Query 004062
Match_columns 776
No_of_seqs 171 out of 326
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 16:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 2.2E-36 4.8E-41 263.5 -2.2 78 172-249 1-78 (79)
2 PF01833 TIG: IPT/TIG domain; 77.7 6.7 0.00015 32.7 5.8 45 680-724 1-45 (85)
3 cd00603 IPT_PCSR IPT domain of 75.0 10 0.00022 32.9 6.3 40 680-719 1-40 (90)
4 cd00102 IPT Immunoglobulin-lik 68.4 18 0.0004 30.6 6.4 39 680-719 1-40 (89)
5 PF10866 DUF2704: Protein of u 66.1 5.1 0.00011 40.6 2.9 31 586-616 123-160 (168)
6 PF09099 Qn_am_d_aIII: Quinohe 61.6 12 0.00025 34.1 4.0 27 679-705 1-27 (81)
7 smart00429 IPT ig-like, plexin 59.4 14 0.0003 32.0 4.0 39 680-719 2-40 (90)
8 cd01180 IPT_plexin_repeat1 Fir 58.6 15 0.00032 33.1 4.2 40 680-719 1-42 (94)
9 cd01179 IPT_plexin_repeat2 Sec 52.7 21 0.00045 31.4 4.1 39 680-719 1-39 (85)
10 cd01181 IPT_plexin_repeat3 Thi 39.0 48 0.001 30.5 4.4 41 680-720 1-42 (99)
11 cd02849 CGTase_C_term Cgtase ( 33.6 1.4E+02 0.0031 26.7 6.4 75 679-771 2-79 (81)
12 PRK07217 replication factor A; 33.2 27 0.00059 38.8 2.1 81 126-214 143-232 (311)
13 PF14901 Jiv90: Cleavage induc 32.6 20 0.00043 33.7 0.9 19 210-228 26-44 (94)
14 PRK00241 nudC NADH pyrophospha 31.0 17 0.00036 38.7 0.1 37 185-222 92-128 (256)
15 COG2816 NPY1 NTP pyrophosphohy 29.6 20 0.00043 39.3 0.3 35 186-221 105-139 (279)
16 PF05587 Anth_Ig: Anthrax rece 29.5 18 0.00039 34.5 0.0 37 681-717 7-45 (105)
17 PF09297 zf-NADH-PPase: NADH p 28.2 20 0.00042 26.7 0.0 31 190-221 1-31 (32)
18 cd02969 PRX_like1 Peroxiredoxi 25.2 1E+02 0.0022 29.8 4.3 47 566-612 117-169 (171)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=2.2e-36 Score=263.46 Aligned_cols=78 Identities=65% Similarity=1.119 Sum_probs=63.1
Q ss_pred CcccCCChhhhhcchhhhccccccccccCCcEEeECCccchHhhhcccCCCCCCccCccchHHHHHhhHHhhhccCCC
Q 004062 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 249 (776)
Q Consensus 172 ~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~hn~RRRk~qp 249 (776)
+||||||++||+.+|.||+||||||.|+||++|+++|..+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999865
No 2
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=77.66 E-value=6.7 Score=32.71 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=40.1
Q ss_pred CeeeEecceEEecCCeeEEEEEeeccCCCCceEEEeecCccceee
Q 004062 680 PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQE 724 (776)
Q Consensus 680 P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~E 724 (776)
|.|.+|.|-.-...+...+.|.|.||......+.|.+.+......
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~~~~ 45 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQCTVI 45 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEEEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEeeeEE
Confidence 789999998888878999999999998888999999998877655
No 3
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=74.96 E-value=10 Score=32.91 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=35.2
Q ss_pred CeeeEecceEEecCCeeEEEEEeeccCCCCceEEEeecCc
Q 004062 680 PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGG 719 (776)
Q Consensus 680 P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRlLcs~~Gk 719 (776)
|+|..++|..-....-+.++++|.||.....++-|.|.|.
