Query 004063
Match_columns 776
No_of_seqs 28 out of 30
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 13:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.4 3.3E-07 1.1E-11 107.4 8.5 54 667-720 1112-1165(1184)
2 1i84_S Smooth muscle myosin he 98.3 1.7E-06 5.9E-11 101.4 11.5 51 667-717 1084-1134(1184)
3 1c1g_A Tropomyosin; contractIl 98.3 0.0021 7E-08 58.9 31.9 19 424-442 10-28 (284)
4 1c1g_A Tropomyosin; contractIl 98.1 0.006 2.1E-07 55.8 35.0 110 421-530 21-130 (284)
5 3na7_A HP0958; flagellar bioge 97.5 0.02 6.8E-07 57.0 22.3 128 427-554 18-147 (256)
6 3vkg_A Dynein heavy chain, cyt 97.2 0.024 8.1E-07 73.6 24.2 152 409-560 1887-2077(3245)
7 3na7_A HP0958; flagellar bioge 97.2 0.069 2.4E-06 53.1 21.8 131 434-564 18-150 (256)
8 3vkg_A Dynein heavy chain, cyt 97.2 0.014 4.8E-07 75.6 20.9 152 428-579 1935-2103(3245)
9 3oja_B Anopheles plasmodium-re 97.1 0.0033 1.1E-07 67.0 13.1 50 450-499 444-493 (597)
10 3o0z_A RHO-associated protein 97.0 0.13 4.5E-06 50.2 21.4 156 419-591 5-160 (168)
11 3oja_B Anopheles plasmodium-re 96.9 0.013 4.4E-07 62.5 14.9 45 463-507 450-494 (597)
12 2dfs_A Myosin-5A; myosin-V, in 96.6 0.051 1.7E-06 64.4 18.1 37 495-531 982-1018(1080)
13 2v71_A Nuclear distribution pr 96.5 0.072 2.5E-06 52.6 15.4 98 483-587 10-115 (189)
14 2dfs_A Myosin-5A; myosin-V, in 96.4 0.068 2.3E-06 63.3 17.5 69 502-573 975-1043(1080)
15 3haj_A Human pacsin2 F-BAR; pa 95.7 0.6 2.1E-05 50.1 19.2 102 438-539 78-206 (486)
16 2fxo_A Myosin heavy chain, car 95.6 0.6 2E-05 42.7 16.3 59 523-581 67-125 (129)
17 3u1c_A Tropomyosin alpha-1 cha 95.6 0.37 1.3E-05 42.8 14.5 97 469-579 2-98 (101)
18 3abh_A Pacsin2, protein kinase 95.4 0.53 1.8E-05 46.9 16.4 75 438-512 85-179 (312)
19 2x3v_A Syndapin I, protein kin 95.0 3.3 0.00011 41.6 21.5 141 439-585 77-248 (337)
20 3u59_A Tropomyosin beta chain; 94.9 0.71 2.4E-05 40.7 14.0 95 470-578 3-97 (101)
21 3ol1_A Vimentin; structural ge 94.8 0.52 1.8E-05 42.8 13.1 18 533-550 84-101 (119)
22 3aco_A Pacsin2, protein kinase 94.7 1 3.5E-05 45.8 16.7 130 438-573 85-241 (350)
23 4dyl_A Tyrosine-protein kinase 94.6 5.5 0.00019 41.9 23.3 48 654-702 293-340 (406)
24 3a7p_A Autophagy protein 16; c 94.5 0.46 1.6E-05 45.8 12.6 81 453-533 59-139 (152)
25 3hnw_A Uncharacterized protein 94.2 0.33 1.1E-05 45.5 10.8 83 495-585 53-135 (138)
26 2jee_A YIIU; FTSZ, septum, coi 94.1 0.37 1.3E-05 42.3 10.1 66 522-587 10-75 (81)
27 2efk_A CDC42-interacting prote 94.1 4.8 0.00016 39.3 22.1 78 438-515 66-155 (301)
28 3s4r_A Vimentin; alpha-helix, 93.4 0.61 2.1E-05 41.1 10.4 71 511-583 23-93 (93)
29 2v0o_A FCHO2, FCH domain only 93.2 4 0.00014 39.4 16.6 36 448-483 80-115 (276)
30 3oja_A Leucine-rich immune mol 92.9 2.7 9.3E-05 44.2 16.3 55 410-465 344-398 (487)
31 3q8t_A Beclin-1; autophagy, AT 92.8 2.9 9.9E-05 37.0 13.8 75 494-575 15-89 (96)
32 2v71_A Nuclear distribution pr 92.7 8.4 0.00029 38.2 19.8 36 549-584 119-154 (189)
33 2efl_A Formin-binding protein 92.6 8.1 0.00028 37.6 22.0 46 470-515 117-162 (305)
34 2eqb_B RAB guanine nucleotide 92.3 2.6 9E-05 38.1 12.9 89 470-578 6-94 (97)
35 3hnw_A Uncharacterized protein 92.0 1 3.5E-05 42.2 10.4 9 393-401 8-16 (138)
36 1ic2_A Tropomyosin alpha chain 91.7 1.3 4.4E-05 37.7 9.8 34 545-585 40-73 (81)
37 2i1j_A Moesin; FERM, coiled-co 91.2 0.15 5.1E-06 56.6 4.6 77 509-585 375-451 (575)
38 3q8t_A Beclin-1; autophagy, AT 91.1 4.1 0.00014 36.1 12.7 91 469-573 4-94 (96)
39 2ocy_A RAB guanine nucleotide 91.0 12 0.0004 36.2 19.1 86 493-584 61-146 (154)
40 2efr_A General control protein 90.5 13 0.00044 35.8 20.5 47 512-558 78-124 (155)
41 3i00_A HIP-I, huntingtin-inter 90.3 0.77 2.6E-05 42.4 7.7 61 477-547 16-76 (120)
42 2v4h_A NF-kappa-B essential mo 90.0 4.5 0.00016 37.3 12.3 85 497-585 24-108 (110)
43 1wt6_A Myotonin-protein kinase 90.0 1.3 4.5E-05 39.0 8.4 57 476-532 14-73 (81)
44 3m3w_A Pacsin3, protein kinase 89.8 2.2 7.5E-05 43.4 11.3 68 438-505 76-163 (320)
45 1x79_B RAB GTPase binding effe 89.4 4.8 0.00017 37.1 12.1 102 468-582 5-106 (112)
46 3oja_A Leucine-rich immune mol 89.3 13 0.00043 39.1 16.9 12 22-33 36-47 (487)
47 3u59_A Tropomyosin beta chain; 89.1 6.1 0.00021 34.7 12.2 38 447-484 22-59 (101)
48 3i2w_A Syndapin, LD46328P; EFC 88.0 9.3 0.00032 37.6 14.1 134 437-573 63-219 (290)
49 3ol1_A Vimentin; structural ge 87.6 16 0.00055 33.1 14.4 85 420-532 20-104 (119)
50 3swk_A Vimentin; cytoskeleton, 86.7 5.1 0.00017 34.8 10.0 20 560-579 63-82 (86)
51 2fxo_A Myosin heavy chain, car 86.4 19 0.00066 32.8 15.9 28 505-532 63-90 (129)
52 2no2_A HIP-I, huntingtin-inter 85.2 21 0.00073 32.2 14.0 97 428-525 3-103 (107)
53 3u1c_A Tropomyosin alpha-1 cha 85.2 20 0.00067 31.8 14.3 62 448-509 9-70 (101)
54 3haj_A Human pacsin2 F-BAR; pa 85.1 45 0.0015 35.8 22.1 13 420-432 22-34 (486)
55 3ibp_A Chromosome partition pr 84.9 43 0.0015 35.5 19.4 36 671-706 224-259 (302)
56 1ic2_A Tropomyosin alpha chain 84.6 13 0.00043 31.6 11.3 77 472-562 2-78 (81)
57 2i1j_A Moesin; FERM, coiled-co 84.4 3.2 0.00011 46.1 9.6 99 473-574 328-426 (575)
58 3iox_A AGI/II, PA; alpha helix 84.2 16 0.00053 40.9 14.6 98 474-584 7-104 (497)
59 3tnu_B Keratin, type II cytosk 83.7 19 0.00065 32.7 12.8 63 467-532 34-96 (129)
60 3o0z_A RHO-associated protein 83.6 35 0.0012 33.4 19.0 41 540-580 98-138 (168)
61 2ocy_A RAB guanine nucleotide 83.5 33 0.0011 33.1 18.7 117 457-584 5-132 (154)
62 1go4_E MAD1 (mitotic arrest de 82.8 1.7 5.6E-05 39.5 5.3 75 462-536 12-93 (100)
63 3tnu_B Keratin, type II cytosk 81.8 23 0.00078 32.2 12.6 100 460-569 20-119 (129)
64 3tnu_A Keratin, type I cytoske 81.8 18 0.00063 32.9 12.0 63 467-532 36-98 (131)
65 2wt7_B Transcription factor MA 81.7 9.1 0.00031 34.1 9.5 50 508-558 39-88 (90)
66 2v4h_A NF-kappa-B essential mo 80.1 23 0.00078 32.8 11.8 16 511-526 62-77 (110)
67 3cvf_A Homer-3, homer protein 80.1 10 0.00034 33.2 9.0 51 495-545 4-54 (79)
68 1deq_A Fibrinogen (alpha chain 79.5 41 0.0014 36.7 15.4 28 424-451 64-91 (390)
69 1go4_E MAD1 (mitotic arrest de 79.0 9.6 0.00033 34.6 8.9 29 562-590 70-98 (100)
70 3tnu_A Keratin, type I cytoske 78.9 21 0.00073 32.5 11.4 96 464-569 26-121 (131)
71 3ajw_A Flagellar FLIJ protein; 78.7 35 0.0012 30.3 15.3 38 477-514 75-112 (150)
72 4dk0_A Putative MACA; alpha-ha 77.9 6.9 0.00024 39.2 8.6 29 564-592 133-165 (369)
73 2dnx_A Syntaxin-12; snare, HAB 77.2 43 0.0015 30.6 12.8 100 415-517 5-118 (130)
74 2e7s_A RAB guanine nucleotide 77.0 9.6 0.00033 36.2 8.6 77 499-581 55-131 (135)
75 2e7s_A RAB guanine nucleotide 76.1 4.8 0.00016 38.2 6.4 101 474-581 6-117 (135)
76 2b5u_A Colicin E3; high resolu 76.0 38 0.0013 38.2 14.2 14 570-583 398-411 (551)
77 3bas_A Myosin heavy chain, str 74.8 12 0.0004 32.5 8.0 49 668-716 39-87 (89)
78 3mq9_A Bone marrow stromal ant 74.2 75 0.0026 33.2 15.4 36 424-459 356-391 (471)
79 4dk0_A Putative MACA; alpha-ha 74.1 13 0.00044 37.3 9.3 29 496-524 114-142 (369)
80 3mq7_A Bone marrow stromal ant 73.8 41 0.0014 31.6 11.7 71 431-501 33-103 (121)
81 3fpp_A Macrolide-specific effl 73.8 8.7 0.0003 38.2 7.9 8 745-752 324-331 (341)
82 3mq7_A Bone marrow stromal ant 73.6 53 0.0018 30.8 12.4 77 498-584 33-109 (121)
83 3lay_A Zinc resistance-associa 72.6 14 0.00048 35.9 8.8 22 511-532 113-134 (175)
84 3ghg_A Fibrinogen alpha chain; 71.4 39 0.0013 38.2 13.0 71 426-496 63-137 (562)
85 3cvf_A Homer-3, homer protein 71.0 22 0.00076 31.0 8.8 54 504-564 6-59 (79)
86 3u06_A Protein claret segregat 70.8 7.2 0.00025 41.9 7.0 61 518-592 3-63 (412)
87 3iox_A AGI/II, PA; alpha helix 70.7 62 0.0021 36.3 14.3 32 537-568 71-102 (497)
88 2jee_A YIIU; FTSZ, septum, coi 70.6 22 0.00074 31.3 8.6 69 420-495 6-74 (81)
89 3pe0_A Plectin; cytoskeleton, 70.5 94 0.0032 31.4 17.3 25 652-676 244-268 (283)
90 4etp_A Kinesin-like protein KA 70.1 8.6 0.00029 41.1 7.4 49 517-565 2-50 (403)
91 3i00_A HIP-I, huntingtin-inter 70.1 27 0.00094 32.2 9.7 65 421-502 16-80 (120)
92 3ajw_A Flagellar FLIJ protein; 70.1 59 0.002 28.8 17.5 118 437-556 8-126 (150)
93 3etw_A Adhesin A; antiparallel 69.9 71 0.0024 29.7 13.0 24 533-556 58-81 (119)
94 2efl_A Formin-binding protein 69.7 84 0.0029 30.5 22.8 26 421-446 15-50 (305)
95 3mq9_A Bone marrow stromal ant 69.3 95 0.0032 32.4 14.9 30 558-587 434-463 (471)
96 2v66_B Nuclear distribution pr 68.9 24 0.00082 32.5 9.0 45 543-587 14-62 (111)
97 1f5n_A Interferon-induced guan 68.6 1.3E+02 0.0046 33.7 16.7 18 565-582 565-582 (592)
98 2eqb_B RAB guanine nucleotide 68.1 70 0.0024 29.0 11.9 56 498-553 6-61 (97)
99 4gkw_A Spindle assembly abnorm 67.9 90 0.0031 30.1 21.7 83 416-519 7-89 (167)
100 2p22_C Protein SRN2; endosome, 67.7 98 0.0033 30.4 15.0 23 513-535 130-152 (192)
101 1m1j_B Fibrinogen beta chain; 67.7 98 0.0034 34.3 15.1 47 453-499 105-151 (464)
102 3bas_A Myosin heavy chain, str 67.6 45 0.0015 28.9 10.0 36 495-530 47-82 (89)
103 3m9b_A Proteasome-associated A 67.0 4 0.00014 42.0 3.9 43 538-580 53-95 (251)
104 1m1j_C Fibrinogen gamma chain; 66.6 58 0.002 35.3 12.9 23 507-529 80-102 (409)
105 2efk_A CDC42-interacting prote 66.2 1E+02 0.0034 30.0 23.6 27 420-446 7-43 (301)
106 2wt7_A Proto-oncogene protein 66.1 34 0.0012 27.9 8.5 36 549-584 26-61 (63)
107 1jcd_A Major outer membrane li 65.9 20 0.00069 29.1 7.0 44 463-513 5-48 (52)
108 1hjb_A Ccaat/enhancer binding 65.8 17 0.00058 32.1 7.1 41 500-540 25-65 (87)
109 2b5u_A Colicin E3; high resolu 65.6 1.8E+02 0.0063 32.9 20.5 38 541-585 411-448 (551)
110 3jsv_C NF-kappa-B essential mo 65.6 66 0.0023 29.0 10.9 14 476-489 40-53 (94)
111 1deq_A Fibrinogen (alpha chain 65.1 81 0.0028 34.4 13.4 116 420-536 67-197 (390)
112 4emc_A Monopolin complex subun 65.1 15 0.00051 36.6 7.3 55 430-484 2-56 (190)
113 2efr_A General control protein 64.8 1E+02 0.0035 29.6 22.6 127 439-572 26-152 (155)
114 3a7p_A Autophagy protein 16; c 64.5 74 0.0025 30.8 11.8 57 513-576 70-126 (152)
115 3tul_A Cell invasion protein S 63.8 56 0.0019 31.8 10.8 60 471-530 22-88 (158)
116 3ghg_A Fibrinogen alpha chain; 63.2 94 0.0032 35.3 13.9 19 522-540 135-153 (562)
117 1m1j_B Fibrinogen beta chain; 63.1 1.7E+02 0.0057 32.5 15.7 26 460-485 126-151 (464)
118 1jcd_A Major outer membrane li 61.5 23 0.00079 28.8 6.6 29 450-478 6-34 (52)
119 2no2_A HIP-I, huntingtin-inter 61.1 95 0.0032 28.0 14.8 16 564-579 86-101 (107)
120 3fpp_A Macrolide-specific effl 61.0 20 0.00068 35.6 7.5 16 496-511 113-128 (341)
121 2j69_A Bacterial dynamin-like 60.3 2.2E+02 0.0076 32.0 18.0 16 418-433 308-323 (695)
122 1gu4_A CAAT/enhancer binding p 59.6 24 0.00081 30.5 6.8 44 500-543 25-68 (78)
123 2oto_A M protein; helical coil 59.1 1.1E+02 0.0039 28.3 19.1 110 431-544 26-140 (155)
124 1joc_A EEA1, early endosomal a 57.2 29 0.00098 31.6 7.3 40 678-717 4-43 (125)
125 3m9b_A Proteasome-associated A 57.1 11 0.00037 38.9 4.9 31 451-481 64-94 (251)
126 3m91_A Proteasome-associated A 56.6 26 0.0009 28.3 6.1 35 447-481 15-49 (51)
127 2v0o_A FCHO2, FCH domain only 56.5 1.4E+02 0.0048 28.6 17.4 11 419-429 17-27 (276)
128 3fhn_A Protein transport prote 55.5 33 0.0011 39.7 9.0 29 420-448 10-38 (706)
129 3abh_A Pacsin2, protein kinase 55.1 1.7E+02 0.0057 29.0 21.0 17 412-431 24-40 (312)
130 1oxz_A ADP-ribosylation factor 54.9 1.6E+02 0.0056 28.8 13.0 120 419-559 32-158 (186)
131 3jsv_C NF-kappa-B essential mo 54.4 1.1E+02 0.0038 27.7 10.3 26 560-585 61-86 (94)
132 3htk_A Structural maintenance 54.1 73 0.0025 25.1 8.3 47 439-485 10-56 (60)
133 1wle_A Seryl-tRNA synthetase; 53.9 1E+02 0.0034 34.2 12.2 9 752-760 440-448 (501)
134 3qh9_A Liprin-beta-2; coiled-c 53.3 1.1E+02 0.0037 27.1 9.8 44 513-556 21-64 (81)
135 3cve_A Homer protein homolog 1 53.3 61 0.0021 27.9 8.2 43 503-545 6-48 (72)
136 3qh9_A Liprin-beta-2; coiled-c 52.9 38 0.0013 29.9 6.9 45 539-583 19-63 (81)
137 1l8d_A DNA double-strand break 52.2 1.2E+02 0.0039 26.3 12.3 39 547-585 65-103 (112)
138 1t2k_D Cyclic-AMP-dependent tr 51.3 73 0.0025 25.6 8.0 50 436-485 10-59 (61)
139 2yy0_A C-MYC-binding protein; 51.1 21 0.00071 28.8 4.7 30 692-721 19-48 (53)
140 4ani_A Protein GRPE; chaperone 51.0 39 0.0013 33.9 7.7 98 471-592 61-158 (213)
141 1t2k_D Cyclic-AMP-dependent tr 50.8 95 0.0032 24.9 8.8 34 550-583 26-59 (61)
142 2w83_C C-JUN-amino-terminal ki 50.8 1E+02 0.0035 27.0 9.2 65 515-586 6-70 (77)
143 2w83_C C-JUN-amino-terminal ki 50.0 64 0.0022 28.3 7.8 65 449-527 10-74 (77)
144 3aco_A Pacsin2, protein kinase 49.5 2.2E+02 0.0076 28.8 21.8 17 412-431 24-40 (350)
145 1wt6_A Myotonin-protein kinase 49.4 75 0.0026 28.1 8.2 43 523-579 29-71 (81)
146 3swk_A Vimentin; cytoskeleton, 49.1 1.3E+02 0.0045 26.0 12.0 38 494-531 46-83 (86)
147 1ik9_A DNA repair protein XRCC 49.1 2.1E+02 0.0072 28.4 13.4 34 450-483 134-167 (213)
148 1naf_A ADP-ribosylation factor 49.1 1.9E+02 0.0064 27.8 11.9 102 442-558 33-141 (158)
149 3twe_A Alpha4H; unknown functi 48.6 19 0.00065 25.8 3.6 22 563-584 4-25 (27)
150 2lw1_A ABC transporter ATP-bin 48.3 84 0.0029 26.9 8.4 65 464-530 18-82 (89)
151 3efg_A Protein SLYX homolog; x 48.2 39 0.0013 29.0 6.2 24 566-589 41-64 (78)
152 2ke4_A CDC42-interacting prote 48.2 1.1E+02 0.0037 27.4 9.3 83 411-495 6-88 (98)
153 1wle_A Seryl-tRNA synthetase; 47.7 1.6E+02 0.0056 32.5 12.7 25 563-587 126-150 (501)
154 2zuo_A MVP, major vault protei 47.3 4.4E+02 0.015 31.5 20.3 32 390-430 628-659 (861)
155 3a5t_A Transcription factor MA 47.3 4.3 0.00015 37.1 0.2 50 508-558 49-98 (107)
156 2dq0_A Seryl-tRNA synthetase; 47.3 1.2E+02 0.0042 32.8 11.4 8 753-760 411-418 (455)
