Query 004065
Match_columns 776
No_of_seqs 253 out of 756
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 13:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004065.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004065hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 18.5 37 0.0027 21.8 2.4 20 467-486 5-24 (27)
2 d2yvxa3 f.57.1.1 (A:276-448) M 17.7 25 0.0018 32.2 2.1 120 297-429 12-133 (173)
3 d1or7a2 a.177.1.1 (A:-1-111) S 13.2 51 0.0037 26.7 2.8 24 734-757 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.7 47 0.0034 25.1 -0.1 39 298-338 16-54 (57)
5 d1krha2 c.25.1.2 (A:206-338) B 6.3 1.7E+02 0.012 23.8 3.4 37 349-385 17-53 (133)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 6.2 3.5E+02 0.025 27.3 6.6 52 442-494 377-431 (509)
7 d1jl0a_ d.156.1.1 (A:) S-adeno 5.6 85 0.0062 31.3 1.2 25 702-726 124-148 (325)
8 d1iray2 b.1.1.4 (Y:102-204) Ty 5.6 1.9E+02 0.014 23.0 3.2 57 533-589 22-81 (103)
9 d2bnma1 a.35.1.3 (A:6-76) Hydr 4.9 83 0.006 23.9 0.3 12 81-92 40-51 (71)
10 d1f97a1 b.1.1.1 (A:27-128) Jun 4.8 1.5E+02 0.011 22.6 1.9 25 568-592 67-91 (102)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.50 E-value=37 Score=21.76 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 004065 467 GWVALMFTTVFLAIMYVWHY 486 (776)
Q Consensus 467 GW~pl~ia~~~~~iM~~W~~ 486 (776)
||+.++.-+.-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888888777788888854
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=17.70 E-value=25 Score=32.20 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=70.5
Q ss_pred hHHHHhcccc--cchhccCCCccCCccccccCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCcceEEecC
Q 004065 297 PCLVLQYMGQ--AAFLSKNFSAAPLSFHASIPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKA 374 (776)
Q Consensus 297 P~L~L~Y~GQ--aA~ll~~p~~~~npFy~~iP~~~~~P~~vlAtlAtIIASQA~Isg~FSii~Qai~Lg~fPr~ki~hTS 374 (776)
|-|+++.+|+ +|+++.+-|+.-+-+-. =..+.|+ ++-.+.-++||+. +++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 4455555555 56677665544332221 2356676 6778888899987 4888999999643211 11
Q ss_pred CcccCeeeechhhHHHHHHhheeeEEecCchhHHhhhhchhhhHHHHHHHHHHHH
Q 004065 375 RWVRGQVYIPEINWVLMILSLAVTVGFRDTNRLANAYGSACMALTFVSTLLTSLV 429 (776)
Q Consensus 375 ~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v 429 (776)
+...-++.+-.+|=+.+...+.....+++...++-+=|++...+|++.+++=+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456667777666655554444455555666666666666666666554443
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=13.25 E-value=51 Score=26.67 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCC
Q 004065 734 APFLKRFVINVAYSFLRKNSRSPA 757 (776)
Q Consensus 734 Ss~lKK~vIn~~Y~FLRkNcR~~~ 757 (776)
.+|+.+++-|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998764
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.73 E-value=47 Score=25.09 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=25.2
Q ss_pred HHHHhcccccchhccCCCccCCccccccCCCchhHHHHHHH
Q 004065 298 CLVLQYMGQAAFLSKNFSAAPLSFHASIPDPLRWPVLVVAT 338 (776)
Q Consensus 298 ~L~L~Y~GQaA~ll~~p~~~~npFy~~iP~~~~~P~~vlAt 338 (776)
++++--++=+.|+..+.. +|.-|.++|+.+.|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 333334455566676644 344599999999998776554
No 5
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=6.26 E-value=1.7e+02 Score=23.81 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHcCCCCcceEEecCCcccCeeeech
Q 004065 349 ISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPE 385 (776)
Q Consensus 349 Isg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~ 385 (776)
||-..|+++++.+.+.-+++.++|..+...--+|--+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~e 53 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQ 53 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHH
Confidence 3444555566656565555666666555444444433
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.21 E-value=3.5e+02 Score=27.26 Aligned_cols=52 Identities=15% Similarity=0.374 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccccC---CchHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004065 442 LLYVLFFGSIEIIYLSSACMKIPN---GGWVALMFTTVFLAIMYVWHYGSRKRYLY 494 (776)
Q Consensus 442 ~~~~~~F~~ie~~f~sa~l~Ki~~---GGW~pl~ia~~~~~iM~~W~~G~~~~~~~ 494 (776)
+...++++..=+.+++.......| ++ +.+.+.+.+.++...|.||.++..+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 377 WTAAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred heeEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 333444444444444444333322 33 46667788888999999999877654
No 7
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.64 E-value=85 Score=31.25 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhCCcEEEEeee
Q 004065 702 LRVKEELLQLLEAKCAGVSYIIGHS 726 (776)
Q Consensus 702 ~~v~eEL~~L~~A~eaGVvYIlG~s 726 (776)
.+.++|.+.|++....|-.|++|+-
T Consensus 124 ~sf~~Ev~~L~~~f~~G~aY~~G~~ 148 (325)
T d1jl0a_ 124 RNFQEEIEFLNAIFPNGAGYCMGRM 148 (325)
T ss_dssp SSHHHHHHHHHTTCSSEEEEEESCT
T ss_pred CCHHHHHHHHHHhCCCCceEEecCC
Confidence 4589999999999999999999974
No 8
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.59 E-value=1.9e+02 Score=22.95 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhhhhhcccccceEEEEEEEEEe---cccccCCCceEEEEeecCCCccEEEEEEEeee
Q 004065 533 PTFTHFLTNLPAFYQVVVFICVKTV---PLPYVHHKERYLIGRIGPKSYRMYRCIVRNGY 589 (776)
Q Consensus 533 ~~~~h~v~~~~~lhe~~vfv~i~~~---~vP~V~~~eR~~v~~i~~~~~~~~r~~~ryGy 589 (776)
+.+.++-....-..++.|+-.=+.+ ..-++..+..+.|..+...+.|.|+|.+++.|
T Consensus 22 p~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 81 (103)
T d1iray2 22 PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTY 81 (103)
T ss_dssp TTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEE
T ss_pred CCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECc
No 9
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=4.87 E-value=83 Score=23.93 Aligned_cols=12 Identities=58% Similarity=1.013 Sum_probs=0.0
Q ss_pred CCCChHHHHHHH
Q 004065 81 NGEGGTFSLYAL 92 (776)
Q Consensus 81 ~GEGG~fALysL 92 (776)
|||||-+.|..|
T Consensus 40 ngeggeltltql 51 (71)
T d2bnma1 40 NGEGGELTLTQL 51 (71)
T ss_dssp TTTCTTCBHHHH
T ss_pred cCCCceeeHHHH
No 10
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.77 E-value=1.5e+02 Score=22.63 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred EEEEeecCCCccEEEEEEEeeeccc
Q 004065 568 YLIGRIGPKSYRMYRCIVRNGYKDV 592 (776)
Q Consensus 568 ~~v~~i~~~~~~~~r~~~ryGy~d~ 592 (776)
+.+.++...+.|.|+|.++..+...
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
Done!