Query 004067
Match_columns 776
No_of_seqs 429 out of 4396
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 16:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2281 Dipeptidyl aminopeptid 100.0 2E-62 4.4E-67 494.1 47.5 667 96-775 122-867 (867)
2 KOG2100 Dipeptidyl aminopeptid 100.0 4.6E-49 1E-53 439.4 63.8 623 131-776 103-748 (755)
3 COG1506 DAP2 Dipeptidyl aminop 100.0 3E-43 6.5E-48 392.0 54.5 572 126-776 14-617 (620)
4 PRK10115 protease 2; Provision 100.0 2.4E-40 5.2E-45 369.9 55.4 513 172-775 129-675 (686)
5 PF00930 DPPIV_N: Dipeptidyl p 100.0 3.1E-40 6.7E-45 345.2 34.0 339 136-490 1-353 (353)
6 COG1770 PtrB Protease II [Amin 100.0 8.9E-27 1.9E-31 241.1 46.0 512 172-774 131-677 (682)
7 PF00326 Peptidase_S9: Prolyl 100.0 1.8E-28 3.9E-33 238.9 15.1 198 579-776 5-210 (213)
8 COG1505 Serine proteases of th 99.9 2E-23 4.3E-28 213.4 34.8 293 470-776 345-647 (648)
9 PRK03629 tolB translocation pr 99.9 2.2E-23 4.8E-28 223.6 29.5 255 67-423 164-427 (429)
10 PRK01029 tolB translocation pr 99.9 1.9E-23 4.1E-28 222.9 28.7 265 59-425 141-426 (428)
11 KOG2237 Predicted serine prote 99.9 2.7E-22 5.9E-27 205.9 35.3 295 473-775 390-705 (712)
12 PRK05137 tolB translocation pr 99.9 4.5E-23 9.8E-28 222.9 29.1 255 66-423 165-432 (435)
13 PRK01029 tolB translocation pr 99.9 3.4E-23 7.4E-28 220.9 26.2 210 58-358 188-414 (428)
14 PRK04043 tolB translocation pr 99.9 1.1E-22 2.3E-27 215.3 26.7 210 58-356 191-409 (419)
15 PRK04922 tolB translocation pr 99.9 1.4E-22 3E-27 218.7 27.4 256 66-423 167-432 (433)
16 PRK02889 tolB translocation pr 99.9 2.1E-22 4.5E-27 216.5 28.1 253 67-423 164-424 (427)
17 PRK04043 tolB translocation pr 99.9 1.9E-22 4.1E-27 213.3 27.1 243 67-412 155-411 (419)
18 PRK04792 tolB translocation pr 99.9 2.7E-22 5.8E-27 216.0 28.6 255 67-423 183-446 (448)
19 PRK03629 tolB translocation pr 99.9 5E-22 1.1E-26 213.1 27.9 244 148-474 179-427 (429)
20 PRK05137 tolB translocation pr 99.9 6.3E-22 1.4E-26 214.0 28.3 246 148-474 182-432 (435)
21 PRK00178 tolB translocation pr 99.9 1.3E-21 2.9E-26 212.2 29.5 257 65-423 161-427 (430)
22 PRK13604 luxD acyl transferase 99.9 7E-22 1.5E-26 193.9 21.7 213 524-756 9-246 (307)
23 PRK04792 tolB translocation pr 99.9 5.4E-21 1.2E-25 205.9 29.1 244 148-474 198-446 (448)
24 PRK02889 tolB translocation pr 99.9 7.1E-21 1.5E-25 204.6 28.7 244 148-474 176-424 (427)
25 PRK04922 tolB translocation pr 99.9 5.1E-21 1.1E-25 206.6 27.3 244 148-474 184-432 (433)
26 PRK10566 esterase; Provisional 99.9 2.7E-21 5.9E-26 193.9 20.3 225 537-776 12-249 (249)
27 PRK01742 tolB translocation pr 99.9 1.1E-20 2.3E-25 203.6 26.1 249 66-423 168-425 (429)
28 PRK00178 tolB translocation pr 99.9 2E-20 4.3E-25 203.0 27.8 243 149-474 180-427 (430)
29 PLN02298 hydrolase, alpha/beta 99.9 9.8E-21 2.1E-25 198.0 23.7 241 522-776 30-318 (330)
30 KOG1455 Lysophospholipase [Lip 99.9 3.9E-21 8.5E-26 181.9 16.6 242 520-775 23-312 (313)
31 PHA02857 monoglyceride lipase; 99.9 1.6E-20 3.4E-25 191.6 21.6 227 529-775 5-273 (276)
32 PRK05077 frsA fermentation/res 99.9 3.2E-20 6.9E-25 196.7 22.1 229 523-776 167-413 (414)
33 PLN02385 hydrolase; alpha/beta 99.9 3.4E-20 7.4E-25 195.0 21.2 238 524-776 61-346 (349)
34 PRK01742 tolB translocation pr 99.9 1.7E-19 3.6E-24 194.3 26.9 238 148-475 184-426 (429)
35 PRK10749 lysophospholipase L2; 99.9 5E-20 1.1E-24 191.8 21.7 239 522-775 28-329 (330)
36 TIGR02800 propeller_TolB tol-p 99.8 5E-19 1.1E-23 192.1 28.7 249 63-412 152-408 (417)
37 COG1647 Esterase/lipase [Gener 99.8 3.7E-20 8E-25 166.0 14.5 202 555-774 16-243 (243)
38 PLN02442 S-formylglutathione h 99.8 3.5E-19 7.5E-24 180.0 20.5 242 523-775 17-280 (283)
39 PF01738 DLH: Dienelactone hyd 99.8 2.1E-19 4.6E-24 175.4 18.4 204 537-776 1-218 (218)
40 PLN02652 hydrolase; alpha/beta 99.8 7.9E-19 1.7E-23 184.3 22.4 234 524-776 110-388 (395)
41 TIGR02821 fghA_ester_D S-formy 99.8 1.3E-18 2.9E-23 175.6 23.0 241 524-776 13-275 (275)
42 PF00930 DPPIV_N: Dipeptidyl p 99.8 1.2E-17 2.7E-22 174.9 27.5 283 63-434 1-348 (353)
43 COG2267 PldB Lysophospholipase 99.8 2.7E-18 5.8E-23 173.2 19.9 235 524-776 9-295 (298)
44 COG0412 Dienelactone hydrolase 99.8 9.4E-18 2E-22 162.8 21.7 215 524-776 2-234 (236)
45 KOG4391 Predicted alpha/beta h 99.8 1.1E-18 2.5E-23 154.6 12.5 231 517-775 48-282 (300)
46 KOG1552 Predicted alpha/beta h 99.8 5.5E-18 1.2E-22 157.6 17.3 218 523-774 34-251 (258)
47 COG0823 TolB Periplasmic compo 99.8 3E-17 6.6E-22 172.0 24.5 240 69-409 160-410 (425)
48 PF05448 AXE1: Acetyl xylan es 99.8 2E-18 4.3E-23 174.8 14.9 234 523-775 55-320 (320)
49 TIGR02800 propeller_TolB tol-p 99.8 6.9E-17 1.5E-21 175.3 27.7 247 179-507 153-405 (417)
50 COG0823 TolB Periplasmic compo 99.8 1.9E-17 4E-22 173.5 20.0 205 57-353 195-408 (425)
51 COG4946 Uncharacterized protei 99.8 1.6E-15 3.5E-20 149.4 32.0 230 176-486 273-510 (668)
52 PRK10162 acetyl esterase; Prov 99.8 7.8E-17 1.7E-21 165.9 23.5 228 524-776 57-316 (318)
53 KOG0271 Notchless-like WD40 re 99.8 3.2E-16 7E-21 150.2 25.2 303 57-482 118-469 (480)
54 TIGR01840 esterase_phb esteras 99.7 3.5E-17 7.5E-22 158.7 15.5 191 539-739 1-197 (212)
55 PRK00870 haloalkane dehalogena 99.7 1.9E-16 4.1E-21 163.5 22.0 235 515-775 13-301 (302)
56 PRK05371 x-prolyl-dipeptidyl a 99.7 5.4E-16 1.2E-20 175.2 26.1 191 580-776 271-520 (767)
57 PRK11460 putative hydrolase; P 99.7 2.6E-16 5.7E-21 154.0 20.4 185 552-776 14-209 (232)
58 COG4946 Uncharacterized protei 99.7 3.1E-15 6.8E-20 147.4 27.4 260 66-434 235-509 (668)
59 PLN02824 hydrolase, alpha/beta 99.7 1.6E-16 3.4E-21 163.6 19.3 219 533-775 16-294 (294)
60 TIGR03343 biphenyl_bphD 2-hydr 99.7 1.7E-16 3.6E-21 162.7 19.3 201 555-773 31-281 (282)
61 PLN02511 hydrolase 99.7 1.5E-16 3.3E-21 168.3 19.3 236 523-775 70-365 (388)
62 PRK10985 putative hydrolase; P 99.7 2.9E-16 6.2E-21 163.0 21.0 235 523-775 30-320 (324)
63 TIGR03611 RutD pyrimidine util 99.7 1.4E-16 3E-21 160.8 17.9 199 553-773 12-256 (257)
64 TIGR01607 PST-A Plasmodium sub 99.7 1.8E-16 4E-21 164.2 18.6 236 529-773 2-331 (332)
65 TIGR02240 PHA_depoly_arom poly 99.7 3.8E-16 8.2E-21 159.0 20.2 213 533-775 10-266 (276)
66 PF14583 Pectate_lyase22: Olig 99.7 6.3E-15 1.4E-19 147.2 27.5 300 58-447 39-382 (386)
67 TIGR03056 bchO_mg_che_rel puta 99.7 7.3E-16 1.6E-20 157.7 20.7 216 529-773 10-278 (278)
68 TIGR03100 hydr1_PEP hydrolase, 99.7 8.6E-16 1.9E-20 155.1 20.5 231 525-774 3-274 (274)
69 PLN02965 Probable pheophorbida 99.7 7.8E-16 1.7E-20 154.6 19.6 198 556-774 5-252 (255)
70 PRK03592 haloalkane dehalogena 99.7 8.5E-16 1.8E-20 158.2 20.3 212 533-775 15-289 (295)
71 PLN03087 BODYGUARD 1 domain co 99.7 6E-16 1.3E-20 164.4 19.2 224 528-774 179-478 (481)
72 TIGR02427 protocat_pcaD 3-oxoa 99.7 2.2E-16 4.8E-21 158.6 15.0 198 553-773 12-251 (251)
73 COG3458 Acetyl esterase (deace 99.7 2.5E-16 5.3E-21 145.6 13.5 216 524-755 56-301 (321)
74 KOG0293 WD40 repeat-containing 99.7 2.5E-15 5.4E-20 145.6 20.5 282 56-446 226-513 (519)
75 KOG0271 Notchless-like WD40 re 99.7 1.8E-15 3.8E-20 145.2 19.0 285 57-429 160-467 (480)
76 PRK10673 acyl-CoA esterase; Pr 99.7 6.1E-16 1.3E-20 155.9 16.7 200 552-775 14-255 (255)
77 PF12695 Abhydrolase_5: Alpha/ 99.7 7.2E-16 1.6E-20 140.4 15.6 145 556-754 1-145 (145)
78 PLN02679 hydrolase, alpha/beta 99.7 2.7E-15 5.8E-20 157.9 21.3 218 536-774 73-356 (360)
79 TIGR01250 pro_imino_pep_2 prol 99.7 1.6E-15 3.4E-20 156.0 18.9 201 554-773 25-288 (288)
80 KOG4178 Soluble epoxide hydrol 99.7 5E-15 1.1E-19 143.5 19.5 219 532-775 29-320 (322)
81 TIGR00976 /NonD putative hydro 99.7 4.6E-15 9.9E-20 164.9 22.0 133 530-675 2-134 (550)
82 PF14583 Pectate_lyase22: Olig 99.7 4E-14 8.6E-19 141.5 25.8 309 129-499 40-384 (386)
83 TIGR01249 pro_imino_pep_1 prol 99.7 3.4E-15 7.4E-20 154.1 18.0 219 527-776 7-306 (306)
84 PRK10349 carboxylesterase BioH 99.6 2.8E-15 6.1E-20 151.0 16.6 191 555-773 14-254 (256)
85 PF02129 Peptidase_S15: X-Pro 99.6 2.2E-15 4.7E-20 152.1 15.6 212 533-754 1-271 (272)
86 KOG4409 Predicted hydrolase/ac 99.6 8.5E-15 1.8E-19 142.0 18.5 221 532-775 73-364 (365)
87 PLN02872 triacylglycerol lipas 99.6 2.2E-15 4.9E-20 157.4 15.8 249 516-775 37-389 (395)
88 COG0429 Predicted hydrolase of 99.6 6.5E-15 1.4E-19 142.0 17.4 232 523-775 48-340 (345)
89 PRK06489 hypothetical protein; 99.6 6.4E-15 1.4E-19 155.5 19.1 230 532-775 47-357 (360)
90 PF02230 Abhydrolase_2: Phosph 99.6 7.5E-15 1.6E-19 142.7 17.8 189 552-776 12-216 (216)
91 PF12715 Abhydrolase_7: Abhydr 99.6 7.7E-16 1.7E-20 152.8 10.8 221 523-750 87-343 (390)
92 PRK07581 hypothetical protein; 99.6 4.4E-15 9.6E-20 155.9 17.1 229 533-776 24-337 (339)
93 COG2945 Predicted hydrolase of 99.6 1.2E-14 2.6E-19 127.8 16.7 202 524-773 4-205 (210)
94 PLN02894 hydrolase, alpha/beta 99.6 1.3E-14 2.9E-19 154.1 20.7 205 553-776 104-386 (402)
95 TIGR03695 menH_SHCHC 2-succiny 99.6 7.7E-15 1.7E-19 147.2 17.8 197 555-773 2-251 (251)
96 PF06500 DUF1100: Alpha/beta h 99.6 4.9E-15 1.1E-19 150.2 16.1 227 522-776 163-410 (411)
97 PLN02578 hydrolase 99.6 9.4E-15 2E-19 153.7 18.8 195 555-773 87-353 (354)
98 TIGR01738 bioH putative pimelo 99.6 5.7E-15 1.2E-19 147.7 16.5 190 555-772 5-245 (245)
99 PRK14875 acetoin dehydrogenase 99.6 8.6E-15 1.9E-19 156.5 18.3 195 554-774 131-370 (371)
100 TIGR01392 homoserO_Ac_trn homo 99.6 1.1E-14 2.4E-19 153.2 18.6 234 533-773 14-351 (351)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.1E-12 2.4E-17 135.7 33.3 284 81-474 11-300 (300)
102 PRK03204 haloalkane dehalogena 99.6 3.3E-14 7.2E-19 144.9 20.4 214 527-772 17-285 (286)
103 COG0657 Aes Esterase/lipase [L 99.6 4.1E-14 8.9E-19 146.4 20.3 223 531-774 58-309 (312)
104 PF12697 Abhydrolase_6: Alpha/ 99.6 1.8E-15 4E-20 149.3 9.6 187 557-764 1-225 (228)
105 KOG0272 U4/U6 small nuclear ri 99.6 1.2E-13 2.6E-18 134.7 21.1 275 57-444 178-458 (459)
106 PRK11126 2-succinyl-6-hydroxy- 99.6 1.4E-14 2.9E-19 144.8 14.9 189 555-774 3-241 (242)
107 PRK11071 esterase YqiA; Provis 99.6 2E-14 4.3E-19 135.7 14.8 178 555-773 2-189 (190)
108 PLN00021 chlorophyllase 99.6 9.8E-14 2.1E-18 140.7 20.8 182 535-755 37-241 (313)
109 PRK00175 metX homoserine O-ace 99.6 5.6E-14 1.2E-18 148.9 19.8 236 533-775 31-374 (379)
110 KOG0279 G protein beta subunit 99.6 1.6E-12 3.4E-17 120.4 26.2 280 56-446 17-313 (315)
111 PF10503 Esterase_phd: Esteras 99.6 3.9E-14 8.5E-19 134.0 16.0 193 537-739 1-198 (220)
112 TIGR03101 hydr2_PEP hydrolase, 99.6 6.5E-14 1.4E-18 137.8 17.1 211 526-751 2-243 (266)
113 cd00200 WD40 WD40 domain, foun 99.6 2.5E-12 5.3E-17 131.5 29.8 272 57-443 12-288 (289)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 5.3E-12 1.2E-16 130.6 32.5 269 146-507 9-288 (300)
115 PRK08775 homoserine O-acetyltr 99.6 2.3E-14 4.9E-19 150.4 14.6 176 583-774 94-338 (343)
116 PLN03084 alpha/beta hydrolase 99.6 9.6E-14 2.1E-18 145.0 18.7 216 532-774 112-383 (383)
117 KOG1838 Alpha/beta hydrolase [ 99.6 2.1E-13 4.5E-18 137.2 20.0 239 521-774 90-387 (409)
118 KOG1454 Predicted hydrolase/ac 99.6 1.3E-13 2.9E-18 140.6 19.0 204 552-775 56-324 (326)
119 TIGR01836 PHA_synth_III_C poly 99.6 1.4E-13 2.9E-18 144.8 18.5 223 537-775 48-350 (350)
120 KOG1515 Arylacetamide deacetyl 99.5 1.2E-12 2.7E-17 131.5 23.8 227 533-775 70-335 (336)
121 KOG0318 WD40 repeat stress pro 99.5 3.6E-11 7.8E-16 120.8 33.6 325 57-502 193-521 (603)
122 PLN02211 methyl indole-3-aceta 99.5 7.4E-13 1.6E-17 133.6 21.4 200 553-773 17-268 (273)
123 KOG0266 WD40 repeat-containing 99.5 3.7E-12 7.9E-17 137.9 28.1 281 57-446 162-454 (456)
124 COG0400 Predicted esterase [Ge 99.5 2.9E-13 6.3E-18 126.5 16.8 125 619-775 80-205 (207)
125 PRK06765 homoserine O-acetyltr 99.5 6.5E-13 1.4E-17 139.1 18.5 235 534-775 40-388 (389)
126 COG4099 Predicted peptidase [G 99.5 1.7E-13 3.7E-18 128.2 12.2 187 526-749 162-354 (387)
127 KOG0296 Angio-associated migra 99.5 1.2E-10 2.6E-15 112.1 30.3 312 57-484 67-388 (399)
128 PF07859 Abhydrolase_3: alpha/ 99.5 1.1E-13 2.3E-18 134.9 10.0 178 557-755 1-209 (211)
129 KOG0279 G protein beta subunit 99.5 1.1E-10 2.4E-15 108.4 28.5 268 126-485 17-304 (315)
130 KOG0318 WD40 repeat stress pro 99.5 5.4E-10 1.2E-14 112.5 35.1 288 62-447 26-349 (603)
131 KOG0291 WD40-repeat-containing 99.5 1.2E-09 2.6E-14 114.8 38.5 234 270-546 353-594 (893)
132 cd00200 WD40 WD40 domain, foun 99.5 1.4E-10 3.1E-15 118.3 31.1 267 124-484 9-281 (289)
133 PF08840 BAAT_C: BAAT / Acyl-C 99.4 1.5E-12 3.2E-17 125.0 14.6 157 619-776 3-211 (213)
134 KOG3043 Predicted hydrolase re 99.4 2.8E-12 6.2E-17 116.0 14.9 169 578-776 57-241 (242)
135 KOG4667 Predicted esterase [Li 99.4 2E-12 4.3E-17 115.5 13.7 212 523-758 9-243 (269)
136 PLN02980 2-oxoglutarate decarb 99.4 2.8E-12 6.1E-17 157.8 19.7 211 553-775 1370-1639(1655)
137 KOG0272 U4/U6 small nuclear ri 99.4 8.7E-12 1.9E-16 121.9 18.9 265 125-483 176-449 (459)
138 KOG0286 G-protein beta subunit 99.4 1.7E-10 3.7E-15 107.7 26.3 276 57-443 58-342 (343)
139 KOG1446 Histone H3 (Lys4) meth 99.4 4.2E-10 9.2E-15 106.7 28.3 281 55-447 15-304 (311)
140 KOG0315 G-protein beta subunit 99.4 1.5E-10 3.3E-15 105.6 23.1 268 146-505 18-295 (311)
141 PF02897 Peptidase_S9_N: Proly 99.4 4.6E-10 1E-14 121.4 31.8 261 173-502 127-408 (414)
142 KOG0315 G-protein beta subunit 99.4 1.4E-10 3.1E-15 105.7 22.8 250 57-410 43-298 (311)
143 PRK05855 short chain dehydroge 99.4 5.4E-12 1.2E-16 143.8 16.7 216 531-774 9-291 (582)
144 KOG0273 Beta-transducin family 99.4 4.1E-10 8.9E-15 111.9 26.6 265 57-435 238-515 (524)
145 KOG0291 WD40-repeat-containing 99.4 5.9E-09 1.3E-13 109.7 36.3 327 125-541 308-660 (893)
146 KOG2984 Predicted hydrolase [G 99.4 5.3E-13 1.1E-17 117.6 5.7 217 533-775 29-276 (277)
147 COG2706 3-carboxymuconate cycl 99.4 4E-09 8.6E-14 102.5 32.2 275 56-410 41-332 (346)
148 KOG0273 Beta-transducin family 99.4 6.4E-10 1.4E-14 110.6 26.8 282 125-497 236-522 (524)
149 KOG0266 WD40 repeat-containing 99.4 2.7E-10 5.9E-15 123.4 26.5 273 125-488 160-446 (456)
150 COG2936 Predicted acyl esteras 99.3 2.9E-11 6.3E-16 127.3 17.8 216 523-755 18-292 (563)
151 KOG0296 Angio-associated migra 99.3 7.4E-10 1.6E-14 106.7 24.8 285 57-445 109-397 (399)
152 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.2E-09 1.8E-13 104.9 33.5 285 138-506 11-338 (352)
153 KOG0286 G-protein beta subunit 99.3 2E-09 4.3E-14 100.8 26.4 267 125-484 56-335 (343)
154 PRK10439 enterobactin/ferric e 99.3 1.6E-10 3.4E-15 121.9 21.2 203 523-755 179-392 (411)
155 TIGR01838 PHA_synth_I poly(R)- 99.3 3.8E-11 8.3E-16 129.2 16.7 203 536-755 173-456 (532)
156 KOG0293 WD40 repeat-containing 99.3 4.6E-10 9.9E-15 109.6 21.7 278 125-497 225-512 (519)
157 PF10282 Lactonase: Lactonase, 99.3 6E-09 1.3E-13 109.1 32.0 273 54-409 36-332 (345)
158 COG3509 LpqC Poly(3-hydroxybut 99.3 1.4E-10 3.1E-15 110.2 17.3 142 524-673 35-179 (312)
159 COG4757 Predicted alpha/beta h 99.3 3.2E-11 6.9E-16 109.3 12.0 229 527-772 8-280 (281)
160 PF12740 Chlorophyllase2: Chlo 99.3 1.3E-10 2.8E-15 111.2 16.7 179 537-754 4-205 (259)
161 PRK11028 6-phosphogluconolacto 99.3 1.1E-08 2.4E-13 107.0 32.5 220 56-353 36-266 (330)
162 KOG2055 WD40 repeat protein [G 99.3 2.1E-09 4.5E-14 106.7 23.6 279 125-484 214-502 (514)
163 PF08662 eIF2A: Eukaryotic tra 99.3 4.4E-10 9.6E-15 106.2 18.3 155 128-349 9-181 (194)
164 PF02239 Cytochrom_D1: Cytochr 99.2 1.6E-08 3.4E-13 105.6 31.4 331 68-507 6-356 (369)
165 KOG2564 Predicted acetyltransf 99.2 6.8E-11 1.5E-15 110.4 12.1 118 523-659 49-167 (343)
166 PLN00181 protein SPA1-RELATED; 99.2 1E-08 2.2E-13 120.1 33.7 281 57-445 486-792 (793)
167 KOG0305 Anaphase promoting com 99.2 2E-09 4.4E-14 112.0 23.6 268 129-485 182-452 (484)
168 KOG1407 WD40 repeat protein [F 99.2 1.9E-08 4E-13 92.9 26.8 270 125-487 21-295 (313)
169 KOG3101 Esterase D [General fu 99.2 5E-11 1.1E-15 106.0 9.7 216 534-757 25-264 (283)
170 PF00561 Abhydrolase_1: alpha/ 99.2 8.8E-12 1.9E-16 123.3 5.4 169 589-768 1-228 (230)
171 KOG0973 Histone transcription 99.2 3.9E-09 8.4E-14 116.0 25.2 247 125-434 70-346 (942)
172 PF00756 Esterase: Putative es 99.2 2.7E-11 5.9E-16 121.4 7.8 206 534-755 5-237 (251)
173 KOG2382 Predicted alpha/beta h 99.2 2.1E-10 4.5E-15 111.8 13.0 205 552-775 50-313 (315)
174 PRK11028 6-phosphogluconolacto 99.2 8.2E-08 1.8E-12 100.5 33.2 243 126-447 36-305 (330)
175 KOG0263 Transcription initiati 99.2 4.1E-10 8.8E-15 119.3 15.2 258 57-401 381-649 (707)
176 KOG4627 Kynurenine formamidase 99.2 1.5E-10 3.3E-15 102.6 9.9 212 514-754 35-247 (270)
177 KOG4497 Uncharacterized conser 99.2 3.3E-09 7.2E-14 100.7 19.3 346 59-482 13-420 (447)
178 PLN00181 protein SPA1-RELATED; 99.2 4.3E-08 9.2E-13 115.0 33.1 277 125-497 484-792 (793)
179 PF03403 PAF-AH_p_II: Platelet 99.1 4E-10 8.6E-15 117.5 13.7 189 552-776 98-359 (379)
180 PTZ00420 coronin; Provisional 99.1 8.2E-08 1.8E-12 104.4 31.7 249 60-410 32-302 (568)
181 PTZ00421 coronin; Provisional 99.1 3E-08 6.5E-13 107.2 27.8 162 125-350 76-248 (493)
182 KOG0275 Conserved WD40 repeat- 99.1 1E-09 2.2E-14 103.6 14.3 265 57-418 216-485 (508)
183 PTZ00421 coronin; Provisional 99.1 1.9E-08 4.2E-13 108.7 26.3 207 57-354 78-297 (493)
184 KOG1446 Histone H3 (Lys4) meth 99.1 1.2E-07 2.5E-12 90.4 27.7 245 171-507 16-271 (311)
185 PF08662 eIF2A: Eukaryotic tra 99.1 3.4E-09 7.3E-14 100.2 17.6 141 58-247 9-163 (194)
186 KOG2314 Translation initiation 99.1 7.3E-08 1.6E-12 98.1 27.2 320 58-485 214-558 (698)
187 PF05728 UPF0227: Uncharacteri 99.1 2.9E-09 6.3E-14 98.7 15.6 177 557-772 2-186 (187)
188 KOG0973 Histone transcription 99.1 1E-09 2.2E-14 120.4 14.6 252 58-350 73-358 (942)
189 KOG0284 Polyadenylation factor 99.1 2.8E-09 6.2E-14 104.1 15.8 277 57-447 99-381 (464)
190 KOG0263 Transcription initiati 99.1 4.5E-09 9.7E-14 111.5 17.6 195 57-348 454-650 (707)
191 COG2021 MET2 Homoserine acetyl 99.1 1.9E-09 4.2E-14 106.6 13.7 244 521-774 19-367 (368)
192 PRK07868 acyl-CoA synthetase; 99.1 2.4E-09 5.2E-14 127.8 17.5 221 536-775 48-361 (994)
193 KOG0305 Anaphase promoting com 99.1 4.9E-08 1.1E-12 101.8 24.1 291 40-447 162-462 (484)
194 PF02273 Acyl_transf_2: Acyl t 99.1 1.6E-08 3.5E-13 93.0 18.0 211 526-756 4-239 (294)
195 PTZ00420 coronin; Provisional 99.0 6.1E-08 1.3E-12 105.4 25.3 217 57-356 77-302 (568)
196 PF03583 LIP: Secretory lipase 99.0 6.8E-09 1.5E-13 104.7 16.6 186 580-775 18-281 (290)
197 KOG0645 WD40 repeat protein [G 99.0 5.6E-07 1.2E-11 83.8 27.3 277 57-446 17-311 (312)
198 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.4E-06 3.1E-11 88.8 32.2 112 65-205 11-143 (352)
199 PF08538 DUF1749: Protein of u 99.0 3.3E-09 7.1E-14 103.6 12.6 207 555-773 34-303 (303)
200 PRK13616 lipoprotein LpqB; Pro 99.0 9.2E-09 2E-13 113.1 17.5 145 56-246 351-514 (591)
201 PF10282 Lactonase: Lactonase, 99.0 1.8E-07 3.9E-12 97.9 26.6 290 148-502 13-328 (345)
202 KOG0306 WD40-repeat-containing 99.0 1E-07 2.2E-12 100.6 24.0 278 57-446 376-664 (888)
203 KOG2055 WD40 repeat protein [G 99.0 9.8E-08 2.1E-12 95.1 22.6 283 56-446 215-512 (514)
204 KOG0772 Uncharacterized conser 99.0 5.7E-08 1.2E-12 98.0 21.0 283 57-434 170-478 (641)
205 PRK10115 protease 2; Provision 99.0 7.1E-07 1.5E-11 101.3 32.8 289 64-448 79-394 (686)
206 KOG0275 Conserved WD40 repeat- 99.0 4.8E-09 1E-13 99.2 12.3 238 128-448 217-467 (508)
207 KOG0265 U5 snRNP-specific prot 99.0 2.7E-07 5.9E-12 87.1 23.5 267 57-433 50-328 (338)
208 COG4188 Predicted dienelactone 99.0 4.4E-09 9.5E-14 104.5 12.2 222 524-755 38-295 (365)
209 PF06342 DUF1057: Alpha/beta h 99.0 3.1E-08 6.7E-13 94.3 17.3 128 527-672 9-136 (297)
210 TIGR01839 PHA_synth_II poly(R) 99.0 1.2E-08 2.5E-13 108.6 15.9 200 537-754 201-481 (560)
211 KOG0295 WD40 repeat-containing 99.0 1.4E-07 3.1E-12 91.3 21.5 244 126-447 110-365 (406)
212 KOG3847 Phospholipase A2 (plat 99.0 1.3E-08 2.8E-13 96.8 13.9 189 552-776 116-372 (399)
213 KOG1407 WD40 repeat protein [F 98.9 2.8E-07 6.1E-12 85.3 21.4 269 57-436 23-295 (313)
214 KOG0282 mRNA splicing factor [ 98.9 2.1E-08 4.6E-13 100.4 15.0 276 57-443 217-502 (503)
215 KOG2624 Triglyceride lipase-ch 98.9 2.6E-08 5.7E-13 102.7 16.3 246 515-775 40-398 (403)
216 PF06821 Ser_hydrolase: Serine 98.9 2E-08 4.3E-13 92.2 13.7 153 557-755 1-154 (171)
217 PF07224 Chlorophyllase: Chlor 98.9 1.9E-08 4.1E-13 93.7 13.4 181 535-754 31-230 (307)
218 COG2706 3-carboxymuconate cycl 98.9 2.2E-06 4.9E-11 83.8 28.1 292 147-502 15-327 (346)
219 PRK13616 lipoprotein LpqB; Pro 98.9 1.6E-07 3.4E-12 103.5 22.7 175 171-411 351-537 (591)
220 COG0627 Predicted esterase [Ge 98.9 1.5E-08 3.2E-13 101.7 13.5 214 552-775 52-311 (316)
221 KOG2112 Lysophospholipase [Lip 98.9 5.6E-08 1.2E-12 88.3 15.5 126 623-774 75-203 (206)
222 COG3571 Predicted hydrolase of 98.9 1.1E-07 2.5E-12 81.1 15.9 167 553-755 13-182 (213)
223 KOG4497 Uncharacterized conser 98.9 7.7E-07 1.7E-11 85.0 22.4 319 57-432 51-421 (447)
224 KOG2096 WD40 repeat protein [G 98.9 1.5E-07 3.2E-12 89.4 17.5 163 146-332 207-392 (420)
225 KOG0643 Translation initiation 98.9 5.6E-07 1.2E-11 83.6 20.7 197 57-351 13-224 (327)
226 PF02897 Peptidase_S9_N: Proly 98.9 1.4E-06 3E-11 94.4 27.2 295 63-448 75-404 (414)
227 COG2819 Predicted hydrolase of 98.9 2.6E-07 5.6E-12 88.1 18.6 221 523-773 8-259 (264)
228 KOG0772 Uncharacterized conser 98.8 1.9E-07 4.1E-12 94.3 17.9 275 126-506 169-453 (641)
229 COG2382 Fes Enterochelin ester 98.8 9.7E-08 2.1E-12 92.1 15.1 206 525-756 70-282 (299)
230 cd00707 Pancreat_lipase_like P 98.8 1.9E-08 4.1E-13 100.9 10.7 113 553-674 35-148 (275)
231 COG0596 MhpC Predicted hydrola 98.8 1.7E-07 3.7E-12 94.6 17.4 194 555-772 22-279 (282)
232 KOG2096 WD40 repeat protein [G 98.8 1.4E-06 3E-11 83.0 20.8 283 122-484 84-393 (420)
233 PF08450 SGL: SMP-30/Gluconola 98.8 1.9E-06 4.1E-11 85.9 23.3 233 129-433 4-245 (246)
234 PF09752 DUF2048: Uncharacteri 98.8 9.2E-08 2E-12 95.0 13.3 222 537-773 77-347 (348)
235 cd00312 Esterase_lipase Estera 98.8 1.8E-08 3.9E-13 111.7 9.3 128 537-674 79-214 (493)
236 KOG0319 WD40-repeat-containing 98.8 7.8E-06 1.7E-10 86.7 27.6 328 57-507 195-544 (775)
237 KOG0319 WD40-repeat-containing 98.8 2.4E-06 5.2E-11 90.4 23.6 328 59-502 24-358 (775)
238 PF06433 Me-amine-dh_H: Methyl 98.8 3.8E-05 8.2E-10 76.4 30.6 283 148-507 17-329 (342)
239 KOG1274 WD40 repeat protein [G 98.7 4.7E-06 1E-10 90.5 25.7 267 58-433 17-290 (933)
240 KOG0306 WD40-repeat-containing 98.7 1.3E-05 2.9E-10 85.1 28.3 284 126-497 375-663 (888)
241 TIGR03230 lipo_lipase lipoprot 98.7 5.3E-08 1.1E-12 101.9 10.8 113 553-673 40-154 (442)
242 KOG1539 WD repeat protein [Gen 98.7 5E-05 1.1E-09 81.9 32.6 343 81-497 224-647 (910)
243 KOG2315 Predicted translation 98.7 2.5E-05 5.4E-10 80.5 29.3 314 58-485 38-375 (566)
244 KOG0639 Transducin-like enhanc 98.7 1.1E-06 2.4E-11 88.5 18.6 267 123-482 418-692 (705)
245 KOG1274 WD40 repeat protein [G 98.7 9.9E-07 2.1E-11 95.6 19.5 184 80-348 75-263 (933)
246 COG3386 Gluconolactonase [Carb 98.7 5.2E-06 1.1E-10 83.6 23.3 240 129-435 29-277 (307)
247 KOG2919 Guanine nucleotide-bin 98.7 1.9E-06 4.1E-11 82.3 18.7 215 58-348 53-282 (406)
248 KOG0295 WD40 repeat-containing 98.7 2.7E-06 5.9E-11 82.6 19.9 245 171-507 110-373 (406)
249 KOG2314 Translation initiation 98.7 1.4E-05 3E-10 82.0 25.9 295 54-433 249-557 (698)
250 KOG0283 WD40 repeat-containing 98.7 1.9E-06 4.1E-11 92.8 20.7 204 124-403 369-578 (712)
251 PF03959 FSH1: Serine hydrolas 98.7 2.4E-07 5.3E-12 89.3 13.0 171 553-755 3-202 (212)
252 KOG0282 mRNA splicing factor [ 98.7 1.5E-06 3.3E-11 87.5 17.7 278 124-495 214-502 (503)
253 COG3208 GrsT Predicted thioest 98.6 8.9E-07 1.9E-11 82.9 14.9 195 553-773 7-234 (244)
254 COG5354 Uncharacterized protei 98.6 1.5E-05 3.2E-10 81.1 24.3 315 57-485 35-380 (561)
255 KOG0645 WD40 repeat protein [G 98.6 6.3E-05 1.4E-09 70.5 26.4 275 126-496 16-309 (312)
256 PF02239 Cytochrom_D1: Cytochr 98.6 7.7E-05 1.7E-09 78.1 30.9 312 146-543 14-336 (369)
257 COG2272 PnbA Carboxylesterase 98.6 8.3E-08 1.8E-12 98.8 7.9 131 537-674 80-218 (491)
258 PF12146 Hydrolase_4: Putative 98.6 2E-07 4.4E-12 72.9 8.3 58 534-603 1-58 (79)
259 PF08450 SGL: SMP-30/Gluconola 98.6 9.7E-06 2.1E-10 80.8 22.5 196 58-354 3-220 (246)
260 KOG0265 U5 snRNP-specific prot 98.6 6.9E-06 1.5E-10 77.9 19.4 196 230-498 50-246 (338)
261 KOG0640 mRNA cleavage stimulat 98.6 8.5E-06 1.8E-10 77.4 19.9 296 58-446 116-426 (430)
262 KOG2551 Phospholipase/carboxyh 98.6 1.2E-06 2.6E-11 80.2 13.7 185 553-774 4-219 (230)
263 PF07433 DUF1513: Protein of u 98.6 4.8E-05 1E-09 74.8 25.7 222 58-356 8-256 (305)
264 KOG1273 WD40 repeat protein [G 98.6 1.8E-05 4E-10 75.4 21.9 249 58-412 27-291 (405)
265 PRK04940 hypothetical protein; 98.6 1.7E-06 3.6E-11 78.3 14.3 115 638-774 60-179 (180)
266 KOG1538 Uncharacterized conser 98.6 4.1E-06 8.8E-11 87.4 18.9 263 126-486 14-285 (1081)
267 KOG1273 WD40 repeat protein [G 98.6 2.1E-05 4.6E-10 75.1 21.9 251 172-508 26-290 (405)
268 KOG0284 Polyadenylation factor 98.6 2E-06 4.4E-11 84.7 15.6 264 125-481 97-367 (464)
269 KOG1553 Predicted alpha/beta h 98.6 1E-07 2.2E-12 91.7 6.6 183 524-725 214-398 (517)
270 KOG2048 WD40 repeat protein [G 98.6 0.00045 9.8E-09 73.1 33.1 205 58-351 29-237 (691)
271 TIGR03502 lipase_Pla1_cef extr 98.5 4.5E-07 9.8E-12 101.1 11.3 100 553-659 448-576 (792)
272 KOG0639 Transducin-like enhanc 98.5 1.4E-06 3.1E-11 87.7 13.6 181 58-332 469-652 (705)
273 KOG2139 WD40 repeat protein [G 98.5 2.7E-05 5.8E-10 75.8 21.5 101 125-248 196-301 (445)
274 PF06057 VirJ: Bacterial virul 98.5 4.3E-06 9.4E-11 75.7 15.0 183 556-774 4-191 (192)
275 KOG0278 Serine/threonine kinas 98.5 4.2E-06 9.1E-11 77.1 14.9 197 57-352 103-302 (334)
276 COG1506 DAP2 Dipeptidyl aminop 98.5 0.00025 5.4E-09 80.3 32.7 310 41-447 4-343 (620)
277 KOG0310 Conserved WD40 repeat- 98.5 3.4E-05 7.4E-10 78.1 21.7 270 125-485 27-300 (487)
278 KOG0283 WD40 repeat-containing 98.5 3.1E-05 6.8E-10 83.7 22.6 197 228-498 370-576 (712)
279 KOG0299 U3 snoRNP-associated p 98.5 4.4E-05 9.5E-10 76.8 21.8 280 125-493 143-454 (479)
280 KOG2139 WD40 repeat protein [G 98.5 1.2E-05 2.6E-10 78.2 17.2 196 57-346 101-310 (445)
281 PF10230 DUF2305: Uncharacteri 98.4 3.3E-06 7.3E-11 84.1 14.2 192 554-755 2-265 (266)
282 PF05677 DUF818: Chlamydia CHL 98.4 2.6E-05 5.7E-10 76.7 19.5 133 515-659 103-236 (365)
283 KOG0643 Translation initiation 98.4 0.00048 1E-08 64.6 26.3 284 125-497 11-316 (327)
284 COG5354 Uncharacterized protei 98.4 9.5E-05 2.1E-09 75.5 23.6 285 125-499 33-349 (561)
285 TIGR01849 PHB_depoly_PhaZ poly 98.4 5.6E-06 1.2E-10 86.0 15.5 70 706-775 333-406 (406)
286 KOG0285 Pleiotropic regulator 98.4 6.7E-05 1.4E-09 73.0 21.4 260 127-482 154-427 (460)
287 KOG0640 mRNA cleavage stimulat 98.4 1.6E-05 3.4E-10 75.6 16.9 265 163-504 107-389 (430)
288 PF00135 COesterase: Carboxyle 98.4 3.5E-07 7.6E-12 103.1 7.4 129 537-672 109-244 (535)
289 KOG0278 Serine/threonine kinas 98.4 7.8E-06 1.7E-10 75.3 14.4 131 286-447 166-298 (334)
290 PLN02919 haloacid dehalogenase 98.4 0.00021 4.6E-09 85.2 30.6 287 57-405 570-892 (1057)
291 KOG0316 Conserved WD40 repeat- 98.4 6.4E-05 1.4E-09 68.9 19.9 236 57-404 20-260 (307)
292 KOG2106 Uncharacterized conser 98.4 0.00036 7.8E-09 71.1 26.9 272 42-432 236-510 (626)
293 KOG2106 Uncharacterized conser 98.4 0.0024 5.1E-08 65.4 32.6 272 126-498 202-477 (626)
294 KOG0288 WD40 repeat protein Ti 98.4 8.9E-06 1.9E-10 80.4 15.3 228 57-358 178-428 (459)
295 PF11339 DUF3141: Protein of u 98.4 1.3E-05 2.8E-10 82.8 16.6 160 582-754 94-348 (581)
296 KOG0771 Prolactin regulatory e 98.4 6.2E-06 1.3E-10 82.0 13.6 182 58-332 148-343 (398)
297 COG1073 Hydrolases of the alph 98.4 2.5E-06 5.5E-11 87.9 11.8 232 535-776 31-298 (299)
298 KOG0288 WD40 repeat protein Ti 98.4 1.4E-05 3.1E-10 79.0 15.7 212 57-332 222-450 (459)
299 KOG0289 mRNA splicing factor [ 98.4 0.0003 6.5E-09 70.4 24.9 157 125-348 262-420 (506)
300 PF10340 DUF2424: Protein of u 98.4 1.7E-05 3.6E-10 80.7 16.4 202 537-755 106-350 (374)
301 COG3545 Predicted esterase of 98.3 3.8E-05 8.3E-10 67.9 16.3 137 616-774 40-178 (181)
302 PF04762 IKI3: IKI3 family; I 98.3 0.0018 4E-08 75.8 35.2 203 55-351 76-337 (928)
303 KOG0313 Microtubule binding pr 98.3 0.00034 7.4E-09 68.8 24.0 281 58-435 109-409 (423)
304 PF06028 DUF915: Alpha/beta hy 98.3 2.9E-06 6.4E-11 82.7 10.3 206 554-772 11-252 (255)
305 PF11144 DUF2920: Protein of u 98.3 6.1E-05 1.3E-09 76.7 19.1 132 618-749 162-332 (403)
306 PF10647 Gmad1: Lipoprotein Lp 98.3 5.6E-05 1.2E-09 74.9 18.5 149 56-246 25-184 (253)
307 KOG0310 Conserved WD40 repeat- 98.3 7.4E-05 1.6E-09 75.7 18.5 183 57-332 113-298 (487)
308 KOG1445 Tumor-specific antigen 98.3 4.8E-06 1E-10 86.3 10.3 168 125-354 628-805 (1012)
309 KOG1009 Chromatin assembly com 98.3 2.4E-05 5.2E-10 77.3 14.5 120 55-190 66-186 (434)
310 KOG1538 Uncharacterized conser 98.2 0.00013 2.9E-09 76.5 20.1 136 57-247 15-152 (1081)
311 KOG1009 Chromatin assembly com 98.2 0.00051 1.1E-08 68.3 22.7 105 125-249 66-187 (434)
312 KOG1408 WD40 repeat protein [F 98.2 0.00041 9E-09 73.6 23.1 109 57-201 81-197 (1080)
313 PF12048 DUF3530: Protein of u 98.2 0.00014 3E-09 74.1 19.4 221 520-775 58-309 (310)
314 KOG0316 Conserved WD40 repeat- 98.2 0.00021 4.5E-09 65.7 18.1 200 54-352 59-262 (307)
315 PLN02919 haloacid dehalogenase 98.2 0.00079 1.7E-08 80.4 28.5 238 56-351 625-892 (1057)
316 KOG2048 WD40 repeat protein [G 98.2 0.00098 2.1E-08 70.6 24.8 227 125-432 26-264 (691)
317 KOG1445 Tumor-specific antigen 98.2 2.1E-05 4.6E-10 81.8 12.5 158 54-250 627-787 (1012)
318 KOG1539 WD repeat protein [Gen 98.2 7.2E-05 1.6E-09 80.7 16.6 195 56-346 450-647 (910)
319 PF06433 Me-amine-dh_H: Methyl 98.1 0.0062 1.3E-07 61.0 28.9 273 81-448 17-320 (342)
320 KOG2315 Predicted translation 98.1 0.0012 2.7E-08 68.4 24.6 284 127-501 37-347 (566)
321 KOG0647 mRNA export protein (c 98.1 0.0025 5.4E-08 61.1 24.6 82 125-209 28-113 (347)
322 KOG0292 Vesicle coat complex C 98.1 0.0054 1.2E-07 67.3 30.1 312 57-451 54-402 (1202)
323 KOG2110 Uncharacterized conser 98.1 0.00099 2.2E-08 65.5 22.2 154 126-347 89-248 (391)
324 KOG2110 Uncharacterized conser 98.1 0.00093 2E-08 65.7 20.7 117 125-261 130-251 (391)
325 KOG1036 Mitotic spindle checkp 98.1 0.0065 1.4E-07 58.5 25.6 81 125-210 14-95 (323)
326 KOG0641 WD40 repeat protein [G 98.0 0.0057 1.2E-07 55.9 24.0 168 310-507 86-270 (350)
327 KOG1036 Mitotic spindle checkp 98.0 0.0038 8.3E-08 60.1 24.1 109 57-199 16-125 (323)
328 COG3386 Gluconolactonase [Carb 98.0 0.0009 2E-08 67.6 21.4 137 58-247 28-182 (307)
329 COG3150 Predicted esterase [Ge 98.0 0.00012 2.5E-09 63.9 12.1 135 620-773 43-187 (191)
330 COG3243 PhaC Poly(3-hydroxyalk 98.0 9E-05 2E-09 75.0 13.3 88 579-674 130-218 (445)
331 KOG1524 WD40 repeat-containing 98.0 0.00087 1.9E-08 68.9 20.0 170 231-485 108-277 (737)
332 KOG0264 Nucleosome remodeling 98.0 0.00084 1.8E-08 67.7 19.7 164 310-497 224-403 (422)
333 KOG0264 Nucleosome remodeling 98.0 0.0011 2.5E-08 66.8 20.6 200 58-348 128-348 (422)
334 KOG4328 WD40 protein [Function 98.0 0.0011 2.5E-08 66.9 19.7 177 310-510 231-415 (498)
335 KOG0277 Peroxisomal targeting 98.0 0.00058 1.2E-08 63.6 16.3 240 127-447 11-266 (311)
336 KOG0771 Prolactin regulatory e 97.9 0.0002 4.3E-09 71.6 14.1 153 310-485 183-345 (398)
337 KOG0285 Pleiotropic regulator 97.9 0.0035 7.6E-08 61.4 21.8 234 57-403 154-391 (460)
338 KOG0289 mRNA splicing factor [ 97.9 0.0039 8.5E-08 62.7 22.6 267 126-482 221-494 (506)
339 KOG0294 WD40 repeat-containing 97.9 0.0025 5.4E-08 61.5 20.4 225 138-448 52-283 (362)
340 KOG2394 WD40 protein DMR-N9 [G 97.9 0.00033 7.1E-09 72.0 15.3 204 59-332 128-351 (636)
341 KOG0277 Peroxisomal targeting 97.9 0.00059 1.3E-08 63.6 15.5 200 57-349 63-267 (311)
342 KOG0281 Beta-TrCP (transducin 97.9 0.00017 3.8E-09 69.8 12.4 214 77-404 213-431 (499)
343 PF03096 Ndr: Ndr family; Int 97.9 0.00027 5.9E-09 68.9 13.9 227 528-773 3-277 (283)
344 KOG0313 Microtubule binding pr 97.9 0.0027 5.9E-08 62.7 20.5 167 122-358 191-389 (423)
345 PF10142 PhoPQ_related: PhoPQ- 97.9 0.00098 2.1E-08 68.4 18.3 146 620-774 150-319 (367)
346 KOG3253 Predicted alpha/beta h 97.9 0.00018 3.8E-09 75.4 12.9 167 553-756 175-347 (784)
347 PF10647 Gmad1: Lipoprotein Lp 97.8 0.0044 9.5E-08 61.5 22.1 175 171-411 25-207 (253)
348 KOG0299 U3 snoRNP-associated p 97.8 0.0016 3.4E-08 65.9 18.5 124 57-199 145-275 (479)
349 KOG0276 Vesicle coat complex C 97.8 0.014 3E-07 61.7 25.5 238 123-444 12-255 (794)
350 KOG0641 WD40 repeat protein [G 97.8 0.018 3.9E-07 52.7 23.2 208 59-349 94-305 (350)
351 KOG2919 Guanine nucleotide-bin 97.8 0.00054 1.2E-08 66.0 14.1 208 64-357 121-338 (406)
352 KOG0307 Vesicle coat complex C 97.8 0.00032 7E-09 78.7 14.0 244 126-447 66-328 (1049)
353 KOG0294 WD40 repeat-containing 97.8 0.0075 1.6E-07 58.3 21.0 137 62-246 49-187 (362)
354 COG4947 Uncharacterized protei 97.8 4.4E-05 9.6E-10 66.3 5.6 115 627-755 92-216 (227)
355 PF15492 Nbas_N: Neuroblastoma 97.8 0.022 4.7E-07 54.8 23.9 55 175-246 3-62 (282)
356 PF07433 DUF1513: Protein of u 97.8 0.019 4.2E-07 56.8 24.4 192 286-505 29-254 (305)
357 KOG0650 WD40 repeat nucleolar 97.8 0.0032 6.9E-08 65.9 19.6 175 126-351 402-599 (733)
358 PTZ00472 serine carboxypeptida 97.7 0.00029 6.3E-09 76.1 12.7 135 534-674 60-217 (462)
359 COG1770 PtrB Protease II [Amin 97.7 0.094 2E-06 56.9 30.6 290 63-448 82-396 (682)
360 PF07819 PGAP1: PGAP1-like pro 97.7 0.00022 4.8E-09 69.0 10.4 100 555-670 5-120 (225)
361 PF01674 Lipase_2: Lipase (cla 97.7 0.00011 2.4E-09 69.9 7.9 90 556-658 3-95 (219)
362 COG4814 Uncharacterized protei 97.7 0.00095 2.1E-08 62.6 13.5 151 619-774 119-286 (288)
363 KOG0274 Cdc4 and related F-box 97.7 0.023 4.9E-07 62.4 25.7 249 80-447 227-483 (537)
364 KOG1963 WD40 repeat protein [G 97.6 0.15 3.3E-06 56.5 31.0 145 57-247 163-312 (792)
365 PF04762 IKI3: IKI3 family; I 97.6 0.061 1.3E-06 63.4 30.4 228 58-348 25-290 (928)
366 KOG1007 WD repeat protein TSSC 97.6 0.0064 1.4E-07 57.9 17.9 157 125-346 124-288 (370)
367 KOG0269 WD40 repeat-containing 97.6 0.00057 1.2E-08 73.4 12.4 161 123-349 132-298 (839)
368 KOG0302 Ribosome Assembly prot 97.6 0.002 4.3E-08 63.6 15.0 140 285-449 234-381 (440)
369 KOG1524 WD40 repeat-containing 97.6 0.0019 4E-08 66.6 15.4 97 126-245 106-204 (737)
370 KOG2931 Differentiation-relate 97.6 0.0034 7.3E-08 60.5 16.1 136 524-674 22-158 (326)
371 KOG1523 Actin-related protein 97.6 0.0023 5E-08 61.8 15.0 215 58-350 14-239 (361)
372 TIGR03300 assembly_YfgL outer 97.6 0.061 1.3E-06 57.4 28.2 63 139-204 65-129 (377)
373 KOG1963 WD40 repeat protein [G 97.6 0.056 1.2E-06 59.7 27.2 289 58-445 20-321 (792)
374 TIGR02171 Fb_sc_TIGR02171 Fibr 97.6 0.004 8.6E-08 69.9 18.7 105 68-206 320-451 (912)
375 KOG4378 Nuclear protein COP1 [ 97.6 0.0049 1.1E-07 63.0 17.6 195 146-418 99-299 (673)
376 KOG1063 RNA polymerase II elon 97.6 0.094 2E-06 56.4 27.6 116 41-188 257-380 (764)
377 KOG4328 WD40 protein [Function 97.6 0.017 3.7E-07 58.7 21.1 278 56-435 188-486 (498)
378 PF00151 Lipase: Lipase; Inte 97.6 0.00016 3.4E-09 74.2 7.4 114 552-673 69-187 (331)
379 KOG2321 WD40 repeat protein [G 97.6 0.011 2.3E-07 61.9 20.2 273 58-404 55-348 (703)
380 KOG0303 Actin-binding protein 97.6 0.0054 1.2E-07 61.0 17.3 162 125-350 82-252 (472)
381 KOG0281 Beta-TrCP (transducin 97.6 0.0021 4.7E-08 62.5 14.1 230 125-447 198-429 (499)
382 KOG4283 Transcription-coupled 97.5 0.035 7.6E-07 53.2 21.6 174 125-353 102-282 (397)
383 KOG0307 Vesicle coat complex C 97.5 0.00056 1.2E-08 76.9 11.2 204 58-352 68-289 (1049)
384 KOG0303 Actin-binding protein 97.5 0.014 3E-07 58.2 19.2 206 167-446 79-294 (472)
385 TIGR03300 assembly_YfgL outer 97.5 0.19 4.1E-06 53.6 30.8 64 138-204 104-169 (377)
386 KOG0308 Conserved WD40 repeat- 97.5 0.0048 1E-07 65.3 16.9 218 285-534 95-319 (735)
387 KOG1516 Carboxylesterase and r 97.5 0.00031 6.7E-09 79.0 9.1 129 537-672 97-231 (545)
388 PF00975 Thioesterase: Thioest 97.5 0.00099 2.1E-08 65.5 11.7 97 556-671 2-102 (229)
389 KOG0292 Vesicle coat complex C 97.5 0.017 3.8E-07 63.5 21.2 152 126-348 11-166 (1202)
390 PF07519 Tannase: Tannase and 97.5 0.0053 1.2E-07 66.5 17.9 129 536-674 16-151 (474)
391 PLN02733 phosphatidylcholine-s 97.5 0.00029 6.4E-09 74.8 7.9 87 576-671 109-199 (440)
392 KOG1408 WD40 repeat protein [F 97.5 0.0081 1.8E-07 64.2 17.9 246 125-447 460-714 (1080)
393 KOG0276 Vesicle coat complex C 97.5 0.11 2.4E-06 55.2 25.7 231 55-351 14-261 (794)
394 KOG0646 WD40 repeat protein [G 97.4 0.0034 7.5E-08 63.7 14.3 190 285-507 103-316 (476)
395 COG3391 Uncharacterized conser 97.4 0.048 1E-06 57.9 23.9 210 55-353 74-289 (381)
396 KOG0650 WD40 repeat nucleolar 97.4 0.014 3E-07 61.4 18.5 68 57-156 403-472 (733)
397 KOG0647 mRNA export protein (c 97.4 0.12 2.6E-06 50.0 23.1 115 55-200 28-147 (347)
398 KOG0646 WD40 repeat protein [G 97.4 0.011 2.4E-07 60.1 17.2 217 57-355 84-316 (476)
399 KOG0268 Sof1-like rRNA process 97.4 0.0052 1.1E-07 60.4 14.4 180 286-507 168-354 (433)
400 PF13360 PQQ_2: PQQ-like domai 97.4 0.087 1.9E-06 52.0 24.2 65 138-205 35-101 (238)
401 PF05990 DUF900: Alpha/beta hy 97.4 0.0014 3.1E-08 63.8 10.8 141 553-725 17-168 (233)
402 KOG0308 Conserved WD40 repeat- 97.3 0.0082 1.8E-07 63.6 16.1 208 138-416 84-301 (735)
403 KOG1034 Transcriptional repres 97.3 0.065 1.4E-06 52.4 20.7 108 125-247 90-201 (385)
404 KOG1920 IkappaB kinase complex 97.3 0.17 3.7E-06 58.3 27.1 207 55-351 69-326 (1265)
405 KOG1332 Vesicle coat complex C 97.3 0.034 7.3E-07 52.0 18.0 240 138-452 22-290 (299)
406 KOG4283 Transcription-coupled 97.3 0.048 1E-06 52.3 19.2 137 81-247 124-266 (397)
407 KOG0274 Cdc4 and related F-box 97.3 0.16 3.5E-06 55.8 26.3 266 138-506 218-490 (537)
408 KOG0290 Conserved WD40 repeat- 97.2 0.087 1.9E-06 50.6 19.9 288 125-483 45-355 (364)
409 KOG4840 Predicted hydrolases o 97.2 0.0068 1.5E-07 55.6 12.2 108 555-676 37-147 (299)
410 KOG0302 Ribosome Assembly prot 97.2 0.018 3.8E-07 57.1 15.9 158 128-348 215-379 (440)
411 PF06977 SdiA-regulated: SdiA- 97.2 0.048 1.1E-06 53.2 19.1 199 57-332 24-239 (248)
412 PF05577 Peptidase_S28: Serine 97.2 0.0016 3.4E-08 70.9 9.7 116 554-674 29-149 (434)
413 KOG2111 Uncharacterized conser 97.2 0.18 3.9E-06 49.2 21.8 152 126-348 96-257 (346)
414 KOG4378 Nuclear protein COP1 [ 97.2 0.072 1.6E-06 54.8 20.1 180 285-500 101-282 (673)
415 KOG1034 Transcriptional repres 97.2 0.015 3.2E-07 56.7 14.6 80 54-160 135-215 (385)
416 PF06977 SdiA-regulated: SdiA- 97.2 0.045 9.7E-07 53.5 18.3 195 172-432 24-239 (248)
417 PF07676 PD40: WD40-like Beta 97.1 0.00053 1.2E-08 45.4 3.5 28 58-85 12-39 (39)
418 PRK02888 nitrous-oxide reducta 97.1 0.043 9.3E-07 59.8 19.7 132 59-246 197-339 (635)
419 PF05705 DUF829: Eukaryotic pr 97.1 0.018 3.8E-07 57.0 15.7 65 708-772 176-240 (240)
420 KOG0269 WD40 repeat-containing 97.1 0.03 6.6E-07 60.8 17.7 269 58-423 43-319 (839)
421 KOG0321 WD40 repeat-containing 97.1 0.14 3E-06 54.6 21.8 70 125-198 101-175 (720)
422 PRK11138 outer membrane biogen 97.0 0.2 4.4E-06 53.7 24.3 64 138-203 160-228 (394)
423 KOG1332 Vesicle coat complex C 97.0 0.082 1.8E-06 49.5 17.3 70 125-196 57-132 (299)
424 PF13360 PQQ_2: PQQ-like domai 97.0 0.076 1.6E-06 52.4 19.3 225 147-448 2-230 (238)
425 PF15492 Nbas_N: Neuroblastoma 97.0 0.3 6.6E-06 47.2 21.6 80 59-166 2-82 (282)
426 KOG0268 Sof1-like rRNA process 97.0 0.0052 1.1E-07 60.4 9.9 151 127-347 190-345 (433)
427 KOG2394 WD40 protein DMR-N9 [G 96.9 0.0023 4.9E-08 66.1 6.8 72 126-201 292-365 (636)
428 TIGR02171 Fb_sc_TIGR02171 Fibr 96.9 0.0047 1E-07 69.3 9.7 98 182-335 319-421 (912)
429 KOG0270 WD40 repeat-containing 96.9 0.085 1.8E-06 53.7 17.5 136 285-448 266-406 (463)
430 COG3391 Uncharacterized conser 96.9 0.47 1E-05 50.4 24.6 243 128-447 34-282 (381)
431 PRK02888 nitrous-oxide reducta 96.8 0.66 1.4E-05 50.9 25.2 179 285-499 215-405 (635)
432 PRK11138 outer membrane biogen 96.8 0.94 2E-05 48.6 31.1 64 139-204 120-184 (394)
433 KOG0649 WD40 repeat protein [G 96.8 0.47 1E-05 44.6 23.6 122 230-411 117-245 (325)
434 KOG1587 Cytoplasmic dynein int 96.8 0.41 8.8E-06 52.5 23.4 117 310-446 395-516 (555)
435 KOG1063 RNA polymerase II elon 96.8 0.016 3.6E-07 61.9 12.3 105 125-248 526-639 (764)
436 PF00450 Peptidase_S10: Serine 96.8 0.011 2.4E-07 64.1 11.9 143 527-674 16-182 (415)
437 KOG2565 Predicted hydrolases o 96.7 0.0078 1.7E-07 59.8 8.6 119 533-668 132-259 (469)
438 KOG1007 WD repeat protein TSSC 96.7 0.11 2.3E-06 50.0 15.7 165 40-246 109-277 (370)
439 PF04053 Coatomer_WDAD: Coatom 96.7 0.19 4.1E-06 53.9 19.7 127 127-332 35-163 (443)
440 KOG3975 Uncharacterized conser 96.7 0.097 2.1E-06 49.4 15.0 100 552-659 27-131 (301)
441 KOG4227 WD40 repeat protein [G 96.7 0.33 7.3E-06 48.5 19.4 111 57-199 59-180 (609)
442 KOG4547 WD40 repeat-containing 96.6 0.51 1.1E-05 50.1 21.6 137 146-347 78-222 (541)
443 COG3319 Thioesterase domains o 96.6 0.0044 9.5E-08 60.5 6.4 100 555-674 1-104 (257)
444 PF07082 DUF1350: Protein of u 96.6 0.032 6.9E-07 53.3 11.8 185 539-754 8-204 (250)
445 COG4782 Uncharacterized protei 96.6 0.017 3.6E-07 57.9 10.1 113 553-676 115-237 (377)
446 COG2319 FOG: WD40 repeat [Gene 96.5 1.4 3.1E-05 47.0 36.0 201 58-355 113-322 (466)
447 PF07676 PD40: WD40-like Beta 96.5 0.0084 1.8E-07 39.6 5.6 34 310-343 5-39 (39)
448 KOG0300 WD40 repeat-containing 96.5 0.36 7.9E-06 46.9 18.3 160 309-499 268-429 (481)
449 PF04053 Coatomer_WDAD: Coatom 96.5 0.18 3.9E-06 54.1 18.2 128 57-247 35-164 (443)
450 KOG2100 Dipeptidyl aminopeptid 96.5 1.4 3.1E-05 51.0 26.4 105 60-190 102-227 (755)
451 KOG2321 WD40 repeat protein [G 96.5 0.16 3.5E-06 53.4 16.7 112 314-446 229-343 (703)
452 COG2319 FOG: WD40 repeat [Gene 96.4 1.8 4E-05 46.2 32.1 236 125-445 66-313 (466)
453 PF11187 DUF2974: Protein of u 96.3 0.0091 2E-07 57.5 6.7 75 596-671 43-121 (224)
454 COG3490 Uncharacterized protei 96.3 0.21 4.6E-06 48.1 15.3 218 58-354 71-317 (366)
455 PRK13614 lipoprotein LpqB; Pro 96.3 0.36 7.8E-06 53.2 19.5 143 56-246 344-503 (573)
456 KOG0267 Microtubule severing p 96.2 0.013 2.9E-07 62.8 7.8 113 57-202 73-188 (825)
457 COG3204 Uncharacterized protei 96.2 1.4 3E-05 43.2 20.5 104 126-247 87-200 (316)
458 KOG2281 Dipeptidyl aminopeptid 96.1 0.4 8.7E-06 51.7 17.6 80 58-145 203-286 (867)
459 KOG1523 Actin-related protein 96.1 0.51 1.1E-05 46.3 16.8 77 230-352 13-91 (361)
460 COG3946 VirJ Type IV secretory 96.0 0.036 7.9E-07 56.1 9.3 160 579-772 278-446 (456)
461 PF08386 Abhydrolase_4: TAP-li 96.0 0.02 4.2E-07 47.7 6.5 59 710-773 34-92 (103)
462 KOG2041 WD40 repeat protein [G 96.0 0.29 6.3E-06 52.9 16.2 73 57-161 118-191 (1189)
463 KOG1920 IkappaB kinase complex 95.9 0.44 9.5E-06 55.1 18.0 193 286-497 91-321 (1265)
464 KOG2183 Prolylcarboxypeptidase 95.9 0.035 7.7E-07 56.3 8.5 92 580-672 103-202 (492)
465 KOG0301 Phospholipase A2-activ 95.8 2.5 5.4E-05 46.1 22.0 89 310-417 176-264 (745)
466 KOG0290 Conserved WD40 repeat- 95.8 0.3 6.4E-06 47.1 13.7 123 82-249 174-309 (364)
467 KOG1587 Cytoplasmic dynein int 95.7 3.7 8.1E-05 45.2 23.7 95 393-499 420-517 (555)
468 PF05057 DUF676: Putative seri 95.7 0.031 6.7E-07 54.0 7.2 21 637-657 77-97 (217)
469 KOG0270 WD40 repeat-containing 95.7 0.22 4.7E-06 50.9 13.0 160 127-356 246-413 (463)
470 PLN03016 sinapoylglucose-malat 95.6 0.058 1.3E-06 57.7 9.6 142 527-674 42-211 (433)
471 KOG0321 WD40 repeat-containing 95.6 0.72 1.6E-05 49.5 16.9 304 139-500 63-393 (720)
472 PRK10252 entF enterobactin syn 95.5 0.035 7.7E-07 70.0 9.0 98 555-671 1069-1169(1296)
473 KOG0301 Phospholipase A2-activ 95.5 3.3 7.2E-05 45.2 21.6 150 310-497 137-287 (745)
474 KOG2182 Hydrolytic enzymes of 95.5 0.063 1.4E-06 56.1 8.8 117 553-673 85-207 (514)
475 PRK13613 lipoprotein LpqB; Pro 95.4 0.41 9E-06 53.4 15.5 140 56-244 364-522 (599)
476 KOG1310 WD40 repeat protein [G 95.4 0.58 1.2E-05 49.2 15.2 220 230-505 53-310 (758)
477 COG3204 Uncharacterized protei 95.3 2.7 5.7E-05 41.3 18.2 118 172-346 88-211 (316)
478 KOG1282 Serine carboxypeptidas 95.3 0.1 2.2E-06 55.4 9.7 145 526-674 48-214 (454)
479 COG1075 LipA Predicted acetylt 95.2 0.06 1.3E-06 55.9 7.8 98 556-672 61-163 (336)
480 COG3490 Uncharacterized protei 95.2 0.73 1.6E-05 44.6 14.0 109 171-332 69-180 (366)
481 PLN02209 serine carboxypeptida 95.1 0.14 3.1E-06 54.8 10.5 144 526-674 43-213 (437)
482 KOG1551 Uncharacterized conser 95.0 0.052 1.1E-06 51.4 5.9 57 713-774 309-365 (371)
483 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 7.6 0.00016 43.2 28.1 76 339-427 441-517 (527)
484 KOG4547 WD40 repeat-containing 95.0 6.3 0.00014 42.2 22.1 141 285-447 124-271 (541)
485 KOG2111 Uncharacterized conser 95.0 4.2 9.1E-05 40.2 24.8 176 148-399 75-256 (346)
486 KOG4389 Acetylcholinesterase/B 94.9 0.053 1.1E-06 56.3 6.0 130 537-674 121-256 (601)
487 PF13449 Phytase-like: Esteras 94.9 3.9 8.3E-05 42.4 20.1 198 125-348 20-252 (326)
488 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.8 8.3 0.00018 42.9 34.5 65 278-351 264-337 (527)
489 PF07995 GSDH: Glucose / Sorbo 94.6 4.5 9.7E-05 42.0 19.8 104 56-182 3-126 (331)
490 KOG0267 Microtubule severing p 94.6 0.089 1.9E-06 56.9 7.1 154 125-348 71-227 (825)
491 PRK13615 lipoprotein LpqB; Pro 94.4 0.99 2.2E-05 49.7 14.8 142 57-246 336-487 (557)
492 KOG0322 G-protein beta subunit 94.4 0.66 1.4E-05 44.2 11.4 33 310-346 290-322 (323)
493 PF11288 DUF3089: Protein of u 94.3 0.059 1.3E-06 50.5 4.6 85 588-673 45-137 (207)
494 KOG3967 Uncharacterized conser 94.3 0.29 6.4E-06 44.9 8.7 101 553-661 100-213 (297)
495 cd00741 Lipase Lipase. Lipase 94.3 0.1 2.2E-06 47.4 6.1 38 621-660 13-50 (153)
496 KOG3724 Negative regulator of 94.3 0.087 1.9E-06 57.9 6.3 39 620-658 157-202 (973)
497 COG4257 Vgb Streptogramin lyas 94.2 5.7 0.00012 38.6 23.8 144 52-247 59-207 (353)
498 TIGR03712 acc_sec_asp2 accesso 94.2 1.4 3E-05 46.5 14.3 104 552-675 287-392 (511)
499 PF01764 Lipase_3: Lipase (cla 94.1 0.095 2.1E-06 46.6 5.4 52 619-672 47-105 (140)
500 KOG0300 WD40 repeat-containing 94.1 1.8 3.9E-05 42.3 13.9 49 287-347 296-344 (481)
No 1
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-62 Score=494.10 Aligned_cols=667 Identities=40% Similarity=0.633 Sum_probs=541.0
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCc--cc-----eecCCCC
Q 004067 96 VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSK--PE-----LKLSSSS 168 (776)
Q Consensus 96 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~--~~-----~~l~~~~ 168 (776)
+.+.++.+.....++.+++++++|.|....||.+|.|.. -...++|...+.+|...-.+.. .. ..+...+
T Consensus 122 ~qs~~~~g~~~sp~SrEe~LlrERkR~~~~GItsYe~hk---~sg~~lF~~~s~l~~c~d~g~~~~t~~p~~p~~v~t~~ 198 (867)
T KOG2281|consen 122 FQSTPDYGVYKSPPSREEELLRERKRLGVTGITSYEIHK---GSGKFLFQANSGLYHCSDGGPQGFTVSPLTPLPVKTSP 198 (867)
T ss_pred cccCCCcccccCCCChHHHHHHHHhhhceeeeeeEEEEc---CCccEEEEecCCccccccCCCcccccCCCCCccccCCC
Confidence 344455666688899999999999999999999999976 4555666666666654322211 11 1222333
Q ss_pred CCCccCceeCC-CCCEEEEEECCcEEEEecCCCceeEEeeCCCC------CceecCCcccceecccCCcceEEECCCC--
Q 004067 169 CSPVIDPHLSS-DGTMIAFVRDCELHVLNLLINEQRQLTHGANG------NTVTHGLAEYIAQEEMDRKTGYWWSLDS-- 239 (776)
Q Consensus 169 ~~~~~~~~~Sp-Dg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~------~~~~~~~~~~~~~~~~~~~~~~~wspDg-- 239 (776)
......|+.+| |+..|+|+...++|+.++.+++.+++|....+ +.+..|++.++.+||++|+.+++|+|-+
T Consensus 199 t~~~~dP~lcP~~~~fia~i~~~dl~V~n~~~~~ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~GyWW~p~s~~ 278 (867)
T KOG2281|consen 199 TSTRMDPKLCPADPDFIAYIKVCDLWVLNILTGEEKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFEGYWWSPPSGL 278 (867)
T ss_pred CCCccCcccCCCCccceeeeehhhhhhhhhhhchhhceeeeeccccccccchhhcCcchHHHHHHHHhhcceeecCCCCC
Confidence 33457789988 59999999999999999999999999874433 3567799999999999999999999743
Q ss_pred --CeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC---CceEEEEccc---CCCCCCC
Q 004067 240 --KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG---GPVSWMDLQC---GGTDQNY 311 (776)
Q Consensus 240 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~---~~~~~l~~~~---~~~~~~~ 311 (776)
.+|+|-..|++.+..+..+ ......+...+.+||..|..|++..|.++...+ |+...+.... +...++.