157 2f1m_A Acriflavine resistance 47.2 95 0.0032 29.9 9.6 15 496-510 97-111 (277)
158 2xdj_A Uncharacterized protein 46.9 1E+02 0.0035 26.9 8.7 13 469-481 41-53 (83)
159 2wt7_A Proto-oncogene protein 46.4 85 0.0029 25.5 7.8 51 436-486 11-61 (63)
160 1jnm_A Proto-oncogene C-JUN; B 46.0 39 0.0013 27.3 5.7 51 436-486 10-60 (62)
161 3q0x_A Centriole protein; cent 44.6 41 0.0014 34.1 6.8 39 458-496 167-205 (228)
162 4fi5_A Nucleoprotein; structur 43.1 1.6E+02 0.0053 27.5 9.7 71 425-495 24-95 (113)
163 3cve_A Homer protein homolog 1 42.8 1.6E+02 0.0056 25.3 10.3 47 507-560 3-49 (72)
164 3hhm_B NISH2 P85alpha; PI3KCA, 42.2 3.4E+02 0.012 28.9 15.8 52 520-571 207-258 (373)
165 2x3v_A Syndapin I, protein kin 42.2 2.7E+02 0.0094 27.7 23.1 17 412-431 15-31 (337)
166 3ni0_A Bone marrow stromal ant 42.2 1.6E+02 0.0055 26.8 9.4 60 497-556 25-84 (99)
167 1ez3_A Syntaxin-1A; three heli 42.0 1.7E+02 0.0059 25.3 10.2 13 422-434 14-26 (127)
168 3ghg_C Fibrinogen gamma chain; 41.6 1.4E+02 0.0049 32.6 10.8 24 507-530 80-103 (411)
169 2yy0_A C-MYC-binding protein; 41.5 38 0.0013 27.3 4.8 33 553-585 19-51 (53)
170 2f1m_A Acriflavine resistance 41.2 67 0.0023 30.9 7.5 25 568-592 113-141 (277)
171 4etp_A Kinesin-like protein KA 41.0 59 0.002 34.7 7.7 36 493-528 6-41 (403)
172 3qne_A Seryl-tRNA synthetase, 40.9 77 0.0026 35.1 8.7 24 564-587 82-105 (485)
173 4e61_A Protein BIM1; EB1-like 40.1 71 0.0024 29.3 6.9 16 541-556 34-49 (106)
174 1jnm_A Proto-oncogene C-JUN; B 39.8 71 0.0024 25.8 6.3 15 564-578 40-54 (62)
175 3vp9_A General transcriptional 39.3 66 0.0022 28.9 6.5 62 492-556 16-85 (92)
176 2zqm_A Prefoldin beta subunit 38.0 1.9E+02 0.0066 24.8 11.2 40 456-495 7-46 (117)
177 2avr_X Adhesion A; antiparalle 38.0 2.6E+02 0.0088 26.2 13.6 60 516-576 49-108 (119)
178 2b9c_A Striated-muscle alpha t 38.0 2.6E+02 0.009 26.3 11.1 20 567-586 101-120 (147)
179 3onj_A T-snare VTI1; helix, HA 37.8 2E+02 0.007 25.0 12.1 24 539-562 72-96 (97)
180 3s4r_A Vimentin; alpha-helix, 37.2 1.5E+02 0.0053 25.9 8.5 37 538-574 55-91 (93)
181 1ci6_A Transcription factor AT 37.0 1.2E+02 0.0043 24.7 7.4 36 548-583 25-60 (63)
182 3lss_A Seryl-tRNA synthetase; 36.9 2.1E+02 0.0072 31.7 11.4 20 545-564 117-136 (484)
183 4ani_A Protein GRPE; chaperone 36.8 2E+02 0.007 28.8 10.3 30 516-545 64-93 (213)
184 2lw1_A ABC transporter ATP-bin 36.6 1.8E+02 0.006 24.9 8.6 63 656-718 14-82 (89)
185 2oto_A M protein; helical coil 36.6 2.6E+02 0.0089 25.9 17.3 14 452-465 26-39 (155)
186 3mtu_A Tropomyosin alpha-1 cha 36.6 70 0.0024 27.1 6.0 32 553-584 9-40 (75)
187 4e61_A Protein BIM1; EB1-like 36.5 97 0.0033 28.4 7.2 21 564-584 29-49 (106)
188 4h22_A Leucine-rich repeat fli 36.2 1.7E+02 0.0059 26.8 8.7 10 490-499 82-91 (103)
189 2dq0_A Seryl-tRNA synthetase; 36.1 2.2E+02 0.0076 30.9 11.3 24 564-587 80-103 (455)
190 3uul_A Utrophin; spectrin repe 36.1 1.8E+02 0.0063 24.0 10.6 29 470-498 37-65 (118)
191 3gp4_A Transcriptional regulat 36.0 2.5E+02 0.0087 25.6 11.1 22 509-530 79-100 (142)
192 2v66_B Nuclear distribution pr 35.7 2.6E+02 0.009 25.7 15.1 13 472-484 6-18 (111)
193 2nrj_A HBL B protein; enteroto 35.7 3E+02 0.01 28.8 11.9 30 457-486 164-193 (346)
194 4avm_A Bridging integrator 2; 35.5 3.3E+02 0.011 26.7 12.5 35 546-580 118-152 (237)
195 2w6a_A ARF GTPase-activating p 35.4 92 0.0032 26.4 6.3 33 553-585 20-52 (63)
196 3u06_A Protein claret segregat 35.1 85 0.0029 33.7 7.8 36 497-532 3-38 (412)
197 3va9_A Sensor histidine kinase 35.0 2.6E+02 0.0089 25.4 12.0 31 506-536 118-148 (164)
198 1ses_A Seryl-tRNA synthetase; 34.7 1.3E+02 0.0046 32.1 9.2 70 506-588 30-99 (421)
199 3htk_A Structural maintenance 34.2 1.7E+02 0.0057 22.9 8.1 14 498-511 34-47 (60)
200 2dq3_A Seryl-tRNA synthetase; 34.0 1.1E+02 0.0039 32.7 8.5 12 752-763 389-400 (425)
201 3mtu_A Tropomyosin alpha-1 cha 33.4 1E+02 0.0035 26.2 6.5 32 469-500 2-33 (75)
202 2p4v_A Transcription elongatio 33.4 1E+02 0.0035 29.0 7.2 13 471-483 11-23 (158)
203 3or1_C Sulfite reductase GAMA; 33.3 17 0.00057 33.0 1.8 15 756-770 77-91 (105)
204 1grj_A GREA protein; transcrip 32.9 1.5E+02 0.0051 27.7 8.2 13 471-483 11-23 (158)
205 2xdj_A Uncharacterized protein 32.7 2.5E+02 0.0085 24.4 9.6 45 532-583 20-64 (83)
206 3lss_A Seryl-tRNA synthetase; 32.5 1.2E+02 0.0043 33.4 8.7 27 562-588 113-139 (484)
207 1f5n_A Interferon-induced guan 32.4 5.8E+02 0.02 28.7 20.4 28 558-585 535-562 (592)
208 3m91_A Proteasome-associated A 32.3 1.2E+02 0.0041 24.5 6.3 21 510-530 8-28 (51)
209 1m1j_C Fibrinogen gamma chain; 32.2 5.1E+02 0.018 28.1 13.2 10 420-429 38-47 (409)
210 2ic9_A Nucleocapsid protein; h 32.1 2.9E+02 0.01 25.1 10.1 66 425-490 7-73 (96)
211 4i0x_B ESAT-6-like protein MAB 31.7 2.4E+02 0.0081 23.9 10.9 53 420-472 11-66 (103)
212 3swf_A CGMP-gated cation chann 31.6 2.2E+02 0.0076 24.7 8.3 52 474-535 5-56 (74)
213 2yfa_A MCPS, methyl-accepting 31.5 3.3E+02 0.011 25.5 19.7 24 411-434 39-63 (258)
214 4ad8_A DNA repair protein RECN 30.7 5.2E+02 0.018 27.5 14.6 13 470-482 228-240 (517)
215 2k48_A Nucleoprotein; viral pr 30.4 3.3E+02 0.011 25.2 11.3 68 422-489 34-102 (107)
216 3qwe_A GMIP, GEM-interacting p 30.4 4.8E+02 0.016 27.0 17.8 41 494-534 116-156 (279)
217 2f23_A Anti-cleavage anti-GREA 30.0 89 0.003 29.1 6.1 61 419-485 9-69 (156)
218 1gqe_A Release factor 2, RF2; 29.4 4.9E+02 0.017 28.0 12.4 42 490-531 25-71 (365)
219 1ci6_A Transcription factor AT 29.3 1.9E+02 0.0065 23.6 7.2 25 507-531 19-43 (63)
220 2ve7_A Kinetochore protein HEC 29.2 85 0.0029 32.5 6.4 15 569-583 219-233 (315)
221 3l4q_C Phosphatidylinositol 3- 28.4 4.3E+02 0.015 25.8 15.4 52 522-573 100-151 (170)
222 2dq3_A Seryl-tRNA synthetase; 28.2 74 0.0025 34.1 5.9 71 505-586 31-101 (425)
223 2p4v_A Transcription elongatio 27.6 1.3E+02 0.0043 28.3 6.8 31 419-449 8-39 (158)
224 3he5_B Synzip2; heterodimeric 27.4 2.1E+02 0.0072 23.0 6.8 20 534-553 26-45 (52)
225 1fxk_A Prefoldin; archaeal pro 27.4 2.8E+02 0.0096 23.4 10.7 37 459-495 5-41 (107)
226 3s9g_A Protein hexim1; cyclin 27.3 3.2E+02 0.011 25.1 8.9 49 430-485 33-81 (104)
227 1lwu_C Fibrinogen gamma chain; 27.2 1.4E+02 0.0049 31.5 7.7 50 471-527 7-56 (323)
228 4b4t_M 26S protease regulatory 27.1 40 0.0014 36.4 3.7 18 745-762 294-311 (434)
229 1sjj_A Actinin; 3-helix bundle 26.9 7.1E+02 0.024 27.9 15.2 31 451-481 407-437 (863)
230 2zvf_A Alanyl-tRNA synthetase; 26.8 1.5E+02 0.0053 27.0 7.1 34 692-725 32-65 (171)
231 2qdq_A Talin-1; dimerisation d 26.5 74 0.0025 26.0 4.2 26 526-551 9-34 (50)
232 1nkp_B MAX protein, MYC proto- 26.4 27 0.00094 29.3 1.8 60 419-485 18-77 (83)
233 1joc_A EEA1, early endosomal a 26.3 2.7E+02 0.0093 25.2 8.5 24 470-493 19-42 (125)
234 2z5i_A TM, general control pro 26.1 87 0.003 25.1 4.6 38 470-507 13-50 (52)
235 1gd2_E Transcription factor PA 25.8 1.9E+02 0.0063 24.6 6.7 9 520-528 31-39 (70)
236 1nkp_A C-MYC, MYC proto-oncoge 25.4 47 0.0016 28.7 3.1 63 419-481 22-85 (88)
237 2zqm_A Prefoldin beta subunit 25.1 3.2E+02 0.011 23.3 11.8 40 549-588 73-112 (117)
238 2zvf_A Alanyl-tRNA synthetase; 24.8 1.1E+02 0.0038 27.9 5.7 10 664-673 157-166 (171)
239 2z5i_A TM, general control pro 24.8 1.7E+02 0.0058 23.4 6.0 31 505-535 6-36 (52)
240 1t3j_A Mitofusin 1; coiled coi 24.7 2.6E+02 0.0088 25.3 7.8 12 427-438 16-27 (96)
241 1o3x_A ADP-ribosylation factor 24.7 2.4E+02 0.0081 26.5 7.9 103 442-559 24-133 (140)
242 1hjb_A Ccaat/enhancer binding 24.2 3.7E+02 0.013 23.6 9.2 35 554-588 44-78 (87)
243 3s9g_A Protein hexim1; cyclin 24.1 3.9E+02 0.013 24.5 8.9 25 459-483 34-58 (104)
244 2kes_A Synphilin-1; synphillin 23.8 1.4E+02 0.0047 24.0 5.2 32 525-556 4-35 (48)
245 2dgc_A Protein (GCN4); basic d 23.7 1.1E+02 0.0037 25.2 4.8 36 681-716 26-61 (63)
246 2fic_A Bridging integrator 1; 23.4 5E+02 0.017 24.9 18.6 27 491-517 145-171 (251)
247 2kes_A Synphilin-1; synphillin 23.2 1.6E+02 0.0056 23.6 5.5 35 512-546 5-39 (48)
248 3kp1_E D-ornithine aminomutase 23.1 32 0.0011 32.3 1.7 42 418-464 3-44 (121)
249 4b6x_A AVRRPS4, avirulence pro 23.1 4E+02 0.014 23.8 8.5 59 480-547 26-84 (90)
250 2wq1_A General control protein 23.1 1.2E+02 0.0041 23.0 4.4 28 423-450 3-30 (33)
251 1g73_A SMAC/diablo, second mit 22.8 5.5E+02 0.019 25.2 13.5 110 428-545 41-157 (162)
252 2f23_A Anti-cleavage anti-GREA 22.7 2.3E+02 0.0079 26.3 7.5 21 508-528 50-70 (156)
253 2xnx_M M protein, M1-BC1; cell 22.6 94 0.0032 30.0 4.8 23 560-582 115-137 (146)
254 4b4t_K 26S protease regulatory 22.5 1E+02 0.0034 33.3 5.7 13 679-691 218-230 (428)
255 2xs1_A Programmed cell death 6 22.4 8.8E+02 0.03 27.4 16.2 13 470-482 554-566 (704)
256 3zwh_Q Myosin-9; Ca-binding pr 22.3 30 0.001 27.6 1.1 27 502-528 4-30 (45)
257 2xnx_M M protein, M1-BC1; cell 22.3 5.4E+02 0.018 24.9 10.6 44 549-592 69-112 (146)
258 3iyk_A VP5; icosahedral virus; 22.2 9E+02 0.031 27.5 17.0 64 425-488 95-158 (526)
259 4dzn_A Coiled-coil peptide CC- 22.2 1.4E+02 0.0047 22.3 4.5 20 470-489 3-22 (33)
260 3zx6_A HAMP, methyl-accepting 22.2 6.4E+02 0.022 25.7 17.0 63 418-483 32-101 (341)
261 2j69_A Bacterial dynamin-like 21.8 8.9E+02 0.03 27.2 18.5 51 672-722 601-653 (695)
262 3uun_A Dystrophin; triple heli 21.8 3.3E+02 0.011 22.3 13.4 29 470-498 37-65 (119)
263 1s94_A S-syntaxin; three helix 21.7 4.1E+02 0.014 24.7 9.0 20 513-532 128-147 (180)
264 3iv1_A Tumor susceptibility ge 21.5 4.1E+02 0.014 23.2 9.8 62 469-530 3-65 (78)
265 3c98_B Syntaxin-1A; protein co 21.5 5E+02 0.017 24.3 13.3 28 452-482 33-60 (279)
266 3zx6_A HAMP, methyl-accepting 21.5 6.5E+02 0.022 25.6 21.0 25 686-710 259-283 (341)
267 2l7b_A Apolipoprotein E, APO-E 21.5 1.4E+02 0.0048 31.1 6.3 42 515-556 111-153 (307)
268 1few_A Second mitochondria-der 21.4 6.2E+02 0.021 25.3 16.3 110 428-545 41-157 (184)
269 2dgc_A Protein (GCN4); basic d 21.4 2.1E+02 0.0071 23.5 6.1 24 501-524 20-43 (63)
270 1r8e_A Multidrug-efflux transp 21.2 3.8E+02 0.013 25.7 8.9 19 749-767 149-169 (278)
271 3uux_B Mitochondrial division 21.1 5.4E+02 0.019 26.5 10.3 36 512-547 171-206 (242)
272 2xv5_A Lamin-A/C; structural p 20.6 3.7E+02 0.013 22.9 7.6 49 516-571 3-51 (74)
273 4ioe_A Secreted protein ESXB; 20.4 3.4E+02 0.012 21.8 10.8 64 421-484 10-78 (93)
274 1ik9_A DNA repair protein XRCC 20.3 6.4E+02 0.022 25.0 13.1 67 412-485 110-176 (213)
275 2zuo_A MVP, major vault protei 20.2 1.2E+03 0.04 28.0 21.8 24 562-585 774-797 (861)
276 2y7c_A Type-1 restriction enzy 20.0 1.6E+02 0.0053 29.7 6.1 38 678-715 376-413 (464)
277 2nps_D Syntaxin-6; vesicle fus 20.0 3.9E+02 0.013 22.4 8.0 52 467-518 24-75 (82)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.41 E-value=3.3e-07 Score=107.35 Aligned_cols=54 Identities=30% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063 667 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720 (776)
Q Consensus 667 dsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts 720 (776)
..+..-+.+|+.+.+++...|..+.....++.....+|.++|+.++++||-+-.
T Consensus 1112 ~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~ 1165 (1184)
T 1i84_S 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165 (1184)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344455555555555555555555666666667777777777777765433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.31 E-value=1.7e-06 Score=101.40 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHH
Q 004063 667 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 717 (776)
Q Consensus 667 dsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL 717 (776)
..+..-+.+++.+.+.+...|........+++...++|..+++.+..+|+-
T Consensus 1084 ~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee 1134 (1184)
T 1i84_S 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134 (1184)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444455555555555555555444443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.30 E-value=0.0021 Score=58.92 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRS 442 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~ 442 (776)
+|+.-|+.+..+.-.|...
T Consensus 10 ~l~~~~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEAD 28 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3444444443333333333
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.09 E-value=0.006 Score=55.84 Aligned_cols=110 Identities=7% Similarity=0.044 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
....|+..|+++..+.-.+...+...+.-.+.+..+-..+....+.....+..+...+.+++.++......+..+..+..
T Consensus 21 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (284)
T 1c1g_A 21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD 100 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666666666666666666666665555566666666655555555555555555555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 501 NVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
....++..+.++...+..++..++.++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (284)
T 1c1g_A 101 RAQERLATALQKLEEAEKAADESERGMKVI 130 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444444444444444444444333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.49 E-value=0.02 Score=56.99 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHH
Q 004063 427 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRL 504 (776)
Q Consensus 427 qhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErDaAq~ 504 (776)
..|+.|..++-.|...|+...+-...|.+.-.++...+......+..++.+++.++.-|+.....+.++ .-||++...
