Query 004064
Match_columns 776
No_of_seqs 418 out of 2664
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 3.8E-33 1.3E-37 306.7 10.5 329 196-722 3-334 (355)
2 3ukn_A Novel protein similar t 100.0 7.9E-30 2.7E-34 259.1 19.2 184 521-722 1-185 (212)
3 2ptm_A Hyperpolarization-activ 100.0 9.1E-29 3.1E-33 248.6 24.3 184 526-735 2-187 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 1.5E-28 5.3E-33 247.8 24.3 178 525-722 2-180 (202)
5 1orq_C Potassium channel; volt 99.9 1.5E-21 5E-26 200.2 18.5 211 205-526 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.8 2E-19 6.9E-24 205.7 16.3 293 197-595 174-490 (514)
7 4f8a_A Potassium voltage-gated 99.8 1.1E-17 3.6E-22 160.8 16.8 139 574-735 5-144 (160)
8 3ocp_A PRKG1 protein; serine/t 99.7 5E-16 1.7E-20 145.9 13.9 124 580-722 7-131 (139)
9 3mdp_A Cyclic nucleotide-bindi 99.6 3.4E-14 1.2E-18 133.2 16.3 108 596-722 7-122 (142)
10 3idb_B CAMP-dependent protein 99.6 3.7E-14 1.3E-18 136.7 15.8 119 588-725 30-153 (161)
11 3pna_A CAMP-dependent protein 99.6 3E-14 1E-18 136.4 14.6 108 596-722 39-146 (154)
12 3gyd_A CNMP-BD protein, cyclic 99.6 8.5E-14 2.9E-18 138.1 18.0 135 575-734 14-158 (187)
13 2pqq_A Putative transcriptiona 99.5 6.7E-14 2.3E-18 132.1 15.8 115 596-735 6-125 (149)
14 4ev0_A Transcription regulator 99.5 1.7E-13 5.9E-18 138.2 18.3 110 597-725 1-115 (216)
15 1vp6_A CNBD, cyclic-nucleotide 99.5 1.1E-13 3.8E-18 129.2 14.8 106 596-722 12-117 (138)
16 3dn7_A Cyclic nucleotide bindi 99.5 1.2E-13 4.3E-18 137.0 15.9 109 596-723 8-122 (194)
17 3shr_A CGMP-dependent protein 99.5 8.6E-14 3E-18 148.1 15.7 130 575-723 18-148 (299)
18 2d93_A RAP guanine nucleotide 99.5 1.2E-14 4.1E-19 135.7 7.4 123 582-723 2-127 (134)
19 2a9h_A Voltage-gated potassium 99.5 2E-14 6.8E-19 137.8 8.9 64 470-533 83-146 (155)
20 2z69_A DNR protein; beta barre 99.5 1.4E-13 4.7E-18 130.9 13.5 109 596-722 13-126 (154)
21 1wgp_A Probable cyclic nucleot 99.5 5.5E-14 1.9E-18 131.3 10.0 117 596-725 7-132 (137)
22 3e97_A Transcriptional regulat 99.5 2.5E-13 8.5E-18 138.7 14.4 111 596-725 7-122 (231)
23 3fx3_A Cyclic nucleotide-bindi 99.5 2E-13 6.9E-18 140.0 13.7 109 596-723 12-125 (237)
24 3vou_A ION transport 2 domain 99.5 4.2E-13 1.4E-17 128.2 14.9 87 471-557 52-148 (148)
25 3dv8_A Transcriptional regulat 99.5 5.3E-13 1.8E-17 135.0 16.0 111 596-725 4-121 (220)
26 3iwz_A CAP-like, catabolite ac 99.5 7.9E-13 2.7E-17 134.7 16.9 114 596-727 12-135 (230)
27 3d0s_A Transcriptional regulat 99.5 2.6E-13 9E-18 138.2 12.4 111 596-725 7-122 (227)
28 2gau_A Transcriptional regulat 99.4 1E-12 3.4E-17 134.3 16.3 110 597-725 12-126 (232)
29 3dkw_A DNR protein; CRP-FNR, H 99.4 3.4E-13 1.1E-17 137.1 11.1 112 596-725 10-126 (227)
30 3of1_A CAMP-dependent protein 99.4 8.6E-13 2.9E-17 135.6 14.1 111 596-725 126-237 (246)
31 1zyb_A Transcription regulator 99.4 2.1E-12 7.2E-17 132.3 16.7 110 596-723 19-135 (232)
32 3ryp_A Catabolite gene activat 99.4 2.5E-12 8.4E-17 129.0 15.6 106 601-724 2-112 (210)
33 4h33_A LMO2059 protein; bilaye 99.4 1.5E-13 5.1E-18 129.3 6.0 93 471-563 43-135 (137)
34 3of1_A CAMP-dependent protein 99.4 8.6E-13 2.9E-17 135.6 12.0 109 596-723 8-116 (246)
35 4ava_A Lysine acetyltransferas 99.4 1.8E-12 6.3E-17 140.1 15.0 108 596-723 14-125 (333)
36 2qcs_B CAMP-dependent protein 99.4 3.6E-12 1.2E-16 134.8 16.2 113 593-724 36-149 (291)
37 2oz6_A Virulence factor regula 99.4 4.9E-12 1.7E-16 126.5 16.2 104 606-724 1-109 (207)
38 2ih3_C Voltage-gated potassium 99.4 2E-12 6.9E-17 119.1 10.8 59 471-529 61-119 (122)
39 2qcs_B CAMP-dependent protein 99.4 7.9E-12 2.7E-16 132.1 16.2 114 596-728 158-277 (291)
40 3shr_A CGMP-dependent protein 99.3 8.2E-12 2.8E-16 132.8 15.7 110 596-724 158-273 (299)
41 3tnp_B CAMP-dependent protein 99.3 1.1E-11 3.7E-16 138.7 16.1 116 591-725 140-260 (416)
42 3kcc_A Catabolite gene activat 99.3 1.1E-11 3.9E-16 129.3 15.3 103 604-724 55-162 (260)
43 1o5l_A Transcriptional regulat 99.3 3.8E-12 1.3E-16 128.6 11.2 106 600-723 4-114 (213)
44 2fmy_A COOA, carbon monoxide o 99.3 6.1E-12 2.1E-16 127.4 12.5 104 596-725 5-112 (220)
45 1o7f_A CAMP-dependent RAP1 gua 99.3 1.5E-11 5.3E-16 139.2 16.4 126 581-726 27-160 (469)
46 4din_B CAMP-dependent protein 99.3 5.2E-12 1.8E-16 139.6 11.9 113 592-723 126-239 (381)
47 1ft9_A Carbon monoxide oxidati 99.3 7.1E-12 2.4E-16 127.2 10.9 104 596-725 1-108 (222)
48 1o7f_A CAMP-dependent RAP1 gua 99.3 3.9E-11 1.3E-15 135.9 16.3 111 596-725 338-451 (469)
49 3eff_K Voltage-gated potassium 99.3 1.8E-11 6.3E-16 115.5 11.0 89 471-560 40-129 (139)
50 3tnp_B CAMP-dependent protein 99.3 3E-11 1E-15 135.0 14.5 113 596-727 268-391 (416)
51 4din_B CAMP-dependent protein 99.3 9.5E-12 3.2E-16 137.5 10.2 113 596-727 249-367 (381)
52 3e6c_C CPRK, cyclic nucleotide 99.2 3.3E-11 1.1E-15 124.6 11.0 108 596-725 10-122 (250)
53 3cf6_E RAP guanine nucleotide 99.2 8.9E-11 3E-15 139.0 14.4 132 575-725 12-146 (694)
54 4f7z_A RAP guanine nucleotide 99.2 1.4E-10 4.8E-15 143.7 16.0 111 595-725 42-159 (999)
55 3la7_A Global nitrogen regulat 99.2 1.8E-10 6.1E-15 118.8 14.1 101 608-725 30-138 (243)
56 3rvy_A ION transport protein; 99.1 2E-10 6.7E-15 121.7 12.6 61 469-529 178-244 (285)
57 2bgc_A PRFA; bacterial infecti 99.1 5.3E-10 1.8E-14 114.7 15.4 102 605-725 3-113 (238)
58 4f7z_A RAP guanine nucleotide 99.1 3.7E-10 1.3E-14 139.9 16.8 128 576-722 318-448 (999)
59 2q67_A Potassium channel prote 99.1 7.7E-10 2.6E-14 100.4 11.4 61 471-531 49-109 (114)
60 2k1e_A Water soluble analogue 99.0 6.4E-11 2.2E-15 105.7 3.4 59 471-529 40-98 (103)
61 3ouf_A Potassium channel prote 99.0 2.6E-09 8.8E-14 94.1 11.0 56 472-527 33-88 (97)
62 3ldc_A Calcium-gated potassium 98.9 5.4E-09 1.8E-13 89.0 9.9 54 471-524 28-81 (82)
63 3b02_A Transcriptional regulat 98.9 6E-09 2.1E-13 103.3 9.7 76 621-716 2-82 (195)
64 3pjs_K KCSA, voltage-gated pot 98.8 7.6E-10 2.6E-14 107.5 -0.3 63 471-533 67-129 (166)
65 2zcw_A TTHA1359, transcription 98.8 1.4E-08 4.7E-13 101.2 8.8 81 615-716 2-89 (202)
66 1xl4_A Inward rectifier potass 98.7 5.5E-08 1.9E-12 103.2 9.8 55 471-525 82-136 (301)
67 1p7b_A Integral membrane chann 98.6 3.9E-08 1.3E-12 105.4 5.6 57 471-527 96-152 (333)
68 3um7_A Potassium channel subfa 98.5 2E-07 6.8E-12 98.6 9.6 57 471-527 115-171 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 4E-07 1.4E-11 97.3 10.2 57 471-527 78-134 (321)
70 4gx0_A TRKA domain protein; me 98.3 1.4E-06 4.9E-11 100.9 10.6 54 471-524 51-105 (565)
71 3sya_A G protein-activated inw 98.3 1.6E-06 5.6E-11 92.7 10.1 57 471-527 91-149 (340)
72 4dxw_A Navrh, ION transport pr 98.2 3.5E-06 1.2E-10 85.9 10.7 75 205-309 13-88 (229)
73 3spc_A Inward-rectifier K+ cha 98.2 4.9E-06 1.7E-10 89.1 11.4 56 471-526 94-151 (343)
74 3um7_A Potassium channel subfa 98.2 5.9E-07 2E-11 95.0 3.6 61 471-531 224-290 (309)
75 3ukm_A Potassium channel subfa 98.2 2.8E-06 9.5E-11 88.5 7.9 56 471-526 93-148 (280)
76 3ukm_A Potassium channel subfa 98.1 2.6E-06 9E-11 88.7 5.7 56 472-527 202-264 (280)
77 1lnq_A MTHK channels, potassiu 97.9 9.9E-07 3.4E-11 95.3 -2.0 57 472-528 46-102 (336)
78 2kyh_A KVAP, voltage-gated pot 97.7 4.5E-05 1.6E-09 72.0 7.4 78 205-312 22-99 (147)
79 1ors_C Potassium channel; volt 97.5 0.00011 3.6E-09 68.3 5.5 79 204-312 6-84 (132)
80 2kxw_B Sodium channel protein 62.9 6 0.00021 25.5 2.8 19 743-761 5-23 (27)
81 3lwc_A Uncharacterized protein 61.8 19 0.00064 31.8 7.1 46 619-666 43-88 (119)
82 2l53_B CAM, voltage-gated sodi 61.6 7.7 0.00026 25.9 3.2 20 743-762 5-24 (31)
83 3fjs_A Uncharacterized protein 57.9 48 0.0016 28.6 9.0 48 618-666 38-85 (114)
84 1o5u_A Novel thermotoga mariti 57.6 26 0.0009 29.9 7.0 47 618-666 33-79 (101)
85 3h8u_A Uncharacterized conserv 57.3 14 0.00049 32.2 5.5 49 618-666 41-90 (125)
86 3rns_A Cupin 2 conserved barre 55.5 44 0.0015 32.9 9.3 68 618-710 39-106 (227)
87 2fqp_A Hypothetical protein BP 54.0 10 0.00034 31.9 3.7 49 619-667 21-71 (97)
88 2pfw_A Cupin 2, conserved barr 52.0 68 0.0023 27.1 9.0 48 618-666 36-83 (116)
89 3bcw_A Uncharacterized protein 51.7 15 0.00052 32.7 4.7 45 621-666 54-98 (123)
90 1yhf_A Hypothetical protein SP 49.5 87 0.003 26.4 9.3 48 618-666 42-89 (115)
91 3es1_A Cupin 2, conserved barr 49.2 17 0.00059 34.5 4.9 48 618-665 81-128 (172)
92 2ozj_A Cupin 2, conserved barr 47.4 33 0.0011 29.3 6.1 46 620-666 42-87 (114)
93 3kg2_A Glutamate receptor 2; I 46.7 22 0.00074 42.1 6.3 55 471-526 563-617 (823)
94 3es4_A Uncharacterized protein 44.6 14 0.00048 32.7 3.2 45 622-667 48-92 (116)
95 2gu9_A Tetracenomycin polyketi 42.4 49 0.0017 27.7 6.4 48 618-666 23-73 (113)
96 1v70_A Probable antibiotics sy 40.1 59 0.002 26.6 6.5 48 618-666 30-78 (105)
97 2q30_A Uncharacterized protein 39.5 47 0.0016 27.7 5.8 48 619-666 36-85 (110)
98 4e2g_A Cupin 2 conserved barre 39.5 52 0.0018 28.5 6.2 48 618-666 43-90 (126)
99 4b29_A Dimethylsulfoniopropion 39.4 40 0.0014 33.2 5.8 45 622-666 138-182 (217)
100 2b8m_A Hypothetical protein MJ 36.7 36 0.0012 29.2 4.6 47 620-666 31-77 (117)
101 3of6_D PRE T-cell antigen rece 35.8 12 0.0004 32.2 1.1 39 35-76 75-115 (130)
102 2pyt_A Ethanolamine utilizatio 34.3 43 0.0015 30.1 4.8 44 620-666 61-104 (133)
103 2bnm_A Epoxidase; oxidoreducta 34.1 43 0.0015 31.8 5.1 47 620-666 121-173 (198)
104 2f4p_A Hypothetical protein TM 34.0 61 0.0021 29.3 6.0 49 618-666 50-98 (147)
105 3bu7_A Gentisate 1,2-dioxygena 33.9 31 0.0011 37.3 4.4 49 619-667 126-174 (394)
106 1dgw_A Canavalin; duplicated s 31.9 45 0.0016 31.5 4.8 50 618-667 43-95 (178)
107 3ibm_A Cupin 2, conserved barr 31.4 78 0.0027 29.4 6.3 48 618-666 58-105 (167)
108 3rns_A Cupin 2 conserved barre 30.4 1.5E+02 0.0051 28.9 8.6 48 618-666 155-202 (227)
109 2i45_A Hypothetical protein; n 29.4 26 0.00087 29.7 2.3 44 623-666 35-78 (107)
110 4axo_A EUTQ, ethanolamine util 29.2 51 0.0018 30.5 4.5 31 635-666 83-113 (151)
111 3lag_A Uncharacterized protein 27.6 15 0.00052 31.1 0.5 49 618-666 19-70 (98)
112 3jzv_A Uncharacterized protein 27.6 64 0.0022 30.1 4.9 47 619-666 56-102 (166)
113 3kgz_A Cupin 2 conserved barre 27.4 67 0.0023 29.6 5.0 46 620-666 48-93 (156)
114 4e2q_A Ureidoglycine aminohydr 27.1 46 0.0016 33.9 4.1 49 618-666 72-120 (266)
115 1o4t_A Putative oxalate decarb 27.1 88 0.003 27.6 5.6 47 619-666 60-107 (133)
116 1sfn_A Conserved hypothetical 27.0 81 0.0028 31.3 5.9 50 617-667 166-216 (246)
117 2opk_A Hypothetical protein; p 26.9 51 0.0017 28.4 3.8 34 634-667 51-85 (112)
118 4i4a_A Similar to unknown prot 26.4 93 0.0032 26.8 5.6 47 619-666 37-83 (128)
119 1y9q_A Transcriptional regulat 26.2 1.2E+02 0.0042 28.4 6.9 46 620-666 108-155 (192)
120 1lr5_A Auxin binding protein 1 25.3 65 0.0022 29.5 4.5 49 618-666 43-99 (163)
121 3h7j_A Bacilysin biosynthesis 25.1 94 0.0032 30.7 6.0 47 618-665 36-82 (243)
122 3rvy_A ION transport protein; 25.0 1.2E+02 0.004 30.7 6.9 74 205-309 31-105 (285)
123 3i7d_A Sugar phosphate isomera 24.8 78 0.0027 29.2 5.0 49 618-667 45-95 (163)
124 1sq4_A GLXB, glyoxylate-induce 24.7 1.1E+02 0.0036 31.2 6.4 49 617-666 192-241 (278)
125 3nw4_A Gentisate 1,2-dioxygena 24.0 62 0.0021 34.6 4.5 51 618-668 105-155 (368)
126 3l2h_A Putative sugar phosphat 24.0 80 0.0027 28.8 4.9 48 618-666 48-97 (162)
127 2o8q_A Hypothetical protein; c 23.6 81 0.0028 27.6 4.7 31 636-666 64-94 (134)
128 1fi2_A Oxalate oxidase, germin 23.1 1.3E+02 0.0044 28.8 6.3 50 618-667 74-131 (201)
129 2d40_A Z3393, putative gentisa 22.9 74 0.0025 33.7 4.9 50 618-667 102-151 (354)
130 3myx_A Uncharacterized protein 22.5 74 0.0025 31.8 4.5 32 636-667 186-217 (238)
131 2vpv_A Protein MIF2, MIF2P; nu 22.4 74 0.0025 29.9 4.2 31 635-666 109-139 (166)
132 3bu7_A Gentisate 1,2-dioxygena 22.1 77 0.0026 34.2 4.9 78 618-720 296-376 (394)
133 1vj2_A Novel manganese-contain 21.9 91 0.0031 27.1 4.6 47 619-666 51-97 (126)
134 3cew_A Uncharacterized cupin p 21.6 1E+02 0.0035 26.5 4.9 47 619-666 29-77 (125)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=3.8e-33 Score=306.68 Aligned_cols=329 Identities=19% Similarity=0.191 Sum_probs=130.2
Q ss_pred EcCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEEcCCc
Q 004064 196 MNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPES 275 (776)
Q Consensus 196 i~P~S~~~~~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~~~~~ 275 (776)
++|+|+.. +.+++++++++++++.+.. .+. ........+..++.++-++|++|+++++..+. +
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t-~~~---------~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~-~--- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALT-IPD---------MSGRSRLALAALLAVIWGAYLLQLAATLLKRR-A--- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHT-SSS---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-S---
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHc-ccc---------hhhhHHHHHHHHHhHHHHHHHHHHHHhccccc-c---
