Query 004063
Match_columns 776
No_of_seqs 28 out of 30
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 16:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 98.5 0.00028 6.1E-09 81.2 32.0 165 420-584 677-841 (1179)
2 TIGR02168 SMC_prok_B chromosom 98.4 0.00017 3.8E-09 82.8 27.6 100 420-519 684-783 (1179)
3 TIGR02169 SMC_prok_A chromosom 98.4 0.0003 6.5E-09 81.6 28.9 168 419-586 673-845 (1164)
4 PRK02224 chromosome segregatio 98.3 0.00062 1.3E-08 78.6 29.9 12 207-218 25-36 (880)
5 TIGR02169 SMC_prok_A chromosom 98.3 0.0021 4.5E-08 74.8 34.2 47 420-466 237-283 (1164)
6 COG1196 Smc Chromosome segrega 98.1 0.0046 1E-07 74.8 32.1 70 422-491 732-801 (1163)
7 KOG0161 Myosin class II heavy 98.1 0.0013 2.8E-08 83.0 27.6 237 444-718 890-1144(1930)
8 COG1196 Smc Chromosome segrega 98.0 0.0073 1.6E-07 73.1 31.4 242 421-717 668-923 (1163)
9 PRK02224 chromosome segregatio 97.9 0.018 3.9E-07 66.8 31.6 165 420-584 258-429 (880)
10 PF07888 CALCOCO1: Calcium bin 97.9 0.035 7.5E-07 63.5 31.8 153 425-584 141-300 (546)
11 KOG0161 Myosin class II heavy 97.9 0.0017 3.6E-08 82.0 23.5 159 426-584 1371-1543(1930)
12 TIGR00606 rad50 rad50. This fa 97.8 0.0053 1.2E-07 75.0 25.1 163 419-581 743-930 (1311)
13 PF09726 Macoilin: Transmembra 97.8 0.14 3.1E-06 60.1 35.1 237 416-720 414-657 (697)
14 PF07888 CALCOCO1: Calcium bin 97.7 0.004 8.7E-08 70.8 21.5 60 664-723 403-462 (546)
15 PRK11637 AmiB activator; Provi 97.6 0.031 6.7E-07 60.7 25.1 79 417-495 44-122 (428)
16 PRK03918 chromosome segregatio 97.5 0.25 5.4E-06 57.4 32.6 63 422-484 202-274 (880)
17 PHA02562 46 endonuclease subun 97.4 0.11 2.3E-06 57.2 27.0 34 462-495 174-207 (562)
18 PF05701 WEMBL: Weak chloropla 97.4 0.22 4.7E-06 56.3 28.7 217 463-716 282-512 (522)
19 PF08317 Spc7: Spc7 kinetochor 97.3 0.022 4.9E-07 60.2 19.5 46 538-583 243-292 (325)
20 KOG0250 DNA repair protein RAD 97.3 0.042 9E-07 66.6 23.4 140 444-583 298-445 (1074)
21 PHA02562 46 endonuclease subun 97.3 0.07 1.5E-06 58.6 23.0 75 510-584 305-382 (562)
22 TIGR00606 rad50 rad50. This fa 97.2 0.036 7.9E-07 68.0 22.7 125 458-584 891-1015(1311)
23 TIGR01843 type_I_hlyD type I s 97.2 0.091 2E-06 54.9 22.5 74 519-592 197-282 (423)
24 COG0419 SbcC ATPase involved i 97.2 0.66 1.4E-05 55.3 31.3 36 549-584 406-441 (908)
25 TIGR01843 type_I_hlyD type I s 97.1 0.14 3.1E-06 53.5 22.7 63 524-586 195-265 (423)
26 PRK11637 AmiB activator; Provi 97.1 0.23 5.1E-06 54.1 25.0 73 420-492 54-126 (428)
27 PF12128 DUF3584: Protein of u 97.1 0.12 2.5E-06 63.5 25.1 56 665-720 814-869 (1201)
28 TIGR02680 conserved hypothetic 97.1 1.4 3.1E-05 55.1 35.0 111 408-523 208-323 (1353)
29 KOG0971 Microtubule-associated 97.1 0.085 1.8E-06 63.3 22.4 107 470-576 326-440 (1243)
30 PF15070 GOLGA2L5: Putative go 97.1 0.29 6.4E-06 56.9 26.5 39 664-702 346-384 (617)
31 KOG0980 Actin-binding protein 97.0 0.23 5E-06 59.6 25.3 158 424-585 334-519 (980)
32 PRK09039 hypothetical protein; 97.0 0.091 2E-06 56.6 20.3 74 506-579 111-184 (343)
33 smart00787 Spc7 Spc7 kinetocho 96.9 0.082 1.8E-06 56.6 19.3 77 506-582 206-286 (312)
34 PRK03918 chromosome segregatio 96.9 0.26 5.6E-06 57.2 24.7 74 503-576 251-330 (880)
35 COG1579 Zn-ribbon protein, pos 96.9 0.04 8.7E-07 57.5 16.3 118 469-586 10-136 (239)
36 KOG1029 Endocytic adaptor prot 96.9 0.32 6.9E-06 58.0 25.0 140 549-730 468-620 (1118)
37 PRK04863 mukB cell division pr 96.9 0.69 1.5E-05 58.6 29.3 50 543-592 439-489 (1486)
38 PF12718 Tropomyosin_1: Tropom 96.9 0.18 3.9E-06 48.5 19.3 132 444-579 10-141 (143)
39 COG1579 Zn-ribbon protein, pos 96.9 0.23 5.1E-06 52.0 21.4 159 429-587 12-187 (239)
40 PF09730 BicD: Microtubule-ass 96.9 1.6 3.5E-05 51.9 37.1 168 411-581 256-454 (717)
41 PRK04778 septation ring format 96.9 0.12 2.5E-06 58.8 20.7 146 439-584 315-465 (569)
42 KOG0964 Structural maintenance 96.8 1 2.2E-05 55.0 28.2 153 441-593 230-383 (1200)
43 PF15619 Lebercilin: Ciliary p 96.8 0.74 1.6E-05 46.6 23.5 162 420-585 19-189 (194)
44 PRK04863 mukB cell division pr 96.7 0.13 2.8E-06 64.8 21.4 146 419-564 313-488 (1486)
45 KOG0612 Rho-associated, coiled 96.7 0.17 3.8E-06 62.2 21.5 169 417-588 462-651 (1317)
46 PF00038 Filament: Intermediat 96.7 0.13 2.7E-06 53.1 17.6 48 673-720 211-258 (312)
47 PF12128 DUF3584: Protein of u 96.6 3 6.6E-05 51.6 32.5 57 664-720 607-663 (1201)
48 PRK09039 hypothetical protein; 96.6 0.15 3.2E-06 55.0 18.3 108 416-530 49-156 (343)
49 PF09789 DUF2353: Uncharacteri 96.5 0.11 2.3E-06 56.3 16.4 141 435-584 66-220 (319)
50 PF05622 HOOK: HOOK protein; 96.4 0.00082 1.8E-08 77.2 0.0 163 424-586 197-403 (713)
51 COG4372 Uncharacterized protei 96.4 0.1 2.2E-06 58.2 15.6 104 470-580 75-178 (499)
52 PF04156 IncA: IncA protein; 96.4 0.19 4E-06 48.7 15.7 66 466-531 85-150 (191)
53 PF14662 CCDC155: Coiled-coil 96.3 1.4 2.9E-05 45.4 22.2 126 422-554 10-138 (193)
54 PF09726 Macoilin: Transmembra 96.3 0.43 9.2E-06 56.3 21.2 130 449-584 461-611 (697)
55 KOG0250 DNA repair protein RAD 96.3 0.5 1.1E-05 57.9 21.9 166 418-584 233-432 (1074)
56 PF04111 APG6: Autophagy prote 96.3 0.063 1.4E-06 57.2 13.2 115 470-584 10-130 (314)
57 PRK10361 DNA recombination pro 96.3 0.59 1.3E-05 53.2 21.1 127 447-574 39-179 (475)
58 PF08614 ATG16: Autophagy prot 96.2 0.056 1.2E-06 53.4 11.7 116 420-535 74-189 (194)
59 PF04111 APG6: Autophagy prote 96.2 0.065 1.4E-06 57.1 12.8 120 422-577 11-130 (314)
60 KOG0994 Extracellular matrix g 96.2 0.73 1.6E-05 57.0 22.5 131 455-585 1605-1742(1758)
61 KOG0996 Structural maintenance 96.2 2.8 6.1E-05 52.2 27.3 59 666-724 544-602 (1293)
62 PF08614 ATG16: Autophagy prot 96.2 0.021 4.5E-07 56.3 8.4 131 457-587 19-171 (194)
63 PF00261 Tropomyosin: Tropomyo 96.2 1.8 4E-05 44.2 23.8 45 422-466 3-47 (237)
64 TIGR01000 bacteriocin_acc bact 96.2 1.2 2.6E-05 49.0 22.4 74 519-592 237-327 (457)
65 PF13851 GAS: Growth-arrest sp 96.1 1.2 2.5E-05 45.2 20.1 104 470-573 28-134 (201)
66 smart00787 Spc7 Spc7 kinetocho 96.1 1.2 2.7E-05 47.9 21.4 9 410-418 101-109 (312)
67 cd07651 F-BAR_PombeCdc15_like 96.0 0.89 1.9E-05 45.9 19.1 134 439-578 58-206 (236)
68 KOG0933 Structural maintenance 96.0 0.76 1.6E-05 56.2 21.3 167 417-586 738-932 (1174)
69 KOG0977 Nuclear envelope prote 96.0 0.31 6.8E-06 56.1 17.5 129 448-576 56-213 (546)
70 PF08317 Spc7: Spc7 kinetochor 96.0 1.1 2.5E-05 47.7 20.5 72 513-584 211-286 (325)
71 PF14197 Cep57_CLD_2: Centroso 96.0 0.066 1.4E-06 46.4 9.4 65 467-531 3-67 (69)
72 TIGR02680 conserved hypothetic 96.0 1.1 2.4E-05 56.1 23.4 95 420-517 230-324 (1353)
73 PF12718 Tropomyosin_1: Tropom 95.9 1.1 2.4E-05 43.3 18.2 127 451-584 3-132 (143)
74 PF09730 BicD: Microtubule-ass 95.8 6.1 0.00013 47.3 31.7 122 439-578 39-171 (717)
75 PRK11281 hypothetical protein; 95.8 0.25 5.4E-06 60.8 16.8 49 469-517 128-176 (1113)
76 KOG0995 Centromere-associated 95.8 0.92 2E-05 52.6 20.1 58 666-723 448-512 (581)
77 KOG0996 Structural maintenance 95.8 1.3 2.9E-05 54.8 22.4 149 422-573 414-569 (1293)
78 KOG4674 Uncharacterized conser 95.8 9.8 0.00021 49.6 31.9 213 453-726 379-607 (1822)
79 PF00261 Tropomyosin: Tropomyo 95.8 1.6 3.6E-05 44.5 20.0 83 502-584 125-221 (237)
80 PF13514 AAA_27: AAA domain 95.8 0.8 1.7E-05 55.8 20.7 42 672-713 453-494 (1111)
81 KOG4673 Transcription factor T 95.8 3.7 8E-05 49.1 24.7 243 456-734 399-647 (961)
82 KOG0977 Nuclear envelope prote 95.8 0.7 1.5E-05 53.4 19.0 274 423-725 66-387 (546)
83 PRK04778 septation ring format 95.7 1.1 2.4E-05 51.1 20.5 158 417-576 253-413 (569)
84 KOG4674 Uncharacterized conser 95.7 0.69 1.5E-05 59.3 20.4 257 423-716 62-336 (1822)
85 KOG0933 Structural maintenance 95.7 0.63 1.4E-05 56.8 19.1 164 415-578 782-945 (1174)
86 PF13166 AAA_13: AAA domain 95.7 1.3 2.7E-05 50.7 21.0 119 464-584 324-455 (712)
87 PF09755 DUF2046: Uncharacteri 95.7 4.1 8.8E-05 44.6 32.1 41 423-463 23-63 (310)
88 PF10186 Atg14: UV radiation r 95.7 1.5 3.2E-05 44.2 19.0 25 421-445 21-45 (302)
89 PF10186 Atg14: UV radiation r 95.6 1.3 2.9E-05 44.5 18.5 9 651-659 225-233 (302)
90 COG1842 PspA Phage shock prote 95.6 1.5 3.3E-05 45.5 19.1 115 421-558 25-139 (225)
91 PF12795 MscS_porin: Mechanose 95.5 1.1 2.3E-05 45.7 17.5 165 419-583 37-208 (240)
92 PF10174 Cast: RIM-binding pro 95.5 2.6 5.7E-05 50.6 23.1 55 448-502 336-390 (775)
93 KOG0976 Rho/Rac1-interacting s 95.5 4.4 9.6E-05 49.1 24.4 150 426-585 47-205 (1265)
94 PF04849 HAP1_N: HAP1 N-termin 95.5 1 2.2E-05 48.9 18.0 163 419-588 61-255 (306)
95 TIGR03007 pepcterm_ChnLen poly 95.5 0.84 1.8E-05 50.1 17.8 34 421-454 198-231 (498)
96 PF05557 MAD: Mitotic checkpoi 95.4 0.0043 9.3E-08 71.5 0.0 55 667-721 367-421 (722)
97 PF00769 ERM: Ezrin/radixin/mo 95.4 0.78 1.7E-05 47.6 16.2 108 471-585 14-121 (246)
98 PF10174 Cast: RIM-binding pro 95.4 4.2 9.1E-05 48.9 24.0 103 450-552 303-405 (775)
99 PF04849 HAP1_N: HAP1 N-termin 95.3 1.8 3.8E-05 47.1 19.0 151 414-581 154-304 (306)
100 PF05701 WEMBL: Weak chloropla 95.1 5.7 0.00012 45.3 23.4 147 440-586 287-440 (522)
101 cd07647 F-BAR_PSTPIP The F-BAR 95.1 3.3 7.1E-05 42.3 19.6 130 438-573 57-202 (239)
102 COG4942 Membrane-bound metallo 95.1 8 0.00017 43.9 24.3 61 524-584 184-244 (420)
103 KOG0979 Structural maintenance 95.0 2.5 5.4E-05 51.9 20.9 177 409-588 142-360 (1072)
104 PF00038 Filament: Intermediat 95.0 5.2 0.00011 41.4 31.9 242 423-715 28-306 (312)
105 PF05667 DUF812: Protein of un 94.9 6.2 0.00014 46.2 23.3 158 429-586 344-531 (594)
106 TIGR03007 pepcterm_ChnLen poly 94.9 5.4 0.00012 44.0 21.7 33 496-528 260-292 (498)
107 cd07655 F-BAR_PACSIN The F-BAR 94.9 4.4 9.5E-05 42.1 19.8 130 438-573 61-217 (258)
108 COG4942 Membrane-bound metallo 94.8 5.9 0.00013 44.9 22.0 36 422-457 89-125 (420)
109 KOG0976 Rho/Rac1-interacting s 94.7 9.1 0.0002 46.7 24.0 59 658-725 457-521 (1265)
110 PF04156 IncA: IncA protein; 94.7 1.8 3.8E-05 42.0 15.7 30 453-482 93-122 (191)
111 PF10481 CENP-F_N: Cenp-F N-te 94.7 4.4 9.5E-05 44.0 19.6 102 420-528 18-126 (307)
112 KOG0995 Centromere-associated 94.7 7 0.00015 45.7 22.5 24 544-567 337-360 (581)
113 PF11932 DUF3450: Protein of u 94.6 3 6.5E-05 42.8 17.9 63 439-501 33-95 (251)
114 PF05667 DUF812: Protein of un 94.6 5.3 0.00012 46.7 21.8 91 430-520 324-417 (594)
115 TIGR01010 BexC_CtrB_KpsE polys 94.6 2.1 4.6E-05 45.5 17.2 64 469-532 170-235 (362)
116 PF09755 DUF2046: Uncharacteri 94.5 4.6 0.0001 44.1 19.7 68 519-586 136-204 (310)
117 KOG0612 Rho-associated, coiled 94.5 14 0.0003 46.7 25.5 29 695-723 789-817 (1317)
118 KOG1103 Predicted coiled-coil 94.5 8 0.00017 43.5 21.5 68 437-504 106-174 (561)
119 KOG0999 Microtubule-associated 94.4 14 0.0003 43.7 24.9 121 451-578 92-244 (772)
120 COG5185 HEC1 Protein involved 94.4 3.4 7.4E-05 47.6 19.0 42 665-706 488-529 (622)
121 cd07671 F-BAR_PSTPIP1 The F-BA 94.4 3.9 8.4E-05 42.5 18.2 120 448-573 78-202 (242)
122 KOG0999 Microtubule-associated 94.3 8.3 0.00018 45.4 22.0 107 478-584 109-218 (772)
123 KOG4593 Mitotic checkpoint pro 94.3 7.5 0.00016 46.4 22.1 110 475-585 164-293 (716)
124 PF05557 MAD: Mitotic checkpoi 94.3 0.042 9E-07 63.6 4.3 72 505-576 358-429 (722)
125 PF05622 HOOK: HOOK protein; 94.2 0.013 2.8E-07 67.7 0.0 29 501-529 329-357 (713)
126 KOG0980 Actin-binding protein 94.1 10 0.00022 46.5 22.9 60 666-725 684-755 (980)
127 KOG0243 Kinesin-like protein [ 94.1 3.2 6.9E-05 51.2 19.2 135 443-584 443-584 (1041)
128 TIGR01000 bacteriocin_acc bact 94.1 5.7 0.00012 43.9 19.8 53 536-588 240-312 (457)
129 PF13514 AAA_27: AAA domain 94.0 20 0.00044 44.1 30.9 48 546-593 452-499 (1111)
130 PF01576 Myosin_tail_1: Myosin 94.0 0.015 3.3E-07 68.9 0.0 122 452-573 353-474 (859)
131 cd07653 F-BAR_CIP4-like The F- 93.9 7.8 0.00017 39.1 18.9 76 438-513 62-149 (251)
132 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.9 5.7 0.00012 37.5 18.5 34 551-584 96-129 (132)
133 PRK10476 multidrug resistance 93.8 1.9 4.1E-05 45.5 14.9 27 566-592 189-219 (346)
134 KOG0994 Extracellular matrix g 93.8 13 0.00029 46.8 23.3 38 680-721 1695-1732(1758)
135 PF00769 ERM: Ezrin/radixin/mo 93.7 4.8 0.0001 41.9 17.3 22 564-585 107-128 (246)
136 KOG1029 Endocytic adaptor prot 93.6 15 0.00031 44.9 22.7 56 668-723 497-562 (1118)
137 PF05911 DUF869: Plant protein 93.6 4.1 9E-05 49.0 18.8 111 425-535 97-207 (769)
138 PF11559 ADIP: Afadin- and alp 93.6 4.6 0.0001 38.4 15.7 60 418-484 29-88 (151)
139 KOG0978 E3 ubiquitin ligase in 93.6 11 0.00025 45.0 21.9 146 421-566 401-572 (698)
140 PF15070 GOLGA2L5: Putative go 93.6 7.3 0.00016 45.8 20.3 94 423-527 83-176 (617)
141 KOG0243 Kinesin-like protein [ 93.5 1.3 2.7E-05 54.5 14.5 98 469-566 404-510 (1041)
142 KOG0946 ER-Golgi vesicle-tethe 93.5 6.4 0.00014 47.8 19.7 89 439-527 669-760 (970)
143 TIGR01005 eps_transp_fam exopo 93.4 20 0.00043 42.0 26.1 75 466-546 191-265 (754)
144 PF06160 EzrA: Septation ring 93.3 15 0.00032 42.3 22.0 118 439-556 311-431 (560)
145 PF04012 PspA_IM30: PspA/IM30 93.3 9.7 0.00021 38.0 19.7 34 423-456 26-59 (221)
146 TIGR03185 DNA_S_dndD DNA sulfu 93.3 20 0.00043 41.7 25.8 72 472-543 205-287 (650)
147 PRK01156 chromosome segregatio 93.3 21 0.00045 42.6 23.7 18 420-437 483-500 (895)
148 PRK09841 cryptic autophosphory 93.0 2.6 5.7E-05 49.4 15.8 40 460-499 258-297 (726)
149 PF12325 TMF_TATA_bd: TATA ele 93.0 3.5 7.5E-05 39.4 13.8 48 466-513 13-60 (120)
150 PF09731 Mitofilin: Mitochondr 92.8 14 0.00029 42.1 20.5 29 420-448 258-287 (582)
151 PF13851 GAS: Growth-arrest sp 92.7 13 0.00027 37.9 21.2 88 432-530 32-119 (201)
152 KOG4673 Transcription factor T 92.7 29 0.00063 42.0 26.9 107 418-525 451-565 (961)
153 PF08826 DMPK_coil: DMPK coile 92.7 0.73 1.6E-05 39.6 8.0 53 480-532 5-60 (61)
154 KOG4643 Uncharacterized coiled 92.7 7.2 0.00016 48.3 18.9 86 500-590 260-345 (1195)
155 TIGR00998 8a0101 efflux pump m 92.7 4.4 9.5E-05 41.9 15.2 24 569-592 188-215 (334)
156 PF11559 ADIP: Afadin- and alp 92.7 9.5 0.0002 36.3 16.6 59 472-530 55-113 (151)
157 PF10168 Nup88: Nuclear pore c 92.7 6.6 0.00014 46.8 18.4 81 449-529 537-618 (717)
158 TIGR03794 NHPM_micro_HlyD NHPM 92.6 12 0.00025 40.9 19.0 25 560-584 227-251 (421)
159 KOG0288 WD40 repeat protein Ti 92.6 3.5 7.6E-05 46.7 15.2 99 471-576 8-106 (459)
160 PF02050 FliJ: Flagellar FliJ 92.4 6.6 0.00014 33.7 15.6 68 464-531 7-79 (123)
161 PF05546 She9_MDM33: She9 / Md 92.3 15 0.00032 38.4 18.3 72 448-526 9-82 (207)
162 COG4372 Uncharacterized protei 92.3 21 0.00046 40.7 20.5 24 738-761 354-377 (499)
163 KOG0018 Structural maintenance 92.3 36 0.00078 42.8 23.9 105 475-580 233-337 (1141)
164 PRK10929 putative mechanosensi 92.3 13 0.00029 46.4 20.9 62 510-571 172-233 (1109)
165 PF01576 Myosin_tail_1: Myosin 92.2 0.042 9.1E-07 65.3 0.0 114 472-585 570-683 (859)
166 KOG0982 Centrosomal protein Nu 92.1 11 0.00023 43.2 18.2 65 512-576 305-369 (502)
167 cd07658 F-BAR_NOSTRIN The F-BA 92.0 15 0.00032 38.0 17.9 131 437-573 58-220 (239)
168 PF05700 BCAS2: Breast carcino 92.0 8.7 0.00019 39.2 16.2 89 454-545 119-209 (221)
169 PF07111 HCR: Alpha helical co 92.0 18 0.0004 43.4 20.6 27 559-585 241-274 (739)
170 cd07672 F-BAR_PSTPIP2 The F-BA 91.9 18 0.00038 37.8 18.7 114 447-560 78-196 (240)
171 COG0419 SbcC ATPase involved i 91.9 28 0.0006 42.1 22.5 26 451-476 228-253 (908)
172 KOG0804 Cytoplasmic Zn-finger 91.8 7.4 0.00016 44.6 16.6 28 149-176 43-70 (493)
173 KOG1853 LIS1-interacting prote 91.8 22 0.00048 38.7 25.7 17 561-577 158-174 (333)
174 COG1340 Uncharacterized archae 91.7 23 0.00051 38.7 22.2 42 540-581 201-242 (294)
175 PF14197 Cep57_CLD_2: Centroso 91.7 1.6 3.4E-05 38.1 9.0 65 515-579 2-66 (69)
176 PF10473 CENP-F_leu_zip: Leuci 91.6 15 0.00032 36.2 18.2 80 472-551 20-99 (140)
177 PF02050 FliJ: Flagellar FliJ 91.5 8.3 0.00018 33.1 15.4 46 469-514 45-90 (123)
178 PF09787 Golgin_A5: Golgin sub 91.5 15 0.00032 41.8 18.9 85 673-766 364-466 (511)
179 PRK11281 hypothetical protein; 91.4 49 0.0011 41.8 28.8 35 550-584 217-251 (1113)
180 PRK15422 septal ring assembly 91.4 1.7 3.7E-05 39.4 9.1 66 523-588 9-74 (79)
181 PF05384 DegS: Sensor protein 91.2 5 0.00011 40.0 13.1 93 493-585 23-116 (159)
182 PRK10884 SH3 domain-containing 91.1 2.8 6E-05 43.0 11.6 24 552-575 145-168 (206)
183 TIGR02977 phageshock_pspA phag 91.1 19 0.00042 36.6 20.6 50 507-556 95-144 (219)
184 PF09744 Jnk-SapK_ap_N: JNK_SA 91.1 8.8 0.00019 38.2 14.6 111 448-588 3-117 (158)
185 KOG0249 LAR-interacting protei 91.0 5.8 0.00013 47.7 15.4 38 638-680 350-387 (916)
186 TIGR03017 EpsF chain length de 90.9 22 0.00049 38.5 18.8 30 409-440 199-228 (444)
187 PF13870 DUF4201: Domain of un 90.9 17 0.00036 35.6 17.1 124 428-558 7-131 (177)
188 PRK10884 SH3 domain-containing 90.8 2.7 5.8E-05 43.1 11.2 73 474-556 91-163 (206)
189 PF09738 DUF2051: Double stran 90.8 14 0.00031 40.1 17.0 70 470-546 78-147 (302)
190 PF13166 AAA_13: AAA domain 90.8 37 0.00079 39.2 23.3 42 538-579 430-471 (712)
191 PRK10929 putative mechanosensi 90.7 21 0.00044 44.9 20.3 44 541-584 189-232 (1109)
192 PRK10246 exonuclease subunit S 90.7 51 0.0011 40.8 24.8 167 419-586 536-750 (1047)
193 TIGR03017 EpsF chain length de 90.7 28 0.00061 37.8 24.3 35 467-501 169-203 (444)
194 TIGR01005 eps_transp_fam exopo 90.5 25 0.00055 41.2 20.0 12 665-676 526-537 (754)
195 PF14915 CCDC144C: CCDC144C pr 90.4 32 0.00068 37.9 22.3 150 423-576 102-269 (305)
196 KOG0249 LAR-interacting protei 90.4 5.4 0.00012 47.9 14.4 83 495-580 175-257 (916)
197 KOG0971 Microtubule-associated 90.4 57 0.0012 40.8 31.0 44 650-694 459-502 (1243)
198 KOG0239 Kinesin (KAR3 subfamil 90.4 17 0.00037 43.3 18.5 87 502-592 232-318 (670)
199 KOG4643 Uncharacterized coiled 90.3 30 0.00064 43.3 20.5 23 561-583 579-601 (1195)
200 PF06005 DUF904: Protein of un 90.2 4.3 9.3E-05 35.8 10.4 55 502-556 9-63 (72)
201 PF04380 BMFP: Membrane fusoge 90.2 1.8 3.9E-05 38.2 8.2 66 461-526 12-79 (79)
202 cd07649 F-BAR_GAS7 The F-BAR ( 90.2 19 0.0004 37.5 16.7 61 448-508 78-139 (233)
203 PF10168 Nup88: Nuclear pore c 90.1 7.5 0.00016 46.4 15.5 77 408-484 546-622 (717)
204 PRK10698 phage shock protein P 89.9 26 0.00056 36.2 19.5 121 421-558 25-146 (222)
205 PF07106 TBPIP: Tat binding pr 89.9 4 8.7E-05 39.5 11.0 64 470-533 73-138 (169)
206 KOG0963 Transcription factor/C 89.8 51 0.0011 39.4 27.6 141 446-588 123-270 (629)
207 cd07680 F-BAR_PACSIN1 The F-BA 89.8 30 0.00066 36.8 18.5 96 472-573 115-217 (258)
208 PF09728 Taxilin: Myosin-like 89.6 34 0.00073 37.1 22.2 161 418-588 20-181 (309)
209 PF09728 Taxilin: Myosin-like 89.6 23 0.0005 38.3 17.4 113 458-577 25-145 (309)
210 KOG0964 Structural maintenance 89.5 64 0.0014 40.6 22.3 168 420-588 272-502 (1200)
211 COG4477 EzrA Negative regulato 89.3 12 0.00026 43.8 15.7 111 438-548 313-426 (570)
212 KOG0804 Cytoplasmic Zn-finger 89.3 17 0.00038 41.8 16.7 73 461-535 341-413 (493)
213 PRK10476 multidrug resistance 89.2 14 0.0003 39.1 15.2 19 569-587 185-203 (346)
214 TIGR02971 heterocyst_DevB ABC 89.1 31 0.00067 35.9 17.7 22 564-585 183-204 (327)
215 TIGR03794 NHPM_micro_HlyD NHPM 88.9 19 0.00041 39.3 16.4 21 567-587 227-247 (421)
216 cd07653 F-BAR_CIP4-like The F- 88.9 28 0.00061 35.2 18.3 14 432-445 27-40 (251)
217 PF05483 SCP-1: Synaptonemal c 88.9 63 0.0014 39.2 21.3 65 520-584 589-653 (786)
218 TIGR00634 recN DNA repair prot 88.9 50 0.0011 37.9 21.0 60 521-584 304-363 (563)
219 PF10234 Cluap1: Clusterin-ass 88.7 17 0.00038 39.0 15.5 75 512-586 170-248 (267)
220 PF09304 Cortex-I_coil: Cortex 88.6 17 0.00037 34.7 13.6 88 417-507 13-101 (107)
221 PF07200 Mod_r: Modifier of ru 88.4 21 0.00045 33.8 14.4 82 448-530 34-115 (150)
222 PF11932 DUF3450: Protein of u 88.1 14 0.00031 37.9 14.1 67 502-568 40-106 (251)
223 TIGR00998 8a0101 efflux pump m 88.1 31 0.00067 35.8 16.6 15 420-434 80-94 (334)
224 PRK03598 putative efflux pump 87.9 7.2 0.00016 40.8 12.1 22 496-517 144-165 (331)
225 KOG0978 E3 ubiquitin ligase in 87.9 32 0.00069 41.5 18.3 48 437-484 485-532 (698)
226 PF12795 MscS_porin: Mechanose 87.8 35 0.00076 34.9 17.8 66 508-573 147-212 (240)
227 COG3074 Uncharacterized protei 87.8 5.4 0.00012 36.0 9.3 64 523-586 9-72 (79)
228 cd07622 BAR_SNX4 The Bin/Amphi 87.7 35 0.00075 34.8 21.3 149 416-577 10-168 (201)
229 PF10146 zf-C4H2: Zinc finger- 87.6 17 0.00038 38.0 14.4 63 513-582 34-96 (230)
230 PF14362 DUF4407: Domain of un 87.4 41 0.00088 35.3 18.7 31 544-574 223-253 (301)
231 KOG4438 Centromere-associated 87.2 63 0.0014 37.2 21.5 99 494-592 198-301 (446)
232 PF15619 Lebercilin: Ciliary p 87.2 38 0.00082 34.7 20.6 89 443-531 21-109 (194)
233 KOG2129 Uncharacterized conser 87.2 64 0.0014 37.3 20.6 65 507-584 161-225 (552)
234 cd07675 F-BAR_FNBP1L The F-BAR 87.1 25 0.00055 37.4 15.5 120 452-577 92-218 (252)
235 KOG2264 Exostosin EXT1L [Signa 86.9 3.8 8.3E-05 48.1 10.0 80 435-514 73-152 (907)
236 TIGR02473 flagell_FliJ flagell 86.8 25 0.00054 32.2 15.0 47 438-484 3-49 (141)
237 PF10473 CENP-F_leu_zip: Leuci 86.8 34 0.00073 33.8 18.0 13 567-579 126-138 (140)
238 PF05010 TACC: Transforming ac 86.8 43 0.00092 34.9 22.0 105 454-558 29-137 (207)
239 cd07656 F-BAR_srGAP The F-BAR 86.7 41 0.00088 35.2 16.5 73 448-520 77-161 (241)
240 PRK11519 tyrosine kinase; Prov 86.7 28 0.0006 41.2 17.0 13 665-677 506-518 (719)
241 PRK10869 recombination and rep 86.7 69 0.0015 37.1 21.0 39 520-558 298-336 (553)
242 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.6 29 0.00063 32.8 18.3 37 439-475 8-44 (132)
243 cd07666 BAR_SNX7 The Bin/Amphi 86.6 47 0.001 35.2 22.2 121 410-530 43-196 (243)
244 PRK10722 hypothetical protein; 86.5 1.8 3.9E-05 45.9 6.7 51 671-721 155-205 (247)
245 PF11180 DUF2968: Protein of u 86.3 26 0.00056 36.4 14.5 41 544-584 145-185 (192)
246 PF07798 DUF1640: Protein of u 86.2 37 0.0008 33.6 16.9 7 516-522 85-91 (177)
247 PF09789 DUF2353: Uncharacteri 86.1 60 0.0013 35.9 18.6 82 506-588 122-210 (319)
248 PF15294 Leu_zip: Leucine zipp 86.1 36 0.00078 37.0 16.1 150 422-585 127-278 (278)
249 PRK15178 Vi polysaccharide exp 86.0 46 0.001 38.1 17.6 142 444-585 215-369 (434)
250 PF15035 Rootletin: Ciliary ro 86.0 24 0.00053 35.7 14.0 55 496-553 126-180 (182)
251 PF05911 DUF869: Plant protein 85.9 94 0.002 38.0 31.7 268 419-716 23-310 (769)
252 PF06160 EzrA: Septation ring 85.9 75 0.0016 36.8 21.4 56 468-523 277-332 (560)
253 COG1566 EmrA Multidrug resista 85.8 14 0.00031 40.8 13.4 115 471-592 100-219 (352)
254 COG1842 PspA Phage shock prote 85.6 40 0.00087 35.3 15.8 97 495-591 36-137 (225)
255 PF13942 Lipoprotein_20: YfhG 85.5 2.8 6E-05 42.8 7.2 50 671-720 109-158 (179)
256 KOG0979 Structural maintenance 85.5 64 0.0014 40.5 19.4 147 400-555 186-355 (1072)
257 TIGR02231 conserved hypothetic 85.5 6.5 0.00014 44.2 10.9 49 540-588 125-173 (525)
258 COG2433 Uncharacterized conser 85.2 23 0.0005 42.1 15.2 37 519-562 475-511 (652)
259 TIGR02231 conserved hypothetic 85.2 11 0.00024 42.4 12.5 30 470-499 72-101 (525)
260 KOG1962 B-cell receptor-associ 85.1 10 0.00022 39.8 11.2 62 523-584 149-210 (216)
261 TIGR03752 conj_TIGR03752 integ 85.0 6.3 0.00014 45.2 10.5 67 513-579 61-128 (472)
262 KOG4360 Uncharacterized coiled 84.8 15 0.00032 43.0 13.2 139 441-579 76-238 (596)
263 PF07106 TBPIP: Tat binding pr 84.7 3.2 6.9E-05 40.2 7.1 28 564-591 113-140 (169)
264 PF06818 Fez1: Fez1; InterPro 84.5 36 0.00078 35.5 14.7 24 469-492 10-33 (202)
265 KOG0962 DNA repair protein RAD 84.0 1.4E+02 0.0031 38.5 22.1 83 416-498 846-928 (1294)
266 PF06005 DUF904: Protein of un 83.8 11 0.00025 33.2 9.3 56 460-515 9-64 (72)
267 PF09787 Golgin_A5: Golgin sub 83.7 89 0.0019 35.8 21.1 78 448-525 224-309 (511)
268 cd07657 F-BAR_Fes_Fer The F-BA 83.6 60 0.0013 33.9 18.7 49 470-518 106-154 (237)
269 COG1340 Uncharacterized archae 83.5 76 0.0016 34.9 24.1 88 497-584 165-252 (294)
270 PF14662 CCDC155: Coiled-coil 83.5 61 0.0013 33.8 22.9 32 424-455 40-71 (193)
271 cd09234 V_HD-PTP_like Protein- 83.5 71 0.0015 34.6 20.5 226 419-719 71-299 (337)
272 KOG4460 Nuclear pore complex, 83.4 38 0.00083 40.2 15.7 164 408-584 569-733 (741)
273 PF08647 BRE1: BRE1 E3 ubiquit 83.3 14 0.00031 33.5 10.1 72 417-492 21-92 (96)
274 PF08647 BRE1: BRE1 E3 ubiquit 83.2 11 0.00023 34.3 9.2 63 497-573 3-65 (96)
275 PF12325 TMF_TATA_bd: TATA ele 83.2 34 0.00074 32.8 13.0 95 420-525 16-110 (120)
276 TIGR02894 DNA_bind_RsfA transc 82.9 9.2 0.0002 38.6 9.5 70 437-517 86-155 (161)
277 cd07676 F-BAR_FBP17 The F-BAR 82.7 68 0.0015 33.8 17.5 134 437-573 63-213 (253)
278 PF12777 MT: Microtubule-bindi 82.7 6.1 0.00013 42.5 8.8 50 507-556 231-280 (344)
279 cd07624 BAR_SNX7_30 The Bin/Am 82.7 57 0.0012 32.8 21.6 40 414-453 8-51 (200)
280 PRK10698 phage shock protein P 82.6 64 0.0014 33.4 15.7 15 701-715 203-217 (222)
281 PF06008 Laminin_I: Laminin Do 82.6 64 0.0014 33.4 24.1 64 664-727 178-242 (264)
282 KOG0239 Kinesin (KAR3 subfamil 82.4 60 0.0013 38.9 17.3 18 656-677 419-436 (670)
283 KOG0244 Kinesin-like protein [ 82.3 37 0.00081 42.0 15.8 97 456-576 318-414 (913)
284 PF10146 zf-C4H2: Zinc finger- 82.3 49 0.0011 34.8 14.8 31 469-499 32-62 (230)
285 cd07652 F-BAR_Rgd1 The F-BAR ( 82.2 66 0.0014 33.3 16.0 55 437-491 61-115 (234)
286 PF03962 Mnd1: Mnd1 family; I 82.2 29 0.00063 35.1 12.8 57 444-500 30-100 (188)
287 PF10481 CENP-F_N: Cenp-F N-te 82.2 54 0.0012 36.1 15.3 26 691-716 277-302 (307)
288 PF15066 CAGE1: Cancer-associa 81.9 1.1E+02 0.0024 35.8 22.4 25 301-325 192-217 (527)
289 KOG0946 ER-Golgi vesicle-tethe 81.6 1.5E+02 0.0032 36.9 21.1 86 471-556 680-775 (970)
290 PF10498 IFT57: Intra-flagella 81.6 85 0.0018 35.0 17.1 39 492-530 268-306 (359)
291 PF08172 CASP_C: CASP C termin 81.5 9.5 0.00021 40.2 9.5 42 544-585 84-132 (248)
292 PF08606 Prp19: Prp19/Pso4-lik 81.5 8.9 0.00019 34.2 7.8 51 523-573 20-70 (70)
293 COG2433 Uncharacterized conser 81.5 20 0.00043 42.7 12.7 68 518-593 450-520 (652)
294 PF13815 Dzip-like_N: Iguana/D 81.3 11 0.00024 35.1 8.9 81 418-498 25-116 (118)
295 PRK15136 multidrug efflux syst 81.3 36 0.00078 37.2 14.1 7 586-592 220-226 (390)
296 PF13863 DUF4200: Domain of un 81.2 44 0.00095 30.6 15.0 52 466-517 18-69 (126)
297 PF03938 OmpH: Outer membrane 81.0 47 0.001 31.3 13.0 46 457-502 24-69 (158)
298 TIGR00618 sbcc exonuclease Sbc 81.0 1.5E+02 0.0033 36.6 31.2 27 497-523 386-412 (1042)
299 KOG4460 Nuclear pore complex, 80.7 1.4E+02 0.0029 35.9 18.8 128 448-578 559-687 (741)
300 PRK03598 putative efflux pump 80.6 42 0.00091 35.3 13.9 28 566-593 184-215 (331)
301 PF05262 Borrelia_P83: Borreli 80.1 1.2E+02 0.0026 35.4 18.1 18 187-204 12-29 (489)
302 PF06120 Phage_HK97_TLTM: Tail 79.8 1E+02 0.0022 33.9 18.9 120 426-545 40-168 (301)
303 TIGR02971 heterocyst_DevB ABC 79.8 66 0.0014 33.6 14.9 31 476-506 90-120 (327)
304 PF05266 DUF724: Protein of un 79.8 47 0.001 33.9 13.4 60 514-587 127-186 (190)
305 KOG1962 B-cell receptor-associ 79.5 21 0.00045 37.6 11.0 74 472-556 130-203 (216)
306 KOG4403 Cell surface glycoprot 79.3 25 0.00055 40.5 12.3 25 519-543 303-327 (575)
307 PF05483 SCP-1: Synaptonemal c 79.2 1.6E+02 0.0035 36.0 21.5 125 453-584 497-625 (786)
308 COG3096 MukB Uncharacterized p 78.9 1.8E+02 0.0039 36.3 22.4 114 455-578 980-1105(1480)
309 PF09738 DUF2051: Double stran 78.8 33 0.00072 37.4 12.7 111 421-531 106-239 (302)
310 TIGR01069 mutS2 MutS2 family p 78.8 51 0.0011 39.8 15.4 43 443-485 499-541 (771)
311 PF11180 DUF2968: Protein of u 78.3 29 0.00064 36.0 11.5 44 543-586 130-173 (192)
312 KOG0963 Transcription factor/C 78.3 1.6E+02 0.0035 35.4 23.3 120 454-573 188-337 (629)
313 cd07667 BAR_SNX30 The Bin/Amph 78.2 1E+02 0.0022 33.0 22.1 31 415-445 46-76 (240)
314 KOG4593 Mitotic checkpoint pro 78.0 1.7E+02 0.0038 35.6 23.5 113 433-545 79-199 (716)
315 PRK12704 phosphodiesterase; Pr 78.0 1.4E+02 0.0031 34.6 19.0 12 633-644 270-281 (520)
316 KOG2072 Translation initiation 77.8 1.8E+02 0.004 36.3 19.2 58 423-481 526-583 (988)
317 PF10267 Tmemb_cc2: Predicted 77.7 70 0.0015 36.3 15.1 102 459-580 216-318 (395)
318 PF07111 HCR: Alpha helical co 77.5 1.8E+02 0.0039 35.6 29.2 123 470-592 163-290 (739)
319 KOG0240 Kinesin (SMY1 subfamil 77.5 1.7E+02 0.0036 35.2 18.3 84 448-531 414-497 (607)
320 PF04871 Uso1_p115_C: Uso1 / p 77.3 73 0.0016 30.9 14.0 36 556-593 80-115 (136)
321 PF13870 DUF4201: Domain of un 77.2 76 0.0017 31.1 22.2 127 451-584 45-176 (177)
322 PF04871 Uso1_p115_C: Uso1 / p 77.0 75 0.0016 30.9 13.4 56 441-496 5-61 (136)
323 COG4026 Uncharacterized protei 76.9 20 0.00042 38.5 10.0 39 492-530 151-189 (290)
324 PRK00409 recombination and DNA 76.7 73 0.0016 38.6 15.8 16 424-439 517-532 (782)
325 TIGR00634 recN DNA repair prot 76.5 78 0.0017 36.4 15.4 50 462-511 266-315 (563)
326 PRK11519 tyrosine kinase; Prov 76.4 1.1E+02 0.0024 36.4 17.0 12 194-205 54-65 (719)
327 TIGR00618 sbcc exonuclease Sbc 76.2 2.1E+02 0.0045 35.5 22.2 11 207-217 28-38 (1042)
328 PF05615 THOC7: Tho complex su 76.1 60 0.0013 30.7 12.2 94 408-502 23-120 (139)
329 KOG2077 JNK/SAPK-associated pr 75.8 56 0.0012 39.1 14.0 75 449-530 302-376 (832)
330 PRK05689 fliJ flagellar biosyn 75.8 72 0.0016 30.1 14.1 47 438-484 6-52 (147)
331 COG3883 Uncharacterized protei 75.8 1.3E+02 0.0027 32.8 18.3 77 429-505 33-112 (265)
332 PF14992 TMCO5: TMCO5 family 75.7 40 0.00088 36.7 12.1 105 424-532 22-137 (280)
333 PF08172 CASP_C: CASP C termin 75.7 17 0.00036 38.5 9.2 33 452-484 3-35 (248)
334 KOG2129 Uncharacterized conser 75.6 1.7E+02 0.0036 34.2 17.4 62 523-584 134-196 (552)
335 PF10205 KLRAQ: Predicted coil 75.5 39 0.00085 32.1 10.6 74 505-585 6-79 (102)
336 PRK07720 fliJ flagellar biosyn 75.3 75 0.0016 30.1 15.3 101 475-582 22-128 (146)
337 PF08826 DMPK_coil: DMPK coile 75.1 23 0.00049 30.7 8.2 33 550-582 29-61 (61)
338 cd07648 F-BAR_FCHO The F-BAR ( 75.0 1.1E+02 0.0023 31.7 20.5 29 438-466 57-85 (261)
339 PRK09973 putative outer membra 75.0 9.7 0.00021 35.0 6.3 45 470-514 25-69 (85)
340 cd07647 F-BAR_PSTPIP The F-BAR 74.9 1.1E+02 0.0023 31.6 14.5 85 424-510 103-187 (239)
341 TIGR02449 conserved hypothetic 74.5 24 0.00051 31.1 8.3 58 514-585 3-60 (65)
342 TIGR02473 flagell_FliJ flagell 74.5 70 0.0015 29.3 18.2 32 478-509 70-101 (141)
343 KOG4005 Transcription factor X 74.4 24 0.00052 38.1 9.9 87 478-582 61-147 (292)
344 COG3074 Uncharacterized protei 74.2 20 0.00043 32.5 7.9 54 421-474 19-72 (79)
345 TIGR03752 conj_TIGR03752 integ 74.2 24 0.00051 40.8 10.5 24 554-577 117-140 (472)
346 PRK01156 chromosome segregatio 73.8 2.1E+02 0.0045 34.5 33.1 12 207-218 25-36 (895)
347 PF06248 Zw10: Centromere/kine 73.6 76 0.0016 36.6 14.4 48 470-520 15-62 (593)
348 KOG3647 Predicted coiled-coil 73.3 83 0.0018 34.8 13.7 67 515-581 116-182 (338)
349 KOG1850 Myosin-like coiled-coi 73.3 1.7E+02 0.0036 33.2 22.8 166 419-592 150-331 (391)
350 KOG3564 GTPase-activating prot 73.3 35 0.00076 39.9 11.5 83 496-585 27-109 (604)
351 PRK02119 hypothetical protein; 73.2 29 0.00063 30.6 8.6 24 566-589 36-59 (73)
352 TIGR02449 conserved hypothetic 73.2 26 0.00057 30.8 8.3 25 500-524 10-34 (65)
353 KOG0992 Uncharacterized conser 73.2 1.3E+02 0.0029 35.6 15.9 26 450-475 233-258 (613)
354 KOG4302 Microtubule-associated 73.1 51 0.0011 39.6 13.2 94 428-521 55-177 (660)
355 cd07664 BAR_SNX2 The Bin/Amphi 73.0 1.3E+02 0.0028 31.7 22.9 117 456-576 74-200 (234)
356 PF06785 UPF0242: Uncharacteri 72.6 1.8E+02 0.0038 33.1 18.8 100 424-523 72-174 (401)
357 TIGR02338 gimC_beta prefoldin, 72.5 80 0.0017 29.1 12.0 38 549-586 70-107 (110)
358 TIGR01069 mutS2 MutS2 family p 72.4 97 0.0021 37.6 15.4 15 15-29 124-138 (771)
359 PF14073 Cep57_CLD: Centrosome 72.3 1.3E+02 0.0027 31.2 16.7 77 493-576 81-171 (178)
360 PF05335 DUF745: Protein of un 72.1 1.2E+02 0.0027 31.1 16.1 81 470-550 61-141 (188)
361 TIGR01010 BexC_CtrB_KpsE polys 72.0 1.5E+02 0.0032 32.0 19.4 79 490-574 214-299 (362)
362 PF14931 IFT20: Intraflagellar 72.0 97 0.0021 29.9 14.6 82 473-564 31-112 (120)
363 cd07598 BAR_FAM92 The Bin/Amph 71.9 1.3E+02 0.0028 31.2 20.9 50 419-468 10-67 (211)
364 PF04100 Vps53_N: Vps53-like, 71.9 1.7E+02 0.0037 32.6 18.7 137 422-584 27-174 (383)
365 COG3883 Uncharacterized protei 71.8 1.6E+02 0.0034 32.1 22.6 72 422-493 33-104 (265)
366 cd09238 V_Alix_like_1 Protein- 71.5 83 0.0018 34.2 13.4 82 419-500 71-158 (339)
367 PRK15422 septal ring assembly 71.5 27 0.00058 32.0 8.2 59 420-478 18-76 (79)
368 COG5185 HEC1 Protein involved 71.4 2.2E+02 0.0048 33.7 18.4 51 451-501 298-355 (622)
369 KOG1103 Predicted coiled-coil 71.3 2E+02 0.0042 33.1 18.1 43 422-464 109-155 (561)
370 PF04728 LPP: Lipoprotein leuc 71.2 30 0.00065 29.8 8.0 47 463-516 4-50 (56)
371 PF03962 Mnd1: Mnd1 family; I 71.1 1.1E+02 0.0025 30.9 13.5 45 470-514 63-107 (188)
372 cd00179 SynN Syntaxin N-termin 70.9 90 0.002 29.0 13.9 16 495-510 93-108 (151)
373 cd07672 F-BAR_PSTPIP2 The F-BA 70.8 46 0.001 34.8 11.0 89 421-511 101-189 (240)
374 PLN03229 acetyl-coenzyme A car 70.7 1.4E+02 0.003 36.7 16.0 144 434-578 485-680 (762)
375 PRK00409 recombination and DNA 70.6 1.2E+02 0.0026 36.8 15.7 22 460-481 521-542 (782)
376 KOG0247 Kinesin-like protein [ 70.5 1.1E+02 0.0023 37.6 15.0 63 456-530 535-597 (809)
377 cd07655 F-BAR_PACSIN The F-BAR 70.3 1.2E+02 0.0025 31.8 13.7 104 422-528 114-217 (258)
378 PF12777 MT: Microtubule-bindi 70.2 28 0.00061 37.6 9.6 101 450-558 196-303 (344)
379 PRK15396 murein lipoprotein; P 70.1 23 0.00049 32.1 7.4 46 470-515 26-71 (78)
380 PRK07720 fliJ flagellar biosyn 69.8 1E+02 0.0022 29.2 18.8 39 477-515 72-110 (146)
381 PF04728 LPP: Lipoprotein leuc 68.8 26 0.00056 30.2 7.1 35 449-483 4-38 (56)
382 PF10805 DUF2730: Protein of u 68.7 61 0.0013 30.1 10.1 65 466-530 32-98 (106)
383 PF10267 Tmemb_cc2: Predicted 68.6 2.2E+02 0.0047 32.5 20.7 106 415-530 207-317 (395)
384 TIGR03545 conserved hypothetic 68.2 35 0.00077 39.8 10.4 15 470-484 165-179 (555)
385 PRK09841 cryptic autophosphory 67.9 2.7E+02 0.0058 33.3 19.2 13 665-677 511-523 (726)
386 PF06120 Phage_HK97_TLTM: Tail 67.9 2E+02 0.0043 31.8 16.5 66 439-506 39-104 (301)
387 PF02841 GBP_C: Guanylate-bind 67.8 1.4E+02 0.0031 31.7 13.9 13 455-467 155-167 (297)
388 KOG1003 Actin filament-coating 67.5 1.7E+02 0.0037 30.9 20.0 80 505-584 96-196 (205)
389 PRK10361 DNA recombination pro 66.1 2.7E+02 0.0058 32.6 23.0 14 660-673 346-359 (475)
390 PRK09343 prefoldin subunit bet 66.1 1.1E+02 0.0023 29.1 11.4 94 493-590 3-115 (121)
391 TIGR03185 DNA_S_dndD DNA sulfu 66.0 2.7E+02 0.0059 32.7 31.2 55 419-473 208-262 (650)
392 PF07798 DUF1640: Protein of u 65.8 1.5E+02 0.0032 29.5 18.3 41 468-508 57-98 (177)
393 PF12329 TMF_DNA_bd: TATA elem 65.8 50 0.0011 29.1 8.6 59 519-584 13-71 (74)
394 PRK15136 multidrug efflux syst 65.7 1.8E+02 0.0039 32.0 14.7 12 438-449 96-107 (390)
395 cd07674 F-BAR_FCHO1 The F-BAR 65.4 1.8E+02 0.0039 30.4 17.7 27 439-465 58-84 (261)
396 PF10475 DUF2450: Protein of u 65.4 1.9E+02 0.0041 30.6 15.6 89 496-591 52-142 (291)
397 PF03961 DUF342: Protein of un 65.3 35 0.00076 38.0 9.4 35 552-586 374-408 (451)
398 PF05103 DivIVA: DivIVA protei 65.1 4.5 9.8E-05 36.8 2.1 30 455-484 39-68 (131)
399 PF07200 Mod_r: Modifier of ru 65.0 1.3E+02 0.0028 28.6 14.2 69 508-577 38-106 (150)
400 PF14992 TMCO5: TMCO5 family 65.0 98 0.0021 33.9 12.2 157 426-588 10-181 (280)
401 PF14988 DUF4515: Domain of un 64.7 1.8E+02 0.0039 30.1 22.7 83 445-527 37-123 (206)
402 KOG3771 Amphiphysin [Intracell 64.4 36 0.00077 39.3 9.3 166 433-630 11-184 (460)
403 PF15254 CCDC14: Coiled-coil d 64.3 2.5E+02 0.0054 34.9 16.3 104 425-531 439-542 (861)
404 PF04102 SlyX: SlyX; InterPro 64.0 31 0.00068 29.7 6.9 22 566-587 31-52 (69)
405 PF05010 TACC: Transforming ac 63.9 1.9E+02 0.0042 30.2 21.0 115 452-572 87-201 (207)
406 COG4985 ABC-type phosphate tra 63.8 51 0.0011 35.7 9.7 25 559-583 220-244 (289)
407 PF08657 DASH_Spc34: DASH comp 63.7 38 0.00083 36.1 8.9 41 457-497 175-215 (259)
408 PRK14148 heat shock protein Gr 63.5 57 0.0012 33.7 9.7 99 470-592 41-139 (195)
409 cd07679 F-BAR_PACSIN2 The F-BA 63.4 2.2E+02 0.0049 30.8 20.3 97 472-574 115-218 (258)
410 PF09727 CortBP2: Cortactin-bi 63.4 2E+02 0.0042 30.1 15.2 80 464-543 79-166 (192)
411 PF09744 Jnk-SapK_ap_N: JNK_SA 63.4 1.7E+02 0.0037 29.4 17.5 74 448-528 36-113 (158)
412 KOG1899 LAR transmembrane tyro 63.3 2E+02 0.0043 35.2 15.0 26 451-476 121-146 (861)
413 PF10498 IFT57: Intra-flagella 63.1 2.6E+02 0.0056 31.4 16.4 94 425-528 218-311 (359)
414 PF13863 DUF4200: Domain of un 63.0 1.2E+02 0.0027 27.7 15.0 72 471-542 30-105 (126)
415 KOG4661 Hsp27-ERE-TATA-binding 62.8 72 0.0016 38.3 11.4 42 543-584 667-708 (940)
416 PRK14154 heat shock protein Gr 62.8 1.6E+02 0.0035 30.9 12.9 100 471-593 54-153 (208)
417 PF05700 BCAS2: Breast carcino 62.8 1E+02 0.0022 31.7 11.4 44 497-540 175-218 (221)
418 PF05103 DivIVA: DivIVA protei 62.8 8.7 0.00019 35.0 3.5 24 561-584 108-131 (131)
419 KOG4005 Transcription factor X 62.7 72 0.0016 34.6 10.5 63 416-485 86-148 (292)
420 cd08915 V_Alix_like Protein-in 62.7 2.2E+02 0.0048 30.6 15.5 145 418-572 68-219 (342)
421 cd07654 F-BAR_FCHSD The F-BAR 62.6 2.2E+02 0.0048 30.5 16.9 118 450-572 79-226 (264)
422 PF09304 Cortex-I_coil: Cortex 62.6 1.5E+02 0.0033 28.6 13.8 66 518-583 37-102 (107)
423 PF04899 MbeD_MobD: MbeD/MobD 62.4 75 0.0016 28.3 9.0 61 422-482 9-69 (70)
424 PRK02793 phi X174 lysis protei 62.4 73 0.0016 28.0 8.9 24 566-589 35-58 (72)
425 KOG1937 Uncharacterized conser 62.1 3.2E+02 0.007 32.2 19.7 158 419-584 254-427 (521)
426 PF05529 Bap31: B-cell recepto 61.6 55 0.0012 32.4 9.0 16 472-487 157-172 (192)
427 KOG4360 Uncharacterized coiled 61.6 2.2E+02 0.0048 33.9 14.8 104 469-573 159-281 (596)
428 TIGR01730 RND_mfp RND family e 61.5 67 0.0015 32.6 9.9 21 496-516 101-121 (322)
429 PF05529 Bap31: B-cell recepto 61.3 54 0.0012 32.5 8.9 33 543-575 158-190 (192)
430 COG2960 Uncharacterized protei 61.2 30 0.00066 33.0 6.7 56 473-528 33-90 (103)
431 PRK10869 recombination and rep 61.2 2.3E+02 0.0049 33.1 15.0 12 207-218 24-35 (553)
432 cd09236 V_AnPalA_UmRIM20_like 60.9 2.6E+02 0.0056 30.7 21.6 240 419-720 70-316 (353)
433 cd07627 BAR_Vps5p The Bin/Amph 60.9 2E+02 0.0042 29.3 22.1 150 419-578 17-186 (216)
434 PRK13428 F0F1 ATP synthase sub 59.9 2E+02 0.0042 32.8 14.0 15 749-763 387-401 (445)
435 PRK14140 heat shock protein Gr 59.9 53 0.0012 33.8 8.8 50 470-519 38-87 (191)
436 PRK09793 methyl-accepting prot 59.8 3E+02 0.0066 31.2 16.9 69 418-486 241-313 (533)
437 KOG0993 Rab5 GTPase effector R 59.6 2.2E+02 0.0048 33.2 14.1 91 460-550 22-132 (542)
438 PF08581 Tup_N: Tup N-terminal 59.3 1.2E+02 0.0027 27.4 10.0 62 492-556 6-74 (79)
439 PF05262 Borrelia_P83: Borreli 59.2 3.6E+02 0.0077 31.7 16.5 13 636-648 395-407 (489)
440 KOG3647 Predicted coiled-coil 59.1 2.9E+02 0.0064 30.7 14.5 69 493-561 108-176 (338)
441 COG3096 MukB Uncharacterized p 58.8 4.7E+02 0.01 33.0 24.3 27 463-489 384-410 (1480)
442 PF09731 Mitofilin: Mitochondr 58.8 3.3E+02 0.0072 31.3 20.6 35 686-720 538-573 (582)
443 PF06008 Laminin_I: Laminin Do 58.8 2.3E+02 0.005 29.5 19.6 23 689-711 224-246 (264)
444 KOG4637 Adaptor for phosphoino 58.7 2.9E+02 0.0064 31.9 14.7 126 366-528 44-186 (464)
445 cd07686 F-BAR_Fer The F-BAR (F 58.5 2.5E+02 0.0055 29.8 18.7 122 450-573 74-208 (234)
446 COG4487 Uncharacterized protei 58.4 3.2E+02 0.0069 31.9 15.2 93 464-565 52-148 (438)
447 PRK14155 heat shock protein Gr 58.2 1.3E+02 0.0029 31.3 11.4 100 472-592 16-115 (208)
448 PRK14141 heat shock protein Gr 57.9 1.4E+02 0.003 31.4 11.4 101 473-592 35-136 (209)
449 PF10212 TTKRSYEDQ: Predicted 57.7 2.3E+02 0.005 33.6 14.2 68 245-336 225-292 (518)
450 KOG0018 Structural maintenance 57.6 5.3E+02 0.012 33.3 25.4 46 536-581 853-898 (1141)
451 PF06785 UPF0242: Uncharacteri 57.3 3.4E+02 0.0075 31.0 15.3 60 469-528 99-158 (401)
452 PRK04406 hypothetical protein; 57.0 1.1E+02 0.0024 27.2 9.2 24 566-589 38-61 (75)
453 PF02403 Seryl_tRNA_N: Seryl-t 56.7 99 0.0021 27.8 9.1 16 510-525 73-88 (108)
454 KOG1937 Uncharacterized conser 56.6 4E+02 0.0086 31.5 18.2 37 478-514 295-331 (521)
455 KOG4403 Cell surface glycoprot 56.2 2.1E+02 0.0045 33.6 13.3 27 439-465 264-290 (575)
456 PF08580 KAR9: Yeast cortical 56.1 4.5E+02 0.0097 32.0 20.8 48 656-703 220-267 (683)
457 COG1566 EmrA Multidrug resista 56.0 2.1E+02 0.0046 32.0 13.1 52 537-588 149-204 (352)
458 PRK10780 periplasmic chaperone 56.0 2.1E+02 0.0045 28.0 12.8 43 458-500 32-74 (165)
459 PF05276 SH3BP5: SH3 domain-bi 55.4 2.9E+02 0.0063 29.5 17.5 76 447-528 69-145 (239)
460 PRK14143 heat shock protein Gr 55.3 63 0.0014 34.3 8.7 49 471-519 69-117 (238)
461 PF05837 CENP-H: Centromere pr 55.2 1.2E+02 0.0025 28.3 9.4 63 493-556 13-75 (106)
462 PF14389 Lzipper-MIP1: Leucine 55.1 49 0.0011 30.0 6.8 61 470-530 9-73 (88)
463 smart00503 SynN Syntaxin N-ter 55.0 1.5E+02 0.0033 26.2 11.6 97 419-515 14-114 (117)
464 KOG0288 WD40 repeat protein Ti 55.0 4E+02 0.0088 31.1 16.4 18 524-541 82-99 (459)
465 PF05278 PEARLI-4: Arabidopsis 54.9 3.2E+02 0.007 30.0 15.1 49 482-530 199-247 (269)
466 PF12808 Mto2_bdg: Micro-tubul 54.8 29 0.00062 29.5 4.9 47 666-712 3-49 (52)
467 COG3599 DivIVA Cell division i 54.7 2.8E+02 0.0061 29.2 14.1 58 499-556 83-140 (212)
468 PF05278 PEARLI-4: Arabidopsis 54.4 3.3E+02 0.0071 29.9 15.2 58 474-531 198-255 (269)
469 PRK13729 conjugal transfer pil 54.1 76 0.0016 37.0 9.6 33 552-584 89-121 (475)