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k 97 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 344555555555544444444444444444444444444444444444444444444444444444444 458888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 554 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q 554 (776)
+...+..+...|..++..+++++-.++...-.++.+++.+..++...+++
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888766555444555555544444433333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.24 E-value=0.024 Score=73.58 Aligned_cols=152 Identities=16% Similarity=0.253 Sum_probs=102.1
Q ss_pred cccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHH
Q 004063 409 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQ 466 (776)
Q Consensus 409 ~~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa-----------------~ENsaLt~~yNq 466 (776)
+-|+|.++..==+|=. |.+..+++...+--|+.||+|=.+.+++++ .|.+++...--.
T Consensus 1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778777666643 567778888888888888888665554443 233444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 467 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR 529 (776)
Q Consensus 467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-----------------~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq 529 (776)
....+++-|..+++.+.++++|..+.+.. +.+.+.|+.++.+|.++.+...+++..||+++.+
T Consensus 1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666655555544443 4566777888888888888888888888888888
Q ss_pred HHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 004063 530 LRSNELKLERQLENSQSEISSYKKKISSLEK 560 (776)
Q Consensus 530 LRS~eLKleKElE~l~~Er~S~~~q~ssi~k 560 (776)
|+.+-=++-+|.+.++.|++.+.+++..+++
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777666666777777777777777665443
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.16 E-value=0.069 Score=53.12 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HhhhHHHH
Q 004063 434 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--LECNAADE 511 (776)
Q Consensus 434 ~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq--~E~n~A~E 511 (776)
.+-..|...+..-.+-.+.|.++-..+.+++..-...+..++.++.+++.+|..-...++..+.-.+++. .++.+...
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k 97 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3444444444444555666666666666666666666666666666666666665555555544444322 23444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063 512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 564 (776)
Q Consensus 512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 564 (776)
....+..++..||++++++.-..=.++.+++.+..++...+.++..+..+++.
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444444555555555555555555555444444
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.16 E-value=0.014 Score=75.60 Aligned_cols=152 Identities=13% Similarity=0.196 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------------HH
Q 004063 428 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-----------------LV 490 (776)
Q Consensus 428 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-----------------~~ 490 (776)
-|++|..|=-.++-.|++.++-++.+-.+-..=+...+++...|.+++.+++.-+.++++. +.
T Consensus 1935 ~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~ 2014 (3245)
T 3vkg_A 1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE 2014 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Confidence 3444544444455555555555555555555555555666666665555555544444432 24
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063 491 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570 (776)
Q Consensus 491 ~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 570 (776)
+|+.+.+|.+.|+.++.++.+..+.|..++..|+++..++....-+++.+++.....+.++.+=+..+..|+..=...++
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 56777777788888888888888888888888888877777777777777777777777888888877777777777777
Q ss_pred HHHHHHHHH
Q 004063 571 ALQEEKKMM 579 (776)
Q Consensus 571 aLQEEKklL 579 (776)
.|+++.+.|
T Consensus 2095 ~l~~~~~~L 2103 (3245)
T 3vkg_A 2095 NFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777666544
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.15 E-value=0.0033 Score=66.96 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=24.1
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 450 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
....+..++.+.+..|+....+..|+.++.+.++.++.+..+++..+.++
T Consensus 444 ~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 33334466666666666666666666666666666666655555544433
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.01 E-value=0.13 Score=50.15 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 498 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 498 (776)
++-+..||.-|+||...=-+-..+.++.++..-.|......+ -..+.+|++.+-.|+....+-.-.+..|.+.
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~-------E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQL-------ESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888887654444556666666655555444444 4444455555555555544444556777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
++.=+..+..+.++.+.|..-|..|++++-++|..+-|++-+...|.+.+...+++..+++ || |-=|+|.
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e---------id-~~~eLKa 147 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE---------ID-LNYKLKS 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HH-HHHHHHH
Confidence 7777788899999999999999999999999999999988888888877777777666552 11 1135666
Q ss_pred HHHHHHhhccCCC
Q 004063 579 MQSKLRKASGSGK 591 (776)
Q Consensus 579 LqSKLR~asa~gK 591 (776)
||.++-+=...++
T Consensus 148 lQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 148 LQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 6666665433333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.91 E-value=0.013 Score=62.47 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=29.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 004063 463 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 507 (776)
Q Consensus 463 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n 507 (776)
...+....+++++.++.+|++++..+...+..+..+.++-+....
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 334444577777788888888887777777777777777655544
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.60 E-value=0.051 Score=64.38 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
...+....+.+..+.++....+..|...||+++.++.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444455444443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.47 E-value=0.072 Score=52.61 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 483 EEIKVQLVELESFRNEYANVRLECNAADERAKILASE----VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 483 ~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaE----VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
.+|.-.......++.+|+.++.++++=.+-+|.|-+| +..+|.++..|++..-++.. |+++++.+|...
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~-------E~e~~k~K~~~~ 82 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKY-------EVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3444444455566667777788888888888877655 45566666666555555444 445555555544
Q ss_pred HHh----hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 559 EKE----RQDFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 559 ~kE----R~~l~stIdaLQEEKklLqSKLR~as 587 (776)
.++ =..|+..|..|++++..|+.+||.+.
T Consensus 83 ~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 83 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 44677788888899999999999553
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.40 E-value=0.068 Score=63.35 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
...|..++.++.+.|..|+..|++++.++...--.++...+.++ +....++..+++|-..|+..++.|.
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544333222222222232 2333555555555555555555544
No 15
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=95.68 E-value=0.6 Score=50.11 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RS-------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~-------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
.|..+...-..-++.+|..+..+......+ -. .-..++..+++++++++.+...|+..+.
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk 157 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 157 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666777777766666322 11 1344555677888888888888999999
Q ss_pred HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHH
Q 004063 498 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLER 539 (776)
Q Consensus 498 ErDaAq~E~n~A~ERaK~L-------AaEVV~LEek~lqLRS~eLKleK 539 (776)
.|..+-.+...|..+.+.. ..++..++.++.+.+..--++++
T Consensus 158 ~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~ 206 (486)
T 3haj_A 158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKE 206 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888887665553 24555555555544443333333
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.62 E-value=0.6 Score=42.72 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
.|+++-+|......++..+..+.............++.++..++..+..|.+....+..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555566666666666666666666666655543
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.61 E-value=0.37 Score=42.77 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 548 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er 548 (776)
+-|..+|.+|..|+.+ .+.....++.+...+-.+..++..+-.||..|..|+..+ +.+++.+....
T Consensus 2 ~~MdaIKkKm~~lk~e-------~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l-------E~eld~~ee~L 67 (101)
T 3u1c_A 2 GHMDAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT-------EDSRDQVLEEL 67 (101)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4578888888666554 233344444444555555555555566666665555533 66777777777
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
..+..++....+-+......+.+|+--..+|
T Consensus 68 ~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 68 HKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666777776555554
No 18
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=95.40 E-value=0.53 Score=46.85 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
.|..+...-..-++.+|..+..+.+..+.+- ..+ ..+...+++++.++..+...++..+.
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~ 164 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666665332 222 23444556666666666666777777
Q ss_pred HHHHHHHhhhHHHHH
Q 004063 498 EYANVRLECNAADER 512 (776)
Q Consensus 498 ErDaAq~E~n~A~ER 512 (776)
.|+.+-.+...|..+
T Consensus 165 ~Y~~~c~e~e~a~~~ 179 (312)
T 3abh_A 165 AHHAACKEEKLAISR 179 (312)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666665544
No 19
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=95.03 E-value=3.3 Score=41.60 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-------------------NQLKSEMEKLQEEIKVQLVELESFRNE 498 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 498 (776)
|..+...-..-++.+|..+..+.+.+..+ ...+ ..+...+++++.++..+...++..+..
T Consensus 77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~ 156 (337)
T 2x3v_A 77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKA 156 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677777777777666432 1222 334445677888888888888989988
Q ss_pred HHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 499 YANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 499 rDaAq~E~n~A~ERaK~L-------AaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
|+.+-.+...|..+.... ..++.-++.++.+++..--++..+-.........++..|.. .+...++.
T Consensus 157 Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~------~~~~~~~~ 230 (337)
T 2x3v_A 157 YHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYME------GMEQVFEQ 230 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHH
Confidence 988888877765543322 24455555554444444444443333333333333333321 24455566
Q ss_pred HH--HHH--HHHHHHHHh
Q 004063 572 LQ--EEK--KMMQSKLRK 585 (776)
Q Consensus 572 LQ--EEK--klLqSKLR~ 585 (776)
|| ||. ..+...|..
T Consensus 231 ~Q~le~~Rl~~lk~~l~~ 248 (337)
T 2x3v_A 231 CQQFEEKRLVFLKEVLLD 248 (337)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 65 222 344444554
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.91 E-value=0.71 Score=40.68 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 549 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~ 549 (776)
.|..+|..|..|+.+ .+......+.+...+-.|..++..+-.||..|..++..+ +.+++.+.....
T Consensus 3 ~md~iKkKm~~lk~e-------~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l-------E~eld~~~e~l~ 68 (101)
T 3u59_A 3 SMEAIKKKMQMLKLD-------KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT-------EDEVEKYSESVK 68 (101)
T ss_dssp THHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 467788888555554 233333344444444455555555555555555555433 555666666666
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
.+..++....+.+......+.+|+--..+
T Consensus 69 ~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 69 EAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555555544443
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.77 E-value=0.52 Score=42.84 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=7.6
Q ss_pred HhhhhHHHhhhhHHHHHH
Q 004063 533 NELKLERQLENSQSEISS 550 (776)
Q Consensus 533 ~eLKleKElE~l~~Er~S 550 (776)
..+-++.+++.|++|+.-
T Consensus 84 ~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 84 ARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 22
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=94.74 E-value=1 Score=45.78 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
.|..+...-..-++.+|..+..+.+..+.+- ..+ ..+...+++++.++..+...++..+.
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 164 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666667777777766665432 111 34555666677777777778888888
Q ss_pred HHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063 498 EYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570 (776)
Q Consensus 498 ErDaAq~E~n~A~ERaK~-------LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId 570 (776)
.|+.+-.+...|..+... .+.|+.-++.++.+++..--++.++-.....+...++..|. ..+...++
T Consensus 165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~------~~~~~~~~ 238 (350)
T 3aco_A 165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM------ENMEQVFE 238 (350)
T ss_dssp THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 888877777766654311 14666777777776666666665555444444444444443 23566667
Q ss_pred HHH
Q 004063 571 ALQ 573 (776)
Q Consensus 571 aLQ 573 (776)
.||
T Consensus 239 ~~Q 241 (350)
T 3aco_A 239 QCQ 241 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 23
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=94.56 E-value=5.5 Score=41.94 Aligned_cols=48 Identities=4% Similarity=0.073 Sum_probs=37.7
Q ss_pred ccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004063 654 LAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN 702 (776)
Q Consensus 654 ~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ 702 (776)
.|..+..|.++ .+.|...++.+..+=.++...+....+.+..|+....
T Consensus 293 ~~~~~~~~e~~-~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~ 340 (406)
T 4dyl_A 293 EPGELQLNELT-VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELR 340 (406)
T ss_dssp -TTCCCCSTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666655 7899999999999999999998888888888776654
No 24
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.46 Score=45.84 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
+...|....+.-+.....+.+|+.++.+|+.+++...-.++.+..|+.+.+++++.+.++.+.|..|=..|=+|.++-+.
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566677778888889999999999999999999999999999999999999999999999999999999886544
Q ss_pred H
Q 004063 533 N 533 (776)
Q Consensus 533 ~ 533 (776)
.
T Consensus 139 q 139 (152)
T 3a7p_A 139 K 139 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.24 E-value=0.33 Score=45.50 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 574 (776)
+-.++-+....+|-|+|-.+ +..+...|+.++.. ..+++..|++|+-++.-++..+.++-..++..++.||+
T Consensus 53 l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~-------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 53 MSAELRTDMMYLNIADDYFK-AKKMADSLSLDIEN-------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566655443 33444555544443 37777788888888888888888888888999999999
Q ss_pred HHHHHHHHHHh
Q 004063 575 EKKMMQSKLRK 585 (776)
Q Consensus 575 EKklLqSKLR~ 585 (776)
++.-|++.|..
T Consensus 125 ~~~~le~~~~~ 135 (138)
T 3hnw_A 125 NIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.15 E-value=0.37 Score=42.33 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 522 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 522 ~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as 587 (776)
.||.||.++=-.=--++-+++.|+.+-..+..+...+...|..+...++.|++|...-+.|||.+.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655333333455666677777777778888888888999999999999999999999654
No 27
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=94.07 E-value=4.8 Score=39.31 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 505 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E 505 (776)
.+.++...-..-++.+|..+..+.+.++.+ ...+ ...+..+++++.++..+...++..+..|+.+-.+
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666666666322 3333 3444555666666666666677777777776666
Q ss_pred hhHHHHHHHH
Q 004063 506 CNAADERAKI 515 (776)
Q Consensus 506 ~n~A~ERaK~ 515 (776)
...|......
T Consensus 146 ~e~a~~~~~~ 155 (301)
T 2efk_A 146 AEKAAQTAER 155 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666555443
No 28
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.44 E-value=0.61 Score=41.10 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 511 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 511 ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
++.+.|.++--.||.++..++...- .+.-.-+..++..+++++..+..|+..+...|+.|+++...+..||
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444444455555555543321 2222347788999999999999999999999999999999988875
No 29
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=93.16 E-value=4 Score=39.39 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 483 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 483 (776)
..++.+|..+..+.+..|+-...+..+..++++.+.
T Consensus 80 ~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK 115 (276)
T 2v0o_A 80 TSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHK 115 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777776555555555555554433
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.93 E-value=2.7 Score=44.16 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=40.9
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004063 410 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN 465 (776)
Q Consensus 410 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN 465 (776)
...|+++... ++..+++....+.++|..|...+.+.++.-+....+......++.
T Consensus 344 L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 344 LKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 4456665544 788888888889999999988888888777777776666655555
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.79 E-value=2.9 Score=37.00 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
.++.|-..+..++.+...--..|..|+..|+.++.+|.-.+-+ +-.+.+.+..++-..+.||++|..-++-.|
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~-------~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ-------YQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444566666666666655444433 333444555555555555555444444444
Q ss_pred HH
Q 004063 574 EE 575 (776)
Q Consensus 574 EE 575 (776)
-.
T Consensus 88 ~q 89 (96)
T 3q8t_A 88 MQ 89 (96)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.74 E-value=8.4 Score=38.15 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=20.0
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+.+.++.+.+..=-.++.+-++..=|...+|++=|.
T Consensus 119 DdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 119 DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455566666666666666666665
No 33
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=92.60 E-value=8.1 Score=37.59 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~ 515 (776)
....++..+++++.++..+...++..+..|+.+-.++..|......
T Consensus 117 ~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~ 162 (305)
T 2efl_A 117 ERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK 162 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666777777777777777777777777766665443
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.30 E-value=2.6 Score=38.08 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 549 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~ 549 (776)
..+.|+.++.+|+.++..--.++..+..++...+..+..|..+.+.+..||..|-.-+..
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe-------------------- 65 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD-------------------- 65 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 345556666666665555555555566666666666666666666666666666554441
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
.+.+-|....++|..+..-++.|+++++-
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333444456666677777777776653
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.00 E-value=1 Score=42.19 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=5.0
Q ss_pred CCccccccC
Q 004063 393 DRGDIRRLG 401 (776)
Q Consensus 393 n~v~~~~~~ 401 (776)
|+|.|.+.|
T Consensus 8 ~~V~V~I~G 16 (138)
T 3hnw_A 8 NTAEVILGG 16 (138)
T ss_dssp -CEEEEETT
T ss_pred CeeEEEECC
Confidence 556666666
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.65 E-value=1.3 Score=37.68 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 545 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 545 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
-.|+.++.++++ .+...+|+.++....++.+|..
T Consensus 40 E~ev~~L~kKiq-------~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 40 EDELVALQKKLK-------GTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666 3445666667777777777764
No 37
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=91.23 E-value=0.15 Score=56.58 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 509 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 509 A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
|.+-+..|+.+...+|+...+|+....+..++-+.|..++..+..++..+..++..=-.+-..||+|...++..+++
T Consensus 375 ~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~ 451 (575)
T 2i1j_A 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDE 451 (575)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555554455445555555555555555444444444444555555555544443
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.05 E-value=4.1 Score=36.08 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 548 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er 548 (776)
..+.+|+.++..|+.+=..-+..|..+..|++..-.++.+....++.|-.+=...-. ..=...+++-.+..|+
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~-------eyn~~~~ql~e~~dE~ 76 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR-------EYSEFKRQQLELDDEL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 345667777777777666666666666666666555555444444444333332222 2333345555677777
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
+|+..+|. ..+.-+++|+
T Consensus 77 ~Sl~~q~~-------~~~~qLdkL~ 94 (96)
T 3q8t_A 77 KSVENQMR-------YAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHhh
Confidence 77777776 3344555554
No 39
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.05 E-value=12 Score=36.20 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 572 (776)
..+..++...+..+.+|-.+.+.+..||..|-.-++.-= -+=+...+-++..++.+..-+.+.=.+....|+.|
T Consensus 61 ~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA------N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 61 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA------NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555556666665554443210 01111122222333333333333333444566666
Q ss_pred HHHHHHHHHHHH
Q 004063 573 QEEKKMMQSKLR 584 (776)
Q Consensus 573 QEEKklLqSKLR 584 (776)
|+++..|..-+-
T Consensus 135 q~ql~~LK~v~~ 146 (154)
T 2ocy_A 135 TLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 666666654433
No 40
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.46 E-value=13 Score=35.77 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
+.|.|....-..|.|+-..=...-|+++++..+-+++...+.+|..+
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i 124 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444444433
No 41
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.31 E-value=0.77 Score=42.42 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 004063 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 547 (776)
Q Consensus 477 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E 547 (776)
.+++|++||......++.|+.|...+.. .|-..|..||.++..-|...-++.-|.+.|+.|
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~----------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e 76 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVL----------QLKGHVSELEADLAEQQHLRQQAADDCEFLRAE 76 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555556667666544322 233445555555554443333333333333333
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.02 E-value=4.5 Score=37.33 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
.|++.....++.|.+-...-+.++..|.+++.+++-.. -+++=|+..++-|+.-..+=-.+|..++.+++.|++++
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 35666666667777777777777777777776632111 12334666666666666666677888999999999999
Q ss_pred HHHHHHHHh
Q 004063 577 KMMQSKLRK 585 (776)
Q Consensus 577 klLqSKLR~ 585 (776)
..||..+.+
T Consensus 100 ~~Lq~q~~~ 108 (110)
T 2v4h_A 100 EQLQREFNK 108 (110)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999887654
No 43
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.96 E-value=1.3 Score=38.97 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHH---HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 476 SEMEKLQEEIKVQLV---ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 476 ~~mE~Lq~Ei~aQ~~---~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
..-..|+.||++..+ +|..+++.--+++-++.+|..|++.|..||..|++++..||+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334456778887765 456668888888999999999999999999999999988764
No 44
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=89.82 E-value=2.2 Score=43.42 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 438 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
.|..++..-..-++.+|..+..+.+++..+- ..+ ..+...+++++..+..+...|+..+.
