BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004067
(776 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 235/748 (31%), Positives = 366/748 (48%), Gaps = 68/748 (9%)
Query: 31 APQTIDDCVLFSLEEIVQSPLPGYVAPTSIG--FSPDDNLITYLLSPDHSLSR-KVFSFD 87
A T+ +LE I PLP PT + +PD + +T+L D ++ ++S+D
Sbjct: 13 ATSTVAHAEKLTLEAIT-GPLP-LSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYD 70
Query: 88 PKTCKQELVFSPPDGGLDENNISP--------XXXXXXXXXXXXXXXVTRYEWVKTSSKK 139
+ + L+ +D + P + Y+W S
Sbjct: 71 IGSGQTRLL-------VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW---SPDA 120
Query: 140 KIIMVPLPDGIYFQDLSC-SKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLL 198
+ ++ PL +Y DL K ++ + D LS G ++F+R L V++L
Sbjct: 121 QRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA 180
Query: 199 INEQRQLTHGANGNT-VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIP---R 254
Q QLT A+G+T + +G+AE++A EEMDR TGYWW+ D IA+ ++D S +P R
Sbjct: 181 SGRQMQLT--ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKR 238
Query: 255 FRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS-AAGGPVSWMDLQCGGTDQNYDE 313
+ + + + YP AG +NV+V+LGV+S A W+DL G +Q+
Sbjct: 239 YEVYADRTDVI------EQRYPAAGDANVQVKLGVISPAEQAQTQWIDL---GKEQDI-- 287
Query: 314 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLD 373
YLARVNW L+ Q +R Q KL +++ + + Q++V+ E +WV LH+ LD
Sbjct: 288 -YLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346
Query: 374 KGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433
G +W+SE+TGF+HLY D G +T G+W V++++ V+E +G YF
Sbjct: 347 ------DGSILWSSERTGFQHLYRIDSKGKA-AALTHGNWSVDELLAVDEKAGLAYFRAG 399
Query: 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 493
++ ES +Y L P +L+ G H A N +VD + +PP+I
Sbjct: 400 IESARESQIYAVPLQGG------QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIE 453
Query: 494 LCSLQDGSLVLPLYEQPLTVP-----RIKRLQLEPPDIVQIQANDG-TVLYGALYKPDES 547
L +G + L E L P R + Q P + + A DG T L ++ KP +
Sbjct: 454 LFR-ANGEKIATLVENDLADPKHPYARYREAQ-RPVEFGTLTAADGKTPLNYSVIKP--A 509
Query: 548 RYGPPP-YKTLISVYGGPCVQLVCDSWINTVD-MRAQYLRSKGILVWKLDNRGTARRGLK 605
+ P Y + VYGGP Q V DSW D + QYL +G +V+ LDNRGT RRG
Sbjct: 510 GFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRD 569
Query: 606 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQC 665
F ++ G ++ DQL G WL +Q I + LA+ D + C
Sbjct: 570 FGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYAC 629
Query: 666 AVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVH 725
V+GAPVT W YD+ YTE+YM LP+ + GY + V+ H+ ++ LLL+HGM D+NV
Sbjct: 630 GVAGAPVTDWGLYDSHYTERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVL 689
Query: 726 FRHTARLINALVAARKPYEILIFPDERH 753
F ++ L++AL +P+E++ +P +H
Sbjct: 690 FTNSTSLMSALQKRGQPFELMTYPGAKH 717
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 171/607 (28%), Positives = 272/607 (44%), Gaps = 43/607 (7%)
Query: 177 LSSDGTMIAFVRDCELHVL---NLLINEQRQLTHGANGN-TVTHGLAEYIAQEEMDRKTG 232
S G +A+VR+ L++ L R + +G T+ +G A + Q E + G
Sbjct: 128 FSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA--VHQREFGIEKG 185
Query: 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292
+WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGIYHL 242
Query: 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQR 351
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 243 ATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 296
Query: 352 -KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410
+ + VE +V T L + FIW S + G+ HLYL+D G + +T+
Sbjct: 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVTK 352
Query: 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470
G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------KTKDLTPESGMHRT 406
Query: 471 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDIV 527
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 407 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR--------TG 458
Query: 528 QIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 585
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 459 TIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA 516
Query: 586 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXX 645
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q I
Sbjct: 517 QKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGW 576
Query: 646 XXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 705
+ DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ ++++
Sbjct: 577 AYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANLLKR 636
Query: 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 765
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 637 AGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHLY 695
Query: 766 ERIWEFI 772
E I +
Sbjct: 696 ETITRYF 702
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 171/607 (28%), Positives = 276/607 (45%), Gaps = 43/607 (7%)
Query: 177 LSSDGTMIAFVRDCELHVL---NLLINEQRQLTHGANGN-TVTHGLAEYIAQEEMDRKTG 232
S G +A+VR+ L++ L R + +G T+ +G A + Q E + G
Sbjct: 128 FSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA--VHQREFGIEKG 185
Query: 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292
+WS +AF ++D S + I+ + +E++ + YP AG + V +G+
Sbjct: 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDY--HPLEAESKPLY-YPMAGTPSHHVTVGIYHL 242
Query: 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQR 351
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 243 ATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 296
Query: 352 -KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410
+ + VE +V T L + FIW S + G+ HLYL+D G + +T+
Sbjct: 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVTK 352
Query: 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470
G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------KTKDLTPESGMHRT 406
Query: 471 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDIV 527
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 407 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR--------TG 458
Query: 528 QIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 585
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 459 TIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA 516
Query: 586 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXX 645
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q I
Sbjct: 517 QKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGW 576
Query: 646 XXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 705
+ DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ ++++