Confidence 46777753 5555566666666655542 111 11111223445556666678999999884321 1
Q ss_pred cccCCCeEeeCHHHHHHHHHhh-hHHHHHHhh-cCHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHhhhHHHHHHhhhh
Q 004064 276 RVVGAGELVDHPKKIALNYLRG-YFFIDFFVA-LPLPQIIILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLF 353 (776)
Q Consensus 276 ~~~~~g~lV~d~k~Ia~~Ylk~-~F~~Dlis~-lP~~~i~~~~~~~~~~~~~~~~~~~~lLRl~rll~~l~Rl~ri~~l~ 353 (776)
...|.+. |.++|++++ +|+..++. + .... .|++|++|++ |+.|..+.+
T Consensus 66 ---------------~~~~~~~~~~i~Dl~~i~~p~~~~~~----~----~~~~---~r~lr~~R~l----rl~r~~~~~ 115 (355)
T 3beh_A 66 ---------------GVVRDRTPKIAIDVLAVLVPLAAFLL----D----GSPD---WSLYCAVWLL----KPLRDSTFF 115 (355)
T ss_dssp ---------------CSSCCCHHHHHHHHHHHHHHHHHHHS----C----CSGG---GGGGGGGGGS----HHHHTCSSH
T ss_pred ---------------cceeccCcchHHHHHHHHHHHHHHHh----c----cchh---HHHHHHHHHH----HHHHHHHHH
Confidence 1124434 899999999 68854321 1 1112 2233333222 333333332
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCcccccccccCCCCCCCCccccCccc
Q 004064 354 AGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTW 433 (776)
Q Consensus 354 ~~~~~~~~~~~~~~~~~i~~l~~~ll~~H~~aCiwy~i~~~~~~~c~~~~c~~~~~~~C~~~~~~g~~~~~~~~~~~~~~ 433 (776)
+.+.. ........++..++++++++|+.||++|.+..
T Consensus 116 ~~l~~---~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~---------------------------------------- 152 (355)
T 3beh_A 116 PVLGR---VLANEARNLIGVTTLFGVVLFAVALAAYVIER---------------------------------------- 152 (355)
T ss_dssp HHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------------
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------
Confidence 22211 11112233444555566788999999998752
Q ss_pred ccccccccCccccccCccccchhhhhhhcccCCcHHHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHH
Q 004064 434 KSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLF 513 (776)
Q Consensus 434 ~sWl~~~~~~~c~~~~~~~ygiy~~~~~l~~~~~~~~~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~f 513 (776)
|.. ++.+..|..|+||+++||||+||||+.|.+..|++++++++++|++++
T Consensus 153 --~~~---------------------------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~ 203 (355)
T 3beh_A 153 --DIQ---------------------------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIF 203 (355)
T ss_dssp --TTC---------------------------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred --CCC---------------------------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 110 122346899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCChhhHHHHHHHH
Q 004064 514 AFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL 593 (776)
Q Consensus 514 a~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~Lp~~Lr~eI~~~~ 593 (776)
++.+|.+++.+.+..+++ ++.+
T Consensus 204 ~~~~~~i~~~~~~~~~~~----------------------------~~~~------------------------------ 225 (355)
T 3beh_A 204 GLWAGILATGFYQEVRRG----------------------------DFVR------------------------------ 225 (355)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------------HHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------hhcc------------------------------
Confidence 999999988775321110 0000
Q ss_pred HH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhh
Q 004064 594 FK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTW 672 (776)
Q Consensus 594 ~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~ 672 (776)
.. .++++++|++++++.+++++..++.+.|+|||.|+++||.++++|||.+|.|+++..+ ...+.+|++|||.+++.
T Consensus 226 ~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~ 303 (355)
T 3beh_A 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALIS 303 (355)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--eeEECCCCEEeehHHhC
Confidence 23 6788999999999999999999999999999999999999999999999999998755 46899999999998874
Q ss_pred hccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 673 CLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 673 ~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
+ . ++.++++|.++|+++.|++++|.++++++
T Consensus 304 ~--------------~-----~~~~~~~A~~~~~l~~i~~~~f~~ll~~~ 334 (355)
T 3beh_A 304 G--------------E-----PRSATVSAATTVSLLSLHSADFQMLCSSS 334 (355)
T ss_dssp --------------------------------------------------
T ss_pred C--------------C-----CcceEEEECccEEEEEEeHHHHHHHHHHC
Confidence 2 1 47899999999999999999999999999
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=7.9e-30 Score=259.14 Aligned_cols=184 Identities=23% Similarity=0.432 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCChhhHHHHHHHHHH-hhhh
Q 004064 521 QNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKK 599 (776)
Q Consensus 521 ~~il~~~~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~-~l~~ 599 (776)
++|++++++++.+|+++++.+++||++++||.+|+.||++||+|.|..+++.+++++|+.||++||.++..+++. ++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578999999999999999999999999999999999999999999998999999999999999999999999999 66 8
Q ss_pred hhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhcccccc
Q 004064 600 VRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSV 679 (776)
Q Consensus 600 ~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~~~~~ 679 (776)
+|+|+++++++++.|+..++.+.|.||++|+++||.++++|||.+|.|+++.++..+..+.+|++|||.+++.+
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~------ 153 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKE------ 153 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSS------
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccC------
Confidence 99999999999999999999999999999999999999999999999999985558999999999999988742
Q ss_pred ccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 680 NRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 680 ~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
...++.++++|+++|+++.|++++|.++++.+
T Consensus 154 -----------~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~ 185 (212)
T 3ukn_A 154 -----------QVIKTNANVKALTYCDLQYISLKGLREVLRLY 185 (212)
T ss_dssp -----------SCCBBCSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred -----------CCCCcceEEEEcccEEEEEEeHHHHHHHHHHC
Confidence 10037899999999999999999999999999
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.96 E-value=9.1e-29 Score=248.57 Aligned_cols=184 Identities=23% Similarity=0.403 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCChhhHHHHHHHHHH-hhhhhhhcc
Q 004064 526 ALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFA 604 (776)
Q Consensus 526 ~~~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~-~l~~~~~F~ 604 (776)
+++.++.+|+++++.+++||++++||.+|+.||++||+|.|. +++.+|+++|+.||+.||.+|..+++. +++++++|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567889999999999999999999999999999999999996 678999999999999999999999999 999999999
Q ss_pred cCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCc-eEEEcCCCCeeechhhhhhcccccccccc
Q 004064 605 LMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCLEHSSVNRDA 683 (776)
Q Consensus 605 ~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g-~i~~l~~G~~fGe~~ll~~~~~~~~~~~~ 683 (776)
++++++++.|+..++.+.|.||++|+++|+.++++|||.+|.|+++..+| .+..+.+|++|||.+++.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~---------- 150 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTR---------- 150 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHS----------
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCC----------
Confidence 99999999999999999999999999999999999999999999998777 7899999999999998752
Q ss_pred ccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhccCHHHHHHH
Q 004064 684 KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI 735 (776)
Q Consensus 684 ~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~ 735 (776)
. ++.++++|+++|+++.|++++|.++++++ |.+...+
T Consensus 151 ----~-----~~~~~~~a~~~~~l~~i~~~~f~~ll~~~------p~~~~~~ 187 (198)
T 2ptm_A 151 ----E-----RRVASVKCETYCTLFSLSVQHFNQVLDEF------PAMRKTM 187 (198)
T ss_dssp ----S-----CCSSEEEESSCEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_pred ----C-----ccceEEEEeeEEEEEEEeHHHHHHHHHHC------hHHHHHH
Confidence 1 47899999999999999999999999999 6655433
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.96 E-value=1.5e-28 Score=247.81 Aligned_cols=178 Identities=23% Similarity=0.356 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCChhhHHHHHHHHHH-hhhhhhhc
Q 004064 525 QALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIF 603 (776)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~-~l~~~~~F 603 (776)
++++.++.+|+++++.+++||++++||.+|+.||++||+|.|. +++.+++++|+.||+.||.+|..+.+. +++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678899999999999999999999999999999999999996 588999999999999999999999999 99999999
Q ss_pred ccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhcccccccccc
Q 004064 604 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDA 683 (776)
Q Consensus 604 ~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~~~~~~~~~ 683 (776)
.++++++++.|+..++.+.|.||++|+++|+.++++|||.+|.|+++..+|....+.+|++|||.+++.+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~---------- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR---------- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHHC----------
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHhcC----------
Confidence 9999999999999999999999999999999999999999999999988886668999999999998752
Q ss_pred ccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 684 KRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 684 ~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
. ++.++++|+++|+++.|++++|.++++.+
T Consensus 151 -------~--~~~~~v~a~~~~~l~~i~~~~f~~ll~~~ 180 (202)
T 3bpz_A 151 -------G--RRTASVRADTYCRLYSLSVDNFNEVLEEY 180 (202)
T ss_dssp -------S--BCSSEEEESSCEEEEEEEHHHHHHHHHHS
T ss_pred -------C--CcccEEEEeeEEEEEEEEHHHHHHHHHHC
Confidence 1 47899999999999999999999999999
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=1.5e-21 Score=200.22 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEEcCCccccCCCeEe
Q 004064 205 QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELV 284 (776)
Q Consensus 205 ~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~~~~~~~~~~g~lV 284 (776)
.||.+++++.+++++++++...... +.+....+..+|.+++++|.+|++++|.++..
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~----------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~------------- 65 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKSGD------------- 65 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHH----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc----------ChhhhhHHHHHHHHHHHHHHHHHHHHHccccc-------------
Confidence 4899999989988888777644321 12346678899999999999999999988641
Q ss_pred eCHHHHHHHHHhhhHHHHHHhhcCHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHhhhHHHHHHhhhhhccccc-chhh
Q 004064 285 DHPKKIALNYLRGYFFIDFFVALPLPQIIILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIF 363 (776)
Q Consensus 285 ~d~k~Ia~~Ylk~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~lLRl~rll~~l~Rl~ri~~l~~~~~~~-~~~~ 363 (776)
+++|+|+ +++|+++++|++.+..... . .+. ....+++|++|++ |++|+.+...+..+. ....
T Consensus 66 ------~~~y~~~-~iiDllailP~~~~~~~~~-~--~~~---~~~lr~lRllRll----R~~r~~~~~~~~~~~l~~~~ 128 (223)
T 1orq_C 66 ------PAGYVKK-TLYEIPALVPAGLLALIEG-H--LAG---LGLFRLVRLLRFL----RILLIISRGSKFLSAIADAA 128 (223)
T ss_dssp ------HHHHHHH-HHHHCTTHHHHHHHHHHHH-H--HHT---TTCHHHHHHHHHH----HHHHHHHSCSSHHHHHHHHH
T ss_pred ------HHHHHHH-hHHHHHHHHHHHHHHHHhc-c--hhH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4799998 9999999999976643100 0 000 1123444444333 444443322221110 0011
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCcccccccccCCCCCCCCccccCcccccccccccCc
Q 004064 364 ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQAS 443 (776)
Q Consensus 364 ~~~~~~~i~~l~~~ll~~H~~aCiwy~i~~~~~~~c~~~~c~~~~~~~C~~~~~~g~~~~~~~~~~~~~~~sWl~~~~~~ 443 (776)
.. ..+...++..++..|+.||++|.+... ..
T Consensus 129 ~~--~~l~~~~~~~~~~~~~~~~~~~~~e~~-------------------------------------~~---------- 159 (223)
T 1orq_C 129 DK--IRFYHLFGAVMLTVLYGAFAIYIVEYP-------------------------------------DP---------- 159 (223)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHTTSS-------------------------------------ST----------
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhC-------------------------------------Cc----------
Confidence 11 123334445557789999998876310 00
Q ss_pred cccccCccccchhhhhhhcccCCcHHHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 444 DCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNF 523 (776)
Q Consensus 444 ~c~~~~~~~ygiy~~~~~l~~~~~~~~~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~i 523 (776)
++....|..|+||+++|+||+||||+.|.+..|++++++.+++|++++|+.+|.+++.