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~ 40 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGV 40 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCE
Confidence 7899999999999899999999999999877778888554
No 4
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=68.44 E-value=18 Score=30.63 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=32.7
Q ss_pred CeeeEecceEEecCCeeEEEEEeeccCCCCceEEEee-cCc
Q 004062 680 PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTF-MGG 719 (776)
Q Consensus 680 P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRlLcs~-~Gk 719 (776)
|+|..|.|..-....-+.+.|+|.||.... ++-|.| .+.
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~-~~~v~~~g~~ 40 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGS-NLRVTFGGGV 40 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCC-cEEEEEeCCC
Confidence 789999999999888899999999997754 777778 443
No 5
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=66.10 E-value=5.1 Score=40.57 Aligned_cols=31 Identities=32% Similarity=0.713 Sum_probs=25.2
Q ss_pred hhHHHHHHHhcCCCc-------cccccccCCceEEeee
Q 004062 586 TLRKEIYNWLSNSPS-------EMESYIRPGCVILSLY 616 (776)
Q Consensus 586 ~LR~QIl~WLs~sPt-------dmEgYIRPGCviLTIy 616 (776)
.++.+|++.|.+.-+ .--|||.|.|||+|.-
T Consensus 123 T~kn~vLnVlnn~L~d~~~~~d~~~~yikpnciv~tf~ 160 (168)
T PF10866_consen 123 TFKNAVLNVLNNELSDEANEYDTSAGYIKPNCIVLTFN 160 (168)
T ss_pred HHHHHHHHHHhhhccccccccccccCccCCCeEEEeee
Confidence 578899999988554 2469999999999963
No 6
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=61.58 E-value=12 Score=34.11 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=25.1
Q ss_pred CCeeeEecceEEecCCeeEEEEEeecc
Q 004062 679 SPELISVSPLAVVGGQELSFKLRGRNL 705 (776)
Q Consensus 679 ~P~I~sV~PiAv~ag~~~~f~v~G~NL 705 (776)
.|+|..|+|-.+.+|.++++++-|.||
T Consensus 1 ~p~i~aV~P~~lkaG~~t~vti~Gt~L 27 (81)
T PF09099_consen 1 APTILAVSPAGLKAGEETTVTIVGTGL 27 (81)
T ss_dssp SSEEEEEESSEEETTCEEEEEEEEES-
T ss_pred CCeEEEECchhccCCCeEEEEEEecCc
Confidence 489999999999999999999999999
No 7
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=59.40 E-value=14 Score=31.97 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=32.5
Q ss_pred CeeeEecceEEecCCeeEEEEEeeccCCCCceEEEeecCc
Q 004062 680 PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGG 719 (776)
Q Consensus 680 P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRlLcs~~Gk 719 (776)
|+|..+.|-......-+.++|+|.||.. .+.+.|.+...
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-~~~~~~~~~~~ 40 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDS-ISVVFVEVGVG 40 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCc-ceEEEEEEEeC
Confidence 8999999998887666699999999986 77777777653
No 8
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=58.61 E-value=15 Score=33.12 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=33.5
Q ss_pred CeeeEecceEEecCCeeEEEEEeeccCCCC--ceEEEeecCc
Q 004062 680 PELISVSPLAVVGGQELSFKLRGRNLTNLG--TKIHCTFMGG 719 (776)
Q Consensus 680 P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~--tRlLcs~~Gk 719 (776)
|+|..|+|.--....-+.++++|.||.... .++.+.+.|.
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~ 42 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGV 42 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCE
Confidence 789999999999999999999999999874 4555666553
No 9
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=52.75 E-value=21 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=33.9
Q ss_pred CeeeEecceEEecCCeeEEEEEeeccCCCCceEEEeecCc
Q 004062 680 PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGG 719 (776)
Q Consensus 680 P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRlLcs~~Gk 719 (776)
|.|.++.|..-....-+.+.++|.||... ..+.|.+.|.