T Consensus 76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk 155 (320)
T 3m3w_A 76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKK 155 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666666666666554421 111 22223444555555555555665665
Q ss_pred HHHHHHHh
Q 004063 498 EYANVRLE 505 (776)
Q Consensus 498 ErDaAq~E 505 (776)
.|+.+-.+
T Consensus 156 ~Y~~~c~e 163 (320)
T 3m3w_A 156 SYHTARKD 163 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.43 E-value=4.8 Score=37.12 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 004063 468 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 547 (776)
Q Consensus 468 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E 547 (776)
...++.|+....+|+.++... ++|++-..-..+ +....-..+|-.|.+++..-=+.-..+++....+
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~-------~~~r~~Le~~w~---~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~--- 71 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKT-------MKDKQELEDFIK---QSSEDSSHQISALVLRAQASEILLEELQQGLSQA--- 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456677777776666653332 222222222223 2333456788888887775433333333333333
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004063 548 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 582 (776)
Q Consensus 548 r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK 582 (776)
.+.+..++.-|+.+|..|...|.+||.|-.-|.-|
T Consensus 72 q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 72 KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 36677888889999999999999999887665533
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.31 E-value=13 Score=39.14 Aligned_cols=12 Identities=42% Similarity=0.493 Sum_probs=5.0
Q ss_pred eEeecCCCCCCC
Q 004063 22 VRVTDLDGAGTS 33 (776)
Q Consensus 22 vr~~d~dgag~s 33 (776)
++..|..|-++.
T Consensus 36 L~~L~Ls~n~l~ 47 (487)
T 3oja_A 36 VKELDLSGNPLS 47 (487)
T ss_dssp CCEEECCSSCCC
T ss_pred ccEEEeeCCcCC
Confidence 344444444443
No 47
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.09 E-value=6.1 Score=34.73 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
.+-++++-.+.-.+-++..+-...|..|+..+..|+.+
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444
No 48
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=88.04 E-value=9.3 Score=37.56 Aligned_cols=134 Identities=14% Similarity=0.187 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063 437 FALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV------------------NQLKSEMEKLQEEIKVQLVELESFRN 497 (776)
Q Consensus 437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a 497 (776)
..|..+...-..-++.+|..+..+.+.+..+ ...+ ..+...+++++..+..+...++..+.
T Consensus 63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk 142 (290)
T 3i2w_A 63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556555666667777777776666332 1222 34445667777777888888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh----HHHHHHHHH
Q 004063 498 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQ 573 (776)
Q Consensus 498 ErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~----l~stIdaLQ 573 (776)
.|+.+-.+...|..+..........-..++.+++...-|+...++..+ ..|...+..+.+.|.+ +-..++.||
T Consensus 143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q 219 (290)
T 3i2w_A 143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCR---EKYEQAIAEITKYNSVYIEDMTSVFEKCQ 219 (290)
T ss_dssp HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888877776666544332111111112333334333333333333333 4444445555444444 334556666
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.61 E-value=16 Score=33.13 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
..++.|.+.|++++.||-.|+-.+...+..++.+-. +|-. |+. ....+..++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~-------KyE~-----------------E~~----~r~~~E~di 71 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE-------KLQE-----------------EML----QREEAENTL 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----------------HHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHH-----------------HHH----HHHHHHHHH
Confidence 357789999999999999999888888877776543 2221 110 112223445
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
...+....+|+-.--.|..+|..|.+++.=||.
T Consensus 72 ~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 72 QSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555655556688888888888876543
No 50
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.74 E-value=5.1 Score=34.83 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=13.5
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 004063 560 KERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 560 kER~~l~stIdaLQEEKklL 579 (776)
--|-+|..-|+.|++|..-|
T Consensus 63 l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 63 LARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888877554
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.44 E-value=19 Score=32.80 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
-|.+|.+|...|.+.-+.||.++..+..
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888887743
No 52
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=85.20 E-value=21 Score=32.21 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--hhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004063 428 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ--QRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 503 (776)
Q Consensus 428 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq--Q~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq 503 (776)
||+=| ++.-...+-|..++...+.+..+-..|.+++.+ +.. ...+-...|+.|++||.....+|..|+..++...
T Consensus 3 Hi~LL-RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~ 81 (107)
T 2no2_A 3 HADLL-RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA 81 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 234445556666666666666666666666655 111 1222334455566666666666666777777766
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q 004063 504 LECNAADERAKILASEVIGLEE 525 (776)
Q Consensus 504 ~E~n~A~ERaK~LAaEVV~LEe 525 (776)
++--.-..+...|.+|...|+.
T Consensus 82 ~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 82 QSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666554
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.19 E-value=20 Score=31.78 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Q 004063 448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 509 (776)
Q Consensus 448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A 509 (776)
+=++.|-.|.+...+++.+--..+.++....+++++||.+-.-.+..+..|+|.++..+..|
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555554444444445555444444333
No 54
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=85.07 E-value=45 Score=35.82 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHH
Q 004063 420 EDFAALEQHIEDL 432 (776)
Q Consensus 420 ~~faaLqqhIeDL 432 (776)
..|..|-+|+++-
T Consensus 22 ~G~~~L~~r~~~g 34 (486)
T 3haj_A 22 GNYKRTVKRIDDG 34 (486)
T ss_dssp TTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 6788888777653
No 55
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=84.91 E-value=43 Score=35.45 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004063 671 ALISELALEKEELVQALSSELAQSSKLKDLNNELSR 706 (776)
Q Consensus 671 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsR 706 (776)
..|..|+.||+++....+...-.+.++.++...+++
T Consensus 224 ~rle~L~~ere~~~e~~a~~afd~qk~qRl~q~~~~ 259 (302)
T 3ibp_A 224 SRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSR 259 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 478889999999997777776688888888888887
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.62 E-value=13 Score=31.59 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 551 (776)
Q Consensus 472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~ 551 (776)
..+|..|-.|+.+ .+......+.+...+..+..++..+-.||..|..++..+ +-+++.+...+..+
T Consensus 2 ~~ikkKm~~lk~e-------~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l-------E~eld~~ee~l~~a 67 (81)
T 1ic2_A 2 DAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT-------EDELDKYSESLKDA 67 (81)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4577777666654 344445555555566666666666667777776666654 66666777666666
Q ss_pred HHHHHhHHHhh
Q 004063 552 KKKISSLEKER 562 (776)
Q Consensus 552 ~~q~ssi~kER 562 (776)
..++....+-+
T Consensus 68 ~~kLeeaek~~ 78 (81)
T 1ic2_A 68 QEKLELADKKA 78 (81)
T ss_dssp HHHHHHHGGGC
T ss_pred HHHHHHHHHHh
Confidence 66666554443
No 57
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=84.36 E-value=3.2 Score=46.14 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 004063 473 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 552 (776)
Q Consensus 473 qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~ 552 (776)
+++.++|+-+.|+.. .|..+.+|...|+.++..+.+.+..|+.+.-.+|++...|-...-.++.+.++|..+.....
T Consensus 328 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~ 404 (575)
T 2i1j_A 328 AARERAEKKQQEYQD---RLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEA 404 (575)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445555555555443 34566678888888888888888888888888888887776666666666555555444444
Q ss_pred HHHHhHHHhhhhHHHHHHHHHH
Q 004063 553 KKISSLEKERQDFQSTIEALQE 574 (776)
Q Consensus 553 ~q~ssi~kER~~l~stIdaLQE 574 (776)
.+-..++.+.......+.+|.+
T Consensus 405 ~e~~~l~~~~~~~~~~~~~~~~ 426 (575)
T 2i1j_A 405 AERQKLEDEIRAKQEEVSRIQQ 426 (575)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 58
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=84.23 E-value=16 Score=40.90 Aligned_cols=98 Identities=17% Similarity=0.344 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 004063 474 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 553 (776)
Q Consensus 474 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~ 553 (776)
-+.++..+|.|++.=..+.+..+++|+.+..+..+..++ +.+|-+.+..+.-..+. +-+.+|+++..++..|++
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~---i~aeNeaikkrNa~aka---~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAA---LTAENTAIKKRNADAKA---DYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344555555555555556666666666666555543333 44455444444433311 223344455555544444
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 554 KISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 554 q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
++- +-+..+.+-|+|++.-+..|-
T Consensus 81 ~~A-------eY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 81 DLA-------DYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 422 333445555555554444444
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.75 E-value=19 Score=32.68 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
-...+.+|++.+..|+-||..+..-.+++..-..-+...+..+ .+.++.-+..||+++.++|.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence 3455667777777777776666555555543333333333222 22333444455555554443
No 60
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.59 E-value=35 Score=33.40 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=27.9
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 580 (776)
Q Consensus 540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq 580 (776)
.+..|..|+++.+..++.+..|+..++.-|..|.-|+..+.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34446677777777777777777777777777776666665
No 61
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.47 E-value=33 Score=33.07 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=74.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004063 457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN 533 (776)
Q Consensus 457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~---l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~ 533 (776)
|..|..-||.|.. |.+.+-+++.++..+...+.. ++.+++. +..+.+..-.|+..|.+++.+.|..
T Consensus 5 StKLI~Ain~qs~----LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-------l~~~~~~~~~e~~~L~~~l~~E~~~ 73 (154)
T 2ocy_A 5 STQLIESVDKQSH----LEEQLNKSLKTIASQKAAIENYNQLKEDYNT-------LKRELSDRDDEVKRLREDIAKENEL 73 (154)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4456666776653 455555555555544444333 3444433 3344556777777777777777777
Q ss_pred hhhhHHHhhhhHHHHHHH--------HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 534 ELKLERQLENSQSEISSY--------KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 534 eLKleKElE~l~~Er~S~--------~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
...++++..++..|++-+ .+-|....++|..+..-++.|++..+....+|.
T Consensus 74 R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 74 RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666666543 444566778888899888999887766666555
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.85 E-value=1.7 Score=39.48 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=54.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004063 462 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--FRNEYANVR-----LECNAADERAKILASEVIGLEEKALRLRSNE 534 (776)
Q Consensus 462 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--l~aErDaAq-----~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e 534 (776)
+.||.-+..|..|..+.++|+++++...+.|+. ++.+|+... .--|=|.+--+....+|..|+.+|-+||.--
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999888888877 567776632 2233344444445688888888888887544
Q ss_pred hh
Q 004063 535 LK 536 (776)
Q Consensus 535 LK 536 (776)
-+
T Consensus 92 ~~ 93 (100)
T 1go4_E 92 RA 93 (100)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.80 E-value=23 Score=32.16 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=47.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 004063 460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 539 (776)
Q Consensus 460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleK 539 (776)
|.......+..+..-|.++-.|++.|+.-..++++++.-.++....+.++..| ...++..+..++.. ++.
T Consensus 20 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~-------lE~ 89 (129)
T 3tnu_B 20 LQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAE-------LEE 89 (129)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
Confidence 33344455566666677777777776666666666665554433333333332 23444444444443 356
Q ss_pred HhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 004063 540 QLENSQSEISSYKKKISSLEKERQDFQSTI 569 (776)
Q Consensus 540 ElE~l~~Er~S~~~q~ssi~kER~~l~stI 569 (776)
++..++.++.+.-++|+.++--.-.|--+|
T Consensus 90 eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 90 ALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665554444443333
No 64
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.75 E-value=18 Score=32.92 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
-...+.+|++.+..|+-||+.+..-.+++..-..-+...+..+. +.++..+..||.++.++|.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l---~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQL---AQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34456666667767776666655554444333333333222222 2333344445555544443
No 65
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=81.72 E-value=9.1 Score=34.13 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
|+.=|.|.+ .+...||.+...|..+--++.+|+..+..|++.|+.+|+.+
T Consensus 39 Aq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 39 AQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456688888 57789999999888888888888888888888888888754
No 66
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.10 E-value=23 Score=32.79 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004063 511 ERAKILASEVIGLEEK 526 (776)
Q Consensus 511 ERaK~LAaEVV~LEek 526 (776)
|+...|.++|.--.+-
T Consensus 62 E~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 62 ETVPVLKAQADIYKAD 77 (110)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
No 67
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.06 E-value=10 Score=33.18 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
+.+|++.+.+...++-.|++.|...|-.||.++..-|..+-.++.++..+.
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777766666666666666666665555555554
No 68
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.52 E-value=41 Score=36.67 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSE 451 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~E 451 (776)
-|..-|++|+.+.+.|+|...-..-.+-
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~ 91 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTK 91 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3567788888888888777655544433
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=78.97 E-value=9.6 Score=34.56 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 004063 562 RQDFQSTIEALQEEKKMMQSKLRKASGSG 590 (776)
Q Consensus 562 R~~l~stIdaLQEEKklLqSKLR~asa~g 590 (776)
+++...++++||.|.+-|..++|.+..+|
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~~v~~lEeg~ 98 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRGLLRAMERGG 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44567899999999999999999877644
No 70
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.90 E-value=21 Score=32.50 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 004063 464 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 543 (776)
Q Consensus 464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~ 543 (776)
....+..+...|.++-.|++.|+.-..++++++.-.++....+.++..| ...++..++.++.. ++.++..
T Consensus 26 ~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~---~~~~l~~~q~~i~~-------lE~eL~~ 95 (131)
T 3tnu_A 26 VATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR---YCMQLAQIQEMIGS-------VEEQLAQ 95 (131)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHH
Confidence 3444555666666666666666555555555555444433333333222 23344444444432 3556666
Q ss_pred hHHHHHHHHHHHHhHHHhhhhHHHHH
Q 004063 544 SQSEISSYKKKISSLEKERQDFQSTI 569 (776)
Q Consensus 544 l~~Er~S~~~q~ssi~kER~~l~stI 569 (776)
++.++.+.-++|+.++--.-.|--+|
T Consensus 96 ~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 96 LRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665554444443333
No 71
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=78.71 E-value=35 Score=30.27 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 477 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK 514 (776)
=+..|...|..|...+..+..+.+.++....+|.-+-|
T Consensus 75 fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 112 (150)
T 3ajw_A 75 FIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQ 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333
No 72
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=77.94 E-value=6.9 Score=39.23 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 004063 564 DFQSTIEALQEEKKMMQSKLRK----ASGSGKS 592 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR~----asa~gKa 592 (776)
.++..++.++.+++.++..|.+ ++-.|.+
T Consensus 133 ~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V 165 (369)
T 4dk0_A 133 VVQENIKQAEIEVNTAETNLGYTKITSPIDGTV 165 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEE
Confidence 4444555566666666655543 4444544
No 73
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.17 E-value=43 Score=30.55 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=59.2
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhhHHHHHHHHHH----HHHHH-----
Q 004063 415 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE--NSSLTDSYNQQRSVVNQLKSEM----EKLQE----- 483 (776)
Q Consensus 415 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E--NsaLt~~yNqQ~~~v~qLk~~m----E~Lq~----- 483 (776)
|+.++.||..|-+-|. .-=|.+-..+..=+.++.+|.+- +..|.++.......+++|=.+. .+|..
T Consensus 5 ~~~d~~ef~~l~~~is---~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~ 81 (130)
T 2dnx_A 5 SSGQLRDFSSIIQTCS---GNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPL 81 (130)
T ss_dssp CSCCSCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCChhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4556788877665553 34455556666666677677653 5566666666655555544433 33332
Q ss_pred ---HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063 484 ---EIKVQLVELESFRNEYANVRLECNAADERAKILA 517 (776)
Q Consensus 484 ---Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA 517 (776)
+=+.|....+-|..||-++..++..+..++..-.
T Consensus 82 ~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 82 STSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123556667777777777777777666554443
No 74
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.96 E-value=9.6 Score=36.18 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063 499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 578 (776)
Q Consensus 499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl 578 (776)
+...+.-+.+|-.+.+.+..|+..|-.-+..- +-+=+...+-++..++.+..-+...-.+-...|+.||+.++.
T Consensus 55 l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE------AN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~ 128 (135)
T 2e7s_A 55 IAKENELRTKAEEEADKLNKEVEDLTASLFDE------ANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKN 128 (135)
T ss_dssp HHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH------HHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555666666666665544421 111112223333334444444444344445556666666655
Q ss_pred HHH
Q 004063 579 MQS 581 (776)
Q Consensus 579 LqS 581 (776)
|..
T Consensus 129 LK~ 131 (135)
T 2e7s_A 129 LKK 131 (135)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 75
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.12 E-value=4.8 Score=38.19 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063 474 LKSEMEKLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 550 (776)
Q Consensus 474 Lk~~mE~Lq~Ei~aQ~~~---le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S 550 (776)
|.+++-..+.+|..+... ++.++.+++.+..++ +.+-.|+..|.+++.+.|.....++++..++..|++.
T Consensus 6 LEd~L~~~r~~l~~~~~~~~~le~l~~~l~~l~~~l-------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 6 LEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKREL-------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333 233455555555444 4555666667777776666666666666666666554
Q ss_pred H--------HHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063 551 Y--------KKKISSLEKERQDFQSTIEALQEEKKMMQS 581 (776)
Q Consensus 551 ~--------~~q~ssi~kER~~l~stIdaLQEEKklLqS 581 (776)
+ .+-+....++|..+..-++.|++..+-...
T Consensus 79 LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 79 LTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344555667777777777777765544433
No 76
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=76.01 E-value=38 Score=38.20 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 004063 570 EALQEEKKMMQSKL 583 (776)
Q Consensus 570 daLQEEKklLqSKL 583 (776)
.+-||+++.++..+
T Consensus 398 ~~~~~dv~~~~a~~ 411 (551)
T 2b5u_A 398 QRAQTDVNNKQAAF 411 (551)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHH
Confidence 33445555444433
No 77
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=74.78 E-value=12 Score=32.53 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063 668 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 716 (776)
Q Consensus 668 sInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 716 (776)
-+-.-+..|..|+..|...|+++...|..|...+.+|..+|..++.|||
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666667777666999999999999999999999999999986
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.15 E-value=75 Score=33.20 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004063 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 459 (776)
Q Consensus 424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsa 459 (776)
.+...|+.+-.-+....-+|+..++-++.+-.++-+
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~ 391 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA 391 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444444444555555555555555544433
No 79
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=74.10 E-value=13 Score=37.27 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASEVIGLE 524 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LE 524 (776)
..|++.++.++..|..+.+.+.+++..++
T Consensus 114 ~~~~~~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 114 LDTLNTAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444444443333
No 80
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.75 E-value=41 Score=31.57 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063 431 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501 (776)
Q Consensus 431 DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa 501 (776)
.||+-.-.|.++-.++---.+++.+=+.+|...--+.-..|.+|+.+++.|.++++-..++++.++.+...
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 68888888888887777767777666677766555545568888888888888888888888887776553
No 81
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=73.75 E-value=8.7 Score=38.18 Aligned_cols=8 Identities=63% Similarity=0.966 Sum_probs=0.0
Q ss_pred CcccchHH
Q 004063 745 ADEGDEVV 752 (776)
Q Consensus 745 ~degdevv 752 (776)
..+||.||
T Consensus 324 L~~Gd~VV 331 (341)
T 3fpp_A 324 LEAGDEVV 331 (341)
T ss_dssp --------
T ss_pred CCCCCEEE
Confidence 45566655
No 82
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.63 E-value=53 Score=30.80 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=51.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063 498 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577 (776)
Q Consensus 498 ErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk 577 (776)
+...||..+..+..++-.--.=|+.|.+-+...++.. ++.+++|..||..+..+++ +..-.+++|.-+..