470 PRK00295 hypothetical protein; 54.0 1.2E+02 0.0026 26.4 8.7 23 566-588 32-54 (68)
471 PF05384 DegS: Sensor protein 53.9 2.5E+02 0.0054 28.4 20.0 110 447-556 19-129 (159)
472 KOG1144 Translation initiation 53.4 1.1E+02 0.0024 37.9 11.1 80 507-593 227-308 (1064)
473 PF09602 PhaP_Bmeg: Polyhydrox 53.2 2.7E+02 0.0059 28.6 19.4 136 421-584 23-160 (165)
474 PRK11578 macrolide transporter 53.1 1E+02 0.0022 33.1 10.0 7 586-592 188-194 (370)
475 PF05266 DUF724: Protein of un 53.1 2.7E+02 0.0059 28.6 13.4 60 421-484 87-146 (190)
476 PF10046 BLOC1_2: Biogenesis o 53.0 1.8E+02 0.004 26.6 12.4 45 440-484 13-57 (99)
477 PF02183 HALZ: Homeobox associ 52.9 43 0.00094 27.3 5.5 39 538-583 4-42 (45)
478 PRK05689 fliJ flagellar biosyn 52.8 2.1E+02 0.0045 27.1 18.3 94 424-517 6-112 (147)
479 COG4487 Uncharacterized protei 52.8 4.4E+02 0.0094 30.8 20.9 140 424-573 27-181 (438)
480 PF02994 Transposase_22: L1 tr 52.7 33 0.00072 37.8 6.5 13 423-435 43-55 (370)
481 PRK00736 hypothetical protein; 52.1 1.5E+02 0.0031 25.9 9.0 24 566-589 32-55 (68)
482 KOG0240 Kinesin (SMY1 subfamil 52.1 5.1E+02 0.011 31.4 17.6 183 375-585 307-495 (607)
483 KOG1574 Predicted cell growth/ 51.7 1.3E+02 0.0029 34.1 10.8 119 410-535 196-319 (375)
484 PRK14160 heat shock protein Gr 51.6 90 0.002 32.7 9.0 47 471-517 63-109 (211)
485 PHA02816 hypothetical protein; 51.4 10 0.00022 35.0 2.0 29 14-42 37-65 (106)
486 PF05929 Phage_GPO: Phage caps 51.4 61 0.0013 35.2 8.0 62 418-479 190-252 (276)
487 PRK14900 valS valyl-tRNA synth 51.4 76 0.0016 39.7 9.8 64 469-532 842-905 (1052)
488 PRK11448 hsdR type I restricti 51.3 96 0.0021 39.2 10.7 66 471-536 144-209 (1123)
489 cd07681 F-BAR_PACSIN3 The F-BA 51.2 3.5E+02 0.0075 29.2 18.9 130 438-573 61-217 (258)
490 PF10212 TTKRSYEDQ: Predicted 51.0 4.5E+02 0.0098 31.3 15.1 27 433-459 301-327 (518)
491 TIGR02894 DNA_bind_RsfA transc 51.0 88 0.0019 31.9 8.5 50 507-556 93-142 (161)
492 PF12808 Mto2_bdg: Micro-tubul 51.0 30 0.00066 29.3 4.5 39 494-532 12-50 (52)
493 PF12329 TMF_DNA_bd: TATA elem 50.8 1.8E+02 0.0038 25.7 9.4 62 440-501 4-65 (74)
494 cd07665 BAR_SNX1 The Bin/Amphi 50.7 3.3E+02 0.0072 28.9 22.5 156 417-576 19-200 (234)
495 PF13747 DUF4164: Domain of un 50.6 72 0.0016 29.1 7.2 42 673-714 41-82 (89)
496 COG4717 Uncharacterized conser 50.4 6.4E+02 0.014 32.1 20.0 160 421-584 621-798 (984)
497 PRK14147 heat shock protein Gr 50.3 2.2E+02 0.0047 28.9 11.1 99 466-583 15-113 (172)
498 TIGR02977 phageshock_pspA phag 50.1 3E+02 0.0065 28.2 21.3 160 424-583 32-217 (219)
499 KOG2264 Exostosin EXT1L [Signa 50.1 88 0.0019 37.6 9.4 70 491-560 80-149 (907)
500 TIGR03545 conserved hypothetic 50.0 1.8E+02 0.004 34.2 12.1 112 466-588 161-272 (555)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.47 E-value=0.00028 Score=81.21 Aligned_cols=165 Identities=18% Similarity=0.318 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
.+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 756 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444455444444444444444455555555555555444444444444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
..+..++....++...+..++..|+.++..++...-.++.++..+..++..++.++..+..+...++..+..|+.+.+.+
T Consensus 757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 836 (1179)
T TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333322223334444444444444444444444444444444444444444
Q ss_pred HHHHH
Q 004063 580 QSKLR 584 (776)
Q Consensus 580 qSKLR 584 (776)
+.++.
T Consensus 837 ~~~~~ 841 (1179)
T TIGR02168 837 ERRLE 841 (1179)
T ss_pred HHHHH
Confidence 44433
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.38 E-value=0.00017 Score=82.85 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
.+...|++.++++..+.-.+...++..+.-.+.+-.+-..+...++.....+..++.++++++.++......++.+..+.
T Consensus 684 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~ 763 (1179)
T TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544444444444444555555555555555555555544444444444444444
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 004063 500 ANVRLECNAADERAKILASE 519 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaE 519 (776)
+....+...+.+....+..+
T Consensus 764 ~~~~~~l~~~~~~~~~l~~~ 783 (1179)
T TIGR02168 764 EELEERLEEAEEELAEAEAE 783 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.36 E-value=0.0003 Score=81.58 Aligned_cols=168 Identities=22% Similarity=0.296 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 498 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 498 (776)
..++..|+.-|+.|..+--.+...+.....-.+.|..+-..+.....+-...+..++.+++.+..++..-...+..+..+
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~ 752 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888777777777777777777777777777777777766666655555666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----h-hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 499 YANVRLECNAADERAKILASEVIGLEEKALRLRSN----E-LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~----e-LKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
...+..++.....+...+..++..|+.++..+... . -+.+.++..+..++..+..++..+..+...+...++.|+
T Consensus 753 ~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 832 (1164)
T TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666665555544321 1 113445666777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhh
Q 004063 574 EEKKMMQSKLRKA 586 (776)
Q Consensus 574 EEKklLqSKLR~a 586 (776)
.+...++.++...
T Consensus 833 ~e~~~l~~~~~~l 845 (1164)
T TIGR02169 833 KEIQELQEQRIDL 845 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666644
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=98.31 E-value=0.00062 Score=78.55 Aligned_cols=12 Identities=25% Similarity=0.069 Sum_probs=6.2
Q ss_pred CCccccCCCCcc
Q 004063 207 SNAIALGNGHSF 218 (776)
Q Consensus 207 sn~~~~~~g~s~ 218 (776)
-|.|.-.||+|=
T Consensus 25 ~~~i~G~Ng~GK 36 (880)
T PRK02224 25 VTVIHGVNGSGK 36 (880)
T ss_pred eEEEECCCCCCH
Confidence 355555555554
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.31 E-value=0.0021 Score=74.81 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 466 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq 466 (776)
.++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus 237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666667777777777777777666666666666666666666
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.10 E-value=0.0046 Score=74.75 Aligned_cols=70 Identities=26% Similarity=0.353 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 491 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~ 491 (776)
-..|+..+..+..+.-.|...+...++-...+..+..++.+..+.....+.++...+.+++.++.....+
T Consensus 732 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1163)
T COG1196 732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEE 801 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555544444444444444444444444444444444444444443333333333333333
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.07 E-value=0.0013 Score=82.99 Aligned_cols=237 Identities=23% Similarity=0.309 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 004063 444 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL-------VELESFRNEYANVRLECNAADERAKIL 516 (776)
Q Consensus 444 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~-------~~le~l~aErDaAq~E~n~A~ERaK~L 516 (776)
+.+.++-+.|..+...+-..+..-...+.++++....|+.+..... ..++.+-..+..+++|.+.+..+.+.|
T Consensus 890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l 969 (1930)
T KOG0161|consen 890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL 969 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666655555555554444333333322 233333444556777777777777777
Q ss_pred HHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHH-------HHHHHHHHHHHh
Q 004063 517 ASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK 585 (776)
Q Consensus 517 AaEVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQ-------EEKklLqSKLR~ 585 (776)
.-|+..+++.+-.| .|..|++|. +...+..-+.++..+.+-+..+...|+-|+ .-.+.++.+.|+
T Consensus 970 ~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen 970 EEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766644 333344433 333444444555555555555444444443 222344444454
Q ss_pred hccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHH
Q 004063 586 ASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRM 665 (776)
Q Consensus 586 asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~ 665 (776)
..+.-+.. ..+-+++.....-. ...+. ..+.++ +.- -.-.+|.-++
T Consensus 1046 le~el~~~------------~e~~~~~~~~~~el---~~~l~----kke~El--------------~~l-~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1046 LEGELKDL------------QESIEELKKQKEEL---DNQLK----KKESEL--------------SQL-QSKLEDEQAE 1091 (1930)
T ss_pred HHHHHHHh------------hhHHHHHHHHHHHH---HHHHH----HHHHHH--------------HHH-HHHhhHHHHH
Confidence 44332221 11111110000000 00000 001111 000 1234566688
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHH
Q 004063 666 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL 718 (776)
Q Consensus 666 IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELl 718 (776)
+..+--.|.+|.....+|-..|..+.....++.+.+.||.++|++++.+||.+
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999988
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.00 E-value=0.0073 Score=73.13 Aligned_cols=242 Identities=22% Similarity=0.327 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-------SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 493 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-------aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 493 (776)
+...|+.+|+++..+...+...+.....-...+-..-+ .+..++..-...+..++.+.++++..+...-..++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777776666666555555444444444433 33444444444444444444555555444444444
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 004063 494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 566 (776)
Q Consensus 494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR-------S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~ 566 (776)
.+..+.+..+.+.++..+....+......|++++..+. ...-..+.++..++.++..+..++......+..+.
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444333 22233333444444444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCcc
Q 004063 567 STIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 646 (776)
Q Consensus 567 stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~ 646 (776)
..|+.++++...++.++......-... ...+ +....+
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~---------------~~~~-------~~~~~~--------------------- 864 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEEL---------------EKEL-------EELKEE--------------------- 864 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---------------HHHH-------HHHHHH---------------------
Confidence 566666666665555555322211100 0000 000000
Q ss_pred cccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHH
Q 004063 647 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 717 (776)
Q Consensus 647 g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL 717 (776)
-......+.+++.-|..++.+++.+-..|+.......+++.....+..++..+..+++.
T Consensus 865 ------------l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 923 (1163)
T COG1196 865 ------------LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923 (1163)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112456677777777777777777777777777777777777777776655444433
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=97.92 E-value=0.018 Score=66.83 Aligned_cols=165 Identities=18% Similarity=0.268 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY-------NQQRSVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~y-------NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
.++..|++.|.++..+.-.+...+.......+.|-.+.+.|.... ........+|..+.+.|+.++......+
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l 337 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA 337 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555544444443322 2233334455555555666555555555
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 572 (776)
..+..+....+....+..++.+.+..++..|+.++..++..-=.++++++.+..+++.++.++..+..+..++...|+.|
T Consensus 338 ~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l 417 (880)
T PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL 417 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHH
Confidence 55544444444455555555555555555555555444444444455555555555555555554454555555555666
Q ss_pred HHHHHHHHHHHH
Q 004063 573 QEEKKMMQSKLR 584 (776)
Q Consensus 573 QEEKklLqSKLR 584 (776)
|+++..|+.++-
T Consensus 418 ~~~~~~l~~~~~ 429 (880)
T PRK02224 418 REERDELREREA 429 (880)
T ss_pred HHHHHHHHHHHH
Confidence 655555554443
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.87 E-value=0.035 Score=63.54 Aligned_cols=153 Identities=24% Similarity=0.279 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 504 (776)
Q Consensus 425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 504 (776)
||..|+++-+||-.|+.....-.+-+++|-.+++.|- ..+...+.++++|+++.+.-....+.+..|++....
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~-------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE-------AELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999988777666555555555555554 455555566666666666666677888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhhhHHHhhh--hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLEN--SQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLR-----S~eLKleKElE~--l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 577 (776)
+..++..|.+.|..++..|..+....- -..++.+++-.+ ++.++..+..++.....++...+..+++|.++++
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr 293 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR 293 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999998888874321 122222222111 2333444444444444445566666677777777
Q ss_pred HHHHHHH
Q 004063 578 MMQSKLR 584 (776)
Q Consensus 578 lLqSKLR 584 (776)
.++.+|.
T Consensus 294 ~~qe~lq 300 (546)
T PF07888_consen 294 SAQEQLQ 300 (546)
T ss_pred HHHHHHH
Confidence 7777665
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.87 E-value=0.0017 Score=82.04 Aligned_cols=159 Identities=22% Similarity=0.291 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 004063 426 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE 491 (776)
Q Consensus 426 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L--------------q~Ei~aQ~~~ 491 (776)
.|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+.-+..++++. ..-+.--.-.
T Consensus 1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999998555555555555443 3333333444
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
.+.+..|+|+++.+.......++.|..++..+-+.+-+++...=+++.+++.+..-+....+.+..+++++-.+..+++.
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~e 1530 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEE 1530 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668889999999999999999999999888888877776666666666666655555555555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004063 572 LQEEKKMMQSKLR 584 (776)
Q Consensus 572 LQEEKklLqSKLR 584 (776)
||..+..|+..|+
T Consensus 1531 lQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1531 LQAALEELEAALE 1543 (1930)
T ss_pred HHHHHHHHHHHhh
Confidence 5544444444433
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=0.0053 Score=75.03 Aligned_cols=163 Identities=14% Similarity=0.235 Sum_probs=97.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL---TDSY---NQQRSVVNQLKSEMEKLQEEIKVQLV-- 490 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaL---t~~y---NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-- 490 (776)
..++..|++.|.+++.+.-.+...|+......+.+..+-..+ .... .+....+..|+.++++|..++..+..
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~ 822 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 356777888888888887777777777777777776666433 2222 44455566777777776665554332
Q ss_pred -------HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH----------hhhhHHHHHHHHH
Q 004063 491 -------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ----------LENSQSEISSYKK 553 (776)
Q Consensus 491 -------~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKE----------lE~l~~Er~S~~~ 553 (776)
.+..+..+++.++.+.+...+....+..++..|+.++..++...+++.+. ++.+..++..+..
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344455555555555557777777777777877777777776665543 3334444444444
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 554 KISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 554 q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
++.-+..+-..+...++.++.++..+..
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELIS 930 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.75 E-value=0.14 Score=60.06 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=119.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
....+....||+-|+- |...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+ ..+
T Consensus 414 ~~~~~a~~rLE~dvkk-------LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl-------~~L 479 (697)
T PF09726_consen 414 NSEPDAISRLEADVKK-------LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL-------QNL 479 (697)
T ss_pred ccChHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3445666677766654 66777777777777766655565544456667777777777777643 233
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhh----HHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS----QSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l----~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
..-+..=++.+....-|.+..+.-...||.++...|....+.+-...+. ...|. ---+.....|.+|..+|.+
T Consensus 480 ~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~ 556 (697)
T PF09726_consen 480 VQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ---ECAESCRQRRRQLESELKK 556 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc---hhHHHHHHHHHHHHHHHHH
Confidence 2223332233333333333333334444444443333322211111110 00000 0111233445667777777
Q ss_pred HHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCccccccc
Q 004063 572 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL 651 (776)
Q Consensus 572 LQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af 651 (776)
|+-|+|..+..++.+.........-. ++ +-.|.+++--+.-
T Consensus 557 lr~elk~kee~~~~~e~~~~~lr~~~-----~e---~~~~~e~L~~aL~------------------------------- 597 (697)
T PF09726_consen 557 LRRELKQKEEQIRELESELQELRKYE-----KE---SEKDTEVLMSALS------------------------------- 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hh---hhhhHHHHHHHHH-------------------------------
Confidence 77777777776665444221100000 00 0011111111110
Q ss_pred ccccccchhhHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063 652 EGLAVNIPHDQMRMIHNINALISELALE---KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720 (776)
Q Consensus 652 ~~~~~~Ip~DQlR~IdsInaLisELa~E---ReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 720 (776)
.|-|-=..|=..|..| |=.|.+||-++.|++..+..+-..=.+++++++++|.-+.|
T Consensus 598 ------------amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 598 ------------AMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred ------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222333333 45688899999999888888888888888889998865544
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.72 E-value=0.004 Score=70.84 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=50.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 004063 664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNM 723 (776)
Q Consensus 664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m 723 (776)
+.-|.=+-.|+|..+|..++-++|+-.-..=-+|.+.|.||.+-.+.+.+||+-.+.-.-
T Consensus 403 ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 403 KEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 444444457899999999999999999998899999999999999999999998865443
No 15
>PRK11637 AmiB activator; Provisional
Probab=97.59 E-value=0.031 Score=60.74 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=52.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
...++...|++-|+++-++.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777776666666666666666666666777777776666666666666666665555444433
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=97.52 E-value=0.25 Score=57.37 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
.+.|++.|+.+..++-.+...++..+. --+.|..+...+-.+|+.....+.+++.+++.|+++
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~ 274 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444433322 222333333344445555444455555554444444
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.43 E-value=0.11 Score=57.17 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=15.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 462 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 462 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
++|.+-...+..|+.+++.++.++......++.+
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~ 207 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ 207 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333444444445555555554444333333333
No 18
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.35 E-value=0.22 Score=56.33 Aligned_cols=217 Identities=23% Similarity=0.263 Sum_probs=137.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-------h
Q 004063 463 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L 535 (776)
Q Consensus 463 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e-------L 535 (776)
........+.+.+..|+....|+..=...+++|+.|....+.+.+...++......+|..|+.++.++|+.- -
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 356667777788888888888888888999999999999999999999999999999999999999988763 1
Q ss_pred -------hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccc
Q 004063 536 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS 608 (776)
Q Consensus 536 -------KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTS 608 (776)
.+...|+.+..|.+.+++.......|...+..+++...-..+-++.||+-+--.-.++ +.....+
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa--------KasEa~A 433 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA--------KASEALA 433 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 1334455556666666666666666666666666666666666666666322111111 1111123
Q ss_pred cccccccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004063 609 TEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALS 688 (776)
Q Consensus 609 TdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa 688 (776)
..+| ++...+ .+.......+ .+..+.|+ ++--..|......=.+-+-...+
T Consensus 434 la~i----k~l~e~---------~~~~~~~~~~----------~~~~Vtls------~eEy~~L~~ka~e~ee~a~kkva 484 (522)
T PF05701_consen 434 LAEI----KALSES---------ESSSRASDSE----------SSSKVTLS------LEEYESLSKKAEEAEELAEKKVA 484 (522)
T ss_pred HHHH----HHhhcc---------cccccccccC----------CCCCeeec------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 111000 0000111101 11114455 33344555555555555555677
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063 689 SELAQSSKLKDLNNELSRKLEHQTQRLE 716 (776)
Q Consensus 689 ~esr~~~dLk~lN~ELsRKLE~qtQRLE 716 (776)
.+..++..++.-.++.-.|||.....+|
T Consensus 485 ~A~aqve~ak~se~e~l~kle~~~~e~~ 512 (522)
T PF05701_consen 485 AAMAQVEAAKASEKEILEKLEEAMKEIE 512 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888999889888877655
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.32 E-value=0.022 Score=60.25 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=22.5
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhh----hHHHHHHHHHHHHHHHHHHH
Q 004063 538 ERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 538 eKElE~l~~Er~S~~~q~ssi~kER~----~l~stIdaLQEEKklLqSKL 583 (776)
..+++.+..++..+..++..+++.+. -=..+|.+|+.+.+.||...
T Consensus 243 ~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 243 EEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433332 22356667777777666543
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.30 E-value=0.042 Score=66.61 Aligned_cols=140 Identities=18% Similarity=0.288 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHhhhHHHHHHHHH
Q 004063 444 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-------RNEYANVRLECNAADERAKIL 516 (776)
Q Consensus 444 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-------~aErDaAq~E~n~A~ERaK~L 516 (776)
...++-.+..-..++++..+++.--.++++++++.+.--.||+.-...+..+ +.++..++....+...+...|
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l 377 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL 377 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666776666666666666665555555554444444444 444444444445555555555
Q ss_pred HHHHHHHHHHH-HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 517 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 517 AaEVV~LEek~-lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
-.++..++++. ..+-+...+.+.+++.|..|+..++-++.+|..|++.|+..+...|||+-..+.++
T Consensus 378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555555 44455556777888888888888888888888888888888888888875554433
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.25 E-value=0.07 Score=58.58 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 510 DERAKILASEVIGLEEKAL---RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 510 ~ERaK~LAaEVV~LEek~l---qLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+++.+.|..+...|++.+. +.+..--++.+.+++++.++...+..+..+..++..++..|+.|+++...+..+|+
T Consensus 305 ~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 305 KDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 3344445555555555544 22222333455555666666666666666666666666666666644333333333
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.24 E-value=0.036 Score=68.04 Aligned_cols=125 Identities=10% Similarity=0.117 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 004063 458 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL 537 (776)
Q Consensus 458 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl 537 (776)
..|...-++++..+..++.+++-|+.++..-...++.++.+.+....+........+....++..|..+|... .....
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y--~~~~~ 968 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK--IQDGK 968 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCC
Confidence 3344444444444444444444444444444444444443333333333333333333333333344444332 11222
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 538 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
.++++.+..++..+...+..++.+...+...|+++..+...++..-|
T Consensus 969 ~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606 969 DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433333
No 23
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.23 E-value=0.091 Score=54.91 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH--------HHhhhhHHHHHHHHHHHHHHHHHHHHh----h
Q 004063 519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLRK----A 586 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi--------~kER~~l~stIdaLQEEKklLqSKLR~----a 586 (776)
++...+.++.+++.....++.++..++.++..++.++..+ ..++.++...+..++.+...++.+|.+ +
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~A 276 (423)
T TIGR01843 197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRS 276 (423)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEEC
Confidence 3444444444444444444444444444444444444332 233444555555555555555555553 3
Q ss_pred ccCCCc
Q 004063 587 SGSGKS 592 (776)
Q Consensus 587 sa~gKa 592 (776)
+-.|.+
T Consensus 277 P~dG~V 282 (423)
T TIGR01843 277 PVDGTV 282 (423)
T ss_pred CCCcEE
Confidence 445554
No 24
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.66 Score=55.30 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
..+..++..+.+++..+...++.+.++.+.++..+.
T Consensus 406 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~ 441 (908)
T COG0419 406 EEIQEELEELEKELEELERELEELEEEIKKLEEQIN 441 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555554444
No 25
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.12 E-value=0.14 Score=53.47 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=37.5
Q ss_pred HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH--------HHHHHHHHHHHHHHHHHHhh
Q 004063 524 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ--------STIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 524 Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~--------stIdaLQEEKklLqSKLR~a 586 (776)
+.+....+..-..++.++..++.++..++.++..+..+...+. ..+..++.+++.++.++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666677777777777777777666655544322 23345556666666666643
No 26
>PRK11637 AmiB activator; Provisional
Probab=97.11 E-value=0.23 Score=54.07 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
.++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666655555555555555555666666666666666666666655554443
No 27
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.11 E-value=0.12 Score=63.46 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063 665 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720 (776)
Q Consensus 665 ~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 720 (776)
+.+-...|..+++.-+.++-.....-.....+++...+++.++++.+.+.++.+..
T Consensus 814 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 869 (1201)
T PF12128_consen 814 LREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEE 869 (1201)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555554444444444444444555666666666666666665555444
No 28
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.10 E-value=1.4 Score=55.12 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=57.5
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 004063 408 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ 482 (776)
Q Consensus 408 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq-----Q~~~v~qLk~~mE~Lq 482 (776)
+-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+... -+.||+ ....+-..+.+++.++
T Consensus 208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~ 282 (1353)
T TIGR02680 208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS 282 (1353)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999998887776665544333333 333322 344444 2223333344444444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063 483 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 523 (776)
Q Consensus 483 ~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L 523 (776)
.++......++....+.+.++.++.....+...+..|...|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444334444444444444444444444444444443333
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.07 E-value=0.085 Score=63.33 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHh
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC-NAADERAKILASEVIGLEEKALRLR-------SNELKLERQL 541 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~-n~A~ERaK~LAaEVV~LEek~lqLR-------S~eLKleKEl 541 (776)
.+.-|+-++|.|++-+..-...||-+++|..+-=-.. +...-+-|.|...-+.|-+-+-||| -...|+.|++
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3445566666666666666666777777766532222 1223344444444455555554444 4567888888
Q ss_pred hhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 542 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 542 E~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
|..+.|+.-+++.-+.+..+=+.+.++|.-|||..
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888765
No 30
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.07 E-value=0.29 Score=56.87 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004063 664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN 702 (776)
Q Consensus 664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ 702 (776)
+|...+++.+..++.||++|...|......|-.|-.+-+
T Consensus 346 ~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va 384 (617)
T PF15070_consen 346 AMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVA 384 (617)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 678899999999999999999999888777766644433
No 31
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.02 E-value=0.23 Score=59.59 Aligned_cols=158 Identities=22% Similarity=0.247 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 503 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 503 (776)
..+|..-+....|+.|-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-+++ .+.+-+.|+
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a----~r~q~eka~ 409 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA----SRTQLEKAQ 409 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4567777888899999999999999999999999999999999999998888888888887443322 222222222
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----------------------------HHHhhhhHHHHHHHHHHH
Q 004063 504 LECNAADERAKILASEVIGLEEKALRLRSNELKL----------------------------ERQLENSQSEISSYKKKI 555 (776)
Q Consensus 504 ~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl----------------------------eKElE~l~~Er~S~~~q~ 555 (776)
--..++.-.+.........|-++..+||....-+ ...++++..+.....+++
T Consensus 410 ~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 410 VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222333333444455555555555543322 233455555666666677
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 556 SSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 556 ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
+.+.+-=.++.-++..|++|.+.||.++-+
T Consensus 490 e~~~~~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 490 ESQAKALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 766666666777777777777777777654
No 32
>PRK09039 hypothetical protein; Validated
Probab=96.99 E-value=0.091 Score=56.58 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 506 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
...+..|+..|+.+...+.....+.+.+-.++..|++.|+..+.++..++.+++..-.+.+..|+.|+.++..+
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666655555555555555444333
No 33
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.94 E-value=0.082 Score=56.61 Aligned_cols=77 Identities=29% Similarity=0.304 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHHHHHHHHHHHHHHH
Q 004063 506 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~stIdaLQEEKklLqS 581 (776)
+..+.+..+.+-.|+...-.++.+++.+.-++...++....++..+..++..+++. |+-=.++|.+|+.+...||.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333344444444444444444444444442 33334566677776666665
Q ss_pred H
Q 004063 582 K 582 (776)
Q Consensus 582 K 582 (776)
.
T Consensus 286 l 286 (312)
T smart00787 286 L 286 (312)
T ss_pred H
Confidence 3
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=96.93 E-value=0.26 Score=57.23 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 503 RLECNAADERAKILASEVIGLEEKALRLRSNELKL------ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 503 q~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl------eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
...+..-.++.+.+..|+..|++++.+++...-+. .+.++.+......+...+..+.+++..+...++.|++++
T Consensus 251 ~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 330 (880)
T PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555443222111 111222333333444555555555555555555554444
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.92 E-value=0.04 Score=57.46 Aligned_cols=118 Identities=25% Similarity=0.332 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------HhhhhHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS---------NELKLER 539 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS---------~eLKleK 539 (776)
..+..|--++.+|...+.-+.-+|+.+++|..++.-.+.+.......|.-+|..+|.++..+|. .-+|.++
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~ 89 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 3444555555555555555555555555555555555555555555555555555555544443 4466677
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
++..|..|+....++...++.|=.+|...++.|+++...++.++.++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999988888888753
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.32 Score=58.04 Aligned_cols=140 Identities=24% Similarity=0.279 Sum_probs=76.5
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccc
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD 628 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~ 628 (776)
-..+.++..+.+-|+-++++|+-||-+.|.+|.||.++.-. |.. . ++-| .+..+.+.+
T Consensus 468 tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~E-kq~-l-------------~~ql----kq~q~a~~~--- 525 (1118)
T KOG1029|consen 468 TTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPE-KQE-L-------------NHQL----KQKQSAHKE--- 525 (1118)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHH-H-------------HHHH----HHhhhhccC---
Confidence 34456667777888888999999999999999999865432 111 0 0000 111000000
Q ss_pred ccCCcccCCCCCCCCCccc-ccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh------
Q 004063 629 DASLPRIDASGSTLLPESG-RLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN------ 701 (776)
Q Consensus 629 ~as~qe~~vs~~p~~P~~g-~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN------ 701 (776)
.++ ...|..- . ..--.+|.-|.+-++||+.|.+.-++.+-+--.++.+||+.-
T Consensus 526 ----------------~~~~~s~L~aa---~-~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~la 585 (1118)
T KOG1029|consen 526 ----------------TTQRKSELEAA---R-RKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLA 585 (1118)
T ss_pred ----------------cchHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 000 0001000 0 001145677888888888888877777666666666555421
Q ss_pred ------HHHHHHHHHHHhHHHHHHHHHhhhhcccc
Q 004063 702 ------NELSRKLEHQTQRLELLTAQNMANENISF 730 (776)
Q Consensus 702 ------~ELsRKLE~qtQRLELltsq~m~~e~~~a 730 (776)
++-...-|.+|.+|||.--+.......++
T Consensus 586 ke~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa 620 (1118)
T KOG1029|consen 586 KEELYKNERDKLKEAETKALELIGEKEAESAPASA 620 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhc
Confidence 22233345667888887666654444333
No 37
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.89 E-value=0.69 Score=58.58 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCc
Q 004063 543 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKS 592 (776)
Q Consensus 543 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa 592 (776)
+|...+..|..++..++.++.++...++.++.+++-+..++.. ....|++
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv 489 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEV 489 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3455555555566555555555555666666555555555543 3444554
No 38
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.88 E-value=0.18 Score=48.55 Aligned_cols=132 Identities=19% Similarity=0.290 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063 444 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 523 (776)
Q Consensus 444 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L 523 (776)
+.+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-... ..+-.|..-|..|
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l~rriq~L 85 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHHHhhHHHH
Confidence 334444455555555555555555555555555555555554444444443332222221111 1122566666666
Q ss_pred HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 524 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 524 Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
|+++-+.-..---+...|..+....+-+.+++..|+.+|+....-++.|....+.+
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 66666554433334455556667778888889888888888887777776655443
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.88 E-value=0.23 Score=51.97 Aligned_cols=159 Identities=23% Similarity=0.296 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHhhhh--HHHH
Q 004063 429 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-------LVELESF--RNEY 499 (776)
Q Consensus 429 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-------~~~le~l--~aEr 499 (776)
|..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..++.++-+++.+|+.- ...+.++ .-||
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~ 91 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334555666665555555555555555555555555555555555555555555555433 3333333 5678
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH-
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQE- 574 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQE- 574 (776)
.+...|...|.+|...|-.|++.|++++..+.-...-++..+.. +.+...+.+.++.-|..++..+.+..+.|-+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999998888888887776654333222222222 3333344445555555555555554444443
Q ss_pred ---HHHHHHHHHHhhc
Q 004063 575 ---EKKMMQSKLRKAS 587 (776)
Q Consensus 575 ---EKklLqSKLR~as 587 (776)
+.=....++|+..
