Query 004065
Match_columns 776
No_of_seqs 253 out of 756
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.5 0.06 2.1E-06 59.2 17.3 85 186-277 130-222 (511)
2 3gia_A Uncharacterized protein 96.4 0.014 4.7E-07 63.1 11.4 105 160-276 98-208 (444)
3 3l1l_A Arginine/agmatine antip 95.6 0.075 2.6E-06 57.2 12.4 100 167-275 105-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 23.4 30 0.001 32.1 1.6 21 746-768 30-50 (124)
5 3luu_A Uncharacterized protein 19.4 37 0.0013 30.0 1.4 17 745-761 34-50 (101)
6 2l6n_A Uncharacterized protein 18.0 45 0.0015 31.3 1.6 14 746-759 37-50 (132)
7 1nrp_R Receptor based peptide 16.9 44 0.0015 22.7 0.9 17 307-323 4-20 (26)
8 2rdd_B UPF0092 membrane protei 15.5 1.7E+02 0.0057 21.5 3.9 36 466-501 1-36 (37)
9 3ghp_A Cellulosomal scaffoldin 15.3 42 0.0014 34.1 0.7 13 232-244 46-58 (227)
10 1tyj_A Cellulosomal scaffoldin 13.9 41 0.0014 32.9 0.2 13 232-244 37-49 (170)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.50 E-value=0.06 Score=59.16 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=49.0
Q ss_pred EehhHHHHHHHHHhhcccccchhhhhhhhH----HHHHHHHHhhhhhhhccccCccee----eecChHHHHHHHHhcCcc
Q 004065 186 VVFLACLVLIGHFVLQYRGTHRVAFMFAPV----VILWLLSTTGIGIYNVIKWNPRVY----QALSPYYIYKFFKYTGRD 257 (776)
Q Consensus 186 Vv~is~~ILv~LF~~Q~~GT~kvg~~F~PI----m~vWf~~i~~~GiynI~~~~p~Vl----~AlnP~ya~~ff~~~~~~ 257 (776)
...+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456778888888899999988777654332 222344555667666554333221 1222211 1234
Q ss_pred eeeecchhhhhccchhhhhh
Q 004065 258 GWTSLAGLFLCTTGSEAMFA 277 (776)
Q Consensus 258 g~~~LG~V~L~iTG~EALyA 277 (776)
+|..+..++.+.+|-|+.-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 56677888999999998644
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.43 E-value=0.014 Score=63.10 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=55.5
Q ss_pred cccchhhhhhhhccceecccCCCcc-eEehhHHHHHHHHHhhcccccchhhhh---hhhHHHHHHHHHhhhhhhhccccC
Q 004065 160 VLTPAISVLSSIDGLQVQLQNRHTR-MVVFLACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWN 235 (776)
Q Consensus 160 vlTPAISVLSAveGl~v~~p~~~~~-~Vv~is~~ILv~LF~~Q~~GT~kvg~~---F~PIm~vWf~~i~~~GiynI~~~~ 235 (776)
+++.|....+..+=+....|...++ +...+++++++++..+.-+|....+++ +..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 4455555555444443333332221 234567888888888899998766654 44444444444445555543 4
Q ss_pred cceeee-cChHHHHHHHHhcCcce-eeecchhhhhccchhhhh
Q 004065 236 PRVYQA-LSPYYIYKFFKYTGRDG-WTSLAGLFLCTTGSEAMF 276 (776)
Q Consensus 236 p~Vl~A-lnP~ya~~ff~~~~~~g-~~~LG~V~L~iTG~EALy 276 (776)
|+-+.. ++|. +..+ +..+...+.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCCc---------chHHHHHHHHHHHHHHHhHHHHH
Confidence 443322 2332 1111 223344567889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.62 E-value=0.075 Score=57.21 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=47.3
Q ss_pred hhhhhccceecccCCCcce-EehhHHHHHHHHHhhcccccchhhhh---hhhHHHHHHHHHhhhhhhhccccCccee-ee
Q 004065 167 VLSSIDGLQVQLQNRHTRM-VVFLACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWNPRVY-QA 241 (776)
Q Consensus 167 VLSAveGl~v~~p~~~~~~-Vv~is~~ILv~LF~~Q~~GT~kvg~~---F~PIm~vWf~~i~~~GiynI~~~~p~Vl-~A 241 (776)
..+..+=++...|...+++ ...+++++++++..+--+|.+..+++ +.++.++=++.+.+.|+. ..+|+.+ ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~ 181 (445)
T 3l1l_A 105 VVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAA 181 (445)
T ss_dssp HHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC
T ss_pred HHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccc
Confidence 3333443433344433221 33466777777778888888777765 444444333333444443 3355543 33
Q ss_pred cChHHHHHHHHhcCcce-eeecchhhhhccchhhh
Q 004065 242 LSPYYIYKFFKYTGRDG-WTSLAGLFLCTTGSEAM 275 (776)
Q Consensus 242 lnP~ya~~ff~~~~~~g-~~~LG~V~L~iTG~EAL 275 (776)
++|.-. .+..+ +..+..++.+.+|-|+.