T Consensus 160 ----------------------~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~ 217 (223)
T 1orq_C 160 ----------------------NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217 (223)
T ss_dssp ----------------------TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112368999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 004064 524 LQA 526 (776)
Q Consensus 524 l~~ 526 (776)
+++
T Consensus 218 ~~~ 220 (223)
T 1orq_C 218 FQK 220 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.80 E-value=2e-19 Score=205.68 Aligned_cols=293 Identities=12% Similarity=0.150 Sum_probs=152.1
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC----c-----------eee--ecCccchhHHHHHHHHHHHH
Q 004064 197 NPH-TRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNN----K-----------CIV--INWPWTKAIVVVRSMTDLIY 258 (776)
Q Consensus 197 ~P~-S~~~~~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~----~-----------~~~--~~~~~~~~~~~~~~i~d~if 258 (776)
+|. |...+.|+.++++++++++++..+...- ..+.+. . ... -.......+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETLP-IFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 5778899999888888888877665321 111100 0 000 00113557889999999999
Q ss_pred HHHHHHhcceeEEcCCccccCCCeEeeCHHHHHHHHHhh-hHHHHHHhhcCHHHHHHHHhcCccCCCcch--hHHHHHHH
Q 004064 259 FLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRG-YFFIDFFVALPLPQIIILLVLPNILGSSGA--NYAKNLLR 335 (776)
Q Consensus 259 ~lDI~l~F~tay~~~~~~~~~~g~lV~d~k~Ia~~Ylk~-~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~--~~~~~lLR 335 (776)
.+|++++|.++-. ..+|+++ |.++|+++++|+...+..... ...+. ......+|
T Consensus 253 tiE~ilR~~~~~~-------------------k~~Y~ks~wniiDli~iip~~i~l~~~~~----~~~~~~~~~~~~~lr 309 (514)
T 2r9r_B 253 SFEFLVRFFACPS-------------------KAGFFTNIMNIIDIVAIIPYYVTIFLTES----NKSVLQFQNVRRVVQ 309 (514)
T ss_dssp HHHHHHHHHHSSC-------------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHT----SCSHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCc-------------------HHHHHhchhHHHHHHHHHHHHHHHHhhhc----cccchhhhhHHHHHH
Confidence 9999999986521 2479998 899999999999654433211 11111 11134455
Q ss_pred HHHHHhhhHHHHHHhhhhhccccc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCcccc
Q 004064 336 AAILLQYIPRLYKFLPLFAGQSST---GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDC 412 (776)
Q Consensus 336 l~rll~~l~Rl~ri~~l~~~~~~~---~~~~~~~~~~~i~~l~~~ll~~H~~aCiwy~i~~~~~~~c~~~~c~~~~~~~C 412 (776)
++|++ |++|++++.+..... ...+......+..++++.++.++++||++|++..
T Consensus 310 vlRll----RvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~------------------- 366 (514)
T 2r9r_B 310 IFRIM----RILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA------------------- 366 (514)
T ss_dssp HHHHH----GGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec-------------------
Confidence 55544 444544444432211 1111112122222333334567777887775420
Q ss_pred cccccCCCCCCCCccccCcccccccccccCccccccCccccchhhhhhhcccCCcHHHHHHHHHHHHhhhhccccCCCcc
Q 004064 413 KKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTP 492 (776)
Q Consensus 413 ~~~~~~g~~~~~~~~~~~~~~~sWl~~~~~~~c~~~~~~~ygiy~~~~~l~~~~~~~~~Yl~slYwa~~t~tTvGygdi~ 492 (776)
|.. .+.+..|..|+||+++||||+||||+.
T Consensus 367 -----------------------~~~---------------------------~~~F~s~~~a~y~~~vT~TTvGYGDi~ 396 (514)
T 2r9r_B 367 -----------------------DER---------------------------DSQFPSIPDAFWWAVVSMTTVGYGDMV 396 (514)
T ss_dssp -----------------------TCT---------------------------TCSCSSHHHHHHHHHHHHTTCCCSSSC
T ss_pred -----------------------cCC---------------------------CccccchhhhhheeeeEEEecccCCCC
Confidence 100 122235789999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCC
Q 004064 493 SYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGV 572 (776)
Q Consensus 493 ~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~ 572 (776)
|.+..+++++++++++|++++++++|.+.+.++....++.+ ++..+..++++.-...|.....+ + .+.+..
T Consensus 397 P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~ 467 (514)
T 2r9r_B 397 PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSAST 467 (514)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred CCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccCCC
Confidence 99999999999999999999999999999988776553332 22222233344333333222111 0 022333
Q ss_pred ChhHHHhcCChhhHHHHHHHHHH
Q 004064 573 NEDMLFTNLPEDLQREIRRHLFK 595 (776)
Q Consensus 573 ~e~~il~~Lp~~Lr~eI~~~~~~ 595 (776)
.++.-..+|.+.++.++......
T Consensus 468 ~~~s~~~el~e~~~~~~~~~~~~ 490 (514)
T 2r9r_B 468 ISKSDYMEIQEGVNNSNEDFREE 490 (514)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 45556677778777776654433
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.76 E-value=1.1e-17 Score=160.83 Aligned_cols=139 Identities=20% Similarity=0.370 Sum_probs=117.5
Q ss_pred hhHHHhcCChhhHHHHHHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEec
Q 004064 574 EDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE 652 (776)
Q Consensus 574 e~~il~~Lp~~Lr~eI~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~ 652 (776)
.+++++.||+.||.++..+++. +++++++|.+++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 4569999999999999999999 999999999999999999999999999999999999999999999999999999986
Q ss_pred CceEEEcCCCCeeechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhccCHHHH
Q 004064 653 DGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQ 732 (776)
Q Consensus 653 ~g~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~~p~~~ 732 (776)
+..+..+.+|++||+.+++.. ...++.++++|.++|+++.|++++|.++++++ |.+.
T Consensus 85 ~~~~~~~~~G~~fG~~~~~~~-----------------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------p~~~ 141 (160)
T 4f8a_A 85 DEVVAILGKGDVFGDVFWKEA-----------------TLAQSCANVRALTYCDLHVIKRDALQKVLEFY------TAFS 141 (160)
T ss_dssp TEEEEEEETTCEEECCTTTCS-----------------SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------HHHH
T ss_pred CEEEEEecCCCEeCcHHHhcC-----------------cccceEEEEEECCceEEEEEcHHHHHHHHHHH------HHHH
Confidence 668999999999999988731 10157899999999999999999999999999 6654
Q ss_pred HHH
Q 004064 733 GAI 735 (776)
Q Consensus 733 ~~~ 735 (776)
..+
T Consensus 142 ~~~ 144 (160)
T 4f8a_A 142 HSF 144 (160)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.67 E-value=5e-16 Score=145.93 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=113.7
Q ss_pred cCChhhHHHHHHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEE
Q 004064 580 NLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVC 658 (776)
Q Consensus 580 ~Lp~~Lr~eI~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~ 658 (776)
++|..+|.+...+... +++++++|.+++++.++.|+..++.+.|.+|++|+++|+.++.+|||.+|.|++..++..+..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~ 86 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT 86 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEE
Confidence 6888999998888888 999999999999999999999999999999999999999999999999999999764448899
Q ss_pred cCCCCeeechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 659 LSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 659 l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
+.+|++||+.+++.+ . ++.++++|+++|+++.|++++|.++++++
T Consensus 87 ~~~G~~fGe~~~l~~--------------~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 131 (139)
T 3ocp_A 87 MGPGKVFGELAILYN--------------C-----TRTATVKTLVNVKLWAIDRQCFQTIMMRT 131 (139)
T ss_dssp ECTTCEESCHHHHHC--------------C-----CCSSEEEESSCEEEEEEEHHHHHHHHTC-
T ss_pred eCCCCEeccHHHHCC--------------C-----CcceEEEECcceEEEEEcHHHHHHHHhhC
Confidence 999999999998742 1 47899999999999999999999999999
No 9
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.58 E-value=3.4e-14 Score=133.18 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=97.6
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---e---EEEcCCCCeeec
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---I---AVCLSEGDACGE 667 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~---i~~l~~G~~fGe 667 (776)
+++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| . +..+.+|++||+
T Consensus 7 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~ 86 (142)
T 3mdp_A 7 RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGV 86 (142)
T ss_dssp GGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECG
T ss_pred HHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEech
Confidence 68899999999999999999999999999999999999999999999999999986 344 5 889999999999
Q ss_pred hhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 668 ELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 668 ~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
.+++.. . ++.++++|.++|+++.|++++|.++++++
T Consensus 87 ~~~~~~--------------~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 122 (142)
T 3mdp_A 87 SSLIKP--------------Y-----HYTSSARATKPVRVVDINGARLREMSENN 122 (142)
T ss_dssp GGSSTT--------------C-----BCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred HHHcCC--------------C-----CceEEEEECCcEEEEEEeHHHHHHHHHHC
Confidence 988732 1 47889999999999999999999999999
No 10
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.57 E-value=3.7e-14 Score=136.69 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=105.4
Q ss_pred HHHHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe-cCc---eEEEcCCC
Q 004064 588 EIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG---IAVCLSEG 662 (776)
Q Consensus 588 eI~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~-~~g---~i~~l~~G 662 (776)
+....... +++++++|.+++++.++.|+..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| .+..+.+|
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 33344455 89999999999999999999999999999999999999999999999999999986 445 78889999
Q ss_pred CeeechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 663 DACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 663 ~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
++||+.+++.+ . ++.++++|+++|+++.|++++|.++++++|.+
T Consensus 110 ~~fGe~~~~~~--------------~-----~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~ 153 (161)
T 3idb_B 110 GSFGELALMYN--------------T-----PRAATITATSPGALWGLDRVTFRRIIVKNNAK 153 (161)
T ss_dssp CEECGGGGTCC--------------C-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHT
T ss_pred CEechHHHHcC--------------C-----CcccEEEECCCeEEEEEeHHHHHHHHHHCHHH
Confidence 99999998732 1 47899999999999999999999999999443
No 11
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.56 E-value=3e-14 Score=136.39 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=101.1
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhcc
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLE 675 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~ 675 (776)
+++++++|.+++++.++.|+..++.+.|.+|++|+++|+.++++|||.+|.|+++.++..+..+.+|++||+.+++.+
T Consensus 39 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~~~~~-- 116 (154)
T 3pna_A 39 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYG-- 116 (154)
T ss_dssp HHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEECCHHHHHC--
T ss_pred HHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEeeehHhhcC--
Confidence 889999999999999999999999999999999999999999999999999999985558889999999999998742
Q ss_pred ccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 676 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 676 ~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
. ++.++++|+++|+++.|++++|.++++++
T Consensus 117 ------------~-----~~~~~v~A~~~~~~~~i~~~~~~~ll~~~ 146 (154)
T 3pna_A 117 ------------T-----PRAATVKAKTNVKLWGIDRDSYRRILMGS 146 (154)
T ss_dssp ------------C-----CCSSEEEESSCEEEEEEEHHHHHHHTHHH
T ss_pred ------------C-----CcceEEEECcceEEEEEeHHHHHHHHHhC
Confidence 1 47899999999999999999999999999
No 12
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.56 E-value=8.5e-14 Score=138.09 Aligned_cols=135 Identities=13% Similarity=0.194 Sum_probs=113.1
Q ss_pred hHHHhcCChhh----HHHHHHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEE
Q 004064 575 DMLFTNLPEDL----QREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMES 649 (776)
Q Consensus 575 ~~il~~Lp~~L----r~eI~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v 649 (776)
..+.+.++|+| +.+...+... +++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|++
T Consensus 14 ~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v 93 (187)
T 3gyd_A 14 NLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNV 93 (187)
T ss_dssp HHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEE
T ss_pred ceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEE
Confidence 34445555443 2333444445 899999999999999999999999999999999999999999999999999999
Q ss_pred Ee--cCc---eEEEcCCCCeeechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHh
Q 004064 650 IG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFAR 724 (776)
Q Consensus 650 ~~--~~g---~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~ 724 (776)
+. .+| .+..+.+|++||+.+++.+ . ++.++++|+++|+++.|++++|.++++++
T Consensus 94 ~~~~~~g~~~~~~~~~~G~~fGe~~~l~~-----------------~--~~~~~v~A~~~~~v~~i~~~~~~~l~~~~-- 152 (187)
T 3gyd_A 94 IKDIPNKGIQTIAKVGAGAIIGEMSMIDG-----------------M--PRSASCVASLPTDFAVLSRDALYQLLANM-- 152 (187)
T ss_dssp EEEETTTEEEEEEEEETTCEESHHHHHHC-----------------C--CCSSEEEEEEEEEEEEEEHHHHHHHHHHC--
T ss_pred EEECCCCCeEEEEEccCCCeeeeHHHhCC-----------------C--CeeEEEEECCCeEEEEEcHHHHHHHHHHC--
Confidence 86 355 7889999999999998742 1 47899999999999999999999999999
Q ss_pred hccCHHHHHH
Q 004064 725 FLRSPRVQGA 734 (776)
Q Consensus 725 ~l~~p~~~~~ 734 (776)
|.+...