T Consensus 279 ~~~rIlYeeVdesev~V~h~~---s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~~~~~~f~ 355 (867)
T KOG2281|consen 279 KILRILYEEVDESEVEVIHVP---SPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQPFHCLFE 355 (867)
T ss_pred ceEEEEeeecChhheEEEecc---CcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhcccccccccc
Confidence 4788877777766544443 333345788999999999999999998888776 4443332211 1112344
Q ss_pred CcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCce---------------------EEEEEeccCceeeccccc
Q 004067 312 DEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR---------------------KVILVEELDSWVNLHDCF 369 (776)
Q Consensus 312 ~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~---------------------~~l~~~~~~~~~~~~~~~ 369 (776)
.-.++..+.|.|||+ ..+...+|.+..-.|.+++++.... ..+.++....|+..+++|
T Consensus 356 ~~EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee~sd~winiHd~f 435 (867)
T KOG2281|consen 356 DVEYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEEPSDGWINIHDIF 435 (867)
T ss_pred cceeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEecCCCceEEhhhcc
Confidence 557899999999999 5557788988888999999877655 667777788999999999
Q ss_pred ccCCCCccccCCeEEEEeccCCceEEEEEeCCC----------------------ceeeccccCCeEEEEE--EeecCCC
Q 004067 370 TPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----------------------TCLGPITEGDWMVEQI--VGVNEAS 425 (776)
Q Consensus 370 ~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g----------------------~~~~~lt~~~~~~~~~--~~~s~dg 425 (776)
.+.+..-+.....++|+++..|+.+||++.... ++...||.++|.|... ++.+.-.
T Consensus 436 ~~~~~~~~e~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~VdE~~ 515 (867)
T KOG2281|consen 436 HPLPQSTHEASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWVDEVR 515 (867)
T ss_pred cccccCCccceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeeecccc
Confidence 886643223334589999999999999997443 2345678888887643 4577778
Q ss_pred cEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 426 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
+.+||.++.++|.+-+||.+..... +++.+||..+-.+...++.+.+.++..+++-..|+.+.++.+++.+....
T Consensus 516 ~LVYf~gt~d~PlE~hLyvvsye~~-----g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l 590 (867)
T KOG2281|consen 516 KLVYFVGTKDTPLEHHLYVVSYENP-----GEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPL 590 (867)
T ss_pred eEEEEEccCCCCceeeEEEEEEecC-----CceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcc
Confidence 9999999999999999999998422 37889998765567789999999999999999999999999887664333
Q ss_pred eccCCCchh-----hhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhh
Q 004067 506 LYEQPLTVP-----RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 580 (776)
Q Consensus 506 l~~~~~~~~-----~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~ 580 (776)
. .....-. ...+.++..+|.+.|.+..|..+++.+|+|.+..++ +|+|+|++++|||+.+.+.+.|...-...
T Consensus 591 ~-~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pg-kkYptvl~VYGGP~VQlVnnsfkgi~ylR 668 (867)
T KOG2281|consen 591 P-KQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPG-KKYPTVLNVYGGPGVQLVNNSFKGIQYLR 668 (867)
T ss_pred c-chhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCC-CCCceEEEEcCCCceEEeeccccceehhh
Confidence 2 1111111 223344556688999998899999999999987544 68999999999999999999997766666
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 581 ~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
...|+++||.|+++|.||+-..|..|...+...+|+.+++|++.++++|.++ +.+|.+||+|-|||+||++++++++++
T Consensus 669 ~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~ 748 (867)
T KOG2281|consen 669 FCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQY 748 (867)
T ss_pred hhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcC
Confidence 7789999999999999999999999999999999999999999999999998 489999999999999999999999999
Q ss_pred CCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC---CcEEEEecCCCCccChHHHHHHHHHH
Q 004067 660 PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK---GKLLLVHGMIDENVHFRHTARLINAL 736 (776)
Q Consensus 660 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~P~lii~G~~D~~v~~~~~~~~~~~l 736 (776)
|++|+++|+.+|+++|+.|+..|.++|++.|..+...|.+.+.+.++.++. ..+|++||.-|+.|+..+...+..+|
T Consensus 749 P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~l 828 (867)
T KOG2281|consen 749 PNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSAL 828 (867)
T ss_pred cceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHH
Confidence 999999999999999999999999999999988888999999999998885 35999999999999999999999999
Q ss_pred HHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 737 VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 737 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.++|++.++++||++.|++...+..+.+-.+++.|+++.
T Consensus 829 vkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~~ 867 (867)
T KOG2281|consen 829 VKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQEN 867 (867)
T ss_pred HhCCCceEEEEccccccccCCCccchhHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999863
No 2
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-49 Score=439.42 Aligned_cols=623 Identities=26% Similarity=0.409 Sum_probs=505.6
Q ss_pred EEeecCCCceEEEEeCC----------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCC
Q 004067 131 EWVKTSSKKKIIMVPLP----------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLIN 200 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~~~----------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g 200 (776)
..+| |.+.+++..+ ...+++++.++... .....+...+....|||.|+.++|+..++||.......
T Consensus 103 ~~s~---d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wsp~~~~l~yv~~~niy~~~~~~~ 178 (755)
T KOG2100|consen 103 LISP---DRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKL-HPPEYEGSKIQYASWSPLGNDLAYVLHNNIYYQSSEED 178 (755)
T ss_pred ccCh---hhhhheeccCcccccceeeEEEEEEEEcCCCCcc-cCcccCCCeeEEEEEcCCCCEEEEEEecccccccCcCC
Confidence 5566 8888887743 23567778777722 12222223356799999999999999999999988888
Q ss_pred ceeEEeeCCCCCceecCCcccceeccc-CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEM-DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+..+++.++..+.+..+.++|+++||. ....+.+|||||..++|...+...+..+.++.+... ..-+....+.||.+|
T Consensus 179 ~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~~~~~~ypk~g 257 (755)
T KOG2100|consen 179 EDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPKSTNFHYPKAG 257 (755)
T ss_pred CceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCcccceeecCCCC
Confidence 888888888777899999999999666 667889999999999999999999999988888766 123556678999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..++.+.++++|........+... ........++..+.|.-+.+.++.+.+|.+....+.++|.. +..........
T Consensus 258 ~~np~v~l~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~~~ 333 (755)
T KOG2100|consen 258 APNPAVSLFVVDLHDPPRLGIPPP---TNQRSGEYYVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEESS 333 (755)
T ss_pred CCCCeEEEEEEeCCCceeeccCCc---cccccCceEEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEeccc
Confidence 999999999999655443331111 11234567889999999999899999999888888899887 56555555544
Q ss_pred C-ceeecccccccCCCCccccCCeE-EEEeccCC-ceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 360 D-SWVNLHDCFTPLDKGVTKYSGGF-IWASEKTG-FRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 360 ~-~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~g-~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
. .|+.... ..+ .+++++... ++.+..++ +.++......++ .+..+|.+.|.+.....++.+++.++|.+...
T Consensus 334 ~~~W~~~~~-~~~---~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~ 409 (755)
T KOG2100|consen 334 DGGWVEHQN-VEP---VFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEE 409 (755)
T ss_pred ccccccccc-ccc---eEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCC
Confidence 4 4875532 111 124444443 34444455 889988887776 78889999999998888888999999999988
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCCC-----CeEEEEEcCCcCEEEEEeeCCCCCC-EEEEEEcCCCceeEeeccC
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGK-----GKHVAVLDHNMRNFVDFHDSLDSPP-RILLCSLQDGSLVLPLYEQ 509 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~ 509 (776)
++...+||++++. .. ....+++.. ...++++++..++++..++.+..|. .+-+...........|..+
T Consensus 410 ~~~~~~ly~i~~~--~~----~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n 483 (755)
T KOG2100|consen 410 DPSERHLYSISLG--SG----TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETN 483 (755)
T ss_pred CCCceEEEEEEcc--cc----ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccC
Confidence 7888999999983 22 344466554 2457799999999999998877653 3333333333335667777
Q ss_pred CCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCc
Q 004067 510 PLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI 589 (776)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~ 589 (776)
......++...++..+...+.. +|....+.+..|++.... +++|+|+.+||||+++.+...|...|. ...+...|+
T Consensus 484 ~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~-~kyPllv~~yGGP~sq~v~~~~~~~~~--~~~~s~~g~ 559 (755)
T KOG2100|consen 484 EELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPS-KKYPLLVVVYGGPGSQSVTSKFSVDWN--EVVVSSRGF 559 (755)
T ss_pred hhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCC-CCCCEEEEecCCCCcceeeeeEEecHH--HHhhccCCe
Confidence 7777788888888888888877 899999999999987444 699999999999998887777766653 335678999
Q ss_pred EEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC-CceEEEEE
Q 004067 590 LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP-DVFQCAVS 668 (776)
Q Consensus 590 ~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~-~~~~~~v~ 668 (776)
+|+.+|+||+|+.|..+.......+|..++.|+..+++++.+++++|.+||+|+|+|+||++++.++...+ +.|+|+++
T Consensus 560 ~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgva 639 (755)
T KOG2100|consen 560 AVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVA 639 (755)
T ss_pred EEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 88999999
Q ss_pred cCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcE-EEEecCCCCccChHHHHHHHHHHHHCCCCeEEEE
Q 004067 669 GAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKL-LLVHGMIDENVHFRHTARLINALVAARKPYEILI 747 (776)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~-lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 747 (776)
++|+++|..++..+.+++++.|..+...|.+.++...+.+++.|. |++||+.|..|+.+++.+++++|+.+|+++++++
T Consensus 640 vaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~v 719 (755)
T KOG2100|consen 640 VAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLV 719 (755)
T ss_pred ecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEE
Confidence 999999999999999999999998888899999999999999777 9999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 748 FPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 748 ~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
||+++|++........++..+..||..++
T Consensus 720 ypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 720 YPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred eCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 99999999888888899999999998653
No 3
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-43 Score=391.99 Aligned_cols=572 Identities=23% Similarity=0.286 Sum_probs=387.7
Q ss_pred CeeeEEEeecCCCceEEEEeCC----------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----C
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLP----------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----C 190 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~----------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----~ 190 (776)
.+..+..+| +++.+++... ..+|+.|... .. .++... ....+.|||||+.+++... .
T Consensus 14 ~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~-~~~~~~--~~~~~~~spdg~~~~~~~~~~~~~~ 85 (620)
T COG1506 14 RVSDPRVSP---PGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VR-LLTFGG--GVSELRWSPDGSVLAFVSTDGGRVA 85 (620)
T ss_pred cccCcccCC---CCceeEEeeccccccccccccceEEEeccc--cc-ccccCC--cccccccCCCCCEEEEEeccCCCcc
Confidence 355667778 8888888733 3466655444 22 333332 4788999999999999982 3
Q ss_pred cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 191 ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 191 ~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
++|+++.. | .++..... +....|+|+|+.+++.......... +.. ....
T Consensus 86 ~l~l~~~~-g---~~~~~~~~------------------v~~~~~~~~g~~~~~~~~~~~~~~~------~~~---~~~~ 134 (620)
T COG1506 86 QLYLVDVG-G---LITKTAFG------------------VSDARWSPDGDRIAFLTAEGASKRD------GGD---HLFV 134 (620)
T ss_pred eEEEEecC-C---ceeeeecc------------------cccceeCCCCCeEEEEecccccccC------Cce---eeee
Confidence 68888888 5 22211111 3356799999999994322110000 000 0001
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC---ceEEEEEEECC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ---TKLKVLKFDIK 347 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~l~~~d~~ 347 (776)
..+.+-..+.......++++|.++ +...+ ......+..+.|.+|++.++....... .....+.+...
T Consensus 135 ~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (620)
T COG1506 135 DRLPVWFDGRGGERSDLYVVDIES-KLIKL---------GLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEG 204 (620)
T ss_pred cccceeecCCCCcccceEEEccCc-ccccc---------cCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecC
Confidence 111111122223456788888877 33222 334445666777777776665544332 22344444445
Q ss_pred CCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC--C---ceEEEEEeCCCceeec-cccCC-eEEEEEEe
Q 004067 348 TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT--G---FRHLYLHDINGTCLGP-ITEGD-WMVEQIVG 420 (776)
Q Consensus 348 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--g---~~~l~~~~~~g~~~~~-lt~~~-~~~~~~~~ 420 (776)
++....++..... .....+ ..++..+.+..... + ...+++++.+.++... +...+ ........
T Consensus 205 ~~~~~~~~~~~~~---~~~~~~-------~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 274 (620)
T COG1506 205 NGELESLTPGEGS---ISKLAF-------DADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVE 274 (620)
T ss_pred CCceEEEcCCCce---eeeeee-------CCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhc
Confidence 6666666554322 111111 12233355544332 2 1355555522222222 11111 00001111
Q ss_pred ecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 421 VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 421 ~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
..-++..++|.+.... ....++.+... +. ...+..........|+.+++.+++..+++..|+++++++. +.
T Consensus 275 ~~~~~~~~~~~~~~~~-g~~~l~~~~~~--~~-----~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~-~~ 345 (620)
T COG1506 275 GGLDGDGLLFIATDGG-GSSPLFRVDDL--GG-----GVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR-GE 345 (620)
T ss_pred cccCCCcEEEEEecCC-CceEEEEEecc--CC-----ceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC-CC
Confidence 2246666777776622 23566666642 21 1222222222233555699999999999999999999887 33
Q ss_pred ceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhh
Q 004067 501 SLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 580 (776)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~ 580 (776)
. .+.+.. ....+.+..+.++|.+++++.||.++++|++.|.+... .+++|+|+++||||..+.. | .+...
T Consensus 346 ~-~~~~~~---~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~-~k~yP~i~~~hGGP~~~~~---~--~~~~~ 415 (620)
T COG1506 346 E-AKLTSS---NNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDP-RKKYPLIVYIHGGPSAQVG---Y--SFNPE 415 (620)
T ss_pred c-eEEeec---ccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCC-CCCCCEEEEeCCCCccccc---c--ccchh
Confidence 3 232222 34567778899999999999999999999999998632 2568999999999966542 2 44556
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 581 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 581 ~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
.+.|+.+||+|+.+|+||++++|++|.......++..+.+|+.++++++.+.+.+|++|++|+|+|+||+|+++++++.+
T Consensus 416 ~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~ 495 (620)
T COG1506 416 IQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP 495 (620)
T ss_pred hHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc
Confidence 88999999999999999999999999999999999999999999999998999999999999999999999999999877
Q ss_pred CceEEEEEcCCCCCcccccccccccccCC-------CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHH
Q 004067 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGL-------PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
.|+++++.++..+|..+...+.+.+... ++.+.+.|...+|+.++.++++|+|+|||+.|.+||.+++++++
T Consensus 496 -~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~ 574 (620)
T COG1506 496 -RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLV 574 (620)
T ss_pred -hhheEEeccCcchhhhhccccchhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHH
Confidence 8899999999888766544433333221 11145678999999999999999999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 734 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++|+..|+++++++||+++|.+..+++....+..+.+||.++|
T Consensus 575 ~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 575 DALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHL 617 (620)
T ss_pred HHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888999999999999999986
No 4
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=2.4e-40 Score=369.94 Aligned_cols=513 Identities=15% Similarity=0.155 Sum_probs=359.9
Q ss_pred ccCceeCCCCCEEEEEECC------cEEEEecCCCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 172 VIDPHLSSDGTMIAFVRDC------ELHVLNLLINEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
+....|||||+.|+|..+. +|++.++++|+. ..+... ...+.|++||+.|+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---------------------~~~~~w~~D~~~~~ 187 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---------------------EPSFVWANDSWTFY 187 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---------------------ceEEEEeeCCCEEE
Confidence 4567899999999999863 599999998863 222110 12478999999999
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC--ceEEEEcccCCCCCCCCcceEEEEEe
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG--PVSWMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
|.+.++... ...++|++++.++ +...+-.. ... ........
T Consensus 188 y~~~~~~~~------------------------------~~~~v~~h~lgt~~~~d~lv~~e------~~~-~~~~~~~~ 230 (686)
T PRK10115 188 YVRKHPVTL------------------------------LPYQVWRHTIGTPASQDELVYEE------KDD-TFYVSLHK 230 (686)
T ss_pred EEEecCCCC------------------------------CCCEEEEEECCCChhHCeEEEee------CCC-CEEEEEEE
Confidence 988643100 0156899999988 44444221 111 12223344
Q ss_pred ccCCeEEEEEEeecCceEEEEEEEC--CCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEE
Q 004067 322 MHGNILTAQVLNRSQTKLKVLKFDI--KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLH 398 (776)
Q Consensus 322 SpDg~~l~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~ 398 (776)
+.|++.+++..... ....++++++ .++..+.+........ +.+. ..++.+++.++. .....|+.+
T Consensus 231 s~d~~~l~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~~~ly~~tn~~~~~~~l~~~ 298 (686)
T PRK10115 231 TTSKHYVVIHLASA-TTSEVLLLDAELADAEPFVFLPRRKDHE------YSLD-----HYQHRFYLRSNRHGKNFGLYRT 298 (686)
T ss_pred cCCCCEEEEEEECC-ccccEEEEECcCCCCCceEEEECCCCCE------EEEE-----eCCCEEEEEEcCCCCCceEEEe
Confidence 55898776444333 4566788774 3455555554433321 1111 113557777765 345678888
Q ss_pred eCC-CceeeccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec-CCCC-eEEEEEc
Q 004067 399 DIN-GTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKG-KHVAVLD 473 (776)
Q Consensus 399 ~~~-g~~~~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-~~~~-~~~~~~s 473 (776)
++. .++.+.|..+ +..+..+. ++ ++.|++....++. ..|+.+++ .+. .+..|+ .... ...+.++
T Consensus 299 ~~~~~~~~~~l~~~~~~~~i~~~~-~~--~~~l~~~~~~~g~--~~l~~~~~--~~~----~~~~l~~~~~~~~~~~~~~ 367 (686)
T PRK10115 299 RVRDEQQWEELIPPRENIMLEGFT-LF--TDWLVVEERQRGL--TSLRQINR--KTR----EVIGIAFDDPAYVTWIAYN 367 (686)
T ss_pred cCCCcccCeEEECCCCCCEEEEEE-EE--CCEEEEEEEeCCE--EEEEEEcC--CCC----ceEEecCCCCceEeeeccc
Confidence 876 3444555444 23455544 43 5678888776654 67888886 332 455555 2222 2233344
Q ss_pred --CCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCC
Q 004067 474 --HNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP 551 (776)
Q Consensus 474 --pdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~ 551 (776)
+++..+++..++...|+++|.+|..+++ .+.+.... ...+++..+ .++.+++++.||.+|+++++.++.. ...
T Consensus 368 ~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~l~~~~--~~~~~~~~~-~~e~v~~~s~DG~~Ip~~l~~~~~~-~~~ 442 (686)
T PRK10115 368 PEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRVLKQTE--VPGFDAANY-RSEHLWITARDGVEVPVSLVYHRKH-FRK 442 (686)
T ss_pred CCCCCceEEEEEecCCCCCEEEEEECCCCc-EEEEEecC--CCCcCcccc-EEEEEEEECCCCCEEEEEEEEECCC-CCC
Confidence 7788899999999999999999997775 34454322 223555455 8899999999999999966664432 222
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|+||++|||++... .+.|....+.|+++||+|+.+++||+|++|+.|........+..+++|+++++++|++
T Consensus 443 ~~~P~ll~~hGg~~~~~-----~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~ 517 (686)
T PRK10115 443 GHNPLLVYGYGSYGASI-----DADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLK 517 (686)
T ss_pred CCCCEEEEEECCCCCCC-----CCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Confidence 46699999999988754 2334445678999999999999999999999999987777777899999999999999
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc---c--ccccc--ccCCCCCC--ccchhcCCh
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---T--FYTEK--YMGLPSED--PVGYEYSSV 702 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~---~--~~~~~--~~~~~~~~--~~~~~~~~~ 702 (776)
++++|++|++++|.|+||+++.+++.++|++|+|+|+..|+.|+..+. . ....+ ..|.|++. ...+...+|
T Consensus 518 ~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP 597 (686)
T PRK10115 518 LGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSP 597 (686)
T ss_pred cCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999976431 1 11111 12666532 234567899
Q ss_pred hhhhccCCCc-EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe---cCCCCCCC-CCCcHHHHHHHHHHHHHHh
Q 004067 703 MHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAARKPYEILIF---PDERHMPR-RHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 703 ~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~---~~~~H~~~-~~~~~~~~~~~~~~fl~~~ 775 (776)
+.++.+++.| +|++||.+|.+||+.++.+++++|++.+.+.+++++ +++||... ......+..+...+|+...
T Consensus 598 ~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~ 675 (686)
T PRK10115 598 YDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIAL 675 (686)
T ss_pred hhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999988 677899999999999999999999999999888888 99999842 2222344455567777654
No 5
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=100.00 E-value=3.1e-40 Score=345.24 Aligned_cols=339 Identities=34% Similarity=0.573 Sum_probs=278.5
Q ss_pred CCCceEEEEe----------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 136 SSKKKIIMVP----------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 136 ~~dg~~l~~~----------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
||||+++++. ..+++|++|+++++.+ +++... .....+.|||||+.|||+.+++||+.++.+++.++|
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~-~l~~~~-~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT-PLTPPP-PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE-ESS-EE-TTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE-ECcCCc-cccccceeecCCCeeEEEecCceEEEECCCCCeEEe
Confidence 4599999995 3467999999999998 777653 348899999999999999999999999999999999
Q ss_pred eeCCCCCceecCCcccceecc-cCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 206 THGANGNTVTHGLAEYIAQEE-MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
|.++ ...+.+|.++|+++|| +++..+++|||||++|+|.+.|++.++.+.+..+.......+....++||.+|+.++.
T Consensus 79 T~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 79 TTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp ES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred cccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 9988 6789999999999999 8999999999999999999999999999999988776433467889999999999999
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..|+++|+++++...+..+.. ......++..+.|++|++ .++.+.+|.++...|+++|+++|..+.+..+....|+
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~---~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNS---LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV 234 (353)
T ss_dssp EEEEEEESSSTCCCEE---HH---HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS
T ss_pred eEEEEEECCCCcEEEeeeccc---cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce
Confidence 999999999999877655310 124578899999999999 8888899999999999999999999999988888998
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
.....+.+. ..+++.++++++++|+.|||+++.+++..++||.+++.|..+..++++++.|||+++.++|.+.+||
T Consensus 235 ~~~~~~~~~----~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 235 DVYDPPHFL----GPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSSEEEE-----TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred eeecccccc----cCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 653332221 1357779999999999999999999999999999999998888999999999999999888889999
Q ss_pred EEEeCCC-CCCccccceeecCCCCeE-EEEEcCCcCEEEEEeeCCCCCC
Q 004067 444 CAKLYPD-WNHTLEAPVKLTNGKGKH-VAVLDHNMRNFVDFHDSLDSPP 490 (776)
Q Consensus 444 ~~~~~~~-g~~~~~~~~~l~~~~~~~-~~~~spdg~~l~~~~~~~~~~~ 490 (776)
++++ + +. .+++||+..+.+ .++|||||++++..+++++.|+
T Consensus 311 ~v~~--~~~~----~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 311 RVSL--DSGG----EPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp EEET--TETT----EEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred EEEe--CCCC----CeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 9999 4 43 799999998876 9999999999999999998875
No 6
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.97 E-value=8.9e-27 Score=241.13 Aligned_cols=512 Identities=16% Similarity=0.152 Sum_probs=338.6
Q ss_pred ccCceeCCCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEE
Q 004067 172 VIDPHLSSDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFT 245 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~ 245 (776)
+...+.|||++.+||..+. .|.+.|+++|+......... ...+.|.+|++.++|.
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~-------------------~~~~~Wa~d~~~lfYt 191 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNT-------------------SGSFAWAADGKTLFYT 191 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhccc-------------------ccceEEecCCCeEEEE
Confidence 5568999999999999763 48888999987644322211 2367899999999999
Q ss_pred EecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC--CceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 246 QVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG--GPVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
+.++...+. +|+...+.+ ...+.+-. -....+...+.=|.
T Consensus 192 ~~d~~~rp~-------------------------------kv~~h~~gt~~~~d~lvye-------E~d~~f~~~v~~s~ 233 (682)
T COG1770 192 RLDENHRPD-------------------------------KVWRHRLGTPGSSDELVYE-------EKDDRFFLSVGRSR 233 (682)
T ss_pred EEcCCCCcc-------------------------------eEEEEecCCCCCcceEEEE-------cCCCcEEEEeeecc
Confidence 987664221 222222222 22222211 12333444555566
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCC--ceEEEEEeccC-ceeecccccccCCCCccccCCeEEEEeccCC-ceEEEEEe
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTG--QRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGGFIWASEKTG-FRHLYLHD 399 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g-~~~l~~~~ 399 (776)
..++|++..+. ....++++++.+.. +++.+...... .+. . -.-++.+++.++.+| ...|+...
T Consensus 234 s~~yi~i~~~~-~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~-------~-----eh~~d~f~i~sN~~gknf~l~~ap 300 (682)
T COG1770 234 SEAYIVISLGS-HITSEVRLLDADDPEAEPKVVLPRENGVEYS-------V-----EHGGDRFYILSNADGKNFKLVRAP 300 (682)
T ss_pred CCceEEEEcCC-CcceeEEEEecCCCCCceEEEEEcCCCcEEe-------e-----eecCcEEEEEecCCCcceEEEEcc
Confidence 77777666533 35678888888654 44666554322 121 1 111455777787777 55677665
Q ss_pred C--CCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC--CeEEE--EEc
Q 004067 400 I--NGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK--GKHVA--VLD 473 (776)
Q Consensus 400 ~--~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~--~~~~~--~~s 473 (776)
. +-...+.+..+...+. +..++--.++|+..-...+- -.++..+.. +|. ...|.-.. ..... .-.
T Consensus 301 ~~~~~~~w~~~I~h~~~~~-l~~~~~f~~~lVl~eR~~gl--p~v~v~~~~-~~~-----~~~i~f~~~ay~~~l~~~~e 371 (682)
T COG1770 301 VSADKSNWRELIPHREDVR-LEGVDLFADHLVLLERQEGL--PRVVVRDRK-TGE-----ERGIAFDDEAYSAGLSGNPE 371 (682)
T ss_pred CCCChhcCeeeeccCCCce-eeeeeeeccEEEEEecccCC--ceEEEEecC-CCc-----eeeEEecchhhhccccCCCC
Confidence 5 1122333433322211 22234445666666555443 355555553 232 22233222 22222 444
Q ss_pred CCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 004067 474 HNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPP 553 (776)
Q Consensus 474 pdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~ 553 (776)
++...|.+.++++++|.+++-+|+.+++.+. | ...+....+++.+. ..+.+..+..||++++..++.-++. .-+++
T Consensus 372 ~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~-L-kqqeV~~g~dp~~Y-~s~riwa~a~dgv~VPVSLvyrkd~-~~~g~ 447 (682)
T COG1770 372 FDSDRLRYSYSSMTTPATLFDYDMATGERTL-L-KQQEVPGGFDPEDY-VSRRIWATADDGVQVPVSLVYRKDT-KLDGS 447 (682)
T ss_pred CCCccEEEEeecccccceeEEeeccCCcEEE-E-EeccCCCCCChhHe-EEEEEEEEcCCCcEeeEEEEEeccc-CCCCC
Confidence 5788999999999999999999999998533 3 33333333555555 5677888878999999999887663 23367
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|++|+.+|..+... . +.+....-.|..+||+......||.|.-|+.|.+..........+.|++++.++|+++.
T Consensus 448 ~p~lLygYGaYG~s~-~----p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g 522 (682)
T COG1770 448 APLLLYGYGAYGISM-D----PSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEG 522 (682)
T ss_pred CcEEEEEeccccccC-C----cCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcC
Confidence 899999999766543 2 23333345688999999999999999999999988877777788999999999999999
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------ccccccccccCCCCCCc---cchhcCC
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------YDTFYTEKYMGLPSEDP---VGYEYSS 701 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~ 701 (776)
+.+.++|+++|.|+||+++..++.+.|++|+++|+..|+.|... ....|.|| |.|. ++ +.+..++
T Consensus 523 ~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EW--GNP~-d~e~y~yikSYS 599 (682)
T COG1770 523 YTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEW--GNPL-DPEYYDYIKSYS 599 (682)
T ss_pred cCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhh--CCcC-CHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999987421 11223333 5555 33 3446778
Q ss_pred hhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCCCCe---EEEEecCCCCCC-CCCCcHHHHHHHHHHHHHH
Q 004067 702 VMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPY---EILIFPDERHMP-RRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 702 ~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~---~~~~~~~~~H~~-~~~~~~~~~~~~~~~fl~~ 774 (776)
|.+.+..-. +|+|++.|..|..|.+.+..+..++|++.+... -+.+--.+||.- +..-...+-.+.-.+|+.+
T Consensus 600 PYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~ 677 (682)
T COG1770 600 PYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLK 677 (682)
T ss_pred chhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhh
Confidence 888776643 689999999999999999999999999887543 333334789964 2222223333444455543
No 7
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.96 E-value=1.8e-28 Score=238.89 Aligned_cols=198 Identities=36% Similarity=0.541 Sum_probs=173.4
Q ss_pred hhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 579 ~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
...++|+++||+|+.+|+||++++|..|.......++..+++|+.+++++++++..+|++||+|+|+|+||++++.++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 35788999999999999999999999999988888888899999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCCCCCccccccc---ccc-ccc--CCCCCCccchhcCChhhhhcc--CCCcEEEEecCCCCccChHHHH
Q 004067 659 FPDVFQCAVSGAPVTSWDGYDTF---YTE-KYM--GLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 659 ~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~~ 730 (776)
+|++|+++++.+|+.++..+... +.. ++. +.++...+.|...+++..+.+ +++|+|++||++|.+||+.++.
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~ 164 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPSQSL 164 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTHHHH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHHHHH
Confidence 99999999999999987654322 322 222 445556677888888888888 8899999999999999999999
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++++|++.+++++++++|+++|.+...+...+....+.+||+++|
T Consensus 165 ~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 165 RLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp HHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998878888899999999999986
No 8
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.94 E-value=2e-23 Score=213.39 Aligned_cols=293 Identities=19% Similarity=0.236 Sum_probs=236.9
Q ss_pred EEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCC
Q 004067 470 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRY 549 (776)
Q Consensus 470 ~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~ 549 (776)
.+-+.||..+.+...+...|+.+++.+..+++ .+.+-. ...+|+...+ ++++...++.||.+|+++++. ++..
T Consensus 345 ~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-Le~ik~---~p~~FDa~~~-~veQ~~atSkDGT~IPYFiv~-K~~~- 417 (648)
T COG1505 345 GSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-LEVIRE---QPVQFDADNY-EVEQFFATSKDGTRIPYFIVR-KGAK- 417 (648)
T ss_pred ccCCCCCcEEEEEeecccCCCceEEEecCCce-ehhhhh---ccCCcCccCc-eEEEEEEEcCCCccccEEEEe-cCCc-
Confidence 36667899999999999999999999986664 333322 2235655555 778888888999999999998 5532
Q ss_pred CCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 550 GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 550 ~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
. .+.|++|+-+||...... +.+......+.++|.+.+..+.||.|++|..|+.+....-.+..++|+.++++.|
T Consensus 418 ~-d~~pTll~aYGGF~vslt-----P~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedL 491 (648)
T COG1505 418 K-DENPTLLYAYGGFNISLT-----PRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDL 491 (648)
T ss_pred C-CCCceEEEeccccccccC-----CccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 1 267999999998665442 2333445677889999999999999999999999888777778899999999999
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-----ccccccCCCCC--CccchhcCCh
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----YTEKYMGLPSE--DPVGYEYSSV 702 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~ 702 (776)
+++++..+++++|.|.|-||.++..++.++|+.|.|+|+..|+.||..|..+ |...| |.|.. +.....+++|
T Consensus 492 i~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EY-G~Pd~P~d~~~l~~YSP 570 (648)
T COG1505 492 IKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEY-GNPDDPEDRAFLLAYSP 570 (648)
T ss_pred HHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhc-CCCCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999877543 23333 44432 2345678899
Q ss_pred hhhhccCC--CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH-HHHHHHHHHHHHHhC
Q 004067 703 MHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR-IYMEERIWEFIERTL 776 (776)
Q Consensus 703 ~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~fl~~~l 776 (776)
.++++.-+ +|+||..+.+|++|+|.++..++.+|++.+.++-+.+--++||.-..+... ......+..||.+.|
T Consensus 571 y~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 571 YHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred hhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 88887643 799999999999999999999999999999988888888999987555444 567788889998875
No 9
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=2.2e-23 Score=223.57 Aligned_cols=255 Identities=18% Similarity=0.201 Sum_probs=191.5
Q ss_pred CEEEEEeCCC-CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 67 NLITYLLSPD-HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 67 ~~ia~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
++|||+.... +....+||++|.+|++.++++... ..+..+.||| ||++|+|.
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~------------------------~~~~~p~wSP---DG~~la~~ 216 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP------------------------QPLMSPAWSP---DGSKLAYV 216 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC------------------------CceeeeEEcC---CCCEEEEE
Confidence 7899998743 233569999999999999998632 2467899999 99999986
Q ss_pred ----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecC
Q 004067 146 ----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 146 ----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
...+||++|+.+|+.+ .++..+.. ...+.|||||++|+|+.. .+||++++++++.++++.....
T Consensus 217 s~~~g~~~i~i~dl~~G~~~-~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~------ 288 (429)
T PRK03629 217 TFESGRSALVIQTLANGAVR-QVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN------ 288 (429)
T ss_pred EecCCCcEEEEEECCCCCeE-EccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCC------
Confidence 2357999999999888 77765543 567999999999999864 2699999999999998765421
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
...+.|||||++|+|.+.+.+ ..+||++|+++++.
T Consensus 289 ------------~~~~~wSPDG~~I~f~s~~~g---------------------------------~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 289 ------------NTEPTWFPDSQNLAYTSDQAG---------------------------------RPQVYKVNINGGAP 323 (429)
T ss_pred ------------cCceEECCCCCEEEEEeCCCC---------------------------------CceEEEEECCCCCe
Confidence 336789999999999874321 14689999999988
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
++++. .......+.|||||+.|++..... ....|+++|+++++.+.++... ....+.|+|
T Consensus 324 ~~lt~---------~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~Lt~~~----~~~~p~~Sp------ 383 (429)
T PRK03629 324 QRITW---------EGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLTDTF----LDETPSIAP------ 383 (429)
T ss_pred EEeec---------CCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEEeCCCC----CCCCceECC------
Confidence 87743 223345689999999888876544 3567999999999988887431 112233333
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
++..++|.+...+...|++++++|+..++|+.++..+..+ .|||
T Consensus 384 -DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p-~Wsp 427 (429)
T PRK03629 384 -NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP-AWSP 427 (429)
T ss_pred -CCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCc-ccCC
Confidence 4455888887777778999999999888898655444444 3775
No 10
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=1.9e-23 Score=222.87 Aligned_cols=265 Identities=14% Similarity=0.128 Sum_probs=188.4
Q ss_pred ceeEcCCCCEEEEEeCCCCc----CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 59 SIGFSPDDNLITYLLSPDHS----LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+.++ +++|||+....+. ....||++|.+|+++++||... .....+.|||
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~------------------------~~~~sP~wSP 194 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEH------------------------SLSITPTWMH 194 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCC------------------------CCcccceEcc
Confidence 34445 8999999874321 2458999999999999999632 2356789999
Q ss_pred cCCCceEEE--Ee----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEE--ecCC---
Q 004067 135 TSSKKKIIM--VP----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVL--NLLI--- 199 (776)
Q Consensus 135 ~~~dg~~l~--~~----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~--~l~~--- 199 (776)
||+.++ |. ...+||++++++++.+ +++..++. ...|+|||||++|||+++. ++|+. ++++
T Consensus 195 ---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~-~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 195 ---IGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGN-QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ---CCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCC-ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 998744 33 2357999999999988 88876654 6679999999999999853 67774 5554
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|+.++++..... ....+.|||||++|+|.+...+
T Consensus 270 g~~~~lt~~~~~-----------------~~~~p~wSPDG~~Laf~s~~~g----------------------------- 303 (428)
T PRK01029 270 GKPRRLLNEAFG-----------------TQGNPSFSPDGTRLVFVSNKDG----------------------------- 303 (428)
T ss_pred CcceEeecCCCC-----------------CcCCeEECCCCCEEEEEECCCC-----------------------------
Confidence 466777754321 0235789999999999874321
Q ss_pred CCCCeEEEEEEEcCC--CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 280 ASNVKVRLGVVSAAG--GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..+||++++++ ++.+.++ .....+..+.|||||+.|++...+. +...|++||+++|+.+.++..
T Consensus 304 ----~~~ly~~~~~~~g~~~~~lt---------~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 304 ----RPRIYIMQIDPEGQSPRLLT---------KKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred ----CceEEEEECcccccceEEec---------cCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCCeEEccCC
Confidence 14578887753 4455553 2234556799999999998886544 456899999999999988754
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCC
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEAS 425 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg 425 (776)
... ...+.|+| ++..++|.+...+...||++++++++.++|+.....+.. +.|||-.
T Consensus 370 ~~~---~~~p~wSp-------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~-p~Ws~~~ 426 (428)
T PRK01029 370 PEN---KESPSWAI-------DSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRF-PSWGAFP 426 (428)
T ss_pred CCC---ccceEECC-------CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccC-ceecCCC
Confidence 211 11122322 345588888777788999999999999999876544444 3487643
No 11
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-22 Score=205.95 Aligned_cols=295 Identities=17% Similarity=0.213 Sum_probs=218.6
Q ss_pred cCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCC-chhhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCC
Q 004067 473 DHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPL-TVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP 551 (776)
Q Consensus 473 spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~ 551 (776)
.-+.+.+.|..++.-.|+.||.+|+..|.....++++.. ..+.++.-.. ..+++.+++.||..++..|+.-+.. ...
T Consensus 390 ~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y-~~~r~~~~SkDGt~VPM~Iv~kk~~-k~d 467 (712)
T KOG2237|consen 390 DFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDY-VVERIEVSSKDGTKVPMFIVYKKDI-KLD 467 (712)
T ss_pred CCCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccce-EEEEEEEecCCCCccceEEEEechh-hhc
Confidence 456778999999999999999999998844333332211 1233433333 5788999999999999999984332 333
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
++.|++|+.||+.+.. +...|... ...|.+.|++.+..|.||.|+.|..|...+.....+..++|+++++++|++
T Consensus 468 g~~P~LLygYGay~is-l~p~f~~s----rl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve 542 (712)
T KOG2237|consen 468 GSKPLLLYGYGAYGIS-LDPSFRAS----RLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVE 542 (712)
T ss_pred CCCceEEEEeccccee-eccccccc----eeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHH
Confidence 5789999999986654 34455433 234556999999999999999999999888777777889999999999999
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc-----cccccc--cCCCCCCccchhcCChhh
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-----FYTEKY--MGLPSEDPVGYEYSSVMH 704 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~ 704 (776)
+++..++++++.|.|.||.++..++.++|++|+|+++..|+.|+..+.. .+...| .+.|. +...+...+++.