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq-------~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQ-------DASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhch
Confidence 4445555555566666666666777777666666665 4567778888888888877 33456777777777
Q ss_pred HHHHHHH
Q 004063 578 MMQSKLR 584 (776)
Q Consensus 578 lLqSKLR 584 (776)
.+..++-
T Consensus 103 ~~~~r~~ 109 (121)
T 3mq7_A 103 VLSVRIA 109 (121)
T ss_dssp HHHHHHC
T ss_pred hhhhHhh
Confidence 7777765
No 83
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=72.55 E-value=14 Score=35.89 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004063 511 ERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 511 ERaK~LAaEVV~LEek~lqLRS 532 (776)
+.++.|+.|+..|..++...|.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899888888776654
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.44 E-value=39 Score=38.25 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH---HH-HHHHHHHHHHHHHHHHHHHhhhhH
Q 004063 426 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV---VN-QLKSEMEKLQEEIKVQLVELESFR 496 (776)
Q Consensus 426 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~---v~-qLk~~mE~Lq~Ei~aQ~~~le~l~ 496 (776)
-+-|++|..+-+.|++.-.-+...+..+-++-..=..+-|+-... +. +|++.++.|+++|+.|+.-+..|+
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887776666555555544331111111122222 22 566666666666666665544443
No 85
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.02 E-value=22 Score=31.05 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063 504 LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 564 (776)
Q Consensus 504 ~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~ 564 (776)
.+|.++..|.+.+..+--.||++|..+ +.+|+..++++++.+.++..++.-=+.
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~l-------e~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAM-------ERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468889999999999999999999865 788888898888888888866443333
No 86
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.84 E-value=7.2 Score=41.91 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 004063 518 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 518 aEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 592 (776)
.|.+.|++++.++|-..-+++++.+.+..|+..+..++... +.+++.|+..+..+..+=|+
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--------------~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS--------------NMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTCSEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhCCCEEE
Confidence 46677777777777666667777777777766666665433 34555555555544444343
No 87
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=70.68 E-value=62 Score=36.28 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=17.7
Q ss_pred hHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH
Q 004063 537 LERQLENSQSEISSYKKKISSLEKERQDFQST 568 (776)
Q Consensus 537 leKElE~l~~Er~S~~~q~ssi~kER~~l~st 568 (776)
-+++|+.++.+.-.|.+++..-+.++..+.+.
T Consensus 71 Y~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~ 102 (497)
T 3iox_A 71 YQADLAKYQKDLADYPVKLKAYEDEQTSIKAA 102 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666555444444443
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.58 E-value=22 Score=31.33 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
+=|..|++-|+.+-. .+.|+ +--.+.|-.+|..|....++-.+....|..+.++|++|..+-...+.++
T Consensus 6 ElleqLE~KIq~avd-tI~lL------qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAID-TITLL------QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777776543 33332 2345667777777777777777777888888888888876655555444
No 89
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=70.52 E-value=94 Score=31.35 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=15.5
Q ss_pred ccccccchhhHHHHHhhHHHHHHHH
Q 004063 652 EGLAVNIPHDQMRMIHNINALISEL 676 (776)
Q Consensus 652 ~~~~~~Ip~DQlR~IdsInaLisEL 676 (776)
+++|..||.---..|+..+.|-.++
T Consensus 244 Ps~~~~ip~p~~ea~~~~~~l~~~~ 268 (283)
T 3pe0_A 244 PSVCFLVPPPNQEAQEAVTRLEAQH 268 (283)
T ss_dssp EGGGEECCSCCHHHHHHHHHHHHHH
T ss_pred cceEEeeCCCCHHHHHHHHHHHHHH
Confidence 6777777766556666655554444
No 90
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.12 E-value=8.6 Score=41.06 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhH
Q 004063 517 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 565 (776)
Q Consensus 517 AaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l 565 (776)
++++..|++++..++...-+++++++.+..++..+..++..-+..|..|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777766666666777777766666666665444444443
No 91
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.07 E-value=27 Score=32.21 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
-+..|..-|+.|. ..|.+-...++..+.+|- +.|++|+.+++.-+...+--+.+++.++.|.+
T Consensus 16 ~Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~--------------~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLK---AQLENMKTESQRVVLQLK--------------GHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555543 334444455555555443 33444444444444433333444555555555
Q ss_pred HH
Q 004063 501 NV 502 (776)
Q Consensus 501 aA 502 (776)
..
T Consensus 79 ~l 80 (120)
T 3i00_A 79 EL 80 (120)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 92
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=70.05 E-value=59 Score=28.82 Aligned_cols=118 Identities=8% Similarity=0.016 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHH
Q 004063 437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-RNEYANVRLECNAADERAKI 515 (776)
Q Consensus 437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-~aErDaAq~E~n~A~ERaK~ 515 (776)
|.|+.-|.-.....+..+.+--.....++.....+.+|......+.+.+..... ..+ ..++-+.+.=+..-+.....
T Consensus 8 ~~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~--~g~~~~~l~~~~~fi~~L~~~I~~ 85 (150)
T 3ajw_A 8 GALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMG--NGIASNRWINYQQFIQTLEKAIEQ 85 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CC--SGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455555555555554444443322110 111 34444555555555555556
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
...+|..++.++.+.|..-+.+.++...+.-=++....++.
T Consensus 86 q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~ 126 (150)
T 3ajw_A 86 HRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAAL 126 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776666666665554433333333333
No 93
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=69.94 E-value=71 Score=29.73 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=10.9
Q ss_pred HhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 533 NELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 533 ~eLKleKElE~l~~Er~S~~~q~s 556 (776)
.++...++-.=++.+.....++|.
T Consensus 58 ~~i~~~~~~~~yk~~y~~l~k~Y~ 81 (119)
T 3etw_A 58 QRLQAEANTRFYKSQYQELASKYE 81 (119)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHHHHHHHHH
Confidence 333333344445555444444444
No 94
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=69.71 E-value=84 Score=30.45 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=14.5
Q ss_pred hHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 004063 421 DFAALEQHIED----------LTQEKFALQRSLEAS 446 (776)
Q Consensus 421 ~faaLqqhIeD----------LT~EKfaLqR~L~~s 446 (776)
.|..|.++++. .-+||-++.+.-+++
T Consensus 15 g~~~l~~r~~~g~~~~~el~~f~~eRa~iE~eYak~ 50 (305)
T 2efl_A 15 QFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQ 50 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776643 234555555544443
No 95
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.27 E-value=95 Score=32.44 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=15.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 558 LEKERQDFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 558 i~kER~~l~stIdaLQEEKklLqSKLR~as 587 (776)
|+++-.+-++-|+.|.-|.+.|..+|+++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555556666666665543
No 96
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.86 E-value=24 Score=32.49 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHhHHHh----hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 543 NSQSEISSYKKKISSLEKE----RQDFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 543 ~l~~Er~S~~~q~ssi~kE----R~~l~stIdaLQEEKklLqSKLR~as 587 (776)
.|.-|+++++.+|....+| =..|+.+|..|+.++..++.+||.+.
T Consensus 14 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 14 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 23477888888888888888888543
No 97
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.61 E-value=1.3e+02 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004063 565 FQSTIEALQEEKKMMQSK 582 (776)
Q Consensus 565 l~stIdaLQEEKklLqSK 582 (776)
.+...++||.|...|+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555666666555554
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.07 E-value=70 Score=28.95 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 004063 498 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK 553 (776)
Q Consensus 498 ErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~ 553 (776)
+|+.++.++..+..+.+.+-.|+..|..++.+.|.....++++...+..|++-+-.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555566666666666666666666666666666665555444
No 99
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=67.91 E-value=90 Score=30.10 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
-++++.+|-|++-+++|..|--.-|-.|+- -+.-+.+.+.++.|||.---++.-++..+
T Consensus 7 E~K~~~ia~L~~D~~s~~~eleEnqeEL~i---------------------VgkML~EEqgKVDQlqKRn~~HQKEi~~L 65 (167)
T 4gkw_A 7 EDKEDEVADLKQDTESLQKQLEENQEELEI---------------------VGNMLREEQGKVDQLQKRNVAHQKEIGKL 65 (167)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhhHHHHHHhccHHHHHHHHH
Confidence 367788999999998877665444444432 13345566777777777777888889999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 004063 496 RNEYANVRLECNAADERAKILASE 519 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ERaK~LAaE 519 (776)
++|...+|.-+.+|+-..|.-..+
T Consensus 66 rae~~~~QRn~~K~~~~Lkrn~~q 89 (167)
T 4gkw_A 66 RAELGTAQRNLEKADQLLKRNSQQ 89 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhhhHH
Confidence 999999999999998877765443
No 100
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=67.66 E-value=98 Score=30.43 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q 004063 513 AKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS~eL 535 (776)
-+.|+..+...|++|..+-.+=+
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788888888888887754443
No 101
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.65 E-value=98 Score=34.26 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063 453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499 (776)
Q Consensus 453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr 499 (776)
|-..-..|...-+.....|..|+..++.+|.++......+.....++
T Consensus 105 Le~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 105 LKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 33333444444455555566666666666665554444444444333
No 102
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.55 E-value=45 Score=28.87 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
+-.|....+..|.+|.+|...|.+.-+.||.++..+
T Consensus 47 l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 47 LLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443347888888888888888888887765
No 103
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=67.03 E-value=4 Score=42.02 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=31.3
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063 538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 580 (776)
Q Consensus 538 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq 580 (776)
+..+..+..++..+..+..-|..+...+..+|.+|++|.+.|+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445666777777777777777777788888888888887664
No 104
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.59 E-value=58 Score=35.35 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALR 529 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lq 529 (776)
+.++..++++-.|+..||..++.
T Consensus 80 e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 80 EQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Confidence 45577777777777777665553
No 105
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=66.22 E-value=1e+02 Score=30.02 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 004063 420 EDFAALEQHIED----------LTQEKFALQRSLEAS 446 (776)
Q Consensus 420 ~~faaLqqhIeD----------LT~EKfaLqR~L~~s 446 (776)
+.|..|.+|+++ .-+||-++.+.-++.
T Consensus 7 ~g~~~l~~~~~~g~~~~~el~~f~keRa~iE~eYak~ 43 (301)
T 2efk_A 7 GQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQ 43 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888877653 234555555544443
No 106
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.08 E-value=34 Score=27.86 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
..+..++..++.+...|...|..|++|+..|...|.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666667777777776665553
No 107
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=65.88 E-value=20 Score=29.14 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 004063 463 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 513 (776)
Q Consensus 463 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERa 513 (776)
+.++....|.+|..++.+|+.++.+ ++.+..+|+-|+..|.+|.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~a-------l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANA-------ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 3455556666666666666665443 4445556666777777664
No 108
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.77 E-value=17 Score=32.05 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 540 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKE 540 (776)
.||+....++..+...++.+|..||.+-.+||..-..+++|
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777766664443333333
No 109
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=65.65 E-value=1.8e+02 Score=32.89 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 541 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 541 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
...++.|++.....++.+|--|-+ ++ .++|-+.+||-+
T Consensus 411 ~d~~~~~~s~~~~~ls~~me~Rkq--~e-----~k~k~ae~kl~~ 448 (551)
T 2b5u_A 411 FDAAAKEKSDADAALSSAMESRKK--KE-----DKKRSAENNLND 448 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhcccc--hh-----hhhhhhhhccch
Confidence 345667777788888888876633 22 445667888875
No 110
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=65.59 E-value=66 Score=29.05 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 004063 476 SEMEKLQEEIKVQL 489 (776)
Q Consensus 476 ~~mE~Lq~Ei~aQ~ 489 (776)
+.|+-|++++.++.
T Consensus 40 E~i~vLk~Qv~IY~ 53 (94)
T 3jsv_C 40 ETVPVLKAQADIYK 53 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555555554
No 111
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.15 E-value=81 Score=34.44 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Q 004063 420 EDFAALEQHIEDL---TQEKFALQRSLEASRALSESLAAENS--------SLTDSYNQQ-RSVVNQLKSEMEKLQEEIKV 487 (776)
Q Consensus 420 ~~faaLqqhIeDL---T~EKfaLqR~L~~s~~l~EsLa~ENs--------aLt~~yNqQ-~~~v~qLk~~mE~Lq~Ei~a 487 (776)
..+..|.+-++++ ..+=+.+.+.+-.--+=.+..+.+|+ .|-++++-. .-+-++|. .|..||..|+.
T Consensus 67 ~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~ 145 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRD 145 (390)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 3455666666665 23444444444333333333333333 333333332 22334455 66677777777
Q ss_pred HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHhHhhh
Q 004063 488 QLVELESFRNEYANVRLECNAADERAKILASEV---IGLEEKALRLRSNELK 536 (776)
Q Consensus 488 Q~~~le~l~aErDaAq~E~n~A~ERaK~LAaEV---V~LEek~lqLRS~eLK 536 (776)
|+++...|....|-.+.-|.-+=.|+-.+.-.. +.++++++++++..|-
T Consensus 146 q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a~~ll 197 (390)
T 1deq_A 146 QLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAINLL 197 (390)
T ss_pred HHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhhhccc
Confidence 777777776666777777776666554444222 2344455555554443
No 112
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=65.06 E-value=15 Score=36.63 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 430 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 430 eDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
|-||+=|-+++-.|+.+-.+++.|..||..|++.--..-..+.+|++++.-|+++
T Consensus 2 d~~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 2 DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999999877655555555555555444443
No 113
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=64.79 E-value=1e+02 Score=29.64 Aligned_cols=127 Identities=13% Similarity=0.210 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 518 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAa 518 (776)
+...|+++.+-++..-...-.|-+..-.-+..+..|.---++..+.-..+.-.+..+..-...|-..+..|--....|..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444444444333333333333333333333333334444555556666666677777777888888
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063 519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572 (776)
Q Consensus 519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL 572 (776)
++..||+++...+-.-.. +..+++.+...+..+...=.+|.-.|.+|
T Consensus 106 ~id~lEd~L~~~Kek~~~-------i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKA-------ISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 888888877765444443 44555566666666656566666666655
No 114
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.48 E-value=74 Score=30.80 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
...|..|...|+.+|.++.-.----.|.++.+++|..++.-++..+ ..-+.+||+|=
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l-------E~kl~kLq~EN 126 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL-------QQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3445555555555555442211111345566777777776666644 34455555554
No 115
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=63.79 E-value=56 Score=31.75 Aligned_cols=60 Identities=18% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-------ILASEVIGLEEKALRL 530 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK-------~LAaEVV~LEek~lqL 530 (776)
|.+|+..+..++.-|.+|....+.+..||..|.-|..+|++=.+ .-.+=+.-||+|+.++
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~a 88 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQA 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999988888877655 3445566788887765
No 116
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.22 E-value=94 Score=35.27 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhHhhhhHHH
Q 004063 522 GLEEKALRLRSNELKLERQ 540 (776)
Q Consensus 522 ~LEek~lqLRS~eLKleKE 540 (776)
.|+.-|..+|+.=.|||.+
T Consensus 135 vLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 117
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.05 E-value=1.7e+02 Score=32.50 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=10.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 460 LTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
|...|++...++..+...|.++..+|
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~ 151 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEM 151 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHH
Confidence 44444444444444333333333333
No 118
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.51 E-value=23 Score=28.80 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=13.3
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Q 004063 450 SESLAAENSSLTDSYNQQRSVVNQLKSEM 478 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m 478 (776)
+++|..+-..|+.+..+..+.|+.|+.++
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444444443
No 119
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=61.14 E-value=95 Score=28.02 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 004063 564 DFQSTIEALQEEKKMM 579 (776)
Q Consensus 564 ~l~stIdaLQEEKklL 579 (776)
.+-+.++.++.||..|
T Consensus 86 ~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 86 NWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555544
No 120
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=61.03 E-value=20 Score=35.61 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhHHHH
Q 004063 496 RNEYANVRLECNAADE 511 (776)
Q Consensus 496 ~aErDaAq~E~n~A~E 511 (776)
..+++.++.++..|..
T Consensus 113 ~~~~~~a~~~~~~~~a 128 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQA 128 (341)
T ss_dssp THHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445544444444333
No 121
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=60.34 E-value=2.2e+02 Score=32.05 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=11.8
Q ss_pred chhhHHHHHHHHHHHH
Q 004063 418 HNEDFAALEQHIEDLT 433 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT 433 (776)
...+|..|.++|.+.-
T Consensus 308 ~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 308 DGTGFPKFMDSLNTFL 323 (695)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHH
Confidence 5568889988887643
No 122
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=59.63 E-value=24 Score=30.53 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=27.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 004063 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 543 (776)
Q Consensus 500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~ 543 (776)
.||+....++..+...++..|..|+.+-.+||..-..+++|+..
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777665444444444333
No 123
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=59.15 E-value=1.1e+02 Score=28.29 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhHH
Q 004063 431 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL-ESFRNEYANVRLECNAA 509 (776)
Q Consensus 431 DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l-e~l~aErDaAq~E~n~A 509 (776)
.|+.|.-.|...+.........+..+|..|...|-........|+..+..++.+. ..+ +.-..|+.+....+.++
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~----~~l~ek~~~e~~~le~~L~e~ 101 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY----DLAKESTSWDRQRLEKELEEK 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555556666667777666665555555555544444332 111 22233333333333333
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 004063 510 DERAK----ILASEVIGLEEKALRLRSNELKLERQLENS 544 (776)
Q Consensus 510 ~ERaK----~LAaEVV~LEek~lqLRS~eLKleKElE~l 544 (776)
.+... ..-.+++.++.+-..+....+.++++++.+
T Consensus 102 ~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~A 140 (155)
T 2oto_A 102 KEALELAIDQASRDYHRATALEKELEEKKKALELAIDQA 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 111122244444444555555555555553
No 124
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.16 E-value=29 Score=31.62 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHH
Q 004063 678 LEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 717 (776)
Q Consensus 678 ~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL 717 (776)
.||..++.........+..|+....+|.++|+.++..+.-
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e 43 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQE 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998776653
No 125
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.11 E-value=11 Score=38.92 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=13.2
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 481 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 481 (776)
++|...|..|++..++...++..||+++++|
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444333
No 126
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=56.56 E-value=26 Score=28.33 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 004063 447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 481 (776)
Q Consensus 447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 481 (776)
++-+..|+.-|..|+.-..+-+.++..|+++|++|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457888889999888888888888888888776
No 127
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=56.50 E-value=1.4e+02 Score=28.57 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=6.7
Q ss_pred hhhHHHHHHHH
Q 004063 419 NEDFAALEQHI 429 (776)
Q Consensus 419 ~~~faaLqqhI 429 (776)
++.|..|.+++
T Consensus 17 ~~g~~~l~~~~ 27 (276)
T 2v0o_A 17 NSGFDVLYHNM 27 (276)
T ss_dssp CCHHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 56666666554
No 128
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=55.47 E-value=33 Score=39.71 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRA 448 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~ 448 (776)
+|.-.+.+||+++.+||..|-+.|+..+.
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~ 38 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQ 38 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667899999999999999999988875
No 129
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=55.13 E-value=1.7e+02 Score=28.98 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=10.9
Q ss_pred ccccCCchhhHHHHHHHHHH
Q 004063 412 GFYSTKHNEDFAALEQHIED 431 (776)
Q Consensus 412 ~F~s~~~~~~faaLqqhIeD 431 (776)
.|... +.|..|.+|+++
T Consensus 24 ~FW~~---~g~~~l~~r~~~ 40 (312)
T 3abh_A 24 SFWEV---GNYKRTVKRIDD 40 (312)
T ss_dssp CTTST---TTTHHHHHHHHH
T ss_pred cCCCC---CChHHHHHHHHH
Confidence 45544 378888877653
No 130
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=54.94 E-value=1.6e+02 Score=28.84 Aligned_cols=120 Identities=13% Similarity=0.210 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------H
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------E 491 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------~ 491 (776)
.+.=|.|++.|.-=+- ..|+.|++|+..++.+-+.=++++-++...+..++..++-|.+-+..+-- .
