pred Ccccc
Confidence 76544
No 71
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=78.52 E-value=17 Score=35.82 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=32.4
Q ss_pred eeeeeccccCCCCCeeccEEEEEecCCC---ceEEEEEEEcCC
Q 004061 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDV 131 (776)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~f~~~~~~~~---~~l~i~v~~~~~ 131 (776)
..++|.|...+.+|.|+|++.+.++... .-|.+++++...
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 4468999999999999999999998763 238889887544
No 72
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=68.05 E-value=11 Score=37.75 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHhccceEEEecccccccCCCCCccccCCCCCccHHHHHHHHHHHHHhCCCeEEEEEecC
Q 004061 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (776)
Q Consensus 559 ~~~i~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~n~~~~~~a~~ia~~~~~grgV~V~Illp~ 629 (776)
...+.+-..++|++|++.|++..+. .. -..+...|.++.+ |||.|.|++..
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~lsi~~---------e~---------l~~l~~~L~~A~~--rGV~V~liv~~ 58 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIVVTPS---------EF---------FETIREDLIKTLE--RGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEECG---------GG---------HHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred HHHHHHHHHHHHHHhhhEEEEEeCH---------HH---------HHHHHHHHHHHHH--CCCEEEEEEcC
Confidence 4678899999999999999995322 11 1234555666655 45999999984
No 73
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=63.43 E-value=30 Score=41.70 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=43.8
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeccEEEEEecC---C-CceEEEEEEEcCCC-------------CCcee
Q 004061 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAH---P-LSNLEIQVKDDDVF-------------GAQII 137 (776)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~f~~~~~~---~-~~~l~i~v~~~~~~-------------~~~~i 137 (776)
.+-||++.+ ++... ..|..+.-..+|.|||-++|++.- | ...|.|+||+...- ....+
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~l 314 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPI 314 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEE
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceE
Confidence 567888776 44322 244444447789999999998654 3 33489999985321 13477
Q ss_pred EEEEccccccc
Q 004061 138 GTAAIPAHTIA 148 (776)
Q Consensus 138 G~~~i~l~~~~ 148 (776)
|.+.+++.+..
T Consensus 315 g~~~~~lFd~~ 325 (940)
T 2wxf_A 315 AWANLMLFDYK 325 (940)
T ss_dssp EEEEEESBCTT
T ss_pred EEEeeeEECCc
Confidence 77777776543
No 74
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=62.41 E-value=46 Score=30.91 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=64.8
Q ss_pred EEEEEECCeeeeeeccccCCCCCeeccEEEEEecCC--------CceEEEEEEEcCCCCCceeEEEEccccccc-cCcee
Q 004061 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-TGELI 153 (776)
Q Consensus 83 yv~v~~~~~~~~~T~~~~~~~~P~w~e~f~~~~~~~--------~~~l~i~v~~~~~~~~~~iG~~~i~l~~~~-~~~~~ 153 (776)
||.+.+-.-..+.|.++. ..+|.+|-+-++.+... ...+.|++..-.......+|.+.|+|.++. ..+.+
T Consensus 45 F~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~i 123 (156)
T 2yrb_A 45 FCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGRI 123 (156)
T ss_dssp EEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSCE
T ss_pred EEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCce
Confidence 555544332334565555 78999998888877553 134788887754333589999999999987 33446
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004061 154 SRWYDIIAPSGSPPKPGASIQLELKFTP 181 (776)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~~p 181 (776)
.+-.+|.+..+. +..-|.|...++...
T Consensus 124 ~g~~~L~g~~g~-~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 124 FCTASLIGTKGD-IPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEECBSSSC-CTTSEEEEEEEEEEE
T ss_pred EEEEEEEcCCCC-cceEEEEEEEEEEec
Confidence 666778666553 235799998888754
No 75
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=59.96 E-value=2.7 Score=47.43 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=30.5
Q ss_pred eceEEeeeeEEE---------e---e----eEEEEccccccCcCCCC----CCcccceeeee
Q 004061 707 FMIYVHAKGMIV---------D---D----EYVIMGSANINQRSMAG----SKDTEIAMGSY 748 (776)
Q Consensus 707 ~~~~lHsK~~IV---------D---d----~~~~IGSaNld~RS~~~----n~d~Ei~v~i~ 748 (776)
...+.|.|+++- | | .|+++|||||..-.+.. -+++|++|++-
T Consensus 427 ~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~P 488 (544)
T 1q32_A 427 GTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYH 488 (544)
T ss_dssp TTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEE
T ss_pred CCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEec
Confidence 357889999873 2 1 38999999998755431 14699999993
No 76
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=56.24 E-value=40 Score=41.14 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=43.1
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeccEEEEEecC---C-CceEEEEEEEcCCC-----CCceeEEEEcccc
Q 004061 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAH---P-LSNLEIQVKDDDVF-----GAQIIGTAAIPAH 145 (776)
Q Consensus 80 ~dpyv~v~~--~~~~---~~~T~~~~~~~~P~w~e~f~~~~~~---~-~~~l~i~v~~~~~~-----~~~~iG~~~i~l~ 145 (776)
.+.||++.+ +++. ..+|+.+ ...+|.|||-..|++.- | ...|.|+||+.... ....+|.+.++|.