T Consensus 153 ----p~~~~~ 158 (187)
T 3gyd_A 153 ----PKLGNK 158 (187)
T ss_dssp ----HHHHHH
T ss_pred ----hHHHHH
Confidence 665543
No 13
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.55 E-value=6.7e-14 Score=132.14 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=103.2
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
+++++++|..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| .+..+.+|++||+.++
T Consensus 6 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~ 85 (149)
T 2pqq_A 6 VLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSL 85 (149)
T ss_dssp GGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGG
T ss_pred HhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHh
Confidence 78899999999999999999999999999999999999999999999999999986 345 6889999999999988
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhccCHHHHHHH
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI 735 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~ 735 (776)
+.+ . ++.++++|+++|+++.|++++|.++++++ |.+...+
T Consensus 86 ~~~-----------------~--~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------p~~~~~~ 125 (149)
T 2pqq_A 86 FDP-----------------G--PRTATGTALTEVKLLALGHGDLQPWLNVR------PEVATAL 125 (149)
T ss_dssp TSC-----------------E--ECSSEEEESSCEEEEEEEGGGHHHHHHHC------THHHHHH
T ss_pred cCC-----------------C--CcceEEEEccceEEEEEeHHHHHHHHHhC------cHHHHHH
Confidence 732 1 47899999999999999999999999999 6654443
No 14
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.53 E-value=1.7e-13 Score=138.15 Aligned_cols=110 Identities=19% Similarity=0.268 Sum_probs=97.9
Q ss_pred hhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhh
Q 004064 597 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLT 671 (776)
Q Consensus 597 l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll 671 (776)
++++|+|.+++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| .+..+.+|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 4678999999999999999999999999999999999999999999999999986 456 78899999999999887
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 672 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 672 ~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
.+ . ++.++++|+++|+++.|++++|.+++.++|++
T Consensus 81 ~~----------------~---~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~ 115 (216)
T 4ev0_A 81 DE----------------G---ERSASAVAVEDTELLALFREDYLALIRRLPLV 115 (216)
T ss_dssp HC----------------C---BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHH
T ss_pred CC----------------C---CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHH
Confidence 42 1 47899999999999999999999999999433
No 15
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.52 E-value=1.1e-13 Score=129.23 Aligned_cols=106 Identities=28% Similarity=0.340 Sum_probs=98.3
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhcc
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLE 675 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~ 675 (776)
+++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ ...+.+|++||+.+++.+
T Consensus 12 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G~~~~~~~-- 87 (138)
T 1vp6_A 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALISG-- 87 (138)
T ss_dssp HHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTCEECHHHHHHC--
T ss_pred HHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCCEeeehHhccC--
Confidence 7899999999999999999999999999999999999999999999999999998755 458999999999988742
Q ss_pred ccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 676 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 676 ~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
. ++.++++|+++|+++.|++++|.++++++
T Consensus 88 ---------------~--~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 117 (138)
T 1vp6_A 88 ---------------E--PRSATVSAATTVSLLSLHSADFQMLCSSS 117 (138)
T ss_dssp ---------------C--CCSSCEEESSSEEEEEEEHHHHHHHHHHC
T ss_pred ---------------C--CceeEEEECCCEEEEEECHHHHHHHHHHC
Confidence 1 46799999999999999999999999999
No 16
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.52 E-value=1.2e-13 Score=137.00 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=99.0
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeech-h
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEE-L 669 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~-~ 669 (776)
++++++.|.+++++.++.++..++.+.|++|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++|||. +
T Consensus 8 l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~ 87 (194)
T 3dn7_A 8 LINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMA 87 (194)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHH
Confidence 77889999999999999999999999999999999999999999999999999986 456 78889999999987 5
Q ss_pred hhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 670 LTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 670 ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
++.+ . ++.++++|+++|+++.|++++|.+++.++|
T Consensus 88 ~~~~-----------------~--~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 122 (194)
T 3dn7_A 88 FQKQ-----------------Q--PADFYIQSVENCELLSITYTEQENLFERIP 122 (194)
T ss_dssp HHHT-----------------C--BCSSEEEESSCEEEEEEEHHHHHHHHHHCT
T ss_pred HhcC-----------------C--CCceEEEEECCEEEEEEeHHHHHHHHHhCH
Confidence 5431 1 478999999999999999999999999993
No 17
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.52 E-value=8.6e-14 Score=148.13 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=117.1
Q ss_pred hHHHhcCChhhHHHHHHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecC
Q 004064 575 DMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGED 653 (776)
Q Consensus 575 ~~il~~Lp~~Lr~eI~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~ 653 (776)
.....++|...|.+...+... +++++++|+.++++.++.|+..++.+.|.+|++|+++||.++.+|||.+|.|++..++
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g 97 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG 97 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC
Confidence 344667999999999988888 9999999999999999999999999999999999999999999999999999997655
Q ss_pred ceEEEcCCCCeeechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 654 GIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 654 g~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
..+..+.+|++|||.+++.+ . ++.++++|.++|+++.|++++|.+++..+|
T Consensus 98 ~~~~~~~~G~~fGe~~ll~~--------------~-----~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~ 148 (299)
T 3shr_A 98 VKLCTMGPGKVFGELAILYN--------------C-----TRTATVKTLVNVKLWAIDRQCFQTIMMRTG 148 (299)
T ss_dssp EEEEEECTTCEESCSGGGTT--------------T-----BCCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEeCCCCeeeHhHHhcC--------------C-----CCCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence 58899999999999998742 1 578999999999999999999999999993
No 18
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=135.66 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=105.3
Q ss_pred ChhhHHHHHHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEec-CCCEEEccCCccCEEEEEEeeEEEEEecCceEEEc
Q 004064 582 PEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYI-SGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCL 659 (776)
Q Consensus 582 p~~Lr~eI~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~-~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l 659 (776)
||..|.+-...... +++++++|..++++.++.|+..++.+.|. +|++|+++|+.++.+|||.+|.|+++..+|....+
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l 81 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENL 81 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEE
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEe
Confidence 34444443333344 88999999999999999999999999999 99999999999999999999999999878866889
Q ss_pred CCCCeeechhhhhhccccccccccccccCCCCcccceeEE-EEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 660 SEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTV-RCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 660 ~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv-~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
.+|++||+.+++.+ . ++.+++ +|+++|+++.|++++|.+++++++
T Consensus 82 ~~G~~fG~~~~~~~--------------~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 82 FMGNSFGITPTLDK--------------Q-----YMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp CTTCEESCCSSSCC--------------E-----ECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred cCCCccChhHhcCC--------------C-----cceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 99999999988632 1 466788 999999999999999999998773
No 19
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.51 E-value=2e-14 Score=137.84 Aligned_cols=64 Identities=9% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 470 TRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLD 533 (776)
Q Consensus 470 ~~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~ 533 (776)
..|..|+||+++|+|||||||+.|.+..+++++++.+++|++++|+++|.+++.+.+...++.+
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999999999998876554433
No 20
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.50 E-value=1.4e-13 Score=130.90 Aligned_cols=109 Identities=11% Similarity=0.164 Sum_probs=98.7
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
+++++++|..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| .+..+.+|++||+..+
T Consensus 13 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~ 92 (154)
T 2z69_A 13 LLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMM 92 (154)
T ss_dssp HHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGG
T ss_pred HhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhh
Confidence 78899999999999999999999999999999999999999999999999999986 345 6889999999999998
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
+.+ .| ++.++++|+++|+++.|++++|.++++++
T Consensus 93 ~~~--------------~~----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 126 (154)
T 2z69_A 93 FMD--------------TP----NYVATAQAVVPSQLFRFSNKAYLRQLQDN 126 (154)
T ss_dssp GSS--------------CS----BCSSEEEESSSEEEEEEEHHHHHHHHTTC
T ss_pred ccC--------------CC----CCceEEEEccceEEEEECHHHHHHHHHHC
Confidence 732 11 27899999999999999999999999999
No 21
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.49 E-value=5.5e-14 Score=131.28 Aligned_cols=117 Identities=42% Similarity=0.662 Sum_probs=98.1
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe-cCc---eEE--EcCCCCeeechh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG---IAV--CLSEGDACGEEL 669 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~-~~g---~i~--~l~~G~~fGe~~ 669 (776)
+++++++|..++++.++.|+..++.+.|.+|++|+++||.++.+|||.+|.|++.. .+| .+. .+.+|++|||.+
T Consensus 7 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~ 86 (137)
T 1wgp_A 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDEL 86 (137)
T ss_dssp SCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHH
T ss_pred HHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHH
Confidence 67889999999999999999999999999999999999999999999999999764 445 334 999999999998
Q ss_pred h---hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 670 L---TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 670 l---l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+ +... .....| ++.++++|+++|+++.|++++|.++++++|++
T Consensus 87 l~~~~~~~---------~~~~~~----~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l 132 (137)
T 1wgp_A 87 LTWALDPK---------SGSNLP----SSTRTVKALTEVEAFALIADELKFVASQFRRS 132 (137)
T ss_dssp HHHHHCSS---------CCSSSC----BCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred HHHHhccc---------cccccc----cceeEEEEeEEEEEEEECHHHHHHHHHHCHhh
Confidence 6 4210 000011 25789999999999999999999999999443
No 22
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.48 E-value=2.5e-13 Score=138.70 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=100.2
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
+++++++|.+++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++||+.++
T Consensus 7 ~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~ 86 (231)
T 3e97_A 7 DLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAV 86 (231)
T ss_dssp HHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTT
T ss_pred HHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHH
Confidence 68899999999999999999999999999999999999999999999999999986 455 6889999999999988
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+.+ . ++.++++|+++|+++.|++++|.+++..+|.+
T Consensus 87 ~~~--------------~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~ 122 (231)
T 3e97_A 87 LAH--------------Q-----ERSASVRALTPVRTLMLHREHFELILRRHPRV 122 (231)
T ss_dssp TCC--------------C-----CCCEEEEESSCEEEEEECHHHHHHHHHHCHHH
T ss_pred hCC--------------C-----CceEEEEECCcEEEEEEeHHHHHHHHHHCHHH
Confidence 731 1 47899999999999999999999999999443
No 23
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.48 E-value=2e-13 Score=139.97 Aligned_cols=109 Identities=11% Similarity=0.205 Sum_probs=100.9
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
+++++++|..++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++||+.++
T Consensus 12 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~ 91 (237)
T 3fx3_A 12 IARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVA 91 (237)
T ss_dssp HHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHH
T ss_pred HHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHH
Confidence 78999999999999999999999999999999999999999999999999999986 455 7889999999999998
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
+.+ . ++.++++|+++|+++.|++++|.+++.++|
T Consensus 92 ~~~----------------~---~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 125 (237)
T 3fx3_A 92 LRN----------------T---PYPVSAEAVTPCEVMHIPSPVFVSLMRRDP 125 (237)
T ss_dssp HHT----------------C---CCSSEEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred hcC----------------C---CCCceEEECCceEEEEEcHHHHHHHHHHCH
Confidence 742 1 478999999999999999999999999993
No 24
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.48 E-value=4.2e-13 Score=128.16 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQN------FLQA----LVKRRLDMSLRRRD 540 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~~ 540 (776)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|+.+++++++.+++ +... .+....+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999999887 3333 25556677788999
Q ss_pred HHHHHHHcCCCHHHHHH
Q 004064 541 VEQWMRHRRLPEQLRRQ 557 (776)
Q Consensus 541 v~~ym~~~~lp~~L~~r 557 (776)
++++|++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999876
No 25
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.47 E-value=5.3e-13 Score=134.98 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=99.5
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCe--eech
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDA--CGEE 668 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~--fGe~ 668 (776)
+++++|+|..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. ++| ++..+.+|++ ||+.
T Consensus 4 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~ 83 (220)
T 3dv8_A 4 FENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSAS 83 (220)
T ss_dssp -CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGG
T ss_pred hHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHH
Confidence 67889999999999999999999999999999999999999999999999999986 455 6789999999 6888
Q ss_pred hhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 669 LLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 669 ~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+++.+ . ++..+++|+++|+++.|++++|.+++.++|++
T Consensus 84 ~~~~~--------------~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~ 121 (220)
T 3dv8_A 84 CIMRS--------------I-----QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPV 121 (220)
T ss_dssp GGCTT--------------C-----CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHH
T ss_pred HHhCC--------------C-----CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHH
Confidence 88632 1 47899999999999999999999999999433
No 26
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.46 E-value=7.9e-13 Score=134.66 Aligned_cols=114 Identities=14% Similarity=0.209 Sum_probs=93.5
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
.+++.++|..++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++||+..+
T Consensus 12 ~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~ 91 (230)
T 3iwz_A 12 TVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGL 91 (230)
T ss_dssp ----------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGG
T ss_pred hhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhh
Confidence 68889999999999999999999999999999999999999999999999999986 455 7889999999999998
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh-----Hhhcc
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF-----ARFLR 727 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~-----~~~l~ 727 (776)
+.+ + .++.++++|+++|+++.|++++|.+++.++ |++..
T Consensus 92 ~~~-----------------~-~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~ 135 (230)
T 3iwz_A 92 FIE-----------------S-DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILY 135 (230)
T ss_dssp TSC-----------------C-SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHH
T ss_pred hcC-----------------C-CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHH
Confidence 731 1 147889999999999999999999999998 76643
No 27
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.45 E-value=2.6e-13 Score=138.16 Aligned_cols=111 Identities=16% Similarity=0.236 Sum_probs=100.9
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
+++++++|..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| .+..+.+|++||+.++
T Consensus 7 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~ 86 (227)
T 3d0s_A 7 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSI 86 (227)
T ss_dssp HHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHH
T ss_pred HHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHH
Confidence 67899999999999999999999999999999999999999999999999999986 455 6889999999999988
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+.+ . ++.++++|+++|+++.|++++|.++++++|.+
T Consensus 87 ~~~--------------~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 122 (227)
T 3d0s_A 87 FDP--------------G-----PRTSSATTITEVRAVSMDRDALRSWIADRPEI 122 (227)
T ss_dssp HSC--------------S-----CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHH
T ss_pred cCC--------------C-----CceeEEEEcccEEEEEEeHHHHHHHHHHChHH
Confidence 732 1 47899999999999999999999999999433
No 28
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.45 E-value=1e-12 Score=134.28 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=97.8
Q ss_pred hhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhh
Q 004064 597 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLT 671 (776)
Q Consensus 597 l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll 671 (776)
...+|+|..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| ++..+.+|++||+.+++
T Consensus 12 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 12 HLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF 91 (232)
T ss_dssp GGSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH
T ss_pred ccccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhh
Confidence 3468999999999999999999999999999999999999999999999999985 345 78999999999999887
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 672 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 672 ~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
.+ . ++.++++|+++|+++.|++++|.++++++|++
T Consensus 92 ~~--------------~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 126 (232)
T 2gau_A 92 AE--------------E-----TCSSTAIAVENSKVLAIPVEAIEALLKGNTSF 126 (232)
T ss_dssp HT--------------S-----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHH
T ss_pred CC--------------C-----CcceEEEEecceEEEEEEHHHHHHHHHHCHHH
Confidence 42 1 47899999999999999999999999999443
No 29
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.43 E-value=3.4e-13 Score=137.12 Aligned_cols=112 Identities=11% Similarity=0.164 Sum_probs=100.5
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
+++++++|.+++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| .+..+.+|++||+.++
T Consensus 10 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~ 89 (227)
T 3dkw_A 10 LLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMM 89 (227)
T ss_dssp HHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTT
T ss_pred HHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHh
Confidence 78899999999999999999999999999999999999999999999999999986 445 7788999999999988
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+.+ .| .+.++++|+++|+++.|++++|.+++.++|.+
T Consensus 90 ~~~--------------~~----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~ 126 (227)
T 3dkw_A 90 FMD--------------TP----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPL 126 (227)
T ss_dssp TTT--------------CS----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHH
T ss_pred cCC--------------CC----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHH
Confidence 632 11 26789999999999999999999999999433
No 30
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.43 E-value=8.6e-13 Score=135.57 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=102.3
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCc-eEEEcCCCCeeechhhhhhc
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWCL 674 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g-~i~~l~~G~~fGe~~ll~~~ 674 (776)
+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++..+. .+..+.+|++|||.+++.+
T Consensus 126 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~- 204 (246)
T 3of1_A 126 LLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLND- 204 (246)
T ss_dssp HHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHT-
T ss_pred HHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCC-
Confidence 78889999999999999999999999999999999999999999999999999998655 8899999999999998842
Q ss_pred cccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 675 EHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 675 ~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
. ++.++++|.++|+++.|++++|.+++..+|+.
T Consensus 205 -------------~-----~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~ 237 (246)
T 3of1_A 205 -------------L-----PRQATVTATKRTKVATLGKSGFQRLLGPAVDV 237 (246)
T ss_dssp -------------C-----BCSSEEEESSCEEEEEEEHHHHHHHCTTHHHH
T ss_pred -------------C-----CcccEEEECCCEEEEEEeHHHHHHHhccHHHH
Confidence 1 47899999999999999999999999999433
No 31
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.42 E-value=2.1e-12 Score=132.27 Aligned_cols=110 Identities=11% Similarity=0.127 Sum_probs=100.0
Q ss_pred hhhhhhhcccCCHHHHHHHHhH--ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeech
Q 004064 596 FVKKVRIFALMDEPILDAICER--LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEE 668 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~--l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~ 668 (776)
++.++++|..++++.++.++.. ++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| ++..+.+|++||+.
T Consensus 19 ~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~ 98 (232)
T 1zyb_A 19 TLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQ 98 (232)
T ss_dssp TGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGG
T ss_pred HHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeeh
Confidence 7899999999999999999998 9999999999999999999999999999999985 455 78899999999999
Q ss_pred hhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 669 LLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 669 ~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
+++.+ .| ++.++++|+++|+++.|++++|.++++++|
T Consensus 99 ~~~~~--------------~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 135 (232)
T 1zyb_A 99 SLFGM--------------NT----NYASSYVAHTEVHTVCISKAFVLSDLFRYD 135 (232)
T ss_dssp GGSSS--------------CC----BCSSEEEESSCEEEEEEEHHHHHHTGGGSH
T ss_pred HHhCC--------------CC----CCceEEEEccceEEEEEEHHHHHHHhccCH
Confidence 98732 11 268999999999999999999999999993
No 32
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.41 E-value=2.5e-12 Score=129.04 Aligned_cols=106 Identities=22% Similarity=0.231 Sum_probs=91.4
Q ss_pred hhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhcc
Q 004064 601 RIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLE 675 (776)
Q Consensus 601 ~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~~ 675 (776)
.+++.++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++||+.+++..