T Consensus 543 ~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~-~~~~~~~i~~y~ 621 (712)
T KOG2237|consen 543 NGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPE-DFEDLIKISPYS 621 (712)
T ss_pred cCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChh-hhhhhheecccC
Confidence 9999999999999999999999999999999999999999998654321 122221 13333 223333444444
Q ss_pred hhccCC-----CcEEEEecCCCCccChHHHHHHHHHHHHCC-------CCeEEEEecCCCCCCCCC-CcHHHHHHHHHHH
Q 004067 705 HVHKMK-----GKLLLVHGMIDENVHFRHTARLINALVAAR-------KPYEILIFPDERHMPRRH-RDRIYMEERIWEF 771 (776)
Q Consensus 705 ~~~~i~-----~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~f 771 (776)
.+.+++ +-||+..+.+|++|.+.++..+.++|+..- .++-+.+..++||....+ ....+-.+...+|
T Consensus 622 pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaF 701 (712)
T KOG2237|consen 622 PVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAF 701 (712)
T ss_pred ccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHH
Confidence 444443 468999999999999999999998887642 357788889999987432 2234455667777
Q ss_pred HHHh
Q 004067 772 IERT 775 (776)
Q Consensus 772 l~~~ 775 (776)
|.+.
T Consensus 702 l~K~ 705 (712)
T KOG2237|consen 702 LAKM 705 (712)
T ss_pred HHHH
Confidence 7664
No 12
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=4.5e-23 Score=222.89 Aligned_cols=255 Identities=14% Similarity=0.155 Sum_probs=189.1
Q ss_pred CCEEEEEeCCCCc--CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 66 DNLITYLLSPDHS--LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 66 G~~ia~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
..+|||++...+. ...+||++|.+|++.++++.+. ..+..+.||| ||++|+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~------------------------~~v~~p~wSp---DG~~la 217 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGS------------------------SLVLTPRFSP---NRQEIT 217 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCC------------------------CCeEeeEECC---CCCEEE
Confidence 4589999875442 2469999999999999998643 2578899999 999999
Q ss_pred EeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCcee
Q 004067 144 VPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 144 ~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
|.. +.+||+||+.+++.+ .++..++ ....+.|||||+.|+|... .+||++++++++.++|+.....
T Consensus 218 y~s~~~g~~~i~~~dl~~g~~~-~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~---- 291 (435)
T PRK05137 218 YMSYANGRPRVYLLDLETGQRE-LVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAI---- 291 (435)
T ss_pred EEEecCCCCEEEEEECCCCcEE-EeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCc----
Confidence 973 357999999999888 7776554 3678999999999999864 3699999999999999864421
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
...+.|||||++|+|.+...+ ..+||++|++++
T Consensus 292 --------------~~~~~~spDG~~i~f~s~~~g---------------------------------~~~Iy~~d~~g~ 324 (435)
T PRK05137 292 --------------DTSPSYSPDGSQIVFESDRSG---------------------------------SPQLYVMNADGS 324 (435)
T ss_pred --------------cCceeEcCCCCEEEEEECCCC---------------------------------CCeEEEEECCCC
Confidence 235789999999999874321 146899999999
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+.+.++. .......+.|||||+.|++..... ....|+++|++++..+.++... ....+.|+|
T Consensus 325 ~~~~lt~---------~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~~~lt~~~----~~~~p~~sp---- 386 (435)
T PRK05137 325 NPRRISF---------GGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGERILTSGF----LVEGPTWAP---- 386 (435)
T ss_pred CeEEeec---------CCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCceEeccCCC----CCCCCeECC----
Confidence 8888843 233455689999999888876433 4578999999888777665421 112223333
Q ss_pred ccccCCeEEEEeccCCc---eEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 376 VTKYSGGFIWASEKTGF---RHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~---~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
+++.++|.++..+. ..||++++++++.++|+.. ..+..+ .|||
T Consensus 387 ---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~-~~~~~p-~Wsp 432 (435)
T PRK05137 387 ---NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTP-GDASDP-AWSP 432 (435)
T ss_pred ---CCCEEEEEEccCCCCCcceEEEEECCCCceEEccCC-CCccCc-ccCC
Confidence 34557887766554 6899999999988888753 233333 4765
No 13
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=3.4e-23 Score=220.90 Aligned_cols=210 Identities=17% Similarity=0.190 Sum_probs=158.9
Q ss_pred CceeEcCCCCE--EEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNL--ITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~--ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+|+|||||+. ++|++...+ ..+||++++++|+.++|+..+. ....+.|||
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~~l~~g~~~~lt~~~g------------------------~~~~p~wSP- 240 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLG--VPKIFLGSLENPAGKKILALQG------------------------NQLMPTFSP- 240 (428)
T ss_pred ccceEccCCCceEEEEEEccCC--CceEEEEECCCCCceEeecCCC------------------------CccceEECC-
Confidence 68999999988 566887654 4799999999999999986433 345689999
Q ss_pred CCCceEEEEeCC----CcEEE--EeCCC---CccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCC--C
Q 004067 136 SSKKKIIMVPLP----DGIYF--QDLSC---SKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLI--N 200 (776)
Q Consensus 136 ~~dg~~l~~~~~----~~l~~--~d~~~---~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~--g 200 (776)
||++|+|..+ .++|+ +++++ ++.+ +++.........|.|||||++|+|+++. +||++++++ +
T Consensus 241 --DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~-~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 241 --RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPR-RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred --CCCEEEEEECCCCCcceeEEEeecccCCCCcce-EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9999999853 36777 46654 4555 6765433335679999999999999852 699998863 5
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
..++++..... ...+.|||||++|+|.+.+.+
T Consensus 318 ~~~~lt~~~~~------------------~~~p~wSPDG~~Laf~~~~~g------------------------------ 349 (428)
T PRK01029 318 SPRLLTKKYRN------------------SSCPAWSPDGKKIAFCSVIKG------------------------------ 349 (428)
T ss_pred ceEEeccCCCC------------------ccceeECCCCCEEEEEEcCCC------------------------------
Confidence 56777754321 236789999999999874321
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 358 (776)
..+|+++|+++++.+.++. .......+.|||||+.|++..... ....||++|+++++.+.++...
T Consensus 350 ---~~~I~v~dl~~g~~~~Lt~---------~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 350 ---VRQICVYDLATGRDYQLTT---------SPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred ---CcEEEEEECCCCCeEEccC---------CCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEeecCC
Confidence 1568999999999888743 223456799999999888876544 4578999999999998888643
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.1e-22 Score=215.27 Aligned_cols=210 Identities=10% Similarity=0.104 Sum_probs=163.1
Q ss_pred CceeEcCCCCE-EEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNL-ITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~-ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
..|+|||||++ ++|.+...+ ..+||++|+++|+.++|+..+. ....+.|||
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~--~~~Iyv~dl~tg~~~~lt~~~g------------------------~~~~~~~SP-- 242 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGER--KPTLYKYNLYTGKKEKIASSQG------------------------MLVVSDVSK-- 242 (419)
T ss_pred EeEEECCCCCcEEEEEEccCC--CCEEEEEECCCCcEEEEecCCC------------------------cEEeeEECC--
Confidence 58999999997 666666432 3699999999999999986322 345688999
Q ss_pred CCceEEEEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeC
Q 004067 137 SKKKIIMVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 137 ~dg~~l~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~ 208 (776)
||++|+|.. +.+||++|+++++.+ +||..+. ....+.|||||++|+|+++. +||++++++|+.++++..
T Consensus 243 -DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 243 -DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred -CCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 999999973 367999999999988 8887664 35679999999999999975 899999999999999875
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+.. ...|||||+.|+|........ ......+|+
T Consensus 320 g~~--------------------~~~~SPDG~~Ia~~~~~~~~~---------------------------~~~~~~~I~ 352 (419)
T PRK04043 320 GKN--------------------NSSVSTYKNYIVYSSRETNNE---------------------------FGKNTFNLY 352 (419)
T ss_pred CCc--------------------CceECCCCCEEEEEEcCCCcc---------------------------cCCCCcEEE
Confidence 421 236999999999987432110 000126799
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
++|+++++.+.|+. . .....++|||||+.|++....+ ....|+++++++....++..
T Consensus 353 v~d~~~g~~~~LT~---------~-~~~~~p~~SPDG~~I~f~~~~~-~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 353 LISTNSDYIRRLTA---------N-GVNQFPRFSSDGGSIMFIKYLG-NQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEECCCCCeEECCC---------C-CCcCCeEECCCCCEEEEEEccC-CcEEEEEEecCCCeeEEeec
Confidence 99999999888743 1 1233599999999998887664 66789999998877777754
No 15
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.4e-22 Score=218.70 Aligned_cols=256 Identities=19% Similarity=0.216 Sum_probs=188.9
Q ss_pred CCEEEEEeCCCC--cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 66 DNLITYLLSPDH--SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 66 G~~ia~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
+.+|||+..... ....+||++|.++++.++++.+. ..+..+.||| ||++|+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~------------------------~~v~~p~wSp---Dg~~la 219 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSA------------------------EPILSPAWSP---DGKKLA 219 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCC------------------------CccccccCCC---CCCEEE
Confidence 457999876322 22458999999999999998642 2567889999 999999
Q ss_pred EeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCcee
Q 004067 144 VPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 144 ~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
|.. ..+||++|+.+++.+ .++..++ ....++|||||++|+|+.. .+||++++++|+.++++.....
T Consensus 220 ~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~---- 293 (433)
T PRK04922 220 YVSFERGRSAIYVQDLATGQRE-LVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGI---- 293 (433)
T ss_pred EEecCCCCcEEEEEECCCCCEE-EeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCC----
Confidence 973 346999999999887 7765543 3567999999999999863 2699999999999888764321
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
...+.|||||++|+|.+...+ ..+||+++++++
T Consensus 294 --------------~~~~~~spDG~~l~f~sd~~g---------------------------------~~~iy~~dl~~g 326 (433)
T PRK04922 294 --------------DTEPTWAPDGKSIYFTSDRGG---------------------------------RPQIYRVAASGG 326 (433)
T ss_pred --------------ccceEECCCCCEEEEEECCCC---------------------------------CceEEEEECCCC
Confidence 235789999999999874321 146899999999
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
+.+.++. ...+...++|||||+.|++.... .+...|++||++++..+.++... + ...+.|+
T Consensus 327 ~~~~lt~---------~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~-~~~p~~s----- 387 (433)
T PRK04922 327 SAERLTF---------QGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---L-DESPSFA----- 387 (433)
T ss_pred CeEEeec---------CCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---C-CCCceEC-----
Confidence 8887743 22334468999999988887643 34568999999999988776432 1 1122233
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.++..++|.++..|...||+++++|+..++|+.+...+..+ .|||
T Consensus 388 --pdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p-~wsp 432 (433)
T PRK04922 388 --PNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREP-AWSP 432 (433)
T ss_pred --CCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCC-ccCC
Confidence 34455888888888889999999998888887654434433 3665
No 16
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.1e-22 Score=216.50 Aligned_cols=253 Identities=16% Similarity=0.180 Sum_probs=187.0
Q ss_pred CEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeC
Q 004067 67 NLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPL 146 (776)
Q Consensus 67 ~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~ 146 (776)
.+|||++...+ ..+||++|.++...++++... ..+..+.||| ||++|+|..
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~------------------------~~v~~p~wSP---DG~~la~~s 214 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSP------------------------EPIISPAWSP---DGTKLAYVS 214 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCC------------------------CCcccceEcC---CCCEEEEEE
Confidence 57999986433 468999999998888887532 2567889999 999999973
Q ss_pred ----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCC
Q 004067 147 ----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGL 218 (776)
Q Consensus 147 ----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~ 218 (776)
..+||++|+.+++.+ .++..+. ....+.|||||++|+|... .+||+++++++..++++.....
T Consensus 215 ~~~~~~~I~~~dl~~g~~~-~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~------- 285 (427)
T PRK02889 215 FESKKPVVYVHDLATGRRR-VVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGI------- 285 (427)
T ss_pred ccCCCcEEEEEECCCCCEE-EeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCC-------
Confidence 245999999999887 7765553 3678999999999999764 2699999999988888764321
Q ss_pred cccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE
Q 004067 219 AEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS 298 (776)
Q Consensus 219 ~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 298 (776)
...+.|||||++|+|.+...+. .+||++++++++..
T Consensus 286 -----------~~~~~wSpDG~~l~f~s~~~g~---------------------------------~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 286 -----------DTEPFFSPDGRSIYFTSDRGGA---------------------------------PQIYRMPASGGAAQ 321 (427)
T ss_pred -----------CcCeEEcCCCCEEEEEecCCCC---------------------------------cEEEEEECCCCceE
Confidence 2356799999999998643211 46889999888877
Q ss_pred EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccc
Q 004067 299 WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTK 378 (776)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (776)
.+... ..+...++|||||+.|++.+..+ ....|+++|+++++.+.++... + ...+.|+ .
T Consensus 322 ~lt~~---------g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~~---~-~~~p~~s-------p 380 (427)
T PRK02889 322 RVTFT---------GSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQVTALTDTT---R-DESPSFA-------P 380 (427)
T ss_pred EEecC---------CCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCCeEEccCCC---C-ccCceEC-------C
Confidence 77532 22344689999999998886554 4568999999999988887532 1 1122233 3
Q ss_pred cCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 379 YSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 379 ~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
++..++|.++..|...||.++++|+..+.++.....+..+ .|||
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p-~wsp 424 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREP-SWGP 424 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCC-ccCC
Confidence 4555888888888889999999988777776543333333 4765
No 17
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.9e-22 Score=213.32 Aligned_cols=243 Identities=11% Similarity=0.045 Sum_probs=182.1
Q ss_pred CEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceE-EEEe
Q 004067 67 NLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKI-IMVP 145 (776)
Q Consensus 67 ~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~-l~~~ 145 (776)
.+|+|++...+....+||++|.+|.+.++++.. .....+.||| ||++ ++|.
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-------------------------~~~~~p~wSp---DG~~~i~y~ 206 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-------------------------GLNIFPKWAN---KEQTAFYYT 206 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccC-------------------------CCeEeEEECC---CCCcEEEEE
Confidence 467777763333357999999999998888851 2345789999 9996 6664
Q ss_pred ----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecC
Q 004067 146 ----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 146 ----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
...+||++|+.+++.+ +++..++ ....+.|||||++|+|... .+||++++++|+.++||.....
T Consensus 207 s~~~~~~~Iyv~dl~tg~~~-~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~------ 278 (419)
T PRK04043 207 SYGERKPTLYKYNLYTGKKE-KIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI------ 278 (419)
T ss_pred EccCCCCEEEEEECCCCcEE-EEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc------
Confidence 2457999999999998 8876544 3567899999999999875 4799999999999999865431
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
...+.|||||++|+|.+...+ ..+||++|+++|+.
T Consensus 279 ------------d~~p~~SPDG~~I~F~Sdr~g---------------------------------~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 279 ------------DVNGNFVEDDKRIVFVSDRLG---------------------------------YPNIFMKKLNSGSV 313 (419)
T ss_pred ------------cCccEECCCCCEEEEEECCCC---------------------------------CceEEEEECCCCCe
Confidence 124579999999999884321 15799999999998
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-----ceEEEEEEECCCCceEEEEEeccCceeecccccccC
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-----TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
+++... ... .+.|||||+.|++...... ...+|+++|+++|+.+.|+.... ...+.|+|
T Consensus 314 ~rlt~~---------g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~----~~~p~~SP- 377 (419)
T PRK04043 314 EQVVFH---------GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV----NQFPRFSS- 377 (419)
T ss_pred EeCccC---------CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC----cCCeEECC-
Confidence 877431 111 3589999998888876542 23689999999999999887421 11233433
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
++..++|++...+...|+.++++|....+|....
T Consensus 378 ------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~ 411 (419)
T PRK04043 378 ------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKV 411 (419)
T ss_pred ------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCC
Confidence 4555888888888889999999998887776543
No 18
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.7e-22 Score=215.99 Aligned_cols=255 Identities=18% Similarity=0.230 Sum_probs=188.2
Q ss_pred CEEEEEeCCCCc-CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 67 NLITYLLSPDHS-LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 67 ~~ia~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
.+|||+....+. ...+||++|.+|.+.++++..+. .+..+.||| ||++|+|.
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~------------------------~~~~p~wSP---DG~~La~~ 235 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPE------------------------PLMSPAWSP---DGRKLAYV 235 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCC------------------------cccCceECC---CCCEEEEE
Confidence 478888764432 24589999999999888886432 566889999 99999997
Q ss_pred C----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecC
Q 004067 146 L----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 146 ~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
. ..+||++|+.+++.+ .++..+.. ...+.|||||+.|+|+.+. +||++++++++.++++.....
T Consensus 236 s~~~g~~~L~~~dl~tg~~~-~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~------ 307 (448)
T PRK04792 236 SFENRKAEIFVQDIYTQVRE-KVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAI------ 307 (448)
T ss_pred EecCCCcEEEEEECCCCCeE-EecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCC------
Confidence 3 236999999999887 77665432 5679999999999998642 599999999999988764321
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
...+.|||||++|+|.+...+ ..+||++|+++++.
T Consensus 308 ------------~~~p~wSpDG~~I~f~s~~~g---------------------------------~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 308 ------------DTEPSWHPDGKSLIFTSERGG---------------------------------KPQIYRVNLASGKV 342 (448)
T ss_pred ------------ccceEECCCCCEEEEEECCCC---------------------------------CceEEEEECCCCCE
Confidence 235789999999999874221 15789999999998
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCcc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
+.++.. ......++|||||+.|++..... ....|+++|+++++.+.++... + +..+.|+
T Consensus 343 ~~Lt~~---------g~~~~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~~g~~~~lt~~~---~-d~~ps~s------- 401 (448)
T PRK04792 343 SRLTFE---------GEQNLGGSITPDGRSMIMVNRTN-GKFNIARQDLETGAMQVLTSTR---L-DESPSVA------- 401 (448)
T ss_pred EEEecC---------CCCCcCeeECCCCCEEEEEEecC-CceEEEEEECCCCCeEEccCCC---C-CCCceEC-------
Confidence 887531 12234579999999888876543 4568999999999988876432 1 1122233
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.++..++|.+..+|...||+++++|+..+.++.....+..+ .|||
T Consensus 402 pdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p-~Wsp 446 (448)
T PRK04792 402 PNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSP-AWSP 446 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCC-ccCC
Confidence 34556888888888889999999998888887654333333 4765
No 19
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=5e-22 Score=213.13 Aligned_cols=244 Identities=17% Similarity=0.174 Sum_probs=181.2
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.+||++|.+++..+ .++.+.. .+..|+|||||++|+|++. .+||++++.+|+.++++.....
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~------------ 244 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH------------ 244 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC------------
Confidence 37999999999888 7777654 4789999999999999863 3699999999999888754332
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...+.|||||++|+|.....+ ..+||+||+++++.++++
T Consensus 245 ------~~~~~~SPDG~~La~~~~~~g---------------------------------~~~I~~~d~~tg~~~~lt-- 283 (429)
T PRK03629 245 ------NGAPAFSPDGSKLAFALSKTG---------------------------------SLNLYVMDLASGQIRQVT-- 283 (429)
T ss_pred ------cCCeEECCCCCEEEEEEcCCC---------------------------------CcEEEEEECCCCCEEEcc--
Confidence 235789999999999763211 146899999999988773
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.....+..+.|||||+.|++.+++. ....||++|+++++.++++...... ....| +.+++.+
T Consensus 284 -------~~~~~~~~~~wSPDG~~I~f~s~~~-g~~~Iy~~d~~~g~~~~lt~~~~~~---~~~~~-------SpDG~~I 345 (429)
T PRK03629 284 -------DGRSNNTEPTWFPDSQNLAYTSDQA-GRPQVYKVNINGGAPQRITWEGSQN---QDADV-------SSDGKFM 345 (429)
T ss_pred -------CCCCCcCceEECCCCCEEEEEeCCC-CCceEEEEECCCCCeEEeecCCCCc---cCEEE-------CCCCCEE
Confidence 2334567799999999999988765 3468999999999888886532211 11122 3345567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
++.+..++..+||++++++++.++|+... .... +.|||||+.|+|.+...+. ..|+.+++ +|. ..++|+.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~-p~~SpDG~~i~~~s~~~~~--~~l~~~~~--~G~----~~~~l~~ 415 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDET-PSIAPNGTMVIYSSSQGMG--SVLNLVST--DGR----FKARLPA 415 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCC-CCCC-ceECCCCCEEEEEEcCCCc--eEEEEEEC--CCC----CeEECcc
Confidence 88777777789999999999999998643 2233 4599999999999886543 57888888 564 5666765
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ +..++|||
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 443 45667776
No 20
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=6.3e-22 Score=213.99 Aligned_cols=246 Identities=11% Similarity=0.103 Sum_probs=180.9
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.+||++|.+++..+ .++.+.. .+..|.|||||++|+|++. .+||++++.+|+.++++.....
T Consensus 182 ~~l~~~d~dg~~~~-~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~------------ 247 (435)
T PRK05137 182 KRLAIMDQDGANVR-YLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGM------------ 247 (435)
T ss_pred eEEEEECCCCCCcE-EEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCc------------
Confidence 47999999999888 8887654 4889999999999999974 4699999999999888754321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.++++
T Consensus 248 ------~~~~~~SPDG~~la~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~Lt-- 286 (435)
T PRK05137 248 ------TFAPRFSPDGRKVVMSLSQGG---------------------------------NTDIYTMDLRSGTTTRLT-- 286 (435)
T ss_pred ------ccCcEECCCCCEEEEEEecCC---------------------------------CceEEEEECCCCceEEcc--
Confidence 336789999999998764221 156899999999988773
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
........+.|||||+.|++.+++. ....||++|++++..++++..... + ..+.|+| +++.+
T Consensus 287 -------~~~~~~~~~~~spDG~~i~f~s~~~-g~~~Iy~~d~~g~~~~~lt~~~~~-~--~~~~~Sp-------dG~~i 348 (435)
T PRK05137 287 -------DSPAIDTSPSYSPDGSQIVFESDRS-GSPQLYVMNADGSNPRRISFGGGR-Y--STPVWSP-------RGDLI 348 (435)
T ss_pred -------CCCCccCceeEcCCCCEEEEEECCC-CCCeEEEEECCCCCeEEeecCCCc-c--cCeEECC-------CCCEE
Confidence 3334556799999999999887655 356899999999999988764321 1 1122333 45567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCc-eeeEEEEEeCCCCCCccccceeec
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL-ESHLYCAKLYPDWNHTLEAPVKLT 462 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~-~~~l~~~~~~~~g~~~~~~~~~l~ 462 (776)
+|.+...+..+|++++++++..+.++... .+..+ .|||||+.|+|.+...+.. ...||.+++ +|. ..+.|+
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~~~~lt~~~-~~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl--~g~----~~~~l~ 420 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSGERILTSGF-LVEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDL--TGR----NEREVP 420 (435)
T ss_pred EEEEcCCCceEEEEEECCCCceEeccCCC-CCCCC-eECCCCCEEEEEEccCCCCCcceEEEEEC--CCC----ceEEcc
Confidence 88776667789999999988888887643 33344 5999999999998754321 147999998 454 445666
Q ss_pred CCCCeEEEEEcC
Q 004067 463 NGKGKHVAVLDH 474 (776)
Q Consensus 463 ~~~~~~~~~~sp 474 (776)
.......++|||
T Consensus 421 ~~~~~~~p~Wsp 432 (435)
T PRK05137 421 TPGDASDPAWSP 432 (435)
T ss_pred CCCCccCcccCC
Confidence 433345567776
No 21
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.3e-21 Score=212.16 Aligned_cols=257 Identities=18% Similarity=0.223 Sum_probs=189.4
Q ss_pred CCCEEEEEeCCCC--cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEE
Q 004067 65 DDNLITYLLSPDH--SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKII 142 (776)
Q Consensus 65 DG~~ia~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l 142 (776)
-..+|+|++.... ....+|+++|.+|++.++++.+. ..+..+.||| ||++|
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~------------------------~~~~~p~wSp---DG~~l 213 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR------------------------EPILSPRWSP---DGKRI 213 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC------------------------CceeeeeECC---CCCEE
Confidence 4557999875332 22347999999999988888632 2567889999 99999
Q ss_pred EEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCce
Q 004067 143 MVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 143 ~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+|.. ..+||++|+++++.+ .++...+ ....+.|||||++|+|... .+||++++++++.++++.....
T Consensus 214 a~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~--- 288 (430)
T PRK00178 214 AYVSFEQKRPRIFVQNLDTGRRE-QITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAI--- 288 (430)
T ss_pred EEEEcCCCCCEEEEEECCCCCEE-EccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCC---
Confidence 9973 246999999999888 7776543 3567999999999999864 2699999999999888764321
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
...+.|||||++|+|.+...+ ..+||++++++
T Consensus 289 ---------------~~~~~~spDg~~i~f~s~~~g---------------------------------~~~iy~~d~~~ 320 (430)
T PRK00178 289 ---------------DTEPFWGKDGRTLYFTSDRGG---------------------------------KPQIYKVNVNG 320 (430)
T ss_pred ---------------cCCeEECCCCCEEEEEECCCC---------------------------------CceEEEEECCC
Confidence 235789999999999874221 14689999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
++...+... ......+.|||||+.|++..... ....|+++|+++++.+.++... + ...+.|+
T Consensus 321 g~~~~lt~~---------~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~---~-~~~p~~s---- 382 (430)
T PRK00178 321 GRAERVTFV---------GNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDTS---L-DESPSVA---- 382 (430)
T ss_pred CCEEEeecC---------CCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCCC---C-CCCceEC----
Confidence 998877432 22345689999999988886544 4567999999999988887531 1 1122333
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.++..++|++...|...||.++++|+..+.++.....+..+ .|||
T Consensus 383 ---pdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p-~ws~ 427 (430)
T PRK00178 383 ---PNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREP-SWSP 427 (430)
T ss_pred ---CCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCC-ccCC
Confidence 34556888888888889999999988877776544333433 3665
No 22
>PRK13604 luxD acyl transferase; Provisional
Probab=99.89 E-value=7e-22 Score=193.94 Aligned_cols=213 Identities=14% Similarity=0.106 Sum_probs=154.2
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC-CCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~-g~~ 602 (776)
+....+.+.+|..|.+|+..|++. ..++.++||++||..+... .+..++++|+++||+|+.+|+||+ |.|
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~--~~~~~~~vIi~HGf~~~~~-------~~~~~A~~La~~G~~vLrfD~rg~~GeS 79 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKEN--SPKKNNTILIASGFARRMD-------HFAGLAEYLSSNGFHVIRYDSLHHVGLS 79 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCccc--CCCCCCEEEEeCCCCCChH-------HHHHHHHHHHHCCCEEEEecCCCCCCCC
Confidence 445567778999999999999752 1256789999999766432 245568999999999999999987 888
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc-
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF- 681 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~- 681 (776)
+.++...... . ...|+.++++|++++ +..+|+|+||||||.+++.+|... .++++|+.+|+.++..+...
T Consensus 80 ~G~~~~~t~s-~---g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l~~~ 150 (307)
T PRK13604 80 SGTIDEFTMS-I---GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTLERA 150 (307)
T ss_pred CCccccCccc-c---cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHHHHh
Confidence 6655322211 1 278999999999886 346899999999999987776643 38999999999885422110
Q ss_pred cccc-----ccCCCC---------CCc---------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 682 YTEK-----YMGLPS---------EDP---------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 682 ~~~~-----~~~~~~---------~~~---------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
.... ....|. ... ......+++..+.+++.|+|++||..|..||+..+.++++++..
T Consensus 151 ~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s 230 (307)
T PRK13604 151 LGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS 230 (307)
T ss_pred hhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc
Confidence 0000 000000 000 00112345577888899999999999999999999999998742
Q ss_pred CCCCeEEEEecCCCCCCC
Q 004067 739 ARKPYEILIFPDERHMPR 756 (776)
Q Consensus 739 ~~~~~~~~~~~~~~H~~~ 756 (776)
.+++++++||++|.+.
T Consensus 231 --~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 231 --EQCKLYSLIGSSHDLG 246 (307)
T ss_pred --CCcEEEEeCCCccccC
Confidence 5789999999999884
No 23
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=5.4e-21 Score=205.86 Aligned_cols=244 Identities=17% Similarity=0.196 Sum_probs=180.4
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..|+++|.++...+ .++.... .+..|.|||||++|+|++.. +||++++.+|+.++++.....
T Consensus 198 ~~l~i~d~dG~~~~-~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~------------ 263 (448)
T PRK04792 198 YQLMIADYDGYNEQ-MLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI------------ 263 (448)
T ss_pred eEEEEEeCCCCCce-EeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC------------
Confidence 36899999998887 7776654 47889999999999999753 699999999998888754321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.+.++.
T Consensus 264 ------~~~~~wSPDG~~La~~~~~~g---------------------------------~~~Iy~~dl~tg~~~~lt~- 303 (448)
T PRK04792 264 ------NGAPRFSPDGKKLALVLSKDG---------------------------------QPEIYVVDIATKALTRITR- 303 (448)
T ss_pred ------cCCeeECCCCCEEEEEEeCCC---------------------------------CeEEEEEECCCCCeEECcc-
Confidence 235789999999999763221 2579999999999887733
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.......++|||||+.|++.+++. ...+||++|+++|+.+.++.+.. +. ..+.| +.+++.+
T Consensus 304 --------~~~~~~~p~wSpDG~~I~f~s~~~-g~~~Iy~~dl~~g~~~~Lt~~g~--~~-~~~~~-------SpDG~~l 364 (448)
T PRK04792 304 --------HRAIDTEPSWHPDGKSLIFTSERG-GKPQIYRVNLASGKVSRLTFEGE--QN-LGGSI-------TPDGRSM 364 (448)
T ss_pred --------CCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEEecCCC--CC-cCeeE-------CCCCCEE
Confidence 334456789999999999887665 34689999999999888864221 11 11223 3345568
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+|.+...+..+||++++++++.+.|+..... ..+ .|+|||+.|+|.+..++. ..||.+++ +|. ..+.|+.
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d-~~p-s~spdG~~I~~~~~~~g~--~~l~~~~~--~G~----~~~~l~~ 434 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRLD-ESP-SVAPNGTMVIYSTTYQGK--QVLAAVSI--DGR----FKARLPA 434 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCCC-CCc-eECCCCCEEEEEEecCCc--eEEEEEEC--CCC----ceEECcC
Confidence 8877777778999999999988888865322 223 599999999999876653 57898888 564 4566765
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ ...++|||
T Consensus 435 ~~g~~~~p~Wsp 446 (448)
T PRK04792 435 GQGEVKSPAWSP 446 (448)
T ss_pred CCCCcCCCccCC
Confidence 443 34567776
No 24
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=7.1e-21 Score=204.61 Aligned_cols=244 Identities=16% Similarity=0.167 Sum_probs=178.6
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.+||++|.++...+ .++.... .+..|+|||||++|+|++. .+||++++.+|+.++++.....
T Consensus 176 ~~L~~~D~dG~~~~-~l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~------------ 241 (427)
T PRK02889 176 YQLQISDADGQNAQ-SALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS------------ 241 (427)
T ss_pred cEEEEECCCCCCce-EeccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC------------
Confidence 46999999888877 7765554 4788999999999999985 3599999999998888743321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.++++
T Consensus 242 ------~~~~~~SPDG~~la~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~lt-- 280 (427)
T PRK02889 242 ------NSAPAWSPDGRTLAVALSRDG---------------------------------NSQIYTVNADGSGLRRLT-- 280 (427)
T ss_pred ------ccceEECCCCCEEEEEEccCC---------------------------------CceEEEEECCCCCcEECC--
Confidence 236789999999998753221 157899999988877763
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
........+.|||||+.|++.+++. ....||.++++++..++++.... +. ..+.|+| +++.+
T Consensus 281 -------~~~~~~~~~~wSpDG~~l~f~s~~~-g~~~Iy~~~~~~g~~~~lt~~g~--~~-~~~~~Sp-------DG~~I 342 (427)
T PRK02889 281 -------QSSGIDTEPFFSPDGRSIYFTSDRG-GAPQIYRMPASGGAAQRVTFTGS--YN-TSPRISP-------DGKLL 342 (427)
T ss_pred -------CCCCCCcCeEEcCCCCEEEEEecCC-CCcEEEEEECCCCceEEEecCCC--Cc-CceEECC-------CCCEE
Confidence 3334456689999999999887765 45689999999988888764321 11 1122333 45567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+|.+..++..+|+++++++++.++++..... .. +.|+|||+.|+|.+...+. ..||.+++ +|. ..+.++.
T Consensus 343 a~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~-~~-p~~spdg~~l~~~~~~~g~--~~l~~~~~--~g~----~~~~l~~ 412 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATGQVTALTDTTRD-ES-PSFAPNGRYILYATQQGGR--SVLAAVSS--DGR----IKQRLSV 412 (427)
T ss_pred EEEEccCCcEEEEEEECCCCCeEEccCCCCc-cC-ceECCCCCEEEEEEecCCC--EEEEEEEC--CCC----ceEEeec
Confidence 8888777777999999999988899865332 33 4599999999999887653 67999988 554 4455654
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ +..++|||
T Consensus 413 ~~g~~~~p~wsp 424 (427)
T PRK02889 413 QGGDVREPSWGP 424 (427)
T ss_pred CCCCCCCCccCC
Confidence 433 34567776
No 25
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=5.1e-21 Score=206.59 Aligned_cols=244 Identities=13% Similarity=0.151 Sum_probs=179.2
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..|+++|.+++..+ .++.+.. .+..|+|||||+.|+|++. .+||++++++|+.++++.....
T Consensus 184 ~~l~i~D~~g~~~~-~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~------------ 249 (433)
T PRK04922 184 YALQVADSDGYNPQ-TILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI------------ 249 (433)
T ss_pred EEEEEECCCCCCce-EeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC------------
Confidence 35999999988888 7876654 4789999999999999984 3699999999998888753321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.+.++.
T Consensus 250 ------~~~~~~SpDG~~l~~~~s~~g---------------------------------~~~Iy~~d~~~g~~~~lt~- 289 (433)
T PRK04922 250 ------NGAPSFSPDGRRLALTLSRDG---------------------------------NPEIYVMDLGSRQLTRLTN- 289 (433)
T ss_pred ------ccCceECCCCCEEEEEEeCCC---------------------------------CceEEEEECCCCCeEECcc-
Confidence 235789999999998763221 1469999999998877632
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.......++|||||+.|++.+++. ....||.+|+++++.++++.... +. ....|+ .+++.+
T Consensus 290 --------~~~~~~~~~~spDG~~l~f~sd~~-g~~~iy~~dl~~g~~~~lt~~g~--~~-~~~~~S-------pDG~~I 350 (433)
T PRK04922 290 --------HFGIDTEPTWAPDGKSIYFTSDRG-GRPQIYRVAASGGSAERLTFQGN--YN-ARASVS-------PDGKKI 350 (433)
T ss_pred --------CCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCCeEEeecCCC--Cc-cCEEEC-------CCCCEE
Confidence 333445789999999999988765 34679999999999888874321 11 112233 345567
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
+|.+..++..+|++|++++++.++|+.+.. ...+ .|++||+.|+|.+...+. ..||.+++ +|. ..++|+.
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~-~~~p-~~spdG~~i~~~s~~~g~--~~L~~~~~--~g~----~~~~l~~ 420 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVRTLTPGSL-DESP-SFAPNGSMVLYATREGGR--GVLAAVST--DGR----VRQRLVS 420 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeEECCCCCC-CCCc-eECCCCCEEEEEEecCCc--eEEEEEEC--CCC----ceEEccc
Confidence 787766666799999999999899987643 2333 599999999999886543 68999998 554 5566765
Q ss_pred CCC-eEEEEEcC
Q 004067 464 GKG-KHVAVLDH 474 (776)
Q Consensus 464 ~~~-~~~~~~sp 474 (776)
..+ +..++|||
T Consensus 421 ~~g~~~~p~wsp 432 (433)
T PRK04922 421 ADGEVREPAWSP 432 (433)
T ss_pred CCCCCCCCccCC
Confidence 433 44567776
No 26
>PRK10566 esterase; Provisional
Probab=99.88 E-value=2.7e-21 Score=193.89 Aligned_cols=225 Identities=20% Similarity=0.134 Sum_probs=149.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh-hhhhh--c
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE-ASIKH--N 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~-~~~~~--~ 613 (776)
+....+.|... +.++.|+||++||.+++.. .+..+++.|+++||.|+++|+||+|.+..... ..... .
T Consensus 12 ~~~~~~~p~~~--~~~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~ 82 (249)
T PRK10566 12 IEVLHAFPAGQ--RDTPLPTVFFYHGFTSSKL-------VYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQ 82 (249)
T ss_pred cceEEEcCCCC--CCCCCCEEEEeCCCCcccc-------hHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHH
Confidence 45566667542 2246799999999766543 23446888999999999999999986421100 00000 0
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc-cccccccCCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-FYTEKYMGLPSE 692 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ 692 (776)
......+|+.++++++.++..++.++|+++||||||++++.++.++|+.. +.+...+...+..... .+.......+..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (249)
T PRK10566 83 ILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVK-CVASLMGSGYFTSLARTLFPPLIPETAAQ 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCee-EEEEeeCcHHHHHHHHHhccccccccccc
Confidence 00123577888889998887789999999999999999999999888754 4333322211110000 000000000100
Q ss_pred Cc------cchhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCC--CeEEEEecCCCCCCCCCCcHHH
Q 004067 693 DP------VGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRDRIY 763 (776)
Q Consensus 693 ~~------~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~H~~~~~~~~~~ 763 (776)
.. ..+...++...+.++ ++|+|++||++|.++|+.++.++++++..++. +++++.+++++|.+. ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~ 236 (249)
T PRK10566 162 QAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PE 236 (249)
T ss_pred HHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HH
Confidence 00 111223344455666 68999999999999999999999999988876 478899999999873 35
Q ss_pred HHHHHHHHHHHhC
Q 004067 764 MEERIWEFIERTL 776 (776)
Q Consensus 764 ~~~~~~~fl~~~l 776 (776)
.+..+.+||+++|
T Consensus 237 ~~~~~~~fl~~~~ 249 (249)
T PRK10566 237 ALDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHHhhC
Confidence 6899999999886
No 27
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.1e-20 Score=203.59 Aligned_cols=249 Identities=20% Similarity=0.178 Sum_probs=179.0
Q ss_pred CCEEEEEeCCCC-cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEE
Q 004067 66 DNLITYLLSPDH-SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMV 144 (776)
Q Consensus 66 G~~ia~~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~ 144 (776)
+++|||++...+ ....+||++|.+|.+.++++.+. ..+..+.||| ||++|+|
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~------------------------~~v~~p~wSP---DG~~la~ 220 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS------------------------QPLMSPAWSP---DGSKLAY 220 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC------------------------CccccceEcC---CCCEEEE
Confidence 578999986432 22469999999999888887532 2467899999 9999999
Q ss_pred eC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--C--cEEEEecCCCceeEEeeCCCCCceec
Q 004067 145 PL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--C--ELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 145 ~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~--~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
.. +.+||+||+.+++.+ .++..+. ....++|||||++|+|... + +||++++++++.++++.....
T Consensus 221 ~s~~~~~~~i~i~dl~tg~~~-~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~----- 293 (429)
T PRK01742 221 VSFENKKSQLVVHDLRSGARK-VVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN----- 293 (429)
T ss_pred EEecCCCcEEEEEeCCCCceE-EEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC-----
Confidence 73 246999999998877 6655443 3567999999999999863 2 599999999999888764321
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
...+.|||||++|+|.+...+. .+||.++..++.
T Consensus 294 -------------~~~~~wSpDG~~i~f~s~~~g~---------------------------------~~I~~~~~~~~~ 327 (429)
T PRK01742 294 -------------NTEPSWSPDGQSILFTSDRSGS---------------------------------PQVYRMSASGGG 327 (429)
T ss_pred -------------cCCEEECCCCCEEEEEECCCCC---------------------------------ceEEEEECCCCC
Confidence 3367899999999998743221 467888888777
Q ss_pred eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCc
Q 004067 297 VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV 376 (776)
Q Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 376 (776)
...+.. .. ..+.|||||+.|++... ..|+++|+.+|..+.++... ....+.|+|
T Consensus 328 ~~~l~~----------~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~----~~~~~~~sP----- 381 (429)
T PRK01742 328 ASLVGG----------RG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF----LDESPSISP----- 381 (429)
T ss_pred eEEecC----------CC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC----CCCCceECC-----
Confidence 655521 11 34789999998887753 24788999999887775431 111222333
Q ss_pred cccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecC
Q 004067 377 TKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 377 ~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
++..+++.+.+++...+++++.+|+..++|+.+...+..+ .|||
T Consensus 382 --dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p-~wsp 425 (429)
T PRK01742 382 --NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP-AWSP 425 (429)
T ss_pred --CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc-ccCC
Confidence 3444777776666667888899999889997665444444 4776
No 28
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=2e-20 Score=202.98 Aligned_cols=243 Identities=16% Similarity=0.185 Sum_probs=177.2
Q ss_pred cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCCccccee
Q 004067 149 GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 149 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~ 224 (776)
.|+++|.++++.+ .++.... .+..|.|||||++|+|++.. +||++++++|+.++++.....
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~------------- 244 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL------------- 244 (430)
T ss_pred EEEEECCCCCCce-EEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC-------------
Confidence 4899999998887 7765543 47889999999999999743 699999999999888754321
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEccc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQC 304 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~ 304 (776)
...+.|||||++|+|.....+ ..+||++|+++++.+.++
T Consensus 245 -----~~~~~~SpDG~~la~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~lt--- 283 (430)
T PRK00178 245 -----NGAPAWSPDGSKLAFVLSKDG---------------------------------NPEIYVMDLASRQLSRVT--- 283 (430)
T ss_pred -----cCCeEECCCCCEEEEEEccCC---------------------------------CceEEEEECCCCCeEEcc---
Confidence 235789999999999763221 156899999999888773
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEE
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 384 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (776)
........+.|||||+.|++.+++. ....||++|+++|+.++++...... ..+.| +.+++.++
T Consensus 284 ------~~~~~~~~~~~spDg~~i~f~s~~~-g~~~iy~~d~~~g~~~~lt~~~~~~---~~~~~-------Spdg~~i~ 346 (430)
T PRK00178 284 ------NHPAIDTEPFWGKDGRTLYFTSDRG-GKPQIYKVNVNGGRAERVTFVGNYN---ARPRL-------SADGKTLV 346 (430)
T ss_pred ------cCCCCcCCeEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEeecCCCCc---cceEE-------CCCCCEEE
Confidence 2333455689999999998887665 4568999999999988886432110 11122 33456688
Q ss_pred EEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC
Q 004067 385 WASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 464 (776)
Q Consensus 385 ~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~ 464 (776)
|.+..++..+|+++|+++++.++|+..... ..+ .|||||+.|+|.+...+. ..||.+++ +|. ..++|+..
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~-~~p-~~spdg~~i~~~~~~~g~--~~l~~~~~--~g~----~~~~l~~~ 416 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVRILTDTSLD-ESP-SVAPNGTMLIYATRQQGR--GVLMLVSI--NGR----VRLPLPTA 416 (430)
T ss_pred EEEccCCceEEEEEECCCCCEEEccCCCCC-CCc-eECCCCCEEEEEEecCCc--eEEEEEEC--CCC----ceEECcCC
Confidence 887767777899999999999999875332 233 599999999999876543 67999998 554 34456544
Q ss_pred CC-eEEEEEcC
Q 004067 465 KG-KHVAVLDH 474 (776)
Q Consensus 465 ~~-~~~~~~sp 474 (776)
.+ +..++|||
T Consensus 417 ~g~~~~p~ws~ 427 (430)
T PRK00178 417 QGEVREPSWSP 427 (430)
T ss_pred CCCcCCCccCC
Confidence 33 34567776
No 29
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.87 E-value=9.8e-21 Score=198.02 Aligned_cols=241 Identities=18% Similarity=0.195 Sum_probs=163.9
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
.+.+...+...||.++++..+.|.... .+.++||++||.+.... | .+..++..|+++||.|+++|+||+|.
T Consensus 30 ~~~~~~~~~~~dg~~l~~~~~~~~~~~---~~~~~VvllHG~~~~~~----~--~~~~~~~~L~~~Gy~V~~~D~rGhG~ 100 (330)
T PLN02298 30 IKGSKSFFTSPRGLSLFTRSWLPSSSS---PPRALIFMVHGYGNDIS----W--TFQSTAIFLAQMGFACFALDLEGHGR 100 (330)
T ss_pred CccccceEEcCCCCEEEEEEEecCCCC---CCceEEEEEcCCCCCcc----e--ehhHHHHHHHhCCCEEEEecCCCCCC
Confidence 356677888889999999999886421 35689999999754321 2 23334677889999999999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-c-
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-D- 679 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-~- 679 (776)
|..... .........+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|....... .
T Consensus 101 S~~~~~---~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 177 (330)
T PLN02298 101 SEGLRA---YVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRP 177 (330)
T ss_pred CCCccc---cCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCC
Confidence 853211 00001123678899999887754334558999999999999999999999999999999886432110 0
Q ss_pred c-------cccccccC----CCCC------------------CccchhcC--------------ChhhhhccCCCcEEEE
Q 004067 680 T-------FYTEKYMG----LPSE------------------DPVGYEYS--------------SVMHHVHKMKGKLLLV 716 (776)
Q Consensus 680 ~-------~~~~~~~~----~~~~------------------~~~~~~~~--------------~~~~~~~~i~~P~lii 716 (776)
. .+..++.. .+.. +...+... .....+.++++|+|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii 257 (330)
T PLN02298 178 PWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVL 257 (330)
T ss_pred chHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEE
Confidence 0 00000000 0000 00000000 0122356788999999
Q ss_pred ecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC---CcHHHHHHHHHHHHHHhC
Q 004067 717 HGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 717 ~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~fl~~~l 776 (776)
||.+|.++|+..+..+++.+.. .+.+++++++++|.+... ...+.+...+.+||.+++
T Consensus 258 ~G~~D~ivp~~~~~~l~~~i~~--~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 258 HGSADVVTDPDVSRALYEEAKS--EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred ecCCCCCCCHHHHHHHHHHhcc--CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887742 356899999999987432 224668889999998764
No 30
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.87 E-value=3.9e-21 Score=181.88 Aligned_cols=242 Identities=15% Similarity=0.183 Sum_probs=172.6
Q ss_pred CCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 520 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 520 ~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
.......-.+++++|..+....|.|.... ++..+|+++||..+... | .+...+..|+..||.|+++|++||
T Consensus 23 ~~~~~~~~~~~n~rG~~lft~~W~p~~~~---~pr~lv~~~HG~g~~~s----~--~~~~~a~~l~~~g~~v~a~D~~Gh 93 (313)
T KOG1455|consen 23 GGVTYSESFFTNPRGAKLFTQSWLPLSGT---EPRGLVFLCHGYGEHSS----W--RYQSTAKRLAKSGFAVYAIDYEGH 93 (313)
T ss_pred CccceeeeeEEcCCCCEeEEEecccCCCC---CCceEEEEEcCCcccch----h--hHHHHHHHHHhCCCeEEEeeccCC
Confidence 34455666778889999999999996632 56789999999765432 1 345568899999999999999999
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-- 677 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-- 677 (776)
|.|..-. .... -...-++|+....+.++.+..-..-..+++||||||.+++.++.++|..+.++|+.+|+.-...
T Consensus 94 G~SdGl~--~yi~-~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~ 170 (313)
T KOG1455|consen 94 GRSDGLH--AYVP-SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDT 170 (313)
T ss_pred CcCCCCc--ccCC-cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCcc
Confidence 9885311 1101 1122377888888887776443456799999999999999999999999999999998743110
Q ss_pred -----------ccccccccccCCCCC------------------Cccch-------------h-cCChhhhhccCCCcEE
Q 004067 678 -----------YDTFYTEKYMGLPSE------------------DPVGY-------------E-YSSVMHHVHKMKGKLL 714 (776)
Q Consensus 678 -----------~~~~~~~~~~~~~~~------------------~~~~~-------------~-~~~~~~~~~~i~~P~l 714 (776)
.-..+...+.-.|.. ++--| + ..+....+.++..|+|
T Consensus 171 kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPfl 250 (313)
T KOG1455|consen 171 KPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFL 250 (313)
T ss_pred CCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEE
Confidence 000001111100000 00000 0 1122334667889999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC---CCCcHHHHHHHHHHHHHHh
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---RHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~~~fl~~~ 775 (776)
++||++|.++.+..++.+++...+ .+..+.+|||+-|... .+++.+.++..+.+||+++
T Consensus 251 ilHG~dD~VTDp~~Sk~Lye~A~S--~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 251 ILHGTDDKVTDPKVSKELYEKASS--SDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred EEecCCCcccCcHHHHHHHHhccC--CCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 999999999999999999998754 4558899999999974 5778899999999999875
No 31
>PHA02857 monoglyceride lipase; Provisional
Probab=99.86 E-value=1.6e-20 Score=191.60 Aligned_cols=227 Identities=18% Similarity=0.207 Sum_probs=157.9
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+..+||..+.+.+|.|.. .+.|+|+++||.+++.. .|..++..|++.||.|+++|+||+|.|......
T Consensus 5 ~~~~~g~~l~~~~~~~~~-----~~~~~v~llHG~~~~~~-------~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~ 72 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT-----YPKALVFISHGAGEHSG-------RYEELAENISSLGILVFSHDHIGHGRSNGEKMM 72 (276)
T ss_pred eecCCCCEEEEEeccCCC-----CCCEEEEEeCCCccccc-------hHHHHHHHHHhCCCEEEEccCCCCCCCCCccCC
Confidence 344699999999999853 35589999999765543 345568889999999999999999987532110
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc----------
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---------- 678 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------- 678 (776)
...+ ....+|+...++++.+.. ...+++++||||||.+++.++.++|+.++++|+.+|.......
T Consensus 73 --~~~~-~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~ 147 (276)
T PHA02857 73 --IDDF-GVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKL 147 (276)
T ss_pred --cCCH-HHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHH
Confidence 0111 112567777777776542 3468999999999999999999999999999999986542110
Q ss_pred cc-ccccccc-------------------CCCCCC----ccch-h-----cCChhhhhccCCCcEEEEecCCCCccChHH
Q 004067 679 DT-FYTEKYM-------------------GLPSED----PVGY-E-----YSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 679 ~~-~~~~~~~-------------------~~~~~~----~~~~-~-----~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
.. .+..... ..+... ...+ . .......+.++++|+|+++|++|.++|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~ 227 (276)
T PHA02857 148 MGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSG 227 (276)
T ss_pred HHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHH
Confidence 00 0000000 000000 0000 0 001123456788999999999999999999
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCCCCCCCC--CcHHHHHHHHHHHHHHh
Q 004067 729 TARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 775 (776)
Q Consensus 729 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~~~ 775 (776)
+.++.+.+. .+.++.++++++|.+..+ +.++++++.+.+||+++
T Consensus 228 ~~~l~~~~~---~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 228 AYYFMQHAN---CNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHHHHHHcc---CCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999988763 257899999999988654 33788999999999875
No 32
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.86 E-value=3.2e-20 Score=196.69 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=158.8
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.|+..+|..++++++.|+.. ++.|+||++||..+... + .+..+++.|+++||+|+++|+||+|.+
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~~----~~~P~Vli~gG~~~~~~--~----~~~~~~~~La~~Gy~vl~~D~pG~G~s 236 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKGD----GPFPTVLVCGGLDSLQT--D----YYRLFRDYLAPRGIAMLTIDMPSVGFS 236 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCCC----CCccEEEEeCCcccchh--h----hHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence 5789999988888899999999742 57788887666433211 1 233457789999999999999999987
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---- 678 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---- 678 (776)
...... . .......++++++.+.+.+|.++|+++||||||++++.++..+|++++++|+.+|+......
T Consensus 237 ~~~~~~---~----d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~ 309 (414)
T PRK05077 237 SKWKLT---Q----DSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKR 309 (414)
T ss_pred CCCCcc---c----cHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhh
Confidence 532100 0 01122357788998888889999999999999999999999999999999998887541100
Q ss_pred ----cccccc---cccCCCCCCccch----hcCC--hhhh-hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 679 ----DTFYTE---KYMGLPSEDPVGY----EYSS--VMHH-VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 679 ----~~~~~~---~~~~~~~~~~~~~----~~~~--~~~~-~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
...+.. ..++.+......+ ...+ .... ..++++|+|+++|++|.++|++.+..+.+.. .+.+
T Consensus 310 ~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~----~~~~ 385 (414)
T PRK05077 310 QQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSS----ADGK 385 (414)
T ss_pred hhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCe
Confidence 000000 0112221111111 1111 0111 2568899999999999999999888766543 5678
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++|++ |.+ +...++...+.+||.++|
T Consensus 386 l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 386 LLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 9999986 422 468899999999999876
No 33
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.85 E-value=3.4e-20 Score=194.98 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=158.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.++..+.+++|.++.+..+.|.+. .+.|+|||+||.++... . .|..++..|++.||.|+++|+||+|.|.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~~~~---~---~~~~~~~~l~~~g~~v~~~D~~G~G~S~ 130 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGDTCT---F---FFEGIARKIASSGYGVFAMDYPGFGLSE 130 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCCccc---h---HHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 344456667999999999998653 35689999999755422 1 1344577888899999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc--c--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--D-- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~--~-- 679 (776)
..... ...+ ...++|+.+.++.+......+..+++|+||||||++++.++.++|+.++++|+.+|....... .
T Consensus 131 ~~~~~--~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~ 207 (349)
T PLN02385 131 GLHGY--IPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPP 207 (349)
T ss_pred CCCCC--cCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCch
Confidence 32110 0000 112556777777766543334568999999999999999999999999999999886431100 0
Q ss_pred --------------c--cc-----cccccCCCCC------Cccch-------------hc-CChhhhhccCCCcEEEEec
Q 004067 680 --------------T--FY-----TEKYMGLPSE------DPVGY-------------EY-SSVMHHVHKMKGKLLLVHG 718 (776)
Q Consensus 680 --------------~--~~-----~~~~~~~~~~------~~~~~-------------~~-~~~~~~~~~i~~P~lii~G 718 (776)
. .+ ...+...... ....+ .. ......+.++++|+|++||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G 287 (349)
T PLN02385 208 LVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHG 287 (349)
T ss_pred HHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEe
Confidence 0 00 0000000000 00000 00 0112235678899999999
Q ss_pred CCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCc---HHHHHHHHHHHHHHhC
Q 004067 719 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD---RIYMEERIWEFIERTL 776 (776)
Q Consensus 719 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~~~l 776 (776)
++|.++++..+..+++.+.. .+.+++++++++|.+...+. .+.++..+.+||++++
T Consensus 288 ~~D~vv~~~~~~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 288 EADKVTDPSVSKFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCCCccChHHHHHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 99999999999998887632 35689999999998743222 3458899999999874
No 34
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=1.7e-19 Score=194.34 Aligned_cols=238 Identities=14% Similarity=0.151 Sum_probs=168.6
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..|+++|.++...+ .++.+.. .+..|.|||||++|+|++.. +||++++.+|+.++++.....
T Consensus 184 ~~i~i~d~dg~~~~-~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------------ 249 (429)
T PRK01742 184 YEVRVADYDGFNQF-IVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------------ 249 (429)
T ss_pred EEEEEECCCCCCce-EeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------------
Confidence 57999999998877 7776554 47899999999999999753 599999999988877653321
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...++|||||++|+|.....+ ..+||++|+++++.++++
T Consensus 250 ------~~~~~wSPDG~~La~~~~~~g---------------------------------~~~Iy~~d~~~~~~~~lt-- 288 (429)
T PRK01742 250 ------NGAPAFSPDGSRLAFASSKDG---------------------------------VLNIYVMGANGGTPSQLT-- 288 (429)
T ss_pred ------cCceeECCCCCEEEEEEecCC---------------------------------cEEEEEEECCCCCeEeec--
Confidence 225789999999999763221 156899999999888773
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
.+...+..+.|||||+.|++.+++. +...||.++..++..+.+. .. .+ ...|+ .+++.+
T Consensus 289 -------~~~~~~~~~~wSpDG~~i~f~s~~~-g~~~I~~~~~~~~~~~~l~-~~--~~---~~~~S-------pDG~~i 347 (429)
T PRK01742 289 -------SGAGNNTEPSWSPDGQSILFTSDRS-GSPQVYRMSASGGGASLVG-GR--GY---SAQIS-------ADGKTL 347 (429)
T ss_pred -------cCCCCcCCEEECCCCCEEEEEECCC-CCceEEEEECCCCCeEEec-CC--CC---CccCC-------CCCCEE
Confidence 3444567799999999998887655 4568999999888776652 11 11 12233 344556
Q ss_pred EEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecC
Q 004067 384 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 463 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~ 463 (776)
++.+. ..++++|+.+++.++++... .... +.|+|||+.|++.+...+. ..++.+++ +|. ..++|+.