Sbjct: 577 SYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANLLKR 636
Query: 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 765
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 637 AGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHLY 695
Query: 766 ERIWEFI 772
E I +
Sbjct: 696 ETITRYF 702
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 171/607 (28%), Positives = 275/607 (45%), Gaps = 43/607 (7%)
Query: 177 LSSDGTMIAFVRDCELHVL---NLLINEQRQLTHGANGN-TVTHGLAEYIAQEEMDRKTG 232
S G +A+VR+ L++ L R + +G T+ +G A + Q E + G
Sbjct: 128 FSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA--VHQREFGIEKG 185
Query: 233 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292
+WS +AF ++D S + I+ + +E++ + YP AG + V +G+
Sbjct: 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDY--HPLEAESKPLY-YPMAGTPSHHVTVGIYHL 242
Query: 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQR 351
A G + LQ G E++L ++W NIL +NR+Q + KV +D +TG+
Sbjct: 243 ATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 296
Query: 352 -KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410
+ + VE +V T L + FIW S + G+ HLYL+D G + +T+
Sbjct: 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQVTK 352
Query: 411 GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470
G+W V G + ++YF T PLE H YC + LT G H
Sbjct: 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------KTKDLTPESGMHRT 406
Query: 471 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPPDIV 527
L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 407 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR--------TG 458
Query: 528 QIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 585
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V Y+
Sbjct: 459 TIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA 516
Query: 586 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXX 645
KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q I
Sbjct: 517 QKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGW 576
Query: 646 XXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 705
+ DVF+ V+G PV W+ Y Y E+Y P E+P GY+ ++++
Sbjct: 577 SYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANLLKR 636
Query: 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 765
+KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+++
Sbjct: 637 AGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRVHLY 695
Query: 766 ERIWEFI 772
E I +
Sbjct: 696 ETITRYF 702
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/610 (24%), Positives = 269/610 (44%), Gaps = 71/610 (11%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G+ +A+V +++ + Q+T N + +G+ +++ +EEM K WWS +
Sbjct: 121 GSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG 180
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS----AAGG 295
KF+A+ + + ++IP + G + YP AGA N VR+ ++ A G
Sbjct: 181 KFLAYAEFNDTDIPVIAYSYYGDEQYPRTI--NIPYPKAGAKNPVVRIFIIDTTYPAYVG 238
Query: 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355
P + + +Y Y + + W+ + Q L R Q + D +
Sbjct: 239 PQE-VPVPAMIASSDY---YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFR-------- 286
Query: 356 VEELDSWVNLHDCFTP---LDKGVTKYSGGFIWA---------------SEKTGFRHL-Y 396
E+ +W DC +++ T ++GGF + S+K G++H+ Y
Sbjct: 287 -EDWQTW----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341
Query: 397 LHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL--YPDWNHT 454
+ D + IT G W I V + S + P ++Y + YP
Sbjct: 342 IKDTVENAI-QITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKC 400
Query: 455 LEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL---VLPLYEQPL 511
+ ++ + + ++ ++ + P I + +L DG + L E
Sbjct: 401 VTCHLR-----KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILEENKE 455
Query: 512 TVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV-- 569
+K +QL +I +++ ++ T+ Y + P R Y LI VYGGPC Q V
Sbjct: 456 LENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDR--SKKYPLLIQVYGGPCSQSVRS 513
Query: 570 --CDSWINTVDMRAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGA 626
+WI+ YL SK G+++ +D RGTA +G K ++ G + EDQ+T
Sbjct: 514 VFAVNWIS-------YLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAV 566
Query: 627 EWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 686
I+ G I ++ LA +F+C ++ APV+SW+ Y + YTE++
Sbjct: 567 RKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERF 626
Query: 687 MGLPSEDP--VGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPY 743
MGLP++D Y+ S+VM + LL+HG D+NVHF+++A++ ALV A+ +
Sbjct: 627 MGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDF 686
Query: 744 EILIFPDERH 753
+ + + D+ H
Sbjct: 687 QAMWYSDQNH 696
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 149/606 (24%), Positives = 253/606 (41%), Gaps = 59/606 (9%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V N +++T N + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKNEPNLSSQRITWTGKENVIYNGVTDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW 299
F+A+ Q + +E+P S+ YP AGA N V+ VV
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRIPYPKAGAENPTVKFFVVDT------- 235
Query: 300 MDLQCGGTDQNYD----------EEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIK 347
L + +Y + YL V W+ ++ Q + R+Q + + + +D
Sbjct: 236 RTLSPNASVTSYQIVPPASVLIGDHYLCGVTWVTEERISLQWIRRAQNYSIIDICDYDES 295
Query: 348 TGQ------RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDI 400
TG+ R+ I + WV F P + T F S + G++H+
Sbjct: 296 TGRWISSVARQHIEISTT-GWVGR---FRPAEPHFTSDGNSFYKIISNEEGYKHICHFQT 351
Query: 401 NGTCLGPITEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEA 457
+ + IT+G W +++G+ + Y + G P +LY +L D+
Sbjct: 352 DKSNCTFITKGAW---EVIGIEALTSDYLYYISNEHKGMPGGRNLYRIQL-NDYTKVTCL 407
Query: 458 PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIK 517
+L + ++ + N + P L S + L + ++
Sbjct: 408 SCELNPERCQYYSASFSNKAKYYQLRCFGPGLPLYTLHSSSSDKELRVLEDNSALDKMLQ 467
Query: 518 RLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCD---- 571
+Q+ + I + Y + P D+S+ Y LI VY GPC Q V
Sbjct: 468 DVQMPSKKLDVINLHGTKFWYQMILPPHFDKSK----KYPLLIEVYAGPCSQKVDTVFRL 523
Query: 572 SWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630
SW A YL S + I+V D RG+ +G K +I G + EDQ+
Sbjct: 524 SW-------ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEATRQFS 576
Query: 631 KQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 690
K G I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP
Sbjct: 577 KMGFVDDKRIAIWGWSYGGYVTSMVLGAGSGVFKCGIAVAPVSKWEYYDSVYTERYMGLP 636
Query: 691 S-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 747
+ ED + Y S+VM K + LL+HG D+NVHF+ +A+L ALV A ++ +