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~-- 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE-- 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTST--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcC--
Confidence 356779999999999999999999999999999999999999999999986 455 6889999999999998742
Q ss_pred ccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHh
Q 004064 676 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFAR 724 (776)
Q Consensus 676 ~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~ 724 (776)
.+ ++.++++|+++|+++.|++++|.+++.++|+
T Consensus 80 ------------~~----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 112 (210)
T 3ryp_A 80 ------------GQ----ERSAWVRAKTACEVAEISYKKFRQLIQVNPD 112 (210)
T ss_dssp ------------TC----BCSSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred ------------CC----CceEEEEECCcEEEEEEcHHHHHHHHHHChH
Confidence 11 3689999999999999999999999999943
No 33
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.41 E-value=1.5e-13 Score=129.33 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRL 550 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~l 550 (776)
.|..|+||+++|+|||||||+.|.|..|++++++++++|++++|++++.+++.+........+.++..+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 38899999999999999999999999999999999999999999999999998876554443333322222333344556
Q ss_pred CHHHHHHHHHHHH
Q 004064 551 PEQLRRQVREAER 563 (776)
Q Consensus 551 p~~L~~rV~~y~~ 563 (776)
+++....++++.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666654
No 34
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.40 E-value=8.6e-13 Score=135.56 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=101.2
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhcc
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLE 675 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~ 675 (776)
+++++++|.+++++.++.++..++.+.|.+|++|+++|+.++++|+|.+|.|+++.++..+..+.+|++|||.+++.+
T Consensus 8 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~l~~~-- 85 (246)
T 3of1_A 8 SIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMYN-- 85 (246)
T ss_dssp HHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHHHHHT--
T ss_pred HHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhHHhcC--
Confidence 788999999999999999999999999999999999999999999999999999975557899999999999998742
Q ss_pred ccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 676 HSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 676 ~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
. ++.++++|.++|+++.|++++|.+++..+|
T Consensus 86 ------------~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 116 (246)
T 3of1_A 86 ------------S-----PRAATVVATSDCLLWALDRLTFRKILLGSS 116 (246)
T ss_dssp ------------C-----CCSSEEEESSCEEEEEEEHHHHHHTTTTTT
T ss_pred ------------C-----CCCcEEEECCCeEEEEEEhHHHHHHHHHhH
Confidence 1 478999999999999999999999999883
No 35
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.40 E-value=1.8e-12 Score=140.06 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=99.6
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc--eEEEcCCCCeeechhhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG--IAVCLSEGDACGEELLT 671 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g--~i~~l~~G~~fGe~~ll 671 (776)
+++++++|+.++++.++.|+..++.+.|.+|++|+++||.++++|||.+|.|+++. .+| .+..+.+|++|||.+++
T Consensus 14 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~ 93 (333)
T 4ava_A 14 DLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALL 93 (333)
T ss_dssp HHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHHH
T ss_pred HHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHhc
Confidence 68899999999999999999999999999999999999999999999999999986 344 78899999999999987
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 672 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 672 ~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
.+ . ++.++++|+++|+++.|++++|.+++ ++|
T Consensus 94 ~~--------------~-----~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p 125 (333)
T 4ava_A 94 RD--------------S-----PRSATVTTIEPLTGWTGGRGAFATMV-HIP 125 (333)
T ss_dssp HT--------------C-----BCSSEEEESSCEEEEEECHHHHHHHH-HST
T ss_pred CC--------------C-----CceEEEEEecCEEEEEEcHHHHHHHH-hCh
Confidence 42 1 57899999999999999999999999 883
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.39 E-value=3.6e-12 Score=134.81 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=102.8
Q ss_pred HHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhh
Q 004064 593 LFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLT 671 (776)
Q Consensus 593 ~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll 671 (776)
... +++++++|..++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++.++..+..+.+|++|||.+++
T Consensus 36 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l~ 115 (291)
T 2qcs_B 36 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALI 115 (291)
T ss_dssp HHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTCEECGGGGT
T ss_pred HHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCCccchHHHh
Confidence 344 8999999999999999999999999999999999999999999999999999999844488999999999999887
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHh
Q 004064 672 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFAR 724 (776)
Q Consensus 672 ~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~ 724 (776)
.+ . ++.++++|.++|+++.|++++|.+++..+|.
T Consensus 116 ~~--------------~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~ 149 (291)
T 2qcs_B 116 YG--------------T-----PRAATVKAKTNVKLWGIDRDSYRRILMGSTL 149 (291)
T ss_dssp CC--------------C-----BCSSEEEESSCEEEEEEEHHHHHHHHHHHHH
T ss_pred cC--------------C-----CCceEEEECCCEEEEEEEhHHHHHHHhhhHH
Confidence 32 1 4789999999999999999999999999943
No 37
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.39 E-value=4.9e-12 Score=126.54 Aligned_cols=104 Identities=26% Similarity=0.331 Sum_probs=89.9
Q ss_pred CCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhccccccc
Q 004064 606 MDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVN 680 (776)
Q Consensus 606 ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~~~~~~~ 680 (776)
|+++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++||+.+++.+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~------- 73 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK------- 73 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC--------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcC-------
Confidence 5889999999999999999999999999999999999999999985 455 7889999999999988732
Q ss_pred cccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHh
Q 004064 681 RDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFAR 724 (776)
Q Consensus 681 ~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~ 724 (776)
. ....++.++++|+++|+++.|++++|.++++++|.
T Consensus 74 -------~-~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 109 (207)
T 2oz6_A 74 -------E-GSEQERSAWVRAKVECEVAEISYAKFRELSQQDSE 109 (207)
T ss_dssp ------------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred -------C-CCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHH
Confidence 1 00002678999999999999999999999999943
No 38
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.37 E-value=2e-12 Score=119.14 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVK 529 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 529 (776)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.+|.+++.+.+..+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999876654
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.36 E-value=7.9e-12 Score=132.14 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=102.1
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc----eEEEcCCCCeeechh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG----IAVCLSEGDACGEEL 669 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g----~i~~l~~G~~fGe~~ 669 (776)
++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++. .+| .+..+.+|++|||.+
T Consensus 158 ~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ 237 (291)
T 2qcs_B 158 FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIA 237 (291)
T ss_dssp HHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGG
T ss_pred HHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHH
Confidence 67888999999999999999999999999999999999999999999999999985 233 688999999999999
Q ss_pred hhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhccC
Q 004064 670 LTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRS 728 (776)
Q Consensus 670 ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~~ 728 (776)
++.+ . ++.++++|.++|+++.|++++|.+++..+|++++.
T Consensus 238 ll~~--------------~-----~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~ 277 (291)
T 2qcs_B 238 LLMN--------------R-----PKAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 277 (291)
T ss_dssp GTCC--------------C-----CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTT
T ss_pred HcCC--------------C-----CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHH
Confidence 8732 1 47899999999999999999999999999655443
No 40
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.35 E-value=8.2e-12 Score=132.76 Aligned_cols=110 Identities=22% Similarity=0.324 Sum_probs=100.8
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEec---Cc---eEEEcCCCCeeechh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE---DG---IAVCLSEGDACGEEL 669 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~---~g---~i~~l~~G~~fGe~~ 669 (776)
++.++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++.. +| .+..+.+|++|||.+
T Consensus 158 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ 237 (299)
T 3shr_A 158 FLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKA 237 (299)
T ss_dssp HHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGG
T ss_pred HHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHH
Confidence 788899999999999999999999999999999999999999999999999999874 34 788999999999999
Q ss_pred hhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHh
Q 004064 670 LTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFAR 724 (776)
Q Consensus 670 ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~ 724 (776)
++.+ . ++.++++|.++|+++.|++++|.+++..+|+
T Consensus 238 ll~~--------------~-----~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~ 273 (299)
T 3shr_A 238 LQGE--------------D-----VRTANVIAAEAVTCLVIDRDSFKHLIGGLDD 273 (299)
T ss_dssp GSSS--------------E-----ECSSEEEESSSEEEEEEEHHHHHHHHTTCCC
T ss_pred HhCC--------------C-----CcceEEEECCCEEEEEEeHHHHHHHHccHHH
Confidence 8732 1 5789999999999999999999999999933
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.33 E-value=1.1e-11 Score=138.67 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=104.2
Q ss_pred HHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe-cCc---eEEEcCCCCee
Q 004064 591 RHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG---IAVCLSEGDAC 665 (776)
Q Consensus 591 ~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~-~~g---~i~~l~~G~~f 665 (776)
.+... +++++++|++++++.+..|+..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| .+..+.+|++|
T Consensus 140 ~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~f 219 (416)
T 3tnp_B 140 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF 219 (416)
T ss_dssp HHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEE
T ss_pred HHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEE
Confidence 33445 89999999999999999999999999999999999999999999999999999986 445 68899999999
Q ss_pred echhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 666 GEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 666 Ge~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
||.+++.+ . ++.++++|+++|+++.|++++|..++..+|..
T Consensus 220 Ge~all~~--------------~-----pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~ 260 (416)
T 3tnp_B 220 GELALMYN--------------T-----PKAATITATSPGALWGLDRVTFRRIIVKNNAK 260 (416)
T ss_dssp CGGGGTSC--------------C-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred eeHHHhcC--------------C-----CcccEEEEccCeEEEEEeehhhhhhhhcchhH
Confidence 99998742 2 47899999999999999999999999999543
No 42
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.33 E-value=1.1e-11 Score=129.26 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=89.6
Q ss_pred ccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhccccc
Q 004064 604 ALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSS 678 (776)
Q Consensus 604 ~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~~~~~ 678 (776)
..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| ++..+.+|++||+..++..
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~----- 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE----- 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTST-----
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCC-----
Confidence 458999999999999999999999999999999999999999999986 455 7889999999999998742
Q ss_pred cccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHh
Q 004064 679 VNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFAR 724 (776)
Q Consensus 679 ~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~ 724 (776)
.+ ++.++++|+++|+++.|++++|.+++..+|+
T Consensus 130 ---------~~----~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~ 162 (260)
T 3kcc_A 130 ---------GQ----ERSAWVRAKTACEVAEISYKKFRQLIQVNPD 162 (260)
T ss_dssp ---------TC----BCCSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred ---------CC----CCceEEEECCCeEEEEEcHHHHHHHHHHCHH
Confidence 11 3789999999999999999999999999943
No 43
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.33 E-value=3.8e-12 Score=128.58 Aligned_cols=106 Identities=10% Similarity=0.045 Sum_probs=87.7
Q ss_pred hhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhc
Q 004064 600 VRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCL 674 (776)
Q Consensus 600 ~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~ 674 (776)
-|+|...++...+.+...++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++||+..++.+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~- 82 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS- 82 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC-
Confidence 4778888999999999999999999999999999999999999999999986 456 6889999999999998731
Q ss_pred cccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 675 EHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 675 ~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
+ .++.++++|+++|+++.|++++|.++++++|
T Consensus 83 ----------------~-~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p 114 (213)
T 1o5l_A 83 ----------------E-PRFPVNVVAGENSKILSIPKEVFLDLLMKDR 114 (213)
T ss_dssp ----------------S-CBCSSEEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred ----------------C-CCceEEEEEccceEEEEEeHHHHHHHHHHCH
Confidence 1 1468999999999999999999999999993
No 44
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.32 E-value=6.1e-12 Score=127.41 Aligned_cols=104 Identities=8% Similarity=0.194 Sum_probs=94.8
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe-cCc---eEEEcCCCCeeechhhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG---IAVCLSEGDACGEELLT 671 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~-~~g---~i~~l~~G~~fGe~~ll 671 (776)
+++++++|..++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++||+ -
T Consensus 5 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~---~ 81 (220)
T 2fmy_A 5 RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT---H 81 (220)
T ss_dssp CSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---C
T ss_pred hhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---c
Confidence 67889999999999999999999999999999999999999999999999999954 455 6889999999998 1
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 672 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 672 ~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+.++++|+++|+++.|++++|.++++++|++
T Consensus 82 -----------------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 112 (220)
T 2fmy_A 82 -----------------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAF 112 (220)
T ss_dssp -----------------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHH
T ss_pred -----------------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHH
Confidence 3588999999999999999999999999433
No 45
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.31 E-value=1.5e-11 Score=139.22 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=112.1
Q ss_pred CChhhHHHHHHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---
Q 004064 581 LPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG--- 654 (776)
Q Consensus 581 Lp~~Lr~eI~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g--- 654 (776)
.|+..|.+...+... .++++++|.+++++.++.|+..++.+.|.+|++|+++||.++.+|+|.+|.|+++. .+|
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 567777777777767 99999999999999999999999999999999999999999999999999999986 333
Q ss_pred --eEEEcCCCCeeechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhc
Q 004064 655 --IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFL 726 (776)
Q Consensus 655 --~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l 726 (776)
.+..+.+|++||+.+ +.+ . ++.++++|.++|+++.|++++|.+++.++|.+.