T Consensus 348 a~~~~----~~i~~~Dl~~g~~~~lt~~~-~~~~-~~~sPdG~~i~~~s~~g~~--~~l~~~~~--~G~----~~~~l~~ 413 (429)
T PRK01742 348 VMING----DNVVKQDLTSGSTEVLSSTF-LDES-PSISPNGIMIIYSSTQGLG--KVLQLVSA--DGR----FKARLPG 413 (429)
T ss_pred EEEcC----CCEEEEECCCCCeEEecCCC-CCCC-ceECCCCCEEEEEEcCCCc--eEEEEEEC--CCC----ceEEccC
Confidence 66554 36888999988877776542 2233 3599999999999875442 33445565 564 5677765
Q ss_pred CCC-eEEEEEcCC
Q 004067 464 GKG-KHVAVLDHN 475 (776)
Q Consensus 464 ~~~-~~~~~~spd 475 (776)
..+ +..++|||-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 544 456788874
No 35
>PRK10749 lysophospholipase L2; Provisional
Probab=99.85 E-value=5e-20 Score=191.78 Aligned_cols=239 Identities=19% Similarity=0.167 Sum_probs=159.8
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+...+...+|..+++..+.|.. +.++||++||..+... .+..++..++++||.|+++|+||+|.
T Consensus 28 ~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~vll~HG~~~~~~-------~y~~~~~~l~~~g~~v~~~D~~G~G~ 94 (330)
T PRK10749 28 RQREEAEFTGVDDIPIRFVRFRAPH------HDRVVVICPGRIESYV-------KYAELAYDLFHLGYDVLIIDHRGQGR 94 (330)
T ss_pred hhccceEEEcCCCCEEEEEEccCCC------CCcEEEEECCccchHH-------HHHHHHHHHHHCCCeEEEEcCCCCCC
Confidence 4566677777899999999998753 2368999999755432 33445777889999999999999998
Q ss_pred CchhhhhhhhhccC--CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-c
Q 004067 602 RGLKFEASIKHNCG--RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y 678 (776)
Q Consensus 602 ~~~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-~ 678 (776)
|............. ....+|+.+.++.+.... +..++.++||||||.+++.++.++|+.++++|+.+|...... .
T Consensus 95 S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~ 172 (330)
T PRK10749 95 SGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPG--PYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPL 172 (330)
T ss_pred CCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCC
Confidence 86432110000000 012445555555544332 456899999999999999999999999999999988643110 0
Q ss_pred cc--------cc-------------cccccCCCC------CCc-------cchhcC---------------------Chh
Q 004067 679 DT--------FY-------------TEKYMGLPS------EDP-------VGYEYS---------------------SVM 703 (776)
Q Consensus 679 ~~--------~~-------------~~~~~~~~~------~~~-------~~~~~~---------------------~~~ 703 (776)
.. .. ...+...+. ... ..+... ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
T PRK10749 173 PSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVL 252 (330)
T ss_pred CcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHH
Confidence 00 00 000000000 000 000000 111
Q ss_pred hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC---CCeEEEEecCCCCCCCCCCc--HHHHHHHHHHHHHHh
Q 004067 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDERHMPRRHRD--RIYMEERIWEFIERT 775 (776)
Q Consensus 704 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~fl~~~ 775 (776)
..+.+++.|+|+++|++|.++++..+..+++.+.+++ .+.+++++|+++|.+..+.. ++.+++.+.+||+++
T Consensus 253 ~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 253 AGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 3356788999999999999999999999999887655 35689999999999855444 788999999999875
No 36
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.85 E-value=5e-19 Score=192.10 Aligned_cols=249 Identities=21% Similarity=0.259 Sum_probs=184.6
Q ss_pred cCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEE
Q 004067 63 SPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKII 142 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l 142 (776)
.+.+.+|+|++........+||++|.++++.++++... ..+..+.||| ||++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~------------------------~~~~~p~~Sp---dg~~l 204 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSR------------------------EPILSPAWSP---DGQKL 204 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCC------------------------CceecccCCC---CCCEE
Confidence 34578899998754334568999999999899888632 2366788999 99999
Q ss_pred EEeCC----CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCceeEEeeCCCCCce
Q 004067 143 MVPLP----DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 143 ~~~~~----~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+|... .+||++|+.+++.+ .++.... ....+.|||||+.|+|... .+||++++.++..++++.....
T Consensus 205 a~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~--- 279 (417)
T TIGR02800 205 AYVSFESGKPEIYVQDLATGQRE-KVASFPG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI--- 279 (417)
T ss_pred EEEEcCCCCcEEEEEECCCCCEE-EeecCCC-CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC---
Confidence 99832 47999999998777 5554443 3567999999999999864 3699999999988888654321
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
...+.|+|||++|+|.+...+ ..+||++|+++
T Consensus 280 ---------------~~~~~~s~dg~~l~~~s~~~g---------------------------------~~~iy~~d~~~ 311 (417)
T TIGR02800 280 ---------------DTEPSWSPDGKSIAFTSDRGG---------------------------------SPQIYMMDADG 311 (417)
T ss_pred ---------------CCCEEECCCCCEEEEEECCCC---------------------------------CceEEEEECCC
Confidence 225679999999999874321 14689999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
++...+.. .......+.|||||+.|++..... ....|+++|++++..+.+++... ...+.|
T Consensus 312 ~~~~~l~~---------~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~----~~~p~~----- 372 (417)
T TIGR02800 312 GEVRRLTF---------RGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGGERVLTDTGL----DESPSF----- 372 (417)
T ss_pred CCEEEeec---------CCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCCeEEccCCCC----CCCceE-----
Confidence 88877743 234556789999999888876544 45689999999988777764321 112223
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
+.+++.++|.+.+++...|++++.+|+..+.++...
T Consensus 373 --spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 408 (417)
T TIGR02800 373 --APNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGN 408 (417)
T ss_pred --CCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCC
Confidence 334556888888888889999999988888787653
No 37
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.84 E-value=3.7e-20 Score=166.03 Aligned_cols=202 Identities=19% Similarity=0.226 Sum_probs=154.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
-+||++||..|+.. ..+.++++|.++||.|.+|.+||||-....+.......| .+|+.++.++|.+..+
T Consensus 16 ~AVLllHGFTGt~~-------Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy 84 (243)
T COG1647 16 RAVLLLHGFTGTPR-------DVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY 84 (243)
T ss_pred EEEEEEeccCCCcH-------HHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC
Confidence 68999999877654 566789999999999999999999999989988888888 8899999999998764
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc------ccccc---cCCCCC-CccchhcC----
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF------YTEKY---MGLPSE-DPVGYEYS---- 700 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~---~~~~~~-~~~~~~~~---- 700 (776)
+.|+++|.||||.+|+.+|.++| .+++|..++.......... |.+.+ -+...+ ....+...
T Consensus 85 ---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~ 159 (243)
T COG1647 85 ---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTP 159 (243)
T ss_pred ---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcch
Confidence 58999999999999999999988 5666665554332111100 00111 010000 00111111
Q ss_pred ------------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHH
Q 004067 701 ------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768 (776)
Q Consensus 701 ------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 768 (776)
.....+..|..|+|+++|.+|+.+|.+.+.-+++.... .+.++.+|++.||.++....++.+.+.+
T Consensus 160 ~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~e~V 237 (243)
T COG1647 160 MTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVEEDV 237 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHHHHH
Confidence 22345677889999999999999999999999998853 4679999999999999999999999999
Q ss_pred HHHHHH
Q 004067 769 WEFIER 774 (776)
Q Consensus 769 ~~fl~~ 774 (776)
++||+.
T Consensus 238 ~~FL~~ 243 (243)
T COG1647 238 ITFLEK 243 (243)
T ss_pred HHHhhC
Confidence 999973
No 38
>PLN02442 S-formylglutathione hydrolase
Probab=99.83 E-value=3.5e-19 Score=179.98 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=156.2
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
..+.+++.++ -|..+.+.+|.|+.. ..+++|+|+++||.+++.. .|.. .......++..||+|++||..++|.
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~--~~~~~Pvv~~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~Vv~pd~~~~g~ 90 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS--DSGKVPVLYWLSGLTCTDE---NFIQ-KSGAQRAAAARGIALVAPDTSPRGL 90 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc--cCCCCCEEEEecCCCcChH---HHHH-hhhHHHHHhhcCeEEEecCCCCCCC
Confidence 4566677664 467899999999842 2368999999999776543 2321 1123456778899999999865541
Q ss_pred C------------chh-hhhhhhhccC-----CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCce
Q 004067 602 R------------GLK-FEASIKHNCG-----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVF 663 (776)
Q Consensus 602 ~------------~~~-~~~~~~~~~~-----~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~ 663 (776)
. +.. +.......+. .+..+++...++... ..++.++++|+||||||++|+.++.++|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~ 168 (283)
T PLN02442 91 NVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKY 168 (283)
T ss_pred CCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhE
Confidence 0 000 0001101110 111233333333322 2357889999999999999999999999999
Q ss_pred EEEEEcCCCCCccccc--ccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChH-HHHHHHHHHHHCC
Q 004067 664 QCAVSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAAR 740 (776)
Q Consensus 664 ~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~ 740 (776)
+++++.+|+.++.... ......+++.+......+...+++..+...+.|++++||++|..++.. ++..+++.+++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 169 KSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred EEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 9999999987643211 111122334333222333344444555566789999999999999874 5789999999999
Q ss_pred CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+++++++|+++|.+. ....+......|..++
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~ 280 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQA 280 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHH
Confidence 9999999999999763 2333344444555443
No 39
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.83 E-value=2.1e-19 Score=175.42 Aligned_cols=204 Identities=20% Similarity=0.191 Sum_probs=143.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC-Cchhh--hhhhhhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR-RGLKF--EASIKHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~-~~~~~--~~~~~~~ 613 (776)
+.+++..|++. ++.|+||++|+..|.. .....+++.|+++||.|++||+.+... ..... .......
T Consensus 1 ~~ay~~~P~~~----~~~~~Vvv~~d~~G~~-------~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~ 69 (218)
T PF01738_consen 1 IDAYVARPEGG----GPRPAVVVIHDIFGLN-------PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRE 69 (218)
T ss_dssp EEEEEEEETTS----SSEEEEEEE-BTTBS--------HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHH
T ss_pred CeEEEEeCCCC----CCCCEEEEEcCCCCCc-------hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHH
Confidence 46889999874 4789999999965432 223446889999999999999764433 11111 1111111
Q ss_pred ----cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCC
Q 004067 614 ----CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 689 (776)
Q Consensus 614 ----~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 689 (776)
.......|+.+++++|.++..++.+||+++|+|+||.+++.++.+. ..+++++...|...
T Consensus 70 ~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------- 133 (218)
T PF01738_consen 70 LFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------- 133 (218)
T ss_dssp CHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------
Confidence 1112357888999999998878899999999999999999999876 67899998776100
Q ss_pred CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC-------CcHH
Q 004067 690 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH-------RDRI 762 (776)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~-------~~~~ 762 (776)
...+.....++++|+|+++|++|+.++.+....+.+.+++.+.++++++||+++|.|... ...+
T Consensus 134 ---------~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 134 ---------PPPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp ---------GGGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred ---------CCcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 012234567888999999999999999999999999999999999999999999998533 3457
Q ss_pred HHHHHHHHHHHHhC
Q 004067 763 YMEERIWEFIERTL 776 (776)
Q Consensus 763 ~~~~~~~~fl~~~l 776 (776)
+.++++.+||+++|
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999987
No 40
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.82 E-value=7.9e-19 Score=184.33 Aligned_cols=234 Identities=17% Similarity=0.153 Sum_probs=160.2
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.....+..+++..+.+..|.|... .+.|+||++||.++... .|..++..|+++||.|+++|+||+|.+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~----~~~~~Vl~lHG~~~~~~-------~~~~~a~~L~~~Gy~V~~~D~rGhG~S~ 178 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAG----EMRGILIIIHGLNEHSG-------RYLHFAKQLTSCGFGVYAMDWIGHGGSD 178 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCC----CCceEEEEECCchHHHH-------HHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 455667778888999999999643 35689999999765533 2445688899999999999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC---ceEEEEEcCCCCCcccccc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTSWDGYDT 680 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~~~~v~~~~~~~~~~~~~ 680 (776)
.... +........+|+..+++++.... +..+++++||||||.+++.++. +|+ .++++|+.+|.........
T Consensus 179 ~~~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~ 252 (395)
T PLN02652 179 GLHG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHP 252 (395)
T ss_pred CCCC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchH
Confidence 4311 00000112567888888887543 2347999999999999987764 554 7899999988754321000
Q ss_pred ----------ccccccc--C-----CCC-CCc----cchh------------------cC--ChhhhhccCCCcEEEEec
Q 004067 681 ----------FYTEKYM--G-----LPS-EDP----VGYE------------------YS--SVMHHVHKMKGKLLLVHG 718 (776)
Q Consensus 681 ----------~~~~~~~--~-----~~~-~~~----~~~~------------------~~--~~~~~~~~i~~P~lii~G 718 (776)
.....+. . .+. .+. ..+. .. .....+.++++|+|++||
T Consensus 253 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G 332 (395)
T PLN02652 253 IVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHG 332 (395)
T ss_pred HHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 0000000 0 000 000 0000 00 012335678899999999
Q ss_pred CCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 719 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 719 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++|.++|+..+..+++++.. ...+++++++++|.......++++++.+.+||+.++
T Consensus 333 ~~D~vvp~~~a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 333 TADRVTDPLASQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred CCCCCCCHHHHHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999988632 346788999999998666678999999999998764
No 41
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.82 E-value=1.3e-18 Score=175.61 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=159.0
Q ss_pred ceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC--CCCC
Q 004067 524 PDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGTA 600 (776)
Q Consensus 524 ~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--rg~g 600 (776)
.+..++.+. -+.++.+.+|.|+... .++.|+|+++||.+++.. .|... ......+++.||.|++||. ||++
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~P~vvllHG~~~~~~---~~~~~-~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQAA--AGPVPVLWYLSGLTCTHE---NFMIK-AGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCcc--CCCCCEEEEccCCCCCcc---HHHhh-hHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 444555554 5678999999998631 246899999999776543 23111 1123444567999999997 6655
Q ss_pred CCchh--h---------hhhhhhccC-Ccc-HHHHHHHHHHHHH-cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 601 RRGLK--F---------EASIKHNCG-RID-AEDQLTGAEWLIK-QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 601 ~~~~~--~---------~~~~~~~~~-~~~-~~D~~~~i~~l~~-~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
.++.. | .......+. ... ...+...+..+++ +..++.++++|+||||||++++.++.++|+.|+++
T Consensus 87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~ 166 (275)
T TIGR02821 87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV 166 (275)
T ss_pred CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence 33311 1 000000000 011 2223334444443 34578889999999999999999999999999999
Q ss_pred EEcCCCCCccccc--ccccccccCCCCCCccchhcCChhhhhcc--CCCcEEEEecCCCCccCh-HHHHHHHHHHHHCCC
Q 004067 667 VSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHF-RHTARLINALVAARK 741 (776)
Q Consensus 667 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~~ 741 (776)
++.+|+.+..... ......+++.+. +.+...++...+.+ ...|+++.||+.|..++. .++..+.+++++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~ 243 (275)
T TIGR02821 167 SAFAPIVAPSRCPWGQKAFSAYLGADE---AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQ 243 (275)
T ss_pred EEECCccCcccCcchHHHHHHHhcccc---cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCC
Confidence 9999987653211 011122333222 22333444444333 457999999999999998 678899999999999
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
++++.++|+++|.+.. ........++|+.+++
T Consensus 244 ~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 244 ALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred CeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 9999999999998843 5566788888888765
No 42
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.81 E-value=1.2e-17 Score=174.93 Aligned_cols=283 Identities=16% Similarity=0.180 Sum_probs=190.6
Q ss_pred cCCCCEEEEEeCCCC----cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 63 SPDDNLITYLLSPDH----SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 63 SpDG~~ia~~~~~~~----~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
||||+++.+..+... .....+|++|+++++.++++.. ......+.||| |
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~------------------------~~~~~~~~~sP---~ 53 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP------------------------PPKLQDAKWSP---D 53 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E------------------------ETTBSEEEE-S---S
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC------------------------ccccccceeec---C
Confidence 899999999765322 2235899999999999888852 12467889999 9
Q ss_pred ceEEEEeCCCcEEEEeCCCCccceecCCCCC-----------------CCccCceeCCCCCEEEEEECC-----------
Q 004067 139 KKIIMVPLPDGIYFQDLSCSKPELKLSSSSC-----------------SPVIDPHLSSDGTMIAFVRDC----------- 190 (776)
Q Consensus 139 g~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~-----------------~~~~~~~~SpDg~~la~~~~~----------- 190 (776)
|+.|+|..+++||+.++.+++.+ +||.... ..-..+.|||||++|||.+-+
T Consensus 54 g~~~~~v~~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~ 132 (353)
T PF00930_consen 54 GKYIAFVRDNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD 132 (353)
T ss_dssp STEEEEEETTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE
T ss_pred CCeeEEEecCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec
Confidence 99999999999999999999888 7776431 123457899999999999721
Q ss_pred --------------------------cEEEEecCCCceeEEeeC---CCCCceecCCcccceecccCCcceEEECCCCCe
Q 004067 191 --------------------------ELHVLNLLINEQRQLTHG---ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKF 241 (776)
Q Consensus 191 --------------------------~l~~~~l~~g~~~~lt~~---~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~ 241 (776)
.|+++++++++...+... .....+ +..+.|++|++.
T Consensus 133 ~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~y---------------l~~v~W~~d~~~ 197 (353)
T PF00930_consen 133 YSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYY---------------LTRVGWSPDGKR 197 (353)
T ss_dssp ESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEE---------------EEEEEEEETTEE
T ss_pred cCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccC---------------cccceecCCCcE
Confidence 277777777766544322 011111 336789999998
Q ss_pred EEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe
Q 004067 242 IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
|++...++.+. ...+.++|..+++.+.+..... ...-.....+.|
T Consensus 198 l~~~~~nR~q~-------------------------------~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 198 LWVQWLNRDQN-------------------------------RLDLVLCDASTGETRVVLEETS----DGWVDVYDPPHF 242 (353)
T ss_dssp EEEEEEETTST-------------------------------EEEEEEEEECTTTCEEEEEEES----SSSSSSSSEEEE
T ss_pred EEEEEcccCCC-------------------------------EEEEEEEECCCCceeEEEEecC----Ccceeeeccccc
Confidence 88877665542 2668888998887766543211 112222234566
Q ss_pred c-cCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc--CCceEEEEE
Q 004067 322 M-HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK--TGFRHLYLH 398 (776)
Q Consensus 322 S-pDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~g~~~l~~~ 398 (776)
. +|+..+++.+.+. +..+||+++.+++..+.||... |.... .... ..+.+.+||++.. .+..+||++
T Consensus 243 ~~~~~~~~l~~s~~~-G~~hly~~~~~~~~~~~lT~G~---~~V~~-i~~~-----d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 243 LGPDGNEFLWISERD-GYRHLYLYDLDGGKPRQLTSGD---WEVTS-ILGW-----DEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp -TTTSSEEEEEEETT-SSEEEEEEETTSSEEEESS-SS---S-EEE-EEEE-----ECTSSEEEEEESSGGTTSBEEEEE
T ss_pred ccCCCCEEEEEEEcC-CCcEEEEEcccccceeccccCc---eeecc-cceE-----cCCCCEEEEEecCCCCCceEEEEE
Confidence 5 8888777776644 6889999999999988888654 32211 1111 2234568998876 467899999
Q ss_pred eCC-CceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 399 DIN-GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 399 ~~~-g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
+++ +++.+.||........ ..+||||++++.+-..
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~-~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYS-ASFSPDGKYYVDTYSG 348 (353)
T ss_dssp ETTETTEEEESSTTSSTTEE-EEE-TTSSEEEEEEES
T ss_pred EeCCCCCeEeccCCCCCceE-EEECCCCCEEEEEEcC
Confidence 999 9999999987543323 3499999987777544
No 43
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.80 E-value=2.7e-18 Score=173.20 Aligned_cols=235 Identities=21% Similarity=0.211 Sum_probs=160.0
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
..+..+...||..+.+..+.+.+. +..+||++||..+... .+..++..|..+||.|+++|.||+|.|.
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~-----~~g~Vvl~HG~~Eh~~-------ry~~la~~l~~~G~~V~~~D~RGhG~S~ 76 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP-----PKGVVVLVHGLGEHSG-------RYEELADDLAARGFDVYALDLRGHGRSP 76 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC-----CCcEEEEecCchHHHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 445567777999999999998763 3379999999766543 4556789999999999999999999996
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--cc--
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YD-- 679 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--~~-- 679 (776)
+ ....+-........|+...++.+... ....+++++||||||.+++.++.+++..++++|+.+|...... ..
T Consensus 77 r--~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~ 152 (298)
T COG2267 77 R--GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLI 152 (298)
T ss_pred C--CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHH
Confidence 3 00000000011133444444444432 1346899999999999999999999999999999999876441 00
Q ss_pred ---------ccccccc-cCC----C----C--CCc---cchh--------------------cC--ChhhhhccCCCcEE
Q 004067 680 ---------TFYTEKY-MGL----P----S--EDP---VGYE--------------------YS--SVMHHVHKMKGKLL 714 (776)
Q Consensus 680 ---------~~~~~~~-~~~----~----~--~~~---~~~~--------------------~~--~~~~~~~~i~~P~l 714 (776)
..+...+ ... . + .+. ..|. .. .......+++.|+|
T Consensus 153 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvL 232 (298)
T COG2267 153 LARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVL 232 (298)
T ss_pred HHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEE
Confidence 0000000 000 0 0 000 0000 00 11222456678999
Q ss_pred EEecCCCCccC-hHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH--HHHHHHHHHHHHHhC
Q 004067 715 LVHGMIDENVH-FRHTARLINALVAARKPYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 776 (776)
Q Consensus 715 ii~G~~D~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l 776 (776)
+++|++|.+++ .....++++++.. .+.++.+++++.|....+... +++++.+.+||.+++
T Consensus 233 ll~g~~D~vv~~~~~~~~~~~~~~~--~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 233 LLQGGDDRVVDNVEGLARFFERAGS--PDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred EEecCCCccccCcHHHHHHHHhcCC--CCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 99999999999 6777777777632 346999999999998777777 999999999998763
No 44
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=9.4e-18 Score=162.84 Aligned_cols=215 Identities=21% Similarity=0.165 Sum_probs=164.6
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.+.+.+++++ .++.+++..|... .+.|+||++|+-.+... .....++.|+..||.|++||+-+..+..
T Consensus 2 ~~~v~~~~~~-~~~~~~~a~P~~~----~~~P~VIv~hei~Gl~~-------~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~ 69 (236)
T COG0412 2 GTDVTIPAPD-GELPAYLARPAGA----GGFPGVIVLHEIFGLNP-------HIRDVARRLAKAGYVVLAPDLYGRQGDP 69 (236)
T ss_pred CcceEeeCCC-ceEeEEEecCCcC----CCCCEEEEEecccCCch-------HHHHHHHHHHhCCcEEEechhhccCCCC
Confidence 3567788766 7899999999885 34499999999544322 3455688999999999999976532211
Q ss_pred hhhh--h-hhhh-----ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 604 LKFE--A-SIKH-----NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 604 ~~~~--~-~~~~-----~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
.... . .... ........|+.+++++|.+++.++..+|+++|+||||.+++.++.+.| .++++++..|..-.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~ 148 (236)
T COG0412 70 TDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA 148 (236)
T ss_pred CcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC
Confidence 1111 0 1111 111345789999999999998789999999999999999999999877 68999997764210
Q ss_pred ccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 676 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.......++++|+|+.+|..|..+|......+.+++...+..+++.+|+++.|.|
T Consensus 149 -------------------------~~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 149 -------------------------DDTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred -------------------------CcccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 0011256788999999999999999999999999999988899999999999998
Q ss_pred CCCC----------cHHHHHHHHHHHHHHhC
Q 004067 756 RRHR----------DRIYMEERIWEFIERTL 776 (776)
Q Consensus 756 ~~~~----------~~~~~~~~~~~fl~~~l 776 (776)
.... ..+..++++.+||.++|
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~ 234 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLL 234 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 6432 25788999999999875
No 45
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=154.60 Aligned_cols=231 Identities=15% Similarity=0.147 Sum_probs=166.8
Q ss_pred hccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC
Q 004067 517 KRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 596 (776)
Q Consensus 517 ~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 596 (776)
.+..+ +.|.+++.++|.+++++|....++ ..|.++++|+..|+.. .......-.+...+..|+.++|
T Consensus 48 ~~~n~-pye~i~l~T~D~vtL~a~~~~~E~------S~pTlLyfh~NAGNmG------hr~~i~~~fy~~l~mnv~ivsY 114 (300)
T KOG4391|consen 48 KEFNM-PYERIELRTRDKVTLDAYLMLSES------SRPTLLYFHANAGNMG------HRLPIARVFYVNLKMNVLIVSY 114 (300)
T ss_pred cccCC-CceEEEEEcCcceeEeeeeecccC------CCceEEEEccCCCccc------chhhHHHHHHHHcCceEEEEEe
Confidence 33444 788999999999999999998332 4599999999766543 1222222345678999999999
Q ss_pred CCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 597 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 597 rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
||.|.|.....+.. -..|..++++|+.+++..|..+++++|.|.||.+|+.+|++..+++.|+++...+....
T Consensus 115 RGYG~S~GspsE~G-------L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp 187 (300)
T KOG4391|consen 115 RGYGKSEGSPSEEG-------LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP 187 (300)
T ss_pred eccccCCCCccccc-------eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccch
Confidence 99998864433221 15689999999999999999999999999999999999999999999999987766542
Q ss_pred ccc-cc---ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 677 GYD-TF---YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 677 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
.+. .. +..+++.. +-....| .....+..-+.|.|++.|.+|++|||-....+++.+.++. .++..||++.
T Consensus 188 ~~~i~~v~p~~~k~i~~-lc~kn~~---~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~--Krl~eFP~gt 261 (300)
T KOG4391|consen 188 HMAIPLVFPFPMKYIPL-LCYKNKW---LSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRT--KRLAEFPDGT 261 (300)
T ss_pred hhhhheeccchhhHHHH-HHHHhhh---cchhhhccccCceEEeecCccccCCcHHHHHHHHhCchhh--hhheeCCCCc
Confidence 211 11 11111100 0000111 1222344556799999999999999999999999886544 4789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHh
Q 004067 753 HMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 753 H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
|+-... -+-+++.+.+||.+.
T Consensus 262 HNDT~i--~dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 262 HNDTWI--CDGYFQAIEDFLAEV 282 (300)
T ss_pred cCceEE--eccHHHHHHHHHHHh
Confidence 975443 235788899998763
No 46
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.78 E-value=5.5e-18 Score=157.65 Aligned_cols=218 Identities=20% Similarity=0.199 Sum_probs=159.8
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+..++..|..+-+..+.|... ..++||+.||...... .....+...-...++.++++||+|.|.|
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~-----~~~~lly~hGNa~Dlg------q~~~~~~~l~~~ln~nv~~~DYSGyG~S 102 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA-----AHPTLLYSHGNAADLG------QMVELFKELSIFLNCNVVSYDYSGYGRS 102 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc-----cceEEEEcCCcccchH------HHHHHHHHHhhcccceEEEEeccccccc
Confidence 5667777888888888888888773 5689999999532211 1111112222235899999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
+....+. ...+|+.++.++|++... ..++|+|+|+|+|...++.+|++.| ..++|+.+|+.+..... +
T Consensus 103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~--~ 170 (258)
T KOG1552|consen 103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVA--F 170 (258)
T ss_pred CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhh--c
Confidence 6543321 348999999999999876 7789999999999999999999988 89999999998743221 0
Q ss_pred cccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH
Q 004067 683 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 762 (776)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~ 762 (776)
... ...-.+.....++.+..+++|+|++||++|++++..+..+++++++ .+++..+..|+||.- .+...
T Consensus 171 ~~~------~~~~~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k---~~~epl~v~g~gH~~--~~~~~ 239 (258)
T KOG1552|consen 171 PDT------KTTYCFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCK---EKVEPLWVKGAGHND--IELYP 239 (258)
T ss_pred cCc------ceEEeeccccccCcceeccCCEEEEecccCceecccccHHHHHhcc---ccCCCcEEecCCCcc--cccCH
Confidence 000 0001111222356678888999999999999999999999999884 346888889999974 34556
Q ss_pred HHHHHHHHHHHH
Q 004067 763 YMEERIWEFIER 774 (776)
Q Consensus 763 ~~~~~~~~fl~~ 774 (776)
++...+..|+..
T Consensus 240 ~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 240 EYIEHLRRFISS 251 (258)
T ss_pred HHHHHHHHHHHH
Confidence 777888887753
No 47
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.78 E-value=3e-17 Score=171.96 Aligned_cols=240 Identities=18% Similarity=0.214 Sum_probs=172.4
Q ss_pred EEEEeCC-CCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--
Q 004067 69 ITYLLSP-DHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-- 145 (776)
Q Consensus 69 ia~~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-- 145 (776)
|+|+... .+....++++.|-++-..+.++... ..+..+.|+| |++.++|.
T Consensus 160 i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~------------------------~~~~~p~ws~---~~~~~~y~~f 212 (425)
T COG0823 160 IAYVAESDGGPLPYELALGDYDGYNQQKLTDSG------------------------SLILTPAWSP---DGKKLAYVSF 212 (425)
T ss_pred EEEEeecccCCCCceEEEEccCCcceeEecccC------------------------cceeccccCc---CCCceEEEEE
Confidence 4444332 2334568999999976767676421 2456789999 99999887
Q ss_pred --CC-CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeCCCCCceecCC
Q 004067 146 --LP-DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHGANGNTVTHGL 218 (776)
Q Consensus 146 --~~-~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~ 218 (776)
.. ..+|++|+++++.. .+..... ....|+|||||++|+|+..+ +||++|+.+++.++|+.....
T Consensus 213 ~~~~~~~i~~~~l~~g~~~-~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi------- 283 (425)
T COG0823 213 ELGGCPRIYYLDLNTGKRP-VILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGI------- 283 (425)
T ss_pred ecCCCceEEEEeccCCccc-eeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcc-------
Confidence 22 46999999999888 5544443 37889999999999999864 699999999998888875432
Q ss_pred cccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE
Q 004067 219 AEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS 298 (776)
Q Consensus 219 ~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 298 (776)
...+.|||||++|+|.+...+. .+||+++++++...
T Consensus 284 -----------~~~Ps~spdG~~ivf~Sdr~G~---------------------------------p~I~~~~~~g~~~~ 319 (425)
T COG0823 284 -----------NTSPSWSPDGSKIVFTSDRGGR---------------------------------PQIYLYDLEGSQVT 319 (425)
T ss_pred -----------ccCccCCCCCCEEEEEeCCCCC---------------------------------cceEEECCCCCcee
Confidence 2256799999999999854332 57899999999998
Q ss_pred EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-eEEEEEeccCceeecccccccCCCCcc
Q 004067 299 WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-RKVILVEELDSWVNLHDCFTPLDKGVT 377 (776)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (776)
+++.. ......+.|||||++|++.... .+...|...|+.++. .+.++.... ...+.+.+
T Consensus 320 riT~~---------~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt~~~~----~e~ps~~~------ 379 (425)
T COG0823 320 RLTFS---------GGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILTSTYL----NESPSWAP------ 379 (425)
T ss_pred Eeecc---------CCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcccccc----CCCCCcCC------
Confidence 88653 2222379999999999988743 334779999998777 555544321 12222222
Q ss_pred ccCCeEEEEeccCCceEEEEEeCCCceeeccc
Q 004067 378 KYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 378 ~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt 409 (776)
++..++|.+...+...|+....++...+.+-
T Consensus 380 -ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 380 -NGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred -CCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 3445788887777888988888877655443
No 48
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.78 E-value=2e-18 Score=174.78 Aligned_cols=234 Identities=21% Similarity=0.281 Sum_probs=152.6
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+...++|.+.+|..++++++.|++.. ++.|+||.+||.++... .| . ....++.+||+|+.+|.||.|+.
T Consensus 55 ~vy~v~f~s~~g~~V~g~l~~P~~~~---~~~Pavv~~hGyg~~~~---~~----~-~~~~~a~~G~~vl~~d~rGqg~~ 123 (320)
T PF05448_consen 55 EVYDVSFESFDGSRVYGWLYRPKNAK---GKLPAVVQFHGYGGRSG---DP----F-DLLPWAAAGYAVLAMDVRGQGGR 123 (320)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEES-SS---SSEEEEEEE--TT--GG---GH----H-HHHHHHHTT-EEEEE--TTTSSS
T ss_pred EEEEEEEEccCCCEEEEEEEecCCCC---CCcCEEEEecCCCCCCC---Cc----c-cccccccCCeEEEEecCCCCCCC
Confidence 46678999889999999999998532 68999999999765422 11 1 12357899999999999999843
Q ss_pred chhhhhh------hhhccC----------CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 603 GLKFEAS------IKHNCG----------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 603 ~~~~~~~------~~~~~~----------~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
..+.... .+...+ ...+.|+.++++++.+++.+|.++|+++|.|+||.+++.+|+..++ ++++
T Consensus 124 ~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~r-v~~~ 202 (320)
T PF05448_consen 124 SPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPR-VKAA 202 (320)
T ss_dssp S-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST--SEE
T ss_pred CCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCcc-ccEE
Confidence 3221110 000001 1236899999999999999999999999999999999999998765 7888
Q ss_pred EEcCCCC-Ccccc------cccccc--cccC----CCCCCc---cchhcCChhhhhccCCCcEEEEecCCCCccChHHHH
Q 004067 667 VSGAPVT-SWDGY------DTFYTE--KYMG----LPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 667 v~~~~~~-~~~~~------~~~~~~--~~~~----~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 730 (776)
++..|.. ++... ...|.+ .|+. .+.... +.+.-.+....+.+|++|+++..|..|.+|||....
T Consensus 203 ~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~f 282 (320)
T PF05448_consen 203 AADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQF 282 (320)
T ss_dssp EEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHH
T ss_pred EecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHH
Confidence 8877754 32211 011111 1111 111111 223455777889999999999999999999999999
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..++++. .+.++++||..+|... .........+||.+|
T Consensus 283 A~yN~i~---~~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 283 AAYNAIP---GPKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp HHHCC-----SSEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred HHHhccC---CCeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 9999883 4689999999999652 233368899999876
No 49
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.78 E-value=6.9e-17 Score=175.34 Aligned_cols=247 Identities=16% Similarity=0.104 Sum_probs=174.7
Q ss_pred CCCCEEEEEECC------cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCC
Q 004067 179 SDGTMIAFVRDC------ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEI 252 (776)
Q Consensus 179 pDg~~la~~~~~------~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 252 (776)
..+.+++|++.. +||+++.+++..++++..... ...+.|||||++|+|.....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~------------------~~~p~~Spdg~~la~~~~~~~-- 212 (417)
T TIGR02800 153 AFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREP------------------ILSPAWSPDGQKLAYVSFESG-- 212 (417)
T ss_pred CcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCc------------------eecccCCCCCCEEEEEEcCCC--
Confidence 457788998754 599999988888888764421 335679999999999874321
Q ss_pred CeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 253 PRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
...|++||+++++...+.. .......++|||||+.|++..
T Consensus 213 -------------------------------~~~i~v~d~~~g~~~~~~~---------~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 213 -------------------------------KPEIYVQDLATGQREKVAS---------FPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred -------------------------------CcEEEEEECCCCCEEEeec---------CCCCccceEECCCCCEEEEEE
Confidence 1468999999998776632 223345689999999888775
Q ss_pred eecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 333 NRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 333 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
... +...||++|++++..+.++..... ...+.|+ .++..++|.+++.|..+||++++++++.++++...
T Consensus 253 ~~~-~~~~i~~~d~~~~~~~~l~~~~~~---~~~~~~s-------~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~ 321 (417)
T TIGR02800 253 SKD-GNPDIYVMDLDGKQLTRLTNGPGI---DTEPSWS-------PDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG 321 (417)
T ss_pred CCC-CCccEEEEECCCCCEEECCCCCCC---CCCEEEC-------CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC
Confidence 443 456799999999988887654321 1112232 24556888888888889999999998888888654
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
.....+ .|++||+.|++.....+ ..+|+.+++. +. ..+.++.......+.|+|||+.|++.+..... ..+
T Consensus 322 ~~~~~~-~~spdg~~i~~~~~~~~--~~~i~~~d~~--~~----~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~-~~l 391 (417)
T TIGR02800 322 GYNASP-SWSPDGDLIAFVHREGG--GFNIAVMDLD--GG----GERVLTDTGLDESPSFAPNGRMILYATTRGGR-GVL 391 (417)
T ss_pred CCccCe-EECCCCCEEEEEEccCC--ceEEEEEeCC--CC----CeEEccCCCCCCCceECCCCCEEEEEEeCCCc-EEE
Confidence 434444 49999999999887653 3678888883 32 45566654344556999999999999876544 567
Q ss_pred EEEEcCCCceeEeec
Q 004067 493 LLCSLQDGSLVLPLY 507 (776)
Q Consensus 493 ~~~~~~~~~~~~~l~ 507 (776)
++.+. +|...+.++
T Consensus 392 ~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 392 GLVST-DGRFRARLP 405 (417)
T ss_pred EEEEC-CCceeeECC
Confidence 77665 555455554
No 50
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.77 E-value=1.9e-17 Score=173.55 Aligned_cols=205 Identities=15% Similarity=0.214 Sum_probs=156.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
...|+|||||+.|+|.....+. ...+|++++++++..++.+... ....+.|||
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g------------------------~~~~P~fsp-- 247 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG------------------------NNGAPAFSP-- 247 (425)
T ss_pred eeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC------------------------ccCCccCCC--
Confidence 3678999999999999764432 2689999999999877775322 344678999
Q ss_pred CCceEEEEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC----cEEEEecCCCceeEEeeC
Q 004067 137 SKKKIIMVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC----ELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 137 ~dg~~l~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~----~l~~~~l~~g~~~~lt~~ 208 (776)
||++|+|.. ..+||++|+.++..+ +|+...+. ...|.|||||++|+|+++. +||++++++++.+++|..
T Consensus 248 -DG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi-~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 248 -DGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGI-NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred -CCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCcc-ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 999999983 346999999999988 88887764 6699999999999999985 799999999999999987
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
... ...+.|||||++|+|.+...++ ..+.
T Consensus 325 ~~~------------------~~~p~~SpdG~~i~~~~~~~g~---------------------------------~~i~ 353 (425)
T COG0823 325 GGG------------------NSNPVWSPDGDKIVFESSSGGQ---------------------------------WDID 353 (425)
T ss_pred CCC------------------CcCccCCCCCCEEEEEeccCCc---------------------------------eeeE
Confidence 654 1245699999999998743221 4577
Q ss_pred EEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 289 VVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 289 ~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
+.|+.++. .+.++ .......+.|+|||+.+.+.+... ....+...+..+...+.
T Consensus 354 ~~~~~~~~~~~~lt----------~~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~~~~~ 408 (425)
T COG0823 354 KNDLASGGKIRILT----------STYLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGRVSRP 408 (425)
T ss_pred EeccCCCCcEEEcc----------ccccCCCCCcCCCCceEEEeccCC-CCceEEEeeccceeEEE
Confidence 78887766 33332 233455689999999888877655 55667777765544433
No 51
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.77 E-value=1.6e-15 Score=149.37 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=149.1
Q ss_pred eeCCCCCEEEEEECCcEEEEecCCCceeEEeeC-CCC-C---ceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 176 HLSSDGTMIAFVRDCELHVLNLLINEQRQLTHG-ANG-N---TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 176 ~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
.-+-||++|+|...++||++|+++-..+.|.-+ +-. . ........+. +.++- -+|..|++++.
T Consensus 273 ~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyl--------edfa~-~~Gd~ia~VSR--- 340 (668)
T COG4946 273 NANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYL--------EDFAV-VNGDYIALVSR--- 340 (668)
T ss_pred ccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhh--------hhhcc-CCCcEEEEEec---
Confidence 446799999999999999999999888877554 211 0 0011011110 11222 25888888774
Q ss_pred CCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEE
Q 004067 251 EIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQ 330 (776)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~ 330 (776)
.+.++.+...+-..++ ++.+.+.-..++-|++.++.
T Consensus 341 ----------------------------------GkaFi~~~~~~~~iqv----------~~~~~VrY~r~~~~~e~~vi 376 (668)
T COG4946 341 ----------------------------------GKAFIMRPWDGYSIQV----------GKKGGVRYRRIQVDPEGDVI 376 (668)
T ss_pred ----------------------------------CcEEEECCCCCeeEEc----------CCCCceEEEEEccCCcceEE
Confidence 3457777666655554 23334666777888875555
Q ss_pred EEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecccc
Q 004067 331 VLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 331 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
..+.+ ..|.++|.++|+.+++..+-+...... . +. +++.+.+++... +||++|+++++.+.+..
T Consensus 377 gt~dg---D~l~iyd~~~~e~kr~e~~lg~I~av~---v-------s~-dGK~~vvaNdr~--el~vididngnv~~idk 440 (668)
T COG4946 377 GTNDG---DKLGIYDKDGGEVKRIEKDLGNIEAVK---V-------SP-DGKKVVVANDRF--ELWVIDIDNGNVRLIDK 440 (668)
T ss_pred eccCC---ceEEEEecCCceEEEeeCCccceEEEE---E-------cC-CCcEEEEEcCce--EEEEEEecCCCeeEecc
Confidence 54332 258899999999998876654433221 1 12 334555565555 89999999999999987
Q ss_pred CCeE-EEEEEeecCCCcEEEEEEccCC-CceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCC
Q 004067 411 GDWM-VEQIVGVNEASGQVYFTGTLDG-PLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSL 486 (776)
Q Consensus 411 ~~~~-~~~~~~~s~dg~~i~~~~~~~~-~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~ 486 (776)
.... +..+. |+|++++|+|.--..- ...++||.+. +| .+-.+|...+ ..+++|.|||++|.|.+...
T Consensus 441 S~~~lItdf~-~~~nsr~iAYafP~gy~tq~Iklydm~---~~-----Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 441 SEYGLITDFD-WHPNSRWIAYAFPEGYYTQSIKLYDMD---GG-----KIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cccceeEEEE-EcCCceeEEEecCcceeeeeEEEEecC---CC-----eEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 7544 44554 9999999988854211 1224555554 22 5777777654 45779999999999987654
No 52
>PRK10162 acetyl esterase; Provisional
Probab=99.76 E-value=7.8e-17 Score=165.90 Aligned_cols=228 Identities=17% Similarity=0.164 Sum_probs=156.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~ 602 (776)
.+.+.++..+| .+.+.+|.|.. ...|+||++|||+....-.+ .+...+..|+. .|+.|+++|||...+.
T Consensus 57 ~~~~~i~~~~g-~i~~~~y~P~~-----~~~p~vv~~HGGg~~~g~~~----~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTPYG-QVETRLYYPQP-----DSQATLFYLHGGGFILGNLD----THDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecCCC-ceEEEEECCCC-----CCCCEEEEEeCCcccCCCch----hhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 66778887777 59999999964 24589999999875432111 22334666765 6999999999965432
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC------CCceEEEEEcCCCC
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVT 673 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~------~~~~~~~v~~~~~~ 673 (776)
. + ....+|+.++++|+.++ ..+|.++|+|+|+|+||.+++.++.+. +..++++++.+|+.
T Consensus 127 ~--~---------p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 R--F---------PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred C--C---------CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 1 1 12378999999999764 457889999999999999999988642 35678889988877
Q ss_pred Ccccccc--c---------------ccccccCCCCCCccchhcCChh-hhhccCCCcEEEEecCCCCccChHHHHHHHHH
Q 004067 674 SWDGYDT--F---------------YTEKYMGLPSEDPVGYEYSSVM-HHVHKMKGKLLLVHGMIDENVHFRHTARLINA 735 (776)
Q Consensus 674 ~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 735 (776)
+...... . +...|++.+...... ..++. ..+..--.|++|++|+.|... .++..+.++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p--~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESP--YYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCc--ccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 6421100 0 001111111100000 01111 112122369999999999886 478999999
Q ss_pred HHHCCCCeEEEEecCCCCCCCCC----CcHHHHHHHHHHHHHHhC
Q 004067 736 LVAARKPYEILIFPDERHMPRRH----RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 736 l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l 776 (776)
|+++|++++++++++..|.|... ....+.++.+.+||+++|
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~ 316 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQL 316 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987432 335678888999998865
No 53
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.2e-16 Score=150.21 Aligned_cols=303 Identities=13% Similarity=0.077 Sum_probs=195.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+-..+|||||++|+ .|.+...+.+||+++..+-- ...|+ .=+...+|||
T Consensus 118 Vl~~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp~~t~KgH~------------------------~WVlcvawsP- 167 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLV-----TGSGDTTVRLWDLDTETPLFTCKGHK------------------------NWVLCVAWSP- 167 (480)
T ss_pred EEEEEecCCCceEE-----ecCCCceEEeeccCCCCcceeecCCc------------------------cEEEEEEECC-
Confidence 56889999999999 55566899999999987632 22221 2377899999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccc-eecCCCCCCCccCcee-----CCCCCEEEEEE-CCcEEEEecCCCceeEEee
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHL-----SSDGTMIAFVR-DCELHVLNLLINEQRQLTH 207 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~-----SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~ 207 (776)
||++|+.. .++.|-+||..+|+.. ..|..+... +..++| .|..++||..+ ++++.+||+..|.......
T Consensus 168 --Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~-It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 168 --DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKW-ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred --CcchhhccccCCeEEEecCCCCCcccccccCcccc-eeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence 99999987 7899999999888766 355544433 666665 45788888776 5789999999887766554
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.... + +.-+.|--+| ++|....+ ..|
T Consensus 245 gHT~-------~----------VTCvrwGG~g--liySgS~D-----------------------------------rtI 270 (480)
T KOG0271|consen 245 GHTA-------S----------VTCVRWGGEG--LIYSGSQD-----------------------------------RTI 270 (480)
T ss_pred cCcc-------c----------eEEEEEcCCc--eEEecCCC-----------------------------------ceE
Confidence 3321 0 3456786444 55544221 346
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec-----------cCC-------------------------eEEEEE
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-----------HGN-------------------------ILTAQV 331 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-----------pDg-------------------------~~l~~~ 331 (776)
.+|+...|+.... +.++...+..++.| |-| +.++..
T Consensus 271 kvw~a~dG~~~r~--------lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 271 KVWRALDGKLCRE--------LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred EEEEccchhHHHh--------hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 7777766654322 13444444444444 222 235555
Q ss_pred EeecCceEEEEEEECCCCc--eEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eecc
Q 004067 332 LNRSQTKLKVLKFDIKTGQ--RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPI 408 (776)
Q Consensus 332 ~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~l 408 (776)
+ ++.++++|++.... .++++.+.... ..-.|+| ++.++.++..+. .+.+|+-.+|+ ...+
T Consensus 343 s----Dd~tlflW~p~~~kkpi~rmtgHq~lV---n~V~fSP--------d~r~IASaSFDk--SVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 343 S----DDFTLFLWNPFKSKKPITRMTGHQALV---NHVSFSP--------DGRYIASASFDK--SVKLWDGRTGKFLASF 405 (480)
T ss_pred c----CCceEEEecccccccchhhhhchhhhe---eeEEECC--------CccEEEEeeccc--ceeeeeCCCcchhhhh
Confidence 4 67789999985432 34555554331 1223555 334555555565 88899976665 3334
Q ss_pred ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-CCeEEEEEcCCcCEEEEE
Q 004067 409 TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDF 482 (776)
Q Consensus 409 t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~ 482 (776)
-.+-..|... .||.|.+ ++++.+.+.+ +++|++...+ ....|+.+ +.++.+.|||||++++-.
T Consensus 406 RGHv~~VYqv-awsaDsR-LlVS~SkDsT--LKvw~V~tkK-------l~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 406 RGHVAAVYQV-AWSADSR-LLVSGSKDST--LKVWDVRTKK-------LKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred hhccceeEEE-EeccCcc-EEEEcCCCce--EEEEEeeeee-------ecccCCCCCceEEEEEecCCCceeecC
Confidence 3344445555 4999987 6777777665 8999998632 44556644 357899999999987643
No 54
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.74 E-value=3.5e-17 Score=158.72 Aligned_cols=191 Identities=13% Similarity=0.082 Sum_probs=124.6
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh--hhhhhhccCC
Q 004067 539 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF--EASIKHNCGR 616 (776)
Q Consensus 539 ~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~--~~~~~~~~~~ 616 (776)
+++|.|++.. +++|+||++||+++.... +...+ .+...+.+.||+|++||++|++.....+ ........+.
T Consensus 1 ~~ly~P~~~~---~~~P~vv~lHG~~~~~~~---~~~~~-~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~ 73 (212)
T TIGR01840 1 MYVYVPAGLT---GPRALVLALHGCGQTASA---YVIDW-GWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGT 73 (212)
T ss_pred CEEEcCCCCC---CCCCEEEEeCCCCCCHHH---Hhhhc-ChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCC
Confidence 4688897742 578999999998765431 11011 1355666789999999999987543322 1111111223
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--ccccccccccCCCCCCc
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDTFYTEKYMGLPSEDP 694 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 694 (776)
.+..|+...++++.++..+|.++|+|+||||||++++.+++++|++|.++++.++...... ....... +..+ ...
T Consensus 74 ~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~-~~~ 150 (212)
T TIGR01840 74 GEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQ--MCTA-ATA 150 (212)
T ss_pred ccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhh--cCCC-CCH
Confidence 4578889999999988778999999999999999999999999999999988887642110 0000000 0000 000
Q ss_pred cchhcC--ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 695 VGYEYS--SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 695 ~~~~~~--~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
..+... ...........|++++||.+|.+||+..+..+++++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 151 ASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 001000 000111223356789999999999999999999999775
No 55
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.74 E-value=1.9e-16 Score=163.48 Aligned_cols=235 Identities=14% Similarity=0.116 Sum_probs=145.9
Q ss_pred hhhccCCCCceEEEEEcCCCc--EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEE
Q 004067 515 RIKRLQLEPPDIVQIQANDGT--VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVW 592 (776)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 592 (776)
.++.+.+ ....+.+...+|. ++++....+ ...|.|||+||.++... .|..++..|.+.||.|+
T Consensus 13 ~~~~~~~-~~~~~~~~~~~~~~~~i~y~~~G~-------~~~~~lvliHG~~~~~~-------~w~~~~~~L~~~gy~vi 77 (302)
T PRK00870 13 NLPDYPF-APHYVDVDDGDGGPLRMHYVDEGP-------ADGPPVLLLHGEPSWSY-------LYRKMIPILAAAGHRVI 77 (302)
T ss_pred CCcCCCC-CceeEeecCCCCceEEEEEEecCC-------CCCCEEEEECCCCCchh-------hHHHHHHHHHhCCCEEE
Confidence 3344444 4445555543443 455544321 12368999999765433 35556778888899999
Q ss_pred EECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 593 KLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 593 ~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
++|+||+|.|...... ..+.++++.+.+..+.++. +.+++.++||||||.+++.++.++|+.++++++.++.
T Consensus 78 ~~Dl~G~G~S~~~~~~------~~~~~~~~a~~l~~~l~~l--~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 78 APDLIGFGRSDKPTRR------EDYTYARHVEWMRSWFEQL--DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred EECCCCCCCCCCCCCc------ccCCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 9999999988542110 1123555555555555443 4468999999999999999999999999999988753
Q ss_pred CCccc------c---cc------------ccc------------ccccCCC-CC---C-ccchhc------CC-------
Q 004067 673 TSWDG------Y---DT------------FYT------------EKYMGLP-SE---D-PVGYEY------SS------- 701 (776)
Q Consensus 673 ~~~~~------~---~~------------~~~------------~~~~~~~-~~---~-~~~~~~------~~------- 701 (776)
..... + .. .+. ..+.... .. . ...+.. ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 21000 0 00 000 0000000 00 0 000000 00
Q ss_pred -hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 702 -VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 702 -~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
....+.++++|+|+++|+.|..++... ..+.+.+.. .....+.+++++||.+ ..+.++.+.+.+.+||+++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPG-AAGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhccc-ccccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 012356788999999999999999755 666555532 1123478999999987 6788899999999999875
No 56
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.73 E-value=5.4e-16 Score=175.18 Aligned_cols=191 Identities=18% Similarity=0.265 Sum_probs=146.1
Q ss_pred hhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC--CCC------------CCcEEEEee
Q 004067 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG--LAK------------VGHIGLYGW 645 (776)
Q Consensus 580 ~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~id------------~~~i~l~G~ 645 (776)
..++|+.+||+|+.+|.||+++|+..+. .++..+.+|..++|+|+..+. +.| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 4578999999999999999999876542 234557899999999998542 123 579999999
Q ss_pred chHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-c--------cc--------c----ccc------cCC---------
Q 004067 646 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T--------FY--------T----EKY------MGL--------- 689 (776)
Q Consensus 646 S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-~--------~~--------~----~~~------~~~--------- 689 (776)
||||++++.+|+..|..++|+|+.+++.+|..+. . .| . .+. ...
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 9999999999998888999999999998764221 0 00 0 000 000
Q ss_pred ---------CCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCc
Q 004067 690 ---------PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD 760 (776)
Q Consensus 690 ---------~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 760 (776)
.....+.|...++..++.++++|+|++||..|..+++.++.++++++++.+.+.++.+.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 0011233455677788899999999999999999999999999999999888888877765 786544445
Q ss_pred HHHHHHHHHHHHHHhC
Q 004067 761 RIYMEERIWEFIERTL 776 (776)
Q Consensus 761 ~~~~~~~~~~fl~~~l 776 (776)
..++.+.+.+||+++|
T Consensus 505 ~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 505 SIDFRDTMNAWFTHKL 520 (767)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6788899999999886
No 57
>PRK11460 putative hydrolase; Provisional
Probab=99.73 E-value=2.6e-16 Score=153.95 Aligned_cols=185 Identities=13% Similarity=0.098 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC----chhhhhhhhhccCC-------ccHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR----GLKFEASIKHNCGR-------IDAE 620 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~----~~~~~~~~~~~~~~-------~~~~ 620 (776)
++.|+||++||.+++.. .+..++..|...++.+..+.++|...+ +..|.... ..... ....
T Consensus 14 ~~~~~vIlLHG~G~~~~-------~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~ 85 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV-------AMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMP 85 (232)
T ss_pred CCCcEEEEEeCCCCChH-------HHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHH
Confidence 45689999999776644 234457778776655555555543211 22221100 00000 1123
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcC
Q 004067 621 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS 700 (776)
Q Consensus 621 D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (776)
.+.+.++++.++..++.++|+++|+|+||.+++.++.++|+.+.++++.++... ..+.
T Consensus 86 ~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-------------~~~~--------- 143 (232)
T PRK11460 86 TFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-------------SLPE--------- 143 (232)
T ss_pred HHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-------------cccc---------
Confidence 344566666666667888999999999999999999989988888887765321 0000
Q ss_pred ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 701 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 701 ~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
....+.|+|++||++|.++|++.+.++.+.|++.+.++++++|++++|.+. .+..+.+.+||.+.|
T Consensus 144 -----~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~l 209 (232)
T PRK11460 144 -----TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYTV 209 (232)
T ss_pred -----cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHHc
Confidence 112368999999999999999999999999999999999999999999883 344567777776653
No 58
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.73 E-value=3.1e-15 Score=147.38 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=184.9
Q ss_pred CCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe
Q 004067 66 DNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP 145 (776)
Q Consensus 66 G~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~ 145 (776)
|.+|+|++..+| ..|||..|++|...++-|++.+ ...-.-+. ||++|+|.