Sbjct: 637 TPEDNLDYYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQLSKALVDAGVDFQTMW 696
Query: 748 FPDERH 753
+ DE H
Sbjct: 697 YTDEDH 702
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 131 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 190
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 191 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 250
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 251 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 310
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 311 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 367
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 368 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 423
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 424 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 483
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 484 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 533
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 534 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 593
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 594 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 653
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 654 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 710
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 125 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 184
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 185 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 244
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 245 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 304
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 305 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 361
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 362 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 417
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 418 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 477
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 478 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 527
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 528 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 587
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 588 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 647
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 648 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 704
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 161 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 220
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 221 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 280
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 281 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 340
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 341 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 397
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 398 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 453
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 454 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 513
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 514 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 563
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 564 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 623
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 624 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 683
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 684 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 740
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 133 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 192
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 193 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 252
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 253 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 312
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 313 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 369
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 370 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 425
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 426 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 485
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 486 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 535
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 536 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 595
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 596 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 655
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 656 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 712
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 129 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 188
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 189 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 248
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 249 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 308
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 309 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 365
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 366 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 421
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 422 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 481
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 482 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 531
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 532 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 591
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 592 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 651
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 652 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 708
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 131 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 190
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 191 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 250
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 251 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 310
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 311 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 367
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 368 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 423
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 424 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 483
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 484 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 533
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 534 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 593
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 594 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 653
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 654 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 710
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 135 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 194
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 195 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 254
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 255 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 314
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 315 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 371
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 372 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 427
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 428 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 487
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 488 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 537
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 538 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 597
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 598 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 657
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 658 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 714
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 134 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 193
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 194 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 253
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 254 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 313
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 314 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 370
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 371 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 426
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 427 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 486
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 487 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 536
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 537 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 596
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 597 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 656
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 657 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 713
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 303 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 360 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 415
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 475
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 525
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 526 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 585
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 586 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 645
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 702
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 124 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 183
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 184 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 243
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 244 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 303
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 304 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 360
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 361 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 416
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 417 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 476
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 477 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 526
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 527 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 586
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 587 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 646
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 647 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 703
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 126 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 185
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 186 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 245
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 246 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 305
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 306 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 362
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 363 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 418
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 419 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 478
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 479 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 528
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 529 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 588
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 589 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 648
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 649 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 705
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 303 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 360 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 415
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 475
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 525
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 526 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 585
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 586 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 645
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 702