T Consensus 32 eekSa~L~eLirs~~P------eDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d 105 (186)
T 1oxz_A 32 EEKSKMLARLLKSSHP------EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSS 105 (186)
T ss_dssp TTHHHHHHHHHSCCSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTT
T ss_pred HHHHHHHHHHhcCCCh------hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccc
Confidence 3334566655532222 23688999999999887777888888888888888888777665443211 1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 004063 492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 559 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~ 559 (776)
.+.+. -.-..|..++-+...|+.|...=|+ ++ -++=.+.+++.++..+|..+.
T Consensus 106 ~Ell~----eL~~~Ck~~qp~i~~Li~e~~ddee-~L----------~elL~~ND~Ln~vl~kY~~~~ 158 (186)
T 1oxz_A 106 EDLMK----ELYQRCERMRPTLFRLASDTEDNDE-AL----------AEILQANDNLTQVINLYKQLV 158 (186)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHCCSCHH-HH----------HHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHccCCHH-HH----------HHHHHhhHHHHHHHHHHHHHh
Confidence 12221 2233466677777777666421111 11 122246677777777777553
No 131
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=54.42 E-value=1.1e+02 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=13.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 560 KERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 560 kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
.+|..++...+.|++....|+..+.+
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443
No 132
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.13 E-value=73 Score=25.06 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
|++-+....+....+-.+-+.+..+||+....++...++|..++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444344444444555556666666666666666666665544
No 133
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.94 E-value=1e+02 Score=34.18 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 004063 752 VERVLGWIM 760 (776)
Q Consensus 752 vervlgwim 760 (776)
|+|+++-|+
T Consensus 440 v~R~l~alL 448 (501)
T 1wle_A 440 VPRLLIALL 448 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 134
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=53.30 E-value=1.1e+02 Score=27.13 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
+..|-.||-.|--|+..+=...+--+|.|..-++|+.++.+++.
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33666677666666666655666556666555566555555555
No 135
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.30 E-value=61 Score=27.90 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=23.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 503 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 503 q~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
.+.+.++-.|++.|...|-.||.++-.-|+.+-.++.++..+.
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666655555555555555544444
No 136
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.91 E-value=38 Score=29.95 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=26.3
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 539 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 539 KElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
++.|++..|+.-++-+++-++.||.+-..-+.+..+|...||-.|
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445556666666666666666666666555555555555555444
No 137
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.23 E-value=1.2e+02 Score=26.26 Aligned_cols=39 Identities=10% Similarity=0.259 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 547 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 547 Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
.+..+..++..+..+-..+...+..+..+++.|..+++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556656556666666777777777777777763
No 138
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.34 E-value=73 Score=25.58 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 436 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 436 KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
+.+-+|-=++-.+-++.|..+...|+....+....|..|+.++.+|.+.+
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666677777888888887777777777888888887777653
No 139
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.06 E-value=21 Score=28.82 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=19.0
Q ss_pred HHhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 004063 692 AQSSKLKDLNNELSRKLEHQTQRLELLTAQ 721 (776)
Q Consensus 692 r~~~dLk~lN~ELsRKLE~qtQRLELltsq 721 (776)
...+.|+.+|.||..|.+.++++++-+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666655554
No 140
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=51.00 E-value=39 Score=33.86 Aligned_cols=98 Identities=9% Similarity=0.151 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 550 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S 550 (776)
+..|+.+++.|+.+++...-.+--+.+||+|++.....=.+.++..|.+-+ +..|-.=++.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~-------------------~~~LLpVlDn 121 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSL-------------------ASDLLPVLDN 121 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhHHHHH
Confidence 445666666666665555555555666777766655555555444443321 2223333455
Q ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 004063 551 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 551 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 592 (776)
+.+.+..+... ..+..|-+-.++...+|.++.....+
T Consensus 122 lerAl~~~~~~-----~~~~~l~eGvemi~k~l~~~L~k~Gv 158 (213)
T 4ani_A 122 FERALKIETDN-----EQAKSILQGMEMVYRSLVDALKKEGV 158 (213)
T ss_dssp HHHHHSCCSCC-----STHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhcccc-----ccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 55555433211 12455667777777777765544333
No 141
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.85 E-value=95 Score=24.90 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 550 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
.+..++..++.+-..|..+|..|++|...|...|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555666666666666555443
No 142
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=50.77 E-value=1e+02 Score=27.03 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a 586 (776)
.+-.||..|..+-.+|.-..- .+.--++.+.+++.-+..||.-|+.+++++|+=+..++.|++.+
T Consensus 6 gmgkevEnLi~EN~eLl~TKN-------aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKN-------ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888777743322 34444577788888888888889999999998888888887754
No 143
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=49.97 E-value=64 Score=28.33 Aligned_cols=65 Identities=25% Similarity=0.232 Sum_probs=33.5
Q ss_pred HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 449 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 527 (776)
Q Consensus 449 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~ 527 (776)
=+|.|-.||..|-..-|+.--+-+.|=..++. +..|++..+.|+.+-..-..++..-+.+||+++
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdE--------------Lt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDE--------------LTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999998888765555555444443 444444444444444433344444444555544
No 144
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=49.52 E-value=2.2e+02 Score=28.77 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=11.2
Q ss_pred ccccCCchhhHHHHHHHHHH
Q 004063 412 GFYSTKHNEDFAALEQHIED 431 (776)
Q Consensus 412 ~F~s~~~~~~faaLqqhIeD 431 (776)
.|... +.|..|.+|++.
T Consensus 24 ~FW~~---~g~~~L~~r~~~ 40 (350)
T 3aco_A 24 SFWEV---GNYKRTVKRIDD 40 (350)
T ss_dssp CTTST---TTTHHHHHHHHH
T ss_pred cCCCC---CCcHHHHHHHHH
Confidence 35554 378888877754
No 145
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.35 E-value=75 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063 523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 579 (776)
Q Consensus 523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL 579 (776)
+.+++.+.|+.-+-++++ ++-.++..++|...|.+|+++.+.|
T Consensus 29 i~EELs~vr~~ni~~esk--------------L~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQ--------------LREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666554443 3333333444555566666665553
No 146
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.10 E-value=1.3e+02 Score=26.00 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
.+-+|+-..+....+|.=---.|.+.|..|.+++.=||
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444555555555555555443
No 147
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=49.09 E-value=2.1e+02 Score=28.40 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=21.5
Q ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063 450 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 483 (776)
Q Consensus 450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 483 (776)
+..|-.+|..|+..|.......+.|+.++|++-.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888877776666666655555544433
No 148
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=49.08 E-value=1.9e+02 Score=27.80 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 442 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------ELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 442 ~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------~le~l~aErDaAq~E~n~A~ERaK 514 (776)
.|+.|++|...++.+-+.=++++=+....+..++..++-|.+-+...-- ..+.+. -.-..|..++-+..
T Consensus 33 DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~----eL~~~Ck~~qp~i~ 108 (158)
T 1naf_A 33 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK----ELYQRCERMRPTLF 108 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHH----HHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHH----HHHHHHHHHHHHHH
Confidence 4789999999999988887888888888888888888777765443210 112222 12334667777777
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
.|+.|...=|+ ++ -++=.+.+++.++..+|..+
T Consensus 109 ~Li~e~~ddee-~L----------~elL~~ND~Ln~vl~kY~~~ 141 (158)
T 1naf_A 109 RLASDTEDNDE-AL----------AEILQANDNLTQVINLYKQL 141 (158)
T ss_dssp HHHHHCCSCHH-HH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHH-HH----------HHHHHhhHHHHHHHHHHHHH
Confidence 77766421111 11 12224566667777777654
No 149
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=48.65 E-value=19 Score=25.79 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 004063 563 QDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 563 ~~l~stIdaLQEEKklLqSKLR 584 (776)
+++-++++.|||.++.|..|||
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5677889999999998888888
No 150
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.25 E-value=84 Score=26.88 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 464 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
|++|+ .+.+|-.+|++|+.+|..-...++.-. =|..-...+.+...+...+..++..+++|=..|
T Consensus 18 ykeqr-Ele~le~~Ie~LE~~i~~le~~ladp~-~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 18 YKLQR-ELEQLPQLLEDLEAKLEALQTQVADAS-FFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 456677777777766544333332100 011111233445555555666666666655443
No 151
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.24 E-value=39 Score=29.03 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 004063 566 QSTIEALQEEKKMMQSKLRKASGS 589 (776)
Q Consensus 566 ~stIdaLQEEKklLqSKLR~asa~ 589 (776)
+..|++||.+.++|..||+.+..+
T Consensus 41 q~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468999999999999999975544
No 152
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.20 E-value=1.1e+02 Score=27.37 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=57.8
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 411 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 490 (776)
Q Consensus 411 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 490 (776)
-||-+=-....-.+|++.|++|..|--.-.++-+.-..|. .+-.+|+++-|--. +...+.+....|+.|+.++.-...
T Consensus 6 ~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~-~vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMK-DVYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555667778999999999988666666655444443 45678888864433 377888888999999888765555
Q ss_pred Hhhhh
Q 004063 491 ELESF 495 (776)
Q Consensus 491 ~le~l 495 (776)
-|+.+
T Consensus 84 ~L~e~ 88 (98)
T 2ke4_A 84 WLAEA 88 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 153
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.74 E-value=1.6e+02 Score=32.49 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 563 QDFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 563 ~~l~stIdaLQEEKklLqSKLR~as 587 (776)
..+-..|.+|.++.+.++.+|....
T Consensus 126 ~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666533
No 154
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=47.32 E-value=4.4e+02 Score=31.55 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=16.8
Q ss_pred ccCCCccccccCCCccccccccccccCCchhhHHHHHHHHH
Q 004063 390 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIE 430 (776)
Q Consensus 390 ~~~n~v~~~~~~~dE~~~e~~~~F~s~~~~~~faaLqqhIe 430 (776)
+..|+.-| ++.|=.++| +-|+.==.+||+-|+
T Consensus 628 F~~N~lvi--tsVDvqsvE-------pvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 628 FPQNGLVV--SSVDVQSVE-------PVDQRTRDALQRSVQ 659 (861)
T ss_dssp CTTTCEEE--EEEEEEEEE-------ESSHHHHHHHHHHHH
T ss_pred EccCCeEE--EEEeeeeec-------ccCHHHHHHHHHHHH
Confidence 44454434 666666664 334444456666554
No 155
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=47.26 E-value=4.3 Score=37.09 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063 508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558 (776)
Q Consensus 508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi 558 (776)
|+.-|.|+++ ++..||.++..|...--++.+|...++.|++.++.+|+.+
T Consensus 49 Aq~CR~rk~~-~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 49 AASCRVKRVT-QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHH-HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788877 8999999998887776677777777777777777777655
No 156
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.26 E-value=1.2e+02 Score=32.83 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 004063 753 ERVLGWIM 760 (776)
Q Consensus 753 ervlgwim 760 (776)
+|+++-|+
T Consensus 411 ~R~i~all 418 (455)
T 2dq0_A 411 SRAIVAIL 418 (455)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 157
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=47.17 E-value=95 Score=29.88 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhHHH
Q 004063 496 RNEYANVRLECNAAD 510 (776)
Q Consensus 496 ~aErDaAq~E~n~A~ 510 (776)
..|++.++.++..|.
T Consensus 97 ~~~~~~a~~~~~~a~ 111 (277)
T 2f1m_A 97 KQEYDQALADAQQAN 111 (277)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444443
No 158
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.85 E-value=1e+02 Score=26.85 Aligned_cols=13 Identities=0% Similarity=0.250 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 004063 469 SVVNQLKSEMEKL 481 (776)
Q Consensus 469 ~~v~qLk~~mE~L 481 (776)
+.++++.-+|+++
T Consensus 41 GqiE~~~~~l~ql 53 (83)
T 2xdj_A 41 GQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 159
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.36 E-value=85 Score=25.50 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063 436 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 486 (776)
Q Consensus 436 KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 486 (776)
|.|-.|-=++-++.++.|..+...|...-......|.+|+.++.+|...+.
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666667777777776666666666667777777777666543
No 160
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.05 E-value=39 Score=27.30 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063 436 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 486 (776)
Q Consensus 436 KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 486 (776)
+.|-+|-=++-.+-++.|..+-..|+..-......|..|+.++.+|.+.+.
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 10 RIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666677777777777777766666777777777776666543
No 161
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=44.64 E-value=41 Score=34.11 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004063 458 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 496 (776)
Q Consensus 458 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~ 496 (776)
.-|+.+||+-...+..|...+++.+.|+..|.+-++..+
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~ 205 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCR 205 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999988888777654
No 162
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=43.14 E-value=1.6e+02 Score=27.50 Aligned_cols=71 Identities=8% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
|++..+++|.---.|--+-++-++-.+........+- .-|-++.++|+.|+.++.+|++.++.+..+....
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~ 95 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNL 95 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5566666666555666666665555555555554443 3467788999999999999999877766644433
No 163
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=42.79 E-value=1.6e+02 Score=25.30 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK 560 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k 560 (776)
-.+..|.+.+..+--.||+++..+ +.+|+.-++++++.+.++..++.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~l-------e~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEM-------EQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888999988865 77888888888888888775543
No 164
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=42.20 E-value=3.4e+02 Score=28.88 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 520 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 520 VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
...|..++..++-..-|++.+|+....+....++++.++.-|=.+|.++-|.
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 3445555555555555555665555555555555555544444444443333
No 165
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=42.17 E-value=2.7e+02 Score=27.74 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=11.6
Q ss_pred ccccCCchhhHHHHHHHHHH
Q 004063 412 GFYSTKHNEDFAALEQHIED 431 (776)
Q Consensus 412 ~F~s~~~~~~faaLqqhIeD 431 (776)
.|.+. +.|..|.++++.
T Consensus 15 ~FW~~---~g~~~l~~r~~~ 31 (337)
T 2x3v_A 15 SFWEV---GNYKRTVKRIDD 31 (337)
T ss_dssp CTTST---TTTHHHHHHHHH
T ss_pred CCCCC---CChHHHHHHHHH
Confidence 45554 678888877754
No 166
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=42.17 E-value=1.6e+02 Score=26.84 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
.+...|+..+..+..++..--.=|+.|.+-+..-++...|-++.++++..||..+..++.
T Consensus 25 ~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 25 RQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666777666666666666666666666666655555554
No 167
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=41.97 E-value=1.7e+02 Score=25.34 Aligned_cols=13 Identities=8% Similarity=0.373 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 004063 422 FAALEQHIEDLTQ 434 (776)
Q Consensus 422 faaLqqhIeDLT~ 434 (776)
+..++.-|+.|..
T Consensus 14 v~~I~~~i~~i~~ 26 (127)
T 1ez3_A 14 VEEIRGFIDKIAE 26 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 168
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=41.59 E-value=1.4e+02 Score=32.56 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
+.+++.+|++-.|+..+|.-+.+.
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888777777776555543
No 169
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.55 E-value=38 Score=27.33 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=25.1
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 553 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 553 ~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
..|..+..|..+|+..++.|+++.+.|.+||.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666778888888888888888888864
No 170
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=41.23 E-value=67 Score=30.95 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHh----hccCCCc
Q 004063 568 TIEALQEEKKMMQSKLRK----ASGSGKS 592 (776)
Q Consensus 568 tIdaLQEEKklLqSKLR~----asa~gKa 592 (776)
.+++++.+++.++..|.+ ++-.|.+
T Consensus 113 ~l~~a~a~l~~a~~~l~~~~I~AP~~G~V 141 (277)
T 2f1m_A 113 AVTAAKAAVETARINLAYTKVTSPISGRI 141 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTTEECCSSCEEE
T ss_pred HHHHHHHHHHHHHHHhhcCEEECCCCeEE
Confidence 344555566666666664 4444444
No 171
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.02 E-value=59 Score=34.71 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
+.++.|....+.++.+-.+..+.+..|+..|++++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555444
No 172
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.94 E-value=77 Score=35.13 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 564 DFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR~as 587 (776)
.|-..|.+|.++.+.++.+|....
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666533
No 173
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=40.11 E-value=71 Score=29.34 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 004063 541 LENSQSEISSYKKKIS 556 (776)
Q Consensus 541 lE~l~~Er~S~~~q~s 556 (776)
++.+..||+=|..|++
T Consensus 34 ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 34 VSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 174
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.79 E-value=71 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 004063 564 DFQSTIEALQEEKKM 578 (776)
Q Consensus 564 ~l~stIdaLQEEKkl 578 (776)
.|..+|..|++|...
T Consensus 40 ~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 40 ELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 175
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=39.32 E-value=66 Score=28.88 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHH-----HHHH---HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 492 LESFRNEYANVRLECNAADERAK-----ILAS---EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 492 le~l~aErDaAq~E~n~A~ERaK-----~LAa---EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
|++++.||++.-++.+...-+.. ++++ ||......+-+|=..+.|+. +.+-+||.++++++.
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK---q~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMK---DAYEEEIKHLKLGLE 85 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 46778888887777766554443 2333 33333444555544444432 235555566655555
No 176
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.01 E-value=1.9e+02 Score=24.75 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 456 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
+-..+..+|++....+..|...+.+|+.++.-...+++.|
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666788888888888888877777766555555444
No 177
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=37.97 E-value=2.6e+02 Score=26.18 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576 (776)
Q Consensus 516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK 576 (776)
|.+++.....++.+.+-... -..+-..|-.+-..+.+++..=|++-..++..++++|.+.
T Consensus 49 m~~~i~ek~~~i~~~~~~~~-yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~Iq~~~ 108 (119)
T 2avr_X 49 VYNELSQRAQRLQAEANTRF-YKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHTTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554322111 1334445555555556666666677777777777777654
No 178
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=37.95 E-value=2.6e+02 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 004063 567 STIEALQEEKKMMQSKLRKA 586 (776)
Q Consensus 567 stIdaLQEEKklLqSKLR~a 586 (776)
..|..|.+|++.+-..|+.+
T Consensus 101 ~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666666643
No 179
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=37.75 E-value=2e+02 Score=24.98 Aligned_cols=24 Identities=25% Similarity=0.312 Sum_probs=11.2
Q ss_pred HHhhhhHHHHHH-HHHHHHhHHHhh
Q 004063 539 RQLENSQSEISS-YKKKISSLEKER 562 (776)
Q Consensus 539 KElE~l~~Er~S-~~~q~ssi~kER 562 (776)
..+..++.++.. +++++..|+.+|
T Consensus 72 ~klr~Yk~dl~~~lk~~lk~l~d~~ 96 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPLQSLVDSG 96 (97)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 334445555555 555554444433
No 180
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.17 E-value=1.5e+02 Score=25.90 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063 538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574 (776)
Q Consensus 538 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE 574 (776)
+.+++.++..++.+..+-..++.|++.|+..++.++.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555666666666666553
No 181
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.99 E-value=1.2e+02 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 548 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 548 r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
......++..+..+...|...|..|+.|...|..-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555556666666666666554443
No 182
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=36.92 E-value=2.1e+02 Score=31.66 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhHHHhhhh
Q 004063 545 QSEISSYKKKISSLEKERQD 564 (776)
Q Consensus 545 ~~Er~S~~~q~ssi~kER~~ 564 (776)
+.++..++.++..++.++..