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~--------------~-----~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDN--------------T-----PRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGT--------------C-----BCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred ceEEEEccCCCCcchhh-hCC--------------C-----CccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 688999999999988 632 1 478999999999999999999999999997653
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.31 E-value=5.2e-12 Score=139.57 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=103.5
Q ss_pred HHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhh
Q 004064 592 HLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELL 670 (776)
Q Consensus 592 ~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~l 670 (776)
+... ++.++++|++++++.++.|+..++.+.|.+|++|+++|+.++.+|+|.+|.|+++..+..+..+.+|++|||.++
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~al 205 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELAL 205 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCCBCGGGG
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEEchHH
Confidence 3344 899999999999999999999999999999999999999999999999999999985558889999999999998
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhH
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFA 723 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~ 723 (776)
+.+ . ++.++++|+++|+++.|++++|.+++..+|
T Consensus 206 l~~--------------~-----~r~atv~A~~~~~l~~i~~~~f~~ll~~~~ 239 (381)
T 4din_B 206 IYG--------------T-----PRAATVKAKTDLKLWGIDRDSYRRILMGST 239 (381)
T ss_dssp TSC--------------C-----BCSSEEEESSSCEEEEEEHHHHHHHHHHHH
T ss_pred hcC--------------C-----CcceEEEECCCEEEEEEchHHHHHhhhhhh
Confidence 742 2 478999999999999999999999999993
No 47
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.29 E-value=7.1e-12 Score=127.23 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=94.0
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe-cCc---eEEEcCCCCeeechhhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG-EDG---IAVCLSEGDACGEELLT 671 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~-~~g---~i~~l~~G~~fGe~~ll 671 (776)
+++++++|..++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+.+|++|| -
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----~ 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----M 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE----S
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec----C
Confidence 46788999999999999999999999999999999999999999999999999963 456 688999999999 1
Q ss_pred hhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 672 WCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 672 ~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
++.++++|+++|+++.|++++|.++++.+|.+
T Consensus 77 ----------------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 108 (222)
T 1ft9_A 77 ----------------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSM 108 (222)
T ss_dssp ----------------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGG
T ss_pred ----------------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHH
Confidence 36789999999999999999999999999444
No 48
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.27 E-value=3.9e-11 Score=135.93 Aligned_cols=111 Identities=12% Similarity=0.128 Sum_probs=100.6
Q ss_pred hhhhhhhcccCCHHHHHHHHhHcee-eEecCCCEEEccCCccCEEEEEEeeEEEEEecCc-eEEEcCCCCeeechhhhhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQ-KTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-IAVCLSEGDACGEELLTWC 673 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~-~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g-~i~~l~~G~~fGe~~ll~~ 673 (776)
++.++++|..++++.++.++..+.. +.|.+|++|+++||.++.+|||.+|.|+++..+. .+..+.+|++|||.+++.+
T Consensus 338 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~ 417 (469)
T 1o7f_A 338 ELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND 417 (469)
T ss_dssp HHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCC
T ss_pred HHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcC
Confidence 8899999999999999999999985 4899999999999999999999999999987544 8999999999999998742
Q ss_pred ccccccccccccccCCCCcccceeEEEEcC-eEEEEEeeHHHHHHHHHHhHhh
Q 004064 674 LEHSSVNRDAKRYRIPGQRLLCNRTVRCLT-NVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 674 ~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt-~~el~~L~~~df~~ll~~~~~~ 725 (776)
. ++.++++|++ +|+++.|++++|.+++..+|.+
T Consensus 418 --------------~-----~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~ 451 (469)
T 1o7f_A 418 --------------A-----PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 451 (469)
T ss_dssp --------------S-----CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC
T ss_pred --------------C-----CceEEEEEecCCEEEEEEcHHHHHHHHHHChHH
Confidence 1 4789999998 7999999999999999999443
No 49
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.26 E-value=1.8e-11 Score=115.46 Aligned_cols=89 Identities=11% Similarity=0.212 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR-LDMSLRRRDVEQWMRHRR 549 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~v~~ym~~~~ 549 (776)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|+++++++++.+++.+.+...+. .++.++.+.....+-.++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999776554332 333333333333332222
Q ss_pred CCHHHHHHHHH
Q 004064 550 LPEQLRRQVRE 560 (776)
Q Consensus 550 lp~~L~~rV~~ 560 (776)
+ .++..|+.+
T Consensus 120 ~-~~l~~~l~~ 129 (139)
T 3eff_K 120 T-RALHERFDR 129 (139)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 2 344444443
No 50
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.26 E-value=3e-11 Score=135.02 Aligned_cols=113 Identities=12% Similarity=0.225 Sum_probs=101.3
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEec--C------c---eEEEcCCCCe
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--D------G---IAVCLSEGDA 664 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~--~------g---~i~~l~~G~~ 664 (776)
++.++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. + | .+..+.+|++
T Consensus 268 ~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~ 347 (416)
T 3tnp_B 268 FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQY 347 (416)
T ss_dssp SGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCE
T ss_pred HHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCE
Confidence 778899999999999999999999999999999999999999999999999999862 2 4 6899999999
Q ss_pred eechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhcc
Q 004064 665 CGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLR 727 (776)
Q Consensus 665 fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~ 727 (776)
|||.+++.+ . ++.++|+|+++|+++.|++++|.+++..+|++++
T Consensus 348 fGE~all~~--------------~-----~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~ 391 (416)
T 3tnp_B 348 FGELALVTN--------------K-----PRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK 391 (416)
T ss_dssp ESGGGGTCC--------------S-----CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred ecHHHHhCC--------------C-----CceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHH
Confidence 999999832 1 4789999999999999999999999999955443
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.26 E-value=9.5e-12 Score=137.50 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=101.8
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEec--Cc----eEEEcCCCCeeechh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--DG----IAVCLSEGDACGEEL 669 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~--~g----~i~~l~~G~~fGe~~ 669 (776)
++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. +| .+..+.+|++|||.+
T Consensus 249 ~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~a 328 (381)
T 4din_B 249 FLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIA 328 (381)
T ss_dssp HHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTG
T ss_pred HhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHH
Confidence 778899999999999999999999999999999999999999999999999999873 22 588999999999999
Q ss_pred hhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhcc
Q 004064 670 LTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLR 727 (776)
Q Consensus 670 ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~ 727 (776)
++.+ . ++.++++|.++|+++.|++++|.+++..+|++++
T Consensus 329 ll~~--------------~-----~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~ 367 (381)
T 4din_B 329 LLLN--------------R-----PRAATVVARGPLKCVKLDRPRFERVLGPCSEILK 367 (381)
T ss_dssp GGSC--------------C-----BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred HhCC--------------C-----CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence 9842 1 5789999999999999999999999999954443
No 52
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.21 E-value=3.3e-11 Score=124.65 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=94.1
Q ss_pred hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhh
Q 004064 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELL 670 (776)
Q Consensus 596 ~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~l 670 (776)
++.+...+..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| ++..+.+|++||+ +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 44555556889999999999999999999999999999999999999999999986 455 7889999999999 4
Q ss_pred hhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 671 TWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 671 l~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+. + . +.++++|+++|+++.|++++|.+++.++|++
T Consensus 88 l~-----------------~-~--~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 122 (250)
T 3e6c_C 88 YP-----------------T-G--NNIYATAMEPTRTCWFSEKSLRTVFRTDEDM 122 (250)
T ss_dssp SC-----------------C-S--CCEEEEESSSEEEEEECHHHHHHHHHHCTHH
T ss_pred cC-----------------C-C--CceEEEEcccEEEEEEcHHHHHHHHHHCHHH
Confidence 32 1 1 5789999999999999999999999999433
No 53
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.19 E-value=8.9e-11 Score=138.96 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=111.1
Q ss_pred hHHHhcCChhhHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHce-eeEecCCCEEEccCCccCEEEEEEeeEEEEEecC
Q 004064 575 DMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLR-QKTYISGSKILYRGGLIEKMVFIVRGKMESIGED 653 (776)
Q Consensus 575 ~~il~~Lp~~Lr~eI~~~~~~~l~~~~~F~~ls~~~l~~L~~~l~-~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~ 653 (776)
..+|...|..-..+-...+..++.++++|.+++++.++.++..+. .+.|.+|++|+++||.++.+|||.+|.|+++..+
T Consensus 12 r~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g 91 (694)
T 3cf6_E 12 RMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 91 (694)
T ss_dssp HHHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred HHHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence 456655555444343333333889999999999999999999998 7899999999999999999999999999999754
Q ss_pred c-eEEEcCCCCeeechhhhhhccccccccccccccCCCCcccceeEEEEcC-eEEEEEeeHHHHHHHHHHhHhh
Q 004064 654 G-IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLT-NVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 654 g-~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt-~~el~~L~~~df~~ll~~~~~~ 725 (776)
. ++..+.+|++|||.+++.+ . ++.++++|++ +|+++.|++++|.++++++|.+
T Consensus 92 ~~il~~l~~Gd~fGe~al~~~-----------------~--~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 92 KGVVCTLHEGDDFGKLALVND-----------------A--PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp TEEEEEEETTCEECHHHHHHT-----------------C--BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred CEEEEEeCCCCEeehHHHhCC-----------------C--CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 4 8899999999999988742 1 4789999999 5999999999999999999755
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=1.4e-10 Score=143.67 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=99.9
Q ss_pred HhhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEec--C----c-eEEEcCCCCeeec
Q 004064 595 KFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGE--D----G-IAVCLSEGDACGE 667 (776)
Q Consensus 595 ~~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~--~----g-~i~~l~~G~~fGe 667 (776)
..|+++.+|+++++..+.+|+..|..+.|.+|++|+++||.++++|+|.+|.|+++.. + + .+..+.+|+.|||
T Consensus 42 ~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE 121 (999)
T 4f7z_A 42 TRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE 121 (999)
T ss_dssp HHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG
T ss_pred HHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh
Confidence 3789999999999999999999999999999999999999999999999999999863 1 1 6889999999999
Q ss_pred hhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 668 ELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 668 ~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
+++.+ . +|+++++|.++|+++.|++++|..++..||+.
T Consensus 122 -all~n--------------~-----pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 122 -SILDN--------------T-----PRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp -GGGGT--------------C-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred -hhccC--------------C-----CcceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 66532 2 48999999999999999999999999999643
No 55
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.17 E-value=1.8e-10 Score=118.77 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=86.9
Q ss_pred HHHHHHHHhHce---eeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhcccccc
Q 004064 608 EPILDAICERLR---QKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSV 679 (776)
Q Consensus 608 ~~~l~~L~~~l~---~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~~~~~~ 679 (776)
+++++.|+.... .+.|.+|++|+++|+.++.+|||.+|.|+++. .+| ++..+.+|++||+.+++.+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~------ 103 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTG------ 103 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSS------
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCC------
Confidence 667888888888 99999999999999999999999999999986 455 7889999999999988742
Q ss_pred ccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhh
Q 004064 680 NRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 680 ~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~ 725 (776)
.|. ++.++++|+++|+++.|++++|.+++.++|++
T Consensus 104 --------~~~---~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 138 (243)
T 3la7_A 104 --------NKS---DRFYHAVAFTPVELLSAPIEQVEQALKENPEL 138 (243)
T ss_dssp --------CCS---BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHH
T ss_pred --------CCC---cceEEEEEccceEEEEEcHHHHHHHHHHCHHH
Confidence 111 24589999999999999999999999999443
No 56
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.13 E-value=2e-10 Score=121.74 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhhccccCC-Ccc-ccchhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 469 ITRYVYSLFWGFQQISTLAGN-QTP-SYFVGE----VLFTMAIIGVGLLLFAFLIGNMQNFLQALVK 529 (776)
Q Consensus 469 ~~~Yl~slYwa~~t~tTvGyg-di~-~~~~~E----~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 529 (776)
+..+..|+||+++++||+||| |+. |.+... ..+.+++++.|.++.+..+|.+.+-+....+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999 874 554433 7888999999999999999999888765543
No 57
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.13 E-value=5.3e-10 Score=114.72 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHh--HceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhcccc
Q 004064 605 LMDEPILDAICE--RLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHS 677 (776)
Q Consensus 605 ~ls~~~l~~L~~--~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~~~~ 677 (776)
+++++.++.+.. .++.+.|.+|++|+++|+.++++|||.+|.|+++. .+| ++..+ +|++||+.+++.+
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~---- 77 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDT---- 77 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTT----
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcC----
Confidence 578889998885 48999999999999999999999999999999986 455 66777 9999999988742
Q ss_pred ccccccccccCCCCccc-ceeEEEEc-CeEEEEEeeHHHHHHHHHHhHhh
Q 004064 678 SVNRDAKRYRIPGQRLL-CNRTVRCL-TNVEAFSLRAADIEEVTSLFARF 725 (776)
Q Consensus 678 ~~~~~~~k~~~p~~~~~-~~~tv~Al-t~~el~~L~~~df~~ll~~~~~~ 725 (776)
.| + +.+++.|+ ++|+++.|++++|.+++.++|++
T Consensus 78 ----------~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~ 113 (238)
T 2bgc_A 78 ----------ET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTH 113 (238)
T ss_dssp ----------CC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHH
T ss_pred ----------CC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHH
Confidence 11 1 25778887 59999999999999999999444
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.13 E-value=3.7e-10 Score=139.86 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=105.6
Q ss_pred HHHhcCChhhHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHceeeE-ecCCCEEEccCCccCEEEEEEeeEEEEEe-cC
Q 004064 576 MLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKT-YISGSKILYRGGLIEKMVFIVRGKMESIG-ED 653 (776)
Q Consensus 576 ~il~~Lp~~Lr~eI~~~~~~~l~~~~~F~~ls~~~l~~L~~~l~~~~-y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~-~~ 653 (776)
.++++.|..-..+....+...+.+++.|++++...++.|+..+.... +..|++|+++||.++.+|||.+|.|+++. ++
T Consensus 318 ~~l~k~~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~ 397 (999)
T 4f7z_A 318 MILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK 397 (999)
T ss_dssp HHHTSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTT
T ss_pred hhhcCCcccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCC
Confidence 34444444433333333333889999999999999999999998665 57799999999999999999999999987 45
Q ss_pred ceEEEcCCCCeeechhhhhhccccccccccccccCCCCcccceeEEEEcC-eEEEEEeeHHHHHHHHHHh
Q 004064 654 GIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLT-NVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 654 g~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt-~~el~~L~~~df~~ll~~~ 722 (776)
+.+..+++||+|||.+++.+ . +|.+||+|.+ +|++++|+++||.+++.+-
T Consensus 398 ~~v~~L~~Gd~FGElALL~~--------------~-----PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 398 GVVCTLHEGDDFGKLALVND--------------A-----PRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp EEEEEEETTCEECGGGGTCS--------------C-----BCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cceEEecCCCcccchhhccC--------------C-----CeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 58999999999999999842 2 5899999988 5999999999999999764
No 59
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.06 E-value=7.7e-10 Score=100.45 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR 531 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~ 531 (776)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.++......
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999999999885554433
No 60
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.04 E-value=6.4e-11 Score=105.70 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVK 529 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 529 (776)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.+++++++.+++.+.+..+
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999998866544
No 61
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.98 E-value=2.6e-09 Score=94.06 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 472 YVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQAL 527 (776)
Q Consensus 472 Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 527 (776)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+.+++++++.+++.++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78899999999999999999999999999999999999999999999999987543
No 62
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.91 E-value=5.4e-09 Score=89.03 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFL 524 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il 524 (776)
.|..|+||++.|++|+||||+.|.+..+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999999999999999999999999999875
No 63
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.85 E-value=6e-09 Score=103.29 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=67.7
Q ss_pred eEecCCCEEEccCCccCEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhccccccccccccccCCCCcccc
Q 004064 621 KTYISGSKILYRGGLIEKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLC 695 (776)
Q Consensus 621 ~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~ 695 (776)
+.|.+|++|+++|+.++.+|||.+|.|+++. .+| .+..+.+|++||+ +++.+ . ++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~-----------------~--~~ 61 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEG-----------------K--AY 61 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTC-----------------S--BC
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCC-----------------C--Cc
Confidence 5799999999999999999999999999986 455 6889999999999 88732 1 47
Q ss_pred eeEEEEcCeEEEEEeeHHHHH
Q 004064 696 NRTVRCLTNVEAFSLRAADIE 716 (776)
Q Consensus 696 ~~tv~Alt~~el~~L~~~df~ 716 (776)
.++++|+++|+++.|++++|.
T Consensus 62 ~~~~~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 62 RYTAEAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp SSEEEESSSEEEEEECGGGCC
T ss_pred eeEEEECCcEEEEEEcHHHcC
Confidence 899999999999999999987
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.76 E-value=7.6e-10 Score=107.53 Aligned_cols=63 Identities=11% Similarity=0.284 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLD 533 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~ 533 (776)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++++++|.+++.+.....++.+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999999999999999999999999988766554443
No 65
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.76 E-value=1.4e-08 Score=101.20 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=67.8
Q ss_pred HhHceeeEecCCCEEEccCCcc--CEEEEEEeeEEEEEe--cCc---eEEEcCCCCeeechhhhhhcccccccccccccc
Q 004064 615 CERLRQKTYISGSKILYRGGLI--EKMVFIVRGKMESIG--EDG---IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYR 687 (776)
Q Consensus 615 ~~~l~~~~y~~ge~I~~~Ge~~--~~lyfI~~G~V~v~~--~~g---~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~ 687 (776)
...++.+.|.+|++|+++|+.+ +.+|||.+|.|+++. .+| .+..+.+|++||+ +++.+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~-------------- 66 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFG-------------- 66 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHT--------------
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCC--------------
Confidence 4567889999999999999999 999999999999986 455 6889999999999 76632
Q ss_pred CCCCcccceeEEEEcCeEEEEEeeHHHHH
Q 004064 688 IPGQRLLCNRTVRCLTNVEAFSLRAADIE 716 (776)
Q Consensus 688 ~p~~~~~~~~tv~Alt~~el~~L~~~df~ 716 (776)
. ++.++++|+++|+++.| +++|.