T Consensus 172 l~~ell~~yeri~~~~ 187 (239)
T COG1579 172 LDPELLSEYERIRKNK 187 (239)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 3344456666443
No 40
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.87 E-value=1.6 Score=51.87 Aligned_cols=168 Identities=22% Similarity=0.295 Sum_probs=124.3
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 004063 411 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE------------- 477 (776)
Q Consensus 411 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~------------- 477 (776)
-|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~ 335 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE 335 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 4667777788999999999999999999999999999988888888888888899888888888871
Q ss_pred ------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 004063 478 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 539 (776)
Q Consensus 478 ------------------mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleK 539 (776)
++-|+....+-..++..++.|..+.+.+++...++.+. +...++.++..|......+++
T Consensus 336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 24455555555566666677777777766666664443 334455555555555555566
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
....-.+.+..+++++..+..-.++-+..|...|+|+-.+--
T Consensus 413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSE 454 (717)
T PF09730_consen 413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSE 454 (717)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666666777888888888888888888788888877654433
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.86 E-value=0.12 Score=58.76 Aligned_cols=146 Identities=19% Similarity=0.277 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
+.+.|...++..+.|..|=+.|..+|- .-...+.+++.+++.++.++..-...+..-...|..++-++.+..++...
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777763 33555667777777777777766666667777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh--HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ss--i~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+..+.+.+.+.+..||..+..+++.++.++..+..+++.+.. +-.--.....-+..++++.+.|..+|.
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~ 465 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE 465 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888777766665552 111123445555566666666655554
No 42
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=1 Score=54.99 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004063 441 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 520 (776)
Q Consensus 441 R~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEV 520 (776)
|.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..-...|..++.|-.-+..+.+++...--.|.-++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45555555666666666666666677777788888888888888888888888888888888888888888887888888
Q ss_pred HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCcc
Q 004063 521 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSI 593 (776)
Q Consensus 521 V~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa~ 593 (776)
-.|++++..-+-++=-+...++++.+++..-..+++.|...+..+..+=+.+-+-...|+.+.+- ..-.|+..
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s 383 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYS 383 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888888877777778889999999999999999999999999999999999999999998886 44455543
No 43
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.78 E-value=0.74 Score=46.61 Aligned_cols=162 Identities=19% Similarity=0.291 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
.+++.|+.+|+++..|--.|.+---++.+--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el 98 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999998877776666555555555555555544444445555566655555543332222222222222
Q ss_pred HHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063 500 ANVRLECNAADERAKILAS-----EVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIE 570 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAa-----EVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stId 570 (776)
-. .....-+.+.|.. |...|..++-.+...--...+.+.. +.-.-.++.+++..-.+--..++..+.
T Consensus 99 ~k----~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~ 174 (194)
T PF15619_consen 99 LK----TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVK 174 (194)
T ss_pred HH----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222222222 2333333333332221111222222 222225666666666666778889999
Q ss_pred HHHHHHHHHHHHHHh
Q 004063 571 ALQEEKKMMQSKLRK 585 (776)
Q Consensus 571 aLQEEKklLqSKLR~ 585 (776)
.|++|...|+.+|+.
T Consensus 175 ~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 175 SLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999973
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.72 E-value=0.13 Score=64.78 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRA------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
.+.++.|+.-++.|.+++-.+.+-++...+ -.+.+..+-+.|..+..++...+.+++.+++.++.++..-...+
T Consensus 313 ~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeL 392 (1486)
T PRK04863 313 ARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777666555554443332 23345555566777777777777777777777776666666666
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIG------------------------LEEKALRLRSNELKLERQLENSQSEI 548 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~------------------------LEek~lqLRS~eLKleKElE~l~~Er 548 (776)
+.++.++...+.+...+..++..+...+.. .++++.+++....+++.++..+..++
T Consensus 393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655555555555444443 34444444455555555555555555
Q ss_pred HHHHHHHHhHHHhhhh
Q 004063 549 SSYKKKISSLEKERQD 564 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~ 564 (776)
+.+++++.++.++-+.
T Consensus 473 eql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 473 SQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5555555555544444
No 45
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.70 E-value=0.17 Score=62.19 Aligned_cols=169 Identities=24% Similarity=0.294 Sum_probs=108.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---
Q 004063 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL--- 489 (776)
Q Consensus 417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~--- 489 (776)
...+.-+-|++.|+.++.+...|+| ++.+|++.=..|+......-++ .-..+.+++++|+-+++..+.-+
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL 538 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999998 4444444433333322222222 22344555555655555444332
Q ss_pred HHhhhhHHHHHHHHHhhhH-----------HHHHHHHHHHHHH---HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHH
Q 004063 490 VELESFRNEYANVRLECNA-----------ADERAKILASEVI---GLEEKALRLRSNELKLERQLENSQSEISSYKKKI 555 (776)
Q Consensus 490 ~~le~l~aErDaAq~E~n~-----------A~ERaK~LAaEVV---~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ 555 (776)
-.+.+++.+.+.+.+++.+ ..+-.+.++.|.. .+++++-.+-....|+.++..+++.+...++++.
T Consensus 539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~ 618 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR 618 (1317)
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333445555555555553 3334444444444 7888888888888999999999999999999998
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 556 SSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 556 ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
..+--++..+...|.-||+..+.+...++|+-.
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 888888888777777777666555555554433
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.66 E-value=0.13 Score=53.07 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063 673 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720 (776)
Q Consensus 673 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 720 (776)
+..+..|=.++...+.....+++.|+..|..|.+.|..+.+++.-...
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~ 258 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH
Confidence 344444555555556666666666667777777777666666654433
No 47
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.62 E-value=3 Score=51.61 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=35.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063 664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720 (776)
Q Consensus 664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 720 (776)
..++.|..-|..+..+.+++=..|.........++..-..+..+++-..+.|+-+..
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKN 663 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445667777777777776666666666666666666666666665555555444433
No 48
>PRK09039 hypothetical protein; Validated
Probab=96.60 E-value=0.15 Score=55.05 Aligned_cols=108 Identities=14% Similarity=0.197 Sum_probs=51.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
+..+.+.+.|+..|.+|++ =++|.| .-...|-.+-.+|..+|..-...-..|+...+.+......-...+..+
T Consensus 49 ~~~~~eL~~L~~qIa~L~e-~L~le~------~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l 121 (343)
T PRK09039 49 SGKDSALDRLNSQIAELAD-LLSLER------QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGEL 121 (343)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHH
Confidence 4567777777777777542 122221 222333333344444444222222222222221111000111223334
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
..+.++.+...+++.-+...|.+|+..|++++-.+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777677777776666665544
No 49
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.50 E-value=0.11 Score=56.31 Aligned_cols=141 Identities=17% Similarity=0.261 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 435 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 435 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-... ......+..|+......+.+|.++.+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence 5667777788888888888888888888887766666666666655544332 22333445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhh--------------hHHHHHHHHHHHHHHHH
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEKKMMQ 580 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~--------------~l~stIdaLQEEKklLq 580 (776)
.|+.++..+-++.. +|+.+++ .+++...++..++.-+-.... -++.-|..+|||+.++.
T Consensus 144 qLe~d~qs~lDEke-----El~~ERD--~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 144 QLERDLQSLLDEKE-----ELVTERD--AYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888765 4455555 566667777777665543322 23444555566666655
Q ss_pred HHHH
Q 004063 581 SKLR 584 (776)
Q Consensus 581 SKLR 584 (776)
+.+-
T Consensus 217 ~~i~ 220 (319)
T PF09789_consen 217 QTIN 220 (319)
T ss_pred HHHH
Confidence 5443
No 50
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.40 E-value=0.00082 Score=77.21 Aligned_cols=163 Identities=28% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---- 495 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~Es----La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---- 495 (776)
-|++.|.+|.+||-.|+-.+...+.-..+ ..+.+..+..+++.-...+.+|++++++++..+.-+...++.+
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887666544433222 2244555666777777777777777766655443333333332
Q ss_pred --------------------HHHHHHHHHhhhHHHH------H-------HHHHHHHHHHHHHHHHHHHhHhhhhHHHhh
Q 004063 496 --------------------RNEYANVRLECNAADE------R-------AKILASEVIGLEEKALRLRSNELKLERQLE 542 (776)
Q Consensus 496 --------------------~aErDaAq~E~n~A~E------R-------aK~LAaEVV~LEek~lqLRS~eLKleKElE 542 (776)
+-|+|..+..+..+.- + ...|-.+|..|+++..-+.-..+.++.++.
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332222111 0 011223444455544444444555566665
Q ss_pred h---hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 543 N---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 543 ~---l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
+ ++..+..|++++.-++.++......++.|+.|.+.|+.++..+
T Consensus 357 ~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 357 KARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -----------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5566777777777777777777777777777777777776643
No 51
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.39 E-value=0.1 Score=58.21 Aligned_cols=104 Identities=17% Similarity=0.299 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 549 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~ 549 (776)
++..+..+++.++.|+..-.-+...+..||.+++.|+.++.+ |-...+++...+|-+-+|+..++..+.....
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~-------e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQ-------EREAVRQELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888777777778888888888888887765 4444556666777788888888888887777
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ 580 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKklLq 580 (776)
.+..++.-+..+|.+++-..+.||-+.|.||
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888888777
No 52
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.35 E-value=0.19 Score=48.67 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=49.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
.....+.++..++.++++.+......+..++.++...+.......++.+.+..++..+++++.+++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777777777778888888887777777777888888888888888877776
No 53
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.35 E-value=1.4 Score=45.39 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 498 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 498 (776)
++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+= +--.....|++++|.|+.. +..+-++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~ 82 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE 82 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 44566666667788888999999999999999999988876553 2223334556666666553 2333344
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063 499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 554 (776)
Q Consensus 499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q 554 (776)
+....-.|-....-.+.|-++|..|+++-.++-...=++.+..+.|..+...+..+
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 44444444444444555566666666655555444444444444444444444433
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.33 E-value=0.43 Score=56.27 Aligned_cols=130 Identities=22% Similarity=0.303 Sum_probs=66.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHhh-hhHHHHHH--------HHH---------hhh
Q 004063 449 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELE-SFRNEYAN--------VRL---------ECN 507 (776)
Q Consensus 449 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a---Q~~~le-~l~aErDa--------Aq~---------E~n 507 (776)
-.++|-.||+.|-.+++.....-.+-|.-|..|++.++. ++..+| .|.+|+-+ |+- ||.
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~ 540 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECA 540 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhH
Confidence 345566677777777766555555545444444433332 222222 33444433 222 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+ .+-.-+-.||.++.+||.+--..+-++-.+..|+..++.....-.+|-..|.+.|-+|||+-.+|+.-|.
T Consensus 541 e------~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 541 E------SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 2333344555666666543322233333344444333332122456777888889999998888876654
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.30 E-value=0.5 Score=57.85 Aligned_cols=166 Identities=23% Similarity=0.336 Sum_probs=100.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E-----NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
+..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++ .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus 233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999887 56776555555444444444433 234567888888777776666666666666555544
Q ss_pred hhh--------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhHHHhhhhHHH----
Q 004063 493 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKALR-------LRSNELKLERQLENSQSE---- 547 (776)
Q Consensus 493 e~l--------------~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq-------LRS~eLKleKElE~l~~E---- 547 (776)
+.+ +.|-++---||..|.+..+.+..|+..+++++.. +++.-=.++|++..++.+
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~ 391 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE 391 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 4566666677788888888888888777766543 333323334444444433
Q ss_pred ----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 548 ----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 548 ----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+...+.++.-|.+|.-.++..+..|.+|...++.+++
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555566655
No 56
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.29 E-value=0.063 Score=57.21 Aligned_cols=115 Identities=20% Similarity=0.292 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFR------NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 543 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~------aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~ 543 (776)
.+.+|+.++++.+.|.+.+..-|..+. .+.+....+..+....-+.|..|+..||.+..++..+.-+++++++.
T Consensus 10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888777776665 33444445555544555555555555555555555544445555555
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+..+...+-+.+.....+..+++.+.+.|......++..|.
T Consensus 90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444455555544444444444444444444444444333
No 57
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=96.27 E-value=0.59 Score=53.16 Aligned_cols=127 Identities=13% Similarity=0.239 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH----HHHHHHHHHHHHH
Q 004063 447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA----DERAKILASEVIG 522 (776)
Q Consensus 447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A----~ERaK~LAaEVV~ 522 (776)
+.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.+....+- .+--+.|..|-..
T Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666655 55666666666666777777666666666666655544443333222 2222357778888
Q ss_pred HHHHHHHHHhHhhhhHHH------hhhhHHHHHHHHHHHHhHH----HhhhhHHHHHHHHHH
Q 004063 523 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQE 574 (776)
Q Consensus 523 LEek~lqLRS~eLKleKE------lE~l~~Er~S~~~q~ssi~----kER~~l~stIdaLQE 574 (776)
|-.++++-++..+..... |.=+++.+..+++++..+. ++|..|...|..|++
T Consensus 118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998888875444 3448899999999999877 457788888877765
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.24 E-value=0.056 Score=53.36 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
.-.+.|++-+.++-..|-.++--|-....-.+.|-.+..+...+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555677777766766677777777777788888888889999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
.+.+.+++.+.++.+.|..|=..|=+|.++.+..+-
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997765543
No 59
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.22 E-value=0.065 Score=57.11 Aligned_cols=120 Identities=23% Similarity=0.320 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
+..|+++++++..|+-.+++-|.+-+ .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~ 75 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE 75 (314)
T ss_dssp ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999998776 000112334556666666666554444444444444443
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 577 (776)
|.+|...||++..++. ++-+++-.+...+..++.....||+++..-++.++.++.
T Consensus 76 --------------l~~el~~le~e~~~l~-------~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 76 --------------LDQELEELEEELEELD-------EEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444332 222244445555666666666666666666666666654
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.22 E-value=0.73 Score=57.02 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=84.3
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004063 455 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 534 (776)
Q Consensus 455 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e 534 (776)
.|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-++.|+......+.-+.+-..-.
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~ 1684 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGS 1684 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455667777889999999999999988888888888888899999998888888877765544333333222233
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH-------HHHHHHHHHHHHHHHHHHh
Q 004063 535 LKLERQLENSQSEISSYKKKISSLEKERQDFQ-------STIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 535 LKleKElE~l~~Er~S~~~q~ssi~kER~~l~-------stIdaLQEEKklLqSKLR~ 585 (776)
+-++.-+|.|+.|.+.+-.+...-+..=++|+ --|+.++.|+.-|..+|+.
T Consensus 1685 ~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1685 QAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 44444555666665555544443333333333 2345566666667777764
No 61
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=2.8 Score=52.16 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=36.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh
Q 004063 666 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA 724 (776)
Q Consensus 666 IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m~ 724 (776)
++.+-.-|..+..|...+...|.........|+.+-+.+++|+++.++.|.-..++.-+
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kV 602 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKV 602 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33344444444446666666666666666667777777777777777766665555443
No 62
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.19 E-value=0.021 Score=56.35 Aligned_cols=131 Identities=24% Similarity=0.298 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEI----------------------KVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----------------------~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
|..|...||+....+..|+..-..|+.+. ..-...+..+..|...++..+..-..|..
T Consensus 19 ~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 19 FAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45677777777777777777776666531 11122334455666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as 587 (776)
.+-.++..|+.++......--.+++++..+..++.....++....+-=+.|+.++.+||-+..+++.|++++.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555554444444555555566666666666665555556677777777777777777777653
No 63
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.17 E-value=1.8 Score=44.17 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 466 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq 466 (776)
++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~ 47 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL 47 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777766543
No 64
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.15 E-value=1.2 Score=49.01 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhh------------HHHHHHHHHHHH-hHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 519 EVIGLEEKALRLRSNELKLERQLENS------------QSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~l------------~~Er~S~~~q~s-si~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
++..|+.++.+++.+--.++.++.++ ...+.+++.+.. .+..+...++..++.++++++.++.+|.+
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444444444443 233333333332 44555556666666666666666666653
Q ss_pred ----hccCCCc
Q 004063 586 ----ASGSGKS 592 (776)
Q Consensus 586 ----asa~gKa 592 (776)
++-.|.+
T Consensus 317 ~~I~AP~dG~V 327 (457)
T TIGR01000 317 GVIKAPEDGVL 327 (457)
T ss_pred CEEECCCCeEE
Confidence 4555554
No 65
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.07 E-value=1.2 Score=45.18 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HhHhhhhHHHhhhhHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL---RSNELKLERQLENSQS 546 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL---RS~eLKleKElE~l~~ 546 (776)
.+..||++|+.++.......-.+..+..|-....--+..|.+....|..++...+.....| ++.--.+++++..++-
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444443334444444444444444444444444444444443333322 2222233566666666
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 547 EISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 547 Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
|-+....++..++.||+.|...++..-
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666766665555443
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.06 E-value=1.2 Score=47.93 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=5.9
Q ss_pred ccccccCCc
Q 004063 410 QHGFYSTKH 418 (776)
Q Consensus 410 ~~~F~s~~~ 418 (776)
|.+||+.+.
T Consensus 101 F~EY~~a~~ 109 (312)
T smart00787 101 FKEYFSASP 109 (312)
T ss_pred HHHHHcCCH
Confidence 777776543
No 67
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=96.02 E-value=0.89 Score=45.93 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 506 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 506 (776)
|.+++..-..-++.+|..+..+...... +......+...+++++...+.+...|+..+..|+++-.+.
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444445444444444432 3334455566777888888888889999999999988888
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH--HHHHH
Q 004063 507 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM 578 (776)
Q Consensus 507 n~A~ERaK~-LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ--EEKkl 578 (776)
+.+..+... ...|+.-++.++.+....--+++.+.+.+..+...++..+. ..+....+.|| ||.+.
T Consensus 138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri 206 (236)
T cd07651 138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI 206 (236)
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 887776433 34788899999999888888888888888888888888776 44677888888 44443
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.01 E-value=0.76 Score=56.15 Aligned_cols=167 Identities=20% Similarity=0.282 Sum_probs=92.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004063 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 496 (776)
Q Consensus 417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 496 (776)
.-.++...+..-|+++-++=-..+|++-..++-..+|. ..+.+.++.++..+++|+.+++.+.+.++++...++.-.
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666555556666666655555553 356777888888888888888777777777776666666
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHhHhhhhHHHhhhhHH--------------HH
Q 004063 497 NEYANVRLECNAADERAKILASEV--------------IGLEEKALRLRSNELKLERQLENSQS--------------EI 548 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEV--------------V~LEek~lqLRS~eLKleKElE~l~~--------------Er 548 (776)
-||.+.++|+.+-..--+.+..+. ..|+.++...-.+.-|++.++...+. +.
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence 666666666655444334444444 44443333333333333333333222 22
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
+.|.++.+..+.+|+.+.-.+++++.|++.+-.+++..
T Consensus 895 e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 895 EKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred HHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 23333334444555555555566666655555555543
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.00 E-value=0.31 Score=56.10 Aligned_cols=129 Identities=24% Similarity=0.286 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHH----------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063 448 ALSESLAAENSSLTDSYNQQRSV----------------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 505 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~----------------------v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 505 (776)
+=|-.|.+||..|.-++|-..+. |.+-.++..+++.+|..-..+++.++.=|+-+..+
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~ 135 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKE 135 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33556667777777776655433 33334455555555555555555565555555555
Q ss_pred hhHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 506 CNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 506 ~n~A~ERaK-------~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
+..|.+..+ .+.+|...+-.++..+....-.+.+|..++..++..+++++..-..-|.+++..+..|-||+
T Consensus 136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 136 RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555554 44455554444444444444444555555555555555555544445555554444444443
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.96 E-value=1.1 Score=47.65 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH----HHHHHHHHHHH
Q 004063 513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ----EEKKMMQSKLR 584 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ----EEKklLqSKLR 584 (776)
...+..|+..+..++...|-.--.++.+++.+..++.....+...+..+=.++...++.++ .|...|+.+++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3333444444444444333333333344444444443333333333333333333333222 34455555544
No 71
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.96 E-value=0.066 Score=46.43 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
....+..|+..+.++.+.+.++..++..+..|||.+...+..|-+.+..|.+|+..|..++-..|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678899999999999999999999999999999999999999999999999999999865554
No 72
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.96 E-value=1.1 Score=56.08 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
+++..++.+|++|.++.-+|.+=+..-+..++-... ..+..|-.....+.+++.+++.++.++..-..+++.+..++
T Consensus 230 ~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1353)
T TIGR02680 230 EQLDEYRDELERLEALERALRNFLQRYRRYARTMLR---RRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDART 306 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888887777777766666653332 33455666666666666666666666666666666666666
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 004063 500 ANVRLECNAADERAKILA 517 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LA 517 (776)
+.+..+...++++...|.
T Consensus 307 ~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 307 EALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666666666666655554
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.89 E-value=1.1 Score=43.31 Aligned_cols=127 Identities=19% Similarity=0.297 Sum_probs=98.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE---VIGLEEKA 527 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaE---VV~LEek~ 527 (776)
+.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.|.++..+..|.+.+-....- +..|..+|
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence 567778899999999999999999999999999999999999999999999988888887776665543 33455544
Q ss_pred HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 528 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 528 lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
..| +.+|+....-+..+..++.-+...-+++..-+.+|..+..-+..|+-
T Consensus 83 q~L-------Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 83 QLL-------EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 433 77777777777777777777777777777777777766666655554
No 74
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.82 E-value=6.1 Score=47.30 Aligned_cols=122 Identities=22% Similarity=0.370 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 518 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAa 518 (776)
|+-.|.+.+......-.||+-|....++.+.....|.-+..+|+.||+-+-..=.-+-.+| . .|..
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy-------s-------elEe 104 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY-------S-------ELEE 104 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------H-------HHHH
Confidence 3444555555555555666666665555555555555555555555444333222222222 2 2556
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH-------HHHhHHHhhh----hHHHHHHHHHHHHHH
Q 004063 519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKK-------KISSLEKERQ----DFQSTIEALQEEKKM 578 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~-------q~ssi~kER~----~l~stIdaLQEEKkl 578 (776)
|-|.|++.|--||++++ |.|++++|+.+..- ++.-+.+-|. +|.-.+++||.|...
T Consensus 105 ENislQKqvs~Lk~sQv----efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReq 171 (717)
T PF09730_consen 105 ENISLQKQVSVLKQSQV----EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQ 171 (717)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888 45566666665554 4444444343 577788999988754
No 75
>PRK11281 hypothetical protein; Provisional
Probab=95.81 E-value=0.25 Score=60.79 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 517 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA 517 (776)
..+.++..++.+.|+++...-..+......-++||....+|..|...+.
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555556666666666655444
No 76
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=0.92 Score=52.61 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=42.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-------HHHHHHhHHHHHHHHHh
Q 004063 666 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM 723 (776)
Q Consensus 666 IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR-------KLE~qtQRLELltsq~m 723 (776)
+++.+++|.|+...-..+-..|....+.|-..|+.+-|+.+ +||...+.|.|..=+.|
T Consensus 448 ~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m 512 (581)
T KOG0995|consen 448 FSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM 512 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888887777878888888888888877777654 46667776666555554
No 77
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=1.3 Score=54.84 Aligned_cols=149 Identities=20% Similarity=0.284 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
..-|+.-||..-.+|+.+.-+++.++..-+.+-.|++.|...-+.-...+. +.+..|+++-.+-..+...+..|+.-
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~---e~~~~l~~~t~~~~~e~~~~ekel~~ 490 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD---EILDSLKQETEGIREEIEKLEKELMP 490 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 344556677777778888888888887777777777777766655443332 22223333333333333344444444
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLE-------EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LE-------ek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
.....+.|..+.+....|..-|. .++..+...-++++..+++-+.+++++...+.+..-|+.++.+.+..|.
T Consensus 491 ~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 491 LLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 44444444444444444444333 2333344444444444444444444444444444444444444444333
No 78
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.81 E-value=9.8 Score=49.58 Aligned_cols=213 Identities=23% Similarity=0.250 Sum_probs=142.3
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
+..--..||+-||.- ..++.+|+.+.-||.-....|..|..|...-.-.+..+++....+.-++..|.+++...+.
T Consensus 379 ~~~~~~sLtk~ys~~----~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q 454 (1822)
T KOG4674|consen 379 LIRPGSSLTKLYSKY----SKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQ 454 (1822)
T ss_pred hcccchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345566666654 3456666666667777777788888888888888888888888888899999999999999
Q ss_pred HhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccc
Q 004063 533 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL 612 (776)
Q Consensus 533 ~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDL 612 (776)
...+++++++.++.-+..+.++.. .+..++..|+.++.+|--.|+-+-.+.+.... .+ +|.
T Consensus 455 ~~~~~e~~~~~l~~~~~~~~renk-------~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~-s~---------~~~-- 515 (1822)
T KOG4674|consen 455 KIQKLEKELESLKKQLNDLERENK-------LLEQQISDLSRQVNVLLLELDELRKGSKITVS-SD---------STE-- 515 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-cc---------ccc--
Confidence 999999999999888888888888 45566777777777776666654443333211 00 000
Q ss_pred cccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHH----------HHHHHHHHH
Q 004063 613 AITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALI----------SELALEKEE 682 (776)
Q Consensus 613 ai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLi----------sELa~ERer 682 (776)
.++ .+..|+-++|-...||+-|. .+|+..+|.
T Consensus 516 ------~es--------------------------------~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~ 557 (1822)
T KOG4674|consen 516 ------NES--------------------------------DSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEA 557 (1822)
T ss_pred ------cCc--------------------------------cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 11456666666666666553 333333333
Q ss_pred HHH-----HHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH-HHHHHHhhhh
Q 004063 683 LVQ-----ALSSELAQSSKLKDLNNELSRKLEHQTQRLE-LLTAQNMANE 726 (776)
Q Consensus 683 avs-----aLa~esr~~~dLk~lN~ELsRKLE~qtQRLE-Lltsq~m~~e 726 (776)
... -.-+....|..+.+.=++|...|+.+.||++ |++.+.|.++
T Consensus 558 ~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e 607 (1822)
T KOG4674|consen 558 AEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKE 607 (1822)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2333445677788888899999999999998 5566667543
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.78 E-value=1.6 Score=44.48 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=38.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHH-------HhHHHhhhhHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKI-------SSLEKERQDFQS 567 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLR-------S~eLKleKElE~l~~Er~S~~~q~-------ssi~kER~~l~s 567 (776)
...++..|.+|+..+...+..||+++..+. ..+-|+....+.+...+..+..++ ..++..=..|+.
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554432 222222222233334444444444 444444444555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004063 568 TIEALQEEKKMMQSKLR 584 (776)
Q Consensus 568 tIdaLQEEKklLqSKLR 584 (776)
.|+.|.+++.-...+.+
T Consensus 205 ~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 205 EIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555544444443
No 80
>PF13514 AAA_27: AAA domain
Probab=95.77 E-value=0.8 Score=55.76 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHh
Q 004063 672 LISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQ 713 (776)
Q Consensus 672 LisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQ 713 (776)
-|..++.++.++.+.++....++.++...-..+..+|+.+.+
T Consensus 453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 494 (1111)
T PF13514_consen 453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAA 494 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666655555555555544
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.75 E-value=3.7 Score=49.06 Aligned_cols=243 Identities=22% Similarity=0.247 Sum_probs=118.6
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004063 456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--CNAADERAKILASEVIGLEEKALRLRSN 533 (776)
Q Consensus 456 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E--~n~A~ERaK~LAaEVV~LEek~lqLRS~ 533 (776)
+|+.|.+.|-| .|.+|.+++--+-.|..+-+-...+++.|.+++... +-+-+|....|.+|=..|-.+.+.- |.
T Consensus 399 ~~ssl~~e~~Q---Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q-s~ 474 (961)
T KOG4673|consen 399 EVSSLREEYHQ---RVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ-SA 474 (961)
T ss_pred cccchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence 34455555544 467777777777777777777777788887777654 4456667777777777776665522 22
Q ss_pred hhhh----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCccccccccccc
Q 004063 534 ELKL----ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTST 609 (776)
Q Consensus 534 eLKl----eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTST 609 (776)
.+|- .|+.+.+. ...-.++..+.+|-..|...++.--|=-|.++..+.++.+.-+-. -..+..++.+ .
T Consensus 475 iIkKLRAk~ke~etl~---~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq-~~~~~~sr~~----~ 546 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLE---EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQ-KDYYSNSRAL----A 546 (961)
T ss_pred HHHHHHHHhhhhhHHH---HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHH----H
Confidence 2221 01111111 111123334444444444333332222222222222222211110 0000001111 1
Q ss_pred ccccccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 610 EDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSS 689 (776)
Q Consensus 610 dDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~ 689 (776)
+||.---.+ -+-+.+++ . ||....-+ +--|.+|..++ .|..-+..=|..|...=..
T Consensus 547 ~~le~~~~a----~qat~d~a----------~-----~Dlqk~nr---lkQdear~~~~--~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 547 AALEAQALA----EQATNDEA----------R-----SDLQKENR---LKQDEARERES--MLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHHH----HHHhhhhh----------h-----hhHHHHhh---hhhhHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 111000000 00011111 1 11111111 11344444443 4555555556666666666
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhhhccccCCCC
Q 004063 690 ELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD 734 (776)
Q Consensus 690 esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m~~e~~~a~~~d 734 (776)
+-++-+-|+.++-+|.|+|++...|-|-++.+-=+.--++.|+|.
T Consensus 603 aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE 647 (961)
T KOG4673|consen 603 AARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE 647 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 777888999999999999999999999888775544444555553
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.75 E-value=0.7 Score=53.35 Aligned_cols=274 Identities=19% Similarity=0.258 Sum_probs=150.9
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------
Q 004063 423 AALEQHIEDL--------TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV------- 487 (776)
Q Consensus 423 aaLqqhIeDL--------T~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a------- 487 (776)
.+|+.-|+.| +.=|..+.-.|..++.+.+.-+.+-..+-..+......+++|+..++..++++.+
T Consensus 66 ~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~ 145 (546)
T KOG0977|consen 66 RKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDD 145 (546)
T ss_pred HHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566666655 3447778888999999999999999999999999999999999988888665544
Q ss_pred HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHH
Q 004063 488 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS 567 (776)
Q Consensus 488 Q~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~s 567 (776)
++..+..+.+|+.-+......-.+-.+.|-+|...|.+.+.++| ++++....-+..+..+++ .|..
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r-------~~ld~Etllr~d~~n~~q-------~Lle 211 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR-------KQLDDETLLRVDLQNRVQ-------TLLE 211 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHhHHH-------HHHH
Confidence 44444555555555555555545555555555555555544443 333333333333333333 2233
Q ss_pred HHHHHH----HHHHHHHHHHHhhccCCCc--cC------CCCCcccccccc-cccccccc-ccccc-------cc-----
Q 004063 568 TIEALQ----EEKKMMQSKLRKASGSGKS--ID------FGKTAASTVNAS-TSTEDLAI-TDTTL-------DN----- 621 (776)
Q Consensus 568 tIdaLQ----EEKklLqSKLR~asa~gKa--~~------~ek~~a~~kDAS-TSTdDLai-~d~~~-------es----- 621 (776)
.|+-|+ .|.+.++.+++.-.-++.- .. +.+..+.-+..+ +.=+|++. ..... +.
T Consensus 212 el~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 212 ELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQ 291 (546)
T ss_pred HHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchh
Confidence 344444 4555555555542211110 00 000000000001 11111211 00000 00
Q ss_pred --CCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004063 622 --SNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKD 699 (776)
Q Consensus 622 --Sn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~ 699 (776)
...|+. ..-..+..++ +.++. +.--=..+..-|.+|=..|..++..--+.|.+....+.+|++
T Consensus 292 ~~~rEEl~----~~R~~i~~Lr-----~klse------lE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mRe 356 (546)
T KOG0977|consen 292 NYAREELR----RIRSRISGLR-----AKLSE------LESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMRE 356 (546)
T ss_pred HHHHHHHH----HHHhcccchh-----hhhcc------ccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 001111 0111121222 11111 110111445567788888889999999999999999999999
Q ss_pred HhHHHHHHHHHH-----HhHHHHHHHHHhhh
Q 004063 700 LNNELSRKLEHQ-----TQRLELLTAQNMAN 725 (776)
Q Consensus 700 lN~ELsRKLE~q-----tQRLELltsq~m~~ 725 (776)
+=..|+-+|+.+ +=+.|+..=+.|..
T Consensus 357 ec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 357 ECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred HHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 999999988864 45678888888876
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.74 E-value=1.1 Score=51.07 Aligned_cols=158 Identities=14% Similarity=0.227 Sum_probs=101.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004063 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 496 (776)
Q Consensus 417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 496 (776)
+-..++..|++.|.+.-.-=-.| .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+.
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~ 330 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELK 330 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34778888888888733111111 3567777788888888888888877777777777788888888877777888888
Q ss_pred HHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 497 NEYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 497 aErDaAq~E~n---~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
.|.+...+.+. .-.++.+.+..++..|++++..+...--+.....+.+.++......++..+++++..+...|..|.
T Consensus 331 ~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 331 EEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877732 235566666667776666666443322222333444555555555555555555555555555555
Q ss_pred HHH
Q 004063 574 EEK 576 (776)
Q Consensus 574 EEK 576 (776)
.+-
T Consensus 411 k~E 413 (569)
T PRK04778 411 KDE 413 (569)
T ss_pred HHH
Confidence 433
No 84
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.74 E-value=0.69 Score=59.29 Aligned_cols=257 Identities=20% Similarity=0.226 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063 423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 502 (776)
Q Consensus 423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 502 (776)
-.|+|-.++++.+.-.+.-.+...+.=-+++-.++..+...+=.-+..+.+|++.+..++.+-..-.-.++..++|..+-
T Consensus 62 ~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l 141 (1822)
T KOG4674|consen 62 LRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEAL 141 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777666667777777788888878888888888888777755444444445555566666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH--------------HHHHHHHhHHHh----hhh
Q 004063 503 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS--------------SYKKKISSLEKE----RQD 564 (776)
Q Consensus 503 q~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~--------------S~~~q~ssi~kE----R~~ 564 (776)
+.+...-.++.+.+-.-+-.||.+..+..+..+-.+..++++..|.+ .+..+|..+..+ =.+
T Consensus 142 ~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~ 221 (1822)
T KOG4674|consen 142 ESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQ 221 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 66655555555555555555565555555555555554444444443 333344433333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCC
Q 004063 565 FQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLP 644 (776)
Q Consensus 565 l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P 644 (776)
|...|..+++++.+++.+..-+...-+- .+ +-..-...+|--.+++..++-.++ .
T Consensus 222 L~~~L~~~~~~~~~~q~~~~~l~q~~~e--Ls------~~ie~~~~~ls~~k~t~~s~~~kf--------------~--- 276 (1822)
T KOG4674|consen 222 LEEKLSDLKESLAELQEKNKSLKQQNEE--LS------KKIESLNLELSKLKDTAESSEEKF--------------E--- 276 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHhhhHHHHHHH--------------H---
Confidence 5555555555555555555422110000 00 000001111111112221111111 1
Q ss_pred cccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063 645 ESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 716 (776)
Q Consensus 645 ~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 716 (776)
+=..-|-+|-+=-...|.++..+..++.++|....+-++++...++|..-.|++..|-|+
T Consensus 277 ------------~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~ 336 (1822)
T KOG4674|consen 277 ------------KELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLS 336 (1822)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 011223355566667788888899888888888888888888888877666666666554
No 85
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=0.63 Score=56.83 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=98.6
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004063 415 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 494 (776)
Q Consensus 415 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 494 (776)
-+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+..
T Consensus 782 ~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666655555566667777777777777777777655555566777777777888888888888888
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 574 (776)
+..+.+.++.+.+.-...-+..--|+-++.-++-...+.--..+-+.+++.+|+.++.+.-....++=..|....+-+-+
T Consensus 862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ 941 (1174)
T KOG0933|consen 862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGD 941 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhH
Confidence 88888888888777777777766666433333332222222222233344555555544444444443344444444444
Q ss_pred HHHH
Q 004063 575 EKKM 578 (776)
Q Consensus 575 EKkl 578 (776)
||.+
T Consensus 942 ek~~ 945 (1174)
T KOG0933|consen 942 EKRL 945 (1174)
T ss_pred HHHh
Confidence 4443
No 86
>PF13166 AAA_13: AAA domain
Probab=95.73 E-value=1.3 Score=50.65 Aligned_cols=119 Identities=22% Similarity=0.347 Sum_probs=54.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 464 YNQQRSVVNQLKSEMEKLQEEIKVQLVE-------------LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~-------------le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
+.+-...+.+++..++.+.+.+..-... +..+....+.+...+.+..+....+..+...|..++...
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~ 403 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH 403 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544443211 122233333333444444444555555555565555443
Q ss_pred HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 531 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 531 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
.-.. ...+++.+..++..+.+++..+.++...+...+..++.+.+.|+.++.
T Consensus 404 ~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 404 LIAK--LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 223333444444555555555555555555555555555444444433
No 87
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.72 E-value=4.1 Score=44.56 Aligned_cols=41 Identities=37% Similarity=0.528 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004063 423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS 463 (776)
Q Consensus 423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~ 463 (776)
-.|+--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888887788888888888888888888877553
No 88
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.68 E-value=1.5 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEA 445 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~ 445 (776)
.+..++..|.++-.++-.|++.++.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776665554
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.62 E-value=1.3 Score=44.49 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=3.8
Q ss_pred cccccccch
Q 004063 651 LEGLAVNIP 659 (776)
Q Consensus 651 f~~~~~~Ip 659 (776)
+.|+...|+
T Consensus 225 ~~gs~s~i~ 233 (302)
T PF10186_consen 225 PSGSRSTII 233 (302)
T ss_pred cCccccchh
Confidence 344444444
No 90
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.61 E-value=1.5 Score=45.45 Aligned_cols=115 Identities=23% Similarity=0.272 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
-+..|+|+|.|+-.+ |.+++.-+.++-+.--.+-++||+....+..++..-+ .+|..=..+.+
T Consensus 25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA 87 (225)
T COG1842 25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence 348999999998655 5555444444444555566677765555544443321 11111112222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 501 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
.+|-++-+.|...+..++..+.+++....|+++.+..+...+..++.+...+
T Consensus 88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666676666666776666666666666665533
No 91
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.52 E-value=1.1 Score=45.66 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 493 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~EsLa-~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 493 (776)
..+-+.|++.|++...+--.+++.|++-..- .+.++ .--+.|..+.++.-..+.+++..+-.+..++..+....+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~ 116 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE 116 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 3455677788888888777777777765432 11111 012467777888888888888888888888888888888
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 494 SFRNEYANVRLECNAADERAKILASE--VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 494 ~l~aErDaAq~E~n~A~ERaK~LAaE--VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
.+......++....+++.+...+... ...-+.+...|....--+.-++.-+..|..+......++...|+-+...++.
T Consensus 117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~ 196 (240)
T PF12795_consen 117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR 196 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777776653000 1111222222222222223333334444444444455555555555555666
Q ss_pred HHHHHHHHHHHH
Q 004063 572 LQEEKKMMQSKL 583 (776)
Q Consensus 572 LQEEKklLqSKL 583 (776)
++.+...||..|
T Consensus 197 l~~~l~~Lq~~l 208 (240)
T PF12795_consen 197 LQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHH
Confidence 665555555443
No 92
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.51 E-value=2.6 Score=50.55 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 502 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 502 (776)
.=++-|-+++++|.-++=.--..+++.+..++.+++|..-+..+++-++..+|..
T Consensus 336 ~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~ 390 (775)
T PF10174_consen 336 QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK 390 (775)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443334444444444444444444434444443333333
No 93
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.51 E-value=4.4 Score=49.13 Aligned_cols=150 Identities=27% Similarity=0.336 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 426 EQHIEDLTQEKFALQRSLEASRALSESLAAENS-----SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 426 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-----aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
|.-|.||-.||++|+-.|---+-+.++.-.|-+ .+|+.| +-.|..|.+++.+++.+|..-...+-.+..|..
T Consensus 47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriy---Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq 123 (1265)
T KOG0976|consen 47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIY---RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ 123 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999776555556666555543 245555 346677777777777777666666666666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH----HHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 501 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~----~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
+.|--...+.++.|.-.-|++.+-.++- |++++|..-.+||-+. ..+-..|..-+-+++..+..--+|+
T Consensus 124 ~lQ~ti~~~q~d~ke~etelE~~~srlh-------~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 124 KLQDTIQGAQDDKKENEIEIENLNSRLH-------KLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 6666666666666655555554444333 2344444433443322 2222333444444555555555566
Q ss_pred HHHHHHHHh
Q 004063 577 KMMQSKLRK 585 (776)
Q Consensus 577 klLqSKLR~ 585 (776)
+.+.-|+.+
T Consensus 197 ~~le~k~~k 205 (1265)
T KOG0976|consen 197 KALEEKLEK 205 (1265)
T ss_pred HHHHHHHHH
Confidence 666555554
No 94
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.48 E-value=1 Score=48.90 Aligned_cols=163 Identities=20% Similarity=0.291 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH--
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-- 496 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-- 496 (776)
-.|+.|+-.++++ -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..----|--+.
T Consensus 61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~ 133 (306)
T PF04849_consen 61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSND 133 (306)
T ss_pred hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 3566666666665 4688999999999999999999999999999999999999999888654333322222
Q ss_pred HHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH-----------hhhhHH
Q 004063 497 NEYANVRLEC-------------------NAADERAKILASEVIGLEEKALRLRSNELKLERQ-----------LENSQS 546 (776)
Q Consensus 497 aErDaAq~E~-------------------n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKE-----------lE~l~~ 546 (776)
.|-....-.+ ..-.++.|.|..|-..|.+++.+|+......+.+ +..++.
T Consensus 134 ~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~ 213 (306)
T PF04849_consen 134 DEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQ 213 (306)
T ss_pred hhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcch
Confidence 1111111111 2334455555555555555555555333322222 222222
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 547 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 547 Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
.+..+..++..-.-|=...+.+|-.|+.+.-.||.|+++...
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~ 255 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA 255 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222222234456777777777888888886543
No 95
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.48 E-value=0.84 Score=50.13 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA 454 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa 454 (776)
....+.+.|.++.++...++..+...++..+.|-
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777666666555544443
No 96
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.37 E-value=0.0043 Score=71.51 Aligned_cols=55 Identities=31% Similarity=0.362 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 004063 667 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 721 (776)
Q Consensus 667 dsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq 721 (776)
.....+|.+|+.|+..+..-+.........++..+..|.|++-..+.-.+.+-++
T Consensus 367 ~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~ 421 (722)
T PF05557_consen 367 RELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQ 421 (722)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777777777766666666666666666666665555555555555444
No 97
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.35 E-value=0.78 Score=47.60 Aligned_cols=108 Identities=24% Similarity=0.292 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 550 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S 550 (776)
|.++++++++.++++..+.-...-|..+ +..|.+-+..|+.+...+++...+|+..-.+..++-+.|..++..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek-------~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEK-------LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544443333332223222 344555556777777778888888887777777777777777777
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 551 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 551 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
+..++..+..++..-..+.+.||.+...++..+++
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777666666554
No 98
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.35 E-value=4.2 Score=48.92 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=86.5
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 450 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 529 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq 529 (776)
-..|.++.++++..++....-+.-||..+...+++..--...++.|+.+++.+...|++++.+.-.++.|.-.+..++..
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~ 382 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED 382 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHhHhhhhHHHhhhhHHHHHHHH
Q 004063 530 LRSNELKLERQLENSQSEISSYK 552 (776)
Q Consensus 530 LRS~eLKleKElE~l~~Er~S~~ 552 (776)
+|...=+.+.++..++..++.+.
T Consensus 383 l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666665555544443
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.28 E-value=1.8 Score=47.13 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=87.1
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004063 414 YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 493 (776)
Q Consensus 414 ~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 493 (776)
.+......+.+||+-|.+|-+|-..|--...+-..-+.++-..-..|+... ..++......|..|.+|+.-..-...