T Consensus 117 ~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 117 SDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 183
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.79 E-value=2e+02 Score=28.76 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 516 LASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 516 LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
|..++..|++++..++..-|++.-|.++++
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555554
No 184
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.61 E-value=1.8e+02 Score=24.86 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHhHHHHHHHHHHHhHHHHH
Q 004063 656 VNIPHDQMRMIHNINALISELALEKEELVQALSSEL------AQSSKLKDLNNELSRKLEHQTQRLELL 718 (776)
Q Consensus 656 ~~Ip~DQlR~IdsInaLisELa~EReravsaLa~es------r~~~dLk~lN~ELsRKLE~qtQRLELl 718 (776)
.++..-+-|.++.|-..|..|+.+...|-..|++-. ..+.++...-.++..+|+....|-|-|
T Consensus 14 ~KLSykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 14 SKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777779999999999999999999999998632 345566666666777777777776544
No 185
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=36.57 E-value=2.6e+02 Score=25.86 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=6.8
Q ss_pred HHHHhhhHHHHHHH
Q 004063 452 SLAAENSSLTDSYN 465 (776)
Q Consensus 452 sLa~ENsaLt~~yN 465 (776)
.|-.||..|...+-
T Consensus 26 ~l~~eN~~Lk~e~e 39 (155)
T 2oto_A 26 RLRHENKDLKARLE 39 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555444443
No 186
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=36.57 E-value=70 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 553 KKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 553 ~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
++++.+..|.+.+...++.|+.|+.---+|||
T Consensus 9 kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLR 40 (75)
T 3mtu_A 9 KKMQMLKLDKENALDRAEQAEADKDFYFGKLR 40 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333344444444444444333333444
No 187
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=36.54 E-value=97 Score=28.45 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004063 564 DFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR 584 (776)
.+..+++.|..|+----.|||
T Consensus 29 eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 29 QYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 188
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.20 E-value=1.7e+02 Score=26.80 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=2.7
Q ss_pred HHhhhhHHHH
Q 004063 490 VELESFRNEY 499 (776)
Q Consensus 490 ~~le~l~aEr 499 (776)
...+.|-.|+
T Consensus 82 ~qRD~LI~E~ 91 (103)
T 4h22_A 82 KQREEMLEPK 91 (103)
T ss_dssp HTTTSCC---
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 189
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.08 E-value=2.2e+02 Score=30.89 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 004063 564 DFQSTIEALQEEKKMMQSKLRKAS 587 (776)
Q Consensus 564 ~l~stIdaLQEEKklLqSKLR~as 587 (776)
.+-..|.+|.++.+.++.+|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 80 EIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666533
No 190
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=36.08 E-value=1.8e+02 Score=23.99 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNE 498 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 498 (776)
.|.++..+.+.|+.+|.++...++.+...
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666665443
No 191
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.98 E-value=2.5e+02 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004063 509 ADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 509 A~ERaK~LAaEVV~LEek~lqL 530 (776)
..++...|......|++++.+|
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L 100 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVM 100 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655
No 192
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.70 E-value=2.6e+02 Score=25.66 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 004063 472 NQLKSEMEKLQEE 484 (776)
Q Consensus 472 ~qLk~~mE~Lq~E 484 (776)
..|+...++|..|
T Consensus 6 rdL~~~~~~L~~E 18 (111)
T 2v66_B 6 RDLQADNQRLKYE 18 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 193
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=35.65 E-value=3e+02 Score=28.79 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063 457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 486 (776)
Q Consensus 457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~ 486 (776)
...|+..++..++.+.+|+.++++++.+|+
T Consensus 164 ~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 164 KELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 445555566666667777777777777766
No 194
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=35.46 E-value=3.3e+02 Score=26.70 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063 546 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 580 (776)
Q Consensus 546 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq 580 (776)
.+..++...+..+.+.|.+-..-.|+.+...+-|+
T Consensus 118 ~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~ 152 (237)
T 4avm_A 118 EIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQ 152 (237)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777888888888888777665554
No 195
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=35.43 E-value=92 Score=26.38 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=20.3
Q ss_pred HHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 553 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 553 ~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
+.+-+-+..=|+|.+....|.+|++++|++|.+
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~ 52 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHK 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 333333444456666777777777777777764
No 196
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.11 E-value=85 Score=33.73 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063 497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS 532 (776)
.|++....|..+..++.+.|..+...+++++..++.
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777776666543
No 197
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=35.04 E-value=2.6e+02 Score=25.40 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004063 506 CNAADERAKILASEVIGLEEKALRLRSNELK 536 (776)
Q Consensus 506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLK 536 (776)
....+++.+.+..+++.-|.+++..|....+
T Consensus 118 Gk~~md~iR~~~~~~~~~E~~lL~~R~~~~~ 148 (164)
T 3va9_A 118 VDRLTERIETSLSVLTRAEQALLIQRLSKHD 148 (164)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888877776654
No 198
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.73 E-value=1.3e+02 Score=32.13 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 506 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
.-+.+++-+.+..++..|+.+...+ |.+++. +-.+++. .+..+-..+-..|.+|.++.+.++.+|..
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~-sk~i~~-----~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQV-AKRVPK-----APPEEKE-------ALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSS-----SCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-----hccccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666665555533 333322 1112222 23333334555666777777777777775
Q ss_pred hcc
Q 004063 586 ASG 588 (776)
Q Consensus 586 asa 588 (776)
...
T Consensus 97 ~~~ 99 (421)
T 1ses_A 97 LLL 99 (421)
T ss_dssp HHT
T ss_pred HHH
Confidence 433
No 199
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.16 E-value=1.7e+02 Score=22.94 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=5.2
Q ss_pred HHHHHHHhhhHHHH
Q 004063 498 EYANVRLECNAADE 511 (776)
Q Consensus 498 ErDaAq~E~n~A~E 511 (776)
.++.+...++.+++
T Consensus 34 ~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 34 KINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 200
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=34.05 E-value=1.1e+02 Score=32.70 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhc
Q 004063 752 VERVLGWIMKLF 763 (776)
Q Consensus 752 vervlgwimklf 763 (776)
|+|+++-|+--+
T Consensus 389 v~R~i~allE~~ 400 (425)
T 2dq3_A 389 VGRTLAAILENY 400 (425)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 677776666544
No 201
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=33.39 E-value=1e+02 Score=26.17 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 500 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD 500 (776)
..|.+.|..|..|+.|...-...++.+..|||
T Consensus 2 ~~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERd 33 (75)
T 3mtu_A 2 ASMDAIKKKMQMLKLDKENALDRAEQAEADKD 33 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777788886555554444444444444444
No 202
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=33.39 E-value=1e+02 Score=29.01 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 004063 471 VNQLKSEMEKLQE 483 (776)
Q Consensus 471 v~qLk~~mE~Lq~ 483 (776)
...|+.+++.|..
T Consensus 11 ~~~L~~EL~~L~~ 23 (158)
T 2p4v_A 11 YEKLKQELNYLWR 23 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4567777777754
No 203
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=33.31 E-value=17 Score=32.97 Aligned_cols=15 Identities=47% Similarity=0.864 Sum_probs=12.3
Q ss_pred HHHHHhhcCCCCCCc
Q 004063 756 LGWIMKLFPGGPSRR 770 (776)
Q Consensus 756 lgwimklfpgg~s~r 770 (776)
+.+|++|||+||.|.
T Consensus 77 ~k~Ly~LFP~gPakq 91 (105)
T 3or1_C 77 LKEIYELFPSGPGKG 91 (105)
T ss_dssp HHHHHHHCTTCTTTT
T ss_pred HHHHHHHCCCCHHHH
Confidence 368999999999653
No 204
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=32.93 E-value=1.5e+02 Score=27.73 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 004063 471 VNQLKSEMEKLQE 483 (776)
Q Consensus 471 v~qLk~~mE~Lq~ 483 (776)
...|+.++++|+.
T Consensus 11 ~~~L~~El~~L~~ 23 (158)
T 1grj_A 11 AEKLREELDFLKS 23 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4567777777766
No 205
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.67 E-value=2.5e+02 Score=24.44 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=26.4
Q ss_pred hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063 532 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583 (776)
Q Consensus 532 S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL 583 (776)
...+.+..+++.++.|+..++-+++ .+.-.|+.|++.-+-++.-|
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE-------~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQ-------ENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777666666666 33445555555555555444
No 206
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.55 E-value=1.2e+02 Score=33.44 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 562 RQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 562 R~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
...+-..|.+|.++.+.++.+|.....
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888876443
No 207
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.41 E-value=5.8e+02 Score=28.67 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 558 LEKERQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 558 i~kER~~l~stIdaLQEEKklLqSKLR~ 585 (776)
++.||.+++.+.+++-+.|---|.+|.+
T Consensus 535 me~~~~~~~~e~~~~~~~~~~~~~~~~~ 562 (592)
T 1f5n_A 535 MENDRVQLLKEQERTLALKLQEQEQLLK 562 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888887777665555444444443
No 208
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.33 E-value=1.2e+02 Score=24.55 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004063 510 DERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 510 ~ERaK~LAaEVV~LEek~lqL 530 (776)
.+|...|++++..|.++-.+|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL 28 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKL 28 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444
No 209
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.15 E-value=5.1e+02 Score=28.12 Aligned_cols=10 Identities=10% Similarity=0.302 Sum_probs=4.3
Q ss_pred hhHHHHHHHH
Q 004063 420 EDFAALEQHI 429 (776)
Q Consensus 420 ~~faaLqqhI 429 (776)
.+|..||..+
T Consensus 38 ~~l~~LE~~l 47 (409)
T 1m1j_C 38 GELLEIEGLL 47 (409)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444333
No 210
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.08 E-value=2.9e+02 Score=25.07 Aligned_cols=66 Identities=12% Similarity=0.280 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLV 490 (776)
Q Consensus 425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~ 490 (776)
|++..+++|.---.|--+-++-+.-.++.......+- .-|-++..+|++|+.++.+|++.++....
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667776666666666666665555555555543 34777889999999999999987665544
No 211
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=31.72 E-value=2.4e+02 Score=23.92 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHhhHHHH
Q 004063 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE---NSSLTDSYNQQRSVVN 472 (776)
Q Consensus 420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E---NsaLt~~yNqQ~~~v~ 472 (776)
=+|..|++++.+|..-.-.|+-.|+.-+..++.|... --.-...|.+.-..-.
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~ 66 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWM 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHH
Confidence 4789999999999999999999998888888888877 3444555554443333
No 212
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.57 E-value=2.2e+02 Score=24.74 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 474 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 474 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
+.+.+++|+.-+..=.-.++-|.+||.++|+ +|.+=+..||.++...+...+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~----------KLKqRit~LE~~~~~~~~~~~ 56 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQ----------KLKQRLTKVEKFLKPLIDTEF 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcccCCCch
Confidence 5566666666666666677888888888764 445556667776666555443
No 213
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=31.53 E-value=3.3e+02 Score=25.51 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=17.3
Q ss_pred cccccCCchhhHH-HHHHHHHHHHH
Q 004063 411 HGFYSTKHNEDFA-ALEQHIEDLTQ 434 (776)
Q Consensus 411 ~~F~s~~~~~~fa-aLqqhIeDLT~ 434 (776)
.+|.-+.+....+ ..+++|+.+..
T Consensus 39 ~~y~~~~d~~~~~~~~~~~l~~~~~ 63 (258)
T 2yfa_A 39 LQYMIANGDDTAAANTLAKLDAFSK 63 (258)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 5677777777777 78888777743
No 214
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=30.66 E-value=5.2e+02 Score=27.55 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQ 482 (776)
Q Consensus 470 ~v~qLk~~mE~Lq 482 (776)
...+|..++.+|.
T Consensus 228 E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 228 EEEGLNTELSRLS 240 (517)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3344444444443
No 215
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.38 E-value=3.3e+02 Score=25.17 Aligned_cols=68 Identities=12% Similarity=0.302 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQL 489 (776)
Q Consensus 422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~ 489 (776)
-+.|++..+++|.---.|--+-+|-++-.++.......+- ..|-++.++|++|+.++.+|++.++...
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887777777777776666666666665554 3467788999999999999998765543
No 216
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=30.37 E-value=4.8e+02 Score=27.04 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004063 494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 534 (776)
Q Consensus 494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e 534 (776)
.++.+|-.++..+.+|..-+++-.+=-..+-++.-++|...
T Consensus 116 ~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~ 156 (279)
T 3qwe_A 116 EFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGS 156 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555555555555555555555555555556665555544
No 217
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=30.00 E-value=89 Score=29.09 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
.++|.+|++.++..+.++-....+++.+++..+ | .||.......++| ..+...+..|+.++
T Consensus 9 ~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GD-l-sEnaey~aak~~q----~~~e~ri~~L~~~L 69 (156)
T 2f23_A 9 KAGYERLMQQLERERERLQEATKILQELMESSD-D-YDDSGLEAAKQEK----ARIEARIDSLEDIL 69 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC-C-SCSHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhhhhHHHHHHHH----HHHHHHHHHHHHHH
Confidence 578999999999977777777777776665411 0 2665544444444 34444555555543
No 218
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.43 E-value=4.9e+02 Score=28.04 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHhhhhHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 004063 490 VELESFRNEYANVRLECNA-----ADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 490 ~~le~l~aErDaAq~E~n~-----A~ERaK~LAaEVV~LEek~lqLR 531 (776)
+.++.+..++........+ -.++++.+..|.-.|+..+..++
T Consensus 25 ~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~ 71 (365)
T 1gqe_A 25 LDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLD 71 (365)
T ss_dssp TTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444443333222 25788899999999998888774
No 219
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.33 E-value=1.9e+02 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 507 NAADERAKILASEVIGLEEKALRLR 531 (776)
Q Consensus 507 n~A~ERaK~LAaEVV~LEek~lqLR 531 (776)
..-.++...|..++..|+.+-..|+
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~ 43 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALK 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 220
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.17 E-value=85 Score=32.49 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 004063 569 IEALQEEKKMMQSKL 583 (776)
Q Consensus 569 IdaLQEEKklLqSKL 583 (776)
+++||+.++..+..|
T Consensus 219 l~~Lqk~~~~~~~~L 233 (315)
T 2ve7_A 219 LKRLQKSADLYKDRL 233 (315)
T ss_dssp TTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHc
Confidence 345555555554433
No 221
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.38 E-value=4.3e+02 Score=25.83 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063 522 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 573 (776)
Q Consensus 522 ~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ 573 (776)
.|..++..++....+++.+|+....+..-.++++.++.-|=.+|.+.-|...
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl 151 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555555566666666666666665555555555555444444444444443
No 222
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.21 E-value=74 Score=34.07 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR 584 (776)
+.-+.+++-|.+..|+..|+.+-..+ |.+++ .++..- .+...+..+-..+-..|..|.++.+.++.+|.
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~-sk~i~------~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKL-SKEIG------KLKREG----KDTTEIQNRVKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTT------GGGSSC----SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------HHhhcC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665555533 23332 211100 01122223333444555566666666666666
Q ss_pred hh
Q 004063 585 KA 586 (776)
Q Consensus 585 ~a 586 (776)
..
T Consensus 100 ~~ 101 (425)
T 2dq3_A 100 NT 101 (425)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 223
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=27.58 E-value=1.3e+02 Score=28.34 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDL-TQEKFALQRSLEASRAL 449 (776)
Q Consensus 419 ~~~faaLqqhIeDL-T~EKfaLqR~L~~s~~l 449 (776)
.+.+.+|++.++.| +.++-.+..+++.+++.
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~ 39 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASL 39 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhC
Confidence 57799999999999 66888888887776653
No 224
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.43 E-value=2.1e+02 Score=23.02 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=7.7
Q ss_pred hhhhHHHhhhhHHHHHHHHH
Q 004063 534 ELKLERQLENSQSEISSYKK 553 (776)
Q Consensus 534 eLKleKElE~l~~Er~S~~~ 553 (776)
+-.++|-+.++++|+-+++.
T Consensus 26 eqnlekiianlrdeiarlen 45 (52)
T 3he5_B 26 EQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333
No 225
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.36 E-value=2.8e+02 Score=23.40 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063 459 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 495 (776)
Q Consensus 459 aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l 495 (776)
.+..+|++....+..+...+.+|+.++.-...+++.|
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777666555555444
No 226
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.32 E-value=3.2e+02 Score=25.07 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 430 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 430 eDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
.+|-+|=+.|.+-+++. ..||--|-..-.+-+..|.+|..+|++|..|-
T Consensus 33 qELIqEYl~LE~~~s~l-------e~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRM-------EDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 35566677777776664 34444443333344778888888888888763
No 227
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.15 E-value=1.4e+02 Score=31.48 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 527 (776)
Q Consensus 471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~ 527 (776)
+..|.+++.+|+..|..+...+..|...++ ....+...|...|..|+++|
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~-------~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWR-------VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.10 E-value=40 Score=36.44 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=9.5
Q ss_pred CcccchHHHHHHHHHHhh
Q 004063 745 ADEGDEVVERVLGWIMKL 762 (776)
Q Consensus 745 ~degdevvervlgwimkl 762 (776)
.+.|+..+.|++.-++..
T Consensus 294 ~~~~~~~~~~~~~~lL~~ 311 (434)
T 4b4t_M 294 EKSGDREVQRTMLELLNQ 311 (434)
T ss_dssp GGGTTHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 345555666665544433
No 229
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=26.88 E-value=7.1e+02 Score=27.92 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=12.2
Q ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 004063 451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 481 (776)
Q Consensus 451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 481 (776)
+.|-..++++..........|.++...-++|
T Consensus 407 ~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L 437 (863)
T 1sjj_A 407 KALLKKHEAFESDLAAHQDRVEQIAAIAQEL 437 (863)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443334444443333333
No 230
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.82 E-value=1.5e+02 Score=26.96 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=25.7
Q ss_pred HHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhh
Q 004063 692 AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN 725 (776)
Q Consensus 692 r~~~dLk~lN~ELsRKLE~qtQRLELltsq~m~~ 725 (776)
.++.+|.+++++|.++++.++++|-...+..++.
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~ 65 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADLWADILME 65 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888899988888877666666544
No 231
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=26.50 E-value=74 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063 526 KALRLRSNELKLERQLENSQSEISSY 551 (776)
Q Consensus 526 k~lqLRS~eLKleKElE~l~~Er~S~ 551 (776)
+....|+.-||.+||||.++......
T Consensus 9 qEi~Aqe~iLr~ErELEeAr~~La~i 34 (50)
T 2qdq_A 9 QIIAAQEEMLRKERELEEARKKLAQI 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777788899988877554333
No 232
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.44 E-value=27 Score=29.33 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
++-|..|..+|-.+...|.+=---|..+.+-...|-.++..|.. .+.+|+.+.++|++++
T Consensus 18 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~-------e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 18 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ-------DIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34566666666554444555445556666666666666665533 3445555555554443
No 233
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.28 E-value=2.7e+02 Score=25.19 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELE 493 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le 493 (776)
.+..|+.++..|++.+..+..++.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555544443
No 234
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.11 E-value=87 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 507 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n 507 (776)
.|..|+.++.+|+.++..+......+..|.|.+..+++
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el~ 50 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999998888888888888888776654
No 235
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.82 E-value=1.9e+02 Score=24.59 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 004063 520 VIGLEEKAL 528 (776)
Q Consensus 520 VV~LEek~l 528 (776)
+..||.++.