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~-~~~~V~ig~~ 39 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAG-SSVRVTVGGQ 39 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCC-CeEEEEECCe
Confidence 78999999999999999999999999764 5578888775
No 10
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=39.03 E-value=48 Score=30.49 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=34.2
Q ss_pred CeeeEecceEEecCCeeEEEEEeeccCCCC-ceEEEeecCcc
Q 004062 680 PELISVSPLAVVGGQELSFKLRGRNLTNLG-TKIHCTFMGGY 720 (776)
Q Consensus 680 P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~-tRlLcs~~GkY 720 (776)
|.|..|+|..=..+.-+.++|+|.||..=. -++-+.+.|.+
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~ 42 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVE 42 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcccccEEEEEECCce
Confidence 789999999888888899999999999844 37777788753
No 11
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=33.62 E-value=1.4e+02 Score=26.73 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCeeeEecceEEecCCeeEEEEEeeccCCCCceEEEeecCccceeeeccccCCCCcccceeEeeeeecCCCCCC-CcceE
Q 004062 679 SPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSV-LGRFF 757 (776)
Q Consensus 679 ~P~I~sV~PiAv~ag~~~~f~v~G~NL~~p~tRlLcs~~GkYL~~E~~~~~~~g~~~d~~~~~~~~~~~s~P~~-~Gr~F 757 (776)
.|.|.+|.|.....|.. +.+.|.++.....++ .|.|... ++.. +. ...| .+..|.. .|-..
T Consensus 2 ~P~I~~i~P~~g~~G~~--VtI~G~gFg~~~~~V--~~g~~~a--~v~s--~s---dt~I-------~~~vP~~~aG~~~ 63 (81)
T cd02849 2 TPLIGHVGPMMGKAGNT--VTISGEGFGSAPGTV--YFGTTAA--TVIS--WS---DTRI-------VVTVPNVPAGNYD 63 (81)
T ss_pred CCEEeeEcCCCCCCCCE--EEEEEECCCCCCcEE--EECCEEe--EEEE--EC---CCEE-------EEEeCCCCCceEE
Confidence 58999999999988875 577777777544444 5555332 2332 11 1122 2333444 55555
Q ss_pred EEEe--cccCCCccce
Q 004062 758 IEVQ--LVDRLGLFAF 771 (776)
Q Consensus 758 IEVE--ngf~s~ffP~ 771 (776)
|=|+ +|-.|+.+.|
T Consensus 64 V~V~~~~G~~Sn~~~f 79 (81)
T cd02849 64 VTVKTADGATSNGYNF 79 (81)
T ss_pred EEEEeCCCcccCcEee
Confidence 5555 6766777665
No 12
>PRK07217 replication factor A; Reviewed
Probab=33.16 E-value=27 Score=38.79 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=47.4
Q ss_pred CCCCccccccCCcccccccCCCCCCCCC-CCCcccccCCCCCCCCCCCcccCCChhhhhcchhhhccccccccccCCc--
Q 004062 126 EDDGRLDLNLGGGLTAVDVEQPEPPVVT-SKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKST-- 202 (776)
Q Consensus 126 ~~~~~l~l~lgg~~~~~~~~~~~~~~~~-~~~~kr~R~~~~g~~~~~~CQVdGC~~dLs~~k~Y~rRhrVCe~H~kA~-- 202 (776)
+-.++++||||..+......+...+... .......=.-++|++-..+|-.+||+.-|+. -.|+.|=+..
T Consensus 143 ey~G~~~lnlg~~t~I~~~de~IeV~~~~vei~G~lVdi~~GsglI~rCP~~~C~Rvl~~--------g~C~~HG~ve~~ 214 (311)
T PRK07217 143 EYQGRFSVKLNRTTSIEELDEDIEVGDDEVEVEGALVDIQSGSGLIKRCPEEDCTRVLQN--------GRCSEHGKVEGE 214 (311)
T ss_pred eECCEEEEEeCCceEEEeCCCCccccCccccceeEEEEEeCCCCCeecCCccccCccccC--------CCCCCCCCcCCc
Confidence 4457899999987655432332111111 1111111123556677889999999999954 4799998765
Q ss_pred ------EEeECCccchHh
Q 004062 203 ------KALVGKQMQRFC 214 (776)
Q Consensus 203 ------~V~v~G~~qRFC 214 (776)
.|+=+|.....|
T Consensus 215 ~DLrik~vlDDGt~~~~~ 232 (311)
T PRK07217 215 FDLRIKGVLDDGEEVQEV 232 (311)
T ss_pred eeeEEEEEEECCCCeEEE
Confidence 244466554443
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=32.61 E-value=20 Score=33.67 Aligned_cols=19 Identities=42% Similarity=0.753 Sum_probs=15.4
Q ss_pred cchHhhhcccCCCCCCccC
Q 004062 210 MQRFCQQCSRFHPLSEFDE 228 (776)
Q Consensus 210 ~qRFCQQCsrFH~L~eFDg 228 (776)
.-|+||+|..+|+-.+=|.