T Consensus 154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 344455678899999999888888776655554444444444444444322 11222223344444444444444444
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
....|....+.+..+...|.|.++.|.+.|...+...+-.+-.+ ..|+.-++.+|. ++...+...|
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L-------~aEL~elqdkY~-------E~~~mL~EaQ 296 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL-------QAELQELQDKYA-------ECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHHHH
Confidence 44555555555556666777777777777766555554444444 344444445555 5667788888
Q ss_pred HHHHHHHH
Q 004063 574 EEKKMMQS 581 (776)
Q Consensus 574 EEKklLqS 581 (776)
||.|.+.+
T Consensus 297 EElk~lR~ 304 (306)
T PF04849_consen 297 EELKTLRK 304 (306)
T ss_pred HHHHHhhC
Confidence 88887654
No 100
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.14 E-value=5.7 Score=45.29 Aligned_cols=147 Identities=22% Similarity=0.263 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH-------H
Q 004063 440 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE-------R 512 (776)
Q Consensus 440 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~E-------R 512 (776)
...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|...++.++..+.+ -
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 344556666666666666666666666667777777777777776666666666666666666666654433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
.-.|...+..|..++.++|...-.++.++.+++.|+..++..+..++..=..++..+++-..--..+...++.+
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466666666666666666666666677777777777777777666665666666666665555666666643
No 101
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.14 E-value=3.3 Score=42.28 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 506 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 506 (776)
.|..++..-..-++.+|.-+..|..+.+.....+ ..+...|+.++...+.+...|.-.+.-|.++-.+.
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666665555543333 34445666666666667777777777777777666
Q ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 507 NAADERAKIL-----ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 507 n~A~ERaK~L-----AaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
..|....... ..|+.-++.++.+.+..--++..+-.....+...++.++. ..+....+.+|
T Consensus 137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q 202 (239)
T cd07647 137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ 202 (239)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 6665332222 3577788888887777777777776666666666666665 34556777777
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.06 E-value=8 Score=43.88 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=42.7
Q ss_pred HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 524 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 524 Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
.++++.+++.+..-++.+..+..|+..+.+++..-.+.++.=..++-+...+++-+..+++
T Consensus 184 q~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455556666666677777788888888888887777777666666666666666666666
No 103
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.02 E-value=2.5 Score=51.90 Aligned_cols=177 Identities=24% Similarity=0.344 Sum_probs=92.4
Q ss_pred cccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 004063 409 NQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ 467 (776)
Q Consensus 409 ~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ 467 (776)
+.--|...++-.+||.| ++|++ ||-++--+|++.+....+--+.|-+++++|....+.-
T Consensus 142 NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 142 NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45569999999999965 45554 5566667788888877777777777777776555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh------------
Q 004063 468 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL------------ 535 (776)
Q Consensus 468 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL------------ 535 (776)
... ...++.+|.|+.- --.+..+....||.+..+....|.+..+.|-.++..++.+.-.|++..=
T Consensus 222 rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~ 298 (1072)
T KOG0979|consen 222 RER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE 298 (1072)
T ss_pred HHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence 322 1233333333210 1112233345555555555555555555555555444444444433110
Q ss_pred ------hhHHHh---hhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 536 ------KLERQL---ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 536 ------KleKEl---E~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
|...-. .....++.....+++.+.+.+.+.+..|..+.+..-.+|..|.++..
T Consensus 299 ~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 299 LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 111111 11333444445555555555555555555555555555555554433
No 104
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.00 E-value=5.2 Score=41.45 Aligned_cols=242 Identities=21% Similarity=0.266 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004063 423 AALEQHIEDLTQE--------KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 494 (776)
Q Consensus 423 aaLqqhIeDLT~E--------KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~ 494 (776)
..|+..|..+..- +-.|.+.|...+...+.++.|+..|.-..+.....+..++...+.....+..-...+..
T Consensus 28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~ 107 (312)
T PF00038_consen 28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES 107 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666554 45578888888888888888888887777777777777777777776666666666666
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHhH-------hhh------hHHHhh-----------hhHH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLE----EKALRLRSN-------ELK------LERQLE-----------NSQS 546 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LE----ek~lqLRS~-------eLK------leKElE-----------~l~~ 546 (776)
++.+.+.+-....+...+...|..|+.-|. +++..||.. +++ +..-|. ..+.
T Consensus 108 lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~ 187 (312)
T PF00038_consen 108 LRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNRE 187 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhh
Confidence 666666666666666666666665554432 233333321 111 011111 1222
Q ss_pred HH-HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcc
Q 004063 547 EI-SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD 625 (776)
Q Consensus 547 Er-~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E 625 (776)
+. ..|..++..+......-...+..+++|.+.+..++..+.. +.. .| .... ..
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~--el~-----------------~l---~~~~----~~ 241 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQA--ELE-----------------SL---RAKN----AS 241 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HH---HHHH----HH
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhh--hhh-----------------cc---ccch----hh
Confidence 22 2344566666666666677888888888888887764332 110 00 0000 00
Q ss_pred cccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004063 626 THDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELS 705 (776)
Q Consensus 626 ~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELs 705 (776)
+ +..+ ..+-..--..++.....|..|+.|...+...+..-.+.+.+|-+.+--|.
T Consensus 242 L-------e~~l------------------~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 242 L-------ERQL------------------RELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp H-------HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------hhhH------------------HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 0 0000 00001111344556666777777777777777777777777777776666
Q ss_pred HHHHHHHhHH
Q 004063 706 RKLEHQTQRL 715 (776)
Q Consensus 706 RKLE~qtQRL 715 (776)
.++..-..=|
T Consensus 297 ~EIatYR~LL 306 (312)
T PF00038_consen 297 AEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555444433
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.94 E-value=6.2 Score=46.16 Aligned_cols=158 Identities=23% Similarity=0.313 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063 429 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL---KSEMEKLQEEIKVQLVELESFRNEYANVRLE 505 (776)
Q Consensus 429 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qL---k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 505 (776)
|+.+..+.-.|.-.+.+..+-.+....++..+-..|--..-.+.=| ..-|++|+.-+++-...+..|..+|+.++..
T Consensus 344 i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~p 423 (594)
T PF05667_consen 344 IEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAP 423 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333344444444444444444445555555555544333332222 3456777777777777788888888777765
Q ss_pred hhHHHHHHH------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH--HHHHHHHHHH----hHHHh
Q 004063 506 CNAADERAK------------------ILASEVIGLEEKALRLRSNELKLERQLENSQS--EISSYKKKIS----SLEKE 561 (776)
Q Consensus 506 ~n~A~ERaK------------------~LAaEVV~LEek~lqLRS~eLKleKElE~l~~--Er~S~~~q~s----si~kE 561 (776)
+-+--++.+ .+-.++..+++++..---..=++.++++++.. -|..|.+.+- -|.|-
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQ 503 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQ 503 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHH
Confidence 554444433 22333333333333221111133344444322 2445555443 33445
Q ss_pred hhhHHHH---HHHHHHHHHHHHHHHHhh
Q 004063 562 RQDFQST---IEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 562 R~~l~st---IdaLQEEKklLqSKLR~a 586 (776)
+.++.+. ...||.|...++-||.++
T Consensus 504 k~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 504 KEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5554444 356788888888888853
No 106
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.87 E-value=5.4 Score=44.02 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
..++..+...+..---+.+.+.+++..|+.++.
T Consensus 260 ~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 260 EKQLDALRLRYTDKHPDVIATKREIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence 444444444444444555666666666666543
No 107
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=94.86 E-value=4.4 Score=42.05 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~--------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
.|..++..-..=++.+|..+..|.++...+-. ....+...++.+|..+..+...|+..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk 140 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666554422 2334455566666666677777888888
Q ss_pred HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063 498 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570 (776)
Q Consensus 498 ErDaAq~E~n~A~ERaK~L-------AaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 570 (776)
-|+.+=.+...|..+.... ..|+.-++.++.+....--+++++-.........+...|. ..+-.+++
T Consensus 141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~------~~m~~~~~ 214 (258)
T cd07655 141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYM------EDMEQVFD 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHH
Confidence 8888877777777665432 3677777777777766666666665555555555444444 34667888
Q ss_pred HHH
Q 004063 571 ALQ 573 (776)
Q Consensus 571 aLQ 573 (776)
.||
T Consensus 215 ~~Q 217 (258)
T cd07655 215 KCQ 217 (258)
T ss_pred HHH
Confidence 888
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.83 E-value=5.9 Score=44.87 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 004063 422 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAEN 457 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L-~~s~~l~EsLa~EN 457 (776)
...+++-|+|+...+-.|+-.. ++.+.|++.|++-+
T Consensus 89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444 55556666666543
No 109
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.74 E-value=9.1 Score=46.67 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=38.6
Q ss_pred chhhHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhh
Q 004063 658 IPHDQMRMIHNINALISELALEK------EELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN 725 (776)
Q Consensus 658 Ip~DQlR~IdsInaLisELa~ER------eravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m~~ 725 (776)
-.+.+-.||+-|++|++.|+-.| +.+-.++.-+-.+|..|++ |.|+-+|++--+.+.+-
T Consensus 457 aIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA 521 (1265)
T KOG0976|consen 457 AIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA 521 (1265)
T ss_pred HHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence 45788899999999999887655 4444555555556666654 34555666655555443
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.71 E-value=1.8 Score=42.03 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=12.3
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 004063 453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 482 (776)
Q Consensus 453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 482 (776)
|..|-+.+-++.+.....+..++++...++
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333333344444444444444444443333
No 111
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.68 E-value=4.4 Score=44.00 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 420 EDFAALEQHIEDLTQEKF-------ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKf-------aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
..+.-||+.+|-|..||- +|.-+|++++.-++.--.|-.+|-+----.....+.|.....+|..++++-..-+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 456778888888988874 4566777777777666555555554433333344445555555555554444444
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
.-+-.-. +.+..+...|..|+-.+..++-
T Consensus 98 ~~lEgQl-------~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 98 NFLEGQL-------NSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 3333444455555554444444
No 112
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=7 Score=45.74 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHH
Q 004063 544 SQSEISSYKKKISSLEKERQDFQS 567 (776)
Q Consensus 544 l~~Er~S~~~q~ssi~kER~~l~s 567 (776)
.+.|+..+.+.+--|.++++.+.+
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.63 E-value=3 Score=42.76 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
..+.=.++++-.+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446677788889999999999999988899999999988888888888888877665554
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.62 E-value=5.3 Score=46.71 Aligned_cols=91 Identities=27% Similarity=0.305 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHhh
Q 004063 430 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR---NEYANVRLEC 506 (776)
Q Consensus 430 eDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~---aErDaAq~E~ 506 (776)
++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-..+-+. .=..-.+.-|
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3334445555666666666677777777777777777777777777777777777665544433332 1112222334
Q ss_pred hHHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEV 520 (776)
Q Consensus 507 n~A~ERaK~LAaEV 520 (776)
.+..+|...|+.+-
T Consensus 404 ~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 404 EASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555443
No 115
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=94.56 E-value=2.1 Score=45.50 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
..+.-++++++++++++..-..+|..|+.+..-.-. +.....+....|..+...++.++..+|+
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666777777766666666666665433221 2234455666677777777777766664
No 116
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.54 E-value=4.6 Score=44.13 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH-hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK-ERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k-ER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
.|..|..+|.+|+......+.+++.++.|.=-.+..+..=.. -=.-|++-++.|-.||+.||.+|-+.
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 355566666666555555556666665554444444331100 00123455556667888888887653
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.49 E-value=14 Score=46.72 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 004063 695 SKLKDLNNELSRKLEHQTQRLELLTAQNM 723 (776)
Q Consensus 695 ~dLk~lN~ELsRKLE~qtQRLELltsq~m 723 (776)
+++.++++.+-++|.+.++++|..-+|--
T Consensus 789 ~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~ 817 (1317)
T KOG0612|consen 789 KMLEKQLKKLLDELAELKKQLEEENAQLR 817 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66788888888888888888887666543
No 118
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.47 E-value=8 Score=43.47 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=49.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063 437 FALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 504 (776)
Q Consensus 437 faLqR~L~-~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 504 (776)
.+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+-|-.-.
T Consensus 106 ~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~ 174 (561)
T KOG1103|consen 106 ASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEM 174 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 578889999999988877776667788899999999999998777666655444444333
No 119
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=14 Score=43.68 Aligned_cols=121 Identities=26% Similarity=0.392 Sum_probs=78.0
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhHHHHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--------------RNEYANVRLECNAADERAKIL 516 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--------------~aErDaAq~E~n~A~ERaK~L 516 (776)
|+|-.|-.+=-.-||++ |-.|+-++.|+++++.--..+++.+ ..+|-..+-|+-+-..|-..|
T Consensus 92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666777765 3445555555555555444444433 456666667777777777666
Q ss_pred HHHH-------HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh-----h------hhHHHHHHHHHHHHHH
Q 004063 517 ASEV-------IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE-----R------QDFQSTIEALQEEKKM 578 (776)
Q Consensus 517 AaEV-------V~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE-----R------~~l~stIdaLQEEKkl 578 (776)
-+|- |.|+..+-.||.+++ |-|++++|+.++.-++..+-.- | .+|.-.++.||.|...
T Consensus 169 lseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReq 244 (772)
T KOG0999|consen 169 LSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQ 244 (772)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6555 455556777888887 6789999999998887765332 2 2345567777776643
No 120
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.42 E-value=3.4 Score=47.59 Aligned_cols=42 Identities=26% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004063 665 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR 706 (776)
Q Consensus 665 ~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR 706 (776)
-|++.+.+|.||--+=+-+-..|..+.+.|-.+|+.|.+.-+
T Consensus 488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~ 529 (622)
T COG5185 488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELV 529 (622)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356778888888888888888888888888888877765544
No 121
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=94.39 E-value=3.9 Score=42.53 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-----HHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-----LASEVIG 522 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~-----LAaEVV~ 522 (776)
.|++.|-.+-..|..=.+.|......+...|+++|.-...+...|+.-+..|.++-.+...|...... -..|+.-
T Consensus 78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK 157 (242)
T cd07671 78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK 157 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 46666766666677777888889999999999999999999999999999999888888777543221 2357778
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
++.++.+.+.+--+++++-+....+...++..+. ..+....+.+|
T Consensus 158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~------~~~~~~~~~~Q 202 (242)
T cd07671 158 SQNKAKQCRDAATEAERVYKQNIEQLDKARTEWE------TEHILTCEVFQ 202 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 8888887777777777777766666666666666 33556667777
No 122
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=8.3 Score=45.38 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh
Q 004063 478 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 557 (776)
Q Consensus 478 mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ss 557 (776)
+-.|+.|++.-+.+|+..++|.++.-....+-.+-...+..+...|-.++..++--|-++-.+-..|.+|-=++.++++.
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~ 188 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSN 188 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44455556655666666666666665555555555555666666666666555555555555555666666666666665
Q ss_pred HHH---hhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 558 LEK---ERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 558 i~k---ER~~l~stIdaLQEEKklLqSKLR 584 (776)
+-. |=..+.-+|.+|-||..+|-+.+-
T Consensus 189 LR~sQVEyEglkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 189 LRQSQVEYEGLKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 521 122345567888888888876554
No 123
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.32 E-value=7.5 Score=46.41 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh----------hhhHHHhhhh
Q 004063 475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS 544 (776)
Q Consensus 475 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e----------LKleKElE~l 544 (776)
.+-+-.++.++..|-.++..+..+.++..-+++.-..|++..+.++..++++..++ +.+ |.+.-|++.+
T Consensus 164 dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~ele~i 242 (716)
T KOG4593|consen 164 DSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEELEAI 242 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhHHHHH
Confidence 33344445555555555555555555555555555555555555555555544422 111 1122233332
Q ss_pred HHHHHHHHHHHHhHH-------Hhhh---hHHHHHHHHHHHHHHHHHHHHh
Q 004063 545 QSEISSYKKKISSLE-------KERQ---DFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 545 ~~Er~S~~~q~ssi~-------kER~---~l~stIdaLQEEKklLqSKLR~ 585 (776)
...+..+..++.-+. .|=- +..-++.-||||++.||+||+.
T Consensus 243 ~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 243 NKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 222222222211111 1111 2234677899999999999985
No 124
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.30 E-value=0.042 Score=63.63 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
+++......+.|..++..|+.++.++...-.+++..++.+...+.+++++..++.+||+-|...|+..-.|-
T Consensus 358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333444444445555555555555555555555666667777778888888888888888888777766554
No 125
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.23 E-value=0.013 Score=67.72 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 501 NVRLECNAADERAKILASEVIGLEEKALR 529 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~LEek~lq 529 (776)
-.+.....-.++++.|-...+.||+++.+
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555543
No 126
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.13 E-value=10 Score=46.49 Aligned_cols=60 Identities=25% Similarity=0.269 Sum_probs=36.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHH-----HHHhHHHHHHH-----HHHHhHHHHHHHHHhhh
Q 004063 666 IHNINALISELALEKEELVQALSSELA--QSSKL-----KDLNNELSRKL-----EHQTQRLELLTAQNMAN 725 (776)
Q Consensus 666 IdsInaLisELa~EReravsaLa~esr--~~~dL-----k~lN~ELsRKL-----E~qtQRLELltsq~m~~ 725 (776)
-|+|.+||-.+.+|=.+.+..|.++-. ..+.+ --.|+.+..+| ..++.-|+-++=+.||.
T Consensus 684 ~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~ 755 (980)
T KOG0980|consen 684 SDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAE 755 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHH
Confidence 578899999999998888888876532 22222 12234444444 34444445466666754
No 127
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.10 E-value=3.2 Score=51.20 Aligned_cols=135 Identities=29% Similarity=0.320 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 443 LEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 443 L~~s~~l~EsLa~ENsaL-------t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
+....+..++|..|-+++ ++.|+-|-..-..|+.+.++|+..++-...+++.+..|+.-++..+.+..+=.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii-- 520 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII-- 520 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333444455555555544 44444444455599999999999999999999999999988777655544322
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
.....+|.++.+. ..++++.++....++.++.+++....+.=+.=+..++.++.+....-+-+-
T Consensus 521 --~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~ 584 (1041)
T KOG0243|consen 521 --SQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLH 584 (1041)
T ss_pred --HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHH
Confidence 2233444444433 677788888888888888888887777777777777777766654444333
No 128
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.09 E-value=5.7 Score=43.92 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=35.5
Q ss_pred hhHHHhhhhHHHHHHHHHHHHhH--------------------HHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 536 KLERQLENSQSEISSYKKKISSL--------------------EKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 536 KleKElE~l~~Er~S~~~q~ssi--------------------~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
.++.++..++.++..++.++..+ ...+..+...++.++.++..++.+|..+..
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433 234557888999999999999999986544
No 129
>PF13514 AAA_27: AAA domain
Probab=94.03 E-value=20 Score=44.14 Aligned_cols=48 Identities=19% Similarity=0.451 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 004063 546 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 593 (776)
Q Consensus 546 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~ 593 (776)
..+.++.++...+++.+..+...++.+.++...++.+++.+...|.++
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 499 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVP 499 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 568888888888999999999999999999999999999988888775
No 130
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.00 E-value=0.015 Score=68.95 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 452 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
.|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|.........|..+...+.+++..++
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le 432 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE 432 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35555555555555555666666666666666666666777778888888888888887777777777777777777665
Q ss_pred hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 532 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 532 S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
-..-.+..++..+..-.+...+.+..+++.+-.|...++-|+
T Consensus 433 re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~ 474 (859)
T PF01576_consen 433 RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQ 474 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 554444555555444444433333333333333333333333
No 131
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=93.94 E-value=7.8 Score=39.15 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQR------------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 505 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~------------~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 505 (776)
++..+...-..-++.+|..+..+.+.++.+- .....+..++++++.++......++..+.-|+.+-.+
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke 141 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE 141 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666656666667777777777666332 2233344455555555566666666666666666555
Q ss_pred hhHHHHHH
Q 004063 506 CNAADERA 513 (776)
Q Consensus 506 ~n~A~ERa 513 (776)
...|....
T Consensus 142 ~~~a~~k~ 149 (251)
T cd07653 142 AEKAKQKY 149 (251)
T ss_pred HHHHHHHH
Confidence 55555443
No 132
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.94 E-value=5.7 Score=37.47 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=22.1
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 551 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 551 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
...+-..+.++...+..-++-|.+.=++|+..|-
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555667777777788888887765
No 133
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.84 E-value=1.9 Score=45.47 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 004063 566 QSTIEALQEEKKMMQSKLRK----ASGSGKS 592 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~----asa~gKa 592 (776)
+..+.+++.+++.++..|.+ ++-.|.+
T Consensus 189 ~a~~~~~~a~l~~a~~~l~~~~I~AP~dG~V 219 (346)
T PRK10476 189 VAQRAAREAALAIAELHLEDTTVRAPFDGRV 219 (346)
T ss_pred HHHHHHHHHHHHHHHHHhhcCEEECCCCcEE
Confidence 34455556666666666653 4555554
No 134
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.79 E-value=13 Score=46.81 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 004063 680 KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 721 (776)
Q Consensus 680 ReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq 721 (776)
|+||...|..+-+.+++|+ ||+.+++...|+||...++
T Consensus 1695 ~~eA~~Ll~~a~~kl~~l~----dLe~~y~~~~~~L~~~~ae 1732 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLK----DLELEYLRNEQALEDKAAE 1732 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHH
Confidence 3444555555555555554 5667777777777776554
No 135
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.69 E-value=4.8 Score=41.92 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 004063 564 DFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR~ 585 (776)
.++..+...|+..+....+|..
T Consensus 107 ~lq~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 107 ELQEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445544444555544
No 136
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=15 Score=44.92 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 004063 668 NINALISELALEKEELVQALSSE----------LAQSSKLKDLNNELSRKLEHQTQRLELLTAQNM 723 (776)
Q Consensus 668 sInaLisELa~EReravsaLa~e----------sr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m 723 (776)
-.+..+..|.-||..+=.-|... .+.+..+...+..+.+.|+++---|+-.+....
T Consensus 497 E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~ 562 (1118)
T KOG1029|consen 497 ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKL 562 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554443321 233344444455555566666655555555443
No 137
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.63 E-value=4.1 Score=48.96 Aligned_cols=111 Identities=23% Similarity=0.238 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 504 (776)
Q Consensus 425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 504 (776)
+.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+=-++
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~ 176 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR 176 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444445555555666665555555666666666666677777777777777777788888888888888888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
.+..|.-|=..=-.-|..||.+|.|||..-=
T Consensus 177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 177 AAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887766666778899999999998753
No 138
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.62 E-value=4.6 Score=38.36 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=29.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
..++...+=..|-+| ....++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus 29 ~~~~~~~vin~i~~L-------l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 29 SEDNDVRVINCIYDL-------LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred ccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566554 334444555555555555555444444444444444444444444
No 139
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=11 Score=45.03 Aligned_cols=146 Identities=20% Similarity=0.210 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 488 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ 488 (776)
+.-.|-|++.+++++..+=.| ++.-... --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus 401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek 480 (698)
T KOG0978|consen 401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK 480 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777777776555544 2222222 1112222233333333345666777777777777777777
Q ss_pred HHHhhhhHHHHHHHHHhhhHHHH-------HHHHHHHH-------HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063 489 LVELESFRNEYANVRLECNAADE-------RAKILASE-------VIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 554 (776)
Q Consensus 489 ~~~le~l~aErDaAq~E~n~A~E-------RaK~LAaE-------VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q 554 (776)
.-+.=.++.|++.+.+..+...+ +...|..- +..||++...+-+..=++.+++..+..-+..+.+.
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~ 560 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK 560 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777888777776655543 33333333 33444444444444444444444443333333333
Q ss_pred HHhHHHhhhhHH
Q 004063 555 ISSLEKERQDFQ 566 (776)
Q Consensus 555 ~ssi~kER~~l~ 566 (776)
..-+......|+
T Consensus 561 ~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 561 AQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 140
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.58 E-value=7.3 Score=45.80 Aligned_cols=94 Identities=23% Similarity=0.316 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063 423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 502 (776)
Q Consensus 423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 502 (776)
-.|+.-|+.|-.|+-.|..-|+.+.+ +|+.|..-..+|...+.+|.+.+++++.+..-+..-|+.+..++..
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t- 154 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKAT- 154 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH-
Confidence 46777777777777777766665444 4555555556888889999999999998877777777777777665
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 503 RLECNAADERAKILASEVIGLEEKA 527 (776)
Q Consensus 503 q~E~n~A~ERaK~LAaEVV~LEek~ 527 (776)
+..|..+++.|-..+.+|++..
T Consensus 155 ---~SRAlsQN~eLK~QL~Elq~~F 176 (617)
T PF15070_consen 155 ---ASRALSQNRELKEQLAELQDAF 176 (617)
T ss_pred ---HHHHHHhHHHHHHHHHHHHHHH
Confidence 3557888888888888888743
No 141
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.50 E-value=1.3 Score=54.50 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRSNEL-------KLER 539 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL-------KleK 539 (776)
-.++.+-.++|+|.+++.|-+-..--+.+|=--.+. |.++..++.+.|.-|+..+++++.+++..-. .+.+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 578889999999999999888777666554333233 6788899999999999999999888877666 4455
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 004063 540 QLENSQSEISSYKKKISSLEKERQDFQ 566 (776)
Q Consensus 540 ElE~l~~Er~S~~~q~ssi~kER~~l~ 566 (776)
+++.++..+.....++....+|=++++
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444433333
No 142
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=6.4 Score=47.82 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHhhhHHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV---RLECNAADERAKI 515 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA---q~E~n~A~ERaK~ 515 (776)
+.-.++.-+.....|--||+.|-..|-++-+...+|+++..-|+.++..-....-.+..++++. --+.++|...+|.
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~ 748 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKK 748 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHH
Confidence 3334444455677788888888888888888888888888877777652111111121212211 1244556666666
Q ss_pred HHHHHHHHHHHH
Q 004063 516 LASEVIGLEEKA 527 (776)
Q Consensus 516 LAaEVV~LEek~ 527 (776)
|-.+-..|++++
T Consensus 749 l~~~q~~l~~~L 760 (970)
T KOG0946|consen 749 LENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHHHH
Confidence 666666666666
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.42 E-value=20 Score=42.03 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=39.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
.......-|.+.+..+++++.....+++.|+.+..-.-. +.......++..|+.++..+|.+...++..++.++
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------NNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666666665433211 11112225666666666666665555555544444
Q ss_pred H
Q 004063 546 S 546 (776)
Q Consensus 546 ~ 546 (776)
.
T Consensus 265 ~ 265 (754)
T TIGR01005 265 K 265 (754)
T ss_pred H
Confidence 3
No 144
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.32 E-value=15 Score=42.32 Aligned_cols=118 Identities=18% Similarity=0.325 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
+..-|...++.+..|..|-+.|..+|- .-...+.++..+++.++..+..-...++.=..=|-..+-+..+..++...
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666652 12234445555555555555444444444455566666666777777788
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
+..+...+-+.+..||..|.++++.+..++.++..+++.++
T Consensus 391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888877777776
No 145
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.28 E-value=9.7 Score=38.02 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAE 456 (776)
Q Consensus 423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E 456 (776)
..|+|+|.||-..--.+.+++.+.......|..+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~ 59 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERK 59 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888777777777776666555443
No 146
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.28 E-value=20 Score=41.65 Aligned_cols=72 Identities=26% Similarity=0.273 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHhHhhhhHHH
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----------ILASEVIGLEEKALRLRSNELKLERQ 540 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK-----------~LAaEVV~LEek~lqLRS~eLKleKE 540 (776)
..+..+++.|+.++.......+.+..++.+.+.++..|..+.. .++.|...|+.++.+++...-+.+++
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433 34445555555555555544444444
Q ss_pred hhh
Q 004063 541 LEN 543 (776)
Q Consensus 541 lE~ 543 (776)
+.+
T Consensus 285 l~~ 287 (650)
T TIGR03185 285 LRE 287 (650)
T ss_pred HHH
Confidence 443
No 147
>PRK01156 chromosome segregation protein; Provisional
Probab=93.26 E-value=21 Score=42.56 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004063 420 EDFAALEQHIEDLTQEKF 437 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKf 437 (776)
.+...|..-|+++..++-
T Consensus 483 ~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 483 EKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544443
No 148
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=93.03 E-value=2.6 Score=49.38 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
+.+++-+....+.-|.++++++++++.....+++.|+.+.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444555666666666666666666666666654
No 149
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.01 E-value=3.5 Score=39.38 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 004063 466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 513 (776)
Q Consensus 466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERa 513 (776)
-....|+.|+..+.+++-|+.+-...++.+..+++.+..|....+.++
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999988888888888888888666666555554
No 150
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=92.79 E-value=14 Score=42.08 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004063 420 EDFAALEQHIEDLTQ-EKFALQRSLEASRA 448 (776)
Q Consensus 420 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~ 448 (776)
.++..|++-|.+|+. ++-.++++|+.+.+
T Consensus 258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 258 ERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776666665 45577788877764
No 151
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.75 E-value=13 Score=37.91 Aligned_cols=88 Identities=18% Similarity=0.313 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Q 004063 432 LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 511 (776)
Q Consensus 432 LT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~E 511 (776)
|-+|--.+.+-.++....+..+..||..|+.---.....+.+|+.++..++.+ +.-..+++........
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-----------K~~L~~~k~rl~~~ek 100 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-----------KQSLQNLKARLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 33333333344444555666666666666655544444455555444444332 3334445555555666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004063 512 RAKILASEVIGLEEKALRL 530 (776)
Q Consensus 512 RaK~LAaEVV~LEek~lqL 530 (776)
..+.|.||-..|+.++.++
T Consensus 101 ~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 152
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.73 E-value=29 Score=42.03 Aligned_cols=107 Identities=24% Similarity=0.279 Sum_probs=64.9
Q ss_pred chhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhH----HHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFA---LQRSLEASRALSESLAAENSS----LTDSYNQQRSVVNQLKSEMEKLQEE-IKVQL 489 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfa---LqR~L~~s~~l~EsLa~ENsa----Lt~~yNqQ~~~v~qLk~~mE~Lq~E-i~aQ~ 489 (776)
+++-+++|+..=+.|..+-++ ..+-|-..-+-+++|...|-. |..--|....++ .=|.+||++++| |....
T Consensus 451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il-~~Kee~Ek~~~E~I~k~~ 529 (961)
T KOG4673|consen 451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSIL-RDKEETEKLLQETIEKHQ 529 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 678899999888888877664 344555555556665554442 222333333322 235667766555 55566
Q ss_pred HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004063 490 VELESFRNEYANVRLECNAADERAKILASEVIGLEE 525 (776)
Q Consensus 490 ~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEe 525 (776)
+.+...+.+|.+.|-...+-.+|+..+++=..++-.
T Consensus 530 ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 530 AELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 667777777777666666666666666666555544
No 153
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=92.70 E-value=0.73 Score=39.60 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHH---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 480 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 480 ~Lq~Ei~aQ~~~---le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
-|+.||+|.... |..+++..-++...+.+|..|++.|..||..|++++-++|+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677766554 44568888889999999999999999999999999988876
No 154
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.69 E-value=7.2 Score=48.26 Aligned_cols=86 Identities=24% Similarity=0.296 Sum_probs=65.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
+-+.-...++.+-++.|..|-.-||+++..+|..- |-..+..||-.|.+++--+..+|+-.++-++.|++|-.-|
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrars-----e~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS-----EGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33445566778888899999999999998876554 2233445566677888888899999999999999999988
Q ss_pred HHHHHhhccCC
Q 004063 580 QSKLRKASGSG 590 (776)
Q Consensus 580 qSKLR~asa~g 590 (776)
|..-+++.++=
T Consensus 335 q~q~eqL~~~~ 345 (1195)
T KOG4643|consen 335 QVQKEQLDGQM 345 (1195)
T ss_pred HHHHHHhhhhh
Confidence 88877655543
No 155
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.67 E-value=4.4 Score=41.89 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHh----hccCCCc
Q 004063 569 IEALQEEKKMMQSKLRK----ASGSGKS 592 (776)
Q Consensus 569 IdaLQEEKklLqSKLR~----asa~gKa 592 (776)
+..++.+.+.++..|.+ ++-.|.+
T Consensus 188 i~~~~~~l~~a~~~l~~~~I~AP~~G~V 215 (334)
T TIGR00998 188 VQEAKERLKTAWLALKRTVIRAPFDGYV 215 (334)
T ss_pred HHHHHHHHHHHHHHhhCcEEEcCCCcEE
Confidence 45555556666666653 5566654
No 156
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.67 E-value=9.5 Score=36.27 Aligned_cols=59 Identities=19% Similarity=0.356 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
..|...+.+++.++......++.++...+.++.++..+.++-+.|..++..++..+..+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555555555555555555554444444
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.65 E-value=6.6 Score=46.83 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 449 LSESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 527 (776)
Q Consensus 449 l~EsLa~ENsaLt~~y-NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~ 527 (776)
.-+-|..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|++..+....+..||-+..-.--..|+.|+
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555 445556677888888888888888888888888777766555444454444444444444444
Q ss_pred HH
Q 004063 528 LR 529 (776)
Q Consensus 528 lq 529 (776)
.+
T Consensus 617 ~~ 618 (717)
T PF10168_consen 617 DR 618 (717)
T ss_pred HH
Confidence 43
No 158
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.61 E-value=12 Score=40.87 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 560 KERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 560 kER~~l~stIdaLQEEKklLqSKLR 584 (776)
.+...+...+..++.+...++..|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777774
No 159
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.57 E-value=3.5 Score=46.71 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 550 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S 550 (776)
..+++.++++|..+++-+..+.+.+.++.+.-+.+..+...-......|.-.|+++..+++-..+.++-.. ..
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~-------~~ 80 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE-------KT 80 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 34555666666666666666666666666666666666666666667777777777777776666532222 22
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 551 YKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 551 ~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
...++.-++.+|-+++.+|-.|+|.+
T Consensus 81 ~t~~~~~~en~~~r~~~eir~~~~q~ 106 (459)
T KOG0288|consen 81 LTVDVLIAENLRIRSLNEIRELREQK 106 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23333444445555555555555443
No 160
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=92.35 E-value=6.6 Score=33.73 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 464 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-----NEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-----aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
+.+....+.+.+..+++|+..+......+.... .++-+...-+.....+...+..++..++.++.+.|
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r 79 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333333333222 33333333333333333334444444444433333
No 161
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=92.34 E-value=15 Score=38.42 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 525 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEe 525 (776)
..+++|-..-..+++.+|.-+| .|.+||..++.++.. ++..+.+...|+..+..|..+--..|.||-.|=.
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~-------l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDE-------LEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666778888898886 455555555555555 5555555555555555566666667788877644
Q ss_pred H
Q 004063 526 K 526 (776)
Q Consensus 526 k 526 (776)
|
T Consensus 82 R 82 (207)
T PF05546_consen 82 R 82 (207)
T ss_pred c
Confidence 3
No 162
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.31 E-value=21 Score=40.72 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=17.4
Q ss_pred cccccccCcccchHHHHHHHHHHh
Q 004063 738 THDHTAYADEGDEVVERVLGWIMK 761 (776)
Q Consensus 738 ~~~~~~~~degdevvervlgwimk 761 (776)
+.-++.-.-.|-|-|-||++|--+
T Consensus 354 ~~~~t~q~~~Greyv~rv~sagny 377 (499)
T COG4372 354 RRPATRQSPSGREYVTRVTSAGNY 377 (499)
T ss_pred hhhhhccCCCCCCeeEeecccCcc
Confidence 444556667888988999998544
No 163
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.27 E-value=36 Score=42.78 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063 475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 554 (776)
Q Consensus 475 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q 554 (776)
.+++.++..+|..+.-..+....|...-+.+...+......+-.++-..|+++.. |-.-+|..-+....+..+....+.
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~ 311 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKD 311 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhh
Confidence 3344444444444443333333333333333334444444455555566666665 555555555555555666666666
Q ss_pred HHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063 555 ISSLEKERQDFQSTIEALQEEKKMMQ 580 (776)
Q Consensus 555 ~ssi~kER~~l~stIdaLQEEKklLq 580 (776)
+..++++-+...++|++|+.+++.+.
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~ 337 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVE 337 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66666666666667777766665443
No 164
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.26 E-value=13 Score=46.44 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 510 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 510 ~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
..|...|++|...|+.++..++...+-..+-.+=++..++=+.+++..++.+=+.++..|+.
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777776665555444444444444555555555555554555554444
No 165
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.15 E-value=0.042 Score=65.32 Aligned_cols=114 Identities=23% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 551 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~ 551 (776)
..+...+.+++..|+--...++-....++.++..+..+..|++.|..|+..|+..+..+-...=.++.++..+.+++..+
T Consensus 570 ~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l 649 (859)
T PF01576_consen 570 EEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNEL 649 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666677666666666666666666666666777777888888888888877776666667778888888888888
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 552 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 552 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
..+..++..++..|...|..|+.++...++-++.
T Consensus 650 ~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~ 683 (859)
T PF01576_consen 650 TSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA 683 (859)
T ss_dssp ----------------------------------
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877888888888777777776663
No 166
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.13 E-value=11 Score=43.23 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
|.+.|+-|+..|-+.+.+||+..=|+..+..+..+.++.++-++.-.++.|-.+-..+-+-|+||
T Consensus 305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666666666666666666666666666555555555444444444444
No 167
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=92.04 E-value=15 Score=38.01 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063 437 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 504 (776)
Q Consensus 437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 504 (776)
..|..++..-..-+|.+|.-+..|...-.. |...-..++..+++++.-+......+...+..|..+-.
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k 137 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR 137 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555556666666555554432 22233445555666666666666666667777777766
Q ss_pred hhhHHHHHHH--------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063 505 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 564 (776)
Q Consensus 505 E~n~A~ERaK--------------------~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 564 (776)
|...|..+.. .-..|..-|+.++.+.+....|++.+.......+..++.++. ..
T Consensus 138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~ 211 (239)
T cd07658 138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA 211 (239)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 7666665442 233566777777777777777777777776666666666665 34
Q ss_pred HHHHHHHHH
Q 004063 565 FQSTIEALQ 573 (776)
Q Consensus 565 l~stIdaLQ 573 (776)
+...++.+|
T Consensus 212 ~~~~~~~~Q 220 (239)
T cd07658 212 LRKGLNQYE 220 (239)
T ss_pred HHHHHHHHH
Confidence 566777777
No 168
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=92.02 E-value=8.7 Score=39.24 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=55.3
Q ss_pred HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 454 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 454 a~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
--+|=+|+.+|-.. ..-..+|...+++|+.+++.+.-.++.+-.+|-..|.++ -...+.|...-..+-.+..++-
T Consensus 119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~~v~kn~eie 195 (221)
T PF05700_consen 119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA---GEELRYLEQRWKELVSKNLEIE 195 (221)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777433 335578888899999999999999999988888877653 3334444444444444444444
Q ss_pred hHhhhhHHHhhhhH
Q 004063 532 SNELKLERQLENSQ 545 (776)
Q Consensus 532 S~eLKleKElE~l~ 545 (776)
.-+.+++.|+..++
T Consensus 196 ~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 196 VACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 169
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.97 E-value=18 Score=43.44 Aligned_cols=27 Identities=30% Similarity=0.656 Sum_probs=21.6
Q ss_pred HHhhhhHHHHHHHHHHHH-------HHHHHHHHh
Q 004063 559 EKERQDFQSTIEALQEEK-------KMMQSKLRK 585 (776)
Q Consensus 559 ~kER~~l~stIdaLQEEK-------klLqSKLR~ 585 (776)
+.||..|..+|..|||++ .+||+|+..
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999998 566667664
No 170
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=91.95 E-value=18 Score=37.76 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH-----HHHHHHHH
Q 004063 447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-----KILASEVI 521 (776)
Q Consensus 447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERa-----K~LAaEVV 521 (776)
..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+. -....|+.
T Consensus 78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~ 157 (240)
T cd07672 78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence 3466666666554555557777788888999999999988899888888888887666666665442 12256888
Q ss_pred HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 004063 522 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK 560 (776)
Q Consensus 522 ~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k 560 (776)
-++.++.+.+..--|++++-+....+...++..+..-|+
T Consensus 158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~ 196 (240)
T cd07672 158 KLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV 196 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888888888888888888888887775444
No 171
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.86 E-value=28 Score=42.10 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=17.5
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKS 476 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~ 476 (776)
+.|..+.+++.+++......+.++.+
T Consensus 228 ~~l~~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 228 EELEQEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777776666666666
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.82 E-value=7.4 Score=44.63 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=16.4
Q ss_pred cCCCCCCcCCcccccccccCCCCCCCCc
Q 004063 149 YDSSNSSKSGFQGIEESQSKGNDSFPKV 176 (776)
Q Consensus 149 ~~s~~~s~s~~~~~~~~Qs~~~~sslK~ 176 (776)
|-|.|++..-=||+.-+=.+-.-+++|.
T Consensus 43 ~~sgnp~ve~t~GiiHLyk~n~~~s~~~ 70 (493)
T KOG0804|consen 43 YSSGNPSVEETHGIIHLYKKNSHSSLKN 70 (493)
T ss_pred ccCCCCceeeeceeEEEEecCccccccc
Confidence 4455666666677666655555555543
No 173
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.81 E-value=22 Score=38.66 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=10.2
Q ss_pred hhhhHHHHHHHHHHHHH
Q 004063 561 ERQDFQSTIEALQEEKK 577 (776)
Q Consensus 561 ER~~l~stIdaLQEEKk 577 (776)
||..+.-.+.+|.+|-+
T Consensus 158 Eke~llesvqRLkdEar 174 (333)
T KOG1853|consen 158 EKEVLLESVQRLKDEAR 174 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555566666666643
No 174
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.71 E-value=23 Score=38.68 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=17.5
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
++..++.+++-|-.++--+.+..++++..+..+|.+.+-+..
T Consensus 201 ~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 201 EADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443444444444444444444444433
No 175
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.65 E-value=1.6 Score=38.07 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
.|.+|+..|.+++.++-..-=+.+-++..+..|++++.+++..+-.+=+.|..++++|+.|.+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888887775555556667777888888888888877666677777777777665543
No 176
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.57 E-value=15 Score=36.16 Aligned_cols=80 Identities=25% Similarity=0.351 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 551 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~ 551 (776)
.-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+..-.+..+.-.|+.++--+|+.--.+.++++..+..++.+
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555666666666666666666666666666666666555555555554444433
No 177
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=91.52 E-value=8.3 Score=33.13 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
..+.....-+..|...|..+...++.+..++..++..+.+|.-+.|
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444443333
No 178
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.50 E-value=15 Score=41.82 Aligned_cols=85 Identities=26% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH-------hHHHHHHHHHhhh----hccc-------cCCCC
Q 004063 673 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQT-------QRLELLTAQNMAN----ENIS-------FRQPD 734 (776)
Q Consensus 673 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qt-------QRLELltsq~m~~----e~~~-------a~~~d 734 (776)
+.+-+.|+..++.+|+..- .... ..|+..+|-.+| ..||.+++.+-+- |.+. +....
T Consensus 364 ~~~ke~E~q~lr~~l~~~~----~~s~-~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~ 438 (511)
T PF09787_consen 364 LKEKESEIQKLRNQLSARA----SSSS-WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRP 438 (511)
T ss_pred HHHHHHHHHHHHHHHHHHh----ccCC-cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCC
Confidence 3344555555555555533 1112 357777777776 4456666554432 1111 11222
Q ss_pred ccccccccccCcccchHHHHHHHHHHhhcCCC
Q 004063 735 SASTHDHTAYADEGDEVVERVLGWIMKLFPGG 766 (776)
Q Consensus 735 ~~~~~~~~~~~degdevvervlgwimklfpgg 766 (776)
++ -...|.+.+|.+-.| +-+.|+..|+.
T Consensus 439 ~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d 466 (511)
T PF09787_consen 439 SS---ILMKYSNSEDDAESR-VPLLMKDSPHD 466 (511)
T ss_pred ch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence 22 234566677777777 77777777665
No 179
>PRK11281 hypothetical protein; Provisional
Probab=91.44 E-value=49 Score=41.81 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+.........+.|+-+...++.+|.+.+.||..+-
T Consensus 217 ~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in 251 (1113)
T PRK11281 217 GNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666677777777777777777665
No 180
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.42 E-value=1.7 Score=39.37 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
||.||.++=-.--=++-+++.++++-..+..++..+..-|..|..+.+.|++|...-|.|||.+.+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444432222223444444555555556666667777888899999999999999999996543
No 181
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.22 E-value=5 Score=39.99 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH-HHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ-SEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~-~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
++.+.|++..+.|+.+-......+..||..|+.+..+.|..-....+...++. .++..++.+..-++-+=.-++..-.-
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999999888877788877754 34555555555444444444444445
Q ss_pred HHHHHHHHHHHHHh
Q 004063 572 LQEEKKMMQSKLRK 585 (776)
Q Consensus 572 LQEEKklLqSKLR~ 585 (776)
|+.....|+-+|++
T Consensus 103 Lr~rRD~LErrl~~ 116 (159)
T PF05384_consen 103 LRERRDELERRLRN 116 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.09 E-value=2.8 Score=42.99 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=10.7
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHH
Q 004063 552 KKKISSLEKERQDFQSTIEALQEE 575 (776)
Q Consensus 552 ~~q~ssi~kER~~l~stIdaLQEE 575 (776)
..++..+.++.+.+...++++|+.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444444455555543
No 183
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=91.09 E-value=19 Score=36.56 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
....+.+..|..++..+...+.+|+...-++++.++.++.....+..++.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555444444443
No 184
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=91.06 E-value=8.8 Score=38.19 Aligned_cols=111 Identities=25% Similarity=0.348 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 527 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~ 527 (776)
.||-.+..|-+.|.++|=.- +|..|==.+ -.+||.| |++. .++.....|+..|.+..
T Consensus 3 ~lA~~Ig~EfE~lId~~G~e--~v~~LmP~V----------V~vLE~L----e~~~-------~~n~~~~~e~~~L~~d~ 59 (158)
T PF09744_consen 3 DLASSIGKEFERLIDRYGEE--AVKGLMPKV----------VRVLELL----ESLA-------SRNQEHEVELELLREDN 59 (158)
T ss_pred HHHHHHHHHHHHHHHHhChh--HHHHHHHHH----------HHHHHHH----HHHH-------HhhhhhhhHHHHHHHHH
Confidence 57788888888888888542 333332222 1122222 2211 12233334555555555
Q ss_pred HHHHhHhhhhHHHhhhhHHHHHHHHHHHH----hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 528 LRLRSNELKLERQLENSQSEISSYKKKIS----SLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 528 lqLRS~eLKleKElE~l~~Er~S~~~q~s----si~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
.+|..+.- .+|+ .+..+..++. ....|+.++..-|+.||++.+.|+.++++.+.