T Consensus 31 i~~LE~~v~ 39 (70)
T 1gd2_E 31 LKALETQVV 39 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 236
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.37 E-value=47 Score=28.73 Aligned_cols=63 Identities=30% Similarity=0.334 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 004063 419 NEDFAALEQHIEDLT-QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 481 (776)
Q Consensus 419 ~~~faaLqqhIeDLT-~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L 481 (776)
++-|..|..+|=.+. .+|.+=---|.++.+-...|-.++..+....++......+|+..+++|
T Consensus 22 n~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 22 KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777666553 345555556677777777777777777666555555555555555444
No 237
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.14 E-value=3.2e+02 Score=23.33 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
..+..+...|+++-..+...++.++++.+.++.+|+.+-.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555556666666777777777777777777776543
No 238
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.84 E-value=1.1e+02 Score=27.90 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.8
Q ss_pred HHHhhHHHHH
Q 004063 664 RMIHNINALI 673 (776)
Q Consensus 664 R~IdsInaLi 673 (776)
..++.+..++
T Consensus 157 ~al~~~~~~~ 166 (171)
T 2zvf_A 157 EMLDVIFRFL 166 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455554444
No 239
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.80 E-value=1.7e+02 Score=23.43 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063 505 ECNAADERAKILASEVIGLEEKALRLRSNEL 535 (776)
Q Consensus 505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL 535 (776)
.+..|--..++|+.+|..||+++...+..-.
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455667788899999999988775543333
No 240
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.70 E-value=2.6e+02 Score=25.29 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 004063 427 QHIEDLTQEKFA 438 (776)
Q Consensus 427 qhIeDLT~EKfa 438 (776)
++|-++|.-..+
T Consensus 16 ~~iv~~TSsncs 27 (96)
T 1t3j_A 16 RGSHMFTSANCS 27 (96)
T ss_dssp ------------
T ss_pred hhhHHHHhcchH
Confidence 455555555554
No 241
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=24.68 E-value=2.4e+02 Score=26.46 Aligned_cols=103 Identities=14% Similarity=0.222 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHhhhHHHHHHH
Q 004063 442 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------ELESFRNEYANVRLECNAADERAK 514 (776)
Q Consensus 442 ~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~-------~le~l~aErDaAq~E~n~A~ERaK 514 (776)
.|+.|++|+..++.+-+.=++++=+....+..++..++-|.+-+...-- ..+.+. -.-..|..++-+..
T Consensus 24 DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~----eL~~~ck~~qp~i~ 99 (140)
T 1o3x_A 24 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK----ELYQRCERMRPTLF 99 (140)
T ss_dssp ---CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHH----HHHHHHHHHHHHHH
Confidence 4778899999999887777888888888888888888777665433211 111111 12234666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 004063 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 559 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~ 559 (776)
.|+.|...=|+ ++ -++=.+.+++.++..+|..+.
T Consensus 100 ~li~e~~ddee-~l----------~elL~~ND~ln~vl~kY~~~~ 133 (140)
T 1o3x_A 100 RLASDTEDNDE-AL----------AEILQANDNLTQVINLYKQLV 133 (140)
T ss_dssp HHHTTCTTCHH-HH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHH-HH----------HHHHHhhHHHHHHHHHHHHHh
Confidence 66655421111 11 122246677777777777553
No 242
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.20 E-value=3.7e+02 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063 554 KISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588 (776)
Q Consensus 554 q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa 588 (776)
++.-|++|-..|...|+.|+.|...|...|.+.+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 34444455556667777777777777777765443
No 243
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.13 E-value=3.9e+02 Score=24.53 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063 459 SLTDSYNQQRSVVNQLKSEMEKLQE 483 (776)
Q Consensus 459 aLt~~yNqQ~~~v~qLk~~mE~Lq~ 483 (776)
.|...|=+.-..++.+.++-.+|++
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444455555555555555
No 244
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=23.79 E-value=1.4e+02 Score=24.00 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 525 EKALRLRSNELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 525 ek~lqLRS~eLKleKElE~l~~Er~S~~~q~s 556 (776)
|-|+-|-|+.+|+-|+|.+...+|-.+..+++
T Consensus 4 etcmslasqvvkltkql~eqt~~rv~lq~qlq 35 (48)
T 2kes_A 4 ETCMSLASQVVKLTKQLKEQTVERVTLQNQLQ 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665555555554444
No 245
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.67 E-value=1.1e+02 Score=25.20 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063 681 EELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE 716 (776)
Q Consensus 681 eravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE 716 (776)
.+=...+.....++..|+..|.+|..+++.+++.|.
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666677888888899998888888877653
No 246
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=23.38 E-value=5e+02 Score=24.87 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=16.9
Q ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063 491 ELESFRNEYANVRLECNAADERAKILA 517 (776)
Q Consensus 491 ~le~l~aErDaAq~E~n~A~ERaK~LA 517 (776)
.+......|+..++++..+..+.+++.
T Consensus 145 ~i~~~ikKR~~k~lDyD~~~~~l~kl~ 171 (251)
T 2fic_A 145 DIKSRIAKRGRKLVDYDSARHHYESLQ 171 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334445667777777777776666554
No 247
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=23.16 E-value=1.6e+02 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH
Q 004063 512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQS 546 (776)
Q Consensus 512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~ 546 (776)
---.||++||.|..++.+--...+.++++|..+-+
T Consensus 5 tcmslasqvvkltkql~eqt~~rv~lq~qlq~lle 39 (48)
T 2kes_A 5 TCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLE 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999999999999888899999999888764
No 248
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=23.10 E-value=32 Score=32.31 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=30.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 464 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~y 464 (776)
..|||...-+|+.+||.|-+. ++++++|+..++.--.|.++|
T Consensus 3 r~ddf~~r~~hl~~l~d~el~-----~rar~LA~kIv~pv~el~~~h 44 (121)
T 3kp1_E 3 RADDFQQRRAHLANLSDEELQ-----TRFWEMAEKIVDPLLDLGKKN 44 (121)
T ss_dssp ---CHHHHTGGGTTCCHHHHH-----HHHHHHHHHHHHHHHHHHHHE
T ss_pred chhHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHHcC
Confidence 568999999999999999764 567777777777766666654
No 249
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=23.09 E-value=4e+02 Score=23.79 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 004063 480 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 547 (776)
Q Consensus 480 ~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E 547 (776)
+|+++|.--.+-+-+|+.|..-|+-+.|-| |+..-+-.+.+.|.+-.-+.+++.-|.+|
T Consensus 26 ~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpa---------eIA~~~~~L~qAraDL~~l~r~~av~g~E 84 (90)
T 4b6x_A 26 ALRQEIEDKQLMVNNLTDELQDAIDEANPA---------EIANTSQQLRHARADLADLQRRFAVLRNE 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555666655555555533 33333444444444444444444444433
No 250
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.06 E-value=1.2e+02 Score=23.04 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 423 AALEQHIEDLTQEKFALQRSLEASRALS 450 (776)
Q Consensus 423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~ 450 (776)
.-||.-||+|+.+|..|+-.+++-++|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4588899999999999998888877664
No 251
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=22.84 E-value=5.5e+02 Score=25.18 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---
Q 004063 428 HIEDLTQEKFALQRSLEASRALSESLA----AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA--- 500 (776)
Q Consensus 428 hIeDLT~EKfaLqR~L~~s~~l~EsLa----~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD--- 500 (776)
.||-+|+=+-+|-+-+.-.++..-.|. .|++++-+--+.|+.+|+.+|+++.+|+--... ...|..+.+|-+
T Consensus 41 lIda~teY~kal~tLiSL~~~y~a~lgkl~~~eeD~~WqvIi~~R~E~~d~k~e~~rles~w~~-a~~l~e~aAEaAy~s 119 (162)
T 1g73_A 41 LIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMT-AVGLSEMAAEAAYQT 119 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 455566655555555555555555555 889999999999999999999999888764221 111222233321
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 501 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
-|-+-+..|++|.+..+.+|.+ .|-.-+++++.|...+
T Consensus 120 GAd~asvta~~~iq~AqsqV~~-------~r~~s~~ae~~l~e~~ 157 (162)
T 1g73_A 120 GADQASITARNHIQLVKLQVEE-------VHQLSRKAETKLAEAQ 157 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 1344556666666666665543 3333445555554433
No 252
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=22.66 E-value=2.3e+02 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004063 508 AADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 508 ~A~ERaK~LAaEVV~LEek~l 528 (776)
+|.++-..+.+.+..|+.++.
T Consensus 50 aak~~q~~~e~ri~~L~~~L~ 70 (156)
T 2f23_A 50 AAKQEKARIEARIDSLEDILS 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 253
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.63 E-value=94 Score=29.98 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Q 004063 560 KERQDFQSTIEALQEEKKMMQSK 582 (776)
Q Consensus 560 kER~~l~stIdaLQEEKklLqSK 582 (776)
.-|+.+.-.+++.++-||-+...
T Consensus 115 ASRqgLrRDLeASReAKKqlEad 137 (146)
T 2xnx_M 115 ASRQSLRRDLDASREAKKQVEKD 137 (146)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666554443
No 254
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.50 E-value=1e+02 Score=33.27 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 004063 679 EKEELVQALSSEL 691 (776)
Q Consensus 679 EReravsaLa~es 691 (776)
.|--+++||+.+.
T Consensus 218 GKT~lakAiA~~~ 230 (428)
T 4b4t_K 218 GKTMLVKAVANST 230 (428)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 3556777777665
No 255
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=22.45 E-value=8.8e+02 Score=27.42 Aligned_cols=13 Identities=54% Similarity=0.626 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQ 482 (776)
Q Consensus 470 ~v~qLk~~mE~Lq 482 (776)
++.+|+.-|+++.
T Consensus 554 ~~~~L~~~l~~l~ 566 (704)
T 2xs1_A 554 VVNVLKSLLSNLD 566 (704)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544443
No 256
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=22.34 E-value=30 Score=27.58 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063 502 VRLECNAADERAKILASEVIGLEEKAL 528 (776)
Q Consensus 502 Aq~E~n~A~ERaK~LAaEVV~LEek~l 528 (776)
+|+|+.+|.||+..+..||-.|-.+..
T Consensus 4 lQrELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 4 LQRELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp SSSHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999888887766553
No 257
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.30 E-value=5.4e+02 Score=24.87 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 004063 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 592 (776)
Q Consensus 549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa 592 (776)
....+.+......+..+...+.+|+++++.|...+.+.....+.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQI 112 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQI 112 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344444444455566667777777777777777765444333
No 258
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=22.25 E-value=9e+02 Score=27.46 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004063 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 488 (776)
Q Consensus 425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ 488 (776)
|+.-|.+|-+|--.=..-+.-..++.+-++.+-+.+..-.|.|...-...+.+++.|+.-+++.
T Consensus 95 ~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~ 158 (526)
T 3iyk_A 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSY 158 (526)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4444555554443333344444555566666666666655655555555555666666544443
No 259
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.23 E-value=1.4e+02 Score=22.30 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQL 489 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~ 489 (776)
.+.+||.++.-|..||.+-.
T Consensus 3 eiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555554433
No 260
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=22.15 E-value=6.4e+02 Score=25.68 Aligned_cols=63 Identities=24% Similarity=0.387 Sum_probs=34.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSE-------SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 483 (776)
Q Consensus 418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~E-------sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~ 483 (776)
..|+|..|-..+..|... |...+..-+..++ .|+.-...+.....+|...+.++...|+++-.
T Consensus 32 ~~DEig~l~~~~n~~~~~---l~~~i~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~~el~~ 101 (341)
T 3zx6_A 32 RADEIGILAKSIERLRRS---LMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTA 101 (341)
T ss_dssp CSSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999888887654 3333333333333 34444444445555555555555555544444
No 261
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=21.80 E-value=8.9e+02 Score=27.24 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-H-HHhHHHHHHHHHHHhHHHHHHHHH
Q 004063 672 LISELALEKEELVQALSSELAQSSKL-K-DLNNELSRKLEHQTQRLELLTAQN 722 (776)
Q Consensus 672 LisELa~EReravsaLa~esr~~~dL-k-~lN~ELsRKLE~qtQRLELltsq~ 722 (776)
|--.|.+.|......++...+.|-+- + +.+.-|....+..++-|+.++.|.
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 653 (695)
T 2j69_A 601 LVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQK 653 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444321 1 222333333344444444444443
No 262
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.78 E-value=3.3e+02 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063 470 VVNQLKSEMEKLQEEIKVQLVELESFRNE 498 (776)
Q Consensus 470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE 498 (776)
.|.++..+.+.|+.+|.++...++.+...
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~~~~~ 65 (119)
T 3uun_A 37 VVKDQFHTHEGYMMDLTAHQGRVGNILQL 65 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44455555556666666666666555443
No 263
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.73 E-value=4.1e+02 Score=24.67 Aligned_cols=20 Identities=0% Similarity=-0.029 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004063 513 AKILASEVIGLEEKALRLRS 532 (776)
Q Consensus 513 aK~LAaEVV~LEek~lqLRS 532 (776)
...|......+..+...++.
T Consensus 128 ~~~L~~kf~~~m~~yq~~q~ 147 (180)
T 1s94_A 128 YSTISRKFVEVMSDYNTTQI 147 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555556555555433
No 264
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.54 E-value=4.1e+02 Score=23.22 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063 469 SVVNQLKSEMEKLQ-EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530 (776)
Q Consensus 469 ~~v~qLk~~mE~Lq-~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL 530 (776)
+.+.++.+++.+.. +.+....+++++++-=.+-....-++-.+=...|+.|...|+..|.-+
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665433 333344455555543222222223333333344555555555554433
No 265
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=21.53 E-value=5e+02 Score=24.26 Aligned_cols=28 Identities=11% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 004063 452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 482 (776)
Q Consensus 452 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq 482 (776)
.+..++...++.|.++- .+++..|+++.
T Consensus 33 ~~~~~~~~~m~ef~~~v---e~i~~~i~~i~ 60 (279)
T 3c98_B 33 TVTVDRDRFMDEFFEQV---EEIRGFIDKIA 60 (279)
T ss_dssp ------CCTTHHHHHHH---HHHHHHHHHHH
T ss_pred hhhcchHhHHHHHHHHH---HHHHHHHHHHH
Confidence 34445556666666553 33444444333
No 266
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=21.52 E-value=6.5e+02 Score=25.59 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHH
Q 004063 686 ALSSELAQSSKLKDLNNELSRKLEH 710 (776)
Q Consensus 686 aLa~esr~~~dLk~lN~ELsRKLE~ 710 (776)
.+......+...-..+.....++..
T Consensus 259 ~i~~~i~~i~~~~~~~~~~~~~~~~ 283 (341)
T 3zx6_A 259 QVGLAVAEMDRVTQQNAALVEESAA 283 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333333
No 267
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=21.48 E-value=1.4e+02 Score=31.07 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHh-HhhhhHHHhhhhHHHHHHHHHHHH
Q 004063 515 ILASEVIGLEEKALRLRS-NELKLERQLENSQSEISSYKKKIS 556 (776)
Q Consensus 515 ~LAaEVV~LEek~lqLRS-~eLKleKElE~l~~Er~S~~~q~s 556 (776)
.|..++..+-.++.-.+. -.-++.+.++.++..+.-|..+|.
T Consensus 111 ~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~ 153 (307)
T 2l7b_A 111 RLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLR 153 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777766543 123556777778877777777764
No 268
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=21.43 E-value=6.2e+02 Score=25.26 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---
Q 004063 428 HIEDLTQEKFALQRSLEASRALSESLA----AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA--- 500 (776)
Q Consensus 428 hIeDLT~EKfaLqR~L~~s~~l~EsLa----~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD--- 500 (776)
.||-+|+=+-+|-+-+.-.+...-.|. .|++++-+--+.|+..|+.+|.++.+|+--... ...|..+.+|-+
T Consensus 41 lIda~teY~kal~tLiSL~k~y~a~lgkln~~eeD~vWqvIi~~R~E~~~kk~e~~rlEs~w~~-a~~L~e~aAEaAy~s 119 (184)
T 1few_A 41 LIEAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMT-AVGLSEMAAEAAYQT 119 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 466666666666555555555555565 889999999999999999999999888764221 112222233321
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063 501 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~ 545 (776)
-|-+-+..|++|.+..+.+|.+ .|-.-.++++.|...+
T Consensus 120 GAd~asvta~~~iq~aqsqV~~-------~r~~s~~ae~~Lae~q 157 (184)
T 1few_A 120 GADQASITARNHIQLVKLQVEE-------VHQLSRKAETKLAEAQ 157 (184)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 2344566777777766666643 3444455566655544
No 269
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.36 E-value=2.1e+02 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=9.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 004063 501 NVRLECNAADERAKILASEVIGLE 524 (776)
Q Consensus 501 aAq~E~n~A~ERaK~LAaEVV~LE 524 (776)
+|+.....-.++...|..+|..|+
T Consensus 20 AArrsR~RK~~~~~~Le~~v~~L~ 43 (63)
T 2dgc_A 20 AARRSRARKLQRMKQLEDKVEELL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444433
No 270
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.23 E-value=3.8e+02 Score=25.67 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHh--hcCCCC
Q 004063 749 DEVVERVLGWIMK--LFPGGP 767 (776)
Q Consensus 749 devvervlgwimk--lfpgg~ 767 (776)
++...++..|+.+ +.|.||
T Consensus 149 ~~~~~~l~~~~~~~~l~~~~~ 169 (278)
T 1r8e_A 149 NASYSKLKKFIESADGFTNNS 169 (278)
T ss_dssp GGGGHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHcCCcccCc
Confidence 5778899999988 566554
No 271
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.05 E-value=5.4e+02 Score=26.55 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 004063 512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 547 (776)
Q Consensus 512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E 547 (776)
|=.-.+.|+.++..||.+|..++-++.+.|.++..+
T Consensus 171 RK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqd 206 (242)
T 3uux_B 171 QKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQN 206 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444556778888888887777776666666655533
No 272
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.56 E-value=3.7e+02 Score=22.92 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571 (776)
Q Consensus 516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda 571 (776)
|+.|+..+...+..+ +.++..++.++...-++|+.++.-.-.|..+|.+
T Consensus 3 l~~e~~~~~~~i~~l-------E~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 3 SARERDTSRRLLAEK-------EREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 273
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=20.36 E-value=3.4e+02 Score=21.82 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA-----AENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484 (776)
Q Consensus 421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa-----~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E 484 (776)
++..|++...++..-.-.|+..|.+-+..+..|. ....+....||+-...+.++...++.+.++
T Consensus 10 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTD 78 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888888888884 345556666665555555555555444443
No 274
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.35 E-value=6.4e+02 Score=24.99 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=39.2
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004063 412 GFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485 (776)
Q Consensus 412 ~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei 485 (776)
.+.-....+++.++.+.++=+-.- ....++-+..|..||..|.+.||+-..++.++-..-++++.++
T Consensus 110 si~L~~~~d~~e~i~elfd~~~~~-------~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 110 SFNLEKVENPAEVIRELIAYALDT-------IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp EEECEECSCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444344444444444432211 2344444566777788888888877777777777777776654
No 275
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.19 E-value=1.2e+03 Score=28.05 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 004063 562 RQDFQSTIEALQEEKKMMQSKLRK 585 (776)
Q Consensus 562 R~~l~stIdaLQEEKklLqSKLR~ 585 (776)
|.....+|.+-++--..=-.|+++
T Consensus 774 ~~~~ele~~k~~~la~ie~~kf~~ 797 (861)
T 2zuo_A 774 RAQLELEVSKAQQLANVEAKKFKE 797 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444444444443334455554
No 276
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=20.04 E-value=1.6e+02 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHH
Q 004063 678 LEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRL 715 (776)
Q Consensus 678 ~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRL 715 (776)
.|+.+++..|......++.+..+....-.+|+.++|-|
T Consensus 376 ~EQ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sL 413 (464)
T 2y7c_A 376 KEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSI 413 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999888888888888887777777777777654
No 277
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=20.02 E-value=3.9e+02 Score=22.41 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 004063 467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 518 (776)
Q Consensus 467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAa 518 (776)
-...|..||.-=...-.||..|-.-|..+-..+|.+...+..|..|.+.+..
T Consensus 24 L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 24 VSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667788888888999999999999999999998887754
Done!