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 303 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 360 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 415
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 475
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 525
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 526 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 585
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 586 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 645
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 702
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 126 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 185
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 186 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 245
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 246 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 305
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 306 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 362
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 363 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 418
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 419 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 478
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 479 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 528
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 529 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 588
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 589 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 648
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 649 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 705
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 303 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 360 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 415
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 475
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 525
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 526 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 585
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 586 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 645
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 702
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 303 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 360 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 415
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 475
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 525
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 526 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 585
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 586 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 645
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 702
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 303 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 360 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-IDYTKVTCLSCELNPER 415
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 475
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 525
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 526 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 585
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 586 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 645
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 702
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 146/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 128 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 187
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 188 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 247
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 248 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 307
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 308 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 364
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 365 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 420
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 421 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 480
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 481 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 530
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 531 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 590
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 591 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 650
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 651 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 707
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 145/597 (24%), Positives = 253/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 303 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359
Query: 409 TEGDWMVEQIVGVNEASGQV--YFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 360 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 415
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 475
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I N+ Y + P D+S+ Y L+ V+ GPC Q +TV R
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVFAGPCSQKA-----DTV-FRLNW 525
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 526 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 585
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 586 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 645
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 646 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 702
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 145/597 (24%), Positives = 252/597 (42%), Gaps = 41/597 (6%)
Query: 181 GTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDS 239
G +A+V + +++V ++T + + +G+ +++ +EE+ + WWS +
Sbjct: 131 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 190
Query: 240 KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS--AAGGPV 297
F+A+ Q + +E+P S+ YP AGA N V+ VV+ +
Sbjct: 191 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 250
Query: 298 SWMDLQCGG-TDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVI 354
+ +Q + YL V W ++ Q L R Q + + + +D +G+ +
Sbjct: 251 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 310
Query: 355 LVEE-----LDSWVNLHDCFTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGTCLGPI 408
+ + WV F P + T F S + G+RH+ I+ I