T Consensus 67 ---~--~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 67 ---Q--ERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp ---C--CBCSEEEESSCEEEEEC-CSSCC
T ss_pred ---C--CcceEEEEcccEEEEEE-hHhcC
Confidence 1 47899999999999999 88875
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.65 E-value=5.5e-08 Score=103.16 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQ 525 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~ 525 (776)
.|..|+||++.|+|||||||+.|.+..+++++++.+++|++++|+++|.+.+.+.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999998887764
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.56 E-value=3.9e-08 Score=105.41 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQAL 527 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 527 (776)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999998877544
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.52 E-value=2e-07 Score=98.56 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQAL 527 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 527 (776)
.|..|+||+++|+|||||||+.|.|..+++++++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988654
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.46 E-value=4e-07 Score=97.30 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQAL 527 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 527 (776)
.|..|+||+++|+|||||||+.|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999877543
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.30 E-value=1.4e-06 Score=100.89 Aligned_cols=54 Identities=11% Similarity=0.299 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGN-MQNFL 524 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~-i~~il 524 (776)
.|..|+||+++|+||+||||++|.+..+++++++++++|++++++.++. +.+++
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999998 55544
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.30 E-value=1.6e-06 Score=92.68 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhccccCCCcccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSY--FVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQAL 527 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~--~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 527 (776)
.+..++||++.|+|||||||+.|+ +...++++++.+++|+++.|+.+|.+.+-+..-
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 356799999999999999999996 578899999999999999999999887766443
No 72
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.24 E-value=3.5e-06 Score=85.94 Aligned_cols=75 Identities=8% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEEcCCccccCCCeEe
Q 004064 205 QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELV 284 (776)
Q Consensus 205 ~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~~~~~~~~~~g~lV 284 (776)
.++.++.++.+.+++..-+.. . ..+......+..++.++-++|.+|+++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~----------~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-Y----------ELDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-S----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHcc-C----------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C---
Confidence 567777777777766654421 0 01122345678899999999999999998542 1
Q ss_pred eCHHHHHHHHHhh-hHHHHHHhhcCH
Q 004064 285 DHPKKIALNYLRG-YFFIDFFVALPL 309 (776)
Q Consensus 285 ~d~k~Ia~~Ylk~-~F~~Dlis~lP~ 309 (776)
-.++|+++ |-++|+++++|.
T Consensus 68 -----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 -----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ------------CHHHHHHHHHHHHT
T ss_pred -----chhHHhcCCcHHHHHHHHHHH
Confidence 04679988 889998776643
No 73
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.21 E-value=4.9e-06 Score=89.09 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhccccCCCcccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSY--FVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQA 526 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~--~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~ 526 (776)
.+..++||++.|+||+||||+.|+ +...++++.+.+++|+++.|+.+|.+.+-+..
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999999999999764 78899999999999999999999987776543
No 74
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.19 E-value=5.9e-07 Score=94.95 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEV------LFTMAIIGVGLLLFAFLIGNMQNFLQALVKRR 531 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~------i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~ 531 (776)
.|+.|+||++.|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+..+.+++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999988876 59999999999999999999999887665433
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.16 E-value=2.8e-06 Score=88.51 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQA 526 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~ 526 (776)
.|..|+||+++|+|||||||+.|.+...++++++.+++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999998876543
No 76
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.08 E-value=2.6e-06 Score=88.68 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhhccccCCCccccchh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 472 YVYSLFWGFQQISTLAGNQTPSYFVG-------EVLFTMAIIGVGLLLFAFLIGNMQNFLQAL 527 (776)
Q Consensus 472 Yl~slYwa~~t~tTvGygdi~~~~~~-------E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 527 (776)
|+.|+||++.|+|||||||+.|.+.. .++++++++++|+.+++++++.+.+++..-
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998774 499999999999999999999999877543
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.88 E-value=9.9e-07 Score=95.33 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 472 YVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALV 528 (776)
Q Consensus 472 Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~ 528 (776)
|..|+||++.|+||+||||+.|.+..+++++++++++|+++++++++.+.+.+.+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999998876543
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.75 E-value=4.5e-05 Score=72.00 Aligned_cols=78 Identities=8% Similarity=0.099 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEEcCCccccCCCeEe
Q 004064 205 QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELV 284 (776)
Q Consensus 205 ~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~~~~~~~~~~g~lV 284 (776)
.|+.++.++.+.+++++-+..... .+.+....+..++.++-++|.+|.++++..+-
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~----------i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~-------------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHh----------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence 478888777777777666654432 11123456788999999999999999996653
Q ss_pred eCHHHHHHHHHhhhHHHHHHhhcCHHHH
Q 004064 285 DHPKKIALNYLRGYFFIDFFVALPLPQI 312 (776)
Q Consensus 285 ~d~k~Ia~~Ylk~~F~~Dlis~lP~~~i 312 (776)
+ .++|+++ -++|+++++|+...
T Consensus 78 -~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 78 -D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 1 4689987 68999999999644
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.47 E-value=0.00011 Score=68.25 Aligned_cols=79 Identities=8% Similarity=0.089 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEEcCCccccCCCeE
Q 004064 204 QQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGEL 283 (776)
Q Consensus 204 ~~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~~~~~~~~~~g~l 283 (776)
+.++.+++++.+.+++..-+..... .+......+..+|.++-++|.+|+++++..+- +
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~----------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~-~----------- 63 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG-D----------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC----------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-----------
Confidence 3467777777777766655532211 11223456888999999999999999996532 0
Q ss_pred eeCHHHHHHHHHhhhHHHHHHhhcCHHHH
Q 004064 284 VDHPKKIALNYLRGYFFIDFFVALPLPQI 312 (776)
Q Consensus 284 V~d~k~Ia~~Ylk~~F~~Dlis~lP~~~i 312 (776)
.++|++ |-++|+++++|+..-
T Consensus 64 -------~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 64 -------PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp -------TTTTTT-TCGGGTGGGSCHHHH
T ss_pred -------HHHHHH-HHHHHHHHHHHHHHH
Confidence 357899 999999999998543
No 80
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=62.91 E-value=6 Score=25.55 Aligned_cols=19 Identities=37% Similarity=0.273 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 004064 743 RCRAAIVIQVAWRYRKKRL 761 (776)
Q Consensus 743 ~~~a~~~iq~~~~~~~~r~ 761 (776)
.+.++..||+|||++..+.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3578999999999998764
No 81
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=61.79 E-value=19 Score=31.79 Aligned_cols=46 Identities=15% Similarity=0.318 Sum_probs=35.7
Q ss_pred eeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 619 RQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....+.||..+-.. ...+++++|++|++++.. +|....+.+||.+-
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-~g~~~~l~~GD~v~ 88 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVST-DGETVTAGPGEIVY 88 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-TTEEEEECTTCEEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-CCEEEEECCCCEEE
Confidence 34567788766443 367899999999999987 56677899999875
No 82
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=61.55 E-value=7.7 Score=25.91 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 004064 743 RCRAAIVIQVAWRYRKKRLN 762 (776)
Q Consensus 743 ~~~a~~~iq~~~~~~~~r~~ 762 (776)
.++++..||+|||++.-|..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999977643
No 83
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=57.90 E-value=48 Score=28.59 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=37.0
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-...+++++|.+|++++..++ ....+.+||.+=
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~ 85 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDG-AQRRLHQGDLLY 85 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETT-EEEEECTTEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECC-EEEEECCCCEEE
Confidence 445678889887665555678999999999988744 467899999865
No 84
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=57.62 E-value=26 Score=29.90 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=36.4
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+-...+.||+.-.. ....++++|++|.+.+..++|....+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCCEEE
Confidence 34566788876544 346789999999999988657778899999875
No 85
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=57.29 E-value=14 Score=32.24 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=36.4
Q ss_pred ceeeEecCCCEEEccCCc-cCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGL-IEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~-~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-.. ..++++|++|.+++...+|....+.+||.+=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEE
Confidence 445678888887544444 3679999999999887566777899999764
No 86
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=55.46 E-value=44 Score=32.87 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=53.0
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhccccccccccccccCCCCccccee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNR 697 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~ 697 (776)
+....+.||+.+-..-.+.+.+++|++|.+++..+ |....+.+||++=- |.. ...
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~-~~~~~l~~Gd~~~~---------------------p~~---~~H 93 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE-NNKKTISNGDFLEI---------------------TAN---HNY 93 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES-SCEEEEETTEEEEE---------------------CSS---CCE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC-CEEEEECCCCEEEE---------------------CCC---CCE
Confidence 45667899999987777889999999999999875 45578999987542 221 346
Q ss_pred EEEEcCeEEEEEe
Q 004064 698 TVRCLTNVEAFSL 710 (776)
Q Consensus 698 tv~Alt~~el~~L 710 (776)
.++|.+++.++.+
T Consensus 94 ~~~a~~~~~~l~i 106 (227)
T 3rns_A 94 SIEARDNLKLIEI 106 (227)
T ss_dssp EEEESSSEEEEEE
T ss_pred EEEECCCcEEEEE
Confidence 7889999999877
No 87
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=53.98 E-value=10 Score=31.88 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=35.4
Q ss_pred eeeEecCCCEEEccCCcc-CEEEEEEeeEEEEEecCc-eEEEcCCCCeeec
Q 004064 619 RQKTYISGSKILYRGGLI-EKMVFIVRGKMESIGEDG-IAVCLSEGDACGE 667 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~~-~~lyfI~~G~V~v~~~~g-~i~~l~~G~~fGe 667 (776)
....+.||...-..-... +.+++|++|.+++..++| ....+.+||.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEe
Confidence 445677887652222233 359999999999988777 6789999998753
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=52.01 E-value=68 Score=27.15 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=34.7
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-....++++|++|.+++.. +|....+.+||.+=
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ 83 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-DGVIKVLTAGDSFF 83 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-TTEEEEECTTCEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-CCEEEEeCCCCEEE
Confidence 4455678887753333336789999999999876 45567899999854
No 89
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=51.74 E-value=15 Score=32.71 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=34.5
Q ss_pred eEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 621 KTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 621 ~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....||..-....+ .+++++|++|.+.+..++|....+.+||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCCEEE
Confidence 44566766554332 3789999999999998778778899999976
No 90
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=49.49 E-value=87 Score=26.38 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=35.0
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-....++++|.+|.+.+..+ |....+.+||.+=
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~-~~~~~l~~Gd~~~ 89 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID-QETYRVAEGQTIV 89 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEET-TEEEEEETTCEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC-CEEEEECCCCEEE
Confidence 34556788887644333456899999999998764 4557899999874
No 91
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=49.25 E-value=17 Score=34.49 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=35.3
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDAC 665 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~f 665 (776)
+....+.||...-.--....+.++|++|++++..++|....+.+||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE
Confidence 445567777654332333456889999999998876777889999998
No 92
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=47.36 E-value=33 Score=29.29 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=33.4
Q ss_pred eeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 620 QKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 620 ~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
...+.+|..+-.......++++|++|.+++..+ +....+.+||.+=
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~-~~~~~l~~Gd~i~ 87 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITFD-DQKIDLVPEDVLM 87 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEET-TEEEEECTTCEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEEC-CEEEEecCCCEEE
Confidence 344567766544444567899999999998764 4567899999764
No 93
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=46.65 E-value=22 Score=42.08 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004064 471 RYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQA 526 (776)
Q Consensus 471 ~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~ 526 (776)
....++++++.+++..| ++..|.+...+++.++++++++++.+...+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999988777 56788899999999999999999999999999999874
No 94
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=44.63 E-value=14 Score=32.72 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=34.6
Q ss_pred EecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeec
Q 004064 622 TYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 667 (776)
Q Consensus 622 ~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe 667 (776)
...||..-.... ..+++++|++|.+.+..++|....+.+||.|--
T Consensus 48 e~tPG~~~~~~~-~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAGR-DLEETFVVVEGEALYSQADADPVKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECCC-SEEEEEEEEECCEEEEETTCCCEEECTTEEEEE
T ss_pred ecCCceeECeeC-CCcEEEEEEEeEEEEEeCCCeEEEECCCCEEEE
Confidence 455665555443 335899999999999988898889999999864
No 95
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=42.36 E-value=49 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=35.2
Q ss_pred ceeeEecCCCEEEcc--CCc-cCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYR--GGL-IEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~--Ge~-~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-.. -.. ..++++|.+|.+.+..+ +....+.+||.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~-~~~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD-GHTQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET-TEEEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC-CEEEEeCCCCEEE
Confidence 344568888877544 333 67899999999998764 4567789998864
No 96
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=40.06 E-value=59 Score=26.56 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=34.3
Q ss_pred ceeeEecCCCEEEccCCc-cCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGL-IEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~-~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-.. .+++++|.+|.+.+..+ +....+.+||.+=
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~-~~~~~l~~Gd~~~ 78 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG-EEEALLAPGMAAF 78 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET-TEEEEECTTCEEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC-CEEEEeCCCCEEE
Confidence 344567888877433323 35799999999998764 4567899999864
No 97
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=39.48 E-value=47 Score=27.75 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=33.7
Q ss_pred eeeEecCCCEEEccCCc-cCEE-EEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 619 RQKTYISGSKILYRGGL-IEKM-VFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~-~~~l-yfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....+.+|..+-..-.. ..++ ++|.+|.+.+..++|....+.+||.+=
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ 85 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLV 85 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEE
Confidence 34567788876433222 2466 899999999887646667899999764
No 98
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=39.45 E-value=52 Score=28.48 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=35.7
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-....++++|++|.+++..++ ....+.+||.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGE-ETRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETT-EEEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECC-EEEEeCCCCEEE
Confidence 445678888877544444578999999999988744 557889999864
No 99
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=39.41 E-value=40 Score=33.17 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=32.6
Q ss_pred EecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 622 TYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 622 ~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
.+.||..+=.--...+++|+|++|.++...+++....+.+|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEEE
Confidence 344454432223456789999999999988777778899999864
No 100
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=36.67 E-value=36 Score=29.18 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=31.6
Q ss_pred eeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 620 QKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 620 ~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
...+.||..+-..-....++++|.+|.+.+..++.....+.+||.+=
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVY 77 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEEE
Confidence 34566666542222345679999999999887655443789999864
No 101
>3of6_D PRE T-cell antigen receptor alpha; IG fold, immune system; HET: NAG; 2.80A {Homo sapiens}
Probab=35.80 E-value=12 Score=32.18 Aligned_cols=39 Identities=38% Similarity=0.475 Sum_probs=29.4
Q ss_pred CccceeeeecCCCCCCCCCcccccccCCCC--ccCCCccccccc
Q 004064 35 TRSASMSITMNSTDSFEPEANLVGLTGPLR--NERRTQFLQMSG 76 (776)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 76 (776)
|.=|-+|.|-..++.+| .||-||||=. ..|.|+-.|.||
T Consensus 75 tslaqLSlpsEelaaWe---~LVCHtgPg~g~~~~sTqPlqLsg 115 (130)
T 3of6_D 75 TNLAHLSLPSEELASWE---PLVCHTGPGAEGHSRSTQPMHLSG 115 (130)
T ss_dssp EEEEEEEEEGGGGGTSC---SBEEEECC----CCEECCCBCCC-
T ss_pred eeeeeecCCHHHhhccc---ceeEecCCCCCCCCCccCceEecC
Confidence 55678999999889998 7999999976 445677777776
No 102
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=34.30 E-value=43 Score=30.09 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=32.4
Q ss_pred eeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 620 QKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 620 ~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
...+.||..-.. ...+++++|++|.+++..+ |....+.+||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~-g~~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE-GETMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET-TEEEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC-CEEEEECCCcEEE
Confidence 455777843222 2367899999999998875 6666899999876
No 103
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=34.14 E-value=43 Score=31.82 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=34.0