T Consensus 60 e~L~~q~~-~ek~------~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 60 EQLETQYE-REKE------LRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55433221 1222 2233333333 56688889999999999999999999997544
No 185
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.05 E-value=5.8 Score=47.66 Aligned_cols=38 Identities=34% Similarity=0.384 Sum_probs=20.9
Q ss_pred CCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHH
Q 004063 638 SGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEK 680 (776)
Q Consensus 638 s~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~ER 680 (776)
+.-++.|+.|.|+ .-.+-.|+ --++-|++=|..+.+|+
T Consensus 350 s~~dl~~psG~~a-~~lAmmlq----~~ldain~eirliqeEk 387 (916)
T KOG0249|consen 350 SSADLLSPSGASA-QTLAMMLQ----EQLDAINKEIRLIQEEK 387 (916)
T ss_pred ccccccCcchhhh-hhhhhhcc----cCCCcccchhhHhHhhh
Confidence 3446677889882 11111333 12456777676766666
No 186
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.94 E-value=22 Score=38.54 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=12.6
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 004063 409 NQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 440 (776)
Q Consensus 409 ~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq 440 (776)
..++.++.....++. .+-+.+|..+....+
T Consensus 199 ~~~~i~~~~~~~~~~--~~~l~~l~~~l~~~~ 228 (444)
T TIGR03017 199 QEKGIVSSDERLDVE--RARLNELSAQLVAAQ 228 (444)
T ss_pred HHcCCcccCcccchH--HHHHHHHHHHHHHHH
Confidence 345555554433332 133444544444433
No 187
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.91 E-value=17 Score=35.55 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063 428 HIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 506 (776)
Q Consensus 428 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 506 (776)
-|+++--+-..|+..+.+.+.-..+.-+=.+.|. -+|=+..-...+|.+.+|. --.+|..++.=+.+..+-+
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeE-------Rn~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEE-------RNKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444333333333 3444443344444444433 3344555555566666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
++-.|....+..|...+..++....-..-+++.++..++.+++.++++...+
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666666666666666666666666666666665543
No 188
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.85 E-value=2.7 Score=43.13 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 004063 474 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 553 (776)
Q Consensus 474 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~ 553 (776)
++..+.+|++|++.=..+|+.+..++ +.+...|+..+..++..+.+|+.+-=++.++++.++.|++.++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTW----------NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666544444444333332 24555555555555555555444444444555555555555444
Q ss_pred HHH
Q 004063 554 KIS 556 (776)
Q Consensus 554 q~s 556 (776)
++.
T Consensus 161 ~~~ 163 (206)
T PRK10884 161 QLD 163 (206)
T ss_pred HHH
Confidence 444
No 189
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.78 E-value=14 Score=40.11 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 546 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~ 546 (776)
-+..|+..|..+++-++--++.+++|-.|..+..- +...|--.+..||+.+.+++-.-.+.-++++.+++
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~y-------qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~ 147 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMY-------QVDLLKDKLEELEETLAQLQREYREKIRELERQKR 147 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888776433 44556666677777776665544444444444443
No 190
>PF13166 AAA_13: AAA domain
Probab=90.78 E-value=37 Score=39.21 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=20.9
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 538 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
++++..+..++....+++..++..-......++.+-++++.+
T Consensus 430 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 430 EKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444455555555444444444445555555555555
No 191
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.75 E-value=21 Score=44.93 Aligned_cols=44 Identities=7% Similarity=0.041 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 541 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 541 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
++.++.|..+.........+.|+-+...++.+|.+.+.||..+-
T Consensus 189 ~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 189 VDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666677777777777777666666553
No 192
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.70 E-value=51 Score=40.80 Aligned_cols=167 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------------HHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------------NQLKSEMEKL 481 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------------~qLk~~mE~L 481 (776)
...+..+.+.+..+..+.-.+...+.+.+...+.+......+.+.+-+....+ .++..++..+
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 615 (1047)
T PRK10246 536 EKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLL 615 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH----------------------------HHHHHH---HHHHHHHHHHHH
Q 004063 482 QEEIKVQLVELESFRNEYANVRLECNAADER----------------------------AKILAS---EVIGLEEKALRL 530 (776)
Q Consensus 482 q~Ei~aQ~~~le~l~aErDaAq~E~n~A~ER----------------------------aK~LAa---EVV~LEek~lqL 530 (776)
++ +......++.+..+....+..+..+..+ ...+.. +...+++++..+
T Consensus 616 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1047)
T PRK10246 616 SQ-RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQL 694 (1047)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 531 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 531 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
+...-.+.+..+.++.........+..+......+...+..+.+....++.++..+
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 750 (1047)
T PRK10246 695 TPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKA 750 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 193
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.69 E-value=28 Score=37.79 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063 467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
......-|.++++++++++.....++..|+.+..-
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33456667777777777777777778888776543
No 194
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.50 E-value=25 Score=41.19 Aligned_cols=12 Identities=0% Similarity=-0.044 Sum_probs=7.0
Q ss_pred HHhhHHHHHHHH
Q 004063 665 MIHNINALISEL 676 (776)
Q Consensus 665 ~IdsInaLisEL 676 (776)
..|.++.|...|
T Consensus 526 ~~Ea~r~lr~~l 537 (754)
T TIGR01005 526 AEEELRVKEEAV 537 (754)
T ss_pred chHHHHHHHHHH
Confidence 456666665555
No 195
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.44 E-value=32 Score=37.92 Aligned_cols=150 Identities=20% Similarity=0.358 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 423 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 491 (776)
Q Consensus 423 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~ 491 (776)
||++.|=+-.|.+ --|.++++++++ =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus 102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 345666666665 3446778888888888888888889999988888888888888
Q ss_pred hhhhHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063 492 LESFRNEYANVRLECNAA-------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 564 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A-------~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 564 (776)
|+.+..+..-++...-+. .+....--.--..+|+|+-++-|.-+=++.+|+.+..+.+.-++-+.-| -++
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini---Q~~ 257 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI---QDQ 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence 888776666655444332 2233333345577899999999999999999999998877766666655 566
Q ss_pred HHHHHHHHHHHH
Q 004063 565 FQSTIEALQEEK 576 (776)
Q Consensus 565 l~stIdaLQEEK 576 (776)
++.+|..||-|.
T Consensus 258 f~d~~~~L~ae~ 269 (305)
T PF14915_consen 258 FQDIVKKLQAES 269 (305)
T ss_pred HHHHHHHHHHHH
Confidence 778888888443
No 196
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.40 E-value=5.4 Score=47.91 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 574 (776)
+.+|...|++...--.|-++.|...|.+-..-.++.|+.-| .+.+.|..|.++++++|..+.++++.+..-+++|.-
T Consensus 175 ~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl---e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 175 LNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL---EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRG 251 (916)
T ss_pred HHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455555554444455555555555533333344444333 233456666666666666666666666666666665
Q ss_pred HHHHHH
Q 004063 575 EKKMMQ 580 (776)
Q Consensus 575 EKklLq 580 (776)
|.+.|.
T Consensus 252 e~~qL~ 257 (916)
T KOG0249|consen 252 ELDQLR 257 (916)
T ss_pred HHHHHH
Confidence 555444
No 197
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.37 E-value=57 Score=40.78 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=27.7
Q ss_pred ccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 650 ALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQS 694 (776)
Q Consensus 650 af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~ 694 (776)
.++++ +++-+|...-++-.+.|=..|.+-..++.-+|+.+...+
T Consensus 459 nlEek-VklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 459 NLEEK-VKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 666666666666666666666666666777777666544
No 198
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.37 E-value=17 Score=43.31 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=66.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
....|....++.+.|+.++..|+.++..++-...++.++++....+..-. ...+...+..+.... +=+++.+.|+.
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N 307 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHN 307 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34445556666889999999999999999999999999888877665444 555556677777666 66788888888
Q ss_pred HHHhhccCCCc
Q 004063 582 KLRKASGSGKS 592 (776)
Q Consensus 582 KLR~asa~gKa 592 (776)
.+..+-++-++
T Consensus 308 ~i~eLkGnIRV 318 (670)
T KOG0239|consen 308 EILELKGNIRV 318 (670)
T ss_pred HHHHhhcCceE
Confidence 88888887776
No 199
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.28 E-value=30 Score=43.34 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 004063 561 ERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 561 ER~~l~stIdaLQEEKklLqSKL 583 (776)
|=+.++..+++|+-+|+.|.-+.
T Consensus 579 elkk~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 579 ELKKYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666553
No 200
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.25 E-value=4.3 Score=35.78 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
.....+.|.+....|+.|+..|.++-..|....-.++.+.++++.|+......+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888888888888887776655556666666655555554444
No 201
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=90.21 E-value=1.8 Score=38.20 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=47.2
Q ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004063 461 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK 526 (776)
Q Consensus 461 t~~yNqQ~~~v~qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErDaAq~E~n~A~ERaK~LAaEVV~LEek 526 (776)
.+..++--...+.+++++++ ++..++..+..+.-+ +.|||+.+..+..++++...|.+.|..||++
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444556666654 344555555555555 9999999999999999999999999999864
No 202
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=90.19 E-value=19 Score=37.51 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Q 004063 448 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 508 (776)
Q Consensus 448 ~l~EsLa~ENsa-Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~ 508 (776)
.+++.|.+++.. |..=...+...+..++..|+.++..++....++...+..|..+-.+...
T Consensus 78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~ 139 (233)
T cd07649 78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEG 139 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666633 3333344566778888888888888888888888887777665544444
No 203
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.11 E-value=7.5 Score=46.36 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=42.6
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 408 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 408 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
+.|++-|-..+.-=..+++.|+.-|..+|-.-+..|+..++--+.|.+.-+.|.+||-+-...-+.|...++++-+.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444344444444556666666666666666666666666666665555666666655555544554444444443
No 204
>PRK10698 phage shock protein PspA; Provisional
Probab=89.93 E-value=26 Score=36.17 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
-..+|.|.|.||-..--.+.+++++..+.-..+.. +|.+.... ++.++.. |. ++|..=..+.+
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er-------~~~~~~~~-------~~~~e~k--A~-~Al~~G~EdLA 87 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTR-------RIEQAEAQ-------QVEWQEK--AE-LALRKEKEDLA 87 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHH--HH-HHHHCCCHHHH
Confidence 45799999999999888887777765544433322 22222222 2222221 00 11111111111
Q ss_pred -HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 501 -NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 501 -aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
.|..+-..+.+++..|..+....+..+.+|+....+++..++.++..++.+..++..+
T Consensus 88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444456666777777777777777777777777777777777776666666654
No 205
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.86 E-value=4 Score=39.50 Aligned_cols=64 Identities=31% Similarity=0.386 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLRSN 533 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~--n~A~ERaK~LAaEVV~LEek~lqLRS~ 533 (776)
.+.++..++.+|++++......+..+.+|+.+..... .++......|..|+..|++++..||+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555566666666666666666666666666655554 566777778888888888888888863
No 206
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.84 E-value=51 Score=39.39 Aligned_cols=141 Identities=23% Similarity=0.278 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004063 446 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAADERAKILASEVIG 522 (776)
Q Consensus 446 s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---~aErDaAq~E~n~A~ERaK~LAaEVV~ 522 (776)
=+++-++|-.=|.+|++-=|+|.. |..|++.+.++.+.+.-..-....+ ..++..+-.+. .-.++...++..+..
T Consensus 123 ~~~lk~~lee~~~el~~~k~qq~~-v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~-~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 123 NEELKEELEEVNNELADLKTQQVT-VRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREA-GLKDEEQNLQEQLEE 200 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456777788888888877776654 4556666666655544333322222 12222222111 123455667888888
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHH----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 523 LEEKALRLRSNELKLERQLENSQSE----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~E----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
||+++..+-+..+...+++..++.- ...--.+|.+||.|=...+.-|..||+|...|...|..+..
T Consensus 201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999988877777788887765544 77778899999999999999999999999999888875443
No 207
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=89.84 E-value=30 Score=36.79 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENS 544 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK-------~LAaEVV~LEek~lqLRS~eLKleKElE~l 544 (776)
.++...++++|.-.....-.++.-+..|..+-.+...|..|.. ....|+.-+..++.+.+-.--+++.+-+..
T Consensus 115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~ 194 (258)
T cd07680 115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKV 194 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888887778876633 234667777777666655555555554444
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 545 QSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 545 ~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
..+++.+...|. ..+....|.+|
T Consensus 195 l~~ln~~~~~y~------~~m~~vfd~~Q 217 (258)
T cd07680 195 LDDVGKTTPQYM------ENMEQVFEQCQ 217 (258)
T ss_pred HHHHHHhhHHHH------HHHHHHHHHHH
Confidence 444444444444 24667888888
No 208
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.63 E-value=34 Score=37.07 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=121.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
..+.+++|.+-..|+-.|...++|.+...+.-++.|..|...+....| .....++.+|.|=+|++.|-- .++.
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~----k~~~~k~KLE~LCRELQk~Nk---~lke 92 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS----KAILAKSKLESLCRELQKQNK---KLKE 92 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 367899999999999999999999999999999999999999988887 445677777888777776653 3444
Q ss_pred HHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 498 EYANVRLECNAAD-ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 498 ErDaAq~E~n~A~-ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
|.-....+....+ +=...++.-+-....++-+-.....|+..+-+.++....++..+|..- =.++.+.+....-|.
T Consensus 93 E~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~ 169 (309)
T PF09728_consen 93 ESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEV 169 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHH
Confidence 4443333322222 223456666677777777777778888888888999999999999843 246777888888899
Q ss_pred HHHHHHHHhhcc
Q 004063 577 KMMQSKLRKASG 588 (776)
Q Consensus 577 klLqSKLR~asa 588 (776)
+++..||-++..
T Consensus 170 Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 170 QLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHHHHH
Confidence 999999986544
No 209
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.56 E-value=23 Score=38.29 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHH
Q 004063 458 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-------AKILASEVIGLEEKALRL 530 (776)
Q Consensus 458 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ER-------aK~LAaEVV~LEek~lqL 530 (776)
.+|..+|.+.-..+..++.++..++. ....+.-|+|.++.|.+.|..- .+.|+.+--.|.+++.++
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~K-------k~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQK-------KQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665555555555555555554 4455555555555555544432 344455555566666655
Q ss_pred HhHhhhhHHHhhh-hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063 531 RSNELKLERQLEN-SQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577 (776)
Q Consensus 531 RS~eLKleKElE~-l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 577 (776)
-..+-..++++.. +..-+..+..++..-...|..+....+.|.+..+
T Consensus 98 ~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK 145 (309)
T PF09728_consen 98 AREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLK 145 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 5555444555433 4444444444444444444444444444444444
No 210
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.48 E-value=64 Score=40.60 Aligned_cols=168 Identities=23% Similarity=0.337 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY 464 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~-----------------------------------L~~s~~l~EsLa~ENsaLt~~y 464 (776)
.+..-|+--+.-|-.||-.+++. |+.-..-.+.--.|-+++--+|
T Consensus 272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 46677777777777777666554 1111222333345666777788
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH---HHHHhhh----------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 465 NQQRSVVNQLKSEMEKLQEEIKV---QLVELES----------FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 465 NqQ~~~v~qLk~~mE~Lq~Ei~a---Q~~~le~----------l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
|.+...-+.++..+..|++.... -...-.+ ++.|+.......+.-.++-..|+.|...|+.+....
T Consensus 352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~- 430 (1200)
T KOG0964|consen 352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEK- 430 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence 88888888888888777763221 1111222 255555566667777777778888877777655432
Q ss_pred hHhh-hhHHHhh-------hhHHHHHHHHHHHHhHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 532 SNEL-KLERQLE-------NSQSEISSYKKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 532 S~eL-KleKElE-------~l~~Er~S~~~q~ssi~kER-------~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
-.++ +++..+. .+.++.-+..+++..+...| ..+++.|+++.+.+...+..||.+..
T Consensus 431 ~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 431 LEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 2222222 23233333333343333333 34677888888888999999986554
No 211
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.32 E-value=12 Score=43.80 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
-|-+.|.++++..+.|.+|-+.+...|==-.. .+-+.+.+++.|...+..=....+.=+-=|-.+|-.+..-.....
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~ 392 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALT 392 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888843222 233334444333333222222222222234445555566666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEI 548 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er 548 (776)
....+-+.+.+.++.||-.+++++-.+++++..+
T Consensus 393 ~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l 426 (570)
T COG4477 393 DIEDEQEKVQEHLTSLRKDELEARENLERLKSKL 426 (570)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777778888888888887766666655443
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.30 E-value=17 Score=41.79 Aligned_cols=73 Identities=21% Similarity=0.132 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 461 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 461 t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
+.+|++ ++++..+...+.+-.|...-..++..+.++..++-..+..-+.+.++++.|...++|.-.-|+.++.
T Consensus 341 ~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 341 MSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444 3333333333333333333233334444444555445555555555555555555444444444443
No 213
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.21 E-value=14 Score=39.12 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 004063 569 IEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 569 IdaLQEEKklLqSKLR~as 587 (776)
++.++.+.+.++..|.++.
T Consensus 185 ~~~~~a~~~~~~a~l~~a~ 203 (346)
T PRK10476 185 VDALVAQRAAREAALAIAE 203 (346)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3455556666666666543
No 214
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=89.11 E-value=31 Score=35.93 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 004063 564 DFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR~ 585 (776)
.....+..++...+.++.+|.+
T Consensus 183 ~~~~~~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 183 LAQAEVKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666663
No 215
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.94 E-value=19 Score=39.33 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 004063 567 STIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 567 stIdaLQEEKklLqSKLR~as 587 (776)
..+..++.+.+.++..|.++.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~ 247 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELE 247 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666433
No 216
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=88.92 E-value=28 Score=35.21 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 004063 432 LTQEKFALQRSLEA 445 (776)
Q Consensus 432 LT~EKfaLqR~L~~ 445 (776)
+=.|+-++.+.-++
T Consensus 27 f~keRa~iE~eYak 40 (251)
T cd07653 27 FVKERAAIEQEYAK 40 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555444433
No 217
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.91 E-value=63 Score=39.24 Aligned_cols=65 Identities=28% Similarity=0.330 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 520 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 520 VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
|.-|+.+|..||.+-=--.|-++.+..+-..+.+++.+-.+-=..+.--|++||+|.+-++.+..
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33455566666554333355566677777777777776666666677778888888877776554
No 218
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.86 E-value=50 Score=37.94 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 521 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 521 V~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
..+++|+..++.-.-|-..+++.+...+..+++++..+... ...++.|+++++.++.++.
T Consensus 304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~----~~~le~L~~el~~l~~~l~ 363 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS----DESLEALEEEVDKLEEELD 363 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHH
Confidence 34555555554433333345555555555555555544321 1234445555555555444
No 219
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=88.75 E-value=17 Score=39.04 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH----HHHhh
Q 004063 512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS----KLRKA 586 (776)
Q Consensus 512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS----KLR~a 586 (776)
..+.+..++..++..+..+.++|-.++-.+++-+.|.++.++.++++++-|=-...+.++|.+|++.+.. |.||.
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl 248 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNL 248 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456677888888888888888888888889999999999999999999999999999999999988764 55553
No 220
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.57 E-value=17 Score=34.73 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=60.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 004063 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF 495 (776)
Q Consensus 417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l 495 (776)
..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+--.. +. .+...-.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~ 89 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL 89 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4566789999999998887777766666667778888888888888888887777777777654211 11 2222234
Q ss_pred HHHHHHHHHhhh
Q 004063 496 RNEYANVRLECN 507 (776)
Q Consensus 496 ~aErDaAq~E~n 507 (776)
++|-|.|..|+-
T Consensus 90 k~~~dka~lel~ 101 (107)
T PF09304_consen 90 KAQKDKAILELK 101 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhhhhHHHHH
Confidence 666666666553
No 221
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=88.43 E-value=21 Score=33.82 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 527 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~ 527 (776)
...+.|-.+|..|.+.+=.....+.+++.++..+..+++.-.........+++.+...++-.. =...|...+..+|+++
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeS 112 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEES 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHH
Confidence 333444444444444433333333333333333333322222233333334444433333222 2345777888888888
Q ss_pred HHH
Q 004063 528 LRL 530 (776)
Q Consensus 528 lqL 530 (776)
-.+
T Consensus 113 e~l 115 (150)
T PF07200_consen 113 EEL 115 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.10 E-value=14 Score=37.93 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=45.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST 568 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st 568 (776)
+|...++-.++.+.|..|+..|+.++..|+...=++++.+.....++.+..+++..++.-|.+|.-.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666667777777777777777777777777766553
No 223
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=88.06 E-value=31 Score=35.79 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHH
Q 004063 420 EDFAALEQHIEDLTQ 434 (776)
Q Consensus 420 ~~faaLqqhIeDLT~ 434 (776)
.++..++..++.+..
T Consensus 80 ~~l~~a~a~l~~~~~ 94 (334)
T TIGR00998 80 LALAKAEANLAALVR 94 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 224
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=87.92 E-value=7.2 Score=40.83 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILA 517 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LA 517 (776)
+.||+.++.++..|..+.+...
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~a~ 165 (331)
T PRK03598 144 ANDLENARSSRDQAQATLKSAQ 165 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555444443
No 225
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.90 E-value=32 Score=41.49 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
|.|++...++....-.|-.|-+.|...-=+-+..+..+.-.+-+|+.+
T Consensus 485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq 532 (698)
T KOG0978|consen 485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ 532 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777776666666666655555544455555555555444444
No 226
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=87.81 E-value=35 Score=34.94 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
-+..|--.|.+|+..|+.++..++-..+-.-.--+=++..++-+..++..+..+.+.|+..|+...
T Consensus 147 l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 147 LSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777665444433332233455566666777777777777777776654
No 227
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.80 E-value=5.4 Score=35.95 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=39.9
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
||+|+.+.--.---++-+++.|+++-.++..+++.+..-|..|..+.+.|++|-..-|.|||..
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444332222234445555555555566666666667777788888888888888888843
No 228
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=87.72 E-value=35 Score=34.83 Aligned_cols=149 Identities=11% Similarity=0.156 Sum_probs=93.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
+..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-+++.=+-+......++.+
T Consensus 10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~ 89 (201)
T cd07622 10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG 89 (201)
T ss_pred CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567898888888888765444555555544444556677778888888777666666666555554444444333332
Q ss_pred ----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhH
Q 004063 496 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 565 (776)
Q Consensus 496 ----------~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l 565 (776)
--||...-..+..+..+-...+.+.+.+++.+.+.+.. ++++++..+.+.+.+..++
T Consensus 90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~---------- 156 (201)
T cd07622 90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKA---------- 156 (201)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------
Confidence 23455555555555556666777888888877777544 5666666666555555444
Q ss_pred HHHHHHHHHHHH
Q 004063 566 QSTIEALQEEKK 577 (776)
Q Consensus 566 ~stIdaLQEEKk 577 (776)
..++++-|++|.
T Consensus 157 ~~E~~rF~~~K~ 168 (201)
T cd07622 157 LEDVERFKKQKV 168 (201)
T ss_pred HHHHHHHHHHHH
Confidence 467777777763
No 229
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.59 E-value=17 Score=38.03 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004063 513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 582 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK 582 (776)
.+.+..|+..|..+=+ .. ..+|..++.+|..++.-+..+..||...+..|.++++|..-|...
T Consensus 34 L~e~~kE~~~L~~Er~----~h---~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~ 96 (230)
T PF10146_consen 34 LEEYRKEMEELLQERM----AH---VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544433 22 234456777888888888888888888888888888887666543
No 230
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=87.44 E-value=41 Score=35.30 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063 544 SQSEISSYKKKISSLEKERQDFQSTIEALQE 574 (776)
Q Consensus 544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 574 (776)
+...+....++.+.....-+.+...++||++
T Consensus 223 l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 223 LDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 3333333333333333444444444444443
No 231
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.22 E-value=63 Score=37.25 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHH
Q 004063 494 SFRNEYANVRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQST 568 (776)
Q Consensus 494 ~l~aErDaAq~E~n~-A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~st 568 (776)
.+.+||+..+..... -..+...|.--|+.|++...-|+++=+-.=-.|.++.+|.+-+-.+-+++|.+ +--++..
T Consensus 198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek 277 (446)
T KOG4438|consen 198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK 277 (446)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 446777777665544 67788888889999999999999998888888888888888777777777655 4557778
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc
Q 004063 569 IEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 569 IdaLQEEKklLqSKLR~asa~gKa 592 (776)
|+.||.=.+.++.-++.+...+-.
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~e 301 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGVE 301 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888887777777777777776643
No 232
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.20 E-value=38 Score=34.67 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004063 443 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 522 (776)
Q Consensus 443 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~ 522 (776)
|.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-.++...-.++-.+.++.-+.+....|+..
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444667889999988888888888888777777777777788888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 004063 523 LEEKALRLR 531 (776)
Q Consensus 523 LEek~lqLR 531 (776)
+.+++..|.
T Consensus 101 ~~~~l~~L~ 109 (194)
T PF15619_consen 101 TKDELKHLK 109 (194)
T ss_pred HHHHHHHHH
Confidence 888887763
No 233
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=87.19 E-value=64 Score=37.34 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
|+-+-..++|..+-+.-+--+-|||-.-+.++..+|.-.+. + =-.|-+-+|+|-.||+-||.||-
T Consensus 161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa---l----------vN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA---L----------VNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH---H----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555554544556666666555555443311 1 12466888999999999999993
No 234
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=87.14 E-value=25 Score=37.36 Aligned_cols=120 Identities=12% Similarity=0.172 Sum_probs=63.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 452 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
+++.+-..+...|..++ ...-.+-..++.++..+...|+..+..|+.|-.+...|+.+.....++.-.-.+.+-++|
T Consensus 92 ~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k 168 (252)
T cd07675 92 RVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAK 168 (252)
T ss_pred HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHH
Confidence 33444444444444422 222255577788888888888888999998888888887774443322211111122222
Q ss_pred hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh-----hhHHHHHHHHH--HHHH
Q 004063 532 SNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK 577 (776)
Q Consensus 532 S~eLKleKElE~l~~Er~S~~~q~ssi~kER-----~~l~stIdaLQ--EEKk 577 (776)
..-=+-..++++.+ ..|..++.-+-+.- ..|-..++.|| +|++
T Consensus 169 ~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~R 218 (252)
T cd07675 169 QQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERR 218 (252)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333222 33444444443332 33777888999 4444
No 235
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=86.87 E-value=3.8 Score=48.14 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 435 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 435 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
+-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|-....+|++++.|...||....++++++.
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 44556666666677777776666666666666667788888888888888888889999999999999999999888864
No 236
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=86.85 E-value=25 Score=32.21 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
.|++-|.-...-.+....+-......++.....+.+|...+..+.++
T Consensus 3 ~L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~ 49 (141)
T TIGR02473 3 RLQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQ 49 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433334333333333444444455555555555444443
No 237
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.84 E-value=34 Score=33.77 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 004063 567 STIEALQEEKKMM 579 (776)
Q Consensus 567 stIdaLQEEKklL 579 (776)
..++.||.+++.|
T Consensus 126 ~~ve~L~~ql~~L 138 (140)
T PF10473_consen 126 SAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHhhh
Confidence 4445555555444
No 238
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.81 E-value=43 Score=34.87 Aligned_cols=105 Identities=13% Similarity=0.208 Sum_probs=66.5
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 454 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEE----IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 529 (776)
Q Consensus 454 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E----i~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq 529 (776)
-...+.+...+.+.+.+|.++...+-++-.+ .......+..+..|+|.+..+++.....--.|-.-...+-+-+.-
T Consensus 29 ~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~ 108 (207)
T PF05010_consen 29 KKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEG 108 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555444444333222 222233455667777877777777766666777777777777788
Q ss_pred HHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 530 LRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 530 LRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
+|.++=++.+.++.+...+.....+|.++
T Consensus 109 ~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 109 YKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887777777777765
No 239
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.75 E-value=41 Score=35.25 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
.=++.+|.....+.+.|+-+ ...+ ....+...++++|+....-+|...+-.|+.+..++..|.+-.+.
T Consensus 77 ~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ 156 (241)
T cd07656 77 VQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKE 156 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777777777777653 1222 23344455666777777777777777777777777777666665
Q ss_pred HHHHH
Q 004063 516 LASEV 520 (776)
Q Consensus 516 LAaEV 520 (776)
.....
T Consensus 157 ae~~~ 161 (241)
T cd07656 157 AEKQE 161 (241)
T ss_pred HHHHH
Confidence 55443
No 240
>PRK11519 tyrosine kinase; Provisional
Probab=86.70 E-value=28 Score=41.17 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=8.0
Q ss_pred HHhhHHHHHHHHH
Q 004063 665 MIHNINALISELA 677 (776)
Q Consensus 665 ~IdsInaLisELa 677 (776)
..|.++.|.+.|.
T Consensus 506 ~~Ea~r~lrt~l~ 518 (719)
T PRK11519 506 AIEAIRSLRTSLH 518 (719)
T ss_pred HHHHHHHHHHHhh
Confidence 4566666666653
No 241
>PRK10869 recombination and repair protein; Provisional
Probab=86.65 E-value=69 Score=37.13 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 520 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 520 VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
...+|+|+..++.=.-|--..++.+..-++..++++..+
T Consensus 298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 356677777665555554545566666666666666544
No 242
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.62 E-value=29 Score=32.82 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 475 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk 475 (776)
|+-.+.......+.....-..+...-..|...+...+
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq 44 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ 44 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 243
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.61 E-value=47 Score=35.22 Aligned_cols=121 Identities=20% Similarity=0.252 Sum_probs=71.9
Q ss_pred cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhhHHHH--
Q 004063 410 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN-- 472 (776)
Q Consensus 410 ~~~F~s-~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsLa------~E----NsaLt~~yNqQ~~~v~-- 472 (776)
|.-|-. +..+++|..+.++|+.|.+-==. .+|-..+..++.+.++ .. .+.|.+-++.-++.+.
T Consensus 43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~ 122 (243)
T cd07666 43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC 122 (243)
T ss_pred HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 444432 77899999999999988653222 3444444445544432 22 4448888998888888
Q ss_pred --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHH
Q 004063 473 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADERA-------KILASEVIGLEEKALRL 530 (776)
Q Consensus 473 --qLk~~mE~Lq~Ei-------~aQ~~~le~l~aErDaAq~E~n~A~ERa-------K~LAaEVV~LEek~lqL 530 (776)
.+...+..+...+ ..+..++.++-.+|+.+|+++....|-. -.+..||..||+++.+.
T Consensus 123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666555554432 2333344455567777777766554422 24445555566665555
No 244
>PRK10722 hypothetical protein; Provisional
Probab=86.46 E-value=1.8 Score=45.91 Aligned_cols=51 Identities=29% Similarity=0.289 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 004063 671 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 721 (776)
Q Consensus 671 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq 721 (776)
.|+-.|+.||.|--+-.-+.-.+++.|+.++++|.++|+.++.+||-+|.=
T Consensus 155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788876655556666799999999999999999999999999863
No 245
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=86.29 E-value=26 Score=36.38 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
....-...+.+..+|..||...+.-|+.||.....||...-
T Consensus 145 va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 145 VAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344556677777777788888888888888888876543
No 246
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.20 E-value=37 Score=33.58 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004063 516 LASEVIG 522 (776)
Q Consensus 516 LAaEVV~ 522 (776)
|..|+..
T Consensus 85 L~~eie~ 91 (177)
T PF07798_consen 85 LQREIEK 91 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 247
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.07 E-value=60 Score=35.92 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH-------HHHHHHHHHH
Q 004063 506 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST-------IEALQEEKKM 578 (776)
Q Consensus 506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st-------IdaLQEEKkl 578 (776)
++...||.+ |-.+.+.+.+++.+|-.+---.--|.+.+..||+.|+-++.-+-.|=..+..- ||+|=.|-+-
T Consensus 122 ~~~~~ere~-lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRy 200 (319)
T PF09789_consen 122 RHFPHERED-LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRY 200 (319)
T ss_pred cccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 344455544 33456667777776655544445556678888888888888776666666655 8888888888
Q ss_pred HHHHHHhhcc
Q 004063 579 MQSKLRKASG 588 (776)
Q Consensus 579 LqSKLR~asa 588 (776)
|+.||.++-.
T Consensus 201 L~erl~q~qe 210 (319)
T PF09789_consen 201 LKERLKQLQE 210 (319)
T ss_pred HHHHHHHHHH
Confidence 8888886543
No 248
>PF15294 Leu_zip: Leucine zipper
Probab=86.06 E-value=36 Score=37.00 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM--EKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m--E~Lq~Ei~aQ~~~le~l~aEr 499 (776)
-+.|..-|++|..|=-.|.--|..-...+-..++|+..|...-|......+..+... ---.+++..=...++.++.|+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999998888777555444310 000111111112345556777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
..+..... ++.+.|...|..--.++++.+-.---+++++++--.+ ..+|. .|...+..-.++.|.|
T Consensus 207 ek~~~d~~---~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq----T~ay~-------NMk~~ltkKn~QiKeL 272 (278)
T PF15294_consen 207 EKALQDKE---SQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ----TAAYR-------NMKEILTKKNEQIKEL 272 (278)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc----cHHHH-------HhHHHHHhccHHHHHH
Confidence 66644333 3566666666665555555544433445555553333 22222 3344555556777777
Q ss_pred HHHHHh
Q 004063 580 QSKLRK 585 (776)
Q Consensus 580 qSKLR~ 585 (776)
..||++
T Consensus 273 Rkrl~k 278 (278)
T PF15294_consen 273 RKRLAK 278 (278)
T ss_pred HHHhcC
Confidence 777653
No 249
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=85.99 E-value=46 Score=38.09 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHhhhHHHHHHHHHHHH
Q 004063 444 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN--VRLECNAADERAKILASE 519 (776)
Q Consensus 444 ~~s~~l~EsLa~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa--Aq~E~n~A~ERaK~LAaE 519 (776)
+-++++++.|-.+=+.+...-|++ ...|.-.+.++++-++.+..-+.+|..|+....- -..+........-.|..|
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~q 294 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQ 294 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHH
Confidence 568889999999999999988875 4678888889998888888888888888765532 123334455666677778
Q ss_pred HHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHHHHHHHHHhHH--HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 520 VIGLEEKALRLRSNEL-------KLERQLENSQSEISSYKKKISSLE--KERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 520 VV~LEek~lqLRS~eL-------KleKElE~l~~Er~S~~~q~ssi~--kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
.+.++-++..|++.-- -++.+++.|..++...+.++..-. .--.....+.++|.-|.+.++..+.-
T Consensus 295 La~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s 369 (434)
T PRK15178 295 LAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES 369 (434)
T ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777766422 223333344444444444432100 00122445558888888888777754
No 250
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.96 E-value=24 Score=35.73 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 553 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~ 553 (776)
+.|-.+...-++.--.|.-.|=.||+.|--.+..+|+.. +++|..++.|.-++-+
T Consensus 126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r 180 (182)
T PF15035_consen 126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR 180 (182)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence 333333333344444555566699999999999998865 6889999888766543
No 251
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.94 E-value=94 Score=38.03 Aligned_cols=268 Identities=15% Similarity=0.210 Sum_probs=159.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---Hhh-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEA----SRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK 486 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~----s~~l~EsLa---~EN-----saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 486 (776)
..+.++|.+++|+.|+.|.++..-+.. -++-+++|- .|. ++++..-.+.-..-.+|..++..+..++.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999988764321 233444332 222 33443334444444455566666666555
Q ss_pred HHHHHhhhhH---HHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 004063 487 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 559 (776)
Q Consensus 487 aQ~~~le~l~---aErDaAq~E~n~A~ERa----K~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~ 559 (776)
.-.++..++. .|+++...++.+...++ ..|..-+..+|.++.-||-.-.=++|||+=-..|++=-++....+-
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~ 182 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS 182 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444443 36666666666555554 4677788888888888888888889999988888888888888777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCC
Q 004063 560 KERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDAS 638 (776)
Q Consensus 560 kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs 638 (776)
|--.+-++-|-+|..|=+.|..-+|+ .++ .++ .-+|- --....+.|-...|.- + ..+
T Consensus 183 kqhle~vkkiakLEaEC~rLr~l~rk~lpg--paa-~a~mk---~ev~~~~~~~~~~r~r-----------~-----~~~ 240 (769)
T PF05911_consen 183 KQHLESVKKIAKLEAECQRLRALVRKKLPG--PAA-LAQMK---NEVESLGRDSGENRRR-----------R-----SPS 240 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--hHH-HHHhH---HHHHHhccccccccCC-----------C-----CCC
Confidence 76667778899999999999999985 222 211 11110 0111111111100000 0 000
Q ss_pred CCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063 639 GSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 716 (776)
Q Consensus 639 ~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 716 (776)
.-+ .|. ..+ ...+..-. +.++..-.=+-.++.|=..|..+|+..-..+.-.+-.=++...||-...-+|+
T Consensus 241 ~~~-~~~--~~~-~~~~~~~~----~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~ 310 (769)
T PF05911_consen 241 RPS-SPH--DFS-PQNPQKRS----KESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLK 310 (769)
T ss_pred ccc-ccc--ccc-ccccccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 000 00101111 22222222334567788888888888888888888888888889988888874
No 252
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=85.91 E-value=75 Score=36.85 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063 468 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 523 (776)
Q Consensus 468 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L 523 (776)
...+.++.++++.|...+.....+-..+...++....-.+++.++++.|..|+..|
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444444445555555555555555555555555555544
No 253
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=85.84 E-value=14 Score=40.81 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 549 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE-rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~ 549 (776)
|.+.+..++.|+.++..+.+.+++.++. ++.|+.++ +|-..|+..-+.=.+++.+.+..--+++-.+.... .
T Consensus 100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~ 172 (352)
T COG1566 100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---A 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---H
Confidence 4445555666666666666666666663 66655544 35555664444445556666665555555555544 5
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK----ASGSGKS 592 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~----asa~gKa 592 (776)
..++...++++++...+..|..++..++.+.--|.+ ++..|.+
T Consensus 173 ~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V 219 (352)
T COG1566 173 AQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYV 219 (352)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceE
Confidence 667788888888889899999998888888877774 5555554
No 254
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.59 E-value=40 Score=35.28 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL-----ERQLENSQSEISSYKKKISSLEKERQDFQSTI 569 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl-----eKElE~l~~Er~S~~~q~ssi~kER~~l~stI 569 (776)
+..+...+++..-.+..+-|.|..++..++.++-.+.+.-..+ +.=+..+-.++-++...+..+...-+.+...+
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~ 115 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQV 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555666555555555555444433222 11122355667778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q 004063 570 EALQEEKKMMQSKLRKASGSGK 591 (776)
Q Consensus 570 daLQEEKklLqSKLR~asa~gK 591 (776)
++|......|+.|+.++-....
T Consensus 116 ~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 116 EKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876555333
No 255
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=85.53 E-value=2.8 Score=42.75 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063 671 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720 (776)
Q Consensus 671 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 720 (776)
.|.-.|++||-|--+--.+.-.+++.|+.++..|..+|+.++..||-+|-
T Consensus 109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD 158 (179)
T PF13942_consen 109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD 158 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 46678899999988888888899999999999999999999999999985
No 256
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.52 E-value=64 Score=40.53 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=89.2
Q ss_pred cCCCccccccccccccCCchhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Q 004063 400 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQ---------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV 470 (776)
Q Consensus 400 ~~~dE~~~e~~~~F~s~~~~~~faaLqqhIeDLT~---------EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~ 470 (776)
...||.+++..-++-.. -.-.|++.|+.|-. -|.+..|-|.+.+..++ -..-++.||+-...
T Consensus 186 lr~~e~~Le~~~~~~~~----~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~-----y~~~~~ey~~~k~~ 256 (1072)
T KOG0979|consen 186 LREDEKSLEDKLTTKTE----KLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE-----YKKHDREYNAYKQA 256 (1072)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hHhhhHHHHHHHHH
Confidence 44566666555544332 22334444443322 13344455555555553 34568899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHhhh
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELES-------FRNEYANVRLECNAADERAKILAS-------EVIGLEEKALRLRSNELK 536 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~-------l~aErDaAq~E~n~A~ERaK~LAa-------EVV~LEek~lqLRS~eLK 536 (776)
+.-++.+++.|..+++-=.-..+. ..+++.-++.+|++|..+.+.... +|+.+-.+..-++-.+.+
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~ 336 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK 336 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888876543333322 345566778888888887766554 455555555556666666
Q ss_pred hHHHhhhhHHHHHHHHHHH
Q 004063 537 LERQLENSQSEISSYKKKI 555 (776)
Q Consensus 537 leKElE~l~~Er~S~~~q~ 555 (776)
.++.+++++..+...+.++
T Consensus 337 rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 337 RQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 6777777666666555544
No 257
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=85.52 E-value=6.5 Score=44.25 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=35.7
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
.++.+..-...|..++..+..++..+...+..|++++..|+.+|.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555566666777777777777778888888888888888887655
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.24 E-value=23 Score=42.09 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh
Q 004063 519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 562 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER 562 (776)
|+..++.++.+| +++|++-+.+++.+++++..+.+-|
T Consensus 475 ei~~~~~~I~~L-------~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 475 EIRARDRRIERL-------EKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555433 5666666666666666666554433
No 259
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=85.17 E-value=11 Score=42.44 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
.+.+|+.++++|+.+++.....++.+.+..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777776665555555554443
No 260
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.14 E-value=10 Score=39.82 Aligned_cols=62 Identities=31% Similarity=0.476 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
||++...+.-.--|++.+++....+.+....++..+.|-=+.+..+.|+|=||-..||.++-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444433333344444444444444444455554444445666667777777555555543
No 261
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.02 E-value=6.3 Score=45.21 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh-HHHhhhhHHHHHHHHHHHHHHH
Q 004063 513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS-LEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ss-i~kER~~l~stIdaLQEEKklL 579 (776)
.+.|.+++-.++.++..+.++-=++.+|-++|+..-.....++.. +..+|.+++.+.+.|++|+..+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433334333332 2244444444444444444333
No 262
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.82 E-value=15 Score=42.97 Aligned_cols=139 Identities=23% Similarity=0.264 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHH
Q 004063 441 RSLEASRALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF------------RNEYAN 501 (776)
Q Consensus 441 R~L~~s~~l~EsLa~-------ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l------------~aErDa 501 (776)
|+|+-+-++-+.|-. .|+.|-++.|+--..|.+|+-++-|--.-+..+-.+.+-= -.+|.+
T Consensus 76 ~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~ 155 (596)
T KOG4360|consen 76 RDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSA 155 (596)
T ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhh
Confidence 556666666555544 4444555566666666666655544433333333222211 234555
Q ss_pred HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 502 VRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 502 Aq~E~n~-A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
-|.+..+ -.++.|.+-.|.+.|-.||..+|..++--+-.-.. ...+.+-+..++.++.+|=++.-+.+.++|||.
T Consensus 156 ~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 156 FQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 47888888888888888888887766532211000 122334445555555555555555555555554
Q ss_pred HHH
Q 004063 577 KMM 579 (776)
Q Consensus 577 klL 579 (776)
-.|
T Consensus 236 skL 238 (596)
T KOG4360|consen 236 SKL 238 (596)
T ss_pred HHH
Confidence 333
No 263
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.73 E-value=3.2 Score=40.17 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 004063 564 DFQSTIEALQEEKKMMQSKLRKASGSGK 591 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR~asa~gK 591 (776)
++...|+.|++|.+.++.||..+-.+..
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4667777788888888888776555333
No 264
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=84.48 E-value=36 Score=35.53 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
+.|+=||-.+...|.||..-..++
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Ei 33 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEI 33 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444433333333
No 265
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=84.01 E-value=1.4e+02 Score=38.51 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=47.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
.+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+...+.+..++..+-.+..+...-+.+.+.+
T Consensus 846 ~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~ 925 (1294)
T KOG0962|consen 846 QKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEEL 925 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHH
Confidence 34455666666666666666666665555555555666666666666666666666665555544444444444444444
Q ss_pred HHH
Q 004063 496 RNE 498 (776)
Q Consensus 496 ~aE 498 (776)
+++
T Consensus 926 k~~ 928 (1294)
T KOG0962|consen 926 KNE 928 (1294)
T ss_pred HHH
Confidence 444
No 266
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.79 E-value=11 Score=33.19 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
|-.+|++--..+..|+.++++|+++-.+-....+.++.|-...+.+.++..+|.+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333333433333444444444443
No 267
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.67 E-value=89 Score=35.82 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH-HHHHHH-HHHHH------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKLQEE-IKVQL------VELESFRNEYANVRLECNAADERAKILASE 519 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m-E~Lq~E-i~aQ~------~~le~l~aErDaAq~E~n~A~ERaK~LAaE 519 (776)
+++..+...+.+-...|.+-+..+-+-|+++ +.|+.. ..... ++++.++.|++.++.+++....+...|-.|
T Consensus 224 ~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 224 ELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566665544444444433 223331 11011 125555555555555555555555444444
Q ss_pred HHHHHH
Q 004063 520 VIGLEE 525 (776)
Q Consensus 520 VV~LEe 525 (776)
...+|.
T Consensus 304 ~~d~e~ 309 (511)
T PF09787_consen 304 LQDLEA 309 (511)
T ss_pred HHHHHH
Confidence 444443
No 268
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=83.65 E-value=60 Score=33.88 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 518 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAa 518 (776)
......++-.+|++++.....+|+..+..|+.+..++..|+......-.
T Consensus 106 ~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 106 AKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566778888888888888999999998888888888766544
No 269
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.55 E-value=76 Score=34.93 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
+|.+..+-.+.+-.++.+.|+.|.-.-=+++..+...-=++++++.+++.++--+..++..+-.+...++..|.-++...