Sbjct: 311 VARQHIEMSTTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 367
Query: 409 TEGDWMVEQIVGVNEASGQ--VYFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGK 465
T+G W +++G+ + Y + G P +LY +L D+ +L +
Sbjct: 368 TKGTW---EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL-SDYTKVTCLSCELNPER 423
Query: 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 525
++ +V + S P L S + + L + ++ +Q+
Sbjct: 424 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKK 483
Query: 526 IVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--- 580
+ I + Y + P D+S+ Y L+ VY GPC Q +TV R
Sbjct: 484 LDFIILAETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKA-----DTV-FRLNW 533
Query: 581 AQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 639
A YL S + I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 534 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 593
Query: 640 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS-EDPVG-Y 697
I ++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ ED + Y
Sbjct: 594 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 653
Query: 698 EYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 654 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 710
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 136/567 (23%), Positives = 239/567 (42%), Gaps = 32/567 (5%)
Query: 203 RQLTHGANGNTVTHGLAEYIAQEE-MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRI-MHQ 260
R ++ G G + +GL++++ +EE + +WWS D +A+ ++ S +P + +
Sbjct: 148 RVVSTGKEG-VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT 206
Query: 261 GKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVN 320
G S+ + H YP AG+ N + L V+ GP +++ D E Y+ V
Sbjct: 207 G--SIYPTVKPYH-YPKAGSENPSISLHVI-GLNGPTHDLEMMPPD-DPRMREYYITMVK 261
Query: 321 WMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 380
W + LNR+Q + D TG +E ++W++ + K K+
Sbjct: 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321
Query: 381 GGFIWASEKTG---FRHLYLH----DINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433
FI A + G F H+ + + + + IT GDW V +I+ +E ++YF T
Sbjct: 322 --FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379
Query: 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSP--PR 491
D P LY A ++N + L A H+M F+ + P P
Sbjct: 380 EDLPRRRQLYSANTVGNFNRQCLS-CDLVENCTYFSASFSHSMDFFLL---KCEGPGVPM 435
Query: 492 ILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP 551
+ + + D + L I Q+ + I+ +D + L KP +
Sbjct: 436 VTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQIL-KP-ATFTDT 493
Query: 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611
Y L+ V G P Q V + + V + S G +V K D RG+ +G K ++
Sbjct: 494 THYPLLLVVDGTPGSQSVAEKF--EVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVR 551
Query: 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPD----VFQCAV 667
G ++ +DQ+ ++K+ + L + F C
Sbjct: 552 RRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGS 611
Query: 668 SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHF 726
+ +P+T + Y + ++E+Y+GL D YE + V H V ++ + L++H DE +HF
Sbjct: 612 ALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHF 671
Query: 727 RHTARLINALVAARKPYEILIFPDERH 753
+HTA LI L+ + Y + I+PDE H
Sbjct: 672 QHTAELITQLIRGKANYSLQIYPDESH 698
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 149/612 (24%), Positives = 253/612 (41%), Gaps = 62/612 (10%)
Query: 178 SSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWS 236
S +G +A+V +++V ++T N + +G+ +++ +EE+ + WWS
Sbjct: 119 SQEGHKLAYVWKNDIYVKIEPHLPSHRITSTGKENVIFNGINDWVYEEEIFGAYSALWWS 178
Query: 237 LDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296
+ F+A+ Q + + +P S+ YP AGA N V+ +V+
Sbjct: 179 PNGTFLAYAQFNDTGVPLIEYSFYSDESLQYPKTVWIPYPKAGAVNPTVKFFIVNTDSLS 238
Query: 297 VSWMDLQCGGT---DQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQR 351
+ + T + YL V W+ + ++ Q L R Q + + + +D T
Sbjct: 239 STTTTIPMQITAPASVTTGDHYLCDVAWVSEDRISLQWLRRIQNYSVMAICDYDKTTLVW 298
Query: 352 KVILVEELDSWVNLHDC--FTPLDKGVTKYSGGFI-WASEKTGFRHLYLHDINGT---CL 405
+E C F P + T F S+K G++H+ +
Sbjct: 299 NCPTTQEHIETSATGWCGRFRPAEPHFTSDGSSFYKIVSDKDGYKHICQFQKDRKPEQVC 358
Query: 406 GPITEGDWMVEQIVGVNEASGQVYFTGT--LDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463
IT+G W V I + S +Y+ + P +LY ++LT+
Sbjct: 359 TFITKGAWEVISIEAL--TSDYLYYISNEYKEMPGGRNLY--------------KIQLTD 402
Query: 464 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY-------EQPLTV--- 513
K D N + SL + + L PLY ++ L V
Sbjct: 403 HTNKKCLSCDLNPERCQYYSVSLSKEAKYYQLGCRGPGL--PLYTLHRSTDQKELRVLED 460
Query: 514 -----PRIKRLQLEPPDIVQIQANDGTVLYGALYKP--DESRYGPPPYKTLISVYGGPCV 566
++ +Q+ + I N+ Y + P D+S+ Y LI VY GPC
Sbjct: 461 NSALDKMLQDVQMPSKKLDFIVLNETRFWYQMILPPHFDKSK----KYPLLIDVYAGPCS 516
Query: 567 QLVCDSW-INTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 624
Q ++ +N A YL S + I+V D RG+ +G K +I G ++ EDQ+
Sbjct: 517 QKADAAFRLNW----ATYLASTENIIVASFDGRGSGYQGDKIMHAINKRLGTLEVEDQIE 572
Query: 625 GAEWLIKQGLAKVGHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE 684
A +K G + ++ L VF+C ++ APV+ W+ YD+ YTE
Sbjct: 573 AARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTE 632
Query: 685 KYMGLPS-EDPVG-YEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARK 741
+YMGLP+ ED + Y S+VM K + LL+HG D+NVHF+ +A++ ALV A
Sbjct: 633 RYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDAGV 692
Query: 742 PYEILIFPDERH 753
++ + + DE H
Sbjct: 693 DFQAMWYTDEDH 704
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 121/284 (42%), Gaps = 29/284 (10%)
Query: 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 537
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 274 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 326
Query: 538 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 327 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 378
Query: 598 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 656
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 379 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 437
Query: 657 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 438 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 492
Query: 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
K L L+H D + RL+ L+A K +E I PD H
Sbjct: 493 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 536
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 121/284 (42%), Gaps = 29/284 (10%)
Query: 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 537
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 538 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 598 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 656