T Consensus 235 ~~RvYFlsD~eG--~GnlYSvdldGkDlrrHTnFtd-------------------------YY~R~~ns---DGkrIvFq 284 (668)
T COG4946 235 GERVYFLSDHEG--VGNLYSVDLDGKDLRRHTNFTD-------------------------YYPRNANS---DGKRIVFQ 284 (668)
T ss_pred cceEEEEecccC--ccceEEeccCCchhhhcCCchh-------------------------ccccccCC---CCcEEEEe
Confidence 568999999876 4899999999999888886433 11112233 99999999
Q ss_pred CCCcEEEEeCCCCccceecCCC-CCC------CccC----c-eeCC-CCCEEEEEECCcEEEEecCCCceeEEeeCCCCC
Q 004067 146 LPDGIYFQDLSCSKPELKLSSS-SCS------PVID----P-HLSS-DGTMIAFVRDCELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~-~~~------~~~~----~-~~Sp-Dg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
..++||++|.++...+ .|.-+ +-. .... + .||+ +|.+++++++++.|+++.-.|-..|+-..+.
T Consensus 285 ~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~-- 361 (668)
T COG4946 285 NAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGG-- 361 (668)
T ss_pred cCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCc--
Confidence 9999999999998877 44332 100 0111 1 2555 8999999999999999999998888755432
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
++-..++-|++.++....++ -.|.++|.
T Consensus 362 -----------------VrY~r~~~~~e~~vigt~dg-----------------------------------D~l~iyd~ 389 (668)
T COG4946 362 -----------------VRYRRIQVDPEGDVIGTNDG-----------------------------------DKLGIYDK 389 (668)
T ss_pred -----------------eEEEEEccCCcceEEeccCC-----------------------------------ceEEEEec
Confidence 11223556666565544322 24789999
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
++++.+++ .+.-+.+..+..|||||.++... +..+|+++|+++|..+.+...... .+ .+-.|+|.
T Consensus 390 ~~~e~kr~---------e~~lg~I~av~vs~dGK~~vvaN----dr~el~vididngnv~~idkS~~~-lI-tdf~~~~n 454 (668)
T COG4946 390 DGGEVKRI---------EKDLGNIEAVKVSPDGKKVVVAN----DRFELWVIDIDNGNVRLIDKSEYG-LI-TDFDWHPN 454 (668)
T ss_pred CCceEEEe---------eCCccceEEEEEcCCCcEEEEEc----CceEEEEEEecCCCeeEecccccc-ee-EEEEEcCC
Confidence 99999988 45567899999999999877765 567899999999999988654432 11 11123332
Q ss_pred CCCccccCCeEEEEeccCC--ceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 373 DKGVTKYSGGFIWASEKTG--FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g--~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
. +++.-+--+| .++|.++|.+|++.-.+|.....-.++ +|+|||+++||.+..
T Consensus 455 s--------r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP-aFD~d~ryLYfLs~R 509 (668)
T COG4946 455 S--------RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP-AFDPDGRYLYFLSAR 509 (668)
T ss_pred c--------eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc-ccCCCCcEEEEEecc
Confidence 2 2333332344 368999999999998888875443444 499999999999875
No 59
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.73 E-value=1.6e-16 Score=163.57 Aligned_cols=219 Identities=11% Similarity=-0.009 Sum_probs=141.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|..+++....+ +.|+||++||.+++.. .|...+..|++. |+|+++|+||+|.|...-......
T Consensus 16 ~~~~i~y~~~G~--------~~~~vlllHG~~~~~~-------~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~ 79 (294)
T PLN02824 16 KGYNIRYQRAGT--------SGPALVLVHGFGGNAD-------HWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPP 79 (294)
T ss_pred cCeEEEEEEcCC--------CCCeEEEECCCCCChh-------HHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccc
Confidence 566676655432 1268999999877654 344556777765 799999999999886431110000
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc---cc-----------c
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW---DG-----------Y 678 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~---~~-----------~ 678 (776)
...+.++++...+..+++... .+++.++||||||++++.++.++|++++++|+.++.... .. +
T Consensus 80 -~~~~~~~~~a~~l~~~l~~l~--~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
T PLN02824 80 -NSFYTFETWGEQLNDFCSDVV--GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAF 156 (294)
T ss_pred -cccCCHHHHHHHHHHHHHHhc--CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHH
Confidence 012346666666666655432 368999999999999999999999999999998764310 00 0
Q ss_pred ccccc------------------ccc----cCCC-CCCc----------------cchh---cC----ChhhhhccCCCc
Q 004067 679 DTFYT------------------EKY----MGLP-SEDP----------------VGYE---YS----SVMHHVHKMKGK 712 (776)
Q Consensus 679 ~~~~~------------------~~~----~~~~-~~~~----------------~~~~---~~----~~~~~~~~i~~P 712 (776)
..... ... .... .... ..+. .. .....+.++++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 236 (294)
T PLN02824 157 QNLLRETAVGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCP 236 (294)
T ss_pred HHHHhchhHHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCC
Confidence 00000 000 0000 0000 0000 00 112346778999
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+|+++|++|..++...+..+.+. ....++++++++||.. ..+..+++.+.+.+||+++
T Consensus 237 ~lvi~G~~D~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 237 VLIAWGEKDPWEPVELGRAYANF----DAVEDFIVLPGVGHCP-QDEAPELVNPLIESFVARH 294 (294)
T ss_pred eEEEEecCCCCCChHHHHHHHhc----CCccceEEeCCCCCCh-hhhCHHHHHHHHHHHHhcC
Confidence 99999999999998877664332 3446899999999976 6688999999999999864
No 60
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.73 E-value=1.7e-16 Score=162.69 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+.... .|...+ ..+..+.+.||.|+++|+||+|.|....... .......+|+.++++.+
T Consensus 31 ~~ivllHG~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~---~~~~~~~~~l~~~l~~l----- 98 (282)
T TIGR03343 31 EAVIMLHGGGPGAG---GWSNYY-RNIGPFVDAGYRVILKDSPGFNKSDAVVMDE---QRGLVNARAVKGLMDAL----- 98 (282)
T ss_pred CeEEEECCCCCchh---hHHHHH-HHHHHHHhCCCEEEEECCCCCCCCCCCcCcc---cccchhHHHHHHHHHHc-----
Confidence 67999999765432 232211 1234566789999999999999886432110 00011234444444443
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------ccccc-----------c---ccccCCC-
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------YDTFY-----------T---EKYMGLP- 690 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~~~~~-----------~---~~~~~~~- 690 (776)
+.+++.++||||||++++.++.++|++++++|+.+|...... ....+ . ..+...+
T Consensus 99 -~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (282)
T TIGR03343 99 -DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQS 177 (282)
T ss_pred -CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcc
Confidence 556999999999999999999999999999998876421000 00000 0 0000000
Q ss_pred CC--------------Ccc---c---------hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 691 SE--------------DPV---G---------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 691 ~~--------------~~~---~---------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
.. ... . +...+....+.++++|+|+++|++|..+++..+.++.+.+ .+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~----~~~~ 253 (282)
T TIGR03343 178 LITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNM----PDAQ 253 (282)
T ss_pred cCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhC----CCCE
Confidence 00 000 0 0011122346788899999999999999998888877765 5789
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++++++||.. ..+.+..+.+.+.+||.
T Consensus 254 ~~~i~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 254 LHVFSRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred EEEeCCCCcCC-cccCHHHHHHHHHHHhh
Confidence 99999999987 67888999999999986
No 61
>PLN02511 hydrolase
Probab=99.73 E-value=1.5e-16 Score=168.31 Aligned_cols=236 Identities=19% Similarity=0.140 Sum_probs=149.3
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..++..+.++||..+....+.+... ..+...|+||++||..++.. ..| +..++..+.+.||.|+++|+||+|++
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~-~~~~~~p~vvllHG~~g~s~--~~y---~~~~~~~~~~~g~~vv~~d~rG~G~s 143 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDR-ALPADAPVLILLPGLTGGSD--DSY---VRHMLLRARSKGWRVVVFNSRGCADS 143 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccc-cCCCCCCEEEEECCCCCCCC--CHH---HHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 4566678888998777654443211 11134589999999766532 112 12235566789999999999999988
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc--eEEEEEcCCCCCcc----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV--FQCAVSGAPVTSWD---- 676 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~--~~~~v~~~~~~~~~---- 676 (776)
..... ..+.....+|+.++++++..+. ...++.++||||||.+++.++.++++. +.+++++++..+..
T Consensus 144 ~~~~~----~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~ 217 (388)
T PLN02511 144 PVTTP----QFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADE 217 (388)
T ss_pred CCCCc----CEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHH
Confidence 53211 1111234789999999998763 346899999999999999999998876 66666655443320
Q ss_pred --------ccccccc----------cccc-CCC---------------------------CCCc-cchhcCChhhhhccC
Q 004067 677 --------GYDTFYT----------EKYM-GLP---------------------------SEDP-VGYEYSSVMHHVHKM 709 (776)
Q Consensus 677 --------~~~~~~~----------~~~~-~~~---------------------------~~~~-~~~~~~~~~~~~~~i 709 (776)
.+...+. ...+ ..+ .... +.|...+....+.++
T Consensus 218 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I 297 (388)
T PLN02511 218 DFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHV 297 (388)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccC
Confidence 0000000 0000 000 0000 122344556678899
Q ss_pred CCcEEEEecCCCCccChHHHH-HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHH------HHHHHHHHHHHHh
Q 004067 710 KGKLLLVHGMIDENVHFRHTA-RLINALVAARKPYEILIFPDERHMPRRHRDRI------YMEERIWEFIERT 775 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~------~~~~~~~~fl~~~ 775 (776)
++|+|+++|.+|+++|+.... .+. +...++++++++++||... .+... .+.+.+.+||+..
T Consensus 298 ~vPtLiI~g~dDpi~p~~~~~~~~~----~~~p~~~l~~~~~gGH~~~-~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 298 RVPLLCIQAANDPIAPARGIPREDI----KANPNCLLIVTPSGGHLGW-VAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred CCCeEEEEcCCCCcCCcccCcHhHH----hcCCCEEEEECCCcceecc-ccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999999999999876432 222 2346789999999999752 22222 2467888888653
No 62
>PRK10985 putative hydrolase; Provisional
Probab=99.73 E-value=2.9e-16 Score=162.96 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=146.4
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
+.+...++.+||..+......... .+.+.|+||++||.+++.. .. ....++..|.++||.|+++|+||+|++
T Consensus 30 ~~~~~~~~~~dg~~~~l~w~~~~~---~~~~~p~vll~HG~~g~~~--~~---~~~~~~~~l~~~G~~v~~~d~rG~g~~ 101 (324)
T PRK10985 30 TPYWQRLELPDGDFVDLAWSEDPA---QARHKPRLVLFHGLEGSFN--SP---YAHGLLEAAQKRGWLGVVMHFRGCSGE 101 (324)
T ss_pred CcceeEEECCCCCEEEEecCCCCc---cCCCCCEEEEeCCCCCCCc--CH---HHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence 344455777888766544322111 1135689999999766432 11 123357788999999999999999876
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCc--eEEEEEcCCCCCcc----
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV--FQCAVSGAPVTSWD---- 676 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~--~~~~v~~~~~~~~~---- 676 (776)
...... .......+|+..+++++.++. ...+++++||||||.+++.+++++++. +.+++++++..+..
T Consensus 102 ~~~~~~----~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~ 175 (324)
T PRK10985 102 PNRLHR----IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSY 175 (324)
T ss_pred ccCCcc----eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHH
Confidence 432111 111224789999999998764 345899999999999888888776432 67777666654321
Q ss_pred --------ccccccc-----------ccccCC-----------------------CC----CCccchhcCChhhhhccCC
Q 004067 677 --------GYDTFYT-----------EKYMGL-----------------------PS----EDPVGYEYSSVMHHVHKMK 710 (776)
Q Consensus 677 --------~~~~~~~-----------~~~~~~-----------------------~~----~~~~~~~~~~~~~~~~~i~ 710 (776)
.+...+. ..+.+. +. .....|...+....+.+++
T Consensus 176 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~ 255 (324)
T PRK10985 176 RMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIR 255 (324)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCC
Confidence 0000000 000000 00 0012223344556678899
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC----CcHHHHHHHHHHHHHHh
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH----RDRIYMEERIWEFIERT 775 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~ 775 (776)
.|+|+++|++|.++++.....+.+ ...++++++++++||..... ....-..+.+.+||...
T Consensus 256 ~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 256 KPTLIIHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred CCEEEEecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 999999999999998765555432 23568899999999975221 12235567788888654
No 63
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.72 E-value=1.4e-16 Score=160.84 Aligned_cols=199 Identities=16% Similarity=0.175 Sum_probs=132.7
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
+.|+||++||.+++.. .|...+..|. .+|.|+++|+||+|.+..... .....++....+..++++
T Consensus 12 ~~~~iv~lhG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~i~~ 76 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS-------YWAPQLDVLT-QRFHVVTYDHRGTGRSPGELP-------PGYSIAHMADDVLQLLDA 76 (257)
T ss_pred CCCEEEEEcCCCcchh-------HHHHHHHHHH-hccEEEEEcCCCCCCCCCCCc-------ccCCHHHHHHHHHHHHHH
Confidence 4588999999876543 2333455554 579999999999998864321 112345555554444443
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-c---------------c---------cccccc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T---------------F---------YTEKYM 687 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-~---------------~---------~~~~~~ 687 (776)
. +..++.++||||||++++.++.++|+.++++|+.++........ . . +...++
T Consensus 77 ~--~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
T TIGR03611 77 L--NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWI 154 (257)
T ss_pred h--CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHh
Confidence 2 44689999999999999999999999999999887654321000 0 0 000000
Q ss_pred CC--CC------------CCc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEE
Q 004067 688 GL--PS------------EDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 688 ~~--~~------------~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 746 (776)
.. +. ... ..+...+....+.++++|+|+++|++|..+|++.++++++.+ .+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~ 230 (257)
T TIGR03611 155 SENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAAL----PNAQLK 230 (257)
T ss_pred hccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhc----CCceEE
Confidence 00 00 000 001112233456778899999999999999999888887765 456888
Q ss_pred EecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 747 IFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 747 ~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++++||.+ ..+.+.++.+.+.+||+
T Consensus 231 ~~~~~gH~~-~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 231 LLPYGGHAS-NVTDPETFNRALLDFLK 256 (257)
T ss_pred EECCCCCCc-cccCHHHHHHHHHHHhc
Confidence 999999987 55688889999999986
No 64
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.72 E-value=1.8e-16 Score=164.20 Aligned_cols=236 Identities=14% Similarity=0.118 Sum_probs=147.4
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc---c----------------cccccchhhhHHHHhCCc
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC---D----------------SWINTVDMRAQYLRSKGI 589 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~---~----------------~~~~~~~~~~~~l~~~G~ 589 (776)
|.+.||..+.++.|.|++ +..+|+++||..+..... . .+......+++.|.++||
T Consensus 2 ~~~~~g~~l~~~~~~~~~------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCCCeEEEeeeeccC------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 456789999999998853 447999999966554210 0 000011245889999999
Q ss_pred EEEEECCCCCCCCchhhhhhhh-hccCCccHHHHHHHHHHHHHc------------------CCCCCCcEEEEeechHHH
Q 004067 590 LVWKLDNRGTARRGLKFEASIK-HNCGRIDAEDQLTGAEWLIKQ------------------GLAKVGHIGLYGWSYGGY 650 (776)
Q Consensus 590 ~v~~~d~rg~g~~~~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~------------------~~id~~~i~l~G~S~GG~ 650 (776)
.|+++|+||||.+...-..... ..+ ...++|+...++.+.+. .+-...+++|+||||||.
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~ 154 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGN 154 (332)
T ss_pred cEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccH
Confidence 9999999999987532110000 000 11246677777766541 111135799999999999
Q ss_pred HHHHHHhhCCC--------ceEEEEEcCCCCCcccc--------c----------ccccccc-cCC-------CCC----
Q 004067 651 LSAITLARFPD--------VFQCAVSGAPVTSWDGY--------D----------TFYTEKY-MGL-------PSE---- 692 (776)
Q Consensus 651 ~a~~~a~~~~~--------~~~~~v~~~~~~~~~~~--------~----------~~~~~~~-~~~-------~~~---- 692 (776)
+++.++..+++ .++++|+.+|....... . ..+...+ ... +..
T Consensus 155 i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 234 (332)
T TIGR01607 155 IALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDII 234 (332)
T ss_pred HHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHH
Confidence 99998865432 57888877775321100 0 0000000 000 000
Q ss_pred --Cccchh-------------cC-ChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 693 --DPVGYE-------------YS-SVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 693 --~~~~~~-------------~~-~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
++-.+. .. .....+.++ +.|+|+++|++|.++++..+..+++++.. .+.++.++++++|.
T Consensus 235 ~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~ 312 (332)
T TIGR01607 235 KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHV 312 (332)
T ss_pred hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCC
Confidence 000000 00 001123445 57999999999999999998888876532 45788999999999
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 004067 755 PRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 755 ~~~~~~~~~~~~~~~~fl~ 773 (776)
+.....++++.+.+.+||+
T Consensus 313 i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 313 ITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CccCCCHHHHHHHHHHHhh
Confidence 8776668899999999986
No 65
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.72 E-value=3.8e-16 Score=159.04 Aligned_cols=213 Identities=16% Similarity=0.123 Sum_probs=139.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|.+++++..... ...|.|||+||.+++.. .|..++..|.+ +|.|+++|+||+|.|.....
T Consensus 10 ~~~~~~~~~~~~~------~~~~plvllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~----- 70 (276)
T TIGR02240 10 DGQSIRTAVRPGK------EGLTPLLIFNGIGANLE-------LVFPFIEALDP-DLEVIAFDVPGVGGSSTPRH----- 70 (276)
T ss_pred CCcEEEEEEecCC------CCCCcEEEEeCCCcchH-------HHHHHHHHhcc-CceEEEECCCCCCCCCCCCC-----
Confidence 6777888765321 12267899999766543 23445666654 69999999999998864211
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-------c---c---c
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-------G---Y---D 679 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~-------~---~---~ 679 (776)
....+++.+.+..+++.. +.+++.|+||||||.+++.+|.++|++++++|+.++..... . . .
T Consensus 71 ---~~~~~~~~~~~~~~i~~l--~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (276)
T TIGR02240 71 ---PYRFPGLAKLAARMLDYL--DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPR 145 (276)
T ss_pred ---cCcHHHHHHHHHHHHHHh--CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCch
Confidence 122444444444444432 34589999999999999999999999999999987654210 0 0 0
Q ss_pred ccccc--------cccC-----CCCCC-----------c-cch------hcCChhhhhccCCCcEEEEecCCCCccChHH
Q 004067 680 TFYTE--------KYMG-----LPSED-----------P-VGY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 680 ~~~~~--------~~~~-----~~~~~-----------~-~~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
..... .+.. .+... . ..+ ........+.++++|+|+++|++|..+++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~ 225 (276)
T TIGR02240 146 RYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLIN 225 (276)
T ss_pred hhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHH
Confidence 00000 0000 00000 0 000 0011224467889999999999999999998
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 729 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 729 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++.+.+ .+.+++++++ ||.+ ..+.++++.+.+.+|+++.
T Consensus 226 ~~~l~~~~----~~~~~~~i~~-gH~~-~~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 226 MRLLAWRI----PNAELHIIDD-GHLF-LITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred HHHHHHhC----CCCEEEEEcC-CCch-hhccHHHHHHHHHHHHHHh
Confidence 88887765 4567888875 9986 5678899999999999863
No 66
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.71 E-value=6.3e-15 Score=147.16 Aligned_cols=300 Identities=14% Similarity=0.158 Sum_probs=163.7
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+..|.+||+++.|.+..++ ..++|++|+++++.+|||+.+. .+.....++|
T Consensus 39 ~~~~ft~dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g-----------------------~~~~g~~~s~--- 90 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPG-----------------------DNTFGGFLSP--- 90 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS------------------------B-TTT-EE-T---
T ss_pred cCCCcCCCCCEEEEEeccCC--CcceEEEEcccCEEEECccCCC-----------------------CCccceEEec---
Confidence 78899999999999998665 4899999999999999997432 1223456888
Q ss_pred CceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccCcee--CCCCCEEEEEEC-----------------------Cc
Q 004067 138 KKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVIDPHL--SSDGTMIAFVRD-----------------------CE 191 (776)
Q Consensus 138 dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~--SpDg~~la~~~~-----------------------~~ 191 (776)
+++.|+|.. ...|+.+|+++.+.+ .+-..+..-.....| ..|+.+++.+.. ..
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~-~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEER-VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EE-EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred CCCeEEEEECCCeEEEEECCcCcEE-EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 999998875 458999999999987 554434333433455 458888887752 14
Q ss_pred EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC-CCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 192 LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD-SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 192 l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
|+.+++++|+.+.+..... |+ ..+.+||. ...|.|--. ....
T Consensus 170 i~~idl~tG~~~~v~~~~~----------wl--------gH~~fsP~dp~li~fCHE-Gpw~------------------ 212 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFEDTD----------WL--------GHVQFSPTDPTLIMFCHE-GPWD------------------ 212 (386)
T ss_dssp EEEEETTT--EEEEEEESS-----------E--------EEEEEETTEEEEEEEEE--S-TT------------------
T ss_pred EEEEECCCCceeEEEecCc----------cc--------cCcccCCCCCCEEEEecc-CCcc------------------
Confidence 9999999999988876543 22 25667774 556666432 1110
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEe-ecCceEEEEEEECCCC
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN-RSQTKLKVLKFDIKTG 349 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~-~~~~~~~l~~~d~~~g 349 (776)
.....|++.+.+++..+.+.. ......+..--|+|||+.|++.+. ++.....|+.+|++++
T Consensus 213 -----------~Vd~RiW~i~~dg~~~~~v~~-------~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 213 -----------LVDQRIWTINTDGSNVKKVHR-------RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp -----------TSS-SEEEEETTS---EESS----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred -----------eeceEEEEEEcCCCcceeeec-------CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 011357999999888887743 223567788899999997777655 4445778999999999
Q ss_pred ceEEEEEeccCceeecccccccCCCCccccCCe-EEEEecc-----CCceEEEEEeCCCceeeccccCC--eEE------
Q 004067 350 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK-----TGFRHLYLHDINGTCLGPITEGD--WMV------ 415 (776)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-----~g~~~l~~~~~~g~~~~~lt~~~--~~~------ 415 (776)
+.+.+..-+.... -..++.+.-+.-|++. -.-+.+. .+..-||++++..+....|..++ +.+
T Consensus 275 ~~~~~~~~p~~~H----~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 275 ERRRLMEMPWCSH----FMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp -EEEEEEE-SEEE----EEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CceEEEeCCceee----eEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 8877654321100 0011111000111110 0000000 12347888888887766665542 111
Q ss_pred --EEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 416 --EQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 416 --~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
--.+.||||||+|+|+++..++ ..||.+.+
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~--~~vY~v~i 382 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGP--PAVYLVEI 382 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS---EEEEEE-
T ss_pred cCCCCCccCCCCCEEEEECCCCCC--ccEEEEeC
Confidence 1224599999999999999876 78998887
No 67
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.71 E-value=7.3e-16 Score=157.65 Aligned_cols=216 Identities=14% Similarity=0.040 Sum_probs=139.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh
Q 004067 529 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 608 (776)
Q Consensus 529 ~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~ 608 (776)
+...++..+.+....+. +.|+||++||.++... .|..+...|++ +|.|+++|+||+|.+.....
T Consensus 10 ~~~~~~~~~~~~~~g~~-------~~~~vv~~hG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~- 73 (278)
T TIGR03056 10 RVTVGPFHWHVQDMGPT-------AGPLLLLLHGTGASTH-------SWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFR- 73 (278)
T ss_pred eeeECCEEEEEEecCCC-------CCCeEEEEcCCCCCHH-------HHHHHHHHHhh-CcEEEeecCCCCCCCCCccc-
Confidence 33346776776554332 2378999999766543 23445666654 69999999999998754321
Q ss_pred hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--------c-c
Q 004067 609 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--------Y-D 679 (776)
Q Consensus 609 ~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------~-~ 679 (776)
....++++.+.+..+++.. +.++++|+||||||.+++.++.++|++++++++.++...... + .
T Consensus 74 ------~~~~~~~~~~~l~~~i~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~ 145 (278)
T TIGR03056 74 ------FRFTLPSMAEDLSALCAAE--GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMA 145 (278)
T ss_pred ------cCCCHHHHHHHHHHHHHHc--CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhh
Confidence 1123556666666665543 335789999999999999999999998888887765432100 0 0
Q ss_pred cc-----cc--------------ccccC---CCCC--Cccchh--------------------cCChhhhhccCCCcEEE
Q 004067 680 TF-----YT--------------EKYMG---LPSE--DPVGYE--------------------YSSVMHHVHKMKGKLLL 715 (776)
Q Consensus 680 ~~-----~~--------------~~~~~---~~~~--~~~~~~--------------------~~~~~~~~~~i~~P~li 715 (776)
.. +. ..+.. .... ....+. .......+.++++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~li 225 (278)
T TIGR03056 146 RVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHL 225 (278)
T ss_pred HhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEE
Confidence 00 00 00000 0000 000000 00012235667899999
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++|++|..+|+...+.+.+.+ .++++.+++++||.+ ..+..+++.+.+.+||+
T Consensus 226 i~g~~D~~vp~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 226 IAGEEDKAVPPDESKRAATRV----PTATLHVVPGGGHLV-HEEQADGVVGLILQAAE 278 (278)
T ss_pred EEeCCCcccCHHHHHHHHHhc----cCCeEEEECCCCCcc-cccCHHHHHHHHHHHhC
Confidence 999999999988877776654 456899999999987 55678899999999974
No 68
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.70 E-value=8.6e-16 Score=155.10 Aligned_cols=231 Identities=16% Similarity=0.117 Sum_probs=145.8
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~ 604 (776)
+.+.|.. +|..+.+.++.|.+. +.+.||++|||+.... .+...+..+++.|+++||.|+++|+||+|.|..
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~-----~~~~vv~i~gg~~~~~---g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~ 73 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS-----HTTGVLIVVGGPQYRV---GSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEG 73 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC-----CCCeEEEEeCCccccC---CchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCC
Confidence 4567775 578899999999753 2356777777654321 011123345788999999999999999998754
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------c
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------Y 678 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------~ 678 (776)
... ... ....|+.++++++.+... ..++|+++||||||.+++.++.. +..++++|+.+|...... .
T Consensus 74 ~~~--~~~----~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 74 ENL--GFE----GIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC--CHH----HHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH
Confidence 321 111 135789999999987521 23579999999999999998765 467899999988743110 0
Q ss_pred ccccc---------ccccCCCCCCc---cc-------h-----------hcCChhhhhccCCCcEEEEecCCCCccChHH
Q 004067 679 DTFYT---------EKYMGLPSEDP---VG-------Y-----------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 679 ~~~~~---------~~~~~~~~~~~---~~-------~-----------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
...+. ..+....+... .. + ........+..+++|+|+++|..|...+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~ 225 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFA 225 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHH
Confidence 00000 00000000000 00 0 0001123355778999999999998753111
Q ss_pred H-----HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 729 T-----ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 729 ~-----~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
. ....+.+. ..++++..+++++|.+.....++++.+.+.+||++
T Consensus 226 ~~~~~~~~~~~~l~--~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 226 DSVLGEPAWRGALE--DPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhccChhhHHHhh--cCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 0 11212221 25688999999999887777889999999999963
No 69
>PLN02965 Probable pheophorbidase
Probab=99.70 E-value=7.8e-16 Score=154.64 Aligned_cols=198 Identities=13% Similarity=0.063 Sum_probs=130.3
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
+|||+||.+.+.. .|...+..|++.||.|+++|+||+|.|..... .....+++...+..+++.-
T Consensus 5 ~vvllHG~~~~~~-------~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~l-- 68 (255)
T PLN02965 5 HFVFVHGASHGAW-------CWYKLATLLDAAGFKSTCVDLTGAGISLTDSN-------TVSSSDQYNRPLFALLSDL-- 68 (255)
T ss_pred EEEEECCCCCCcC-------cHHHHHHHHhhCCceEEEecCCcCCCCCCCcc-------ccCCHHHHHHHHHHHHHhc--
Confidence 5899999765533 35556778888899999999999998853211 1122445555444444432
Q ss_pred CC-CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC---Cc---cccc-------ccccc---cccCCCC----CCc
Q 004067 636 KV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT---SW---DGYD-------TFYTE---KYMGLPS----EDP 694 (776)
Q Consensus 636 d~-~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~---~~---~~~~-------~~~~~---~~~~~~~----~~~ 694 (776)
+. .++.++||||||.+++.++.++|++++++|+.++.. .. ..+. ..+.. .....+. ...
T Consensus 69 ~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (255)
T PLN02965 69 PPDHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKP 148 (255)
T ss_pred CCCCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCH
Confidence 22 489999999999999999999999999988876541 10 0000 00000 0000000 000
Q ss_pred cc----h-hc--------------C-------Ch---hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 695 VG----Y-EY--------------S-------SV---MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 695 ~~----~-~~--------------~-------~~---~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
.. + .. . .. ...+.+++.|+|+++|++|..+|+...+.+.+.+ .+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~----~~a~~ 224 (255)
T PLN02965 149 EFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENW----PPAQT 224 (255)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhC----CcceE
Confidence 00 0 00 0 00 0123357899999999999999998887777665 45689
Q ss_pred EEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 746 LIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 746 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++++++||++ ..+.++++.+.+.+|++.
T Consensus 225 ~~i~~~GH~~-~~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 225 YVLEDSDHSA-FFSVPTTLFQYLLQAVSS 252 (255)
T ss_pred EEecCCCCch-hhcCHHHHHHHHHHHHHH
Confidence 9999999988 668899999999999875
No 70
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.70 E-value=8.5e-16 Score=158.22 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=137.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
+|.++++..+. ..|.||++||.+++.. .|..++..|++.+ .|+++|+||+|.|.....
T Consensus 15 ~g~~i~y~~~G---------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~~-~via~D~~G~G~S~~~~~----- 72 (295)
T PRK03592 15 LGSRMAYIETG---------EGDPIVFLHGNPTSSY-------LWRNIIPHLAGLG-RCLAPDLIGMGASDKPDI----- 72 (295)
T ss_pred CCEEEEEEEeC---------CCCEEEEECCCCCCHH-------HHHHHHHHHhhCC-EEEEEcCCCCCCCCCCCC-----
Confidence 77777776543 1268999999876643 3445677787775 999999999999865321
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC---cccccc-------cc
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDT-------FY 682 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~---~~~~~~-------~~ 682 (776)
.+...+..+.+..+++.- ..+++.++||||||.+++.++.++|++++++++.++... +..+.. .+
T Consensus 73 ---~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~ 147 (295)
T PRK03592 73 ---DYTFADHARYLDAWFDAL--GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQAL 147 (295)
T ss_pred ---CCCHHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHH
Confidence 123445545454444442 346899999999999999999999999999998886321 110000 00
Q ss_pred c----------------ccccCCC---CCCcc---ch-----------------hcC--------------ChhhhhccC
Q 004067 683 T----------------EKYMGLP---SEDPV---GY-----------------EYS--------------SVMHHVHKM 709 (776)
Q Consensus 683 ~----------------~~~~~~~---~~~~~---~~-----------------~~~--------------~~~~~~~~i 709 (776)
. ....... ....+ .+ ... .....+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 227 (295)
T PRK03592 148 RSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATS 227 (295)
T ss_pred hCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccC
Confidence 0 0000000 00000 00 000 001224567
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++|+|+++|.+|..+++....++...+. .+.++.+++++||.. ..+.++++.+.+.+||.+.
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRSWP---NQLEITVFGAGLHFA-QEDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHHhh---hhcceeeccCcchhh-hhcCHHHHHHHHHHHHHHh
Confidence 8999999999999996655555544432 356888999999987 5678899999999999864
No 71
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.70 E-value=6e-16 Score=164.38 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=145.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH---hCCcEEEEECCCCCCCCch
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~d~rg~g~~~~ 604 (776)
.+.+..+.++++....|.+. ...|.|||+||.+++.. .|.. .....|. +.+|.|+++|+||+|.|..
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~----~~k~~VVLlHG~~~s~~---~W~~---~~~~~L~~~~~~~yrVia~Dl~G~G~S~~ 248 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN----KAKEDVLFIHGFISSSA---FWTE---TLFPNFSDAAKSTYRLFAVDLLGFGRSPK 248 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC----CCCCeEEEECCCCccHH---HHHH---HHHHHHHHHhhCCCEEEEECCCCCCCCcC
Confidence 44444567899999988763 23478999999876643 2321 1123333 4799999999999998864
Q ss_pred hhhhhhhhccCCccHHHHHHHHH-HHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-----
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----- 678 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~----- 678 (776)
... ..+.+++..+.+. .+.+.. +.+++.++||||||++++.++.++|++++++++.++.......
T Consensus 249 p~~-------~~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~ 319 (481)
T PLN03087 249 PAD-------SLYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQAT 319 (481)
T ss_pred CCC-------CcCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHH
Confidence 311 1123555555552 444433 3468999999999999999999999999999988754211000
Q ss_pred ---------cccccc---------ccc---C--------------------CCCCCccchh----cC--Ch---------
Q 004067 679 ---------DTFYTE---------KYM---G--------------------LPSEDPVGYE----YS--SV--------- 702 (776)
Q Consensus 679 ---------~~~~~~---------~~~---~--------------------~~~~~~~~~~----~~--~~--------- 702 (776)
...+.. ++- . .+......+. .. ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 399 (481)
T PLN03087 320 QYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNII 399 (481)
T ss_pred HHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHH
Confidence 000000 000 0 0000000000 00 00
Q ss_pred ----------h-hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHH
Q 004067 703 ----------M-HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 771 (776)
Q Consensus 703 ----------~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 771 (776)
+ ....++++|+|+++|++|..+|++....+.+.+ .+.++++++++||.....+.+..+.+.+.+|
T Consensus 400 ~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~i----P~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F 475 (481)
T PLN03087 400 CGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKV----PRARVKVIDDKDHITIVVGRQKEFARELEEI 475 (481)
T ss_pred hchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhC----CCCEEEEeCCCCCcchhhcCHHHHHHHHHHH
Confidence 0 112268899999999999999999888887765 5679999999999864446788999999998
Q ss_pred HHH
Q 004067 772 IER 774 (776)
Q Consensus 772 l~~ 774 (776)
.+.
T Consensus 476 ~~~ 478 (481)
T PLN03087 476 WRR 478 (481)
T ss_pred hhc
Confidence 764
No 72
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.70 E-value=2.2e-16 Score=158.56 Aligned_cols=198 Identities=14% Similarity=0.114 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|+||++||.+.+.. .|..++..|. .||.|+++|+||+|.+.... ......++.+.+..+++.
T Consensus 12 ~~~~li~~hg~~~~~~-------~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~i~~ 75 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR-------MWDPVLPALT-PDFRVLRYDKRGHGLSDAPE--------GPYSIEDLADDVLALLDH 75 (251)
T ss_pred CCCeEEEEcCcccchh-------hHHHHHHHhh-cccEEEEecCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHH
Confidence 4589999999755533 2334455554 68999999999999875321 122355655555555554
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----------------------ccccccccCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----------------------TFYTEKYMGL 689 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~~~~~~ 689 (776)
. +.+++.++||||||++++.++.++|+.++++++.++........ ..+...+...
T Consensus 76 ~--~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
T TIGR02427 76 L--GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREA 153 (251)
T ss_pred h--CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccC
Confidence 3 34689999999999999999999999998888776543211000 0000000000
Q ss_pred CCCCc-------------------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC
Q 004067 690 PSEDP-------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 750 (776)
Q Consensus 690 ~~~~~-------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 750 (776)
..... ..+...+....+.++++|+++++|++|..++++....+.+.+ .+.+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 229 (251)
T TIGR02427 154 HPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLV----PGARFAEIRG 229 (251)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhC----CCceEEEECC
Confidence 00000 001111223445678899999999999999998777776654 4568899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHH
Q 004067 751 ERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 751 ~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++|.. ..+.++.+.+.+.+||+
T Consensus 230 ~gH~~-~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 230 AGHIP-CVEQPEAFNAALRDFLR 251 (251)
T ss_pred CCCcc-cccChHHHHHHHHHHhC
Confidence 99987 45677888888888873
No 73
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=2.5e-16 Score=145.59 Aligned_cols=216 Identities=20% Similarity=0.202 Sum_probs=153.5
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
.-.++|+..+|.+|++|+..|.... .+.|+|+..||..+... .|.. .-.++..||+|+.+|.||.|.+.
T Consensus 56 ~ydvTf~g~~g~rI~gwlvlP~~~~---~~~P~vV~fhGY~g~~g---~~~~-----~l~wa~~Gyavf~MdvRGQg~~~ 124 (321)
T COG3458 56 VYDVTFTGYGGARIKGWLVLPRHEK---GKLPAVVQFHGYGGRGG---EWHD-----MLHWAVAGYAVFVMDVRGQGSSS 124 (321)
T ss_pred EEEEEEeccCCceEEEEEEeecccC---CccceEEEEeeccCCCC---Cccc-----cccccccceeEEEEecccCCCcc
Confidence 3468888889999999999998753 68999999999765543 2321 23567899999999999998774
Q ss_pred hhh----hh---hhhhccC----------CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEE
Q 004067 604 LKF----EA---SIKHNCG----------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 666 (776)
Q Consensus 604 ~~~----~~---~~~~~~~----------~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~ 666 (776)
.+- .. ......| ...+.|...+++.+.+...+|.+||++.|.|.||.+++.+++..| +++++
T Consensus 125 ~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~ 203 (321)
T COG3458 125 QDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAV 203 (321)
T ss_pred ccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcc
Confidence 321 11 0001111 124789999999999999999999999999999999999999765 57999
Q ss_pred EEcCCCCC-cccccc-----ccc--ccccC--CCCCCccc---hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHH
Q 004067 667 VSGAPVTS-WDGYDT-----FYT--EKYMG--LPSEDPVG---YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 667 v~~~~~~~-~~~~~~-----~~~--~~~~~--~~~~~~~~---~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
++..|+.. +..... .|. ..|+. .+. ..+. +.-.+....+++++.|+|+..|.-|++|||.....++
T Consensus 204 ~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~-e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~y 282 (321)
T COG3458 204 VADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPK-EAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAY 282 (321)
T ss_pred cccccccccchhheeecccCcHHHHHHHHHhcCch-HHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHh
Confidence 98888753 211100 000 01111 111 1111 2233455667899999999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecCCCCCC
Q 004067 734 NALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+++. ...++.+||.-+|.-
T Consensus 283 N~l~---~~K~i~iy~~~aHe~ 301 (321)
T COG3458 283 NALT---TSKTIEIYPYFAHEG 301 (321)
T ss_pred hccc---CCceEEEeecccccc
Confidence 9883 455788888777864
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.5e-15 Score=145.58 Aligned_cols=282 Identities=11% Similarity=0.115 Sum_probs=186.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc--eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK--QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
++..+.||++|+++|-.+.+. ..-||.+..++.- ..++..| ..++....||
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh------------------------~~~V~yi~wS 278 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGH------------------------SQPVSYIMWS 278 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecc------------------------cCceEEEEEC
Confidence 347889999999999776644 2456776666541 2333332 3478889999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
| |.++|+.. -+..+.+||+++|+.+.....+-+......+|-|||.+++..+. +.++.|++++......- +.
T Consensus 279 P---DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~--gv- 352 (519)
T KOG0293|consen 279 P---DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE--GV- 352 (519)
T ss_pred C---CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc--cc-
Confidence 9 99999876 44569999999999883333332345778899999999776653 57999999876532221 00
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
+..++..++.++||++++....+ ..+++++
T Consensus 353 --------------r~~~v~dlait~Dgk~vl~v~~d------------------------------------~~i~l~~ 382 (519)
T KOG0293|consen 353 --------------RDPKVHDLAITYDGKYVLLVTVD------------------------------------KKIRLYN 382 (519)
T ss_pred --------------ccceeEEEEEcCCCcEEEEEecc------------------------------------cceeeec
Confidence 01125578899999999877643 3467787
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccCceeecccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFT 370 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~ 370 (776)
.++...+.+ ......+..++.|.||++++.-. ....|.+||++..... .-..+....+.. ...|.
T Consensus 383 ~e~~~dr~l---------ise~~~its~~iS~d~k~~LvnL----~~qei~LWDl~e~~lv~kY~Ghkq~~fiI-rSCFg 448 (519)
T KOG0293|consen 383 REARVDRGL---------ISEEQPITSFSISKDGKLALVNL----QDQEIHLWDLEENKLVRKYFGHKQGHFII-RSCFG 448 (519)
T ss_pred hhhhhhhcc---------ccccCceeEEEEcCCCcEEEEEc----ccCeeEEeecchhhHHHHhhcccccceEE-EeccC
Confidence 777655533 23345688899999999554433 3567999999843322 222233233332 12221
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
. -++.++.+..+++ .+|+|+...|++ ..|+.+...| +.++|+|....++.+++++++ +.||...
T Consensus 449 g-------~~~~fiaSGSED~--kvyIWhr~sgkll~~LsGHs~~v-NcVswNP~~p~m~ASasDDgt--IRIWg~~ 513 (519)
T KOG0293|consen 449 G-------GNDKFIASGSEDS--KVYIWHRISGKLLAVLSGHSKTV-NCVSWNPADPEMFASASDDGT--IRIWGPS 513 (519)
T ss_pred C-------CCcceEEecCCCc--eEEEEEccCCceeEeecCCccee-eEEecCCCCHHHhhccCCCCe--EEEecCC
Confidence 1 1334666666666 999999776664 5566655444 455699999999999888876 7888765
No 75
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=1.8e-15 Score=145.24 Aligned_cols=285 Identities=13% Similarity=0.097 Sum_probs=177.3
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+..++|||||++|| .|...++|-+||+++|+. +.+..|+ ..|.+.+|-|
T Consensus 160 VlcvawsPDgk~iA-----SG~~dg~I~lwdpktg~~~g~~l~gH~------------------------K~It~Lawep 210 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIA-----SGSKDGSIRLWDPKTGQQIGRALRGHK------------------------KWITALAWEP 210 (480)
T ss_pred EEEEEECCCcchhh-----ccccCCeEEEecCCCCCcccccccCcc------------------------cceeEEeecc
Confidence 67899999999999 444456899999998875 4444433 3788899977
Q ss_pred --cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCC
Q 004067 135 --TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 135 --~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~ 209 (776)
..|..++|+.. .++++.+||+..+... .+-.+....+..+.|--+| ++|... ..|-+|+...|..-+.
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~---- 283 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRE---- 283 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCceEE-EEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHh----
Confidence 45578888865 7899999999998887 4434444457888886554 777764 4588888777654332
Q ss_pred CCCceecCCcccceecccCC---cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC----CCCC-
Q 004067 210 NGNTVTHGLAEYIAQEEMDR---KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF----AGAS- 281 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~---~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~- 281 (776)
+.|...|++.-.+.. .+.=+|.|-|++.--.+ +.+ ..---+|.. .|+.
T Consensus 284 -----lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s--e~~-----------------~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 284 -----LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS--EEQ-----------------KKALERYEAVLKDSGERL 339 (480)
T ss_pred -----hcccchheeeeeccchhhhhccccccccccCCChH--HHH-----------------HHHHHHHHHhhccCccee
Confidence 223444543111100 00111223333211000 000 000000100 0110
Q ss_pred ---CCeEEEEEEEcCCCc-e-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 282 ---NVKVRLGVVSAAGGP-V-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 282 ---~~~~~l~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
.....+++|+....+ . .++ .+++..+..+.||||+++|+..+ -+..|.+||..+|+.-..+.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rm---------tgHq~lVn~V~fSPd~r~IASaS----FDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRM---------TGHQALVNHVSFSPDGRYIASAS----FDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred EEecCCceEEEecccccccchhhh---------hchhhheeeEEECCCccEEEEee----cccceeeeeCCCcchhhhhh
Confidence 123779999876433 2 233 67888999999999999998877 66779999999998644333
Q ss_pred -eccCceeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEE
Q 004067 357 -EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVY 429 (776)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~ 429 (776)
+-...|. ++|+.+. ++.....+. .|.+|+..+++..+ |..+..+|..+- |+|||+.+.
T Consensus 407 GHv~~VYq------------vawsaDsRLlVS~SkDs--TLKvw~V~tkKl~~DLpGh~DEVf~vD-wspDG~rV~ 467 (480)
T KOG0271|consen 407 GHVAAVYQ------------VAWSADSRLLVSGSKDS--TLKVWDVRTKKLKQDLPGHADEVFAVD-WSPDGQRVA 467 (480)
T ss_pred hccceeEE------------EEeccCccEEEEcCCCc--eEEEEEeeeeeecccCCCCCceEEEEE-ecCCCceee
Confidence 3222222 1454554 555445554 99999999888654 666777777765 999999644
No 76
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.69 E-value=6.1e-16 Score=155.92 Aligned_cols=200 Identities=12% Similarity=0.019 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
...|+||++||.+++.. .|..++..|+ .+|.|+++|+||+|.+..... .++.++.+.+..++.
T Consensus 14 ~~~~~iv~lhG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~~~---------~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD-------NLGVLARDLV-NDHDIIQVDMRNHGLSPRDPV---------MNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCCCEEEECCCCCchh-------HHHHHHHHHh-hCCeEEEECCCCCCCCCCCCC---------CCHHHHHHHHHHHHH
Confidence 35589999999876643 2334455665 469999999999998864211 123333333333333
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCC--CCCcc-ccccc-----------cc---------ccccC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP--VTSWD-GYDTF-----------YT---------EKYMG 688 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~--~~~~~-~~~~~-----------~~---------~~~~~ 688 (776)
.. ..+++.++||||||.+++.++.++|++++++++.++ ..... ..... .. ...+.
T Consensus 77 ~l--~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (255)
T PRK10673 77 AL--QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLN 154 (255)
T ss_pred Hc--CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcC
Confidence 22 345799999999999999999999999999888643 21100 00000 00 00000
Q ss_pred C---------CC-CCc---------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec
Q 004067 689 L---------PS-EDP---------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749 (776)
Q Consensus 689 ~---------~~-~~~---------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 749 (776)
. .. ... ..+........+.++++|+|+++|+.|..++......+.+.+ .+.++.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~ 230 (255)
T PRK10673 155 EEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIA 230 (255)
T ss_pred CHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeC
Confidence 0 00 000 000111111224566789999999999999887776666554 567899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 750 DERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 750 ~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++||.+ ..+.+..+.+.+.+||.++
T Consensus 231 ~~gH~~-~~~~p~~~~~~l~~fl~~~ 255 (255)
T PRK10673 231 GAGHWV-HAEKPDAVLRAIRRYLNDK 255 (255)
T ss_pred CCCCee-eccCHHHHHHHHHHHHhcC
Confidence 999976 6677889999999999763
No 77
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.69 E-value=7.2e-16 Score=140.36 Aligned_cols=145 Identities=23% Similarity=0.218 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
+||++||..++.. .+..+++.|+++||.|+.+|+|+++.+.. ..++.++++.+.+...
T Consensus 1 ~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~- 58 (145)
T PF12695_consen 1 VVVLLHGWGGSRR-------DYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP- 58 (145)
T ss_dssp EEEEECTTTTTTH-------HHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-
T ss_pred CEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-
Confidence 5899999876533 23456889999999999999999887632 1245555555433222
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEE
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLL 715 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~li 715 (776)
+.++|+++|||+||.+++.++.++ ..++++|+.+|..+ ...+.+.+.|+++
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~----------------------------~~~~~~~~~pv~~ 109 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD----------------------------SEDLAKIRIPVLF 109 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG----------------------------CHHHTTTTSEEEE
T ss_pred CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc----------------------------hhhhhccCCcEEE
Confidence 778999999999999999999988 67899999887210 1234566779999
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
++|++|..++++...++++++. .+.+++++++++|+
T Consensus 110 i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 110 IHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred EEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999999884 67899999999995
No 78
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.68 E-value=2.7e-15 Score=157.91 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=136.8
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
++++....+.+.. ...|+||++||.+++.. .|...+..|++ +|.|+++|+||+|.|..... .
T Consensus 73 ~i~Y~~~G~g~~~---~~gp~lvllHG~~~~~~-------~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~-------~ 134 (360)
T PLN02679 73 SINYLVKGSPEVT---SSGPPVLLVHGFGASIP-------HWRRNIGVLAK-NYTVYAIDLLGFGASDKPPG-------F 134 (360)
T ss_pred eEEEEEecCcccC---CCCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCCCC-------c
Confidence 6777766543110 12368999999776543 34445666665 79999999999998864211 0
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCCCCcc------ccc-----c---
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWD------GYD-----T--- 680 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~~~~~------~~~-----~--- 680 (776)
.+..+++...+..+.+.. ..+++.|+||||||.+++.++.. +|++++++|++++..... ... .
T Consensus 135 ~~~~~~~a~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (360)
T PLN02679 135 SYTMETWAELILDFLEEV--VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLW 212 (360)
T ss_pred cccHHHHHHHHHHHHHHh--cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHH
Confidence 122344444443333322 34689999999999999988874 699999999887542110 000 0
Q ss_pred --------------ccc----cc----c----cCCCCC--------------C---ccchh-------cCChhhhhccCC
Q 004067 681 --------------FYT----EK----Y----MGLPSE--------------D---PVGYE-------YSSVMHHVHKMK 710 (776)
Q Consensus 681 --------------~~~----~~----~----~~~~~~--------------~---~~~~~-------~~~~~~~~~~i~ 710 (776)
.+. .. + ...+.. . ...+. ..+....+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 292 (360)
T PLN02679 213 LIDFLLKQRGIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRIS 292 (360)
T ss_pred HHHHHhhchhhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcC
Confidence 000 00 0 000000 0 00000 011223466788
Q ss_pred CcEEEEecCCCCccChHHH-HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 711 GKLLLVHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+|+|+++|++|..+|+... .++++.+.+.-.+.++++++++||.+ ..+.++++.+.+.+||.+
T Consensus 293 ~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 293 LPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 9999999999999988642 23445555444678999999999986 678899999999999975
No 79
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.68 E-value=1.6e-15 Score=156.01 Aligned_cols=201 Identities=16% Similarity=0.198 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||++++.. .| +..+...+.+.||.|+++|+||+|.+....... ....++++.+.+..+.+..
T Consensus 25 ~~~vl~~hG~~g~~~---~~---~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 93 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH---EY---LENLRELLKEEGREVIMYDQLGCGYSDQPDDSD-----ELWTIDYFVDELEEVREKL 93 (288)
T ss_pred CCeEEEEcCCCCccH---HH---HHHHHHHHHhcCCEEEEEcCCCCCCCCCCCccc-----ccccHHHHHHHHHHHHHHc
Confidence 378899999766542 11 233455566669999999999999875321100 0123556666666665543
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-------ccccc-----------------------
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-------DTFYT----------------------- 683 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------~~~~~----------------------- 683 (776)
+..++.++||||||.+++.++..+|++++++++.++......+ ...+.
T Consensus 94 --~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
T TIGR01250 94 --GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQE 171 (288)
T ss_pred --CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHH
Confidence 3457999999999999999999999999999987765421100 00000
Q ss_pred --cccc----CC--CC-C---------Ccc---------------chhcCChhhhhccCCCcEEEEecCCCCccChHHHH
Q 004067 684 --EKYM----GL--PS-E---------DPV---------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 730 (776)
Q Consensus 684 --~~~~----~~--~~-~---------~~~---------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 730 (776)
..+. .. .. . ... .+...+....+.++++|+|+++|+.|.. ++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~ 250 (288)
T TIGR01250 172 AVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAR 250 (288)
T ss_pred HHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHH
Confidence 0000 00 00 0 000 0001122344567889999999999984 566666
Q ss_pred HHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 731 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 731 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.+.+.+ .+.++++++++||.. ..+.+.++.+.+.+||+
T Consensus 251 ~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 251 EMQELI----AGSRLVVFPDGSHMT-MIEDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHHhc----cCCeEEEeCCCCCCc-ccCCHHHHHHHHHHHhC
Confidence 665544 456789999999987 45678899999999874
No 80
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.67 E-value=5e-15 Score=143.47 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=141.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
-.|..+++..-.+. ..|+|+++||.|..-. .|+.....|+.+||+|+++|+||+|.|..+...
T Consensus 29 ~~gI~~h~~e~g~~-------~gP~illlHGfPe~wy-------swr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~--- 91 (322)
T KOG4178|consen 29 YKGIRLHYVEGGPG-------DGPIVLLLHGFPESWY-------SWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHI--- 91 (322)
T ss_pred EccEEEEEEeecCC-------CCCEEEEEccCCccch-------hhhhhhhhhhhcceEEEecCCCCCCCCCCCCCc---
Confidence 35666666555443 3499999999876532 455567889999999999999999988754221
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-----------cccc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-----------GYDT 680 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~-----------~~~~ 680 (776)
..+++..+...+..++..- ..+++.++||++|+++|..++..+|+++++.|..+...... ....
T Consensus 92 ---~~Yt~~~l~~di~~lld~L--g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~ 166 (322)
T KOG4178|consen 92 ---SEYTIDELVGDIVALLDHL--GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKS 166 (322)
T ss_pred ---ceeeHHHHHHHHHHHHHHh--ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCcc
Confidence 1223444444444444432 24799999999999999999999999999999876433200 0000
Q ss_pred cc----c-----c------------------ccc---CCC--------C---CC-------------------ccchhcC
Q 004067 681 FY----T-----E------------------KYM---GLP--------S---ED-------------------PVGYEYS 700 (776)
Q Consensus 681 ~~----~-----~------------------~~~---~~~--------~---~~-------------------~~~~~~~ 700 (776)
.| . + ... ..+ | ++ ...+...
T Consensus 167 ~y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~ 246 (322)
T KOG4178|consen 167 YYICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRN 246 (322)
T ss_pred ceeEeccccCcchhhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhC
Confidence 00 0 0 000 000 0 00 0001111
Q ss_pred C--hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 701 S--VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 701 ~--~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
. ......+++.|++++.|..|.+.+...-.+.+++... ...+.++++++||.. ..++.+++.+.+..||.+.
T Consensus 247 w~a~~~~~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp--~l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 247 WEAAPWALAKITIPVLFIWGDLDPVLPYPIFGELYRKDVP--RLTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred chhccccccccccceEEEEecCcccccchhHHHHHHHhhc--cccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 1 1223456778999999999999887633344443321 234788999999987 6788999999999999875
No 81
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.66 E-value=4.6e-15 Score=164.86 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=104.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhh
Q 004067 530 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 609 (776)
Q Consensus 530 ~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~ 609 (776)
++.||.+|.+.++.|+.. ++.|+||++||..........+. ...+..|+++||+|+++|+||+|.|...+..
T Consensus 2 ~~~DG~~L~~~~~~P~~~----~~~P~Il~~~gyg~~~~~~~~~~---~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~- 73 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAGG----GPVPVILSRTPYGKDAGLRWGLD---KTEPAWFVAQGYAVVIQDTRGRGASEGEFDL- 73 (550)
T ss_pred cCCCCCEEEEEEEecCCC----CCCCEEEEecCCCCchhhccccc---cccHHHHHhCCcEEEEEeccccccCCCceEe-
Confidence 567999999999999753 47899999999654321000111 1135678999999999999999998754321
Q ss_pred hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
++..+.+|+.++++++.++++.+ .+|+++|+||||++++.+|..+|+.++++++.++..++
T Consensus 74 ----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~ 134 (550)
T TIGR00976 74 ----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDL 134 (550)
T ss_pred ----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccch
Confidence 11346899999999999987655 79999999999999999999999999999998887653
No 82
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.66 E-value=4e-14 Score=141.50 Aligned_cols=309 Identities=13% Similarity=0.147 Sum_probs=162.7
Q ss_pred eEEEeecCCCceEEEEe----CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCcee
Q 004067 129 RYEWVKTSSKKKIIMVP----LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQR 203 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~----~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~ 203 (776)
...|.+ ||++|+|. ...++|++|+++++++ +||.+++.......+||+++.++|+.++ +|+.+++++++.+
T Consensus 40 ~~~ft~---dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 40 QNCFTD---DGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp S--B-T---TS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred CCCcCC---CCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 457888 99999997 3467999999999999 9999775445568999999999999864 7999999999998
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEE--CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW--SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.|..-+.. |.. .-.| ..|++.++.....+...... ... ....... ..