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555544444444444444444444455555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 004063 577 KMMQSKLR 584 (776)
Q Consensus 577 klLqSKLR 584 (776)
+.|..+.+
T Consensus 245 k~l~~~~~ 252 (294)
T COG1340 245 KALRAKEK 252 (294)
T ss_pred HHHHHHHH
Confidence 54444444
No 270
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.49 E-value=61 Score=33.82 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAA 455 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ 455 (776)
.|..-|.+|-..=-++|-+|+.+..+-+.|.+
T Consensus 40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled 71 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQALQKAKALEEELED 71 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344444444444555555555544444443
No 271
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=83.47 E-value=71 Score=34.55 Aligned_cols=226 Identities=15% Similarity=0.215 Sum_probs=138.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
.+.+..|++-+++|..-+-.-..-|....++-+.=+.|.+.+-.+|-++.. ....|+.++.+++.-+..-...-..+
T Consensus 71 ~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l 150 (337)
T cd09234 71 PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTEL 150 (337)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 477889999999999999999999999988888888889999999987621 24456666655555444333333333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 575 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE 575 (776)
..-|+. ...-.+.|......|+..+-..+. +-.. +. +...++++ .+...|+.|..|
T Consensus 151 ~~~~~~-------~~~~l~lL~~~~~~l~~~iPs~~~--~~~~-~~-------~~~v~~Lr-------~ll~kl~~lk~e 206 (337)
T cd09234 151 HKAMNL-------HIANLKLLAGPLDELQKKLPSPSL--LDRP-ED-------EAIEKELK-------RILNKVNEMRKQ 206 (337)
T ss_pred HHHHHH-------HHHHHHHHcCcHHHHHhhCCCccc--cCCc-cc-------HHHHHHHH-------HHHHHHHHHHHH
Confidence 333332 223344555555555555432111 1000 11 11222222 334456666677
Q ss_pred HHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCccccccccccc
Q 004063 576 KKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLA 655 (776)
Q Consensus 576 KklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~ 655 (776)
++.+...||.... ++|+ .+.+++.. |. .|
T Consensus 207 R~~l~~~Lk~k~~--------------------~DDI----------~~~ll~~~----------------~~-~~---- 235 (337)
T cd09234 207 RRSLEQQLRDAIH--------------------EDDI----------TSKLVTTT----------------GG-DM---- 235 (337)
T ss_pred HHHHHHHHHHHhh--------------------cCCc----------hHHHHHhc----------------ch-hH----
Confidence 7777777774221 2333 12222111 00 12
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHH
Q 004063 656 VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT 719 (776)
Q Consensus 656 ~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlt 719 (776)
-.|=+.+|..-+.....|...-..++.++.+|..+-......+....+..++-+..-|+|+.+-
T Consensus 236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay 299 (337)
T cd09234 236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASY 299 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2355677888888888888888888999999988888887766665667777777777777654
No 272
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.36 E-value=38 Score=40.21 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=91.6
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004063 408 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 487 (776)
Q Consensus 408 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a 487 (776)
+-||+=|=-.++-=-+++|.||.-|-..|-.-...|+-.++=-+.+-.--+.|.+||-+-.-.-+-|...|.+|.+-.
T Consensus 569 ~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~-- 646 (741)
T KOG4460|consen 569 QVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF-- 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence 446665555555555667777777765554433344444444444444445566666544333333333333333311
Q ss_pred HHHHhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 004063 488 QLVELES-FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 566 (776)
Q Consensus 488 Q~~~le~-l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~ 566 (776)
...+-. ..+|||= .+|..-+-...+.|++-++.+..+..+-|+- ..+-++. .-+.+|+.-++.|..++
T Consensus 647 -~~~lp~l~~AErdF-k~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H---~~~v~~a------l~K~~Y~l~~~Q~~~iq 715 (741)
T KOG4460|consen 647 -HSELPVLSDAERDF-KKELQLIPDQLRHLGNAIETVTMKKDKQQQH---MEKVLSA------LPKPTYILSAYQRKCIQ 715 (741)
T ss_pred -cccCCcchhHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh------ccCCcccccHHHHHHHH
Confidence 111122 2677775 4566777777777877777776666553221 1222222 22566777788888999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004063 567 STIEALQEEKKMMQSKLR 584 (776)
Q Consensus 567 stIdaLQEEKklLqSKLR 584 (776)
+++..|-++....-.+++
T Consensus 716 siL~~L~~~i~~~~k~VK 733 (741)
T KOG4460|consen 716 SILKELGEHIREMVKQVK 733 (741)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988888766555544
No 273
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=83.33 E-value=14 Score=33.50 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=59.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
.+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++ ++.++..++..+
T Consensus 21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~ 92 (96)
T PF08647_consen 21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence 455789999999999999998877777788888999999999999999999999999988 555555554443
No 274
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=83.24 E-value=11 Score=34.35 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
.|......++.+..+.+..+..+...||+++.++ ..|+....++|-++|+..+.+...+..|.
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl--------------~~Ek~kadqkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRL--------------EAEKAKADQKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666667778888999999999999999866 34456667777777777777776665554
No 275
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.19 E-value=34 Score=32.84 Aligned_cols=95 Identities=25% Similarity=0.328 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
.-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+. ..+..++..|+.+ ++.+...|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~e-------l~~l~~ry 84 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQE-------LEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHH
Confidence 456778888888888888888888888887788888877777665333 2222333333332 35566678
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004063 500 ANVRLECNAADERAKILASEVIGLEE 525 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEe 525 (776)
+++..=+.+=.|+.-.|.+.|..|-+
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 88888888888888777777776654
No 276
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.88 E-value=9.2 Score=38.62 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 004063 437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 516 (776)
Q Consensus 437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~L 516 (776)
+++++.|.......+.|..||++|.+.-.+....+.+|+.+++.|+.+ +..+..+|.. +-..++|++.|
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl 154 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence 456667777777788899999998876666555555555555555554 5677777776 34567777776
Q ss_pred H
Q 004063 517 A 517 (776)
Q Consensus 517 A 517 (776)
+
T Consensus 155 ~ 155 (161)
T TIGR02894 155 A 155 (161)
T ss_pred H
Confidence 5
No 277
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=82.75 E-value=68 Score=33.81 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-H-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063 437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSV-V-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 504 (776)
Q Consensus 437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~-v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 504 (776)
+.+.++-.-.-.=++.+|++++.+.+..+-+-.. + ..+-.+.+.++.++......|+..+..|+.+-.
T Consensus 63 ~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack 142 (253)
T cd07676 63 YTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCK 142 (253)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444556677777776666543211 1 112234567788888888888888999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh-----hhHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ 573 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER-----~~l~stIdaLQ 573 (776)
+...|..+.....+....=..++.++|..--+...+++..+ ..|..++.-+.+.- ..|-..++.||
T Consensus 143 e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aK---n~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ 213 (253)
T cd07676 143 EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK---AEYSSYLQKFNKEQHEHYYTHIPNIFQKIQ 213 (253)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88888876654433211111122222222222222333322 33444444443332 44777888888
No 278
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.68 E-value=6.1 Score=42.53 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
..+.++.+....++..|++++..|+..-=+..++...+..++..+..++.
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333333444444444444444433333333333334444444444333
No 279
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.66 E-value=57 Score=32.84 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=23.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 004063 414 YSTKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESL 453 (776)
Q Consensus 414 ~s~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsL 453 (776)
--+..+.+|..+...|+.|..-==. .+|-+.+.++++..+
T Consensus 8 ~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~ 51 (200)
T cd07624 8 LLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDEL 51 (200)
T ss_pred hhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999888643222 234444444444444
No 280
>PRK10698 phage shock protein PspA; Provisional
Probab=82.63 E-value=64 Score=33.40 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHhHH
Q 004063 701 NNELSRKLEHQTQRL 715 (776)
Q Consensus 701 N~ELsRKLE~qtQRL 715 (776)
..++..+|+.++.++
T Consensus 203 ~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 203 DDEISEQLAALKAKM 217 (222)
T ss_pred cchHHHHHHHHHHHh
Confidence 345666666666553
No 281
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.61 E-value=64 Score=33.45 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=48.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhH-HHHHHHHHhhhhc
Q 004063 664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR-LELLTAQNMANEN 727 (776)
Q Consensus 664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQR-LELltsq~m~~e~ 727 (776)
.+..+|...|.+....=..|..+|..+.....+..++|..-...|+..+.+ .++..-+.++.+.
T Consensus 178 ~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~ 242 (264)
T PF06008_consen 178 SLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSET 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445889999999999989999999999988888888988888888765544 3444444454433
No 282
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.36 E-value=60 Score=38.90 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=10.3
Q ss_pred ccchhhHHHHHhhHHHHHHHHH
Q 004063 656 VNIPHDQMRMIHNINALISELA 677 (776)
Q Consensus 656 ~~Ip~DQlR~IdsInaLisELa 677 (776)
--|| |.|+-|-..+.++.
T Consensus 419 Giip----ral~~lF~~~~~~~ 436 (670)
T KOG0239|consen 419 GIIP----RALEKLFRTITSLK 436 (670)
T ss_pred CccH----HHHHHHHHHHHhhc
Confidence 4567 66666655555443
No 283
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.30 E-value=37 Score=41.95 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 456 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
+|..++.+ +.....|.-||.++++|+.++.... -.. +.+|+..|-+++.++-+..=
T Consensus 318 knk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~--~~~---------------------~~~ei~sl~~e~~~l~~~~d 373 (913)
T KOG0244|consen 318 KNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKA--GDE---------------------LDAEINSLPFENVTLEETLD 373 (913)
T ss_pred cccccccc-cHHHHHHHHHHHHHHHHHHHHHhhc--ccc---------------------chhHHhhhhhhhhhhhhhHH
Confidence 45555554 5566667777777777777654443 000 33334333333333333322
Q ss_pred hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 536 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 536 KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
++..+.....+.+.+--.+..-.+++++.++.+++.+++.+
T Consensus 374 ~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~ 414 (913)
T KOG0244|consen 374 ALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLL 414 (913)
T ss_pred HHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 33333334444445555666677888888888888777554
No 284
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.29 E-value=49 Score=34.84 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
..+.+++.+|+.|.+|..++.-+|-.+...+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DI 62 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDI 62 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555555555544443
No 285
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=82.24 E-value=66 Score=33.31 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 491 (776)
Q Consensus 437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~ 491 (776)
..|..+...-....+.+|..+..+....|+-...+..|..+|++.+..+..+...
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k 115 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKR 115 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4677777777888888888888888888877777777778887777766555443
No 286
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.21 E-value=29 Score=35.07 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 444 EASRALSESLAAENSSLTDS--------------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 444 ~~s~~l~EsLa~ENsaLt~~--------------yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
..-.++.++|.+|+=--+++ .++....+..|+.+++.++.+|..-...++..+.+|.
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~ 100 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE 100 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44578899999987554443 4455555556666666665555544444444444443
No 287
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.17 E-value=54 Score=36.08 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.0
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063 691 LAQSSKLKDLNNELSRKLEHQTQRLE 716 (776)
Q Consensus 691 sr~~~dLk~lN~ELsRKLE~qtQRLE 716 (776)
+.-++.||.+|-||..|..++..||-
T Consensus 277 s~l~dQLK~qNQEL~ski~ELE~rLq 302 (307)
T PF10481_consen 277 SQLLDQLKAQNQELRSKINELELRLQ 302 (307)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 44578999999999999999888874
No 288
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.92 E-value=1.1e+02 Score=35.78 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=14.2
Q ss_pred CCCcccccCCcc-ccccccCCCCCCC
Q 004063 301 ATNKFTLGKSRA-SFLDSLNVPRASS 325 (776)
Q Consensus 301 ~~~et~~~rSRp-SFLDSlnV~Ra~~ 325 (776)
+.-+++.+-+-| |||.-=||.|--.
T Consensus 192 ~a~esaLn~~QpqSFl~~en~~~~ve 217 (527)
T PF15066_consen 192 TAKESALNPSQPQSFLYKENVCRDVE 217 (527)
T ss_pred hhhhhccCCCCCcchhhhcccccccc
Confidence 333444444443 6888777776554
No 289
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.57 E-value=1.5e+02 Score=36.95 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHHHhHhhhhHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA----------SEVIGLEEKALRLRSNELKLERQ 540 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA----------aEVV~LEek~lqLRS~eLKleKE 540 (776)
..+|+-+.|+|+.+++-+...-.+++.+++..+-++..+..-...+. .|.-.+..+..++.-++--+.++
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~ 759 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKE 759 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555566666655555553332222222 23333344444444344444555
Q ss_pred hhhhHHHHHHHHHHHH
Q 004063 541 LENSQSEISSYKKKIS 556 (776)
Q Consensus 541 lE~l~~Er~S~~~q~s 556 (776)
+++...-+.+..+..+
T Consensus 760 L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 760 LNKKNADIESFKATQR 775 (970)
T ss_pred HHhhhHHHHHHHHHHh
Confidence 5544444455444444
No 290
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.55 E-value=85 Score=35.00 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
++.+..||..++.++.++.++-+.+..-|-.+..++.++
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 466677888888888888888888877777666665543
No 291
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.51 E-value=9.5 Score=40.22 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH-------HHHHHHh
Q 004063 544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM-------MQSKLRK 585 (776)
Q Consensus 544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl-------LqSKLR~ 585 (776)
+...|++++++...++.|-..+..++..||.|.+. |..|+|=
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888887777777777777777666654 4557773
No 292
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=81.49 E-value=8.9 Score=34.21 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
++-+..+||.+--..++||.-.--+.+...+=+--+.|||++.+..+..||
T Consensus 20 ~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 20 LMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 333445566666666788888777788888888889999999998887765
No 293
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.46 E-value=20 Score=42.66 Aligned_cols=68 Identities=24% Similarity=0.431 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHh---HhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 004063 518 SEVIGLEEKALRLRS---NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 593 (776)
Q Consensus 518 aEVV~LEek~lqLRS---~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~ 593 (776)
+|+..|+++|-++|- .+++-.++++.+..++..+++++.--.+.+.+|...++.|. |+|.+...|+..
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~--------k~~~lE~sG~g~ 520 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR--------KMRKLELSGKGT 520 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhcCCCc
Confidence 555666666655543 34455667777777777777777755544444444433332 355555566653
No 294
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.34 E-value=11 Score=35.09 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 486 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 486 (776)
..-||++||.||..+|-=++. +.+-+.=+|=..|=|-.-.+.|.+........+.++..+.++|+..++
T Consensus 25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999977643322 223344445555555555555555555555555555555555555555
Q ss_pred HHHHHhhhhHHH
Q 004063 487 VQLVELESFRNE 498 (776)
Q Consensus 487 aQ~~~le~l~aE 498 (776)
.+..++..++.|
T Consensus 105 ~~~~~~k~lk~E 116 (118)
T PF13815_consen 105 KQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 555555555444
No 295
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=81.32 E-value=36 Score=37.25 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=3.9
Q ss_pred hccCCCc
Q 004063 586 ASGSGKS 592 (776)
Q Consensus 586 asa~gKa 592 (776)
++..|.+
T Consensus 220 AP~dG~V 226 (390)
T PRK15136 220 SPMTGYV 226 (390)
T ss_pred CCCCeEE
Confidence 5555654
No 296
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.17 E-value=44 Score=30.55 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=23.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063 466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 517 (776)
Q Consensus 466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA 517 (776)
.+...+..+...+.+-+.++......|..-...|+....++.+-..||..-+
T Consensus 18 ~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a 69 (126)
T PF13863_consen 18 TKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRA 69 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333344444444444444444444444444455555555554444444333
No 297
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=81.01 E-value=47 Score=31.28 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063 457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 502 (776)
Q Consensus 457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA 502 (776)
.+.+...|+.-......|+...+.++.+++....++..+..++...
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888888888887777777777776666654
No 298
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.96 E-value=1.5e+02 Score=36.62 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063 497 NEYANVRLECNAADERAKILASEVIGL 523 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~L 523 (776)
.+.......+..+..+...+..+...+
T Consensus 386 ~~~~~~~~~~~~~~~~l~~l~~~~~~~ 412 (1042)
T TIGR00618 386 QQKTTLTQKLQSLCKELDILQREQATI 412 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 299
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.72 E-value=1.4e+02 Score=35.94 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=76.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 526 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v-~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek 526 (776)
+--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-...||...+-....--+|-.+..---+.|+.+
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~ 638 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNR 638 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444455555666676666555 5789999999999999999998888887765444443344443333334567778
Q ss_pred HHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 527 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 527 ~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
|.+||+.-= .++-.+...-.-+.+++..|-++=++|+..||++.--++.
T Consensus 639 ~~~L~~~~~---~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 639 MKKLLHSFH---SELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHhccc---ccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888876311 1111222222335566666666666667777666644433
No 300
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=80.62 E-value=42 Score=35.29 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhccCCCcc
Q 004063 566 QSTIEALQEEKKMMQSKLR----KASGSGKSI 593 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR----~asa~gKa~ 593 (776)
...++.++.+.+.++.+|. .++-.|.+.
T Consensus 184 ~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~ 215 (331)
T PRK03598 184 KASLAQAQAALAQAELNLQDTELIAPSDGTIL 215 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhcCEEECCCCeEEE
Confidence 3444445555555555554 355666653
No 301
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=80.11 E-value=1.2e+02 Score=35.42 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=13.0
Q ss_pred ccccccCCCCCccccccc
Q 004063 187 DFVTKISPQNSVSTLFQS 204 (776)
Q Consensus 187 ~~~~~is~q~s~~~~~q~ 204 (776)
-|.++-.|.-+..|-.|+
T Consensus 12 ~F~Ny~gp~~~~~t~~~i 29 (489)
T PF05262_consen 12 EFINYSGPHASIETAQQI 29 (489)
T ss_pred EEEecCCCCcchhHHHHH
Confidence 577777777777777764
No 302
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=79.83 E-value=1e+02 Score=33.94 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----H
Q 004063 426 EQHIEDLTQEKFALQRSLEASRALS-----ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF----R 496 (776)
Q Consensus 426 qqhIeDLT~EKfaLqR~L~~s~~l~-----EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l----~ 496 (776)
=||.|..-++=+.|=..|+.-++=. .+|.+.-..+-+.--+|...|.+|+++++.|+.+|+.+...+..- .
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~ 119 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITEN 119 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 3666666666666666665544432 345555555666666777777777888877777775443322221 1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
.-..+......+++++...+..|+...++++.+..+.--..++.+..+.
T Consensus 120 ~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 120 GYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT 168 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223344567777777777777777777666554444444444443
No 303
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=79.82 E-value=66 Score=33.59 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063 476 SEMEKLQEEIKVQLVELESFRNEYANVRLEC 506 (776)
Q Consensus 476 ~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 506 (776)
..+++++.++......++..+++++.|+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 120 (327)
T TIGR02971 90 RAAAKLFKDVAAQQATLNRLEAELETAQREV 120 (327)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555544443
No 304
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.76 E-value=47 Score=33.93 Aligned_cols=60 Identities=33% Similarity=0.388 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 514 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 514 K~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as 587 (776)
+.+-.++..||.++++| +++...+.++.....+++. .+.+.++++.++...+.-+...+.
T Consensus 127 ~~~e~~i~~Le~ki~el-------~~~~~~~~~~ke~~~~ei~-------~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 127 KELESEIKELEMKILEL-------QRQAAKLKEKKEAKDKEIS-------RLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555544 3333334444444444444 455666777777777766666543
No 305
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.50 E-value=21 Score=37.56 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 551 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~ 551 (776)
++..++.++++.....+.- +.+|-|...-+.+.+.+..++.+.+...++++...+ +|+.+++..|.+++
T Consensus 130 ~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al-------~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDAL-------KKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHcccHHHHH
Confidence 4444445444443322221 344444444444555555555555555555555433 45555555555555
Q ss_pred HHHHH
Q 004063 552 KKKIS 556 (776)
Q Consensus 552 ~~q~s 556 (776)
-.+++
T Consensus 199 lee~~ 203 (216)
T KOG1962|consen 199 LEEYS 203 (216)
T ss_pred HHHHH
Confidence 44444
No 306
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.34 E-value=25 Score=40.55 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhh
Q 004063 519 EVIGLEEKALRLRSNELKLERQLEN 543 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~ 543 (776)
|+..+..++.++|..--|+||++|.
T Consensus 303 e~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445666677777777777764
No 307
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=79.23 E-value=1.6e+02 Score=35.98 Aligned_cols=125 Identities=20% Similarity=0.290 Sum_probs=60.4
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHH
Q 004063 453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK-ALRLR 531 (776)
Q Consensus 453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek-~lqLR 531 (776)
|--||..|...++.-+..+..++.+|.--...-.-.+-.++.+..+-...+-+++.+.+.++.--.||...-.+ =...|
T Consensus 497 LslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r 576 (786)
T PF05483_consen 497 LSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENAR 576 (786)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH
Confidence 34445555555555555555555555444333333333444444444444444444444444444444331111 11111
Q ss_pred ---hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 532 ---SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 532 ---S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
...++..+++.-+.-.+...++++. .-.+.|+.||.|-++|..++-
T Consensus 577 ~~e~e~~~k~kq~k~lenk~~~LrKqvE-------nk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 577 SIECEILKKEKQMKILENKCNNLRKQVE-------NKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHH
Confidence 2233444444444444445555444 335677888888888876654
No 308
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.87 E-value=1.8e+02 Score=36.27 Aligned_cols=114 Identities=22% Similarity=0.323 Sum_probs=66.5
Q ss_pred HhhhHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------
Q 004063 455 AENSSLTDSYNQQRSVVNQL----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL------- 523 (776)
Q Consensus 455 ~ENsaLt~~yNqQ~~~v~qL----k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L------- 523 (776)
.||+.|.++.-+.-.++.+- ++++.|.|.++..+--.+.+++.-|+ .-.+-.+.|..|+..+
T Consensus 980 ~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~-------~K~~~l~El~qEl~d~GV~AD~g 1052 (1480)
T COG3096 980 SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYD-------TKKELLNELQQELQDIGVRADSG 1052 (1480)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHhCCCcCcc
Confidence 56666655543332222211 12223333333333344444554444 4556677788888654
Q ss_pred -HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 524 -EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 524 -Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
|+++. .|-+|| ...|.--+..+..+++++..++.|-+.|.+.|.++.-.-+-
T Consensus 1053 AeeRA~-~RRDEL--h~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~ 1105 (1480)
T COG3096 1053 AEERAR-IRRDEL--HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFE 1105 (1480)
T ss_pred hHHHHH-HHHHHH--HHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 67766 555666 34556667778888899999988888888877776544433
No 309
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.80 E-value=33 Score=37.40 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh------
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES------ 494 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~------ 494 (776)
|=++|...||=|+.+=+.|+-.|...++-.+....|-+.+-+.+-.....+..|+..+.++.+-|+-+.+++-.
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd 185 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGD 185 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCc
Confidence 44555566666666666666666655555556666677777777777788888888888888888888777654
Q ss_pred ---------------hHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 495 ---------------FRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 495 ---------------l~aErDaAq~E~--n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
+.-|-..+.-.+ .--+.|.|+|+-|-..|.++|..|+
T Consensus 186 ~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk 239 (302)
T PF09738_consen 186 TSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLK 239 (302)
T ss_pred cccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333332222 2236799999999999988888775
No 310
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.78 E-value=51 Score=39.80 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 443 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 443 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
+++|+++......+-+.|..+-+++...+.+.+.+++++++|+
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~ 541 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQ 541 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 311
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.33 E-value=29 Score=36.00 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 543 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 543 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
.|..+++-.+.+-..+....++++.+..+|+.|+..++..||++
T Consensus 130 ~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~l 173 (192)
T PF11180_consen 130 RLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQL 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555556667777777777777777777643
No 312
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=78.29 E-value=1.6e+02 Score=35.42 Aligned_cols=120 Identities=25% Similarity=0.284 Sum_probs=73.1
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 454 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE----LESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 529 (776)
Q Consensus 454 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~----le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq 529 (776)
-+++..+.++-=+-...|..|+..++--+.++-.+... +....+|+-.+-.++..|.-|+..|+.|+..|.+++..
T Consensus 188 ~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 188 KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555544444445555555555444444444433 66668889899999999999999999999999887765
Q ss_pred HHhHh----------------------hhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 530 LRSNE----------------------LKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 530 LRS~e----------------------LKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
.-+.. .++.++++. +.+|+..-..+++.++++=-..+++|+.|.
T Consensus 268 ~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 268 ANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELK 337 (629)
T ss_pred hhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 112233332 445555666666666666556666666554
No 313
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.25 E-value=1e+02 Score=32.97 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.5
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 415 STKHNEDFAALEQHIEDLTQEKFALQRSLEA 445 (776)
Q Consensus 415 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~ 445 (776)
=+..+.+|..+..+++-|.+-==.+.|-++|
T Consensus 46 v~~~d~eF~e~~ey~d~l~~~l~~ieki~~R 76 (240)
T cd07667 46 LRSRPLEFAAIGDYLDTFALKLGTIDRIAQR 76 (240)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567889999999998886543333333333
No 314
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.04 E-value=1.7e+02 Score=35.64 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=78.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh---
Q 004063 433 TQEKFALQRSL-EASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--- 505 (776)
Q Consensus 433 T~EKfaLqR~L-~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E--- 505 (776)
-++++.++|+- -.++...+..-..|..+++-|=-|.. +-..+++++|+.+++.++-...-..+..|-..+.++
T Consensus 79 kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~ 158 (716)
T KOG4593|consen 79 KRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGT 158 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555543 34566667777788888876554443 334567788888877777777766666665555544
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 506 -CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 506 -~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
.+++++++-.+++||-..+.++.++-+.--+.+|++...+
T Consensus 159 lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~ 199 (716)
T KOG4593|consen 159 LRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQH 199 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999988777767666665533
No 315
>PRK12704 phosphodiesterase; Provisional
Probab=77.97 E-value=1.4e+02 Score=34.64 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=5.3
Q ss_pred cccCCCCCCCCC
Q 004063 633 PRIDASGSTLLP 644 (776)
Q Consensus 633 qe~~vs~~p~~P 644 (776)
++..+.|..++|
T Consensus 270 l~~l~~dg~i~P 281 (520)
T PRK12704 270 LEKLVQDGRIHP 281 (520)
T ss_pred HHHHHhcCCcCC
Confidence 334444444444
No 316
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=77.80 E-value=1.8e+02 Score=36.29 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 004063 423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 481 (776)
Q Consensus 423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 481 (776)
..|...++.+.-.++-.+|+-.+..++.--+ .-.+.--.+-=++...+..-|+++|++
T Consensus 526 ~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~-~~v~~E~krilaRk~liE~rKe~~E~~ 583 (988)
T KOG2072|consen 526 ESLSKVVEELDPVIIRNSRAKKKEGAVTNYL-KNVDKEHKRILARKSLIEKRKEDLEKQ 583 (988)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3577777888888888877766665554322 222233333344555555555555554
No 317
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.73 E-value=70 Score=36.27 Aligned_cols=102 Identities=23% Similarity=0.348 Sum_probs=57.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhH
Q 004063 459 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 538 (776)
Q Consensus 459 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKle 538 (776)
++-+..++-......|..+++.|+.+ +..|+.-..+.+.+.+.|... ||+++..+ .+|- +
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~----------~~~e~~~~~~~LqEEr~R~er-------LEeqlNd~--~elH-q 275 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQ----------YQREYQFILEALQEERYRYER-------LEEQLNDL--TELH-Q 275 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHH-------HHHHHHHH--HHHH-H
Confidence 33333444445555666666666654 233444444444444444443 55555555 3342 5
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHhhh-hHHHHHHHHHHHHHHHH
Q 004063 539 RQLENSQSEISSYKKKISSLEKERQ-DFQSTIEALQEEKKMMQ 580 (776)
Q Consensus 539 KElE~l~~Er~S~~~q~ssi~kER~-~l~stIdaLQEEKklLq 580 (776)
.|+.+|+.|+...+.++.=..-||- +++..||.+|+-...|+
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6777888888777766554445552 46777778877665555
No 318
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=77.53 E-value=1.8e+02 Score=35.58 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---HhhhhHHHhhhhHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS---NELKLERQLENSQS 546 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS---~eLKleKElE~l~~ 546 (776)
.++.|+.+++.|+..+.......+....|...++.|..--.++......+...--.-+.+||. +.+=.+.....-.-
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~ 242 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEP 242 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHH
Confidence 444555555555555555555455555555555555555444444444443332222333332 11111111222345
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH--hhccCCCc
Q 004063 547 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR--KASGSGKS 592 (776)
Q Consensus 547 Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR--~asa~gKa 592 (776)
|+..+...+.-+.+||+.|+.|++=||--...|.--|. .-....|+
T Consensus 243 Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kv 290 (739)
T PF07111_consen 243 EREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKV 290 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66777788888889999999999999988877776655 33444455
No 319
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=77.47 E-value=1.7e+02 Score=35.17 Aligned_cols=84 Identities=24% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 527 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~ 527 (776)
+.-+-|..++..|-++--+--..++..-..++.|+.+..-|...++.-+.+++-.|++..++.+-+.....||-+.-...
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al 493 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTAL 493 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566655543333444555555567778888888888888899999888888777664444333433333333
Q ss_pred HHHH
Q 004063 528 LRLR 531 (776)
Q Consensus 528 lqLR 531 (776)
.+|+
T Consensus 494 ~el~ 497 (607)
T KOG0240|consen 494 EELA 497 (607)
T ss_pred HHHH
Confidence 3333
No 320
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=77.31 E-value=73 Score=30.92 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=26.9
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 004063 556 SSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 593 (776)
Q Consensus 556 ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~ 593 (776)
..+.+|-.+|.-++--|.+-.+....||| ..|..+.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk--~LG~eVS 115 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLK--ELGEEVS 115 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHH--HcCCCcc
Confidence 34567778888888888888888889999 4444553
No 321
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.24 E-value=76 Score=31.08 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=71.6
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
++|--||..+..+.-+....+..|+.. +..-.-.|..++.-......++............++..+.+++.++
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~-------~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKK-------IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888766665555555544 4444455555565555666666666666666666666666666666
Q ss_pred HhHhhhhHHHhhhhHHHHHHHH-----HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 531 RSNELKLERQLENSQSEISSYK-----KKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 531 RS~eLKleKElE~l~~Er~S~~-----~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+...-|++++..+++..-.-+. .-|.....+-..++..|..|+...+.|+-+++
T Consensus 118 k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 118 KKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666666554433221 11222222333444555555555555555443
No 322
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=76.98 E-value=75 Score=30.85 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004063 441 RSLEASRALSESLAAENSSL-TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 496 (776)
Q Consensus 441 R~L~~s~~l~EsLa~ENsaL-t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 496 (776)
-.++..+.++..+..-+..+ .+.||........|+.+++.|+....+....++...
T Consensus 5 ~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 61 (136)
T PF04871_consen 5 SELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELA 61 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655555555 566666666666666666666654443333333333
No 323
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.92 E-value=20 Score=38.50 Aligned_cols=39 Identities=31% Similarity=0.305 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
.+.+..|....+.++++-++|.|.|.-|--.||++..+|
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555566777888888888888888877655
No 324
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=76.68 E-value=73 Score=38.58 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFAL 439 (776)
Q Consensus 424 aLqqhIeDLT~EKfaL 439 (776)
.++..|++|.+++..+
T Consensus 517 ~~~~li~~l~~~~~~~ 532 (782)
T PRK00409 517 KLNELIASLEELEREL 532 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 325
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.48 E-value=78 Score=36.40 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=25.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Q 004063 462 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 511 (776)
Q Consensus 462 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~E 511 (776)
..|..-...+.+....++.+..++..+...++.=..+++..+.+......
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 34445555555555566666666666655554334444444444443333
No 326
>PRK11519 tyrosine kinase; Provisional
Probab=76.42 E-value=1.1e+02 Score=36.37 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=5.0
Q ss_pred CCCCcccccccC
Q 004063 194 PQNSVSTLFQSK 205 (776)
Q Consensus 194 ~q~s~~~~~q~~ 205 (776)
|.=.+++..|++
T Consensus 54 PvY~a~a~l~Ie 65 (719)
T PRK11519 54 PIYSADALVQIE 65 (719)
T ss_pred ceeeeeEEEEEc
Confidence 333444444433
No 327
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.17 E-value=2.1e+02 Score=35.51 Aligned_cols=11 Identities=18% Similarity=-0.009 Sum_probs=5.3
Q ss_pred CCccccCCCCc
Q 004063 207 SNAIALGNGHS 217 (776)
Q Consensus 207 sn~~~~~~g~s 217 (776)
-++|.-.||+|
T Consensus 28 l~~I~G~nGaG 38 (1042)
T TIGR00618 28 IFLICGKTGAG 38 (1042)
T ss_pred eEEEECCCCCC
Confidence 34454555544
No 328
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=76.06 E-value=60 Score=30.69 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=59.0
Q ss_pred ccccccccCCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063 408 ENQHGFYSTKHNED----FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 483 (776)
Q Consensus 408 e~~~~F~s~~~~~~----faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 483 (776)
-+|+.|.+..+..- -...+.-.+++..+.-.+.=.+.+++-+++.-..|-+.....+-+--..+.+++.+|+.|+.
T Consensus 23 k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~ 102 (139)
T PF05615_consen 23 KRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKE 102 (139)
T ss_pred HHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554443210 13345556777778888888888888888877777666666666666667778888888887
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 004063 484 EIKVQLVELESFRNEYANV 502 (776)
Q Consensus 484 Ei~aQ~~~le~l~aErDaA 502 (776)
++..-...+.. +.|||+.
T Consensus 103 ~L~~ak~~r~~-k~eyd~L 120 (139)
T PF05615_consen 103 ELEEAKRVRQN-KEEYDAL 120 (139)
T ss_pred HHHHHHHHHHH-HHHHHHH
Confidence 76554444433 3355553
No 329
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=75.84 E-value=56 Score=39.07 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 449 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 449 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
=++.|--||+.|-+.-|+.--+-+-|--++.+|--| ...|+.|..++++---+-.||.+.|.-|+-.+-.++.
T Consensus 302 EVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E-------~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 302 EVENLILENSQLLETKNALNIVKNDLIAKVDELTCE-------KDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999998888776666666666555443 2455666666666655555555554444444444433
Q ss_pred HH
Q 004063 529 RL 530 (776)
Q Consensus 529 qL 530 (776)
..
T Consensus 375 ~a 376 (832)
T KOG2077|consen 375 DA 376 (832)
T ss_pred HH
Confidence 33
No 330
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=75.82 E-value=72 Score=30.07 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
.|+.-|.-....-+..+.+=..+...+......+.+|......+++.
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~ 52 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQ 52 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443344444445555555555444444443
No 331
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.75 E-value=1.3e+02 Score=32.84 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHh
Q 004063 429 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ---LVELESFRNEYANVRLE 505 (776)
Q Consensus 429 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ---~~~le~l~aErDaAq~E 505 (776)
|..-..+=-.++-.+...+.=.++|-..-+.+...-+.....+.+++.+|++|+.+|+.= ..++..+=.+|.+|-+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555677788888888888999999999999999999999999999999988753 44445555566655543
No 332
>PF14992 TMCO5: TMCO5 family
Probab=75.68 E-value=40 Score=36.71 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHH---HHHh------
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE--IKVQ---LVEL------ 492 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E--i~aQ---~~~l------ 492 (776)
.|=|-|++--.....|.|.+.+...+++.--++|.-. .|.|.+. .+|.-+-.+|+.+ +-++ -+-.
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~---~~~e~~l-~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS---EERETDL-QELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh---hchHHHH-HHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 3445666666667777888877777777776666555 4555553 3333333333322 2110 0000
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
-.+.-|..++.+..+....+.+.+..+++.+|.++....+
T Consensus 98 ~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 98 TNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred CCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0123344455555555556666666666666666665543
No 333
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.65 E-value=17 Score=38.48 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=21.5
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 452 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
+|-.+-..+...+.+|...+..|..|++.++..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555566666666777777777777766655
No 334
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.63 E-value=1.7e+02 Score=34.20 Aligned_cols=62 Identities=32% Similarity=0.387 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhH-HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 523 LEEKALRLRSNELKLERQLENSQ-SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~-~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
|-.++.+||-.+++++--++..+ .-+...-++++-++.+-..-+.+++.|.-|+-.|..+|-
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlE 196 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLE 196 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHH
Confidence 45577889989999888888776 666777777777776666666666666666655555544
No 335
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=75.48 E-value=39 Score=32.08 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
|+.+.+.++..|-.=|+.=+.+...| ..+|..--.+++.+..++.++.=--++|.+-|+.||+|+.....+-.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L-------~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~~~ 78 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAEL-------KEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQKSK 78 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45566677777777776555555544 33444444566677777777777788999999999999996655544
Q ss_pred h
Q 004063 585 K 585 (776)
Q Consensus 585 ~ 585 (776)
+
T Consensus 79 k 79 (102)
T PF10205_consen 79 K 79 (102)
T ss_pred c
Confidence 3
No 336
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=75.32 E-value=75 Score=30.06 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063 475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNA------ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 548 (776)
Q Consensus 475 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~------A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er 548 (776)
+..+.+.++.+......|..+...++.++..+.. .-...+....=+..|.+.|.+. .+.+..+..++
T Consensus 22 ~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q-------~~~v~~~~~~v 94 (146)
T PRK07720 22 LGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHY-------QLLVMQAREQM 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3334444444444444444444444444444333 1223344455556666666544 34555666666
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 582 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK 582 (776)
+..+..+....++|..+.+.+++-..+-...+.|
T Consensus 95 e~~r~~~~ea~~~~k~~ekLker~~~~~~~~e~r 128 (146)
T PRK07720 95 NRKQQDLTEKNIEVKKYEKMKEKKQEMFALEEKA 128 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777666555444443
No 337
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=75.10 E-value=23 Score=30.75 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 582 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK 582 (776)
.+.+++...++-...|...|++|.+|.+.++++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 445556666666778888889999888877653
No 338
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.04 E-value=1.1e+02 Score=31.68 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQ 466 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNq 466 (776)
.|..++..-...++.+|..+..|..+-+.
T Consensus 57 t~~~~w~~i~~~~e~~a~~H~~l~~~L~~ 85 (261)
T cd07648 57 TFAPLWLVLRVSTEKLSELHLQLVQKLQE 85 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677777777777777666643
No 339
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=75.02 E-value=9.7 Score=35.00 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
.|++|..++..|...+..-..+...+++.-++|+.|++.|.+|.-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555554455566778888888888888888854
No 340
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.93 E-value=1.1e+02 Score=31.58 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 503 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 503 (776)
.++.+++-+...+-.+...|.++++.=+....|.+.+...|..+..-+ -+.++|+++.-+.--.......+.+|..+.
T Consensus 103 ~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~--~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v 180 (239)
T cd07647 103 KTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGA--QPKEAEKLKKKAAQCKTSAEEADSAYKSSI 180 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666666666666666655555444322 134555555544444444445555666655
Q ss_pred HhhhHHH
Q 004063 504 LECNAAD 510 (776)
Q Consensus 504 ~E~n~A~ 510 (776)
..++.+.
T Consensus 181 ~~l~~~~ 187 (239)
T cd07647 181 GCLEDAR 187 (239)
T ss_pred HHHHHHH
Confidence 5555554
No 341
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.54 E-value=24 Score=31.09 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 514 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 514 K~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
+.|+.-|..|=..|.+||..--.+.-++..+.. ||.+++.-++.-..-.+.+-++|+.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~--------------ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWRE--------------ERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345555555555555555555544444444444 4555544444444445555555553
No 342
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=74.52 E-value=70 Score=29.31 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Q 004063 478 MEKLQEEIKVQLVELESFRNEYANVRLECNAA 509 (776)
Q Consensus 478 mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A 509 (776)
+.+|...|..|...++.+..+.+.++...-+|
T Consensus 70 ~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a 101 (141)
T TIGR02473 70 IRQLDQRIQQQQQELALLQQEVEAKRERLLEA 101 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444434333444433333333333333
No 343
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=74.40 E-value=24 Score=38.05 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh
Q 004063 478 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 557 (776)
Q Consensus 478 mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ss 557 (776)
+--|-.|-++|+-+|.+ |-+||.....-.+|..++.-||+.|+|+-.+|+ .|-++++++-..
T Consensus 61 L~HLS~EEK~~RrKLKN----RVAAQtaRDrKKaRm~eme~~i~dL~een~~L~--------------~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKN----RVAAQTARDRKKARMEEMEYEIKDLTEENEILQ--------------NENDSLRAINES 122 (292)
T ss_pred hcccCHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 33345666777777765 567788888888889999999999998876553 344567777888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 004063 558 LEKERQDFQSTIEALQEEKKMMQSK 582 (776)
Q Consensus 558 i~kER~~l~stIdaLQEEKklLqSK 582 (776)
++.+-+++.+.++-|.+|+..+...
T Consensus 123 L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 123 LLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 8888889999999998888766443
No 344
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.22 E-value=20 Score=32.48 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 474 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qL 474 (776)
-++-||=.|++|.+++-.|+...+-++.--|.|..||+.|...-+.=...+-.|
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777766654443333333333
No 345
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.17 E-value=24 Score=40.82 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=12.1
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHH
Q 004063 554 KISSLEKERQDFQSTIEALQEEKK 577 (776)
Q Consensus 554 q~ssi~kER~~l~stIdaLQEEKk 577 (776)
+.+.+..+|++++..|+.||..++
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334445555556666655443
No 346
>PRK01156 chromosome segregation protein; Provisional
Probab=73.81 E-value=2.1e+02 Score=34.48 Aligned_cols=12 Identities=33% Similarity=0.196 Sum_probs=7.6
Q ss_pred CCccccCCCCcc
Q 004063 207 SNAIALGNGHSF 218 (776)
Q Consensus 207 sn~~~~~~g~s~ 218 (776)
-|+|.-.||.|=
T Consensus 25 i~~I~G~NGsGK 36 (895)
T PRK01156 25 INIITGKNGAGK 36 (895)
T ss_pred eEEEECCCCCCH
Confidence 466666677664
No 347
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=73.55 E-value=76 Score=36.62 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 520 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEV 520 (776)
.+..|.+.+++++.+|......- ..||......+....+|.+.|+.|+
T Consensus 15 ~I~~L~~~i~~~k~eV~~~I~~~---y~df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 15 SISRLSRRIEELKEEVHSMINKK---YSDFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444443322221 1244444455555555555555555
No 348
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=73.32 E-value=83 Score=34.75 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
..+.++..+-.++....|.+--+...+|+-+.|.+++++.+..+.+-|-..-.+.+.+.||++.|..
T Consensus 116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~ 182 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ 182 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666677777777788888888888888888888888888888766543
No 349
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=73.29 E-value=1.7e+02 Score=33.15 Aligned_cols=166 Identities=18% Similarity=0.237 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALS-ESLAAENSSLTDSYNQQRSVV--------NQLKSEMEKLQEEIKVQL 489 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~-EsLa~ENsaLt~~yNqQ~~~v--------~qLk~~mE~Lq~Ei~aQ~ 489 (776)
.+.+.-+++|||-.-+.|- |.--+-+++-+. ..|++.-+.+..+-|+-|-.- .+++..=-+|++++.
T Consensus 150 ~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~--- 225 (391)
T KOG1850|consen 150 GEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLA--- 225 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3567788999998887776 777666555443 345556666666666554332 222222223333332
Q ss_pred HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHHHHHHHHHhHHHhh
Q 004063 490 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL-------KLERQLENSQSEISSYKKKISSLEKER 562 (776)
Q Consensus 490 ~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL-------KleKElE~l~~Er~S~~~q~ssi~kER 562 (776)
-.++-|+--+.-+.+..|=--.+-.|+..+-.+|.++--.-| ++-+-+-.+..|..-+.++|..+.+-=
T Consensus 226 ----lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~ki 301 (391)
T KOG1850|consen 226 ----LYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKI 301 (391)
T ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 234445555555555566566666777766666665432222 222333335555555666777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 004063 563 QDFQSTIEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 563 ~~l~stIdaLQEEKklLqSKLR~asa~gKa 592 (776)
+.|.+..-|||.|...|..+++-+.+++-+
T Consensus 302 q~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 302 QRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 788889999999999999999966665443
No 350
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=73.28 E-value=35 Score=39.91 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 575 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE 575 (776)
..|+-..+.....-.|.-+.+++|+-..++.+. |+++++..+--.+.-+++++.+.+++|..+.-..|+|...
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~-------Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~ 99 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLA-------KAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQ 99 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345555555566666777778888887777665 5667777777777777888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 004063 576 KKMMQSKLRK 585 (776)
Q Consensus 576 KklLqSKLR~ 585 (776)
.+++.-.|+.
T Consensus 100 i~~i~d~l~~ 109 (604)
T KOG3564|consen 100 IQLIKDMLKC 109 (604)
T ss_pred HHHHHHHHhc
Confidence 8877777773
No 351
>PRK02119 hypothetical protein; Provisional
Probab=73.24 E-value=29 Score=30.59 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 004063 566 QSTIEALQEEKKMMQSKLRKASGS 589 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~asa~ 589 (776)
+..|++|+.+.++|..||+....+
T Consensus 36 q~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 467899999999999999976543
No 352
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=73.23 E-value=26 Score=30.78 Aligned_cols=25 Identities=4% Similarity=0.003 Sum_probs=9.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q 004063 500 ANVRLECNAADERAKILASEVIGLE 524 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LE 524 (776)
+.....|..-.+-+..|-.++..++
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333333
No 353
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.21 E-value=1.3e+02 Score=35.62 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHH
Q 004063 450 SESLAAENSSLTDSYNQQRSVVNQLK 475 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk 475 (776)
.+-+.+|+--|+..||+...+.+-++
T Consensus 233 lq~~~~ehkllee~~~rl~~~~s~Ve 258 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQLSDVE 258 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45556666666666666655554433
No 354
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.11 E-value=51 Score=39.59 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 004063 428 HIEDLTQEKFALQRSLEASRALSES----------------------------LAAENSSLTDSYNQQRSVVNQLKSEME 479 (776)
Q Consensus 428 hIeDLT~EKfaLqR~L~~s~~l~Es----------------------------La~ENsaLt~~yNqQ~~~v~qLk~~mE 479 (776)
-+|+.+..|-.|+..++..++-... |...-+-|+.+||+...+..++..+++
T Consensus 55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 55 KVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776654433 344456788889999999999999999
Q ss_pred HHHHHHHHH-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004063 480 KLQEEIKVQ-LVELESFRNEYANVRLECNAADERAKILASEVI 521 (776)
Q Consensus 480 ~Lq~Ei~aQ-~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV 521 (776)
+|-.+|..+ .+...-+..|.|=....+++=+++.+.|+.|-+
T Consensus 135 ~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~ 177 (660)
T KOG4302|consen 135 KLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKS 177 (660)
T ss_pred HHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 999988887 111111123333333344444444444444433
No 355
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=73.04 E-value=1.3e+02 Score=31.68 Aligned_cols=117 Identities=12% Similarity=0.265 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004063 456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 534 (776)
Q Consensus 456 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e 534 (776)
++..|.+-+.+-+ ++...+..+.++...| .+.+...-.||-+....+..|-.+=..+=.....++..+.+.|...