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYAYGGYMTLCALTM 457
Query: 657 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
K L L+H D + RL+ L+A K +E I PD H
Sbjct: 513 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 121/284 (42%), Gaps = 29/284 (10%)
Query: 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 537
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 538 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 598 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 656
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 657 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
K L L+H D + RL+ L+A K +E I PD H
Sbjct: 513 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 120/284 (42%), Gaps = 29/284 (10%)
Query: 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 537
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 538 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597
+ ES P P T++ V GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVAGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 598 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 656
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 657 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
K L L+H D + RL+ L+A K +E I PD H
Sbjct: 513 KEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 121/284 (42%), Gaps = 29/284 (10%)
Query: 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 537
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 538 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 598 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 656
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 657 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
K L L+H + + RL+ L+A K +E I PD H
Sbjct: 513 KEPLALIHPQNNSRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 120/284 (42%), Gaps = 29/284 (10%)
Query: 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 537
V H SL +PPRI+ SL G PL E L P R + +V +++ DG+ +
Sbjct: 294 KLVTSHTSLSTPPRIV--SLPSGE---PLLEGGL--PEDLRRSIAGSRLVWVESFDGSRV 346
Query: 538 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 597
+ ES P P T++ V+GGP + DSW D A L + G V + R
Sbjct: 347 PTYVL---ESGRAPTPGPTVVLVHGGPFAE-DSDSW----DTFAASLAAAGFHVVMPNYR 398
Query: 598 GTARRGLKFEASIKHN-CGRIDAEDQLTGAEWLIKQGLAKVGHIXXXXXXXXXXXXAITL 656
G+ G ++ I + CG + ED A W + GLA +I A+T+
Sbjct: 399 GSTGYGEEWRLKIIGDPCGG-ELEDVSAAARWARESGLASELYIMGYSYGGYMTLCALTM 457
Query: 657 ARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709
P +F+ V+GA V W D + E+ G E S ++HV ++
Sbjct: 458 K--PGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI---MRSRSPINHVDRI 512
Query: 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 753
K L L+H + RL+ L+A K +E I PD H
Sbjct: 513 KEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGH 556
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 21/256 (8%)
Query: 524 PDIVQIQANDGTVLYGALYKPDESRY-GP----PPYKTLISVYGGPCVQLVCDSWINTVD 578
P I A DG ++ +Y P + GP PPY ++ +GGP ++ +D
Sbjct: 391 PQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPY--VVXAHGGPTSRVPA-----VLD 443
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 638
+ Y S+GI V ++ G+ G + ++ G +D ED A L ++G A
Sbjct: 444 LDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRA 503
Query: 639 HIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPV---TSW-DG----YDTFYTEKYMGLP 690
+ A +L DV+ C PV W DG +++ Y + +G
Sbjct: 504 RLAVRGGSAGGWTAASSLVST-DVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSF 562
Query: 691 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750
E P Y + + +++ LL+ G+ D R + A+ P+ L F
Sbjct: 563 EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEG 622
Query: 751 ERHMPRRHRDRIYMEE 766
E H RR + E
Sbjct: 623 EGHGFRRKETXVRALE 638
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 21/247 (8%)
Query: 524 PDIVQIQANDGTVLYGALYKPDESRY-GP----PPYKTLISVYGGPCVQLVCDSWINTVD 578
P I A DG ++ +Y P + GP PPY ++ +GGP ++ +D
Sbjct: 391 PQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPY--VVMAHGGPTSRVPA-----VLD 443
Query: 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 638
+ Y S+GI V ++ G+ G + ++ G +D ED A L ++G A
Sbjct: 444 LDVAYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRA 503
Query: 639 HIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPV---TSW-DG----YDTFYTEKYMGLP 690
+ A +L DV+ C PV W DG +++ Y + +G
Sbjct: 504 RLAVRGGAAGGWTAASSLVST-DVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSF 562
Query: 691 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750
E P Y + + +++ LL+ G+ D R + A+ P+ L F
Sbjct: 563 EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEG 622
Query: 751 ERHMPRR 757
E H RR
Sbjct: 623 EGHGFRR 629
>pdb|3TYU|A Chain A, Crystal Structure Of Dihydropteroate Synthetase With
Product1
pdb|3TYU|B Chain B, Crystal Structure Of Dihydropteroate Synthetase With
Product1
pdb|3TYZ|A Chain A, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthetase With Substrate Transition State Complex.
pdb|3TYZ|B Chain B, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthetase With Substrate Transition State Complex.
pdb|3TZF|A Chain A, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase With Sulfonamide Drug Complex.
pdb|3TZF|B Chain B, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase With Sulfonamide Drug Complex.
pdb|3TZN|A Chain A, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase.
pdb|3TZN|B Chain B, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase
Length = 280
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 190 CELHVLNLLINEQRQLTHGAN-----GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAF 244
C ++ L + QR L+ GA G + G AE QEE+DR +L +F +
Sbjct: 36 CHNNLDQALQHAQRMLSAGATLIDIGGESTRPGAAEVSEQEELDRVVPVVEALAQRFDVW 95
Query: 245 TQVDSSE 251
VD+S+
Sbjct: 96 LSVDTSK 102
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFH 483
L+G ++ HL +L DW+ + PVK+ GK D FV+F+
Sbjct: 229 LEGKIKPHLMSQELPEDWD---KQPVKVLVGKNFEDVAFDEKKNVFVEFY 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,517,338
Number of Sequences: 62578
Number of extensions: 1059868
Number of successful extensions: 2321
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2150
Number of HSP's gapped (non-prelim): 45
length of query: 776
length of database: 14,973,337
effective HSP length: 106
effective length of query: 670
effective length of database: 8,340,069
effective search space: 5587846230
effective search space used: 5587846230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)