T Consensus 116 ~vy~~p~~---------~~g--------~gt~v~n~d~t~~~g~e~~~~d~~~l--~~~-------~~f~e~~-----~a 164 (386)
T PF14583_consen 116 VVYEVPDD---------WKG--------YGTWVANSDCTKLVGIEISREDWKPL--TKW-------KGFREFY-----EA 164 (386)
T ss_dssp EEEE--TT---------EEE--------EEEEEE-TTSSEEEEEEEEGGG-------SH-------HHHHHHH-----HC
T ss_pred EEEECCcc---------ccc--------ccceeeCCCccEEEEEEEeehhccCc--ccc-------HHHHHHH-----hh
Confidence 88776543 110 1234 56788877765432211000 000 0000000 11
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC-eEEEEEEeecCc--eEEEEEEECCCCceEEEEEec
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN-ILTAQVLNRSQT--KLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~--~~~l~~~d~~~g~~~~l~~~~ 358 (776)
.....|+.+|+++|+.+.+ ......+..+.|||.. ..|.|+...... +..||.++.+++..+.+.++.
T Consensus 165 ~p~~~i~~idl~tG~~~~v---------~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~ 235 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVV---------FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM 235 (386)
T ss_dssp ---EEEEEEETTT--EEEE---------EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---
T ss_pred CCCceEEEEECCCCceeEE---------EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC
Confidence 2337799999999999888 3455677889999954 577777543322 357999999998888886654
Q ss_pred cCceeecccccccCCCCccccCCeEEEEecc-CC-ceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TG-FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g-~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
..-+. ....|.+ ++..++|.+-. .+ ...|+.+++++++.+++....+ ..-.-.++||+.++--++. .
T Consensus 236 ~~e~~-gHEfw~~-------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~--~~H~~ss~Dg~L~vGDG~d-~ 304 (386)
T PF14583_consen 236 EGESV-GHEFWVP-------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW--CSHFMSSPDGKLFVGDGGD-A 304 (386)
T ss_dssp TTEEE-EEEEE-T-------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S--EEEEEE-TTSSEEEEEE----
T ss_pred CCccc-ccccccC-------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc--eeeeEEcCCCCEEEecCCC-C
Confidence 32222 2233333 44557666543 33 4578889999887777655443 2222367899865554432 1
Q ss_pred Cc------------eeeEEEEEeCCCCCCccccceeecCC----------C--CeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 437 PL------------ESHLYCAKLYPDWNHTLEAPVKLTNG----------K--GKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 437 ~~------------~~~l~~~~~~~~g~~~~~~~~~l~~~----------~--~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
|. ...||.+++.+ + ....|..+ . .-..++|||||++++|.+. ...++.|
T Consensus 305 p~~v~~~~~~~~~~~p~i~~~~~~~-~-----~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~v 377 (386)
T PF14583_consen 305 PVDVADAGGYKIENDPWIYLFDVEA-G-----RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD-MEGPPAV 377 (386)
T ss_dssp ----------------EEEEEETTT-T-----EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EE
T ss_pred CccccccccceecCCcEEEEecccc-C-----ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC-CCCCccE
Confidence 11 12566666631 2 11111111 0 1236799999999999964 5777999
Q ss_pred EEEEcCC
Q 004067 493 LLCSLQD 499 (776)
Q Consensus 493 ~~~~~~~ 499 (776)
|..++..
T Consensus 378 Y~v~i~~ 384 (386)
T PF14583_consen 378 YLVEIPD 384 (386)
T ss_dssp EEEE--C
T ss_pred EEEeCcc
Confidence 9988643
No 83
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.65 E-value=3.4e-15 Score=154.06 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=137.4
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..+...+|.++++..+.+++ .+.||++||++++... ......+...+|.|+++|+||+|.+....
T Consensus 7 ~~~~~~~~~~l~y~~~g~~~-------~~~lvllHG~~~~~~~--------~~~~~~~~~~~~~vi~~D~~G~G~S~~~~ 71 (306)
T TIGR01249 7 GYLNVSDNHQLYYEQSGNPD-------GKPVVFLHGGPGSGTD--------PGCRRFFDPETYRIVLFDQRGCGKSTPHA 71 (306)
T ss_pred CeEEcCCCcEEEEEECcCCC-------CCEEEEECCCCCCCCC--------HHHHhccCccCCEEEEECCCCCCCCCCCC
Confidence 35666678888887654221 2568999998765321 11233444578999999999999886321
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc----------
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---------- 676 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~---------- 676 (776)
. .......++.+.+..+.++. +.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 72 ~------~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 143 (306)
T TIGR01249 72 C------LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGG 143 (306)
T ss_pred C------cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcc
Confidence 1 01123556667677666553 34589999999999999999999999988888776543100
Q ss_pred ---ccccccc--------------------ccccCCCC-------------CC-------ccch------------hc--
Q 004067 677 ---GYDTFYT--------------------EKYMGLPS-------------ED-------PVGY------------EY-- 699 (776)
Q Consensus 677 ---~~~~~~~--------------------~~~~~~~~-------------~~-------~~~~------------~~-- 699 (776)
.+...+. ..+..... .. ...+ ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
T TIGR01249 144 ASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLE 223 (306)
T ss_pred hhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHH
Confidence 0000000 00000000 00 0000 00
Q ss_pred ---------CC----hhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHH
Q 004067 700 ---------SS----VMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 765 (776)
Q Consensus 700 ---------~~----~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 765 (776)
.+ ....+.++ ++|+|++||..|..+|+..+..+++.+ ...++++++++||.... +...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~gH~~~~----~~~~ 295 (306)
T TIGR01249 224 NHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAF----PEAELKVTNNAGHSAFD----PNNL 295 (306)
T ss_pred HhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCCCCC----hHHH
Confidence 00 11234566 489999999999999999888888765 45789999999998743 3345
Q ss_pred HHHHHHHHHhC
Q 004067 766 ERIWEFIERTL 776 (776)
Q Consensus 766 ~~~~~fl~~~l 776 (776)
+.+.+|++.+|
T Consensus 296 ~~i~~~~~~~~ 306 (306)
T TIGR01249 296 AALVHALETYL 306 (306)
T ss_pred HHHHHHHHHhC
Confidence 77777777654
No 84
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.65 E-value=2.8e-15 Score=150.98 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|......|.+ .|.|+++|+||+|.|... . ....+++... +.+.
T Consensus 14 ~~ivllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~------~---~~~~~~~~~~---l~~~-- 71 (256)
T PRK10349 14 VHLVLLHGWGLNAE-------VWRCIDEELSS-HFTLHLVDLPGFGRSRGF------G---ALSLADMAEA---VLQQ-- 71 (256)
T ss_pred CeEEEECCCCCChh-------HHHHHHHHHhc-CCEEEEecCCCCCCCCCC------C---CCCHHHHHHH---HHhc--
Confidence 56999999766543 34445667765 499999999999988531 1 1234444443 3332
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc------ccc------------ccc---ccccc-----C
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD------GYD------------TFY---TEKYM-----G 688 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~------~~~------------~~~---~~~~~-----~ 688 (776)
..+++.++||||||++++.+|.++|++++++++.++..... ... ..+ ...++ .
T Consensus 72 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
T PRK10349 72 -APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMG 150 (256)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHcc
Confidence 34689999999999999999999999999999876532210 000 000 00000 0
Q ss_pred CCC-----------------CCc-------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 689 LPS-----------------EDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 689 ~~~-----------------~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
... ... ..+...+....+.++++|+|+++|+.|.++|...+..+.+.+ .+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i----~~~~ 226 (256)
T PRK10349 151 TETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSE 226 (256)
T ss_pred CchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhC----CCCe
Confidence 000 000 001112333456788899999999999999887666555544 5679
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
++++|++||.+ ..+.++.+.+.+.+|-+
T Consensus 227 ~~~i~~~gH~~-~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 227 SYIFAKAAHAP-FISHPAEFCHLLVALKQ 254 (256)
T ss_pred EEEeCCCCCCc-cccCHHHHHHHHHHHhc
Confidence 99999999987 66889999999988854
No 85
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.65 E-value=2.2e-15 Score=152.15 Aligned_cols=212 Identities=22% Similarity=0.242 Sum_probs=139.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcc---cccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ---LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 609 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~---~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~ 609 (776)
||++|.+.+|.| .. ..++++|+||..|+..... ................|+++||+|+.+|.||.|.|+..+...
T Consensus 1 DGv~L~adv~~P-~~-~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~ 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GA-DGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM 78 (272)
T ss_dssp TS-EEEEEEEEE----TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT
T ss_pred CCCEEEEEEEec-CC-CCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC
Confidence 789999999999 21 2337999999999865321 000000001111123499999999999999999998766432
Q ss_pred hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-c-------ccc
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y-------DTF 681 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-~-------~~~ 681 (776)
...+.+|..++|+|+.++++ ...+|+++|.|++|+.++.+|+..|..++|++...+..++.. . ...
T Consensus 79 -----~~~e~~D~~d~I~W~~~Qpw-s~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 79 -----SPNEAQDGYDTIEWIAAQPW-SNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp -----SHHHHHHHHHHHHHHHHCTT-EEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred -----ChhHHHHHHHHHHHHHhCCC-CCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 33468999999999999976 557999999999999999999988888999999887766432 0 000
Q ss_pred cc-cc---------ccCC-------------------------------------CCCCccchhcCChhhhhccCCCcEE
Q 004067 682 YT-EK---------YMGL-------------------------------------PSEDPVGYEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 682 ~~-~~---------~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~i~~P~l 714 (776)
+. .+ .... .......|...++...+.++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 00 00 0000 0011233445555566789999999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCC-CCeEEEEecCCCCC
Q 004067 715 LVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM 754 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~ 754 (776)
++.|..|.... ..+.+.++++++.+ .+.++++-|. +|.
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997777 78899999998877 5677877765 774
No 86
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.65 E-value=8.5e-15 Score=141.95 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=139.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
+++..+...-..+.+ ...+.+|++||.+.+.. .|... ...|++ ...|+++|++|+|.|.++-.....
T Consensus 73 ~~~~~iw~~~~~~~~-----~~~~plVliHGyGAg~g---~f~~N----f~~La~-~~~vyaiDllG~G~SSRP~F~~d~ 139 (365)
T KOG4409|consen 73 PNGIEIWTITVSNES-----ANKTPLVLIHGYGAGLG---LFFRN----FDDLAK-IRNVYAIDLLGFGRSSRPKFSIDP 139 (365)
T ss_pred CCCceeEEEeecccc-----cCCCcEEEEeccchhHH---HHHHh----hhhhhh-cCceEEecccCCCCCCCCCCCCCc
Confidence 344444444444433 34567788999655433 23222 334555 899999999999999875332111
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--cc--------cc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YD--------TF 681 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~--~~--------~~ 681 (776)
. .....+++.|+..+... ...++.|+|||+||++|..+|.+||+++.-+++++|..-... +. .+
T Consensus 140 ~----~~e~~fvesiE~WR~~~--~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w 213 (365)
T KOG4409|consen 140 T----TAEKEFVESIEQWRKKM--GLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEW 213 (365)
T ss_pred c----cchHHHHHHHHHHHHHc--CCcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHH
Confidence 1 12335666666666554 345999999999999999999999999999999988632110 00 00
Q ss_pred ----------------------cc---------ccccCCCC---C-------------------------CccchhcCCh
Q 004067 682 ----------------------YT---------EKYMGLPS---E-------------------------DPVGYEYSSV 702 (776)
Q Consensus 682 ----------------------~~---------~~~~~~~~---~-------------------------~~~~~~~~~~ 702 (776)
+. ..+...+. + ..-.+.+...
T Consensus 214 ~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm 293 (365)
T KOG4409|consen 214 YKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPM 293 (365)
T ss_pred HhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhH
Confidence 00 00000110 0 0011222233
Q ss_pred hhhhccCC--CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 703 MHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 703 ~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++.+..++ +|+++|+|+.|..- .....++...+ ....++.+++|++||.. ..++++.+.+.+..++++.
T Consensus 294 ~~r~~~l~~~~pv~fiyG~~dWmD-~~~g~~~~~~~--~~~~~~~~~v~~aGHhv-ylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 294 IQRLRELKKDVPVTFIYGDRDWMD-KNAGLEVTKSL--MKEYVEIIIVPGAGHHV-YLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred HHHHHhhccCCCEEEEecCccccc-chhHHHHHHHh--hcccceEEEecCCCcee-ecCCHHHHHHHHHHHHhcc
Confidence 44455555 89999999999754 44555665554 34568999999999987 6788999999999988763
No 87
>PLN02872 triacylglycerol lipase
Probab=99.65 E-value=2.2e-15 Score=157.40 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=156.9
Q ss_pred hhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc--cchhhhHHHHhCCcEEEE
Q 004067 516 IKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMRAQYLRSKGILVWK 593 (776)
Q Consensus 516 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~--~~~~~~~~l~~~G~~v~~ 593 (776)
+.... -+.|+..+++.||..|....+.+.....+..+.|+|+++||...+.. .|.. ....++..|+++||.|++
T Consensus 37 i~~~g-y~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~---~w~~~~~~~sla~~La~~GydV~l 112 (395)
T PLN02872 37 IHPAG-YSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGD---AWFLNSPEQSLGFILADHGFDVWV 112 (395)
T ss_pred HHHcC-CCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccccccc---ceeecCcccchHHHHHhCCCCccc
Confidence 33443 47889999999999888887754332112234588999999765443 2311 112345678899999999
Q ss_pred ECCCCCCCC-chhhhhhhh-----hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC---ceE
Q 004067 594 LDNRGTARR-GLKFEASIK-----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQ 664 (776)
Q Consensus 594 ~d~rg~g~~-~~~~~~~~~-----~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~~ 664 (776)
+|.||++.+ +........ ..+......|+.++++++.+.. .+++.++||||||.+++.++ .+|+ .++
T Consensus 113 ~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~ 188 (395)
T PLN02872 113 GNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVE 188 (395)
T ss_pred ccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHH
Confidence 999998754 211111000 0111112469999999998653 36899999999999998555 4665 456
Q ss_pred EEEEcCCCCCccccc----------------------cc-------------ccc----------cccCC----------
Q 004067 665 CAVSGAPVTSWDGYD----------------------TF-------------YTE----------KYMGL---------- 689 (776)
Q Consensus 665 ~~v~~~~~~~~~~~~----------------------~~-------------~~~----------~~~~~---------- 689 (776)
++++.+|+..+.... .+ +.. .+.+.
T Consensus 189 ~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~ 268 (395)
T PLN02872 189 AAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRID 268 (395)
T ss_pred HHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhh
Confidence 666666653210000 00 000 00000
Q ss_pred ------CC---------------------------CCccchhc-CChhhhhccC--CCcEEEEecCCCCccChHHHHHHH
Q 004067 690 ------PS---------------------------EDPVGYEY-SSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLI 733 (776)
Q Consensus 690 ------~~---------------------------~~~~~~~~-~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~ 733 (776)
|. .+...|.. ..|...+.++ +.|+++++|++|..+++..+.++.
T Consensus 269 ~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~ 348 (395)
T PLN02872 269 YYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTL 348 (395)
T ss_pred HHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHH
Confidence 00 01111111 1233456777 479999999999999999888888
Q ss_pred HHHHHCCCCeEEEEecCCCCC--CCCCCcHHHHHHHHHHHHHHh
Q 004067 734 NALVAARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.+. ...+++.+++.+|. +...+.++.+++.+.+||+++
T Consensus 349 ~~Lp---~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 349 AELP---SKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred HHCC---CccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 8773 23578889999996 345677889999999999875
No 88
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.64 E-value=6.5e-15 Score=141.98 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=150.4
Q ss_pred CceEEEEEcCCCcEE-EEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVL-YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l-~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
......+..+||..+ ..|.-.|.. .+.|.||++||..|+.. ....+.+...+.++||.|++++.|||++
T Consensus 48 ~~~re~v~~pdg~~~~ldw~~~p~~-----~~~P~vVl~HGL~G~s~-----s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~ 117 (345)
T COG0429 48 AYTRERLETPDGGFIDLDWSEDPRA-----AKKPLVVLFHGLEGSSN-----SPYARGLMRALSRRGWLVVVFHFRGCSG 117 (345)
T ss_pred ccceEEEEcCCCCEEEEeeccCccc-----cCCceEEEEeccCCCCc-----CHHHHHHHHHHHhcCCeEEEEecccccC
Confidence 344556777777544 445444444 46699999999655543 1233455777889999999999999987
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHH-HHHHHHHhhCCC-ceEEEEE-cCCCCCc---
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG-YLSAITLARFPD-VFQCAVS-GAPVTSW--- 675 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG-~~a~~~a~~~~~-~~~~~v~-~~~~~~~--- 675 (776)
+... ...-+.....+|+..++++++++. ...++.++|.|+|| +++.+++.+-.+ .+.|++. .+|+ ++
T Consensus 118 ~~n~----~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~-Dl~~~ 190 (345)
T COG0429 118 EANT----SPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF-DLEAC 190 (345)
T ss_pred Cccc----CcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH-HHHHH
Confidence 7532 112222334799999999999875 35799999999999 666666654322 2344444 4443 21
Q ss_pred ----------cccccc---------------c-------------------------cccccCCCCCCccchhcCChhhh
Q 004067 676 ----------DGYDTF---------------Y-------------------------TEKYMGLPSEDPVGYEYSSVMHH 705 (776)
Q Consensus 676 ----------~~~~~~---------------~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 705 (776)
+.|... + .....|.+ +..+.|...|.+..
T Consensus 191 ~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~-da~dYYr~aSs~~~ 269 (345)
T COG0429 191 AYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFA-DAEDYYRQASSLPL 269 (345)
T ss_pred HHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCC-cHHHHHHhcccccc
Confidence 000000 0 00001111 12356778888999
Q ss_pred hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC--C-CC-CcHHHHHHHHHHHHHHh
Q 004067 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--R-RH-RDRIYMEERIWEFIERT 775 (776)
Q Consensus 706 ~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~-~~-~~~~~~~~~~~~fl~~~ 775 (776)
+++|+.|+||||+.+|++++++..-..... .+..+.+.+.+.+||.- . .. .......+++.+||+..
T Consensus 270 L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred ccccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 999999999999999999987644443332 46789999999999963 1 11 11235678888998765
No 89
>PRK06489 hypothetical protein; Provisional
Probab=99.64 E-value=6.4e-15 Score=155.49 Aligned_cols=230 Identities=14% Similarity=0.157 Sum_probs=136.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH-------HhCCcEEEEECCCCCCCCch
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-------RSKGILVWKLDNRGTARRGL 604 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l-------~~~G~~v~~~d~rg~g~~~~ 604 (776)
.+|..+++..+.+.......+..|.||++||++++.. .|.. ..+...+ ...+|.|+++|+||+|.|..
T Consensus 47 ~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~---~~~~--~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~ 121 (360)
T PRK06489 47 LPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGK---SFLS--PTFAGELFGPGQPLDASKYFIILPDGIGHGKSSK 121 (360)
T ss_pred cCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchh---hhcc--chhHHHhcCCCCcccccCCEEEEeCCCCCCCCCC
Confidence 3566677666543110000011478999999876543 2210 0112222 25689999999999998853
Q ss_pred hhhhhhhhccCCccHHHHHHHHHH-HHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-------
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEW-LIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW------- 675 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~-l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~------- 675 (776)
.... .......+.++++.+.+.. +.++. +.+++. |+||||||++++.++.++|++++++|+.++....
T Consensus 122 p~~~-~~~~~~~~~~~~~a~~~~~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~ 198 (360)
T PRK06489 122 PSDG-LRAAFPRYDYDDMVEAQYRLVTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWM 198 (360)
T ss_pred CCcC-CCCCCCcccHHHHHHHHHHHHHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHH
Confidence 2110 0001112345666654433 43433 334664 8999999999999999999999999987654210
Q ss_pred -ccc-cc-----------cccc----------cc-----------c-CCCC-C----------------Cccch------
Q 004067 676 -DGY-DT-----------FYTE----------KY-----------M-GLPS-E----------------DPVGY------ 697 (776)
Q Consensus 676 -~~~-~~-----------~~~~----------~~-----------~-~~~~-~----------------~~~~~------ 697 (776)
... .. .+.. .+ . ..+. . ....+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (360)
T PRK06489 199 WRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDS 278 (360)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 000 00 0000 00 0 0000 0 00000
Q ss_pred -hcCChhhhhccCCCcEEEEecCCCCccChHHH--HHHHHHHHHCCCCeEEEEecCC----CCCCCCCCcHHHHHHHHHH
Q 004067 698 -EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT--ARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWE 770 (776)
Q Consensus 698 -~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~--~~~~~~l~~~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~ 770 (776)
...+....+.+|++|+|+++|++|..+|+..+ +.+.+.+ .+.+++++|++ ||.+ . +.++.+.+.+.+
T Consensus 279 ~~~~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~i----p~a~l~~i~~a~~~~GH~~-~-e~P~~~~~~i~~ 352 (360)
T PRK06489 279 SRDYNPSPDLEKIKAPVLAINSADDERNPPETGVMEAALKRV----KHGRLVLIPASPETRGHGT-T-GSAKFWKAYLAE 352 (360)
T ss_pred hhccChHHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhC----cCCeEEEECCCCCCCCccc-c-cCHHHHHHHHHH
Confidence 01122334678899999999999999998765 4555544 56789999996 9987 4 589999999999
Q ss_pred HHHHh
Q 004067 771 FIERT 775 (776)
Q Consensus 771 fl~~~ 775 (776)
||+++
T Consensus 353 FL~~~ 357 (360)
T PRK06489 353 FLAQV 357 (360)
T ss_pred HHHhc
Confidence 99764
No 90
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.64 E-value=7.5e-15 Score=142.73 Aligned_cols=189 Identities=16% Similarity=0.085 Sum_probs=111.1
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhH-HHHhCCcEEEEECCCC------CCCCchhhhhhhhhcc-CCccHHHH-
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRG------TARRGLKFEASIKHNC-GRIDAEDQ- 622 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~rg------~g~~~~~~~~~~~~~~-~~~~~~D~- 622 (776)
++.|+||++||.+.+.. . +..... .+......++++.-+. .|.....|........ ...+.+++
T Consensus 12 ~~~~lvi~LHG~G~~~~---~----~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~ 84 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSED---L----FALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIE 84 (216)
T ss_dssp T-SEEEEEE--TTS-HH---H----HHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHH
T ss_pred CCceEEEEECCCCCCcc---h----hHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHH
Confidence 57799999999755532 1 111122 1223567788876542 1110012211100000 00112222
Q ss_pred ------HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccc
Q 004067 623 ------LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 696 (776)
Q Consensus 623 ------~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (776)
.+.++...+ ..++.+||++.|+|+||.+|+.++.++|..+.+++++++....... .
T Consensus 85 ~s~~~l~~li~~~~~-~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------~--- 146 (216)
T PF02230_consen 85 ESAERLDELIDEEVA-YGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------L--- 146 (216)
T ss_dssp HHHHHHHHHHHHHHH-TT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------------C---
T ss_pred HHHHHHHHHHHHHHH-cCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------------c---
Confidence 333333333 3489999999999999999999999999999999999886432100 0
Q ss_pred hhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 697 YEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 697 ~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
....... +.|++++||..|+++|...++...+.|++.+.++++..|++.||.+ ..+.+..+.+||+++
T Consensus 147 ------~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i-----~~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 147 ------EDRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI-----SPEELRDLREFLEKH 215 (216)
T ss_dssp ------HCCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred ------cccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----CHHHHHHHHHHHhhh
Confidence 0001111 5799999999999999999999999999999999999999999987 346678899999987
Q ss_pred C
Q 004067 776 L 776 (776)
Q Consensus 776 l 776 (776)
+
T Consensus 216 ~ 216 (216)
T PF02230_consen 216 I 216 (216)
T ss_dssp -
T ss_pred C
Confidence 5
No 91
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.64 E-value=7.7e-16 Score=152.78 Aligned_cols=221 Identities=18% Similarity=0.235 Sum_probs=118.3
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccc-----------ccccccccchhhhHHHHhCCcEE
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQL-----------VCDSWINTVDMRAQYLRSKGILV 591 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~-----------~~~~~~~~~~~~~~~l~~~G~~v 591 (776)
..|.+.|.+.++..+++++..|++.. ++.|+||++||..+... +.+.+.......+..|+++||+|
T Consensus 87 ~~EKv~f~~~p~~~vpaylLvPd~~~---~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVv 163 (390)
T PF12715_consen 87 TREKVEFNTTPGSRVPAYLLVPDGAK---GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVV 163 (390)
T ss_dssp EEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEE
T ss_pred EEEEEEEEccCCeeEEEEEEecCCCC---CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEE
Confidence 57788898889999999999999852 68999999999443321 11112222223578899999999
Q ss_pred EEECCCCCCCCchhhh---------hhh---h----hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHH
Q 004067 592 WKLDNRGTARRGLKFE---------ASI---K----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 655 (776)
Q Consensus 592 ~~~d~rg~g~~~~~~~---------~~~---~----~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 655 (776)
+++|.+|+|+.+..-. ... . .++......|...+++||.+++.||++||+++|+||||+.++++
T Consensus 164 la~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~L 243 (390)
T PF12715_consen 164 LAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWL 243 (390)
T ss_dssp EEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHH
Confidence 9999999987643110 000 1 11112345577889999999999999999999999999999999
Q ss_pred HhhCCCceEEEEEcCCCCCcccccccc----cccccCCCCC----CccchhcCChhhhhccC-CCcEEEEecCCCCccCh
Q 004067 656 LARFPDVFQCAVSGAPVTSWDGYDTFY----TEKYMGLPSE----DPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHF 726 (776)
Q Consensus 656 a~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~ 726 (776)
++..+ ++++.|+.+-+..+..-.... .+...+.+.. -+..+...+--+.++-+ ..|+|++.|..|..+|.
T Consensus 244 aALDd-RIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasliAPRPll~~nG~~Dklf~i 322 (390)
T PF12715_consen 244 AALDD-RIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASLIAPRPLLFENGGKDKLFPI 322 (390)
T ss_dssp HHH-T-T--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHTTTTS-EEESS-B-HHHHHH
T ss_pred HHcch-hhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHHhCCCcchhhcCCcccccHH
Confidence 99854 567777654432221100000 0000000100 01112222222223333 26999999999988754
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecC
Q 004067 727 RHTARLINALVAARKPYEILIFPD 750 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~ 750 (776)
.+..++.. ....+++++.||+
T Consensus 323 --V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 323 --VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp --HHHHHHHT-T-GGGEEE---GG
T ss_pred --HHHHHHhc-CCCcceEEeeccc
Confidence 44444443 2345789988886
No 92
>PRK07581 hypothetical protein; Validated
Probab=99.64 E-value=4.4e-15 Score=155.89 Aligned_cols=229 Identities=10% Similarity=0.058 Sum_probs=137.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh-
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK- 611 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~- 611 (776)
+|.++++..+.+... .+.|+||++||++++.. .|.... .....|...+|.|+++|+||+|.|.........
T Consensus 24 ~~~~l~y~~~G~~~~----~~~~~vll~~~~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~ 95 (339)
T PRK07581 24 PDARLAYKTYGTLNA----AKDNAILYPTWYSGTHQ---DNEWLI-GPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPF 95 (339)
T ss_pred CCceEEEEecCccCC----CCCCEEEEeCCCCCCcc---cchhhc-cCCCccCcCceEEEEecCCCCCCCCCCCCCCCCC
Confidence 456677666654221 23477888887655432 121000 001245567899999999999988643211000
Q ss_pred --hccCCccH-HHHHHHHHHHHHcCCCCCCcE-EEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-----------
Q 004067 612 --HNCGRIDA-EDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----------- 676 (776)
Q Consensus 612 --~~~~~~~~-~D~~~~i~~l~~~~~id~~~i-~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~----------- 676 (776)
..+....+ +|+.+....+.+.- ..+++ .|+||||||++|+.+|.++|++++++|+.++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~l--gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~ 173 (339)
T PRK07581 96 NAARFPHVTIYDNVRAQHRLLTEKF--GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLK 173 (339)
T ss_pred CCCCCCceeHHHHHHHHHHHHHHHh--CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHH
Confidence 11111123 34444344454433 33584 789999999999999999999999988875432100
Q ss_pred -------ccc----------------c-c----ccccccCC------CC-----------------CCccc-------hh
Q 004067 677 -------GYD----------------T-F----YTEKYMGL------PS-----------------EDPVG-------YE 698 (776)
Q Consensus 677 -------~~~----------------~-~----~~~~~~~~------~~-----------------~~~~~-------~~ 698 (776)
.+. . . +...++.. .. ..... +.
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (339)
T PRK07581 174 AALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQ 253 (339)
T ss_pred HHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhh
Confidence 000 0 0 00000000 00 00000 00
Q ss_pred ------c----CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC-CCCCCCCCCcHHHHHHH
Q 004067 699 ------Y----SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERHMPRRHRDRIYMEER 767 (776)
Q Consensus 699 ------~----~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~ 767 (776)
. .+....+.++++|+|+++|++|..+|+..+..+.+.+ .+.+++++++ +||.. +.+....+...
T Consensus 254 ~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~i----p~a~l~~i~~~~GH~~-~~~~~~~~~~~ 328 (339)
T PRK07581 254 RGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALI----PNAELRPIESIWGHLA-GFGQNPADIAF 328 (339)
T ss_pred hcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEeCCCCCccc-cccCcHHHHHH
Confidence 0 0223346678899999999999999998887776655 4568999998 89976 66778889999
Q ss_pred HHHHHHHhC
Q 004067 768 IWEFIERTL 776 (776)
Q Consensus 768 ~~~fl~~~l 776 (776)
+.+||++.|
T Consensus 329 ~~~~~~~~~ 337 (339)
T PRK07581 329 IDAALKELL 337 (339)
T ss_pred HHHHHHHHH
Confidence 999999864
No 93
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=127.85 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=142.4
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
...+.++-+.|. +.+..-.++. +..|+.|++|-.|.....++ ..-...++..|.++||+|+-+|+||.|.|.
T Consensus 4 ~~~v~i~Gp~G~-le~~~~~~~~-----~~~~iAli~HPHPl~gGtm~--nkvv~~la~~l~~~G~atlRfNfRgVG~S~ 75 (210)
T COG2945 4 MPTVIINGPAGR-LEGRYEPAKT-----PAAPIALICHPHPLFGGTMN--NKVVQTLARALVKRGFATLRFNFRGVGRSQ 75 (210)
T ss_pred CCcEEecCCccc-ceeccCCCCC-----CCCceEEecCCCccccCccC--CHHHHHHHHHHHhCCceEEeeccccccccc
Confidence 345566655554 5555443332 46788899987554332211 122344577788999999999999999987
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccc
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
..|- .|..+.+|..++++|+.++.. +...+.+.|+|+|+++++.++.+.|+. ...+...|..+. ++
T Consensus 76 G~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~--~d---- 141 (210)
T COG2945 76 GEFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINA--YD---- 141 (210)
T ss_pred Cccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCc--hh----
Confidence 6553 355679999999999999753 444568999999999999999998764 444554444330 00
Q ss_pred ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHH
Q 004067 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIY 763 (776)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 763 (776)
...+.....|.++++|+.|+++.+.......+ +.+..++++++++|.|. .+...
T Consensus 142 -------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~-----~~~~~~i~i~~a~HFF~--gKl~~ 195 (210)
T COG2945 142 -------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQE-----SIKITVITIPGADHFFH--GKLIE 195 (210)
T ss_pred -------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhc-----CCCCceEEecCCCceec--ccHHH
Confidence 12234456799999999999888776666655 36778999999999773 46778
Q ss_pred HHHHHHHHHH
Q 004067 764 MEERIWEFIE 773 (776)
Q Consensus 764 ~~~~~~~fl~ 773 (776)
+.+.+.+|+.
T Consensus 196 l~~~i~~~l~ 205 (210)
T COG2945 196 LRDTIADFLE 205 (210)
T ss_pred HHHHHHHHhh
Confidence 8888888884
No 94
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.64 E-value=1.3e-14 Score=154.11 Aligned_cols=205 Identities=19% Similarity=0.157 Sum_probs=126.6
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHH-HHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAE-DQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~-D~~~~i~~l~~ 631 (776)
..|+||++||.+++.. .|...+..|++ +|.|+++|+||+|.+.+.... ... ..... .+.+.+..+++
T Consensus 104 ~~p~vvllHG~~~~~~-------~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~--~~~--~~~~~~~~~~~i~~~~~ 171 (402)
T PLN02894 104 DAPTLVMVHGYGASQG-------FFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFT--CKS--TEETEAWFIDSFEEWRK 171 (402)
T ss_pred CCCEEEEECCCCcchh-------HHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcc--ccc--HHHHHHHHHHHHHHHHH
Confidence 4589999999766532 12233556655 599999999999988643110 000 00111 22333333333
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc----------c---------c-----------
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------T---------F----------- 681 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~----------~---------~----------- 681 (776)
.. +..++.++||||||++++.++.++|+.++++|+.+|..-..... . .
T Consensus 172 ~l--~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 249 (402)
T PLN02894 172 AK--NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKII 249 (402)
T ss_pred Hc--CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHH
Confidence 22 44689999999999999999999999999998887643110000 0 0
Q ss_pred -------------cc-cccc----C--CCCCCccc---------------------------hhcCChhhhhccCCCcEE
Q 004067 682 -------------YT-EKYM----G--LPSEDPVG---------------------------YEYSSVMHHVHKMKGKLL 714 (776)
Q Consensus 682 -------------~~-~~~~----~--~~~~~~~~---------------------------~~~~~~~~~~~~i~~P~l 714 (776)
+. .++. + ........ +...+....+.++++|++
T Consensus 250 ~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~l 329 (402)
T PLN02894 250 RGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTT 329 (402)
T ss_pred HhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEE
Confidence 00 0000 0 00000000 001122234677889999
Q ss_pred EEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 715 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 715 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+++|++|.+++ .....+.+.+ +..+++++++++||.. ..++++.+.+.+.+|++.+|
T Consensus 330 iI~G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~ 386 (402)
T PLN02894 330 FIYGRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYL 386 (402)
T ss_pred EEEeCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhc
Confidence 99999998664 4454544433 4457899999999976 67788999999999988764
No 95
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.63 E-value=7.7e-15 Score=147.24 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~ 633 (776)
|+||++||.+++.. .|..++..|+ .||.|+++|+||+|.+..... ......+++... +..+.+..
T Consensus 2 ~~vv~~hG~~~~~~-------~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~------~~~~~~~~~~~~~~~~~~~~~ 67 (251)
T TIGR03695 2 PVLVFLHGFLGSGA-------DWQALIELLG-PHFRCLAIDLPGHGSSQSPDE------IERYDFEEAAQDILATLLDQL 67 (251)
T ss_pred CEEEEEcCCCCchh-------hHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCc------cChhhHHHHHHHHHHHHHHHc
Confidence 68999999766543 3445577777 799999999999998854211 111234555554 55554442
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-------------cc--------cccccc-----
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-------------TF--------YTEKYM----- 687 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~-------------~~--------~~~~~~----- 687 (776)
+.+++.++||||||.+++.++.++|+.++++++.++...+.... .. +...+.
T Consensus 68 --~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (251)
T TIGR03695 68 --GIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLF 145 (251)
T ss_pred --CCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCcee
Confidence 45689999999999999999999999999999887654321100 00 000000
Q ss_pred C----CCCCCc----------------cch------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 688 G----LPSEDP----------------VGY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 688 ~----~~~~~~----------------~~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
. .+.... ..+ ...+....+.++++|+|+++|++|..++ .. .+.+.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~ 220 (251)
T TIGR03695 146 ASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLP 220 (251)
T ss_pred eecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCC
Confidence 0 000000 000 0112223456788999999999997653 22 233444456
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+.+++++|++||.+ ..+..+.+...+.+||+
T Consensus 221 ~~~~~~~~~~gH~~-~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 221 NLTLVIIANAGHNI-HLENPEAFAKILLAFLE 251 (251)
T ss_pred CCcEEEEcCCCCCc-CccChHHHHHHHHHHhC
Confidence 78999999999987 55677888888888873
No 96
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.63 E-value=4.9e-15 Score=150.21 Aligned_cols=227 Identities=19% Similarity=0.254 Sum_probs=138.8
Q ss_pred CCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC
Q 004067 522 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 601 (776)
Q Consensus 522 ~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~ 601 (776)
...+++.|+.. |.+|++++..|+.. ++.|+||++-|.-+.+. . .+..+.++++.+|++++++|+||.|.
T Consensus 163 ~~i~~v~iP~e-g~~I~g~LhlP~~~----~p~P~VIv~gGlDs~qe---D---~~~l~~~~l~~rGiA~LtvDmPG~G~ 231 (411)
T PF06500_consen 163 YPIEEVEIPFE-GKTIPGYLHLPSGE----KPYPTVIVCGGLDSLQE---D---LYRLFRDYLAPRGIAMLTVDMPGQGE 231 (411)
T ss_dssp SEEEEEEEEET-TCEEEEEEEESSSS----S-EEEEEEE--TTS-GG---G---GHHHHHCCCHHCT-EEEEE--TTSGG
T ss_pred CCcEEEEEeeC-CcEEEEEEEcCCCC----CCCCEEEEeCCcchhHH---H---HHHHHHHHHHhCCCEEEEEccCCCcc
Confidence 35788888884 58899999999853 68899888766433222 1 12223456889999999999999997
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc----
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---- 677 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---- 677 (776)
+...... .+. ..-..+++++|.+.++||..||+++|.|+||++|..+|..++++++++|+..|+..-..
T Consensus 232 s~~~~l~---~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~ 304 (411)
T PF06500_consen 232 SPKWPLT---QDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPE 304 (411)
T ss_dssp GTTT-S----S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HH
T ss_pred cccCCCC---cCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHH
Confidence 6432111 111 12356789999999999999999999999999999999888888999988877643211
Q ss_pred ----ccccc----cccccCCCCCCc----cchhcCChhh--hh--ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 678 ----YDTFY----TEKYMGLPSEDP----VGYEYSSVMH--HV--HKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 678 ----~~~~~----~~~~~~~~~~~~----~~~~~~~~~~--~~--~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
+...| ..+ +|....+. ......+... .+ .+..+|+|.+.+++|.++|.+....++. .+.
T Consensus 305 ~~~~~P~my~d~LA~r-lG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~ 379 (411)
T PF06500_consen 305 WQQRVPDMYLDVLASR-LGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SST 379 (411)
T ss_dssp HHTTS-HHHHHHHHHH-CT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBT
T ss_pred HHhcCCHHHHHHHHHH-hCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCC
Confidence 11111 111 12211111 1122333322 23 5566899999999999999887766655 245
Q ss_pred CeEEEEecCCC-CCCCCCCcHHHHHHHHHHHHHHhC
Q 004067 742 PYEILIFPDER-HMPRRHRDRIYMEERIWEFIERTL 776 (776)
Q Consensus 742 ~~~~~~~~~~~-H~~~~~~~~~~~~~~~~~fl~~~l 776 (776)
+-+...++... |. .....+..+.+||++.|
T Consensus 380 ~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 380 DGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp T-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 55667776533 42 34577899999998764
No 97
>PLN02578 hydrolase
Probab=99.63 E-value=9.4e-15 Score=153.70 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|......|++ +|.|+++|+||+|.|........... ..+|+.+.++.+
T Consensus 87 ~~vvliHG~~~~~~-------~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~~~~~~----~a~~l~~~i~~~----- 149 (354)
T PLN02578 87 LPIVLIHGFGASAF-------HWRYNIPELAK-KYKVYALDLLGFGWSDKALIEYDAMV----WRDQVADFVKEV----- 149 (354)
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCcccccCHHH----HHHHHHHHHHHh-----
Confidence 56789999766532 23344556654 69999999999998875421100000 123444444433
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc---------------cc--------cccc-------
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---------------DT--------FYTE------- 684 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------------~~--------~~~~------- 684 (776)
..+++.++||||||++++.+|.++|+++++++++++...+... .. .+..
T Consensus 150 -~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (354)
T PLN02578 150 -VKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLF 228 (354)
T ss_pred -ccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 2358999999999999999999999999999987654321100 00 0000
Q ss_pred ----------c----ccCCCC--------------CCc---cc-h----------hcCChhhhhccCCCcEEEEecCCCC
Q 004067 685 ----------K----YMGLPS--------------EDP---VG-Y----------EYSSVMHHVHKMKGKLLLVHGMIDE 722 (776)
Q Consensus 685 ----------~----~~~~~~--------------~~~---~~-~----------~~~~~~~~~~~i~~P~lii~G~~D~ 722 (776)
. ....+. .+. .. + ...+....+.++++|+|+++|++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~ 308 (354)
T PLN02578 229 WQAKQPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDP 308 (354)
T ss_pred HHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCC
Confidence 0 000000 000 00 0 0111223467789999999999999
Q ss_pred ccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 723 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 723 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.++...+.++.+.+ .+.+++++ ++||.+ ..+.++++.+.+.+|+.
T Consensus 309 ~v~~~~~~~l~~~~----p~a~l~~i-~~GH~~-~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 309 WVGPAKAEKIKAFY----PDTTLVNL-QAGHCP-HDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCHHHHHHHHHhC----CCCEEEEe-CCCCCc-cccCHHHHHHHHHHHHh
Confidence 99988887776654 45677788 589987 67889999999999985
No 98
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.63 E-value=5.7e-15 Score=147.73 Aligned_cols=190 Identities=17% Similarity=0.199 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|..++..|. .+|.|+++|+||+|.+... ...+.+++.+ .+.+..
T Consensus 5 ~~iv~~HG~~~~~~-------~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~---~~~~~~- 63 (245)
T TIGR01738 5 VHLVLIHGWGMNAE-------VFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAE---AIAAQA- 63 (245)
T ss_pred ceEEEEcCCCCchh-------hHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHH---HHHHhC-
Confidence 78999999766543 2344456665 4699999999999987531 1122444443 333332
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---cc------------cccc-------ccc-----c
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---YD------------TFYT-------EKY-----M 687 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---~~------------~~~~-------~~~-----~ 687 (776)
.+++.++||||||++++.++.++|++++++|+.++...+.. +. ..+. ..+ .
T Consensus 64 --~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (245)
T TIGR01738 64 --PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTL 141 (245)
T ss_pred --CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 25899999999999999999999999999988765432110 00 0000 000 0
Q ss_pred CCCCCCc------------------------cchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCe
Q 004067 688 GLPSEDP------------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743 (776)
Q Consensus 688 ~~~~~~~------------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 743 (776)
+...... ..+...+....+.++++|+|+++|++|..+++.....+.+.+ .++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~ 217 (245)
T TIGR01738 142 GTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLA----PHS 217 (245)
T ss_pred cCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhC----CCC
Confidence 1000000 000111223346788999999999999999988777776654 467
Q ss_pred EEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 744 EILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 744 ~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
++++++++||.+ ..+.+.++.+.+.+|+
T Consensus 218 ~~~~~~~~gH~~-~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 218 ELYIFAKAAHAP-FLSHAEAFCALLVAFK 245 (245)
T ss_pred eEEEeCCCCCCc-cccCHHHHHHHHHhhC
Confidence 899999999987 5577888888888875
No 99
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.63 E-value=8.6e-15 Score=156.47 Aligned_cols=195 Identities=17% Similarity=0.152 Sum_probs=128.9
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
.|.||++||.+++.. .|......|.. +|.|+++|+||+|.+.... ......++.+.+..+.+..
T Consensus 131 ~~~vl~~HG~~~~~~-------~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~~--------~~~~~~~~~~~~~~~~~~~ 194 (371)
T PRK14875 131 GTPVVLIHGFGGDLN-------NWLFNHAALAA-GRPVIALDLPGHGASSKAV--------GAGSLDELAAAVLAFLDAL 194 (371)
T ss_pred CCeEEEECCCCCccc-------hHHHHHHHHhc-CCEEEEEcCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHhc
Confidence 478999999766543 33444556655 5999999999999875321 1123566666666666543
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccccc----------------ccccCCCCCC----
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT----------------EKYMGLPSED---- 693 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~~~~~~~~---- 693 (776)
+..++.++|||+||++++.++.++|+++.++++.+|..........+. ......+...
T Consensus 195 --~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (371)
T PRK14875 195 --GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQM 272 (371)
T ss_pred --CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHH
Confidence 556899999999999999999999999999998876532110000000 0000000000
Q ss_pred -------------cc------------chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEe
Q 004067 694 -------------PV------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 748 (776)
Q Consensus 694 -------------~~------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 748 (776)
.. .....+....+.++++|+|+++|++|..+|+..+..+. ..+++.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~ 345 (371)
T PRK14875 273 VEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVL 345 (371)
T ss_pred HHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEe
Confidence 00 00011222346678899999999999999987654432 35688999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 749 PDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 749 ~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++||.+ ..+..+.+.+.+.+||++
T Consensus 346 ~~~gH~~-~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 346 PGAGHMP-QMEAAADVNRLLAEFLGK 370 (371)
T ss_pred CCCCCCh-hhhCHHHHHHHHHHHhcc
Confidence 9999976 556788899999999875
No 100
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.63 E-value=1.1e-14 Score=153.24 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=145.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccc----cccchhhh---HHHHhCCcEEEEECCCC--CCCCc
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW----INTVDMRA---QYLRSKGILVWKLDNRG--TARRG 603 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~----~~~~~~~~---~~l~~~G~~v~~~d~rg--~g~~~ 603 (776)
+|.++++..+.+.+. ...|+||++||.+++....... ...|..++ ..|...+|.|+++|+|| +|.++
T Consensus 14 ~~~~~~y~~~g~~~~----~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~ 89 (351)
T TIGR01392 14 SDVRVAYETYGTLNA----ERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTG 89 (351)
T ss_pred CCceEEEEeccccCC----CCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCC
Confidence 567788888876432 1237899999977654211000 00122222 25557899999999999 45444
Q ss_pred hhhhh-hh---hhccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc
Q 004067 604 LKFEA-SI---KHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 678 (776)
Q Consensus 604 ~~~~~-~~---~~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 678 (776)
..-.. .. ......+.++|+.+.+..++++. ..++ +.++||||||++++.++.++|++++++|+.++.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 167 (351)
T TIGR01392 90 PSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAW 167 (351)
T ss_pred CCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHH
Confidence 21100 00 01112345778877777776654 3357 999999999999999999999999999988765421100
Q ss_pred c---------c----------cc---------------------------cccccCCC-CC-----------Cccch---
Q 004067 679 D---------T----------FY---------------------------TEKYMGLP-SE-----------DPVGY--- 697 (776)
Q Consensus 679 ~---------~----------~~---------------------------~~~~~~~~-~~-----------~~~~~--- 697 (776)
. . .+ ...+.... .. ..+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (351)
T TIGR01392 168 CIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRY 247 (351)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHH
Confidence 0 0 00 00000000 00 00000
Q ss_pred ---------------------hcCC-------hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEE-e
Q 004067 698 ---------------------EYSS-------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI-F 748 (776)
Q Consensus 698 ---------------------~~~~-------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~-~ 748 (776)
...+ ....+.+|++|+|+++|+.|..+|+..++.+.+.+......++++. +
T Consensus 248 ~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~ 327 (351)
T TIGR01392 248 QGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIE 327 (351)
T ss_pred HHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeC
Confidence 0000 1245667889999999999999999999999988865443434444 4
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 749 PDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 749 ~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
+++||.. ..+.++++.+.+.+||+
T Consensus 328 ~~~GH~~-~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 328 SPYGHDA-FLVETDQVEELIRGFLR 351 (351)
T ss_pred CCCCcch-hhcCHHHHHHHHHHHhC
Confidence 6899977 56788999999999974
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.62 E-value=1.1e-12 Score=135.72 Aligned_cols=284 Identities=13% Similarity=0.018 Sum_probs=165.7
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
..|++||+++++....... ..++....|+| ||+.+++. .++.|++||+.++
T Consensus 11 ~~v~~~d~~t~~~~~~~~~------------------------~~~~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~ 63 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPV------------------------GQRPRGITLSK---DGKLLYVCASDSDTIQVIDLATG 63 (300)
T ss_pred CEEEEEECCCCceEEEEEC------------------------CCCCCceEECC---CCCEEEEEECCCCeEEEEECCCC
Confidence 4799999998876554431 12345678999 99987654 4578999999988
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEEC
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWS 236 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ws 236 (776)
+....+.... ....+.|+|||+.++... ++.|+++|+.+++.......+.. ...+.|+
T Consensus 64 ~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~------------------~~~~~~~ 123 (300)
T TIGR03866 64 EVIGTLPSGP--DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE------------------PEGMAVS 123 (300)
T ss_pred cEEEeccCCC--CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC------------------cceEEEC
Confidence 7763344332 245689999999876654 35799999987654322111110 2367899
Q ss_pred CCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceE
Q 004067 237 LDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYL 316 (776)
Q Consensus 237 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (776)
|||+.+++...+. ..++.||.++++...... .....
T Consensus 124 ~dg~~l~~~~~~~-----------------------------------~~~~~~d~~~~~~~~~~~---------~~~~~ 159 (300)
T TIGR03866 124 PDGKIVVNTSETT-----------------------------------NMAHFIDTKTYEIVDNVL---------VDQRP 159 (300)
T ss_pred CCCCEEEEEecCC-----------------------------------CeEEEEeCCCCeEEEEEE---------cCCCc
Confidence 9999888765321 124567777765543211 11123
Q ss_pred EEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccCceeecccccccCCCCcccc-CCeEEEEeccCCceE
Q 004067 317 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRH 394 (776)
Q Consensus 317 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~ 394 (776)
..++|+|||+.+++... ....|++||+++++.. .+.... .... .. ...+. .+.++ ++..+|.+.. +...
T Consensus 160 ~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~-~~~~-~~-~~~~~--~i~~s~dg~~~~~~~~-~~~~ 230 (300)
T TIGR03866 160 RFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEI-PGVH-PE-AVQPV--GIKLTKDGKTAFVALG-PANR 230 (300)
T ss_pred cEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecc-cccc-cc-cCCcc--ceEECCCCCEEEEEcC-CCCe
Confidence 45899999997766532 2346999999988653 332211 1000 00 00010 11222 2334444422 1237
Q ss_pred EEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcC
Q 004067 395 LYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDH 474 (776)
Q Consensus 395 l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~sp 474 (776)
|.+||+.+++..........+..+ .|+|+|++||.....++ .+.+|.+. .+. ...++.-+...+.++++|
T Consensus 231 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~--~i~v~d~~---~~~----~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLLVGQRVWQL-AFTPDEKYLLTTNGVSN--DVSVIDVA---ALK----VIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEEEECCCCcEEEEEEeCCCcceE-EECCCCCEEEEEcCCCC--eEEEEECC---CCc----EEEEEEcccccceeEeCC
Confidence 999998877654322222233344 49999998876654333 25555544 232 455665555566677665
No 102
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.62 E-value=3.3e-14 Score=144.91 Aligned_cols=214 Identities=14% Similarity=0.076 Sum_probs=134.8
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..++. +|.++++.... ..|.|||+||.+.... .|......|.+ +|.|+++|+||+|.|....
T Consensus 17 ~~~~~-~~~~i~y~~~G---------~~~~iv~lHG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~ 78 (286)
T PRK03204 17 RWFDS-SRGRIHYIDEG---------TGPPILLCHGNPTWSF-------LYRDIIVALRD-RFRCVAPDYLGFGLSERPS 78 (286)
T ss_pred eEEEc-CCcEEEEEECC---------CCCEEEEECCCCccHH-------HHHHHHHHHhC-CcEEEEECCCCCCCCCCCC
Confidence 34555 56667655321 2268999999764322 34445566654 6999999999999886421
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc-c-----cc-
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-G-----YD- 679 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~-~-----~~- 679 (776)
. .....+++.+.+..++++. +.+++.++||||||.+++.++..+|++++++|+.++..... . +.
T Consensus 79 ~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 149 (286)
T PRK03204 79 G-------FGYQIDEHARVIGEFVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSR 149 (286)
T ss_pred c-------cccCHHHHHHHHHHHHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHH
Confidence 1 1234677777777777654 44689999999999999999999999999998876542100 0 00
Q ss_pred --------------ccccccccC----CCCCC--ccchhc-----------------C---C-hhhh----hcc--CCCc
Q 004067 680 --------------TFYTEKYMG----LPSED--PVGYEY-----------------S---S-VMHH----VHK--MKGK 712 (776)
Q Consensus 680 --------------~~~~~~~~~----~~~~~--~~~~~~-----------------~---~-~~~~----~~~--i~~P 712 (776)
..+..+++. ..... ...+.. . . .+.. +.+ +++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 229 (286)
T PRK03204 150 VMSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKP 229 (286)
T ss_pred HhccccchhhhhhhhHHHHHhccccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCC
Confidence 000011110 00000 000000 0 0 0000 111 1789
Q ss_pred EEEEecCCCCccChHH-HHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRH-TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
+|+++|+.|..+++.. .+.+.+.+ .+.++++++++||.+ ..+.++++.+.+.+||
T Consensus 230 tliI~G~~D~~~~~~~~~~~~~~~i----p~~~~~~i~~aGH~~-~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 230 TLLVWGMKDVAFRPKTILPRLRATF----PDHVLVELPNAKHFI-QEDAPDRIAAAIIERF 285 (286)
T ss_pred eEEEecCCCcccCcHHHHHHHHHhc----CCCeEEEcCCCcccc-cccCHHHHHHHHHHhc
Confidence 9999999999886653 44444443 567899999999987 6788999999999987
No 103
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.61 E-value=4.1e-14 Score=146.37 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=150.9
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 531 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 531 ~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
...+..+.+.+|.|.. ....+.|+||++|||+........ ....+...+...|+.|+++|||-..+..
T Consensus 58 ~~~~~~~~~~~y~p~~--~~~~~~p~vly~HGGg~~~g~~~~---~~~~~~~~~~~~g~~vv~vdYrlaPe~~------- 125 (312)
T COG0657 58 GPSGDGVPVRVYRPDR--KAAATAPVVLYLHGGGWVLGSLRT---HDALVARLAAAAGAVVVSVDYRLAPEHP------- 125 (312)
T ss_pred CCCCCceeEEEECCCC--CCCCCCcEEEEEeCCeeeecChhh---hHHHHHHHHHHcCCEEEecCCCCCCCCC-------
Confidence 3345558899999922 122468999999998765432211 1234566677899999999999544331
Q ss_pred hhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCCCCccc-ccc--
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDG-YDT-- 680 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~~~~~~-~~~-- 680 (776)
....++|+.+++.++.++ ..+|+++|+++|+|.||.+++.++..-.+ ...+.++++|..+... ...
T Consensus 126 ----~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~ 201 (312)
T COG0657 126 ----FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLP 201 (312)
T ss_pred ----CCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchh
Confidence 122478999999999986 35789999999999999999999875332 4578888888877653 100
Q ss_pred ---------------cccccccCCCCCCccchhcCChhhh--hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCe
Q 004067 681 ---------------FYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 743 (776)
Q Consensus 681 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 743 (776)
.+...+......... ...+|+.. +.. -.|+++++|+.|.+.+ +...+.++|++.|+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~ 276 (312)
T COG0657 202 GYGEADLLDAAAILAWFADLYLGAAPDRED--PEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPV 276 (312)
T ss_pred hcCCccccCHHHHHHHHHHHhCcCccccCC--CccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeE
Confidence 011111111110000 11222222 233 4789999999999887 8899999999999999
Q ss_pred EEEEecCCCCCCC--CCCcHHHHHHHHHHHHHH
Q 004067 744 EILIFPDERHMPR--RHRDRIYMEERIWEFIER 774 (776)
Q Consensus 744 ~~~~~~~~~H~~~--~~~~~~~~~~~~~~fl~~ 774 (776)
+++.+++..|.|. ........+..+.+|++.