T Consensus 74 ~~~~ls~~l~~la----ev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~ 149 (234)
T cd07664 74 DHTALSRALSQLA----EVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAE 149 (234)
T ss_pred ccchHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444 4444444444433333 3456666778888888887776554455555667777777777776
Q ss_pred hhhHH-----HhhhhHHHHHHHHHHHHhHHHhhhh----HHHHHHHHHHHH
Q 004063 535 LKLER-----QLENSQSEISSYKKKISSLEKERQD----FQSTIEALQEEK 576 (776)
Q Consensus 535 LKleK-----ElE~l~~Er~S~~~q~ssi~kER~~----l~stIdaLQEEK 576 (776)
-|+.. -+..++.|+..+++++..+.++-.. +..+|++.++||
T Consensus 150 ~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er 200 (234)
T cd07664 150 AKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKER 200 (234)
T ss_pred HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66632 3445666666666666666555444 445666676665
No 356
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.64 E-value=1.8e+02 Score=33.13 Aligned_cols=100 Identities=22% Similarity=0.338 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQ---RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLq---R~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
-||..|..+|+.--.|- ..++.-|.=+++|-.-|+.|...-=+-+++...-|.++-+|+.=+.-..-+...+..-.+
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47777888876544332 234444555677888888877666666666666666666666666555556667777788
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 004063 501 NVRLECNAADERAKILASEVIGL 523 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~L 523 (776)
++.++|.+-.|+++.|-.|..+.
T Consensus 152 ~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHH
Confidence 88899999999999888776543
No 357
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.53 E-value=80 Score=29.08 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
..+..++..++.....+.+.++.|++..+.++.+||.+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666667777777777777778777765
No 358
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=72.45 E-value=97 Score=37.56 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=7.5
Q ss_pred cccccceeEeecCCC
Q 004063 15 HHLEADRVRVTDLDG 29 (776)
Q Consensus 15 ~~le~~~vr~~d~dg 29 (776)
..|+.++-++.|.+|
T Consensus 124 ~~l~~~i~~~id~~g 138 (771)
T TIGR01069 124 PPLENDIIACIDDDG 138 (771)
T ss_pred HHHHHHHHHHhCCCC
Confidence 334455555555544
No 359
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=72.27 E-value=1.3e+02 Score=31.23 Aligned_cols=77 Identities=26% Similarity=0.270 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASE--------------VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaE--------------VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
+-++-=..+|..|.+.+-|+--.|..| ...||.+|.+|...+-.++.-+..|- .++.-=
T Consensus 81 eyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE-------~KL~eE 153 (178)
T PF14073_consen 81 EYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELE-------EKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 333434444555556666665555555 45677888888777776666544433 333333
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 004063 559 EKERQDFQSTIEALQEEK 576 (776)
Q Consensus 559 ~kER~~l~stIdaLQEEK 576 (776)
+-.|--|+..-..||++.
T Consensus 154 ehqRKlvQdkAaqLQt~l 171 (178)
T PF14073_consen 154 EHQRKLVQDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 444555555556666554
No 360
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=72.14 E-value=1.2e+02 Score=31.15 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 549 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~ 549 (776)
++.--+--|++|++|+..-..++......+..++.-++.|..-++....++..|..-+...|.+.-..+.-.++...|+.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567889999998888899999999999999999999999999999999999888888887777777777765544
Q ss_pred H
Q 004063 550 S 550 (776)
Q Consensus 550 S 550 (776)
.
T Consensus 141 e 141 (188)
T PF05335_consen 141 E 141 (188)
T ss_pred H
Confidence 4
No 361
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=72.05 E-value=1.5e+02 Score=31.95 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=34.3
Q ss_pred HHhhhhHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh
Q 004063 490 VELESFRNEYANVRLECNAADE-------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 562 (776)
Q Consensus 490 ~~le~l~aErDaAq~E~n~A~E-------RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER 562 (776)
..+..+..++..++.++.++.. +.+.|..++..|+.++.+.+..-+.. ..........+|..++.|+
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~------~~~~l~~~~~~~~~L~re~ 287 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGG------LGDSLNEQTADYQRLVLQN 287 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcC------CCccHHHHHHHHHHHHHHH
Confidence 3344445555555555444433 33444555555555554433222110 1112333444555555555
Q ss_pred hhHHHHHHHHHH
Q 004063 563 QDFQSTIEALQE 574 (776)
Q Consensus 563 ~~l~stIdaLQE 574 (776)
.-.+...+.+..
T Consensus 288 ~~a~~~y~~~l~ 299 (362)
T TIGR01010 288 ELAQQQLKAALT 299 (362)
T ss_pred HHHHHHHHHHHH
Confidence 554444444433
No 362
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=71.99 E-value=97 Score=29.85 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 004063 473 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 552 (776)
Q Consensus 473 qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~ 552 (776)
+--+++..++.-+..-...++.+..+.++.++.+=-++-+.+..+.+...-...+ +-.+..-+.|.++|+
T Consensus 31 ~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~l----------q~~I~Ek~~eLERl~ 100 (120)
T PF14931_consen 31 EFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQL----------QALIAEKKMELERLR 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 3334455555555555555566666666666666566555555543332221111 112223345556677
Q ss_pred HHHHhHHHhhhh
Q 004063 553 KKISSLEKERQD 564 (776)
Q Consensus 553 ~q~ssi~kER~~ 564 (776)
.+|+++++--.+
T Consensus 101 ~E~~sL~kve~e 112 (120)
T PF14931_consen 101 SEYESLQKVEQE 112 (120)
T ss_pred HHHHHHHHHHHH
Confidence 777766554433
No 363
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.88 E-value=1.3e+02 Score=31.21 Aligned_cols=50 Identities=28% Similarity=0.354 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHhh
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--------ENSSLTDSYNQQR 468 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~--------ENsaLt~~yNqQ~ 468 (776)
.+.+..||+|..+|-..=-+|-|..++-+.-...||. ||..|.+-+-.-+
T Consensus 10 ~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 10 QERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4678899999999999888898888888877777765 4555554444444
No 364
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=71.85 E-value=1.7e+02 Score=32.63 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLE-----------ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 490 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~-----------~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 490 (776)
.+.|+.+|..|..|=..+.|+.. .+++....|...-..+-.+-.+--..|.++.+++.+
T Consensus 27 i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~---------- 96 (383)
T PF04100_consen 27 IAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ---------- 96 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 35566666666666555555443 344444555555555555555555556666666644
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063 491 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570 (776)
Q Consensus 491 ~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 570 (776)
.|.|..-++..+-=.|.|++=|..++.=-.-+....-+---.+=....++..+.+.|.+| ..|.
T Consensus 97 --------LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi--------~~I~ 160 (383)
T PF04100_consen 97 --------LDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSI--------PQIA 160 (383)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCc--------HHHH
Confidence 477888888887777777765544432111111111211112223455666777777765 4555
Q ss_pred HHHHHHHHHHHHHH
Q 004063 571 ALQEEKKMMQSKLR 584 (776)
Q Consensus 571 aLQEEKklLqSKLR 584 (776)
.|..+...++.+|+
T Consensus 161 ~L~~~i~~l~~~L~ 174 (383)
T PF04100_consen 161 ELSKRIDQLQNELK 174 (383)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666666655
No 365
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.77 E-value=1.6e+02 Score=32.14 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 493 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le 493 (776)
...=+.-|.+++.++-.+|-.|+.=..=++.+-..-..+..++++-...+.+|+.+++.+++.|..+.-.|+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999999999999999999999999999999999999998877665554
No 366
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=71.54 E-value=83 Score=34.19 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ------RSVVNQLKSEMEKLQEEIKVQLVEL 492 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ------~~~v~qLk~~mE~Lq~Ei~aQ~~~l 492 (776)
......|++-++||.+-|-.-..-|+...++-+.=+.|.+.+-.+|-.+ ...-..|..++.+++.-++.-...-
T Consensus 71 ~gG~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD 150 (339)
T cd09238 71 SGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSD 150 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4557889999999999999999999999999998899999998888552 2233467777777766555444444
Q ss_pred hhhHHHHH
Q 004063 493 ESFRNEYA 500 (776)
Q Consensus 493 e~l~aErD 500 (776)
..++.-|.
T Consensus 151 ~~v~~k~~ 158 (339)
T cd09238 151 ESLRRRIE 158 (339)
T ss_pred HHHHHHHH
Confidence 44444333
No 367
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.50 E-value=27 Score=31.98 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 478 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m 478 (776)
|.++-||--|++|-+++..|....+.++.--+.|..||..|...-|.=-..+..|=..|
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777777777777777777777666666555555555554
No 368
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.45 E-value=2.2e+02 Score=33.74 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKSEM-------EKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~m-------E~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
++|-..--+|+++-|---+.|+++|.++ ++|+.||.--..+++++++-+|.
T Consensus 298 ~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~ 355 (622)
T COG5185 298 KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDE 355 (622)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455555667777777667777766654 34444444444444444444443
No 369
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.34 E-value=2e+02 Score=33.08 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004063 422 FAALE----QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 464 (776)
Q Consensus 422 faaLq----qhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~y 464 (776)
.+|+| ++|.||..++-+--|.-+.--.++--|..|-+-|+.+.
T Consensus 109 LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 109 LAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHH
Confidence 45555 67889988887777666666677777777777776654
No 370
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.25 E-value=30 Score=29.82 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 004063 463 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 516 (776)
Q Consensus 463 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~L 516 (776)
+.++....|.+|..++.+|.++|. .++.|..+|+.|+..|.+|.--.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~-------~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN-------ALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666777777777777654 45555566666666676665433
No 371
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.13 E-value=1.1e+02 Score=30.95 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
...+++..+++|+.+++.-...++.+..+.+.+..+...-.+|.+
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~ 107 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE 107 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 345666777777777777777777777777766665555555544
No 372
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=70.92 E-value=90 Score=29.02 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=6.1
Q ss_pred hHHHHHHHHHhhhHHH
Q 004063 495 FRNEYANVRLECNAAD 510 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ 510 (776)
+..++-.+..+|+.+.
T Consensus 93 L~~~f~~~m~~fq~~Q 108 (151)
T cd00179 93 LSKKFVEVMTEFNKAQ 108 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 373
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=70.80 E-value=46 Score=34.76 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
....++.|++-+..-|......|.++++-=+....|-..+...+|.+...+. .++++.++.-+.--...++.-..+|.
T Consensus 101 ~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~--~ke~~K~~~Kl~K~~~~~~k~~~~Y~ 178 (240)
T cd07672 101 ARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVN--VKQQEKLFAKLAQSKQNAEDADRLYM 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888888888888888887876543222 22333333333222233444555666
Q ss_pred HHHHhhhHHHH
Q 004063 501 NVRLECNAADE 511 (776)
Q Consensus 501 aAq~E~n~A~E 511 (776)
.+...++..+.
T Consensus 179 ~~v~~l~~~~~ 189 (240)
T cd07672 179 QNISVLDKIRE 189 (240)
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 374
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=70.68 E-value=1.4e+02 Score=36.70 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHHH----HHHHHHHhhhHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHh-----hhhHHHHH
Q 004063 434 QEKFALQR-SLEASRA----LSESLAAENSSLTDSYNQQRSVVN---QLKSEMEKLQEEIKVQLVEL-----ESFRNEYA 500 (776)
Q Consensus 434 ~EKfaLqR-~L~~s~~----l~EsLa~ENsaLt~~yNqQ~~~v~---qLk~~mE~Lq~Ei~aQ~~~l-----e~l~aErD 500 (776)
++||.++| .+.++.. +.--|-+.-+.|.+-||+.-..+- .||.+|+.|+.+++|+.+.- +.|+.|..
T Consensus 485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~ 564 (762)
T PLN03229 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEIN 564 (762)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHH
Q ss_pred HHHHh---hhHHHHHHHHHHHHHH------------HHHHHHHHHHh------------------HhhhhHHHh------
Q 004063 501 NVRLE---CNAADERAKILASEVI------------GLEEKALRLRS------------------NELKLERQL------ 541 (776)
Q Consensus 501 aAq~E---~n~A~ERaK~LAaEVV------------~LEek~lqLRS------------------~eLKleKEl------ 541 (776)
-=..+ ..+-.+....+-+||. .|-++|.+++- ..+|.+...
T Consensus 565 kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~ 644 (762)
T PLN03229 565 KKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPP 644 (762)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCC
Q ss_pred hhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 542 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 542 E~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
..++.+++.+++++.--..+-=. -+.|..+.|++|+
T Consensus 645 ~~~k~KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~ 680 (762)
T PLN03229 645 PNLQEKIESLNEEINKKIERVIR-SSDLKSKIELLKL 680 (762)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHH
No 375
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.57 E-value=1.2e+02 Score=36.79 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=8.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 004063 460 LTDSYNQQRSVVNQLKSEMEKL 481 (776)
Q Consensus 460 Lt~~yNqQ~~~v~qLk~~mE~L 481 (776)
|..+-+++...+.+.+++++++
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~ 542 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEAL 542 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 376
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.55 E-value=1.1e+02 Score=37.63 Aligned_cols=63 Identities=29% Similarity=0.455 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 456 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
++--+.+.-|.....+.+++++.++|.. +++..|+.-+.+|.. +..+.+..-..+||++-..+
T Consensus 535 ~~~~~~~~l~~kke~i~q~re~~~~~~k---------~~l~~e~~~~i~E~~---~~~~~i~~l~~el~eq~~~~ 597 (809)
T KOG0247|consen 535 ESQMLSSQLNDKKEQIEQLRDEIERLKK---------ENLTTEYSIEILEST---EYEEEIEALDQELEEQKMEL 597 (809)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhh---------hhhhhhhhhhhhhcc---hhhhhhHHHHHHHHhhhHHH
Confidence 3344455555555566666666655555 577788887777766 55556666666666654433
No 377
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=70.34 E-value=1.2e+02 Score=31.85 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
-..++.+++.+-..+..+...|.++++-=+....+-+++...+|.-.+..+--++++++++..+..-...+...+.+|..
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666777777777777777777777776543222222466677776666666666677777777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
+...+|.-.. .--.+|...=+++.
T Consensus 194 ~l~~~n~~~~---~y~~~m~~~~~~~Q 217 (258)
T cd07655 194 ALEDLNKYNP---RYMEDMEQVFDKCQ 217 (258)
T ss_pred HHHHHHhhhH---HHHHHHHHHHHHHH
Confidence 7666655543 24444444433333
No 378
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.23 E-value=28 Score=37.61 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=50.5
Q ss_pred HHHHHHhhhHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004063 450 SESLAAENSSLTDSYNQQR-------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 522 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~-------~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~ 522 (776)
+-.|+.=--|+.. |..-- ..+.+++.+++..+.+++.....|..+..+....+.++.++......|..++..
T Consensus 196 a~~Lc~WV~A~~~-Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 196 AGSLCKWVRAMVK-YYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544445443 44433 444444444555555555555555555555555555555555555566666555
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
.+.++.+. ++=+.+|..|+.+-...+..+
T Consensus 275 ~~~kl~rA-------~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 275 TERKLERA-------EKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHHHHHHH-------HHHHHCCHHHHHCCHCHHHHH
T ss_pred HHhhhccH-------HHHHhhhcchhhhHHHHHHHH
Confidence 55555433 222344555544444444433
No 379
>PRK15396 murein lipoprotein; Provisional
Probab=70.08 E-value=23 Score=32.06 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
.|++|..++..|..++..-......++.+..+|+.|+..|.+|.--
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444555666666677777777777543
No 380
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=69.76 E-value=1e+02 Score=29.18 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 477 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
=+++|.+.|..|...++.+..+.+.++....+|.-+.|.
T Consensus 72 fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~ 110 (146)
T PRK07720 72 FVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKK 110 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333
No 381
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=68.85 E-value=26 Score=30.21 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=22.4
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063 449 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 483 (776)
Q Consensus 449 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 483 (776)
=++.|..+.+.|..+.++....|+.|+.++...++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766666666666666644444
No 382
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.68 E-value=61 Score=30.07 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 466 QQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
..+..+.+|.+.+....+-+..-...++.+ +.+....+.+..+-..+.+.|.+++..+...+.-|
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555666 55566666666666666666666666665444444
No 383
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.65 E-value=2.2e+02 Score=32.54 Aligned_cols=106 Identities=15% Similarity=0.266 Sum_probs=58.3
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHH
Q 004063 415 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI----KVQLV 490 (776)
Q Consensus 415 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----~aQ~~ 490 (776)
.......|.++...+.|+.++...|++.+++-+.- +...|+-....+.+.+-..++|++++ +.++.
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~----------~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~ 276 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQ----------YQREYQFILEALQEERYRYERLEEQLNDLTELHQN 276 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999998888876652 22223333333333333333333322 33344
Q ss_pred HhhhhHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 491 ELESFRNEYANVRLEC-NAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 491 ~le~l~aErDaAq~E~-n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
+..+|+.|...+.-.. =-+.||+|.+.-=|+..+.|+-++
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444444433221111 124677777766666666666655
No 384
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=68.23 E-value=35 Score=39.84 Aligned_cols=15 Identities=7% Similarity=0.423 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEE 484 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~E 484 (776)
.+++++.++++.++.
T Consensus 165 ~~~~~~~~~k~~~~~ 179 (555)
T TIGR03545 165 TAEEIEKSLKAMQQK 179 (555)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 385
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.93 E-value=2.7e+02 Score=33.31 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=8.0
Q ss_pred HHhhHHHHHHHHH
Q 004063 665 MIHNINALISELA 677 (776)
Q Consensus 665 ~IdsInaLisELa 677 (776)
..|+++.|.+.|.
T Consensus 511 ~~Ea~r~lrt~l~ 523 (726)
T PRK09841 511 AVEAVRALRTSLH 523 (726)
T ss_pred HHHHHHHHHHHhh
Confidence 4566666666653
No 386
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.88 E-value=2e+02 Score=31.78 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 506 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~ 506 (776)
|---.+++++=+-.+|+..+.|.++++.-.. -+|...+.++++.|.+|.-.++.++.+++.++...
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~--~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSS--TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567778888888888888888876543 35666666666666666666666666666555443
No 387
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=67.79 E-value=1.4e+02 Score=31.66 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=7.9
Q ss_pred HhhhHHHHHHHHh
Q 004063 455 AENSSLTDSYNQQ 467 (776)
Q Consensus 455 ~ENsaLt~~yNqQ 467 (776)
.+-..+...|+++
T Consensus 155 ~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 155 KELDELEKEYEQE 167 (297)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc
Confidence 3445566677766
No 388
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=67.50 E-value=1.7e+02 Score=30.93 Aligned_cols=80 Identities=33% Similarity=0.411 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHH--------------HHHHHHHhHHHhhh
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNEL-------KLERQLENSQSEIS--------------SYKKKISSLEKERQ 563 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL-------KleKElE~l~~Er~--------------S~~~q~ssi~kER~ 563 (776)
++..|.+|+-.=.+..+.|++.+..+.++-- |+.-..+.+.+++. .+.+.+..|+++|+
T Consensus 96 dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~D 175 (205)
T KOG1003|consen 96 ELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERD 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHH
Confidence 3445566666666667777776665544332 22223333333332 23344445555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004063 564 DFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR 584 (776)
.+...+....++-+-++.-|-
T Consensus 176 dlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 176 DLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 555555555555444444443
No 389
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=66.13 E-value=2.7e+02 Score=32.63 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=7.7
Q ss_pred hhHHHHHhhHHHHH
Q 004063 660 HDQMRMIHNINALI 673 (776)
Q Consensus 660 ~DQlR~IdsInaLi 673 (776)
---|.++..|..+.
T Consensus 346 TTLla~LrtI~~~W 359 (475)
T PRK10361 346 TTLLVALRTIANLW 359 (475)
T ss_pred hHHHHHHHHHHHHH
Confidence 33446666666554
No 390
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.12 E-value=1.1e+02 Score=29.09 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH-------------------HHHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE-------------------ISSYKK 553 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E-------------------r~S~~~ 553 (776)
.++..++.+....+.....+.+.+......|+.+..+. -...+||+.+.++ +..+..
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~----~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~ 78 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREI----NKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKE 78 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHH
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 004063 554 KISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSG 590 (776)
Q Consensus 554 q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~g 590 (776)
++..|..+=..+.+..+.|++..+.++..||.+-.++
T Consensus 79 r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 79 RKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 391
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.03 E-value=2.7e+02 Score=32.70 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQ 473 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~q 473 (776)
..++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+..-+
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~ 262 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFE 262 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3455555555555555555555555555555555555666666666666654443
No 392
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.80 E-value=1.5e+02 Score=29.49 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHhhhH
Q 004063 468 RSVVNQLKSEMEKLQ-EEIKVQLVELESFRNEYANVRLECNA 508 (776)
Q Consensus 468 ~~~v~qLk~~mE~Lq-~Ei~aQ~~~le~l~aErDaAq~E~n~ 508 (776)
...+.+|+.+|..++ .++.......+.++.|.+..++++++
T Consensus 57 ~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 57 KAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665444 33444444555555555555544443
No 393
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=65.78 E-value=50 Score=29.08 Aligned_cols=59 Identities=24% Similarity=0.491 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
.+..|+++-..|...+++....+.+|+........++. .+..-++.+..+...|+.+|+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~-------~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIK-------ELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 45566677777777777766666666655555554444 444445555555555555554
No 394
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=65.75 E-value=1.8e+02 Score=32.01 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 004063 438 ALQRSLEASRAL 449 (776)
Q Consensus 438 aLqR~L~~s~~l 449 (776)
.++-.|+++++-
T Consensus 96 ~~~~~l~~A~a~ 107 (390)
T PRK15136 96 DAEQAFEKAKTA 107 (390)
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 395
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.37 E-value=1.8e+02 Score=30.43 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYN 465 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yN 465 (776)
|..++..-+.-+|.+|.=+..|..+-+
T Consensus 58 l~~~w~~~~~~~E~~a~~H~~l~~~L~ 84 (261)
T cd07674 58 FAPMWEVFRVSSDKLALCHLELMRKLN 84 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554443
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=65.36 E-value=1.9e+02 Score=30.64 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH-
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE- 574 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE- 574 (776)
..+.-.-...+-+|..+...|..++...-..|..+|..- ..++.+....--++-...+.|+.+...++.|+.
T Consensus 52 ~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L-------~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i 124 (291)
T PF10475_consen 52 SREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNL-------KSADENLTKSGLEILRLQRKRQNLKKLLEKLEQI 124 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556678888888888888887777777776543 333333333333444555567777777777773
Q ss_pred -HHHHHHHHHHhhccCCC
Q 004063 575 -EKKMMQSKLRKASGSGK 591 (776)
Q Consensus 575 -EKklLqSKLR~asa~gK 591 (776)
.....+.+++.+-..|.
T Consensus 125 ~~v~~~~~~l~~ll~~~d 142 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGD 142 (291)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 34555666776655544
No 397
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=65.31 E-value=35 Score=38.03 Aligned_cols=35 Identities=20% Similarity=0.541 Sum_probs=27.0
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 552 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 552 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
..++..+...+..+...+.+|+++++.|+..|++.
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566667778888888999999999888876
No 398
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=65.09 E-value=4.5 Score=36.82 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=8.5
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 455 AENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 455 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
.+|..|..+-+.....+.+++...+.|++.
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp HHHHHHHHHHHCCCCT--------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 455555555555555555555555555554
No 399
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=65.01 E-value=1.3e+02 Score=28.57 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063 508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577 (776)
Q Consensus 508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 577 (776)
.....++.||.....++.++..+|...-..-.++..+..+-....+++..+ ..+-+......+||....
T Consensus 38 ~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 38 ELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAAS 106 (150)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Confidence 334444445555555555555554444433344444444444444444433 333333334444443333
No 400
>PF14992 TMCO5: TMCO5 family
Probab=64.98 E-value=98 Score=33.89 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063 426 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 505 (776)
Q Consensus 426 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 505 (776)
+.-...||++--.|+|-++..-..++.|-.|--......-+. ..+..-.+..+..+ |-++++.-+-|+.|-.+.
T Consensus 10 e~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l--~~le~e~~~LE~~ne~l~ 83 (280)
T PF14992_consen 10 EKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDL--QELELETAKLEKENEHLS 83 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHH--HHHHhhhHHHhhhhHhhh
Confidence 334445555556666666666666666665543322222211 11111122222222 444455555555554432
Q ss_pred hhHHHHHHH------HHHHH-------HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063 506 CNAADERAK------ILASE-------VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572 (776)
Q Consensus 506 ~n~A~ERaK------~LAaE-------VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 572 (776)
-+-..-|.| .+.-| +...+.++.++.....+.++++.++.++......--.-...+-..++..|.++
T Consensus 84 ~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rm 163 (280)
T PF14992_consen 84 KSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRM 163 (280)
T ss_pred hhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111111 11111 22345666777777777788877776554443222222223333445555666
Q ss_pred HHHHH--HHHHHHHhhcc
Q 004063 573 QEEKK--MMQSKLRKASG 588 (776)
Q Consensus 573 QEEKk--lLqSKLR~asa 588 (776)
.+||. +|..+++++-.
T Consensus 164 E~ekE~~lLe~el~k~q~ 181 (280)
T PF14992_consen 164 EEEKEMLLLEKELSKYQM 181 (280)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 66553 45666665444
No 401
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.66 E-value=1.8e+02 Score=30.13 Aligned_cols=83 Identities=24% Similarity=0.290 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-HHHHH
Q 004063 445 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAKI-LASEV 520 (776)
Q Consensus 445 ~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~---Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~-LAaEV 520 (776)
+-++++..-+...+.|-+.+.+.......|+.++..|.. .-..|...+..|..|.++++.+-.+..-+++. +-.|-
T Consensus 37 ~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK 116 (206)
T PF14988_consen 37 ERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEK 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666667666555443 33456677888888888877776666555542 34455
Q ss_pred HHHHHHH
Q 004063 521 IGLEEKA 527 (776)
Q Consensus 521 V~LEek~ 527 (776)
..||.++
T Consensus 117 ~~LEke~ 123 (206)
T PF14988_consen 117 ARLEKEA 123 (206)
T ss_pred HHHHHHH
Confidence 5555555
No 402
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.44 E-value=36 Score=39.34 Aligned_cols=166 Identities=14% Similarity=0.204 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-------HHHHh
Q 004063 433 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA-------NVRLE 505 (776)
Q Consensus 433 T~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD-------aAq~E 505 (776)
++-+..+.-.+-+.-+..+...+.+ .++||+|...-..|++|+..+..-+.+-+..--.|+.... ..+..
T Consensus 11 sRa~ekvlqk~g~~~~TkD~~FE~~---~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g~~~ 87 (460)
T KOG3771|consen 11 NRAPEKVLQKLGKVDETKDEQFEQE---ERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPGRDY 87 (460)
T ss_pred ccccHHHHhhcCCcccccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHH
Confidence 3333333333434444555555555 6899999999888888888877766655444444433322 34667
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 506 CNAADERAKILASEVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 506 ~n~A~ERaK~LAaEVV-~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+....++...|-.|.. .|.+.++.--..-++-=.++.+....| .+++.-. +..+..++++|+.|+-=..|+-
T Consensus 88 l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR---~~Kl~Dy----D~~r~~~~kvq~~k~kd~~k~~ 160 (460)
T KOG3771|consen 88 LQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKR---GRKLVDY----DSARHSFEKLQAKKKKDEAKLA 160 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhh---cchhhhh----HHHHHHHHHHHHhcCCChhhhH
Confidence 7888889999999998 777877755444443333333333222 2222211 2223344555544432222222
Q ss_pred hhccCCCccCCCCCcccccccccccccccccccccccCCccccccc
Q 004063 585 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDA 630 (776)
Q Consensus 585 ~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~a 630 (776)
| +.++|..-....|-+|.+|+++-
T Consensus 161 K----------------------AeeEl~~Aq~~fE~lN~~L~eEL 184 (460)
T KOG3771|consen 161 K----------------------AEEELEKAQQVFEELNNELLEEL 184 (460)
T ss_pred H----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 45556555566677888887443
No 403
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.26 E-value=2.5e+02 Score=34.94 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 504 (776)
Q Consensus 425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 504 (776)
||..++|....--.||---+.-.++.|++.+||-.++.-|=+.-..+-+.|.. +.-|..-=..+|+....++...+.
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~---~d~e~~rik~ev~eal~~~k~~q~ 515 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ---FDIETTRIKIEVEEALVNVKSLQF 515 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555666666666778888888888888877766665554432 122222223344555555566666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
.+.+|.--+++|--.+-.=.++|.|||
T Consensus 516 kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 516 KLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred hHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 666666666666544444444444443
No 404
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=64.02 E-value=31 Score=29.74 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 004063 566 QSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~as 587 (776)
+..|++|+.+.+.|..||+.+.
T Consensus 31 q~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 31 QRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999865
No 405
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=63.94 E-value=1.9e+02 Score=30.23 Aligned_cols=115 Identities=21% Similarity=0.334 Sum_probs=58.4
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 452 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
++-.-=+.|-.+|..+..++.-++.-=|-|...++.+...+.....-|.+.+ .+|.+....--.|+..+..+. .
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK---~hAeekL~~ANeei~~v~~~~---~ 160 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK---AHAEEKLEKANEEIAQVRSKH---Q 160 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh---H
Confidence 3333344566777777777777777777777766666655554443333322 334443333333333332221 1
Q ss_pred hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063 532 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572 (776)
Q Consensus 532 S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 572 (776)
..-++++-.|.+..-.+.|+...+.--.+|..+|..+.|-|
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333333444445555666665566666666555544
No 406
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=63.79 E-value=51 Score=35.68 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=12.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 559 EKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 559 ~kER~~l~stIdaLQEEKklLqSKL 583 (776)
..||.+|+.....||+|+..|+.-+
T Consensus 220 ~ae~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 220 VAEKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555555555555544433
No 407
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=63.75 E-value=38 Score=36.14 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
+..+.++|++....-.+|...++.|+.+|+.|...|+.+..
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33677788888888888888999999999999888888743
No 408
>PRK14148 heat shock protein GrpE; Provisional
Probab=63.50 E-value=57 Score=33.72 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 549 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~ 549 (776)
.+.+|+.+++.|+.+++...-.+--+.+|++|++.....-.+.++..+.+-+ +..|-.=++
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~-------------------~~~LLpV~D 101 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKF-------------------AKELLPVID 101 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHh
Confidence 3455555555555555555455566677788877666555555555544322 122233345
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 592 (776)
.+.+.+..+... ..+..+-+..++.+.+|.++-....+
T Consensus 102 nlerAl~~~~~~-----~~~~~l~~Gv~mi~k~l~~vL~k~Gv 139 (195)
T PRK14148 102 SIEQALKHEVKL-----EEAIAMKEGIELTAKMLVDILKKNGV 139 (195)
T ss_pred HHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 555555543221 13455677777777777775554443
No 409
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=63.40 E-value=2.2e+02 Score=30.80 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENS 544 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~-------LAaEVV~LEek~lqLRS~eLKleKElE~l 544 (776)
....+-+++.|.--..++-.++..+..|..|-.+...|..|.+. -+.++.-|++++.+.+..--|+++.-+..
T Consensus 115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~ 194 (258)
T cd07679 115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKS 194 (258)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888899999999999998888888888652 34688899999999999999988888888
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063 545 QSEISSYKKKISSLEKERQDFQSTIEALQE 574 (776)
Q Consensus 545 ~~Er~S~~~q~ssi~kER~~l~stIdaLQE 574 (776)
..+++.|+..|. .++.++.|.+|+
T Consensus 195 l~~L~~~~~~y~------e~m~~~fe~~Q~ 218 (258)
T cd07679 195 LKELDQTTPQYM------ENMEQVFEQCQQ 218 (258)
T ss_pred HHHHHHhhHHHH------HHHHHHHHHHHH
Confidence 888888888887 357889999994
No 410
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=63.37 E-value=2e+02 Score=30.12 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=36.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 464 YNQQRSVVNQLKSEMEKLQEEIKVQLVELES--------FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--------l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
|-.+-+++..|-..-..-++-...|+++.+. |-.|.-.-.......++=.--|..|...|...+-..++..=
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~ 158 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQK 158 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444444445444442 22222222222233344444455555555555555555555
Q ss_pred hhHHHhhh
Q 004063 536 KLERQLEN 543 (776)
Q Consensus 536 KleKElE~ 543 (776)
|++||..+
T Consensus 159 ~~EkE~~K 166 (192)
T PF09727_consen 159 KLEKEHKK 166 (192)
T ss_pred HHHHHHHH
Confidence 55555433
No 411
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=63.36 E-value=1.7e+02 Score=29.41 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHhhhHHHHHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY----ANVRLECNAADERAKILASEVIGL 523 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr----DaAq~E~n~A~ERaK~LAaEVV~L 523 (776)
++-+.++.+|. +....+..|+.+.++|+.+..........+..++ |..+.++.+...+...|..|+-.|
T Consensus 36 E~Le~~~~~n~-------~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 36 ELLESLASRNQ-------EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666554 4455677788888888765443332222222222 344445555555555555555555
Q ss_pred HHHHH
Q 004063 524 EEKAL 528 (776)
Q Consensus 524 Eek~l 528 (776)
+.++.
T Consensus 109 ~~~~~ 113 (158)
T PF09744_consen 109 ELKLK 113 (158)
T ss_pred HHHhh
Confidence 54443
No 412
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=63.33 E-value=2e+02 Score=35.17 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=17.3
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKS 476 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~ 476 (776)
|+|+=..+-||++.-+|+..|..|.-
T Consensus 121 esL~LQvsvLteqVeaQgEKIrDLE~ 146 (861)
T KOG1899|consen 121 ESLQLQVSVLTEQVEAQGEKIRDLET 146 (861)
T ss_pred hhheehHHHHHHHHHHhhhhHHHHHH
Confidence 45555566777888888877765543
No 413
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.13 E-value=2.6e+02 Score=31.39 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 504 (776)
Q Consensus 425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~ 504 (776)
--.||+-|-+=+-++.-.+.-.+.--+.|..+-+.-.++-.-.---+| ..++.|-++.+. ...++..++.
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~-------~~~~ls~~~~ 287 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRS-------AQDELSEVQE 287 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHH-------HHHHHHHHHH
Confidence 346777766655555555544444444444444443333333322222 233333333333 3333344444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
.++.|.+....+..|.-.+-+++.
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 414
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=62.96 E-value=1.2e+02 Score=27.66 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhh
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESF----RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 542 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l----~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE 542 (776)
+.+-...++.-+.+++........| .+.+..|...+......-.....|+..|..++..+++..-|++..++
T Consensus 30 ~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 30 LKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444 33334444444444444444555555555555544444444444433
No 415
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=62.83 E-value=72 Score=38.26 Aligned_cols=42 Identities=29% Similarity=0.338 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 543 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 543 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+-+-|+++++++---||.+|..-+.-|.+-.||++--|.-||
T Consensus 667 RErmErERLEreRM~ve~eRr~eqeRihreReelRrqqetlr 708 (940)
T KOG4661|consen 667 RERMERERLERERMKVEEERRDEQERIHREREELRRQQETLR 708 (940)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHhhccceee
Confidence 335566677777777899999999999999999888877766
No 416
>PRK14154 heat shock protein GrpE; Provisional
Probab=62.82 E-value=1.6e+02 Score=30.92 Aligned_cols=100 Identities=9% Similarity=0.118 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 550 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S 550 (776)
+..|+.+++.|+++++...-.+--+.+|++|++.....-.+.++..+.+-+. ..|-.=++.
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~-------------------~~LLpVlDn 114 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLI-------------------TDLLPVADS 114 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhhHHhH
Confidence 4555666666666666555566667788888877666666666655544321 122223344
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 004063 551 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 593 (776)
Q Consensus 551 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~ 593 (776)
+.+.+.....+- ..++.+-+-.++...+|.++.....+.
T Consensus 115 LeRAL~~~~~~~----~~~~~l~eGvemi~k~l~~vL~k~GVe 153 (208)
T PRK14154 115 LIHGLESPASED----PQVKSMRDGMSLTLDLLHNTLAKHGVQ 153 (208)
T ss_pred HHHHHhcccccc----hhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 555544332111 234566677777777777765554443
No 417
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=62.80 E-value=1e+02 Score=31.70 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q 004063 497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 540 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKE 540 (776)
.+..........-.-++-.+..+.+.||.+|.++|-...+.+..
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444555666777788888888888888887777665443
No 418
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=62.76 E-value=8.7 Score=35.02 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 561 ERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 561 ER~~l~stIdaLQEEKklLqSKLR 584 (776)
+-..+...++.|+.+......++|
T Consensus 108 ~~~~l~~~~~~lk~~~~~~~~~~~ 131 (131)
T PF05103_consen 108 EAERLREEIEELKRQAEQFRAQFK 131 (131)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334455566666666665555543
No 419
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=62.72 E-value=72 Score=34.64 Aligned_cols=63 Identities=32% Similarity=0.466 Sum_probs=46.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
..|....+-+++.|.|||+|---|+-.-+.-|++++.|-.+|-.|. ..++.|..++-.|.+.-
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~-------~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD-------SELELLRQELAELKQQQ 148 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHhhHHHH
Confidence 3456778889999999999999998888888888888877776554 44555555555555543
No 420
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=62.72 E-value=2.2e+02 Score=30.56 Aligned_cols=145 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-------QRSVVNQLKSEMEKLQEEIKVQLV 490 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq-------Q~~~v~qLk~~mE~Lq~Ei~aQ~~ 490 (776)
...++..|++-+++|.+-+-.-..-|+....+-+.=+.|.+.+-.+|-. -......|+.++.+++.-+..-..
T Consensus 68 ~~gg~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~ 147 (342)
T cd08915 68 EEGGLDNIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASN 147 (342)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063 491 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570 (776)
Q Consensus 491 ~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 570 (776)
.-..+..-|+. ...-.+.|..=...|+.-+- +.-...-.++......++.+-.++..+.++|..++..+.
T Consensus 148 sD~~l~~~~~~-------~~~~l~lL~~~~~~l~~~~P---s~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk 217 (342)
T cd08915 148 SDNEVLQCYES-------IDPNLVLLCGGYKELKAFIP---SPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELE 217 (342)
T ss_pred hhHHHHHHHHH-------HHHHHHHhcCChHHHHHhCC---CccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 004063 571 AL 572 (776)
Q Consensus 571 aL 572 (776)
..
T Consensus 218 ~~ 219 (342)
T cd08915 218 IK 219 (342)
T ss_pred HH
No 421
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.63 E-value=2.2e+02 Score=30.48 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH--
Q 004063 450 SESLAAENSSLTDSYNQQRS------------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-- 515 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~~------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~-- 515 (776)
++.+|.+...+.+.|+.|-. +...-.+...++++|+.....+|+..+--|+.+-.++..|.+.++.
T Consensus 79 t~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~ 158 (264)
T cd07654 79 LDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQ 158 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063 516 ----------------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572 (776)
Q Consensus 516 ----------------LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 572 (776)
+......+.+|-.+......++..|---.-........+|= -..|-.+|+.|
T Consensus 159 ~~~~k~~~~~~~sk~~~eK~~~K~~~k~~~~~~k~~~akNeYll~L~~aN~~q~kYY-----~~dLP~lld~l 226 (264)
T cd07654 159 AREARSDLSIFQSRTSLQKASVKLSARKAECSSKATAARNDYLLNLAATNAHQDRYY-----QTDLPAIIKAL 226 (264)
T ss_pred HhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHH
No 422
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=62.63 E-value=1.5e+02 Score=28.59 Aligned_cols=66 Identities=14% Similarity=0.275 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 518 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 518 aEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
.|-..|+..+..|+.+..-..+.+..|..+++.+.+.+..----+.+|+..+-+.|--|..++-||
T Consensus 37 kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 37 KQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333334433333333333333333344444444444444311112244444444444444444444
No 423
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=62.40 E-value=75 Score=28.27 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 482 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 482 (776)
+.||++.=++-++-=-+.+.+.+.=+.+-+.-..+|.+|..++|...-.|..|-+.+++|-
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677777777777777888888888888899999999999999999999999999999874
No 424
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.36 E-value=73 Score=28.01 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 004063 566 QSTIEALQEEKKMMQSKLRKASGS 589 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~asa~ 589 (776)
+..|++|+.+.++|..||+.+..+
T Consensus 35 q~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 35 EMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 467899999999999999976543
No 425
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.10 E-value=3.2e+02 Score=32.21 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=82.4
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 004063 419 NEDFAALEQ---HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES- 494 (776)
Q Consensus 419 ~~~faaLqq---hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~- 494 (776)
.-.|++||+ |.++.+.|.--+++..++ +.+-|++= ++ ..-..-+++..+...|+.|-++++-.+..|.+
T Consensus 254 ~v~~~ales~~sq~~e~~selE~llklker---l~e~l~dg-ea---yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~k 326 (521)
T KOG1937|consen 254 LVEYKALESKRSQFEEQNSELEKLLKLKER---LIEALDDG-EA---YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQK 326 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHH---HHHhcCCh-Hh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456777774 556666555444444333 23333221 22 22233456777777888888877777666543
Q ss_pred ---hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH--HHHHHHHHHhH----HHhhhhH
Q 004063 495 ---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE--ISSYKKKISSL----EKERQDF 565 (776)
Q Consensus 495 ---l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E--r~S~~~q~ssi----~kER~~l 565 (776)
++.+.++--.+..+ --+.+.|.+++..+-+++.+--.---|+.++++.+-.. |..|.+.+.-| -|-++++
T Consensus 327 kl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 327 KLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred HHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46666664444444 45667777777777777663322333455555554332 33344443332 2333333
Q ss_pred HHHH---HHHHHHHHHHHHHHH
Q 004063 566 QSTI---EALQEEKKMMQSKLR 584 (776)
Q Consensus 566 ~stI---daLQEEKklLqSKLR 584 (776)
.+.+ ..||-|+...+.+|-
T Consensus 406 ~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 406 VKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 344455555555554
No 426
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.58 E-value=55 Score=32.38 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 004063 472 NQLKSEMEKLQEEIKV 487 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~a 487 (776)
..++.++++|+.|++.
T Consensus 157 ~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444444444444444
No 427
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=61.56 E-value=2.2e+02 Score=33.95 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHH-----HHHhhhHHHHHHHHHH-------HHHHHHHHHHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFR------NEYAN-----VRLECNAADERAKILA-------SEVIGLEEKALRL 530 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~------aErDa-----Aq~E~n~A~ERaK~LA-------aEVV~LEek~lqL 530 (776)
-...+|+..+.-++.|+-+-+.+.--++ .|+.+ -..++..+..++..++ .|...++|+...|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666555555555444333333222 22222 1223344444444443 4555666677777
Q ss_pred HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhh-hHHHHHHHHH
Q 004063 531 RSNELKLERQLENSQSEISSYKKKISSLEKERQ-DFQSTIEALQ 573 (776)
Q Consensus 531 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~-~l~stIdaLQ 573 (776)
.+.-+-+.|.+.-+++|.+-...-+. ++++|+ ++.-+++.||
T Consensus 239 lsql~d~qkk~k~~~~Ekeel~~~Lq-~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEELDEHLQ-AYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 77777777777777777665554444 456654 4555666666
No 428
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=61.54 E-value=67 Score=32.61 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKIL 516 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~L 516 (776)
..|+++++.++..+..+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~ 121 (322)
T TIGR01730 101 QADLDDAKAAVEAAQADLEAA 121 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444443333
No 429
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.26 E-value=54 Score=32.46 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 004063 543 NSQSEISSYKKKISSLEKERQDFQSTIEALQEE 575 (776)
Q Consensus 543 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE 575 (776)
++..|+..+++++...++|..-|.+-.+.|++|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555555555544
No 430
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.24 E-value=30 Score=32.96 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=47.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 473 QLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 473 qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
..+.|+|. ++..++.|+..|.-+ ++|||..++=+-.++++...|.+-|..||.++.
T Consensus 33 ~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 33 EVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 566778888888887 899999999999999999999999999999886
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=61.22 E-value=2.3e+02 Score=33.08 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=6.6
Q ss_pred CCccccCCCCcc
Q 004063 207 SNAIALGNGHSF 218 (776)
Q Consensus 207 sn~~~~~~g~s~ 218 (776)
-|.|+-.||.|-
T Consensus 24 lnvitGetGaGK 35 (553)
T PRK10869 24 MTVITGETGAGK 35 (553)
T ss_pred cEEEECCCCCCh
Confidence 355655566553
No 432
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=60.91 E-value=2.6e+02 Score=30.66 Aligned_cols=240 Identities=14% Similarity=0.179 Sum_probs=129.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-h------hHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-Q------RSVVNQLKSEMEKLQEEIKVQLVE 491 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq-Q------~~~v~qLk~~mE~Lq~Ei~aQ~~~ 491 (776)
.+.+..|++-++||.+-+-.-..-|...+++-+.=+.|.+.+-.+|-. + ...-..|..++.+++.-+..-...
T Consensus 70 ~~g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~s 149 (353)
T cd09236 70 EDGLERIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGAS 149 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999999999999999999999998873 2 334556777776666654433333
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
-+.++.-|+. ...-.+.|..-...|+.-+=..+...+ -.++......++.+-. .|+.