T Consensus 182 ~~~~~~------~~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 182 WNVSGL------GTFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp -----------------HHHHHHHHHHTTTTTTHH
T ss_pred cCccCC------ccHHHHHHHHHHHHHHHHhHHHH
Confidence 444210 00111 22344456778898875
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=23.41 E-value=30 Score=32.07 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=14.8
Q ss_pred HHHHHhhcCCCCcccccCCCCEE
Q 004065 746 YSFLRKNSRSPAVFLNIPHICLI 768 (776)
Q Consensus 746 Y~FLRkNcR~~~~~L~IPh~~Ll 768 (776)
|.|||.||+.+...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 5899999999765443 44444
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=19.43 E-value=37 Score=29.96 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHHHHhhcCCCCcccc
Q 004065 745 AYSFLRKNSRSPAVFLN 761 (776)
Q Consensus 745 ~Y~FLRkNcR~~~~~L~ 761 (776)
=|.|||.||+.+...-.
T Consensus 34 ~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 34 TFEHLRVECPCAECKGH 50 (101)
T ss_dssp EHHHHHHTCCCC-----
T ss_pred CHHHHHhhCCChhhcCc
Confidence 37899999997765443
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=18.04 E-value=45 Score=31.25 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=11.7
Q ss_pred HHHHHhhcCCCCcc
Q 004065 746 YSFLRKNSRSPAVF 759 (776)
Q Consensus 746 Y~FLRkNcR~~~~~ 759 (776)
|.|||.||+.+...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 68999999987654
No 7
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=16.90 E-value=44 Score=22.70 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.6
Q ss_pred cchhccCCCccCCcccc
Q 004065 307 AAFLSKNFSAAPLSFHA 323 (776)
Q Consensus 307 aA~ll~~p~~~~npFy~ 323 (776)
-+||++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.50 E-value=1.7e+02 Score=21.49 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHhhhhcCCCC
Q 004065 466 GGWVALMFTTVFLAIMYVWHYGSRKRYLYDLHNKVP 501 (776)
Q Consensus 466 GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~~~~ 501 (776)
|||..++.-++++.+||..-.-..+|.+.+.++-.+
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m~~ 36 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMD 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
No 9
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=15.30 E-value=42 Score=34.09 Aligned_cols=13 Identities=54% Similarity=1.017 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 004065 232 IKWNPRVYQALSP 244 (776)
Q Consensus 232 ~~~~p~Vl~AlnP 244 (776)
++|||.||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
No 10
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=13.85 E-value=41 Score=32.90 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 004065 232 IKWNPRVYQALSP 244 (776)
Q Consensus 232 ~~~~p~Vl~AlnP 244 (776)
++|||+||+|+||
T Consensus 37 IKYDP~vLQaV~~ 49 (170)
T 1tyj_A 37 IKYNTTYLQPWDT 49 (170)
T ss_dssp EECCTTTEEEEET
T ss_pred eeeChhheecccc
Done!