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 577888887 3322 2233333 35678899999998654 3 33499999985542 1357888888876
Q ss_pred ccc
Q 004061 146 TIA 148 (776)
Q Consensus 146 ~~~ 148 (776)
+..
T Consensus 454 d~~ 456 (1091)
T 3hhm_A 454 DYT 456 (1091)
T ss_dssp CTT
T ss_pred ccC
Confidence 654
No 77
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=44.67 E-value=70 Score=38.63 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=42.3
Q ss_pred CCcEEEEEE--CCeeee--eeccccCCCCCeeccEEEEEecC---C-CceEEEEEEEcCCCC-----------------C
Q 004061 80 SDPYVTVVV--PQATVA--RTRVLKNSQEPVWNEHFNIPLAH---P-LSNLEIQVKDDDVFG-----------------A 134 (776)
Q Consensus 80 ~dpyv~v~~--~~~~~~--~T~~~~~~~~P~w~e~f~~~~~~---~-~~~l~i~v~~~~~~~-----------------~ 134 (776)
.+-||++.+ ++.... +|.-+.-+.+|.|||-++|++.- | ...|.++||+....+ .
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKA 317 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEEC--------------------
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecccCccccccccccccccccccc
Confidence 567888766 553332 34444446679999998888554 3 334889999743211 2
Q ss_pred ceeEEEEccccccc
Q 004061 135 QIIGTAAIPAHTIA 148 (776)
Q Consensus 135 ~~iG~~~i~l~~~~ 148 (776)
..+|.+.+++.+..
T Consensus 318 ~~lg~~n~~lfd~~ 331 (961)
T 1e7u_A 318 QLLYYVNLLLIDHR 331 (961)
T ss_dssp CEEEEEEEESBCTT
T ss_pred eeEEEEeeeeecCC
Confidence 46777777765543
No 78
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=33.78 E-value=13 Score=41.25 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.8
Q ss_pred eecccceEEEEccCCCCCCcceEEEEccccCCCccCCC
Q 004061 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (776)
Q Consensus 363 ~~r~H~K~~VID~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (776)
..+||.|++|.=.+ +....+|-+.|+...-|..
T Consensus 115 fGthHsKmmiL~y~-----~glRVVI~TANL~~~DW~~ 147 (464)
T 1jy1_A 115 FGTHHTKMMLLLYE-----EGLRVVIHTSNLIHADWHQ 147 (464)
T ss_dssp TCCBCCCEEEEEES-----SCEEEEEECCCBSGGGGTS
T ss_pred ccccchhhheeecC-----CceEEEEeCCCCChhHhcc
Confidence 35799999999654 2258999999999977743
No 79
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=29.87 E-value=42 Score=41.05 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=31.8
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeccEEEEEecCC----CceEEEEEEEc
Q 004061 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (776)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~w~e~f~~~~~~~----~~~l~i~v~~~ 129 (776)
.+-||++.+ ++... ..|..+.-..+|.|||-++|++.-. ...|.|+||+.
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 456666544 44322 2344444467899999999886642 23488999885
No 80
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=24.68 E-value=27 Score=38.51 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=31.9
Q ss_pred ceEEeeeeEE-Ee---------------eeEEEEccccccCcCCCC----CCcccceeeeeCCCc
Q 004061 708 MIYVHAKGMI-VD---------------DEYVIMGSANINQRSMAG----SKDTEIAMGSYQPHH 752 (776)
Q Consensus 708 ~~~lHsK~~I-VD---------------d~~~~IGSaNld~RS~~~----n~d~Ei~v~i~d~~~ 752 (776)
...-|.|+.+ +. =.|+++|||||..-.+.. -+++|++|++....+
T Consensus 351 ~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLSkaAWG~l~k~irsYElGVL~~p~~~ 415 (470)
T 3sq7_A 351 TTPANSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYHSRRL 415 (470)
T ss_dssp TCCBCCEEEEEEEC--------CCTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEEGGGS
T ss_pred CcCCceEEEEEecccccccccccCCCceeeEEEEecccCCHHHhhhhccCCcceeeeEEEccccc
Confidence 3567999888 22 139999999997633321 256999999977654
Done!