T Consensus 277 ~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 277 ELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred EEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999873 222344456677777764
No 104
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.60 E-value=1.8e-15 Score=149.28 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=123.5
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCC
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 636 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id 636 (776)
||++||.+++.. .|..++..|+ +||.|+++|+||+|.+..... ......++....+..+++.. .
T Consensus 1 vv~~hG~~~~~~-------~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~--~ 64 (228)
T PF12697_consen 1 VVFLHGFGGSSE-------SWDPLAEALA-RGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDAL--G 64 (228)
T ss_dssp EEEE-STTTTGG-------GGHHHHHHHH-TTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHT--T
T ss_pred eEEECCCCCCHH-------HHHHHHHHHh-CCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhccccc--c
Confidence 789999877653 3455677774 799999999999998865321 11223555555555555543 2
Q ss_pred CCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc------cccc---------------ccccC-CCCCCc
Q 004067 637 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------TFYT---------------EKYMG-LPSEDP 694 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------~~~~---------------~~~~~-~~~~~~ 694 (776)
.+++.++|||+||.+++.++.++|+.++++++.+|........ ..+. ..+.. ......
T Consensus 65 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (228)
T PF12697_consen 65 IKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEP 144 (228)
T ss_dssp TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccccccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccc
Confidence 3689999999999999999999999999999999887532110 0000 00000 000000
Q ss_pred ------------cc----hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCC
Q 004067 695 ------------VG----YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 758 (776)
Q Consensus 695 ------------~~----~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 758 (776)
.. +...+....+++++.|+++++|++|..++......+.+.+ .++++++++++||.+ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~ 219 (228)
T PF12697_consen 145 EDLIRSSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKL----PNAELVVIPGAGHFL-FL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEETTSSSTH-HH
T ss_pred cccccccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCcc-HH
Confidence 00 0112333567788999999999999999966666666543 578999999999986 33
Q ss_pred CcHHHH
Q 004067 759 RDRIYM 764 (776)
Q Consensus 759 ~~~~~~ 764 (776)
++++++
T Consensus 220 ~~p~~~ 225 (228)
T PF12697_consen 220 EQPDEV 225 (228)
T ss_dssp HSHHHH
T ss_pred HCHHHH
Confidence 445443
No 105
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.60 E-value=1.2e-13 Score=134.67 Aligned_cols=275 Identities=13% Similarity=0.073 Sum_probs=188.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+....||+||+.||.-+ ..+.+.+|+..+.+..+.+. .+...+....|+|
T Consensus 178 is~~~fS~ds~~laT~s-----wsG~~kvW~~~~~~~~~~l~-----------------------gH~~~v~~~~fhP-- 227 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGS-----WSGLVKVWSVPQCNLLQTLR-----------------------GHTSRVGAAVFHP-- 227 (459)
T ss_pred ceeeEeecCCCeEEEee-----cCCceeEeecCCcceeEEEe-----------------------ccccceeeEEEcc--
Confidence 46779999999999443 33468888888876655553 1224678899999
Q ss_pred CC--ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC
Q 004067 137 SK--KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 137 ~d--g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
. +..|+.. .|+.+.+|++++..+...|+.+. .++..++|.|+|+.|+-.+-. ...+||+.++..-.+-.+...
T Consensus 228 -~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~- 304 (459)
T KOG0272|consen 228 -VDSDLNLATASADGTVKLWKLSQETPLQDLEGHL-ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK- 304 (459)
T ss_pred -CCCccceeeeccCCceeeeccCCCcchhhhhcch-hhheeeeecCCCceeeecccccchhhcccccchhhHhhccccc-
Confidence 5 5567755 88999999999976665777665 469999999999999988754 466789988876544332221
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
+ +..++|.|||.-++....|. --.|||+
T Consensus 305 ----~------------v~~iaf~~DGSL~~tGGlD~------------------------------------~~RvWDl 332 (459)
T KOG0272|consen 305 ----G------------VFSIAFQPDGSLAATGGLDS------------------------------------LGRVWDL 332 (459)
T ss_pred ----c------------cceeEecCCCceeeccCccc------------------------------------hhheeec
Confidence 1 45789999999666544331 2378999
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeeccccccc
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~ 371 (776)
.+|...-+ +-++...+..++|||+|..|+..+ .+....+||+..... ..+..+.+- ...-.|.|
T Consensus 333 Rtgr~im~--------L~gH~k~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~ly~ipAH~nl---VS~Vk~~p 397 (459)
T KOG0272|consen 333 RTGRCIMF--------LAGHIKEILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSELYTIPAHSNL---VSQVKYSP 397 (459)
T ss_pred ccCcEEEE--------ecccccceeeEeECCCceEEeecC----CCCcEEEeeecccccceecccccch---hhheEecc
Confidence 98876544 145777899999999998877655 556688899876443 334333322 11122433
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCC-ceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
..+.++.++.-++ .+.+|...+ ...+.|..++..|.+.. .++||..|+-.+ .+.+ .+||.
T Consensus 398 -------~~g~fL~TasyD~--t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d~~~i~t~s-~DRT--~KLW~ 458 (459)
T KOG0272|consen 398 -------QEGYFLVTASYDN--TVKIWSTRTWSPLKSLAGHEGKVISLD-ISPDSQAIATSS-FDRT--IKLWR 458 (459)
T ss_pred -------cCCeEEEEcccCc--ceeeecCCCcccchhhcCCccceEEEE-eccCCceEEEec-cCce--eeecc
Confidence 2455777776677 666776544 45678888888888776 899998655444 4433 67774
No 106
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.60 E-value=1.4e-14 Score=144.77 Aligned_cols=189 Identities=10% Similarity=0.044 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.||++||.+++.. .|...+..| .+|.|+++|+||+|.|..... ..++++...+..++++.
T Consensus 3 p~vvllHG~~~~~~-------~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~~---------~~~~~~~~~l~~~l~~~- 63 (242)
T PRK11126 3 PWLVFLHGLLGSGQ-------DWQPVGEAL--PDYPRLYIDLPGHGGSAAISV---------DGFADVSRLLSQTLQSY- 63 (242)
T ss_pred CEEEEECCCCCChH-------HHHHHHHHc--CCCCEEEecCCCCCCCCCccc---------cCHHHHHHHHHHHHHHc-
Confidence 67999999877643 344456666 369999999999998864321 12444444444444433
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCC-ceEEEEEcCCCCCcccc-------------cccccc--------cc-----c
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGY-------------DTFYTE--------KY-----M 687 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~~v~~~~~~~~~~~-------------~~~~~~--------~~-----~ 687 (776)
..+++.++||||||.+++.++.++++ +++++++.++....... ...+.. .+ .
T Consensus 64 -~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (242)
T PRK11126 64 -NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVF 142 (242)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchh
Confidence 34699999999999999999999865 48888887654321100 000000 00 0
Q ss_pred -CCCCCCccc----------------h------hcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeE
Q 004067 688 -GLPSEDPVG----------------Y------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 744 (776)
Q Consensus 688 -~~~~~~~~~----------------~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 744 (776)
......... + ...+....+.++++|+++++|++|..+. .+.+. .+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~ 212 (242)
T PRK11126 143 ASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALP 212 (242)
T ss_pred hccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCe
Confidence 000000000 0 0011223566888999999999997542 22222 2578
Q ss_pred EEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 745 ILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 745 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+++++++||.+ ..+.++++.+.+.+||.+
T Consensus 213 ~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 213 LHVIPNAGHNA-HRENPAAFAASLAQILRL 241 (242)
T ss_pred EEEeCCCCCch-hhhChHHHHHHHHHHHhh
Confidence 99999999977 668899999999999975
No 107
>PRK11071 esterase YqiA; Provisional
Probab=99.59 E-value=2e-14 Score=135.65 Aligned_cols=178 Identities=17% Similarity=0.107 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHh--CCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
|.||++||.+++.. .|.. ..+...+.+ .+|.|+++|+||++ .+..+.+..+.++
T Consensus 2 p~illlHGf~ss~~---~~~~--~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~ 57 (190)
T PRK11071 2 STLLYLHGFNSSPR---SAKA--TLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLE 57 (190)
T ss_pred CeEEEECCCCCCcc---hHHH--HHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHH
Confidence 68999999766543 2321 122455554 37999999999763 1234444445444
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-ccccccccc---cccCCCCCC-ccch---hcCChhh
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-DGYDTFYTE---KYMGLPSED-PVGY---EYSSVMH 704 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~-~~~~~~~~~---~~~~~~~~~-~~~~---~~~~~~~ 704 (776)
. +.+++.++||||||++++.++.++|. + +++.+|..+. ......... .+......- ...+ ....+.
T Consensus 58 ~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 131 (190)
T PRK11071 58 H--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQID- 131 (190)
T ss_pred c--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCCc-
Confidence 3 34589999999999999999999884 3 4556665552 111111000 000000000 0001 111111
Q ss_pred hhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 705 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 705 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.+. ...|++++||++|+++|+..+.++++.+ .++++++++|.+.. .+++.+.+.+|+.
T Consensus 132 ~i~-~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~~---~~~~~~~i~~fl~ 189 (190)
T PRK11071 132 PLE-SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFVG---FERYFNQIVDFLG 189 (190)
T ss_pred cCC-ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchhh---HHHhHHHHHHHhc
Confidence 122 5578899999999999999999999853 56688999998844 4788899999975
No 108
>PLN00021 chlorophyllase
Probab=99.59 E-value=9.8e-14 Score=140.68 Aligned_cols=182 Identities=16% Similarity=0.108 Sum_probs=121.9
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhcc
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~ 614 (776)
..+++.++.|... +++|+|+++||+..... .|..+++.|+++||.|+++|++|.+....
T Consensus 37 ~~~p~~v~~P~~~----g~~PvVv~lHG~~~~~~-------~y~~l~~~Las~G~~VvapD~~g~~~~~~---------- 95 (313)
T PLN00021 37 PPKPLLVATPSEA----GTYPVLLFLHGYLLYNS-------FYSQLLQHIASHGFIVVAPQLYTLAGPDG---------- 95 (313)
T ss_pred CCceEEEEeCCCC----CCCCEEEEECCCCCCcc-------cHHHHHHHHHhCCCEEEEecCCCcCCCCc----------
Confidence 5689999999764 57899999999765422 23456788999999999999987542211
Q ss_pred CCccHHHHHHHHHHHHHc--------CCCCCCcEEEEeechHHHHHHHHHhhCCC-----ceEEEEEcCCCCCccccccc
Q 004067 615 GRIDAEDQLTGAEWLIKQ--------GLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~~~-----~~~~~v~~~~~~~~~~~~~~ 681 (776)
..+++|..++++|+.+. ..++.++++|+||||||.+++.++..+++ .+++++++.|+.......
T Consensus 96 -~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-- 172 (313)
T PLN00021 96 -TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-- 172 (313)
T ss_pred -hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc--
Confidence 11245566666666642 23567899999999999999999998764 578888888875421000
Q ss_pred ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCC-----c----cChH-HHHHHHHHHHHCCCCeEEEEecCC
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE-----N----VHFR-HTARLINALVAARKPYEILIFPDE 751 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~-----~----v~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 751 (776)
...+.. + . ......++..|+|++++..|. . .|.. +..++++.+ ..+..+++.+++
T Consensus 173 -----~~~p~i----l-~--~~~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---~~~~~~~~~~~~ 237 (313)
T PLN00021 173 -----QTPPPV----L-T--YAPHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---KAPAVHFVAKDY 237 (313)
T ss_pred -----CCCCcc----c-c--cCcccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc---CCCeeeeeecCC
Confidence 000100 0 0 001122367899999998763 2 2233 446777765 457788899999
Q ss_pred CCCC
Q 004067 752 RHMP 755 (776)
Q Consensus 752 ~H~~ 755 (776)
+|.-
T Consensus 238 gH~~ 241 (313)
T PLN00021 238 GHMD 241 (313)
T ss_pred Ccce
Confidence 9973
No 109
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.59 E-value=5.6e-14 Score=148.92 Aligned_cols=236 Identities=15% Similarity=0.072 Sum_probs=146.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccc------cccchhhh---HHHHhCCcEEEEECCCCC-CCC
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW------INTVDMRA---QYLRSKGILVWKLDNRGT-ARR 602 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~------~~~~~~~~---~~l~~~G~~v~~~d~rg~-g~~ 602 (776)
+|..+++..+...+. ...|+||++||.+++......+ ...|..++ ..+...+|.|+++|++|+ +++
T Consensus 31 ~~~~~~y~~~G~~~~----~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s 106 (379)
T PRK00175 31 PPVELAYETYGTLNA----DRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGS 106 (379)
T ss_pred CCceEEEEeccccCC----CCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCC
Confidence 455677777764221 2248999999987765411100 00122222 133356899999999983 433
Q ss_pred -chhhhhh---h-h-hccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 603 -GLKFEAS---I-K-HNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 603 -~~~~~~~---~-~-~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
+...... . + .....+.++++.+.+..++++. ..++ +.++||||||++++.++.++|++++++|++++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 184 (379)
T PRK00175 107 TGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARL 184 (379)
T ss_pred CCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCccc
Confidence 2211000 0 0 0111345777777777776654 3356 589999999999999999999999999988754321
Q ss_pred ccc---------c-----cc-----c----------------------------cccccC----C-C--C----CCccch
Q 004067 676 DGY---------D-----TF-----Y----------------------------TEKYMG----L-P--S----EDPVGY 697 (776)
Q Consensus 676 ~~~---------~-----~~-----~----------------------------~~~~~~----~-~--~----~~~~~~ 697 (776)
... . .. | ...+.. . + + .....+
T Consensus 185 ~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (379)
T PRK00175 185 SAQNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESY 264 (379)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHH
Confidence 000 0 00 0 000000 0 0 0 000000
Q ss_pred ---------hc---------------C--------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 698 ---------EY---------------S--------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 698 ---------~~---------------~--------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
.. . +....+.+|++|+|+|+|+.|..+|+..++.+.+.+...+..+++
T Consensus 265 l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l 344 (379)
T PRK00175 265 LRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSY 344 (379)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEE
Confidence 00 0 122345788999999999999999999999999998776666788
Q ss_pred EEec-CCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 746 LIFP-DERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 746 ~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
++++ ++||.. ..+.++++.+.+.+||.+.
T Consensus 345 ~~i~~~~GH~~-~le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 345 AEIDSPYGHDA-FLLDDPRYGRLVRAFLERA 374 (379)
T ss_pred EEeCCCCCchh-HhcCHHHHHHHHHHHHHhh
Confidence 8775 899987 5678889999999999764
No 110
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.59 E-value=1.6e-12 Score=120.36 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=184.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC-----ce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC-----KQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTR 129 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~-----~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (776)
.+++++..+++..|.+.+.++ ..+.+|++... .+ ++++.| ..-+..
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD----k~ii~W~L~~dd~~~G~~~r~~~GH------------------------sH~v~d 68 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD----KTIIVWKLTSDDIKYGVPVRRLTGH------------------------SHFVSD 68 (315)
T ss_pred eEEEEEeecCCCceEEEcccc----eEEEEEEeccCccccCceeeeeecc------------------------ceEecc
Confidence 368889999988888877665 45888888643 23 334432 235778
Q ss_pred EEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee
Q 004067 130 YEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH 207 (776)
Q Consensus 130 ~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~ 207 (776)
...++ ||++.+.. .++.+.+||+.+|+.++++..+. ..+...+||||.++|+--+. +-|-+|+..++....+..
T Consensus 69 v~~s~---dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~ 144 (315)
T KOG0279|consen 69 VVLSS---DGNFALSASWDGTLRLWDLATGESTRRFVGHT-KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE 144 (315)
T ss_pred eEEcc---CCceEEeccccceEEEEEecCCcEEEEEEecC-CceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec
Confidence 88899 99987765 78899999999998884554443 35889999999999988765 459999998887766655
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
..+ .+| +.-+.|+|.....+.++... .-.+
T Consensus 145 ~~~--------~~W--------VscvrfsP~~~~p~Ivs~s~----------------------------------Dktv 174 (315)
T KOG0279|consen 145 DSH--------REW--------VSCVRFSPNESNPIIVSASW----------------------------------DKTV 174 (315)
T ss_pred CCC--------cCc--------EEEEEEcCCCCCcEEEEccC----------------------------------CceE
Confidence 431 244 34788999853333333211 0347
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 367 (776)
.+||+.+-+.+.. ..++.+++..+.+||||..++. +.++..+++||++.++.-.-.++.+... .-
T Consensus 175 KvWnl~~~~l~~~--------~~gh~~~v~t~~vSpDGslcas----Ggkdg~~~LwdL~~~k~lysl~a~~~v~---sl 239 (315)
T KOG0279|consen 175 KVWNLRNCQLRTT--------FIGHSGYVNTVTVSPDGSLCAS----GGKDGEAMLWDLNEGKNLYSLEAFDIVN---SL 239 (315)
T ss_pred EEEccCCcchhhc--------cccccccEEEEEECCCCCEEec----CCCCceEEEEEccCCceeEeccCCCeEe---eE
Confidence 9999999887665 2578899999999999987765 3477889999999887633233333211 11
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccC--------CeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEG--------DWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~--------~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
.|+|... .+...... .|.+|+++++... .|... .....-.+.||+||.++|..-+...
T Consensus 240 ~fspnry--------wL~~at~~---sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~-- 306 (315)
T KOG0279|consen 240 CFSPNRY--------WLCAATAT---SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV-- 306 (315)
T ss_pred EecCCce--------eEeeccCC---ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc--
Confidence 3444322 12222222 4889998876421 12111 1222333569999998766655432
Q ss_pred eeeEEEEE
Q 004067 439 ESHLYCAK 446 (776)
Q Consensus 439 ~~~l~~~~ 446 (776)
+.+|.+.
T Consensus 307 -irv~qv~ 313 (315)
T KOG0279|consen 307 -IRVWQVA 313 (315)
T ss_pred -EEEEEee
Confidence 6777664
No 111
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.59 E-value=3.9e-14 Score=133.98 Aligned_cols=193 Identities=14% Similarity=0.133 Sum_probs=120.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch--hhhhhhhhcc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL--KFEASIKHNC 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~--~~~~~~~~~~ 614 (776)
|.+.+|.|+... ..+.|+||++||..++.. .+... ..+.+...++||+|+.|+......... +|.. .....
T Consensus 1 l~Y~lYvP~~~~--~~~~PLVv~LHG~~~~a~---~~~~~-s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~ 73 (220)
T PF10503_consen 1 LSYRLYVPPGAP--RGPVPLVVVLHGCGQSAE---DFAAG-SGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQR 73 (220)
T ss_pred CcEEEecCCCCC--CCCCCEEEEeCCCCCCHH---HHHhh-cCHHHHhhcCCeEEEcccccccCCCCCcccccc-ccccc
Confidence 468899998642 246899999999766543 12111 112344557899999999643221111 1211 11222
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc--cccccccccCCCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--DTFYTEKYMGLPSE 692 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~ 692 (776)
+..+...+...++++.++..||++||++.|+|.||+|+..+++.+|++|.++.+.++...-..- ...+.....+.. .
T Consensus 74 g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~~m~~g~~-~ 152 (220)
T PF10503_consen 74 GGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALSAMRSGPR-P 152 (220)
T ss_pred CccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHHHhhCCCC-C
Confidence 3345666778899999998999999999999999999999999999999999988876421100 000000000110 0
Q ss_pred Cccc-hhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 693 DPVG-YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 693 ~~~~-~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
.+.. ..........+ ..|++++||..|..|.+.+..++.+.+...
T Consensus 153 ~p~~~~~a~~~~g~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAGAYP--GYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhccCCC--CCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 0000 00000000011 249999999999999999999988887653
No 112
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.58 E-value=6.5e-14 Score=137.80 Aligned_cols=211 Identities=18% Similarity=0.158 Sum_probs=133.9
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 605 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~ 605 (776)
.+.++++.|. +.++.+.|... ++.|+||++||.++... .+...+..++..|+++||.|+.+|+||+|.+...
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~----~~~~~VlllHG~g~~~~---~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~ 73 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAV----GPRGVVIYLPPFAEEMN---KSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGD 73 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCC----CCceEEEEECCCccccc---chhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCc
Confidence 3556665665 67888877653 35689999999654321 1222334457888999999999999999988643
Q ss_pred hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc---
Q 004067 606 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY--- 682 (776)
Q Consensus 606 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~--- 682 (776)
....... ...+|+..+++++.+.. ..+++++||||||.+++.++.++|+.++++|+.+|+..-..+...+
T Consensus 74 ~~~~~~~----~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl 146 (266)
T TIGR03101 74 FAAARWD----VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRL 146 (266)
T ss_pred cccCCHH----HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHH
Confidence 3221111 12678888999988753 4689999999999999999999999999999999987643221110
Q ss_pred ---cccccCCCCC---------------CccchhcC-ChhhhhccC--------CCcEEEEecCCC-CccChHHHHHHHH
Q 004067 683 ---TEKYMGLPSE---------------DPVGYEYS-SVMHHVHKM--------KGKLLLVHGMID-ENVHFRHTARLIN 734 (776)
Q Consensus 683 ---~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~i--------~~P~lii~G~~D-~~v~~~~~~~~~~ 734 (776)
.+..-+.... ....|.-. .....+.++ ..++|++.-..+ .........++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (266)
T TIGR03101 147 RLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPKNCPVHWFEVRPEEGATLSPVFSRLGE 226 (266)
T ss_pred HHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCCCCceEEEEeccccCCCCCHHHHHHHH
Confidence 0000000000 00000000 001111111 346777765432 2233446788999
Q ss_pred HHHHCCCCeEEEEecCC
Q 004067 735 ALVAARKPYEILIFPDE 751 (776)
Q Consensus 735 ~l~~~~~~~~~~~~~~~ 751 (776)
.+++.|..++...+++.
T Consensus 227 ~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 227 QWVQSGVEVTVDLVPGP 243 (266)
T ss_pred HHHHcCCeEeeeecCCc
Confidence 99999999999999987
No 113
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.57 E-value=2.5e-12 Score=131.48 Aligned_cols=272 Identities=14% Similarity=0.102 Sum_probs=176.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|+|||+.|++.+. ...|++|++.+++........ ...+....|+|
T Consensus 12 i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~-----------------------~~~i~~~~~~~-- 61 (289)
T cd00200 12 VTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKGH-----------------------TGPVRDVAASA-- 61 (289)
T ss_pred EEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEecC-----------------------CcceeEEEECC--
Confidence 478999999999997664 246999999877643332211 13466889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+++.|++. .++.|++||+.+++....+..... .+..+.|+|+++.++... ++.|+++++.+++..........
T Consensus 62 -~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--- 136 (289)
T cd00200 62 -DGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--- 136 (289)
T ss_pred -CCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC---
Confidence 99888877 488999999998655534443332 478899999988777776 67899999987655443321110
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.+..+.|+|+++.|+....+ ..+++||+.+
T Consensus 137 --------------~i~~~~~~~~~~~l~~~~~~------------------------------------~~i~i~d~~~ 166 (289)
T cd00200 137 --------------WVNSVAFSPDGTFVASSSQD------------------------------------GTIKLWDLRT 166 (289)
T ss_pred --------------cEEEEEEcCcCCEEEEEcCC------------------------------------CcEEEEEccc
Confidence 14578899998766654311 3478899886
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCceeecccccccCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~~~~~~~~ 373 (776)
++....- ..+...+..+.|+|+++.+++... +..|.+||+.++...... .+......
T Consensus 167 ~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~i~~---------- 224 (289)
T cd00200 167 GKCVATL--------TGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLRGHENGVNS---------- 224 (289)
T ss_pred cccceeE--------ecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchhhcCCceEE----------
Confidence 6543321 234456888999999987776653 456999999876654443 22221111
Q ss_pred CCccccC-CeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 374 KGVTKYS-GGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 374 ~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
+.+.+ +.+++....+| .|++|+...++ ...+..+...+..+. |+++++.++..+ .++ ..++|
T Consensus 225 --~~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~-~d~--~i~iw 288 (289)
T cd00200 225 --VAFSPDGYLLASGSEDG--TIRVWDLRTGECVQTLSGHTNSVTSLA-WSPDGKRLASGS-ADG--TIRIW 288 (289)
T ss_pred --EEEcCCCcEEEEEcCCC--cEEEEEcCCceeEEEccccCCcEEEEE-ECCCCCEEEEec-CCC--eEEec
Confidence 12223 34555555466 88999987544 445554444555554 899988655443 333 26666
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.57 E-value=5.3e-12 Score=130.59 Aligned_cols=269 Identities=10% Similarity=0.001 Sum_probs=159.6
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.++.|++||+.+++....+... . ....+.|+|||+.++.... +.|+++++.+++.......+..
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~-~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~------------ 74 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG-Q-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD------------ 74 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC-C-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC------------
Confidence 4678999999988766344322 2 2567899999998765543 5699999998876542222111
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
...+.|+|||+.++...... ..|++||+.+++....
T Consensus 75 ------~~~~~~~~~g~~l~~~~~~~-----------------------------------~~l~~~d~~~~~~~~~--- 110 (300)
T TIGR03866 75 ------PELFALHPNGKILYIANEDD-----------------------------------NLVTVIDIETRKVLAE--- 110 (300)
T ss_pred ------ccEEEECCCCCEEEEEcCCC-----------------------------------CeEEEEECCCCeEEeE---
Confidence 22567999999776543211 3578999987654322
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-cCceeecccccccCCCCccccCCe
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGG 382 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 382 (776)
.........++|+|||+.++..... ...++.||.++++........ .+.. ..|++ ++..
T Consensus 111 ------~~~~~~~~~~~~~~dg~~l~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~s~-------dg~~ 170 (300)
T TIGR03866 111 ------IPVGVEPEGMAVSPDGKIVVNTSET---TNMAHFIDTKTYEIVDNVLVDQRPRF----AEFTA-------DGKE 170 (300)
T ss_pred ------eeCCCCcceEEECCCCCEEEEEecC---CCeEEEEeCCCCeEEEEEEcCCCccE----EEECC-------CCCE
Confidence 1111224568999999977766432 234667898877653322111 1100 11222 2223
Q ss_pred EEEEeccCCceEEEEEeCCCcee-eccccCC-------eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCc
Q 004067 383 FIWASEKTGFRHLYLHDINGTCL-GPITEGD-------WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT 454 (776)
Q Consensus 383 ~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~-------~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~ 454 (776)
+++.+..+| .|++||+++++. +.++... ..... ..+++||+.+++.....+ ...+| ++. .+.
T Consensus 171 l~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~s~dg~~~~~~~~~~~--~i~v~--d~~-~~~-- 240 (300)
T TIGR03866 171 LWVSSEIGG--TVSVIDVATRKVIKKITFEIPGVHPEAVQPVG-IKLTKDGKTAFVALGPAN--RVAVV--DAK-TYE-- 240 (300)
T ss_pred EEEEcCCCC--EEEEEEcCcceeeeeeeecccccccccCCccc-eEECCCCCEEEEEcCCCC--eEEEE--ECC-CCc--
Confidence 444444566 799999887653 3343210 01112 348999998777654432 24555 442 232
Q ss_pred cccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 455 LEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
....+.....+..++|+|||++|+...... ++|.++|..+++.++.+.
T Consensus 241 --~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 241 --VLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAALKVIKSIK 288 (300)
T ss_pred --EEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCCcEEEEEE
Confidence 223343344567889999999887654322 369999998888666553
No 115
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.57 E-value=2.3e-14 Score=150.36 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=113.8
Q ss_pred HHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCc-EEEEeechHHHHHHHHHhhCCC
Q 004067 583 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 583 ~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
.|...+|.|+++|+||+|.+... .....++...+..+++.. +.++ +.++||||||++++.++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~~----------~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLDV----------PIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChH
Confidence 35445799999999999866321 012344444444444433 3335 5799999999999999999999
Q ss_pred ceEEEEEcCCCCCccc----ccc---c-------------------------------ccccccCCCC-------CCccc
Q 004067 662 VFQCAVSGAPVTSWDG----YDT---F-------------------------------YTEKYMGLPS-------EDPVG 696 (776)
Q Consensus 662 ~~~~~v~~~~~~~~~~----~~~---~-------------------------------~~~~~~~~~~-------~~~~~ 696 (776)
+++++|+.++...... +.. . +...+...+. .....
T Consensus 162 ~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T PRK08775 162 RVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAED 241 (343)
T ss_pred hhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHH
Confidence 9999998876532100 000 0 0000000000 00000
Q ss_pred h---------hcCC---------h----hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecC-CCC
Q 004067 697 Y---------EYSS---------V----MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERH 753 (776)
Q Consensus 697 ~---------~~~~---------~----~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H 753 (776)
+ ...+ . ...+.++++|+|+++|+.|..+|+..+.++.+.+ ..+.+++++++ +||
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i---~p~a~l~~i~~~aGH 318 (343)
T PRK08775 242 YLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGL---GPRGSLRVLRSPYGH 318 (343)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHc---CCCCeEEEEeCCccH
Confidence 0 0000 0 0124678899999999999999988888877765 24578999985 999
Q ss_pred CCCCCCcHHHHHHHHHHHHHH
Q 004067 754 MPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 754 ~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.. ..+.++.+...+.+||.+
T Consensus 319 ~~-~lE~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 319 DA-FLKETDRIDAILTTALRS 338 (343)
T ss_pred HH-HhcCHHHHHHHHHHHHHh
Confidence 87 667899999999999975
No 116
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.57 E-value=9.6e-14 Score=144.99 Aligned_cols=216 Identities=11% Similarity=0.089 Sum_probs=138.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 532 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 532 ~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
.++..+.+....+. ..|.||++||.+.+.. .|..++..|++ +|.|+++|+||+|.|......
T Consensus 112 ~~~~~~~y~~~G~~-------~~~~ivllHG~~~~~~-------~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~--- 173 (383)
T PLN03084 112 SDLFRWFCVESGSN-------NNPPVLLIHGFPSQAY-------SYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPG--- 173 (383)
T ss_pred CCceEEEEEecCCC-------CCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCCccc---
Confidence 46676665543322 2378999999876543 34445666764 799999999999988653211
Q ss_pred hccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------ccc--
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------YDT-- 680 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~~~-- 680 (776)
....+.+.++...+..++++. ..+++.|+|||+||.+++.++.++|++++++|+.+|...... +..
T Consensus 174 -~~~~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l 250 (383)
T PLN03084 174 -YGFNYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFL 250 (383)
T ss_pred -ccccCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHH
Confidence 011234566666666555543 335899999999999999999999999999999887642110 000
Q ss_pred ---ccc-------ccccC--CCC----CCccc------------------hhcC-Ch----hhhh------ccCCCcEEE
Q 004067 681 ---FYT-------EKYMG--LPS----EDPVG------------------YEYS-SV----MHHV------HKMKGKLLL 715 (776)
Q Consensus 681 ---~~~-------~~~~~--~~~----~~~~~------------------~~~~-~~----~~~~------~~i~~P~li 715 (776)
.+. ...+. .+. +.... +... .. ...+ .+++.|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLi 330 (383)
T PLN03084 251 LGEIFSQDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITV 330 (383)
T ss_pred hhhhhhcchHHHHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEE
Confidence 000 00000 000 00000 0000 00 0001 246889999
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++|+.|..+++...+++++. .+.++.++++++|.+ ..+.++++.+.+.+||.+
T Consensus 331 I~G~~D~~v~~~~~~~~a~~-----~~a~l~vIp~aGH~~-~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 331 CWGLRDRWLNYDGVEDFCKS-----SQHKLIELPMAGHHV-QEDCGEELGGIISGILSK 383 (383)
T ss_pred EeeCCCCCcCHHHHHHHHHh-----cCCeEEEECCCCCCc-chhCHHHHHHHHHHHhhC
Confidence 99999999998877666653 256899999999977 668899999999999863
No 117
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=137.21 Aligned_cols=239 Identities=16% Similarity=0.087 Sum_probs=158.7
Q ss_pred CCCceEEEEEcCCCcEEEEEEEcCCCCCCC--CCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC
Q 004067 521 LEPPDIVQIQANDGTVLYGALYKPDESRYG--PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 598 (776)
Q Consensus 521 ~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~--~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg 598 (776)
....++..++.+||-.+..-.+.+....+. ....|+||++||-.++.. ......++..+.+.||.|+.++.||
T Consensus 90 ~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~-----~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 90 PVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSH-----ESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCCh-----hHHHHHHHHHHHhCCcEEEEECCCC
Confidence 456777888888998888777766543211 245699999999666543 1233445666778999999999999
Q ss_pred CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC---CCceEEEEEcCCCCCc
Q 004067 599 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSW 675 (776)
Q Consensus 599 ~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---~~~~~~~v~~~~~~~~ 675 (776)
++++.-.-. .-+-....+|+.+++++++++. ...++..+|.||||.+.+.++++. ..+..|+.+.+|+--.
T Consensus 165 ~~g~~LtTp----r~f~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~ 238 (409)
T KOG1838|consen 165 LGGSKLTTP----RLFTAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLL 238 (409)
T ss_pred CCCCccCCC----ceeecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhh
Confidence 988743211 1222234889999999999885 346899999999999999999864 3355666666665311
Q ss_pred --------c----ccc--------------------------------------ccccccccCCCCCCccchhcCChhhh
Q 004067 676 --------D----GYD--------------------------------------TFYTEKYMGLPSEDPVGYEYSSVMHH 705 (776)
Q Consensus 676 --------~----~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (776)
. .|. ..+....++.+. ..+.|...++...
T Consensus 239 ~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~-~deYY~~aSs~~~ 317 (409)
T KOG1838|consen 239 AASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS-VDEYYKKASSSNY 317 (409)
T ss_pred hhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc-HHHHHhhcchhhh
Confidence 0 000 000000111111 2366778899999
Q ss_pred hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC---cHHHHHHH-HHHHHHH
Q 004067 706 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR---DRIYMEER-IWEFIER 774 (776)
Q Consensus 706 ~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~-~~~fl~~ 774 (776)
+++|+.|+|+|++.+|+++|.. +.-.-+ ..+++++-+++-..+||--.... ....+++. +.+|+.+
T Consensus 318 v~~I~VP~L~ina~DDPv~p~~-~ip~~~--~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 318 VDKIKVPLLCINAADDPVVPEE-AIPIDD--IKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred cccccccEEEEecCCCCCCCcc-cCCHHH--HhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 9999999999999999999875 222211 22357888888889999632211 33444555 7777764
No 118
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=140.57 Aligned_cols=204 Identities=17% Similarity=0.199 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhC-CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
+..|.||++||...+.. .|+.....|.+. |+.|+++|.+|+|.++.... ...+...+....+..+.
T Consensus 56 ~~~~pvlllHGF~~~~~-------~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~------~~~y~~~~~v~~i~~~~ 122 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGASSF-------SWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPR------GPLYTLRELVELIRRFV 122 (326)
T ss_pred CCCCcEEEeccccCCcc-------cHhhhccccccccceEEEEEecCCCCcCCCCCC------CCceehhHHHHHHHHHH
Confidence 35689999999766433 333334444443 69999999999884432111 11245667777777666
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEE---EcCCCCCccccc---------------------------c
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV---SGAPVTSWDGYD---------------------------T 680 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v---~~~~~~~~~~~~---------------------------~ 680 (776)
.... ..++.++||||||++|..+|+.+|+.++.++ +..+........ .
T Consensus 123 ~~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 200 (326)
T KOG1454|consen 123 KEVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVR 200 (326)
T ss_pred Hhhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchh
Confidence 5542 2459999999999999999999999999998 444332210000 0
Q ss_pred cccccc---------------------cCCC-----CCC--ccch---h--cCChhhhhccCC-CcEEEEecCCCCccCh
Q 004067 681 FYTEKY---------------------MGLP-----SED--PVGY---E--YSSVMHHVHKMK-GKLLLVHGMIDENVHF 726 (776)
Q Consensus 681 ~~~~~~---------------------~~~~-----~~~--~~~~---~--~~~~~~~~~~i~-~P~lii~G~~D~~v~~ 726 (776)
.+.+.. +..+ ..+ .+.+ . .......+.++. +|+|+++|..|.++|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~ 280 (326)
T KOG1454|consen 201 LVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPL 280 (326)
T ss_pred heeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCH
Confidence 000000 0000 000 0000 0 123444566776 9999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 727 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.+..+.+.+ .++++.+++++||.. +.+.++++.+.+..|+.++
T Consensus 281 ~~~~~~~~~~----pn~~~~~I~~~gH~~-h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 281 ELAEELKKKL----PNAELVEIPGAGHLP-HLERPEEVAALLRSFIARL 324 (326)
T ss_pred HHHHHHHhhC----CCceEEEeCCCCccc-ccCCHHHHHHHHHHHHHHh
Confidence 8666665544 778999999999987 6689999999999999875
No 119
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.55 E-value=1.4e-13 Score=144.81 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=140.2
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
+..+.|.|.... ...+.||++||......+... ..+..++.+|+++||.|+++|+||+|.+.... .+..
T Consensus 48 ~~l~~~~~~~~~---~~~~pvl~v~~~~~~~~~~d~--~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~------~~~d 116 (350)
T TIGR01836 48 VVLYRYTPVKDN---THKTPLLIVYALVNRPYMLDL--QEDRSLVRGLLERGQDVYLIDWGYPDRADRYL------TLDD 116 (350)
T ss_pred EEEEEecCCCCc---CCCCcEEEeccccccceeccC--CCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC------CHHH
Confidence 455556665421 223458889985322221111 12345688999999999999999887543211 1111
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccc-----------------
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------------- 679 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~----------------- 679 (776)
+...++.+++++++++. ...++.++||||||.+++.+++.+|+.++++++.++..++....
T Consensus 117 ~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 194 (350)
T TIGR01836 117 YINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVD 194 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHH
Confidence 11345778888888765 34689999999999999999999999999999888765532100
Q ss_pred ------ccc--------------ccccc------CCCC----------------CCc---------cchhcCC-------
Q 004067 680 ------TFY--------------TEKYM------GLPS----------------EDP---------VGYEYSS------- 701 (776)
Q Consensus 680 ------~~~--------------~~~~~------~~~~----------------~~~---------~~~~~~~------- 701 (776)
..+ ...+. ..+. ... ..+....
T Consensus 195 ~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~ 274 (350)
T TIGR01836 195 TMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVE 274 (350)
T ss_pred hcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeE
Confidence 000 00000 0000 000 0000000
Q ss_pred ---hhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHh
Q 004067 702 ---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 702 ---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~ 775 (776)
....+.++++|+|+++|++|.++++..+..+++.+. +.+.++++++ +||.. ......++++..+.+||.++
T Consensus 275 ~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~--~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 275 IGGRKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVS--SEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred ECCEEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcC--CCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 011255678999999999999999999988888763 2457888887 57764 23334688999999999864
No 120
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.55 E-value=1.2e-12 Score=131.53 Aligned_cols=227 Identities=17% Similarity=0.112 Sum_probs=152.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHH-HhCCcEEEEECCCCCCCCchhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTARRGLKFEASIK 611 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rg~g~~~~~~~~~~~ 611 (776)
....+..++|.|.... ...+.|+|||+|||+.... ...+ ..++.+...+ .+.+..|+++|||-..+..
T Consensus 70 ~~~~l~vRly~P~~~~-~~~~~p~lvyfHGGGf~~~-S~~~-~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~-------- 138 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSS-SETKLPVLVYFHGGGFCLG-SANS-PAYDSFCTRLAAELNCVVVSVDYRLAPEHP-------- 138 (336)
T ss_pred CCCCeEEEEEcCCCCC-cccCceEEEEEeCCccEeC-CCCC-chhHHHHHHHHHHcCeEEEecCcccCCCCC--------
Confidence 4455999999998753 2268899999999876543 1122 2334445555 5789999999999443221
Q ss_pred hccCCccHHHHHHHHHHHHHc----CCCCCCcEEEEeechHHHHHHHHHhhC------CCceEEEEEcCCCCCccccccc
Q 004067 612 HNCGRIDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 612 ~~~~~~~~~D~~~~i~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~------~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
....++|..+++.|+.++ .++|.+||+|+|-|.||.+|..++.+. +-.+++.|++.|+.........
T Consensus 139 ---~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~ 215 (336)
T KOG1515|consen 139 ---FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTES 215 (336)
T ss_pred ---CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCH
Confidence 123488999999999885 568999999999999999999988652 3467999999998653211000
Q ss_pred -cc---------------ccc-cCCCCCC-ccchhcCChhh-----hh-ccCCCcEEEEecCCCCccChHHHHHHHHHHH
Q 004067 682 -YT---------------EKY-MGLPSED-PVGYEYSSVMH-----HV-HKMKGKLLLVHGMIDENVHFRHTARLINALV 737 (776)
Q Consensus 682 -~~---------------~~~-~~~~~~~-~~~~~~~~~~~-----~~-~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 737 (776)
+. ..+ +-.|... ...-...++.. .. ...-.|+|++.++.|... .+...++++|+
T Consensus 216 e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lk 293 (336)
T KOG1515|consen 216 EKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLK 293 (336)
T ss_pred HHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHHH
Confidence 00 000 0111110 00000111111 11 122257999999999776 57899999999
Q ss_pred HCCCCeEEEEecCCCCCCC--CC--CcHHHHHHHHHHHHHHh
Q 004067 738 AARKPYEILIFPDERHMPR--RH--RDRIYMEERIWEFIERT 775 (776)
Q Consensus 738 ~~~~~~~~~~~~~~~H~~~--~~--~~~~~~~~~~~~fl~~~ 775 (776)
+.|.++++..++++.|.+. .+ ....+..+.+.+|+.+.
T Consensus 294 k~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 294 KAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 9999999999999999862 22 35778889999998764
No 121
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.55 E-value=3.6e-11 Score=120.84 Aligned_cols=325 Identities=14% Similarity=0.091 Sum_probs=191.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+++||||+++|-.+.+ .+++++|-.+|+..-.....+ .+..++.+.+|||
T Consensus 193 V~~VRysPDG~~Fat~gsD-----gki~iyDGktge~vg~l~~~~--------------------aHkGsIfalsWsP-- 245 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSD-----GKIYIYDGKTGEKVGELEDSD--------------------AHKGSIFALSWSP-- 245 (603)
T ss_pred eeeEEECCCCCeEEEecCC-----ccEEEEcCCCccEEEEecCCC--------------------CccccEEEEEECC--
Confidence 5789999999999977653 369999999888654443211 1235899999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCC--CCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSC--SPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
|+++++.. .+..+.+||+++.+....+..+.. ......-|. .+..|.....+.|-.+++..+...++..+...
T Consensus 246 -Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-- 321 (603)
T KOG0318|consen 246 -DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-- 321 (603)
T ss_pred -CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheeccccc--
Confidence 99999976 778899999999987755544332 123345565 33333334456777778877775444333321
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
-+.++..+||++.|+..+.+ ..|--|+..
T Consensus 322 ---------------~ITaLtv~~d~~~i~SgsyD------------------------------------G~I~~W~~~ 350 (603)
T KOG0318|consen 322 ---------------SITALTVSPDGKTIYSGSYD------------------------------------GHINSWDSG 350 (603)
T ss_pred ---------------ceeEEEEcCCCCEEEeeccC------------------------------------ceEEEEecC
Confidence 15578899999988876654 457788888
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 373 (776)
+|..-++.- ..+...+..+.-+..+. ++... -+..|.+.++..+....- ... . +...+
T Consensus 351 ~g~~~~~~g-------~~h~nqI~~~~~~~~~~-~~t~g----~Dd~l~~~~~~~~~~t~~---~~~---~----lg~QP 408 (603)
T KOG0318|consen 351 SGTSDRLAG-------KGHTNQIKGMAASESGE-LFTIG----WDDTLRVISLKDNGYTKS---EVV---K----LGSQP 408 (603)
T ss_pred Ccccccccc-------ccccceEEEEeecCCCc-EEEEe----cCCeEEEEecccCccccc---cee---e----cCCCc
Confidence 887665522 34555666666666554 33332 233577776654332110 000 0 00111
Q ss_pred CCccccCC-eEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCC
Q 004067 374 KGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 374 ~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
.+++...+ .++..+-.. +|.++.-.+ +...+.- .+... ..+++|+++.+++-..+ + .+|||.+.- +.
T Consensus 409 ~~lav~~d~~~avv~~~~---~iv~l~~~~-~~~~~~~-~y~~s-~vAv~~~~~~vaVGG~D-g--kvhvysl~g---~~ 476 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACIS---DIVLLQDQT-KVSSIPI-GYESS-AVAVSPDGSEVAVGGQD-G--KVHVYSLSG---DE 476 (603)
T ss_pred eeEEEcCCCCEEEEEecC---cEEEEecCC-cceeecc-ccccc-eEEEcCCCCEEEEeccc-c--eEEEEEecC---Cc
Confidence 11122222 222222222 344443212 1222221 22223 34589999976655433 2 388888872 22
Q ss_pred CccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 453 HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 453 ~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
...+.+.+.....+..+++||||++||..-.+ .++.++|..+.+.
T Consensus 477 -l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~----rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 477 -LKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS----RKVVLYDVASREV 521 (603)
T ss_pred -ccceeeeecccCCceEEEECCCCcEEEEeccC----CcEEEEEcccCce
Confidence 11233444444456778999999999876433 4688889877653
No 122
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.54 E-value=7.4e-13 Score=133.58 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=124.9
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|.|||+||..++.. .|..++..|.+.||.|+++|+||+|.+..... ....+++....+..+++.
T Consensus 17 ~~p~vvliHG~~~~~~-------~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~-------~~~~~~~~~~~l~~~i~~ 82 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-------CWYKIRCLMENSGYKVTCIDLKSAGIDQSDAD-------SVTTFDEYNKPLIDFLSS 82 (273)
T ss_pred CCCeEEEECCCCCCcC-------cHHHHHHHHHhCCCEEEEecccCCCCCCCCcc-------cCCCHHHHHHHHHHHHHh
Confidence 4589999999765533 35556778888899999999999997632110 112344544444444433
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc------cccccc------c----ccc-C-------
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------YDTFYT------E----KYM-G------- 688 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~------~~~~~~------~----~~~-~------- 688 (776)
.. ..+++.++||||||.+++.++.++|++++++|..++...... +...+. . .+. .
T Consensus 83 l~-~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (273)
T PLN02211 83 LP-ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTS 161 (273)
T ss_pred cC-CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCce
Confidence 21 236899999999999999999999999999998866422000 000000 0 000 0
Q ss_pred ---------------CCCCCcc---chhc---CChh------hhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 689 ---------------LPSEDPV---GYEY---SSVM------HHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 689 ---------------~~~~~~~---~~~~---~~~~------~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
.+..... .... ...+ ....++ +.|+++|.|++|..+|++..+.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~---- 237 (273)
T PLN02211 162 AIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRW---- 237 (273)
T ss_pred eeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhC----
Confidence 0000000 0000 0000 112234 579999999999999998888887765
Q ss_pred CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 741 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
...+++.++ +||.. +.+.++++...+.++..
T Consensus 238 ~~~~~~~l~-~gH~p-~ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 238 PPSQVYELE-SDHSP-FFSTPFLLFGLLIKAAA 268 (273)
T ss_pred CccEEEEEC-CCCCc-cccCHHHHHHHHHHHHH
Confidence 233777886 79987 66778888777776654
No 123
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.54 E-value=3.7e-12 Score=137.95 Aligned_cols=281 Identities=14% Similarity=0.146 Sum_probs=184.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+....|||||+.++..+.. ..+.+|+..+++. +.+. .+..++....|+
T Consensus 162 v~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~l~------------------------~h~~~v~~~~fs 212 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLRELS------------------------GHTRGVSDVAFS 212 (456)
T ss_pred eEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhcccc------------------------ccccceeeeEEC
Confidence 4678999999999877553 3588888866652 2221 123579999999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeC-CCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDL-SCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~-~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
| ||+.|+-. .+..|++||+ +.+.....+..+. ..+....|+|+|+.|+..+. +.+.+|++.+|+.........
T Consensus 213 ~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~-~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 213 P---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS-TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred C---CCcEEEEecCCceEEEeeccCCCeEEEEecCCC-CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 9 99988865 6788999999 4545543555444 45889999999977777664 469999999987765544332
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
. .+..+++++||..|+-.+.+ ..|.+|
T Consensus 289 ~-----------------~is~~~f~~d~~~l~s~s~d------------------------------------~~i~vw 315 (456)
T KOG0266|consen 289 D-----------------GISGLAFSPDGNLLVSASYD------------------------------------GTIRVW 315 (456)
T ss_pred C-----------------ceEEEEECCCCCEEEEcCCC------------------------------------ccEEEE
Confidence 1 15578899999998876532 458999
Q ss_pred EcCCCceE---EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCceeecc
Q 004067 291 SAAGGPVS---WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSWVNLH 366 (776)
Q Consensus 291 d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~ 366 (776)
|+.++... .+.-. .... .+..+.|||+|++++... .+..+.+||+..+...... .+.... .
T Consensus 316 d~~~~~~~~~~~~~~~------~~~~-~~~~~~fsp~~~~ll~~~----~d~~~~~w~l~~~~~~~~~~~~~~~~----~ 380 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGA------ENSA-PVTSVQFSPNGKYLLSAS----LDRTLKLWDLRSGKSVGTYTGHSNLV----R 380 (456)
T ss_pred ECCCCceeeeecccCC------CCCC-ceeEEEECCCCcEEEEec----CCCeEEEEEccCCcceeeecccCCcc----e
Confidence 99999843 22110 1122 578999999999887765 5667999999877654433 333221 1
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccC-CeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~-~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
..|++.. ..++.++++...++ .|+.|++.++.. ..+..+ ...+.. ..+++....+...+.. ......+|.
T Consensus 381 ~~~~~~~----~~~~~~i~sg~~d~--~v~~~~~~s~~~~~~l~~h~~~~~~~-~~~~~~~~~~~s~s~~-~d~~~~~w~ 452 (456)
T KOG0266|consen 381 CIFSPTL----STGGKLIYSGSEDG--SVYVWDSSSGGILQRLEGHSKAAVSD-LSSHPTENLIASSSFE-GDGLIRLWK 452 (456)
T ss_pred eEecccc----cCCCCeEEEEeCCc--eEEEEeCCccchhhhhcCCCCCceec-cccCCCcCeeeecCcC-CCceEEEec
Confidence 1122211 12445666666777 899999886654 445544 333333 3488887755554432 223466665
Q ss_pred EE
Q 004067 445 AK 446 (776)
Q Consensus 445 ~~ 446 (776)
.+
T Consensus 453 ~~ 454 (456)
T KOG0266|consen 453 YD 454 (456)
T ss_pred CC
Confidence 44
No 124
>COG0400 Predicted esterase [General function prediction only]
Probab=99.53 E-value=2.9e-13 Score=126.54 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchh
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 698 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (776)
.+.+.++++.+.++..++.++++++|+|.|+.+++.++.++|..++++++.+|...+..-
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~-------------------- 139 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE-------------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc--------------------
Confidence 445666777777777789999999999999999999999999999999999987532100
Q ss_pred cCChhhhhc-cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 699 YSSVMHHVH-KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 699 ~~~~~~~~~-~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
... .-..|+|++||..|++||...+.++.+.|++.|.+++...++ .||.+ ..+..+.+.+|+.+.
T Consensus 140 ------~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i-----~~e~~~~~~~wl~~~ 205 (207)
T COG0400 140 ------LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEI-----PPEELEAARSWLANT 205 (207)
T ss_pred ------cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcC-----CHHHHHHHHHHHHhc
Confidence 011 123799999999999999999999999999999999999999 79987 334567788898765
No 125
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.51 E-value=6.5e-13 Score=139.09 Aligned_cols=235 Identities=14% Similarity=0.113 Sum_probs=152.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccc---------ccccccchhhhHHHHhCCcEEEEECCCCCCCC--
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC---------DSWINTVDMRAQYLRSKGILVWKLDNRGTARR-- 602 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~---------~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~-- 602 (776)
..+|.+..|...+. .+-++||++|+..++.... ..|...+-.--..+....|-|+++|..|.+.+
T Consensus 40 ~~~~~Y~t~G~ln~----~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~ 115 (389)
T PRK06765 40 DVQMGYETYGTLNR----AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKD 115 (389)
T ss_pred CceEEEEeccccCC----CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCC
Confidence 35678888876553 3558999999977654322 22321111112345567899999999987642
Q ss_pred ------chhhhhhh-----hhccCCccHHHHHHHHHHHHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCceEEEEEcC
Q 004067 603 ------GLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGA 670 (776)
Q Consensus 603 ------~~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~~~~v~~~ 670 (776)
|....+.. ........+.|+.+++..++++..+ .++. ++||||||++++.++.++|++++.+|+++
T Consensus 116 p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia 193 (389)
T PRK06765 116 PNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVI 193 (389)
T ss_pred CCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEe
Confidence 21111110 0123446788999988888876543 5775 99999999999999999999999988875
Q ss_pred CCCC---cc--c----------ccc-----c---------------------------ccccccCC------CC------
Q 004067 671 PVTS---WD--G----------YDT-----F---------------------------YTEKYMGL------PS------ 691 (776)
Q Consensus 671 ~~~~---~~--~----------~~~-----~---------------------------~~~~~~~~------~~------ 691 (776)
.... +. . .+. . +.+++... +.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~ 273 (389)
T PRK06765 194 GNPQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTL 273 (389)
T ss_pred cCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccch
Confidence 4321 10 0 000 0 00000000 00
Q ss_pred CCccchhc------------------------C-------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 692 EDPVGYEY------------------------S-------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 692 ~~~~~~~~------------------------~-------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
...+.|.. . +....+.++++|+|+|+|..|.++|+..++++.+.+...+
T Consensus 274 ~~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~ 353 (389)
T PRK06765 274 TSFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQG 353 (389)
T ss_pred hhHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcC
Confidence 00001100 0 2233466789999999999999999999999988887666
Q ss_pred CCeEEEEecC-CCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 KPYEILIFPD-ERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 ~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+++++++++ +||.. ..+..+.+...+.+||++.
T Consensus 354 ~~a~l~~I~s~~GH~~-~le~p~~~~~~I~~FL~~~ 388 (389)
T PRK06765 354 KYAEVYEIESINGHMA-GVFDIHLFEKKIYEFLNRK 388 (389)
T ss_pred CCeEEEEECCCCCcch-hhcCHHHHHHHHHHHHccc
Confidence 6789999985 89976 6678889999999999753
No 126
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.50 E-value=1.7e-13 Score=128.24 Aligned_cols=187 Identities=18% Similarity=0.116 Sum_probs=123.1
Q ss_pred EEEEEc-CCCcEEEEEEEcCCCCCCCCCCc-eEEEEEcCCCCccccccc-ccccchhhhHHHHhCCcEEEEECCCC-CCC
Q 004067 526 IVQIQA-NDGTVLYGALYKPDESRYGPPPY-KTLISVYGGPCVQLVCDS-WINTVDMRAQYLRSKGILVWKLDNRG-TAR 601 (776)
Q Consensus 526 ~~~~~~-~dg~~l~~~~~~P~~~~~~~~~~-p~vl~~HG~~~~~~~~~~-~~~~~~~~~~~l~~~G~~v~~~d~rg-~g~ 601 (776)
.++|.. .-|.++.+.+|.|+...++ +++ |+|||+||++........ -.......+-..-+.++-|++|.|-- +..
T Consensus 162 a~~f~d~~tgneLkYrly~Pkdy~pd-kky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d 240 (387)
T COG4099 162 AVEFYDESTGNELKYRLYTPKDYAPD-KKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFAD 240 (387)
T ss_pred heEeeccccCceeeEEEecccccCCC-CccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccccccc
Confidence 344433 3578899999999887444 566 999999996544321100 00000001111123345566665421 111
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHH-HHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 680 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~ 680 (776)
+.. -........+..+. .+.+++.||.+||.++|.|+||+.++.++.++|+.|.++++++|--+-
T Consensus 241 ~e~---------~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~----- 306 (387)
T COG4099 241 SEE---------KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR----- 306 (387)
T ss_pred ccc---------ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-----
Confidence 110 00111334455555 666778899999999999999999999999999999999998875321
Q ss_pred cccccccCCCCCCccchhcCChhhhhccC-CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEec
Q 004067 681 FYTEKYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 749 (776)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 749 (776)
...+..+ +.|+.++|+.+|.++|.+++.-+++.++..+.++.+..|.