T Consensus 150 D~~v~~k~~~-------~~~~l~lL~~~~~~l~~~~Ps~~~~~~--~~~~~~~i~~Lr~~l~--------------~l~~ 206 (353)
T cd09236 150 DELVRRKLDE-------WEDLIQILTGDERDLENFVPSSRRPSI--PPELERHVRALRVSLE--------------ELDR 206 (353)
T ss_pred HHHHHHHHHH-------HHHHHHHHcCCHHHHHHhCCCCCCCCC--CchhhHHHHHHHHHHH--------------HHHH
Confidence 3333333322 122223333323333333322111010 0111222222233333 4455
Q ss_pred HHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCccccccc
Q 004063 572 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL 651 (776)
Q Consensus 572 LQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af 651 (776)
|..|++.+...||.... ++|+ .+.++......+.....-. .+.-.|
T Consensus 207 l~~eR~~~~~~Lk~k~~--------------------~DDI----------~~~ll~~~~~~~~~~~~~~----i~~~~f 252 (353)
T cd09236 207 LESRRRRKVERARTKAR--------------------ADDI----------RPEILREAARLEREYPATE----VAPAHF 252 (353)
T ss_pred HHHHHHHHHHHHHHHHH--------------------hcCc----------hHHHHHHHHhhhccccccc----ccHHHH
Confidence 55555555555553211 1222 1111111000000000000 000001
Q ss_pred ccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063 652 EGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720 (776)
Q Consensus 652 ~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 720 (776)
-.|=+.+|+..+.....|.+....++.++..|..+-......++.+. ..++-+..-|+|+.+-.
T Consensus 253 ----e~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~-~~~~re~~lq~L~~ay~ 316 (353)
T cd09236 253 ----EDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKGDP-ATKERERALQSLDLAYF 316 (353)
T ss_pred ----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCh-hHHHHHHHHHHHHHHHH
Confidence 23556678888888888888888899999999988887766555433 34455666666665543
No 433
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=60.88 E-value=2e+02 Score=29.30 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV------ 490 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~--ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~------ 490 (776)
...+..|.+.++-|+..+-.|--++..=-.-...|+. ++..|..-++.-+.....+..-..+.=.+-...+.
T Consensus 17 e~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey 96 (216)
T cd07627 17 ESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEY 96 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 491 -----ELESFRNEYANVRLECNAADERAKILASEVIGL-------EEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 491 -----~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L-------Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
++..+-..|..+.+.+..|..-..++.+....| .+|+.++ ++++..+......+.+++..|
T Consensus 97 ~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~-------~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 97 IRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSL-------LSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q 004063 559 EKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 559 ~kER~~l~stIdaLQEEKkl 578 (776)
-..+..+|.+...+|..
T Consensus 170 ---s~~~k~El~rF~~~r~~ 186 (216)
T cd07627 170 ---SELIKSELERFERERVE 186 (216)
T ss_pred ---HHHHHHHHHHHHHHHHH
No 434
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=59.93 E-value=2e+02 Score=32.78 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHhhc
Q 004063 749 DEVVERVLGWIMKLF 763 (776)
Q Consensus 749 devvervlgwimklf 763 (776)
|+..+|+..++.+.|
T Consensus 387 ~~q~~~L~~~L~k~~ 401 (445)
T PRK13428 387 DAQRTRLTEVLSRIY 401 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666665554
No 435
>PRK14140 heat shock protein GrpE; Provisional
Probab=59.91 E-value=53 Score=33.81 Aligned_cols=50 Identities=8% Similarity=0.230 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 519 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaE 519 (776)
.+++|+.+++.|+.+++...-.+--+.+|++|++.....-.++++..+.+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~ 87 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQ 87 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555555666778888777766666666655544
No 436
>PRK09793 methyl-accepting protein IV; Provisional
Probab=59.85 E-value=3e+02 Score=31.17 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQR----SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 486 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR----~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 486 (776)
..|||..|-..+..|...=-.+.. .-..-...+++++.-+..+..+.++|...+.+....|+++-..+.
T Consensus 241 ~~dE~g~l~~sln~m~~~L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~ 313 (533)
T PRK09793 241 GRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVG 313 (533)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777666666655543222222 222233456778888888899999999999999888888876543
No 437
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.64 E-value=2.2e+02 Score=33.21 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=58.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----------HHHHHHHhhhHHHHHHH--------HHHHHH
Q 004063 460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN-----------EYANVRLECNAADERAK--------ILASEV 520 (776)
Q Consensus 460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a-----------ErDaAq~E~n~A~ERaK--------~LAaEV 520 (776)
+-+..-+|+.+..+-++++-+|+-++..-+++.+++++ +.++.+..|.+-....+ .+..++
T Consensus 22 ~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~ 101 (542)
T KOG0993|consen 22 KEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQM 101 (542)
T ss_pred hhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHH
Confidence 34556677888888899999999998888888888753 33333333332222222 234455
Q ss_pred HH-HHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063 521 IG-LEEKALRLRSNELKLERQLENSQSEISS 550 (776)
Q Consensus 521 V~-LEek~lqLRS~eLKleKElE~l~~Er~S 550 (776)
-. ||-+.+++--++=|+++|+..++.-.++
T Consensus 102 ~~~leqertq~qq~~e~~erEv~~l~~llsr 132 (542)
T KOG0993|consen 102 CQNLEQERTQLQQNEEKLEREVKALMELLSR 132 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 7777777777777777777776655444
No 438
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=59.28 E-value=1.2e+02 Score=27.36 Aligned_cols=62 Identities=19% Similarity=0.399 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 492 LESFRNEYANVRLECNAADERAKILAS-------EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A~ERaK~LAa-------EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
|++++.||++.-++++....+...+.. |+..+..++.+|=..+.|+.. .+-+||.++++++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ---QYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 456666666666666655555544433 344444444444333333322 24444455544443
No 439
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=59.16 E-value=3.6e+02 Score=31.74 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=5.7
Q ss_pred CCCCCCCCCcccc
Q 004063 636 DASGSTLLPESGR 648 (776)
Q Consensus 636 ~vs~~p~~P~~g~ 648 (776)
.++...+.+..|+
T Consensus 395 ~Ir~r~~~~~~~~ 407 (489)
T PF05262_consen 395 GIRGRTFYEREDD 407 (489)
T ss_pred eeccceeEEcCCC
Confidence 4444444444433
No 440
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=59.06 E-value=2.9e+02 Score=30.75 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 561 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE 561 (776)
..+++-..+.+++...-..+.-.+|.+-..|++||.+-|-.-=+.+|-++.|+.=|=.+-.+|+--++|
T Consensus 108 kvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~Eee 176 (338)
T KOG3647|consen 108 KVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEE 176 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 345777788888888888888899999999999999988888888999999887666666666644433
No 441
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.82 E-value=4.7e+02 Score=33.00 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=13.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 463 SYNQQRSVVNQLKSEMEKLQEEIKVQL 489 (776)
Q Consensus 463 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 489 (776)
++-+-.-.|.+||+.+.-+|+-+.+|.
T Consensus 384 r~e~~E~EvD~lksQLADYQQALD~QQ 410 (1480)
T COG3096 384 RAEAAELEVDELKSQLADYQQALDVQQ 410 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444455555555555555555543
No 442
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=58.81 E-value=3.3e+02 Score=31.29 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHhHHHHHH-HHHHHhHHHHHHH
Q 004063 686 ALSSELAQSSKLKDLNNELSRK-LEHQTQRLELLTA 720 (776)
Q Consensus 686 aLa~esr~~~dLk~lN~ELsRK-LE~qtQRLELlts 720 (776)
.|..+.+.+..|+..=..+.+. |.+...|||...+
T Consensus 538 dL~~A~~~~~~L~g~~~~~a~dW~~~ar~~le~~q~ 573 (582)
T PF09731_consen 538 DLDKAARELNQLKGWARKLAADWLKEARRRLEVEQA 573 (582)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566665544444332 4555555555443
No 443
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=58.80 E-value=2.3e+02 Score=29.47 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHH
Q 004063 689 SELAQSSKLKDLNNELSRKLEHQ 711 (776)
Q Consensus 689 ~esr~~~dLk~lN~ELsRKLE~q 711 (776)
+-.+++.+|+++++++..-|..-
T Consensus 224 ~~~~k~~~l~~~~~~~~~~L~~a 246 (264)
T PF06008_consen 224 DLEKKKQELSEQQNEVSETLKEA 246 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444443
No 444
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=58.71 E-value=2.9e+02 Score=31.92 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=68.1
Q ss_pred cCCcccccccCCCCCCCcCCCCccccCCCccccccCCCcccc-----ccccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 004063 366 TGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSI-----ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 440 (776)
Q Consensus 366 ~~~~s~~~~sn~~s~~d~s~~p~v~~~n~v~~~~~~~dE~~~-----e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq 440 (776)
.+.|..--.+.+|+-|.-. +|-+-++.-| ..+-+|. +-.-|...-..|.---.
T Consensus 44 DGsFlVRdAstm~GdYTLt-------------l~k~g~~KLikI~h~DgKyGF~---d~ltf~SVVelIn~yr~------ 101 (464)
T KOG4637|consen 44 DGSFLVRDASTMQGDYTLT-------------LRKGGNNKLIKIVHRDGKYGFS---DPLTFNSVVELINHYRN------ 101 (464)
T ss_pred CCcEEeeccccCCCceEEE-------------EecCCccceeeeEEecCccCCC---CchhhHHHHHHHHHHhh------
Confidence 4556655555688887654 2223333333 3466675 44556655555554333
Q ss_pred HHHHHHHHHHHHHHHhhhHHH--------HHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Q 004063 441 RSLEASRALSESLAAENSSLT--------DSYNQQRS----VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 508 (776)
Q Consensus 441 R~L~~s~~l~EsLa~ENsaLt--------~~yNqQ~~----~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~ 508 (776)
++|+.=|.+|- +.=|.|-. .++.+..++.+.-+.+++--.+++.+..||+++.+|...
T Consensus 102 ----------~SL~~yN~~LDvrLlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~ 171 (464)
T KOG4637|consen 102 ----------ESLAQYNPKLDVRLLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQM 171 (464)
T ss_pred ----------hHHHhhCcccceeeechHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555541 22222211 233333333333333444567889999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004063 509 ADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 509 A~ERaK~LAaEVV~LEek~l 528 (776)
+ +++.|+..=..|+.
T Consensus 172 k-----~t~~~afn~tikif 186 (464)
T KOG4637|consen 172 K-----RTAIEAFNETIKIF 186 (464)
T ss_pred H-----HHHHHHhhhHHHHH
Confidence 4 45666655555544
No 445
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=58.50 E-value=2.5e+02 Score=29.82 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=59.0
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 450 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA-NVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD-aAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
++.+|.....+.+.+|. +.+..|..-+...++..+.+..--..+..|+. .+..++.+|.-.=..+..++....++..
T Consensus 74 te~iA~~~~~~aE~l~~--~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~ 151 (234)
T cd07686 74 TEQLSKIMKTHAEELNS--GPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYK 151 (234)
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566666666666663 23333333333333333333333344555554 3455555555555556666665555554
Q ss_pred HHHh---HhhhhHHHhhhhHHHHHHHHHHHHhHHHhh---------hhHHHHHHHHH
Q 004063 529 RLRS---NELKLERQLENSQSEISSYKKKISSLEKER---------QDFQSTIEALQ 573 (776)
Q Consensus 529 qLRS---~eLKleKElE~l~~Er~S~~~q~ssi~kER---------~~l~stIdaLQ 573 (776)
..-. ..=|+++-.+....+..-+..+|-..-..- ..|-.++|-||
T Consensus 152 ~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ 208 (234)
T cd07686 152 DAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQ 208 (234)
T ss_pred HhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4310 123444555555555555555554332222 23555666666
No 446
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.38 E-value=3.2e+02 Score=31.88 Aligned_cols=93 Identities=24% Similarity=0.321 Sum_probs=46.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHhHhhh-hHHH
Q 004063 464 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE--KALRLRSNELK-LERQ 540 (776)
Q Consensus 464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEe--k~lqLRS~eLK-leKE 540 (776)
+|-++.-..+.+.++.+++.+++.+-.+...+..|-=+ +.+ -.++-|...|+. ++..-+-.++. ++++
T Consensus 52 ~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~-~~~--------~~~q~e~~~~~~~~~~N~e~dke~~~le~~ 122 (438)
T COG4487 52 NEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIK-QFE--------LALQDEIAKLEALELLNLEKDKELELLEKE 122 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHhhHHhhHHHHHHHHH
Confidence 34366667777778888888777665554443332111 111 222223333332 11111111111 3455
Q ss_pred hhhhHHHHHH-HHHHHHhHHHhhhhH
Q 004063 541 LENSQSEISS-YKKKISSLEKERQDF 565 (776)
Q Consensus 541 lE~l~~Er~S-~~~q~ssi~kER~~l 565 (776)
|..+..|... ...++..+.++|+..
T Consensus 123 L~~~~~e~~~~lq~~~e~~~kkre~~ 148 (438)
T COG4487 123 LDELSKELQKQLQNTAEIIEKKRENN 148 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555544443 677778888888764
No 447
>PRK14155 heat shock protein GrpE; Provisional
Probab=58.23 E-value=1.3e+02 Score=31.33 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 551 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~ 551 (776)
..|+.+++.|+.+++...-.+--+.+|++|++.....-.++++..+.+-+ ++.|-.=++.+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~-------------------~~~LLpV~DnL 76 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKF-------------------ARDLLGAADNL 76 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHhhH
Confidence 45566666666666555555556677777777666665555555554322 22233334555
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 004063 552 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 552 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 592 (776)
++.+..+.++.. ...++.+-+-.++.+.+|.++-....+
T Consensus 77 erAl~~~~~~~~--~~~~~~i~~Gvemi~k~~~~~L~k~GV 115 (208)
T PRK14155 77 GRATAASPKDSA--DPAVKNFIIGVEMTEKELLGAFERNGL 115 (208)
T ss_pred HHHHhccccccc--chHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 555554433211 123456666666666666664443333
No 448
>PRK14141 heat shock protein GrpE; Provisional
Probab=57.88 E-value=1.4e+02 Score=31.36 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 004063 473 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 552 (776)
Q Consensus 473 qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~ 552 (776)
.|..+++.|+++++...-.+.-+.+|++|++.....-.++++..+.+-+ +..|-.=++.+.
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~-------------------~~dLLpViDnLe 95 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGF-------------------ARDMLSVSDNLR 95 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhhHhHHH
Confidence 3455566666666555555566777888877665555555555444322 122333345556
Q ss_pred HHHHhHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 004063 553 KKISSLEKER-QDFQSTIEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 553 ~q~ssi~kER-~~l~stIdaLQEEKklLqSKLR~asa~gKa 592 (776)
+.+..+..+. .+.-..+..+.+..+|.+.+|.++-....+
T Consensus 96 rAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek~GV 136 (209)
T PRK14141 96 RALDAIPAEARAAADAGLKALIEGVEMTERAMLNALERHGV 136 (209)
T ss_pred HHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6665543321 111234667777788777777775554444
No 449
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.67 E-value=2.3e+02 Score=33.56 Aligned_cols=68 Identities=21% Similarity=0.127 Sum_probs=35.4
Q ss_pred CcccCCCCcccCCCCCCCccCCCCCCCCCCCCCccccCCCccccCCCCCCCcccccCCCcccccCCccccccccCCCCCC
Q 004063 245 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRAS 324 (776)
Q Consensus 245 ~s~~f~~~~~~~~~e~~~s~S~~~l~s~~~~~~~~S~s~~~~~d~~~Ssnh~P~~S~~~et~~~rSRpSFLDSlnV~Ra~ 324 (776)
++|.|---|++|.. -|+++.||=|+--. +| -.| +|+..-..+++--..|+-+|--||+.
T Consensus 225 ~~~k~a~f~~nnld--~~~~~~~y~~~~~~---------~~---------~~~-~~~~~~~~~~~~a~~~~~~~~~p~~~ 283 (518)
T PF10212_consen 225 GTGKIAAFFSNNLD--FFTSSSGYGPKGAT---------TF---------TNP-LSAECMLQYKKRAAAYMSSLKKPCPE 283 (518)
T ss_pred hhHHHHHHHhcchH--HhhcccccCCCccc---------cc---------CCc-cchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44444444444433 27777777776511 11 122 23333334555556788888555555
Q ss_pred CCCccccCCccc
Q 004063 325 SGTLFEQTEPER 336 (776)
Q Consensus 325 ~~t~~~~tEp~k 336 (776)
+ +||.|-=.
T Consensus 284 s---vpy~~a~~ 292 (518)
T PF10212_consen 284 S---VPYEEALA 292 (518)
T ss_pred c---CChHHHHh
Confidence 4 77766544
No 450
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.61 E-value=5.3e+02 Score=33.28 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=25.9
Q ss_pred hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 536 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 536 KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
|.+.++...+.....+.+++.-+.+++..+.+.|++++.|+.-|..
T Consensus 853 ~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 853 KKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3344444444455555555555666666666666666666654433
No 451
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.28 E-value=3.4e+02 Score=30.99 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
-.+.+|+..-++|.+++---+.+....+++.+...--.-+++|+++.|+..+..|.-+|.
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 345566666666655554444455566777776666667788888888888887777773
No 452
>PRK04406 hypothetical protein; Provisional
Probab=56.99 E-value=1.1e+02 Score=27.21 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 004063 566 QSTIEALQEEKKMMQSKLRKASGS 589 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~asa~ 589 (776)
+..|++|+.+.++|..||+.+.++
T Consensus 38 q~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 38 QLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 467899999999999999976543
No 453
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.67 E-value=99 Score=27.84 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004063 510 DERAKILASEVIGLEE 525 (776)
Q Consensus 510 ~ERaK~LAaEVV~LEe 525 (776)
.++++.+..++..||+
T Consensus 73 ~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 73 KAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 454
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.58 E-value=4e+02 Score=31.51 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 478 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 478 mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
+++|+..++.-......++.-|+..++-+-.--...+
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr 331 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLR 331 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555555555556667777777766554444443
No 455
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.25 E-value=2.1e+02 Score=33.60 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYN 465 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yN 465 (776)
||.-|+++|+=.+.+|.|---|-++--
T Consensus 264 lQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 264 LQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 344556666655566655555555443
No 456
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=56.10 E-value=4.5e+02 Score=31.97 Aligned_cols=48 Identities=21% Similarity=0.061 Sum_probs=39.2
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 004063 656 VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNE 703 (776)
Q Consensus 656 ~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~E 703 (776)
-.|-+=|.|.+.++-.+|.+|..-|+.|+.--.--..++..||++.-|
T Consensus 220 ~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELie 267 (683)
T PF08580_consen 220 MRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIE 267 (683)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555667788999999999999999999988888888888776554
No 457
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=55.97 E-value=2.1e+02 Score=32.04 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=28.9
Q ss_pred hHHHhhhhHHHHHHHHHHHHhH----HHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 537 LERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 537 leKElE~l~~Er~S~~~q~ssi----~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
...+++..+......+..+... ...+.-+..+...+|..++.++..++++-.
T Consensus 149 s~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l 204 (352)
T COG1566 149 SREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKL 204 (352)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Confidence 3455555555555555554332 233444555666666777777777776544
No 458
>PRK10780 periplasmic chaperone; Provisional
Probab=55.96 E-value=2.1e+02 Score=28.02 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=27.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 458 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 458 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
..+...|.+-......|+.+...++.+++....++.....++.
T Consensus 32 q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q 74 (165)
T PRK10780 32 GSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQ 74 (165)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777776666666555555543
No 459
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=55.38 E-value=2.9e+02 Score=29.55 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 004063 447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE-CNAADERAKILASEVIGLEE 525 (776)
Q Consensus 447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E-~n~A~ERaK~LAaEVV~LEe 525 (776)
+..+..+-.|-...+.+|....+...+-|+.+-.+++.+-...- ..+|.+-+| +|+|+.+.-....|....|.
T Consensus 69 ~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~------~~~D~~wqEmLn~A~~kVneAE~ek~~ae~ 142 (239)
T PF05276_consen 69 RRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSN------WTFDPAWQEMLNHATQKVNEAEQEKTRAER 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777888888888888888888877776444221 122332222 45555555444444444444
Q ss_pred HHH
Q 004063 526 KAL 528 (776)
Q Consensus 526 k~l 528 (776)
.-.
T Consensus 143 eH~ 145 (239)
T PF05276_consen 143 EHQ 145 (239)
T ss_pred HHH
Confidence 433
No 460
>PRK14143 heat shock protein GrpE; Provisional
Probab=55.27 E-value=63 Score=34.27 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 519 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaE 519 (776)
+.+|+.+++.|+++++...-.+--+.+|++|++.....-.++++..+.+
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~ 117 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKC 117 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555444445566788888877766666666655544
No 461
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=55.25 E-value=1.2e+02 Score=28.27 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
..+..+...++.++-....+++.|+.|+-.|.++...-+. ..+...+++++..+....+++..
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~ 75 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWR 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555556667777788888777777665444 23334444444444444444433
No 462
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=55.08 E-value=49 Score=29.98 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~----E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
.-.+|+.++.+||..++-+.....++..=.....- -.......++.|=.||..||.+|..|
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~L 73 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKL 73 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44678888988888888777666665332222111 11244568899999999999999866
No 463
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=55.05 E-value=1.5e+02 Score=26.20 Aligned_cols=97 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHhhh
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE----EIKVQLVELES 494 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~----Ei~aQ~~~le~ 494 (776)
..++..+...|+.|-.-.-.+.-....-.++.+.|-.........++.-...+..|......... +...+....+.
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~ 93 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEK 93 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHH
Q ss_pred hHHHHHHHHHhhhHHHHHHHH
Q 004063 495 FRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~ 515 (776)
|..++-.+..+++.+..+.+.
T Consensus 94 L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 94 LRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 464
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=55.02 E-value=4e+02 Score=31.11 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=6.8
Q ss_pred HHHHHHHHhHhhhhHHHh
Q 004063 524 EEKALRLRSNELKLERQL 541 (776)
Q Consensus 524 Eek~lqLRS~eLKleKEl 541 (776)
...+++++-.+++...++
T Consensus 82 t~~~~~~en~~~r~~~ei 99 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLNEI 99 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 465
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=54.92 E-value=3.2e+02 Score=29.95 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 482 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 482 q~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
.+.+.....+++...+|.+.+..+..++.+|......-+..|+.+-.++
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555555555555555444433
No 466
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=54.81 E-value=29 Score=29.47 Aligned_cols=47 Identities=26% Similarity=0.231 Sum_probs=40.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004063 666 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQT 712 (776)
Q Consensus 666 IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qt 712 (776)
|+-|..|--.|..||+.=..+=..+..++.+|..+|..|..+|+-++
T Consensus 3 ~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888899999988888888899999999999999999988654
No 467
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=54.70 E-value=2.8e+02 Score=29.17 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=32.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
+.++..+.....+++..++..|+++--.--.---...|...+.+.++.....++.++.
T Consensus 83 ~~~a~~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a~~~~e~e~~~~q~~~~~~rl~ 140 (212)
T COG3599 83 KQAAEAEADDILKRASAQAQRVFGKAQYKADRYLEDAKIAQELEDLKRQAQVERQRLR 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888876433221111122555566665544444444433
No 468
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=54.45 E-value=3.3e+02 Score=29.89 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 474 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 474 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
..++|+-.+.|+.....+|.....|..-++....+..+|.-.|..|...|...+.-++
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444445555555555555555555444433
No 469
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.12 E-value=76 Score=36.95 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=25.9
Q ss_pred HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 552 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 552 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
++++..+++.+.+++..|+.|++|.+.|+.++.
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777888889999999999988883
No 470
>PRK00295 hypothetical protein; Provisional
Probab=53.96 E-value=1.2e+02 Score=26.43 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 004063 566 QSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~asa 588 (776)
+..|++|+.+.++|..||+.+..
T Consensus 32 q~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 32 QRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999997653
No 471
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=53.87 E-value=2.5e+02 Score=28.36 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHH
Q 004063 447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV-RLECNAADERAKILASEVIGLEE 525 (776)
Q Consensus 447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA-q~E~n~A~ERaK~LAaEVV~LEe 525 (776)
-.++|+--.|.+.|.....+-...|.+.-.++++|+..-..-+..|.-+...|+.+ ..+.-+|=|.|+.++.+...+.+
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re 98 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666677777777777777777777777777777666666676666666553 34567888999999999999999
Q ss_pred HHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 526 KALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 526 k~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
+-.+||-..=.+++.+.++..=+.+++.=++
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE~l~s 129 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAENLVS 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888777778888777766555554443
No 472
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=53.35 E-value=1.1e+02 Score=37.93 Aligned_cols=80 Identities=28% Similarity=0.317 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHH-HHHHHH-HHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS-TIEALQ-EEKKMMQSKLR 584 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~s-tIdaLQ-EEKklLqSKLR 584 (776)
.++.||-|...-|-...+++-.+.| .+.|...+|+...+++-.-..+||.-..- .+-+-| ++..+++.+|+
T Consensus 227 qe~eE~qkreeEE~~r~eeEEer~~-------ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~~~a~aea~l~ 299 (1064)
T KOG1144|consen 227 QEEEERQKREEEERLRREEEEERRR-------EEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLK 299 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHHHHHHHH
Confidence 3445555665555555555554443 23334444555555555555555555442 333444 78889999999
Q ss_pred hhccCCCcc
Q 004063 585 KASGSGKSI 593 (776)
Q Consensus 585 ~asa~gKa~ 593 (776)
.+.+.|++.
T Consensus 300 ~ll~sg~~~ 308 (1064)
T KOG1144|consen 300 QLLASGGGL 308 (1064)
T ss_pred HHHhcCCCC
Confidence 988888653
No 473
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=53.24 E-value=2.7e+02 Score=28.62 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-HHHHHH-HHHHHHHHHHHHHHHhhhhHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-VNQLKS-EMEKLQEEIKVQLVELESFRNE 498 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~-v~qLk~-~mE~Lq~Ei~aQ~~~le~l~aE 498 (776)
-|+-+..-|+++|-+++-.|-.. -.+++|.|-.++..+++.++.+-.. |++|+. ..+-+.
T Consensus 23 ~~~~~~kqve~~~l~~lkqqqd~--itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~---------------- 84 (165)
T PF09602_consen 23 LFASFMKQVEQQTLKKLKQQQDW--ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLN---------------- 84 (165)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 46777888999999987776655 6678888989998888888876554 555522 111111
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
...++=+++.+.|.+-+..|-=. +.++.-=.+.+--+++.+=+.++..+-. +-|+.+++.+|+-=++.|-
T Consensus 85 -----d~inE~t~k~~El~~~i~el~~~--~~Ks~~~~l~q~~~~~eEtv~~~ieqqk---~~r~e~qk~~~~yv~~~k~ 154 (165)
T PF09602_consen 85 -----DSINEWTDKLNELSAKIQELLLS--PSKSSFSLLSQISKQYEETVKQLIEQQK---LTREEWQKVLDAYVEQAKS 154 (165)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 12234455566555555332211 1111111111111223322233333322 4577888888888888777
Q ss_pred HHHHHH
Q 004063 579 MQSKLR 584 (776)
Q Consensus 579 LqSKLR 584 (776)
.|.-|-
T Consensus 155 ~q~~~~ 160 (165)
T PF09602_consen 155 SQKELA 160 (165)
T ss_pred HHHHHH
Confidence 776554
No 474
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=53.11 E-value=1e+02 Score=33.05 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.5
Q ss_pred hccCCCc
Q 004063 586 ASGSGKS 592 (776)
Q Consensus 586 asa~gKa 592 (776)
++-.|..
T Consensus 188 AP~dG~V 194 (370)
T PRK11578 188 APMAGEV 194 (370)
T ss_pred CCCCcEE
Confidence 4555554
No 475
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.10 E-value=2.7e+02 Score=28.58 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
++..|+--|..|-.-|...-..++..+.+-+.+..+ ......--..+.+|+..|.+||++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 566777778888877777777777666666666655 112223345566666666666654
No 476
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=52.96 E-value=1.8e+02 Score=26.56 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 440 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 440 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
+-.|+.+..-..-|..-|.+...+|..-+..++.|...+++|.+.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778889999999999999999999999999888774
No 477
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.90 E-value=43 Score=27.32 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=20.4
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 538 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
|++-+-|+..-+++...+.++.+| .++|+.|+..|..+|
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E-------~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKE-------NEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 455555555555555555554444 444555555554444
No 478
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=52.84 E-value=2.1e+02 Score=27.07 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS-------------VVNQLKSEMEKLQEEIKVQLV 490 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~-------------~v~qLk~~mE~Lq~Ei~aQ~~ 490 (776)
+|+.+++=-.++.-.....|++++.-.+.....-..|.+..++-.. .+.....=+.+|...|..|.-
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 85 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQ 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555555555566666665555555544444333322211 222333447777777777777
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063 491 ELESFRNEYANVRLECNAADERAKILA 517 (776)
Q Consensus 491 ~le~l~aErDaAq~E~n~A~ERaK~LA 517 (776)
.++.+..+.+.++....+|.-+-|.|.
T Consensus 86 ~v~~~~~~ve~~r~~~~~a~~~~k~lE 112 (147)
T PRK05689 86 QLTQWTQKVDNARKYWQEKKQRLEALE 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766666553
No 479
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.78 E-value=4.4e+02 Score=30.82 Aligned_cols=140 Identities=20% Similarity=0.132 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 503 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 503 (776)
++.+.|++..+-++.- ..+..|..|-+-.|=++.|+. -.+.+++.++...+.++. ..-.+.++-.+.++|
T Consensus 27 ~~~~~i~q~~q~~~l~------~~ee~e~~~~~~~A~~~~~~k--kel~~~~~q~~~~k~~~~--~~~~eqi~~~~~~~q 96 (438)
T COG4487 27 ARYKQIEQEDQSRILN------TLEEFEKEANEKRAQYRSAKK--KELSQLEEQLINQKKEQK--NLFNEQIKQFELALQ 96 (438)
T ss_pred HHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4555666655554433 334445555555555666666 344444444444432211 111223333334444
Q ss_pred HhhhHHHH--H-HHHHHHHHHHHHHHHHHHHhHhhh-hHHHhhhhHHHHHHHHHHHH-----------hHHHhhhhHHHH
Q 004063 504 LECNAADE--R-AKILASEVIGLEEKALRLRSNELK-LERQLENSQSEISSYKKKIS-----------SLEKERQDFQST 568 (776)
Q Consensus 504 ~E~n~A~E--R-aK~LAaEVV~LEek~lqLRS~eLK-leKElE~l~~Er~S~~~q~s-----------si~kER~~l~st 568 (776)
-+.+.+.. + ++.=..||+.|+.++..+.-..-| ++++++.++-+|+..+.+.. +|+.+|......
T Consensus 97 ~e~~~~~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~q 176 (438)
T COG4487 97 DEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQ 176 (438)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444433 3 233356778888877766655555 56666666666555443332 367778777777
Q ss_pred HHHHH
Q 004063 569 IEALQ 573 (776)
Q Consensus 569 IdaLQ 573 (776)
++.-+
T Consensus 177 l~~~~ 181 (438)
T COG4487 177 LHEAN 181 (438)
T ss_pred HHHhH
Confidence 76654
No 480
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.73 E-value=33 Score=37.83 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 004063 423 AALEQHIEDLTQE 435 (776)
Q Consensus 423 aaLqqhIeDLT~E 435 (776)
+-|-++|||+...
T Consensus 43 ~~~~~~~E~~Kk~ 55 (370)
T PF02994_consen 43 SYLIMMLEDFKKD 55 (370)
T ss_dssp -------------
T ss_pred hHHHHHHHHhhhh
Confidence 4566778877664
No 481
>PRK00736 hypothetical protein; Provisional
Probab=52.14 E-value=1.5e+02 Score=25.94 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 004063 566 QSTIEALQEEKKMMQSKLRKASGS 589 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~asa~ 589 (776)
+..|++|+.+.++|..||+....+
T Consensus 32 q~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 32 WKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 367889999999999999975543
No 482
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=52.14 E-value=5.1e+02 Score=31.39 Aligned_cols=183 Identities=19% Similarity=0.179 Sum_probs=86.1
Q ss_pred cCCCCCCCcCCCCcccc-CCCccccccCCCccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 375 SNIPSAFDYLGNPTVST-SDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 453 (776)
Q Consensus 375 sn~~s~~d~s~~p~v~~-~n~v~~~~~~~dE~~~e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsL 453 (776)
.+.|+.|..+-+++-.. +|+- +...+ +..-+.++.+ ++-+..|-.+|..+-+-....+++..+|
T Consensus 307 ~csPss~n~~ET~STl~fg~ra-k~ikN-------------~v~~n~e~~~-e~~~r~~e~~kd~~~~~~~~~~~~~~sl 371 (607)
T KOG0240|consen 307 CCSPSSLNEAETKSTLRFGNRA-KTIKN-------------TVWVNLELTA-EEWKRKLEKKKDKNVALKEELEKLRNSL 371 (607)
T ss_pred ecCCccccccccccchhhcccc-ccccc-------------hhhhhhHhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67788887776665431 1221 10111 1222333433 5678889999999999999999988888
Q ss_pred H----HhhhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 454 A----AENSSLTDSYNQQR-SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 454 a----~ENsaLt~~yNqQ~-~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
. .|.-.-..+++..- ..++....+.+ ..+..+..++..+-..-.++.+.|+.++...-.++.
T Consensus 372 ~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n 438 (607)
T KOG0240|consen 372 KRWRNGEEVKEDEDFSLKEEAKMSAILSEEE-------------MSITKLKGSLEEEEDILTERIESLYQQLDQKDDQIN 438 (607)
T ss_pred hhhcccCcccchhhhhHHHHHHhhhhhhhhh-------------hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 44444445555222 22222111110 011111111112222334445555555444444444
Q ss_pred HHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 529 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 529 qLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
+.=--..|++-++-.-.+-....++.+.-++.+=..+|..+++-+.|.+....+|-.
T Consensus 439 ~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~e 495 (607)
T KOG0240|consen 439 KQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEE 495 (607)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222222222223444555555555555555666665555555555554
No 483
>KOG1574 consensus Predicted cell growth/differentiation regulator, contains RA domain [Extracellular structures]
Probab=51.71 E-value=1.3e+02 Score=34.12 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=81.7
Q ss_pred ccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 410 QHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 410 ~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
+..|..-+++.||.- .+..-+-+.++++.+. |.+-+++.+.|..|-+-+...|+--.- .+ .+|+++.|
T Consensus 196 ~~~~~~ieq~~d~q~~~~~q~~~L~~~~~~~~l~e~--l~q~r~l~~eL~~e~e~~e~~~~p~~e---~~--~~erv~~e 268 (375)
T KOG1574|consen 196 EEEALRIDQDRDFQIESRSQVQTLSETDNQEDLEEY--LKQIRELNKELQAEEELLEAAGPPEPE---AL--LIERVKTE 268 (375)
T ss_pred hhHHhhchhhhhccccchhhHHHhhhhhhHHHHHHH--HHHHHHHHHHHhhhHhhhcccCCCchh---hh--hHHHHhhH
Confidence 444677778888762 1223344456677666 888888888888886655444443221 12 28889999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 485 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 485 i~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
++.|...-..+..-..++...+..+.-+....+.|+..|-.+..++=..++
T Consensus 269 L~~s~~~~~~l~~~l~av~r~l~~~~~~lq~k~~Ele~l~~el~q~~l~q~ 319 (375)
T KOG1574|consen 269 LATSVKIGLRLERSLEAVNRSLKASLRVLECKKRELETLAKELVQLNLVQF 319 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 998888888887778888888888888888888888888777666644433
No 484
>PRK14160 heat shock protein GrpE; Provisional
Probab=51.63 E-value=90 Score=32.72 Aligned_cols=47 Identities=30% Similarity=0.238 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 517 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA 517 (776)
+.+|+.+++.|+.+++...-.+--+.+||+|++.....-.++++..+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a 109 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA 109 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445566665555544444444444
No 485
>PHA02816 hypothetical protein; Provisional
Probab=51.45 E-value=10 Score=35.04 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=25.5
Q ss_pred ccccccceeEeecCCCCCCCCCccccccc
Q 004063 14 QHHLEADRVRVTDLDGAGTSDGPDKAVVS 42 (776)
Q Consensus 14 ~~~le~~~vr~~d~dgag~sdg~~~~v~~ 42 (776)
+.++.-|+|.+.|+|||.-||....+|++
T Consensus 37 kkaisiervtlldsdgandsdsssntvss 65 (106)
T PHA02816 37 KKAISIERVTLLDSDGANDSDSSSNTVSS 65 (106)
T ss_pred hheeeEEEEEEeccCCCCCccccCccccc
Confidence 45677799999999999999999888887
No 486
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=51.41 E-value=61 Score=35.18 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQRSLEA-SRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 479 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~-s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE 479 (776)
+++.|+.|++.|+.+.+.--.+.-.++. -.+....+++...++..+..++...+.+|+..|+
T Consensus 190 ~~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 190 DDEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 4788999999999887765554444432 2344445555555555555555555555555543
No 487
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=51.35 E-value=76 Score=39.69 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
..+.-|..++++|+.|++.....+.+..-..-+-..-..+|.++...+..+...||+.+.+|+-
T Consensus 842 ~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 842 AETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777777777777777776654433333344566667777788888888888888765
No 488
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=51.28 E-value=96 Score=39.24 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLK 536 (776)
..++..+++.|++++..|..+++...+.......+..+..+-++.+.++...|++++.++|....+
T Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 144 LHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888777777776666666655565656666777888888888888877765554
No 489
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=51.23 E-value=3.5e+02 Score=29.22 Aligned_cols=130 Identities=18% Similarity=0.288 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh--------------hHHH------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQ--------------RSVV------NQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ--------------~~~v------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
.|.+++..-+.-+|.+|.-+..|.+.-+.- .+.+ ...++.++++|.--..++-.++.-+.
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk 140 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444555555555566666555555443220 1111 23335556666655556666666666
Q ss_pred HHHHHHHhhhHHH--HHH-----HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063 498 EYANVRLECNAAD--ERA-----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570 (776)
Q Consensus 498 ErDaAq~E~n~A~--ERa-----K~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 570 (776)
-|..+..+-..|. |.+ -..+.|+.-|++++.+.+-..-|+..+-+....++..++..|. ..+.+..|
T Consensus 141 ~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~------e~m~~~~d 214 (258)
T cd07681 141 GYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYM------EDMEQAFE 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHH
Confidence 6666643333332 222 1234677777777777777777777777766666666666666 34677888
Q ss_pred HHH
Q 004063 571 ALQ 573 (776)
Q Consensus 571 aLQ 573 (776)
.+|
T Consensus 215 ~~Q 217 (258)
T cd07681 215 ICQ 217 (258)
T ss_pred HHH
Confidence 888
No 490
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=51.02 E-value=4.5e+02 Score=31.28 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004063 433 TQEKFALQRSLEASRALSESLAAENSS 459 (776)
Q Consensus 433 T~EKfaLqR~L~~s~~l~EsLa~ENsa 459 (776)
|+-|-.|---++++++=...|..|.+-
T Consensus 301 tes~e~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 301 TESREGLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444
No 491
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.02 E-value=88 Score=31.89 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
..-....+.+..|...|++++.+|+..--.++++++.+..+...+...|+
T Consensus 93 ~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 93 KTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555666666666666666655555556665555555555555555
No 492
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.01 E-value=30 Score=29.34 Aligned_cols=39 Identities=31% Similarity=0.280 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
.+++|+.+-.++.++|..|...|-.|-..|.+++..+|+
T Consensus 12 klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 12 KLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999999988765
No 493
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.81 E-value=1.8e+02 Score=25.74 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063 440 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 440 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
.+-|.---+...+|-.|-+.|...=-.....|..|+..+..++.++......++..-.+.++
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445556666666666666666666666666666665554444444444443333
No 494
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=50.69 E-value=3.3e+02 Score=28.87 Aligned_cols=156 Identities=17% Similarity=0.237 Sum_probs=83.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------------hhhHHHHHHHHhhHHHHHHHHHHHH
Q 004063 417 KHNEDFAALEQHIEDLTQEKFALQRSLE----ASRALSESLAA------------ENSSLTDSYNQQRSVVNQLKSEMEK 480 (776)
Q Consensus 417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~----~s~~l~EsLa~------------ENsaLt~~yNqQ~~~v~qLk~~mE~ 480 (776)
..|+-|.-..+.|++|-.-=-.|.+++. +-++|+..+++ ++.+|.+-+.+-+.+ ...+..
T Consensus 19 E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev----~~~i~~ 94 (234)
T cd07665 19 ESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEV----EEKIEQ 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH----HHHHHH
Confidence 3355666666666666544333333332 33455554432 455666666655444 444444
Q ss_pred HHHHHHHH-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH-----HhhhhHHHHHHHHHH
Q 004063 481 LQEEIKVQ-LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER-----QLENSQSEISSYKKK 554 (776)
Q Consensus 481 Lq~Ei~aQ-~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleK-----ElE~l~~Er~S~~~q 554 (776)
+.+....| .+.+...-.||-++...+..|-.+=..+=.-...++..+.+.|...-|+.. -+..+..|+..++++
T Consensus 95 ~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k 174 (234)
T cd07665 95 LHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESR 174 (234)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 44433333 344555567777777777666544333333445556666666666555532 233355566666666
Q ss_pred HHhHHHhhhh----HHHHHHHHHHHH
Q 004063 555 ISSLEKERQD----FQSTIEALQEEK 576 (776)
Q Consensus 555 ~ssi~kER~~----l~stIdaLQEEK 576 (776)
+..+.++-++ +..+|++.++||
T Consensus 175 ~~~a~~~fe~is~~ik~El~rFe~er 200 (234)
T cd07665 175 VTQYERDFERISATVRKEVIRFEKEK 200 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655554433 456677777776
No 495
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=50.60 E-value=72 Score=29.09 Aligned_cols=42 Identities=29% Similarity=0.504 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhH
Q 004063 673 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 714 (776)
Q Consensus 673 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQR 714 (776)
|..|...|.+|-..|-....+|.+|+..|.|++++|...-..
T Consensus 41 i~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 41 IQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888999999999999999999999999999865433
No 496
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=50.37 E-value=6.4e+02 Score=32.06 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------HHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-----------------SLTDSYNQQRSVVNQLKSEMEKLQE 483 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-----------------aLt~~yNqQ~~~v~qLk~~mE~Lq~ 483 (776)
+...|.||+-|||.+--.|.+..+.=.+=++-|...++ +.-..--.++..+...+.-+++|.-
T Consensus 621 d~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~ 700 (984)
T COG4717 621 DLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELND 700 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHh-hhhHHHHHHHHHHHHhHHHhh
Q 004063 484 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL-ENSQSEISSYKKKISSLEKER 562 (776)
Q Consensus 484 Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKEl-E~l~~Er~S~~~q~ssi~kER 562 (776)
++++++... +.|... ..+|..|+.+..=.++=+..-+.+-+.-|...+-++.+- ....-|...-..+-+.-++|=
T Consensus 701 ~L~ae~~~~---~kei~d-Lfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~ 776 (984)
T COG4717 701 ELRAELELH---RKEILD-LFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEEL 776 (984)
T ss_pred HHHHHHHHH---HHHHHH-HHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 004063 563 QDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 563 ~~l~stIdaLQEEKklLqSKLR 584 (776)
.-+...+|++-||...+++.++
T Consensus 777 ~~lEe~~d~~~ee~~el~a~v~ 798 (984)
T COG4717 777 ALLEEAIDALDEEVEELHAQVA 798 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK14147 heat shock protein GrpE; Provisional
Probab=50.26 E-value=2.2e+02 Score=28.90 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
+.......|+.+++.|+.+++...-.+--+.+|++|++.....-.++++..+. ++=+..+-
T Consensus 15 ~~~~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~-------------------~~~~~~lL 75 (172)
T PRK14147 15 QNPPETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFAN-------------------EKLLGELL 75 (172)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHh
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 546 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 546 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
.=++.+.+.+..+..+-..+..=|+-...+..-.-.++
T Consensus 76 pv~DnlerAl~~~~~~~~~l~~Gv~mi~k~l~~~L~~~ 113 (172)
T PRK14147 76 PVFDSLDAGLTAAGTEPSPLRDGLELTYKQLLKVAADN 113 (172)
T ss_pred hhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHC
No 498
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.14 E-value=3e+02 Score=28.18 Aligned_cols=160 Identities=10% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESFRNEYANV 502 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~-Lq~Ei~aQ~~~le~l~aErDaA 502 (776)
.+++-=++|.+=|-+|-+.++..+.+-..+.+-...+.+.+++-...+..=.+++.+ .=.+.+.+...++.|..+++..
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~ 111 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAV 111 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH------------------HhhhhHHHHHHHHHHHHhHHHh-hh
Q 004063 503 RLECNAADERAKILASEVIGLEEKALRLRSNELKLER------------------QLENSQSEISSYKKKISSLEKE-RQ 563 (776)
Q Consensus 503 q~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleK------------------ElE~l~~Er~S~~~q~ssi~kE-R~ 563 (776)
+..+.....+...|..++..+..+-..|....-++.. .++++...+...+.+..+.... .+
T Consensus 112 ~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~~~~~ 191 (219)
T TIGR02977 112 EETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDLGRKP 191 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q ss_pred hHHHHHHH------HHHHHHHHHHHH
Q 004063 564 DFQSTIEA------LQEEKKMMQSKL 583 (776)
Q Consensus 564 ~l~stIda------LQEEKklLqSKL 583 (776)
.+...++. ..+|+..|..++
T Consensus 192 ~l~~~l~~l~~~~~vd~eLa~LK~~~ 217 (219)
T TIGR02977 192 SLEDEFAELEADDEIERELAALKAKM 217 (219)
T ss_pred CHHHHHHHhcCCChHHHHHHHHHhhh
No 499
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.08 E-value=88 Score=37.61 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 004063 491 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK 560 (776)
Q Consensus 491 ~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k 560 (776)
.+..++.=++....|+.+-..+-++|.+|+.++--++..++-.-...+-||+.|+-+++.++.+++.++.
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
No 500
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=50.02 E-value=1.8e+02 Score=34.22 Aligned_cols=112 Identities=11% Similarity=0.234 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
+....+++++.++++.++...+-...|.. +.+.+.+++..++.+...=.-=.+.....+++-++ .++++..+
T Consensus 161 ~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~l-------k~e~~~~~ 232 (555)
T TIGR03545 161 KTVETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKL-------KKEGKADK 232 (555)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-------HHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 546 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 546 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
..+.++.++++ .++.++..-+.+|..-.+.=-.+|++..+
T Consensus 233 ~~i~~~~~~l~---~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 233 QKIKSAKNDLQ---NDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHHHhccHhHHHHHHHHhC
Done!