T Consensus 26 ~AR~C~~C~~~H~Ak~gDi 44 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGDI 44 (94)
T ss_pred hhHhHHHhhhhcccccCCe
Confidence 5699999999998766543
No 14
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=30.98 E-value=17 Score=38.74 Aligned_cols=37 Identities=14% Similarity=0.378 Sum_probs=28.1
Q ss_pred chhhhccccccccccCCcEEeECCccchHhhhcccCCC
Q 004062 185 AKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222 (776)
Q Consensus 185 ~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~ 222 (776)
+-.+|++||-|..+-....+. .+...|.|..|++.|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCeec-CCceeEECCCCCCEEC
Confidence 457999999998777665554 4456689999997773
No 15
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=29.56 E-value=20 Score=39.32 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=29.0
Q ss_pred hhhhccccccccccCCcEEeECCccchHhhhcccCC
Q 004062 186 KDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFH 221 (776)
Q Consensus 186 k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 221 (776)
-.+|++||.| -++..+.....|...|-|++|+.-|
T Consensus 105 ~~w~~~~RFC-g~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 105 LEWYRSHRFC-GRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHhhCcCC-CCCCCcCccccCceeeeCCCCCCcc
Confidence 3678999999 5667777788888889999999766
No 16
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=29.53 E-value=18 Score=34.54 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=0.0
Q ss_pred eeeEecceEEecCCeeEEEEEee--ccCCCCceEEEeec
Q 004062 681 ELISVSPLAVVGGQELSFKLRGR--NLTNLGTKIHCTFM 717 (776)
Q Consensus 681 ~I~sV~PiAv~ag~~~~f~v~G~--NL~~p~tRlLcs~~ 717 (776)
+|+.|.|--|=+|++.+++|+|. +.+.....+||+|.
T Consensus 7 Eil~~ePSsvC~ge~f~Vvv~G~GF~~~~~~d~ViC~F~ 45 (105)
T PF05587_consen 7 EILSVEPSSVCVGESFQVVVRGNGFNNARNVDQVICRFK 45 (105)
T ss_dssp ---------------------------------------
T ss_pred eEEEEcCCceECCCceEEEEECccccccCCCCeEEEEEE
Confidence 79999999999999999999886 55567778999984
No 17
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=28.20 E-value=20 Score=26.75 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=17.0
Q ss_pred ccccccccccCCcEEeECCccchHhhhcccCC
Q 004062 190 RRHKVCELHSKSTKALVGKQMQRFCQQCSRFH 221 (776)
Q Consensus 190 rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 221 (776)
++||-|. ..-++++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~-~CG~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCG-RCGAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-T-TT--BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccC-cCCccccCCCCcCEeECCCCcCEe
Confidence 3577774 445666666667778888887644
No 18
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=25.20 E-value=1e+02 Score=29.76 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=33.9
Q ss_pred CccceeEEE-ecCCCCCC-----CChhhHHHHHHHhcCCCccccccccCCceE
Q 004062 566 DCTGRIIFK-LFDKDPSQ-----FPGTLRKEIYNWLSNSPSEMESYIRPGCVI 612 (776)
Q Consensus 566 ~rT~RIsFK-LF~k~P~d-----fP~~LR~QIl~WLs~sPtdmEgYIRPGCvi 612 (776)
++.|||++. .++..... =...|++.|..||+..+...|--+=+||.+
T Consensus 117 d~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 169 (171)
T cd02969 117 DPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSI 169 (171)
T ss_pred CCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCccc
Confidence 467888864 11111111 124699999999999999999999999975
Done!