Q ss_pred eeEecCCCEEEc---cCCccCEEEEEEeeEEEEEecCc---eEEEcCCCCeee
Q 004064 620 QKTYISGSKILY---RGGLIEKMVFIVRGKMESIGEDG---IAVCLSEGDACG 666 (776)
Q Consensus 620 ~~~y~~ge~I~~---~Ge~~~~lyfI~~G~V~v~~~~g---~i~~l~~G~~fG 666 (776)
...+.||...-. .....+++++|++|.+++...++ ....+.+||.+=
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEE
Confidence 345677765431 22344689999999999987653 778999999875
No 104
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=34.02 E-value=61 Score=29.34 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=34.9
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..--...++++|.+|.+.+..++.....+.+||++=
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ 98 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVE 98 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCEEE
Confidence 3455677887764333344789999999999887554436789999875
No 105
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=33.93 E-value=31 Score=37.32 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=39.0
Q ss_pred eeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeec
Q 004064 619 RQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 667 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe 667 (776)
....+.||+.+-..-....++|||++|+-.....+|....+++||++=-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEEEEEcCCCEEEE
Confidence 6778999998865555556899999998766566788889999999753
No 106
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=31.93 E-value=45 Score=31.46 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=36.8
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEe--cC-ceEEEcCCCCeeec
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIG--ED-GIAVCLSEGDACGE 667 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~--~~-g~i~~l~~G~~fGe 667 (776)
+....+.||.........++++++|++|++++.. .+ +....+.+||++--
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 5566788998765543446799999999988765 33 36778999998753
No 107
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=31.42 E-value=78 Score=29.44 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=34.4
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-....++++|++|.+.+..++ ....+.+||++=
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDD-RVEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETT-EEEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECC-EEEEECCCCEEE
Confidence 344566777765433344678999999999987644 567889999874
No 108
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=30.40 E-value=1.5e+02 Score=28.88 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=37.5
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||..+-..-...+.+++|++|.+++..+ |....+.+||.+=
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~-g~~~~l~~Gd~i~ 202 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD-GKPFIVKKGESAV 202 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET-TEEEEEETTEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC-CEEEEECCCCEEE
Confidence 45677899998865555567899999999998764 4567899999865
No 109
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=29.37 E-value=26 Score=29.68 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=30.4
Q ss_pred ecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 623 YISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 623 y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
..+|+...+..+...++++|++|.+++..+++....+.+||.+=
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ 78 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAV 78 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEE
Confidence 34555333333333789999999999888764667899999874
No 110
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=29.24 E-value=51 Score=30.47 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.8
Q ss_pred ccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 635 LIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 635 ~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
..+++++|++|.+++.. +|....+.+||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g~~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DGRKVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TTEEEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE-CCEEEEEcCCCEEE
Confidence 35679999999999986 66778899999864
No 111
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=27.61 E-value=15 Score=31.12 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=34.1
Q ss_pred ceeeEecCCCEEEccC-CccCEEEEEEeeEEEEEecCc--eEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRG-GLIEKMVFIVRGKMESIGEDG--IAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~G-e~~~~lyfI~~G~V~v~~~~g--~i~~l~~G~~fG 666 (776)
.+...+.||+.+-..- ......|+|.+|.+.+...|| ....+.+|+.+=
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ 70 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYA 70 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEE
Confidence 4556788998885443 334568889999999988776 345678888654
No 112
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=27.59 E-value=64 Score=30.14 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=33.3
Q ss_pred eeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 619 RQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....+.||..+-..-....++++|++|++++..+ |....+.+||++=
T Consensus 56 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~-g~~~~l~~GD~i~ 102 (166)
T 3jzv_A 56 RYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVG-RAVSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEECEEEEET-TEEEEECTTCEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEEC-CEEEEeCCCCEEE
Confidence 3445667766543334456799999999998764 4567899999874
No 113
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=27.41 E-value=67 Score=29.63 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=32.4
Q ss_pred eeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 620 QKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 620 ~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
...+.||..+-..-....++++|++|.+++.. +|....+.+||++=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-~g~~~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV-GETISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE-TTEEEEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE-CCEEEEeCCCCEEE
Confidence 34556776554333445679999999999886 44567889999874
No 114
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=27.08 E-value=46 Score=33.86 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=34.7
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+-...+.||..--......+++.||++|++++..++|....+.+|+.+=
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y 120 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAY 120 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCCEEECTTEEEE
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEE
Confidence 3355678887642233446789999999999988646667899999864
No 115
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.05 E-value=88 Score=27.60 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=33.5
Q ss_pred eeeEecCCCEEEccCCc-cCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 619 RQKTYISGSKILYRGGL-IEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~-~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....+.||..+-.---. ..++++|++|.+++..+ +....+.+||.+=
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~-~~~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN-GKDVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET-TEEEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEEC-CEEEEeCCCcEEE
Confidence 34567888866432222 46899999999998764 4567788999864
No 116
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=27.00 E-value=81 Score=31.33 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=38.6
Q ss_pred HceeeEecCCCEEEc-cCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeec
Q 004064 617 RLRQKTYISGSKILY-RGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 667 (776)
Q Consensus 617 ~l~~~~y~~ge~I~~-~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe 667 (776)
.+....+.||..+-. +-...++.++|++|++.+.. +|....+++||++--
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-~~~~~~l~~GD~~~~ 216 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-EENYYPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-TTEEEEEETTCEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-CCEEEEcCCCCEEEE
Confidence 356678899988753 44556789999999998775 566778999998763
No 117
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=26.85 E-value=51 Score=28.37 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=26.3
Q ss_pred CccCEEEEEEeeEEEEEecCceE-EEcCCCCeeec
Q 004064 634 GLIEKMVFIVRGKMESIGEDGIA-VCLSEGDACGE 667 (776)
Q Consensus 634 e~~~~lyfI~~G~V~v~~~~g~i-~~l~~G~~fGe 667 (776)
...+++++|++|.+++..+++.. ..+.+||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCEEEE
Confidence 34568999999999998866541 67999998753
No 118
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=26.36 E-value=93 Score=26.85 Aligned_cols=47 Identities=9% Similarity=-0.027 Sum_probs=32.5
Q ss_pred eeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 619 RQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....+.||...-..-....++++|.+|.+.+..+ |....+.+||++=
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~-~~~~~l~~Gd~~~ 83 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRIN-DEDFPVTKGDLII 83 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEET-TEEEEEETTCEEE
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEEC-CEEEEECCCcEEE
Confidence 3445667764433333456899999999998874 4567889999865
No 119
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=26.22 E-value=1.2e+02 Score=28.36 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=33.1
Q ss_pred eeEecCCCEEEc--cCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 620 QKTYISGSKILY--RGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 620 ~~~y~~ge~I~~--~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
...+.||...-. -.....++++|++|.+++.. ++....+.+||.+=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-DEQWHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-TTEEEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-CCEEEEeCCCCEEE
Confidence 345778776542 22334689999999999876 45667899999864
No 120
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=25.33 E-value=65 Score=29.54 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=33.9
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCc--------eEEEcCCCCeee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG--------IAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g--------~i~~l~~G~~fG 666 (776)
+....+.||..+-..-....++++|.+|.+.+...++ ....+.+||++=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 3345577777542222235679999999999887551 677899999864
No 121
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=25.12 E-value=94 Score=30.73 Aligned_cols=47 Identities=4% Similarity=-0.009 Sum_probs=35.2
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDAC 665 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~f 665 (776)
+....+.||..+-.---...++++|++|.+++.. +|....+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~-~~~~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV-GDVTRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE-TTEEEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE-CCEEEEECCCCEE
Confidence 4455688888775544456789999999999887 4566789999843
No 122
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=24.99 E-value=1.2e+02 Score=30.67 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEEcCCccccCCCeEe
Q 004064 205 QWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELV 284 (776)
Q Consensus 205 ~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~~~~~~~~~~g~lV 284 (776)
.++.+++++.+.+++.+.+...- .........+..++.++-++|.+|+++++... |
T Consensus 31 ~f~~~i~~li~l~~i~~~~~~~~----------~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~-----------~--- 86 (285)
T 3rvy_A 31 FFTKFIIYLIVLNGITMGLETSK----------TFMQSFGVYTTLFNQIVITIFTIEIILRIYVH-----------R--- 86 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCT----------THHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT-----------G---
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------h---
Confidence 67777777777777665543211 01112345788999999999999999998432 2
Q ss_pred eCHHHHHHHHHhh-hHHHHHHhhcCH
Q 004064 285 DHPKKIALNYLRG-YFFIDFFVALPL 309 (776)
Q Consensus 285 ~d~k~Ia~~Ylk~-~F~~Dlis~lP~ 309 (776)
.+|+++ |-++|+++++|.
T Consensus 87 -------~~y~~~~wn~~Dl~~v~~~ 105 (285)
T 3rvy_A 87 -------ISFFKDPWSLFDFFVVAIS 105 (285)
T ss_dssp -------GGGGGCHHHHHHHHHHHHH
T ss_pred -------HHHHcCChHHhHHHHHHHH
Confidence 469988 899999988776
No 123
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=24.81 E-value=78 Score=29.25 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=34.3
Q ss_pred ceeeEecCCCEEE--ccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeec
Q 004064 618 LRQKTYISGSKIL--YRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 667 (776)
Q Consensus 618 l~~~~y~~ge~I~--~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe 667 (776)
+....+.||.... +..+..+++++|++|++++...+ ....+.+||.+--
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~-~~~~l~~GD~i~i 95 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ-GEHPMVPGDCAAF 95 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT-EEEEECTTCEEEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC-EEEEeCCCCEEEE
Confidence 3456677887542 22233468999999999988754 5678999998753
No 124
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=24.68 E-value=1.1e+02 Score=31.22 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=39.0
Q ss_pred HceeeEecCCCEEEc-cCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 617 RLRQKTYISGSKILY-RGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 617 ~l~~~~y~~ge~I~~-~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
.+....+.||..|-. +-...++.++|++|+..+.. +|....+++||++-
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~-~~~~~~v~~GD~~~ 241 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL-NQDWVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE-TTEEEEEETTCEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE-CCEEEEeCCCCEEE
Confidence 366778999999974 44555688999999998765 56788999999874
No 125
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=23.99 E-value=62 Score=34.56 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=39.2
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeech
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEE 668 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~ 668 (776)
+....+.||+.+-..-....++|||++|+-.....||....+++||++=--
T Consensus 105 a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~~~~~~GD~v~iP 155 (368)
T 3nw4_A 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTP 155 (368)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEEEEEETTCEEEEC
T ss_pred EEEEEECCCCccCceecccceEEEEEecceEEEEECCEEEEEeCCCEEEEC
Confidence 445678899988665555679999999997545567888889999997643
No 126
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=23.98 E-value=80 Score=28.84 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=33.8
Q ss_pred ceeeEecCCCE-E-EccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 618 LRQKTYISGSK-I-LYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 618 l~~~~y~~ge~-I-~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
+....+.||.. . .+.....+++++|++|.+.+..++ ....+.+||++-
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~i~ 97 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEN-DQYPIAPGDFVG 97 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETT-EEEEECTTCEEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECC-EEEEeCCCCEEE
Confidence 34466788874 2 222235678999999999988644 567899999874
No 127
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=23.62 E-value=81 Score=27.59 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=25.7
Q ss_pred cCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 636 IEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 636 ~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
..++++|++|.+++...++....+.+||.+=
T Consensus 64 ~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ 94 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYEDIGAVMLEAGGSAF 94 (134)
T ss_dssp SCEEEEEEESEEEEEETTTEEEEEETTCEEE
T ss_pred CcEEEEEEeCEEEEEECCcEEEEecCCCEEE
Confidence 3789999999999988664677899999864
No 128
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=23.11 E-value=1.3e+02 Score=28.80 Aligned_cols=50 Identities=6% Similarity=0.053 Sum_probs=35.8
Q ss_pred ceeeEecCCCEEEcc-CCccCEEEEEEeeEEEEEecC-----ce--EEEcCCCCeeec
Q 004064 618 LRQKTYISGSKILYR-GGLIEKMVFIVRGKMESIGED-----GI--AVCLSEGDACGE 667 (776)
Q Consensus 618 l~~~~y~~ge~I~~~-Ge~~~~lyfI~~G~V~v~~~~-----g~--i~~l~~G~~fGe 667 (776)
+....+.||...-.. ....+++++|++|++++...+ +. ...+.+||.+--
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~i 131 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVI 131 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEE
Confidence 455678888866433 233579999999999986532 33 788999998854
No 129
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=22.92 E-value=74 Score=33.71 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=36.9
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeec
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 667 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe 667 (776)
+....+.||...-..-....++++|++|+..+..-+|....+.+||+|=-
T Consensus 102 ~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~~~~l~~GD~~~i 151 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILT 151 (354)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEE
T ss_pred EEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCEEEEEcCCCEEEE
Confidence 34567888888743333467899999999877444667789999999853
No 130
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=22.54 E-value=74 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.8
Q ss_pred cCEEEEEEeeEEEEEecCceEEEcCCCCeeec
Q 004064 636 IEKMVFIVRGKMESIGEDGIAVCLSEGDACGE 667 (776)
Q Consensus 636 ~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe 667 (776)
.+++..|++|.+.+..++|....+.+||.|--
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~~ 217 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSSLTVNTGDTVFV 217 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCEEEECTTCEEEE
T ss_pred CCEEEEEEEeEEEEEeCCCCEEEECCCCEEEE
Confidence 45788999999999988888889999999863
No 131
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=22.45 E-value=74 Score=29.89 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=25.4
Q ss_pred ccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 635 LIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 635 ~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
.++.++||++|.+++... +....+.+||.|=
T Consensus 109 ~gEE~~yVLeG~v~vtl~-g~~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVC-KNKFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEET-TEEEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEEC-CEEEEEcCCCEEE
Confidence 456799999999999874 4666899999875
No 132
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=22.10 E-value=77 Score=34.16 Aligned_cols=78 Identities=17% Similarity=0.081 Sum_probs=53.5
Q ss_pred ceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhccccccccccccccCCCCccccee
Q 004064 618 LRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNR 697 (776)
Q Consensus 618 l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~ 697 (776)
+....+.||+..-..-.....+|+|++|+..+.. +|....+.+||+|=.-...+ .
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V-~ge~~~~~~GD~~~iP~g~~------------------------H 350 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV-GGKRFDWSEHDIFCVPAWTW------------------------H 350 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE-TTEEEEECTTCEEEECTTCC------------------------E
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE-CCEEEEEeCCCEEEECCCCe------------------------E
Confidence 3567788988876655567789999999985554 66788999999986443321 1
Q ss_pred EEEE---cCeEEEEEeeHHHHHHHHH
Q 004064 698 TVRC---LTNVEAFSLRAADIEEVTS 720 (776)
Q Consensus 698 tv~A---lt~~el~~L~~~df~~ll~ 720 (776)
.+.. -+++.++++.-.-+.+-+.
T Consensus 351 ~~~N~g~~e~~~ll~i~D~Pl~~~Lg 376 (394)
T 3bu7_A 351 EHCNTQERDDACLFSFNDFPVMEKLG 376 (394)
T ss_dssp EEEECCSSCCEEEEEEESHHHHHHTT
T ss_pred EeEeCCCCCCeEEEEeeCHHHHHHhh
Confidence 2222 3568888887666655444
No 133
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=21.88 E-value=91 Score=27.12 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=32.1
Q ss_pred eeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 619 RQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 619 ~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....+.||..+-.--....++++|.+|.+++..++ ....+.+||++=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~ 97 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQ-GEETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSS-CEEEEETTEEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECC-EEEEECCCCEEE
Confidence 34456666655333334678999999999987654 456788888764
No 134
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=21.63 E-value=1e+02 Score=26.54 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=30.9
Q ss_pred eeeEecCCCEEE--ccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeee
Q 004064 619 RQKTYISGSKIL--YRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACG 666 (776)
Q Consensus 619 ~~~~y~~ge~I~--~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fG 666 (776)
....+.||..+- ..-+..+.+|+|.+|.+.+..+ +....+.+||++=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~-~~~~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID-GEKIELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET-TEEEEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC-CEEEEeCCCCEEE
Confidence 345567776552 2223334577799999998764 4556788888764
Done!