T Consensus 307 ----------------------v~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 ----------------------VYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ----------------------hhhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 1223333 3799999999999999999999999998888777776665
No 127
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.49 E-value=1.2e-10 Score=112.10 Aligned_cols=312 Identities=13% Similarity=0.077 Sum_probs=200.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+-.++.+|+..++| .|.+...-|+|++.+|+. -.++.|++ .+....||.
T Consensus 67 vFavsl~P~~~l~a-----TGGgDD~AflW~~~~ge~~~eltgHKD------------------------SVt~~~Fsh- 116 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVA-----TGGGDDLAFLWDISTGEFAGELTGHKD------------------------SVTCCSFSH- 116 (399)
T ss_pred eEEEEeCCCCceEE-----ecCCCceEEEEEccCCcceeEecCCCC------------------------ceEEEEEcc-
Confidence 35778999888777 344456789999988874 56776655 788999999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
||.+||.. .+++|.++..+++..+..+. .+...+..+.|.|-+..|++-+. +.+|.|.+..+...++..+... .
T Consensus 117 --dgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-~ 192 (399)
T KOG0296|consen 117 --DGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-P 192 (399)
T ss_pred --CceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-C
Confidence 99999987 67899999999998874554 23335888999999988888764 6899999998665566554321 1
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
-. .=.|.||||+|+....+ ..|.+|+++
T Consensus 193 ct----------------~G~f~pdGKr~~tgy~d------------------------------------gti~~Wn~k 220 (399)
T KOG0296|consen 193 CT----------------CGEFIPDGKRILTGYDD------------------------------------GTIIVWNPK 220 (399)
T ss_pred cc----------------cccccCCCceEEEEecC------------------------------------ceEEEEecC
Confidence 11 12388999999876643 458999999
Q ss_pred CCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec----ccc
Q 004067 294 GGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL----HDC 368 (776)
Q Consensus 294 ~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~----~~~ 368 (776)
++.+.- +... .......+.++.+|..++-. + .....+.++..+|+.........+..... ...
T Consensus 221 tg~p~~~~~~~--------e~~~~~~~~~~~~~~~~~~g-~---~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 221 TGQPLHKITQA--------EGLELPCISLNLAGSTLTKG-N---SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred CCceeEEeccc--------ccCcCCccccccccceeEec-c---CCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 997543 3211 12223345667777544333 2 33446677777777665554321100000 000
Q ss_pred cccCCCCccccCC-eEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 369 FTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 369 ~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.... .+... .+.....-+| .|.+||+.....|.+-.+...|.... |-+ ..+ ++++..++. +.+|....
T Consensus 289 ve~~----~~ss~lpL~A~G~vdG--~i~iyD~a~~~~R~~c~he~~V~~l~-w~~-t~~-l~t~c~~g~--v~~wDaRt 357 (399)
T KOG0296|consen 289 VESI----PSSSKLPLAACGSVDG--TIAIYDLAASTLRHICEHEDGVTKLK-WLN-TDY-LLTACANGK--VRQWDART 357 (399)
T ss_pred hhhc----ccccccchhhcccccc--eEEEEecccchhheeccCCCceEEEE-EcC-cch-heeeccCce--EEeeeccc
Confidence 0000 00011 1333334466 99999999988888888877788776 544 343 555555542 56666653
Q ss_pred CCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEee
Q 004067 448 YPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 448 ~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~ 484 (776)
|. .....+.+. ++..++++||++.++.++.
T Consensus 358 ---G~----l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 358 ---GQ----LKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ---cc----eEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 43 445555554 5778899999987776643
No 128
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.48 E-value=1.1e-13 Score=134.86 Aligned_cols=178 Identities=22% Similarity=0.180 Sum_probs=117.7
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc---
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ--- 632 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--- 632 (776)
||++|||+........ ...++..++ +.|+.|+.+|||-..... ....++|+.++++|+.++
T Consensus 1 v~~~HGGg~~~g~~~~----~~~~~~~la~~~g~~v~~~~Yrl~p~~~-----------~p~~~~D~~~a~~~l~~~~~~ 65 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES----HWPFAARLAAERGFVVVSIDYRLAPEAP-----------FPAALEDVKAAYRWLLKNADK 65 (211)
T ss_dssp EEEE--STTTSCGTTT----HHHHHHHHHHHHTSEEEEEE---TTTSS-----------TTHHHHHHHHHHHHHHHTHHH
T ss_pred CEEECCcccccCChHH----HHHHHHHHHhhccEEEEEeecccccccc-----------ccccccccccceeeecccccc
Confidence 7899998776442221 123355555 489999999999543221 123488999999999987
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCC----CceEEEEEcCCCCCc-ccccccc------c--------------cccc
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVSGAPVTSW-DGYDTFY------T--------------EKYM 687 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~----~~~~~~v~~~~~~~~-~~~~~~~------~--------------~~~~ 687 (776)
..+|.++|+|+|+|.||.+++.++.+.. ..++++++.+|..++ ......+ . +.+.
T Consensus 66 ~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 66 LGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp HTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccc
Confidence 3468999999999999999999997532 247999999998766 2111100 0 0011
Q ss_pred CCCCCCccchhcCChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+ .........+|+.. ..+ -+|+++++|+.|..+ .++..++++|++.|++++++++++..|.+
T Consensus 146 ~---~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 146 P---GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp S---TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred c---cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 1 00001112344433 123 259999999999865 57899999999999999999999999976
No 129
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-10 Score=108.35 Aligned_cols=268 Identities=16% Similarity=0.101 Sum_probs=171.6
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCCC-----CccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEec
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSC-----SKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNL 197 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~-----~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l 197 (776)
-+...+..+ ++..+++. .+..+.+|++.. |.+++.++.+.. .+.....|+||+..+-.+ +..+.+||+
T Consensus 17 ~Vt~la~~~---~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 17 WVTALAIKI---KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred eEEEEEeec---CCCceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEccCCceEEeccccceEEEEEe
Confidence 355566666 66666665 455677777654 444435655443 488899999999755544 456999999
Q ss_pred CCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
++|+.++.......+ +..+++|||.++|+..+.|
T Consensus 93 ~~g~~t~~f~GH~~d-----------------Vlsva~s~dn~qivSGSrD----------------------------- 126 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKD-----------------VLSVAFSTDNRQIVSGSRD----------------------------- 126 (315)
T ss_pred cCCcEEEEEEecCCc-----------------eEEEEecCCCceeecCCCc-----------------------------
Confidence 999877765544321 5578899999999987654
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe--EEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
..|.+|+..++...++.-. .+...+..+.|||... +|+..+ .+..+.+||+++-+.+.-.
T Consensus 127 -------kTiklwnt~g~ck~t~~~~-------~~~~WVscvrfsP~~~~p~Ivs~s----~DktvKvWnl~~~~l~~~~ 188 (315)
T KOG0279|consen 127 -------KTIKLWNTLGVCKYTIHED-------SHREWVSCVRFSPNESNPIIVSAS----WDKTVKVWNLRNCQLRTTF 188 (315)
T ss_pred -------ceeeeeeecccEEEEEecC-------CCcCcEEEEEEcCCCCCcEEEEcc----CCceEEEEccCCcchhhcc
Confidence 3589999999888777431 2267899999999853 555554 5667999999886654433
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
-.... +. ..-.++| ++.+.....++| .+++||++.++.-.-..+...+.+. .|+|+ ++.+..++..
T Consensus 189 ~gh~~-~v-~t~~vSp--------DGslcasGgkdg--~~~LwdL~~~k~lysl~a~~~v~sl-~fspn-rywL~~at~~ 254 (315)
T KOG0279|consen 189 IGHSG-YV-NTVTVSP--------DGSLCASGGKDG--EAMLWDLNEGKNLYSLEAFDIVNSL-CFSPN-RYWLCAATAT 254 (315)
T ss_pred ccccc-cE-EEEEECC--------CCCEEecCCCCc--eEEEEEccCCceeEeccCCCeEeeE-EecCC-ceeEeeccCC
Confidence 22211 11 1112333 445666666777 8999998876653333333445554 49997 4455555554
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCC--------CC--eEEEEEcCCcCEEEEEeeC
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNG--------KG--KHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~--------~~--~~~~~~spdg~~l~~~~~~ 485 (776)
+ +.||.+.. +. .+..|... .. ....+||+||..|.-.++.
T Consensus 255 s---IkIwdl~~---~~----~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 255 S---IKIWDLES---KA----VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred c---eEEEeccc---hh----hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 3 78887763 11 12222110 01 2356999999998877654
No 130
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.47 E-value=5.4e-10 Score=112.52 Aligned_cols=288 Identities=14% Similarity=0.151 Sum_probs=169.8
Q ss_pred EcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceE
Q 004067 62 FSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKI 141 (776)
Q Consensus 62 ~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~ 141 (776)
=.|-|..|.|... ..+++.+++..+...+.. ++...+.-..+|| .|.+
T Consensus 26 ~dpkgd~ilY~nG------ksv~ir~i~~~~~~~iYt-----------------------EH~~~vtVAkySP---sG~y 73 (603)
T KOG0318|consen 26 GDPKGDNILYTNG------KSVIIRNIDNPASVDIYT-----------------------EHAHQVTVAKYSP---SGFY 73 (603)
T ss_pred cCCCCCeEEEeCC------CEEEEEECCCccceeeec-----------------------cccceeEEEEeCC---CceE
Confidence 3788999999743 469999999877644443 2234566778999 9999
Q ss_pred EEEe-CCCcEEEEeCCCCccce--ecCCCCCCCccCceeCCCCCEEEEEECC-----cEEEEecCC------CceeEEee
Q 004067 142 IMVP-LPDGIYFQDLSCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRDC-----ELHVLNLLI------NEQRQLTH 207 (776)
Q Consensus 142 l~~~-~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~~-----~l~~~~l~~------g~~~~lt~ 207 (776)
++.. ..++|.+||....+..+ .+... .+++..++|++|+++|+.+.++ .+|.||--+ |..+++..
T Consensus 74 iASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins 152 (603)
T KOG0318|consen 74 IASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINS 152 (603)
T ss_pred EeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEee
Confidence 9887 56889999987755432 12222 2358899999999999999874 467776432 22222211
Q ss_pred -------------CCCCC--ceecCCcccce----ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 208 -------------GANGN--TVTHGLAEYIA----QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 208 -------------~~~~~--~~~~~~~~~~~----~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
.++.. .++.|.| |.. +++-.-+..++|||||++.+....|
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-------------------- 211 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-------------------- 211 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCCCeEEEecCC--------------------
Confidence 10000 1111111 110 1111123445555555555544322
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
..+++||=++|+..- +.-. ..+.+.++.++||||++.++.++ .+..+.+||..
T Consensus 212 ----------------gki~iyDGktge~vg~l~~~------~aHkGsIfalsWsPDs~~~~T~S----aDkt~KIWdVs 265 (603)
T KOG0318|consen 212 ----------------GKIYIYDGKTGEKVGELEDS------DAHKGSIFALSWSPDSTQFLTVS----ADKTIKIWDVS 265 (603)
T ss_pred ----------------ccEEEEcCCCccEEEEecCC------CCccccEEEEEECCCCceEEEec----CCceEEEEEee
Confidence 458999999887544 3222 56888999999999999888776 56678999998
Q ss_pred CCceEE-EEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCC
Q 004067 348 TGQRKV-ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEAS 425 (776)
Q Consensus 348 ~g~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg 425 (776)
++.+.. +.-... ++. ... +.-|..+.++-+ .-+| .|-.++++.. .+..+..+...+..+. .++||
T Consensus 266 ~~slv~t~~~~~~---v~d-qqv-----G~lWqkd~lItV-Sl~G--~in~ln~~d~~~~~~i~GHnK~ITaLt-v~~d~ 332 (603)
T KOG0318|consen 266 TNSLVSTWPMGST---VED-QQV-----GCLWQKDHLITV-SLSG--TINYLNPSDPSVLKVISGHNKSITALT-VSPDG 332 (603)
T ss_pred ccceEEEeecCCc---hhc-eEE-----EEEEeCCeEEEE-EcCc--EEEEecccCCChhheecccccceeEEE-EcCCC
Confidence 876432 221111 000 000 012222333333 3456 5555565444 3455666666666654 89999
Q ss_pred cEEEEEEccCCCceeeEEEEEe
Q 004067 426 GQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 426 ~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
++ +|+++.++ +|-..+.
T Consensus 333 ~~-i~SgsyDG----~I~~W~~ 349 (603)
T KOG0318|consen 333 KT-IYSGSYDG----HINSWDS 349 (603)
T ss_pred CE-EEeeccCc----eEEEEec
Confidence 86 45555554 4544544
No 131
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=1.2e-09 Score=114.77 Aligned_cols=234 Identities=9% Similarity=0.060 Sum_probs=142.2
Q ss_pred cceecCCCCCCCCC----eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 270 QEDHAYPFAGASNV----KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 270 ~~~~~~~~~g~~~~----~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
...+.|+.+|.... ...+.+||..+|-...- . ..+...+..+.|+.+|+.++..+ -++.+..||
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-F-------teHts~Vt~v~f~~~g~~llssS----LDGtVRAwD 420 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-F-------TEHTSGVTAVQFTARGNVLLSSS----LDGTVRAWD 420 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE-e-------ccCCCceEEEEEEecCCEEEEee----cCCeEEeee
Confidence 44445555443321 24589999988865432 1 46777889999999999777665 456789999
Q ss_pred CCCCce-EEEEEeccCceeecccccccCCCCccccCC-eEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeec
Q 004067 346 IKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVN 422 (776)
Q Consensus 346 ~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s 422 (776)
+....- +..+...-..++.. +-|+. .++++...+ .-.|++|+..+|+.-. |..++..|..+. |+
T Consensus 421 lkRYrNfRTft~P~p~Qfscv-----------avD~sGelV~AG~~d-~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~ 487 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCV-----------AVDPSGELVCAGAQD-SFEIFVWSVQTGQLLDILSGHEGPVSGLS-FS 487 (893)
T ss_pred ecccceeeeecCCCceeeeEE-----------EEcCCCCEEEeeccc-eEEEEEEEeecCeeeehhcCCCCcceeeE-Ec
Confidence 987654 44443222122221 22333 355544443 3589999999887655 555566666654 99
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
++|. ++++++++.+ +.+|.+=-. .| ....|.-...+..++|+|||+.|+..... ++|-.+|...+.+
T Consensus 488 ~~~~-~LaS~SWDkT--VRiW~if~s-~~-----~vEtl~i~sdvl~vsfrPdG~elaVaTld----gqItf~d~~~~~q 554 (893)
T KOG0291|consen 488 PDGS-LLASGSWDKT--VRIWDIFSS-SG-----TVETLEIRSDVLAVSFRPDGKELAVATLD----GQITFFDIKEAVQ 554 (893)
T ss_pred cccC-eEEeccccce--EEEEEeecc-Cc-----eeeeEeeccceeEEEEcCCCCeEEEEEec----ceEEEEEhhhcee
Confidence 9998 5667777765 899988642 22 33444433346788999999999998765 5788899876654
Q ss_pred eEeeccCCCchhhhhccCCCCceEEEEEc-CCCcEEEEEEEcCCC
Q 004067 503 VLPLYEQPLTVPRIKRLQLEPPDIVQIQA-NDGTVLYGALYKPDE 546 (776)
Q Consensus 503 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~~l~~~~~~P~~ 546 (776)
+-.+.... .+..-.. ....++-+. ..+..+....|.+++
T Consensus 555 ~~~Idgrk----D~~~gR~-~~D~~ta~~sa~~K~Ftti~ySaDG 594 (893)
T KOG0291|consen 555 VGSIDGRK----DLSGGRK-ETDRITAENSAKGKTFTTICYSADG 594 (893)
T ss_pred eccccchh----hcccccc-ccceeehhhcccCCceEEEEEcCCC
Confidence 43332211 1111111 122223322 245666777776654
No 132
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.45 E-value=1.4e-10 Score=118.34 Aligned_cols=267 Identities=16% Similarity=0.156 Sum_probs=167.0
Q ss_pred cCCeeeEEEeecCCCceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCc
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINE 201 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~ 201 (776)
...+..+.|+| +++.|++.. ++.|++|++.+++....+.... ..+..+.|+|+++.++... ++.|+++++.+++
T Consensus 9 ~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 9 TGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCC-cceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 35788999999 999999874 8899999999876552443333 2356899999998888887 5689999999864
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.......... .+..+.|+|+++.++....+
T Consensus 85 ~~~~~~~~~~-----------------~i~~~~~~~~~~~~~~~~~~--------------------------------- 114 (289)
T cd00200 85 CVRTLTGHTS-----------------YVSSVAFSPDGRILSSSSRD--------------------------------- 114 (289)
T ss_pred ceEEEeccCC-----------------cEEEEEEcCCCCEEEEecCC---------------------------------
Confidence 3322221110 14468899997755543311
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc-C
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-D 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~ 360 (776)
..+.+||+.+++....- ..+...+..+.|+|+++.++... .+..|.+||+.+++......... .
T Consensus 115 ---~~i~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~ 179 (289)
T cd00200 115 ---KTIKVWDVETGKCLTTL--------RGHTDWVNSVAFSPDGTFVASSS----QDGTIKLWDLRTGKCVATLTGHTGE 179 (289)
T ss_pred ---CeEEEEECCCcEEEEEe--------ccCCCcEEEEEEcCcCCEEEEEc----CCCcEEEEEccccccceeEecCccc
Confidence 35789999866544331 23455788999999987666554 34569999998766544433221 1
Q ss_pred ceeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
... +.+.+++ .+++...+| .|.+|+...++. ..+..+...+... .|++++.. ++....++
T Consensus 180 i~~------------~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~-~~~~~~~~-- 241 (289)
T cd00200 180 VNS------------VAFSPDGEKLLSSSSDG--TIKLWDLSTGKCLGTLRGHENGVNSV-AFSPDGYL-LASGSEDG-- 241 (289)
T ss_pred cce------------EEECCCcCEEEEecCCC--cEEEEECCCCceecchhhcCCceEEE-EEcCCCcE-EEEEcCCC--
Confidence 110 1222332 344444455 789999876544 3443444445554 48998664 44444333
Q ss_pred eeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEee
Q 004067 439 ESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 439 ~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~ 484 (776)
.+.+|.+.. +. ....+.... .+..+.|+|+++.|+....
T Consensus 242 ~i~i~~~~~---~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 242 TIRVWDLRT---GE----CVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cEEEEEcCC---ce----eEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 266666652 22 344444333 4678899999987766543
No 133
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.45 E-value=1.5e-12 Score=125.02 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-cc---cccc------cc---cc
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-DG---YDTF------YT---EK 685 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~-~~---~~~~------~~---~~ 685 (776)
++-+..+++||.+++.++.++|+|+|.|.||-+|+.+|+.+| .++++|+.+|..-. .. +... +. ..
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 345789999999999999999999999999999999999998 57999988875321 10 0000 00 00
Q ss_pred c-cCCCCCCc--cch------hcCChhhhhccCCCcEEEEecCCCCccChH-HHHHHHHHHHHCCCC--eEEEEecCCCC
Q 004067 686 Y-MGLPSEDP--VGY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARKP--YEILIFPDERH 753 (776)
Q Consensus 686 ~-~~~~~~~~--~~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~--~~~~~~~~~~H 753 (776)
. ...+.... ..+ ......-.+.++++|+|++.|++|...|.. .+..+.++|++++.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0 00000000 000 011112246788999999999999999865 455677888888754 88999999999
Q ss_pred CCCCC---------------------------CcHHHHHHHHHHHHHHhC
Q 004067 754 MPRRH---------------------------RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 754 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l 776 (776)
.+..+ ...++.|..+++||+++|
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L 211 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHL 211 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 86321 135789999999999987
No 134
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.44 E-value=2.8e-12 Score=116.03 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=125.5
Q ss_pred hhhhHHHHhCCcEEEEECC-CCCCCCc--h--hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHH
Q 004067 578 DMRAQYLRSKGILVWKLDN-RGTARRG--L--KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 652 (776)
Q Consensus 578 ~~~~~~l~~~G~~v~~~d~-rg~g~~~--~--~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a 652 (776)
+..+..++.+||.|+.||+ ||-..+. + .........-...-..|+...+++|+.+. +..+|+++|++|||-++
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v 134 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV 134 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence 3457888899999999997 4411111 1 11111222222334778999999999776 56899999999999999
Q ss_pred HHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHH
Q 004067 653 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 653 ~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
..+....+ .|.+++...|..- + ...+.++++|+|++.|+.|..+|+.....+
T Consensus 135 v~~~~~~~-~f~a~v~~hps~~--------------------------d-~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ 186 (242)
T KOG3043|consen 135 VTLSAKDP-EFDAGVSFHPSFV--------------------------D-SADIANVKAPILFLFAELDEDVPPKDVKAW 186 (242)
T ss_pred EEeeccch-hheeeeEecCCcC--------------------------C-hhHHhcCCCCEEEEeecccccCCHHHHHHH
Confidence 88888877 6888888766421 1 245778889999999999999999998888
Q ss_pred HHHHHHCCC-CeEEEEecCCCCCCCC-------C---CcHHHHHHHHHHHHHHhC
Q 004067 733 INALVAARK-PYEILIFPDERHMPRR-------H---RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 733 ~~~l~~~~~-~~~~~~~~~~~H~~~~-------~---~~~~~~~~~~~~fl~~~l 776 (776)
-+.+.+... ..++.+|++.+|.+.. + ...++.+..+..||.++|
T Consensus 187 ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 187 EEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 888876543 3579999999999842 1 235788999999999875
No 135
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.44 E-value=2e-12 Score=115.49 Aligned_cols=212 Identities=15% Similarity=0.166 Sum_probs=138.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
..+.+.++.+.+..+-+...... ..-+++++||.-.... . .....++..+++.||.++-+|++|.|+|
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tg-------s~e~vvlcHGfrS~Kn---~--~~~~~vA~~~e~~gis~fRfDF~GnGeS 76 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETG-------STEIVVLCHGFRSHKN---A--IIMKNVAKALEKEGISAFRFDFSGNGES 76 (269)
T ss_pred eeeEEEeccCCCchhhcceeccC-------CceEEEEeeccccccc---h--HHHHHHHHHHHhcCceEEEEEecCCCCc
Confidence 44556666666655555444322 2358999999644322 0 1123357788999999999999999999
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccc--
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 680 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~-- 680 (776)
...|.-. .+..+++|+..+++++.... ..--+|+|||-||.+++.++.++++ +.-++..++-.+.+....
T Consensus 77 ~gsf~~G----n~~~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eR 148 (269)
T KOG4667|consen 77 EGSFYYG----NYNTEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINER 148 (269)
T ss_pred CCccccC----cccchHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhh
Confidence 7665422 23346789999999997642 1224699999999999999999888 566777777655433221
Q ss_pred ---ccccc-----ccCCCC---CCccch--------hcCChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHHC
Q 004067 681 ---FYTEK-----YMGLPS---EDPVGY--------EYSSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAA 739 (776)
Q Consensus 681 ---~~~~~-----~~~~~~---~~~~~~--------~~~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 739 (776)
.+.++ ++..+. .....+ ...+......+| ++|+|-+||..|.+||.+.+.++++.+.
T Consensus 149 lg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~-- 226 (269)
T KOG4667|consen 149 LGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIP-- 226 (269)
T ss_pred hcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhcc--
Confidence 11111 111111 001111 111222233445 4899999999999999999999999873
Q ss_pred CCCeEEEEecCCCCCCCCC
Q 004067 740 RKPYEILIFPDERHMPRRH 758 (776)
Q Consensus 740 ~~~~~~~~~~~~~H~~~~~ 758 (776)
..++.++||++|.+...
T Consensus 227 --nH~L~iIEgADHnyt~~ 243 (269)
T KOG4667|consen 227 --NHKLEIIEGADHNYTGH 243 (269)
T ss_pred --CCceEEecCCCcCccch
Confidence 36899999999998543
No 136
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.43 E-value=2.8e-12 Score=157.80 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=133.2
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
..|+|||+||.+++.. .|..++..|.+ +|.|+++|+||+|.+................++++...+..++++
T Consensus 1370 ~~~~vVllHG~~~s~~-------~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~ 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE-------DWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH 1441 (1655)
T ss_pred CCCeEEEECCCCCCHH-------HHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 3478999999877654 23444566654 699999999999987532110000001122355566555555544
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-------------cc--------cccccccCC--
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-------------DT--------FYTEKYMGL-- 689 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-------------~~--------~~~~~~~~~-- 689 (776)
. ..+++.++||||||.+++.++.++|++++++++.++...+... .. .+...+...
T Consensus 1442 l--~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 1519 (1655)
T PLN02980 1442 I--TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGEL 1519 (1655)
T ss_pred h--CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHH
Confidence 2 3468999999999999999999999999999887654321100 00 000000000
Q ss_pred ---CCC---------------Ccc----chh------cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC-
Q 004067 690 ---PSE---------------DPV----GYE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR- 740 (776)
Q Consensus 690 ---~~~---------------~~~----~~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~- 740 (776)
... ... .+. ..+....+.++++|+|+++|++|..++ ..+.++.+.+....
T Consensus 1520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~ 1598 (1655)
T PLN02980 1520 WKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKE 1598 (1655)
T ss_pred hhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccc
Confidence 000 000 000 011123467888999999999999774 55666666654320
Q ss_pred -------CCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 741 -------KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 741 -------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..++++++|++||.. +.++++.+.+.+.+||.+.
T Consensus 1599 ~~~~~~~~~a~lvvI~~aGH~~-~lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1599 SGNDKGKEIIEIVEIPNCGHAV-HLENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred ccccccccceEEEEECCCCCch-HHHCHHHHHHHHHHHHHhc
Confidence 136899999999987 6688899999999999763
No 137
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.43 E-value=8.7e-12 Score=121.94 Aligned_cols=265 Identities=12% Similarity=0.114 Sum_probs=182.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCC--CCEEEEEE-CCcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSD--GTMIAFVR-DCELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~la~~~-~~~l~~~~l~~g 200 (776)
.++....||. |++.|+.. ..|.+.+|+.........+.. ....+..+.|+|. +..||-.+ ++-+-+|++++.
T Consensus 176 rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 176 RPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred CcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 4567788999 99999976 678899999988876634444 3446889999997 55676665 455667776653
Q ss_pred c-eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 E-QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~-~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
. ..+|+.. ..|+..++|.|+|+.|+..+.|.+
T Consensus 252 ~~l~~l~gH------------------~~RVs~VafHPsG~~L~TasfD~t----------------------------- 284 (459)
T KOG0272|consen 252 TPLQDLEGH------------------LARVSRVAFHPSGKFLGTASFDST----------------------------- 284 (459)
T ss_pred cchhhhhcc------------------hhhheeeeecCCCceeeecccccc-----------------------------
Confidence 2 2223221 234678999999999999887643
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE- 358 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~- 358 (776)
-.+||+.+++.-.+. .++...+.+++|-|||..++... -+.-=.+||+.+|....+....
T Consensus 285 -------WRlWD~~tk~ElL~Q--------EGHs~~v~~iaf~~DGSL~~tGG----lD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 285 -------WRLWDLETKSELLLQ--------EGHSKGVFSIAFQPDGSLAATGG----LDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred -------hhhcccccchhhHhh--------cccccccceeEecCCCceeeccC----ccchhheeecccCcEEEEecccc
Confidence 378999988765442 46777899999999998655433 3333467999999987766543
Q ss_pred cCceeecccccccCCCCccccCCeE-EEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGF-IWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
.+.+.. +|+++++ +.+...++ ...+||+.... ..++..+...|..+- ++|++...+++++.++
T Consensus 346 k~I~~V------------~fsPNGy~lATgs~Dn--t~kVWDLR~r~~ly~ipAH~nlVS~Vk-~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 346 KEILSV------------AFSPNGYHLATGSSDN--TCKVWDLRMRSELYTIPAHSNLVSQVK-YSPQEGYFLVTASYDN 410 (459)
T ss_pred cceeeE------------eECCCceEEeecCCCC--cEEEeeecccccceecccccchhhheE-ecccCCeEEEEcccCc
Confidence 333322 3444444 33333444 88888987654 455555555555554 9997777888888887
Q ss_pred CceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEe
Q 004067 437 PLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFH 483 (776)
Q Consensus 437 ~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~ 483 (776)
. ..||.-. ++. .++.|..+.+ +.++..|+|+..++...
T Consensus 411 t--~kiWs~~---~~~----~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 411 T--VKIWSTR---TWS----PLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred c--eeeecCC---Ccc----cchhhcCCccceEEEEeccCCceEEEec
Confidence 6 7888766 443 5667777665 67899999998877654
No 138
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.43 E-value=1.7e-10 Score=107.71 Aligned_cols=276 Identities=15% Similarity=0.137 Sum_probs=185.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+....||+|+++|+-.+.+ ..|.+||.-+.+.......+ ..=+-.-+|+|
T Consensus 58 i~~~~ws~Dsr~ivSaSqD-----GklIvWDs~TtnK~haipl~-----------------------s~WVMtCA~sP-- 107 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQD-----GKLIVWDSFTTNKVHAIPLP-----------------------SSWVMTCAYSP-- 107 (343)
T ss_pred eeeeEecCCcCeEEeeccC-----CeEEEEEcccccceeEEecC-----------------------ceeEEEEEECC--
Confidence 6789999999999966553 35999999887654443211 11255678999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccc------eecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPE------LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~------~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~ 209 (776)
.|+.++-. .++..-++++.+.+.. +.|..+. ..+..-.|-+|++.|--..+...-+||+++|+..+...+.
T Consensus 108 -Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 108 -SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred -CCCeEEecCcCceeEEEecccccccccceeeeeecCcc-ceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC
Confidence 99999987 5666566677654211 1343333 3477788988887665555566899999999988776544
Q ss_pred CCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
.++ +.++..+| |++..+...-| ...+
T Consensus 186 ~gD-----------------V~slsl~p~~~ntFvSg~cD------------------------------------~~ak 212 (343)
T KOG0286|consen 186 TGD-----------------VMSLSLSPSDGNTFVSGGCD------------------------------------KSAK 212 (343)
T ss_pred ccc-----------------EEEEecCCCCCCeEEecccc------------------------------------ccee
Confidence 321 45788999 88876654433 2358
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccc
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDC 368 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 368 (776)
+||+..+..++. +.+++..|..+.|-|+|.-++..+ ++....+||+.....-.++++.....-...-.
T Consensus 213 lWD~R~~~c~qt--------F~ghesDINsv~ffP~G~afatGS----DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 213 LWDVRSGQCVQT--------FEGHESDINSVRFFPSGDAFATGS----DDATCRLYDLRADQELAVYSHDSIICGITSVA 280 (343)
T ss_pred eeeccCcceeEe--------ecccccccceEEEccCCCeeeecC----CCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence 999998876665 267888899999999997554443 67778899998776666665433211111112
Q ss_pred cccCCCCccccCCeEEEEeccCCceEEEEEe-CCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 369 FTPLDKGVTKYSGGFIWASEKTGFRHLYLHD-INGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~-~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
|+- .++++|..-.+. +..+|| +.+...-.|..++..+.-+. .+|||- .+.+.+++.. ++||
T Consensus 281 FS~--------SGRlLfagy~d~--~c~vWDtlk~e~vg~L~GHeNRvScl~-~s~DG~-av~TgSWDs~--lriW 342 (343)
T KOG0286|consen 281 FSK--------SGRLLFAGYDDF--TCNVWDTLKGERVGVLAGHENRVSCLG-VSPDGM-AVATGSWDST--LRIW 342 (343)
T ss_pred Ecc--------cccEEEeeecCC--ceeEeeccccceEEEeeccCCeeEEEE-ECCCCc-EEEecchhHh--eeec
Confidence 222 456777764444 788999 55555667888877777664 899997 4566666654 5666
No 139
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.2e-10 Score=106.69 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=180.7
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.++.||+||+.+.-.+.+ ..|.++|...|+....+.+++ .|+..+.|..
T Consensus 15 ~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skk-----------------------yG~~~~~Fth 66 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKK-----------------------YGVDLACFTH 66 (311)
T ss_pred CceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeeccc-----------------------ccccEEEEec
Confidence 445899999999999875543 369999999998766665544 4677677766
Q ss_pred cCCCceEEEEe---CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCC
Q 004067 135 TSSKKKIIMVP---LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 135 ~~~dg~~l~~~---~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~ 210 (776)
....++.. .+.+|..+++.+.+-. +.-.+....+..+..||-+...+-.+. ..|.+||+...+.+-+.....
T Consensus 67 ---~~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~ 142 (311)
T KOG1446|consen 67 ---HSNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG 142 (311)
T ss_pred ---CCceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC
Confidence 55556655 4678999999998887 666666667899999998877666654 479999998766554433322
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
....+|.|.|=.+|... ++ ..|.+|
T Consensus 143 -------------------~pi~AfDp~GLifA~~~--~~----------------------------------~~IkLy 167 (311)
T KOG1446|consen 143 -------------------RPIAAFDPEGLIFALAN--GS----------------------------------ELIKLY 167 (311)
T ss_pred -------------------CcceeECCCCcEEEEec--CC----------------------------------CeEEEE
Confidence 22567999995444332 21 135555
Q ss_pred EcCC---CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE-EEeccCceeecc
Q 004067 291 SAAG---GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI-LVEELDSWVNLH 366 (776)
Q Consensus 291 d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~ 366 (776)
|+.. |-...+.+. .........+.||||||.|+... ....++++|+=+|....- .......-....
T Consensus 168 D~Rs~dkgPF~tf~i~------~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSIT------DNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred EecccCCCCceeEccC------CCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 5542 222233221 12234566799999999887776 455689999988886543 333333222344
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC-eEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~-~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
..|.| ++.+++.+..+| +|.+|++++++..-.+.+. ......+.|+| ++..|.+... +..+|..
T Consensus 238 a~ftP--------ds~Fvl~gs~dg--~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP--~~~mf~sa~s---~l~fw~p 302 (311)
T KOG1446|consen 238 ATFTP--------DSKFVLSGSDDG--TIHVWNLETGKKVAVLRGPNGGPVSCVRFNP--RYAMFVSASS---NLVFWLP 302 (311)
T ss_pred EEECC--------CCcEEEEecCCC--cEEEEEcCCCcEeeEecCCCCCCccccccCC--ceeeeeecCc---eEEEEec
Confidence 55666 556888888888 8889998887655444442 22223334666 4445554432 2556655
Q ss_pred Ee
Q 004067 446 KL 447 (776)
Q Consensus 446 ~~ 447 (776)
+.
T Consensus 303 ~~ 304 (311)
T KOG1446|consen 303 DE 304 (311)
T ss_pred cc
Confidence 53
No 140
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.40 E-value=1.5e-10 Score=105.58 Aligned_cols=268 Identities=11% Similarity=0.083 Sum_probs=172.1
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEE-eeCCCCCceecCCccccee
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQL-THGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~l-t~~~~~~~~~~~~~~~~~~ 224 (776)
.|-.|..|.+.+|.....+...+ ..+.....+||++.||.....+|.++|+.++....+ +.++..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~d-sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~------------- 83 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPD-SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT------------- 83 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCc-cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccC-------------
Confidence 56679999999999884555544 458899999999999999999999999998876433 333221
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEccc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQC 304 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~ 304 (776)
.-+.++.|.-||+.++..+.| ..+.+||+..-...++
T Consensus 84 ---kNVtaVgF~~dgrWMyTgseD------------------------------------gt~kIWdlR~~~~qR~---- 120 (311)
T KOG0315|consen 84 ---KNVTAVGFQCDGRWMYTGSED------------------------------------GTVKIWDLRSLSCQRN---- 120 (311)
T ss_pred ---CceEEEEEeecCeEEEecCCC------------------------------------ceEEEEeccCcccchh----
Confidence 014467799999988765533 3478898877554444
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCCCccccCCeE
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGGF 383 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (776)
..+...+..+...|+-..|+... ..+.|++||+..... ..+..+.+. .+.. . .+.+ +++.
T Consensus 121 -----~~~~spVn~vvlhpnQteLis~d----qsg~irvWDl~~~~c~~~liPe~~~-~i~s---l-----~v~~-dgsm 181 (311)
T KOG0315|consen 121 -----YQHNSPVNTVVLHPNQTELISGD----QSGNIRVWDLGENSCTHELIPEDDT-SIQS---L-----TVMP-DGSM 181 (311)
T ss_pred -----ccCCCCcceEEecCCcceEEeec----CCCcEEEEEccCCccccccCCCCCc-ceee---E-----EEcC-CCcE
Confidence 44556677888888755555443 345699999977643 333333221 1100 0 0122 3334
Q ss_pred EEEeccCCceEEEEEeCCCce----eecccc---CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccc
Q 004067 384 IWASEKTGFRHLYLHDINGTC----LGPITE---GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 456 (776)
Q Consensus 384 ~~~s~~~g~~~l~~~~~~g~~----~~~lt~---~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 456 (776)
+...+..| +.|+|++-++. ..++++ +......-. +|||+|+|+..+++ ....||..+- - ..
T Consensus 182 l~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-lSPd~k~lat~ssd---ktv~iwn~~~---~---~k 249 (311)
T KOG0315|consen 182 LAAANNKG--NCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-LSPDVKYLATCSSD---KTVKIWNTDD---F---FK 249 (311)
T ss_pred EEEecCCc--cEEEEEccCCCccccceEhhheecccceEEEEE-ECCCCcEEEeecCC---ceEEEEecCC---c---ee
Confidence 44455556 89999965542 223332 333344444 89999987766654 2378888763 1 01
Q ss_pred cceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 457 APVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 457 ~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
.-..|+++.+ +.+.+||.||++|+...+. . ....|+...++.+++
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd-~---~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSD-H---TARLWDLSAGKEVRQ 295 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCC-C---ceeecccccCceeee
Confidence 3355666654 5688999999998877544 2 356667878876554
No 141
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.40 E-value=4.6e-10 Score=121.40 Aligned_cols=261 Identities=14% Similarity=0.077 Sum_probs=164.7
Q ss_pred cCceeCCCCCEEEEEEC--C----cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 173 IDPHLSSDGTMIAFVRD--C----ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 173 ~~~~~SpDg~~la~~~~--~----~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
....+||||++|||..+ + .|+++|+++|+...-...... ...+.|++||+.++|.+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~------------------~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK------------------FSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE------------------SEEEEECTTSSEEEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc------------------cceEEEeCCCCEEEEEE
Confidence 45788999999999864 2 499999999955332211100 11378999999999998
Q ss_pred ecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE--EEEcccCCCCCCCCcceEEEEEeccC
Q 004067 247 VDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGTDQNYDEEYLARVNWMHG 324 (776)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~SpD 324 (776)
.+...... +..-..+|+.+.+.++... .+-.. .........+..|+|
T Consensus 189 ~~~~~~~~-------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~------~~~~~~~~~~~~s~d 237 (414)
T PF02897_consen 189 FDEDQRTS-------------------------DSGYPRQVYRHKLGTPQSEDELVFEE------PDEPFWFVSVSRSKD 237 (414)
T ss_dssp CSTTTSS--------------------------CCGCCEEEEEEETTS-GGG-EEEEC-------TTCTTSEEEEEE-TT
T ss_pred eCcccccc-------------------------cCCCCcEEEEEECCCChHhCeeEEee------cCCCcEEEEEEecCc
Confidence 76542210 0011267899998887643 33211 122223667899999
Q ss_pred CeEEEEEEeecCceEEEEEEECCCC-----ceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEE
Q 004067 325 NILTAQVLNRSQTKLKVLKFDIKTG-----QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLH 398 (776)
Q Consensus 325 g~~l~~~~~~~~~~~~l~~~d~~~g-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~ 398 (776)
|++|++.+........+|++|+..+ ..+.+........... ...++.+++.++. .....|+.+
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-----------~~~~~~~yi~Tn~~a~~~~l~~~ 306 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-----------DHHGDRLYILTNDDAPNGRLVAV 306 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-----------EEETTEEEEEE-TT-TT-EEEEE
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-----------EccCCEEEEeeCCCCCCcEEEEe
Confidence 9988877776655589999999875 6777776544322111 1225667777765 335699999
Q ss_pred eCCCcee---e-ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCC-CCCccccceeecCC--CCeEEEE
Q 004067 399 DINGTCL---G-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPVKLTNG--KGKHVAV 471 (776)
Q Consensus 399 ~~~g~~~---~-~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~-g~~~~~~~~~l~~~--~~~~~~~ 471 (776)
+++.... . .|..+...+ .+..++..+++|++....++. .+|+.+++ . +. ....+... ..+..+.
T Consensus 307 ~l~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~Lvl~~~~~~~--~~l~v~~~--~~~~----~~~~~~~p~~g~v~~~~ 377 (414)
T PF02897_consen 307 DLADPSPAEWWTVLIPEDEDV-SLEDVSLFKDYLVLSYRENGS--SRLRVYDL--DDGK----ESREIPLPEAGSVSGVS 377 (414)
T ss_dssp ETTSTSGGGEEEEEE--SSSE-EEEEEEEETTEEEEEEEETTE--EEEEEEET--T-TE----EEEEEESSSSSEEEEEE
T ss_pred cccccccccceeEEcCCCCce-eEEEEEEECCEEEEEEEECCc--cEEEEEEC--CCCc----EEeeecCCcceEEeccC
Confidence 9876542 2 343333211 122345567778888776653 67888887 4 33 33333332 2345667
Q ss_pred EcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 472 LDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 472 ~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
..+++..+.+..++..+|+.+|.+|+.+++.
T Consensus 378 ~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp S-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 8899999999999999999999999999984
No 142
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.40 E-value=1.4e-10 Score=105.73 Aligned_cols=250 Identities=12% Similarity=0.046 Sum_probs=166.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.++||++.||-.. ..+|.++|+.++++..+.+.+. +..++.++.|--
T Consensus 43 VNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~---------------------h~kNVtaVgF~~-- 93 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEG---------------------HTKNVTAVGFQC-- 93 (311)
T ss_pred eeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEec---------------------cCCceEEEEEee--
Confidence 47889999999998432 3579999999998755543222 125788999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCc-eeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINE-QRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~-~~~lt~~~~~~~ 213 (776)
||++++.. .|+.+.+||+..-... ++-.... .+..+...|+-..|+... +++|++||+.... ..++..+...
T Consensus 94 -dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~s-pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~-- 168 (311)
T KOG0315|consen 94 -DGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNS-PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT-- 168 (311)
T ss_pred -cCeEEEecCCCceEEEEeccCcccc-hhccCCC-CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc--
Confidence 99999986 7889999999886665 4444443 477888888776655543 4689999998774 3455443321
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+.++...|||+.++-+. ++ ...|+|++-
T Consensus 169 ---------------~i~sl~v~~dgsml~a~n-nk-----------------------------------G~cyvW~l~ 197 (311)
T KOG0315|consen 169 ---------------SIQSLTVMPDGSMLAAAN-NK-----------------------------------GNCYVWRLL 197 (311)
T ss_pred ---------------ceeeEEEcCCCcEEEEec-CC-----------------------------------ccEEEEEcc
Confidence 145788999999887543 22 347888887
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC-ceE-EEEEeccCceeeccccccc
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QRK-VILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g-~~~-~l~~~~~~~~~~~~~~~~~ 371 (776)
++.....-. +...+..+.+++....+|||+|+|+..+ .+.++++|+.++- +.. .+..+ .+|+-+ .+|+.
T Consensus 198 ~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~k~lat~s----sdktv~iwn~~~~~kle~~l~gh--~rWvWd-c~FS~ 268 (311)
T KOG0315|consen 198 NHQTASELE--PVHKFQAHNGHILRCLLSPDVKYLATCS----SDKTVKIWNTDDFFKLELVLTGH--QRWVWD-CAFSA 268 (311)
T ss_pred CCCccccce--EhhheecccceEEEEEECCCCcEEEeec----CCceEEEEecCCceeeEEEeecC--CceEEe-eeecc
Confidence 654221100 1112456788999999999999988776 4567889988775 222 23333 245422 23433
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCce-eecccc
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITE 410 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~ 410 (776)
++.++++.+.++ ...+|++..++ .++...
T Consensus 269 --------dg~YlvTassd~--~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 269 --------DGEYLVTASSDH--TARLWDLSAGKEVRQYQG 298 (311)
T ss_pred --------CccEEEecCCCC--ceeecccccCceeeecCC
Confidence 455777777776 55566766554 444443
No 143
>PRK05855 short chain dehydrogenase; Validated
Probab=99.39 E-value=5.4e-12 Score=143.82 Aligned_cols=216 Identities=13% Similarity=0.022 Sum_probs=124.5
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh
Q 004067 531 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 610 (776)
Q Consensus 531 ~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~ 610 (776)
..+|..++++.+.+. ..|+|||+||.+++.. .|..+...| ..||.|+++|+||+|.|.......
T Consensus 9 ~~~g~~l~~~~~g~~-------~~~~ivllHG~~~~~~-------~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~~~~- 72 (582)
T PRK05855 9 SSDGVRLAVYEWGDP-------DRPTVVLVHGYPDNHE-------VWDGVAPLL-ADRFRVVAYDVRGAGRSSAPKRTA- 72 (582)
T ss_pred eeCCEEEEEEEcCCC-------CCCeEEEEcCCCchHH-------HHHHHHHHh-hcceEEEEecCCCCCCCCCCCccc-
Confidence 348888988876532 2378999999876543 234456667 568999999999999886422111
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCC-CCCcc-c-----c---
Q 004067 611 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAP-VTSWD-G-----Y--- 678 (776)
Q Consensus 611 ~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~-~~~~~-~-----~--- 678 (776)
.....++.+.+..+++.... ..++.|+||||||.+++.++... +..+...+..++ ..+.. . .
T Consensus 73 -----~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (582)
T PRK05855 73 -----AYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRP 146 (582)
T ss_pred -----ccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhccccc
Confidence 12244444444444433211 23499999999999998777652 333333332221 11000 0 0
Q ss_pred ---------ccccc----------------------c---cccC----CCCCC-------------ccchhcC----Chh
Q 004067 679 ---------DTFYT----------------------E---KYMG----LPSED-------------PVGYEYS----SVM 703 (776)
Q Consensus 679 ---------~~~~~----------------------~---~~~~----~~~~~-------------~~~~~~~----~~~ 703 (776)
..... . .... .+... ...+... ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (582)
T PRK05855 147 TPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSR 226 (582)
T ss_pred chhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhcc
Confidence 00000 0 0000 00000 0000000 000
Q ss_pred hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 704 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.....+++|+|+++|.+|..+++.....+.+.+ ...++++++ +||.. ..+.++.+.+.+.+|+.+
T Consensus 227 ~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~----~~~~~~~~~-~gH~~-~~e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 227 PRERYTDVPVQLIVPTGDPYVRPALYDDLSRWV----PRLWRREIK-AGHWL-PMSHPQVLAAAVAEFVDA 291 (582)
T ss_pred CccCCccCceEEEEeCCCcccCHHHhccccccC----CcceEEEcc-CCCcc-hhhChhHHHHHHHHHHHh
Confidence 112347899999999999999988777665543 345677776 58977 566788889999999875
No 144
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.38 E-value=4.1e-10 Score=111.91 Aligned_cols=265 Identities=13% Similarity=0.154 Sum_probs=178.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++|+-||..||+-+.. ..+.+|+..|+....+..|+. +|.+..|+.
T Consensus 238 VT~L~Wn~~G~~LatG~~~-----G~~riw~~~G~l~~tl~~Hkg------------------------PI~slKWnk-- 286 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSED-----GEARIWNKDGNLISTLGQHKG------------------------PIFSLKWNK-- 286 (524)
T ss_pred cceEEecCCCCeEEEeecC-----cEEEEEecCchhhhhhhccCC------------------------ceEEEEEcC--
Confidence 5899999999999976653 469999999888777766544 899999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce-eEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ-RQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~-~~lt~~~~~~~~ 214 (776)
+|.+|+.. .++.+.+||..+|+..+.++... .....+.|--+..-..-..+..|+++.+..... ..+.-...
T Consensus 287 -~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g---- 360 (524)
T KOG0273|consen 287 -KGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG---- 360 (524)
T ss_pred -CCCEEEeccCCccEEEEeccCceEEEeeeecc-CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC----
Confidence 99999976 78899999999998884444433 224556776554433333345577777654332 22221111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.+.++.|.|-|+.|+..+.| ..|.+|....
T Consensus 361 --------------~V~alk~n~tg~LLaS~SdD------------------------------------~TlkiWs~~~ 390 (524)
T KOG0273|consen 361 --------------EVNALKWNPTGSLLASCSDD------------------------------------GTLKIWSMGQ 390 (524)
T ss_pred --------------ceEEEEECCCCceEEEecCC------------------------------------CeeEeeecCC
Confidence 15688999999988877754 3467777543
Q ss_pred Cc-eEEEEcccCCCCCCCCcceEEEEEeccCCe---------EEEEEEeecCceEEEEEEECCCCceE-EEEEeccCcee
Q 004067 295 GP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNI---------LTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWV 363 (776)
Q Consensus 295 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~---------~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~ 363 (776)
.. ...+ ..+...|+.+.|||+|. .++.++ .+..+.+||++.|... .+..+..+.+.
T Consensus 391 ~~~~~~l---------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas----~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 391 SNSVHDL---------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS----FDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred Ccchhhh---------hhhccceeeEeecCCCCccCCCcCCceEEEee----cCCeEEEEEccCCceeEeeccCCCceEE
Confidence 32 2222 34556688899999874 222222 4667999999998864 45577777665
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.. |+| ++.++...+.+| .|.+|+...++..+-..++..+..+. |+.+|.+|.......
T Consensus 458 va---fS~--------~g~ylAsGs~dg--~V~iws~~~~~l~~s~~~~~~Ifel~-Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 458 VA---FSP--------NGRYLASGSLDG--CVHIWSTKTGKLVKSYQGTGGIFELC-WNAAGDKLGACASDG 515 (524)
T ss_pred EE---ecC--------CCcEEEecCCCC--eeEeccccchheeEeecCCCeEEEEE-EcCCCCEEEEEecCC
Confidence 43 554 334555666788 77778877776655555555555554 999998877776543
No 145
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=5.9e-09 Score=109.65 Aligned_cols=327 Identities=12% Similarity=0.077 Sum_probs=200.3
Q ss_pred CCeeeEEEeecCCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE 201 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~ 201 (776)
..+...+|+- -|.+|+|.- -++|-+|+..+..-+.... +...++..+++||||+.||-..+ +.+-+||...|-
T Consensus 308 ~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 308 QKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 3577889988 899999984 4589999887765542222 22335788999999999998765 579999998886
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.. +|+.... .+ +.++.|+.+|+.|+..+.|
T Consensus 384 C~-vTFteHt----s~------------Vt~v~f~~~g~~llssSLD--------------------------------- 413 (893)
T KOG0291|consen 384 CF-VTFTEHT----SG------------VTAVQFTARGNVLLSSSLD--------------------------------- 413 (893)
T ss_pred EE-EEeccCC----Cc------------eEEEEEEecCCEEEEeecC---------------------------------
Confidence 53 2332211 11 5578899999999887765
Q ss_pred CCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-Eecc
Q 004067 282 NVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEEL 359 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~ 359 (776)
..+..||++..+. ++++.+ .......++-.|.|..+... ..+..+|++|+..+|+...+. .|++
T Consensus 414 ---GtVRAwDlkRYrNfRTft~P--------~p~QfscvavD~sGelV~AG---~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 414 ---GTVRAWDLKRYRNFRTFTSP--------EPIQFSCVAVDPSGELVCAG---AQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred ---CeEEeeeecccceeeeecCC--------CceeeeEEEEcCCCCEEEee---ccceEEEEEEEeecCeeeehhcCCCC
Confidence 3467888876654 334332 22344566777778754433 346789999999999976554 4454
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc--eeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~--~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
+... -.|+| .+..+++..-+. ++.+|+.=+. ....|.- ...+..+. |+|||+.|++..-..
T Consensus 480 PVs~---l~f~~--------~~~~LaS~SWDk--TVRiW~if~s~~~vEtl~i-~sdvl~vs-frPdG~elaVaTldg-- 542 (893)
T KOG0291|consen 480 PVSG---LSFSP--------DGSLLASGSWDK--TVRIWDIFSSSGTVETLEI-RSDVLAVS-FRPDGKELAVATLDG-- 542 (893)
T ss_pred ccee---eEEcc--------ccCeEEeccccc--eEEEEEeeccCceeeeEee-ccceeEEE-EcCCCCeEEEEEecc--
Confidence 4221 01333 233566555555 7888884332 3333321 23345554 999999998887653
Q ss_pred ceeeEEEEEeCC-----CCCC----ccccceeecCC-----CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCcee
Q 004067 438 LESHLYCAKLYP-----DWNH----TLEAPVKLTNG-----KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 503 (776)
Q Consensus 438 ~~~~l~~~~~~~-----~g~~----~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~ 503 (776)
++.+|...... +|.. ...+.-++|.. ....++.+|+||+.++-.-.+ ..|.+++..++-.+
T Consensus 543 -qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s----n~iCiY~v~~~vll 617 (893)
T KOG0291|consen 543 -QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES----NSICIYDVPEGVLL 617 (893)
T ss_pred -eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc----ccEEEEECchhhee
Confidence 36666654310 0100 00112223322 124567999999988766544 45999999888765
Q ss_pred Ee--eccCCCch---hhhhccCCCCceEEEEEcCCCcEEEEEE
Q 004067 504 LP--LYEQPLTV---PRIKRLQLEPPDIVQIQANDGTVLYGAL 541 (776)
Q Consensus 504 ~~--l~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 541 (776)
+. +..|.... +.++...|.+.-.+.+...+...+.+.+
T Consensus 618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i 660 (893)
T KOG0291|consen 618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI 660 (893)
T ss_pred eeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence 54 44444332 3556666666655555544444444433
No 146
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.38 E-value=5.3e-13 Score=117.59 Aligned_cols=217 Identities=15% Similarity=0.146 Sum_probs=136.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhh
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 612 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~ 612 (776)
.|.++.+.-+.- ++ -.|+++.|..++.. ..|.+.. .+.+...-+.+++.|.||.|.|..+-......
T Consensus 29 ng~ql~y~~~G~-------G~-~~iLlipGalGs~~--tDf~pql---~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ 95 (277)
T KOG2984|consen 29 NGTQLGYCKYGH-------GP-NYILLIPGALGSYK--TDFPPQL---LSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQ 95 (277)
T ss_pred cCceeeeeecCC-------CC-ceeEeccccccccc--ccCCHHH---HhcCCCCceEEEEECCCCCCCCCCCcccchHH
Confidence 466676665432 12 36778888766643 3343321 23333445999999999999885432221111
Q ss_pred ccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc-----cc-----ccc
Q 004067 613 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-----YD-----TFY 682 (776)
Q Consensus 613 ~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-----~~-----~~~ 682 (776)
....|...+++.+.+. +..++.|+|+|-||..|+.+|+++++.+..+++..+..-... +. ..|
T Consensus 96 ----ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kW 168 (277)
T KOG2984|consen 96 ----FFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKW 168 (277)
T ss_pred ----HHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhh
Confidence 1256777777777665 557999999999999999999999998877776544321111 00 001
Q ss_pred cccccCCCCC-------Cccchh----------cC----ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC
Q 004067 683 TEKYMGLPSE-------DPVGYE----------YS----SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 741 (776)
Q Consensus 683 ~~~~~~~~~~-------~~~~~~----------~~----~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 741 (776)
.++. ..|.+ ....|. .. -.-..++++++|+||+||.+|+.++..++--+.. + ..
T Consensus 169 s~r~-R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~-~---~~ 243 (277)
T KOG2984|consen 169 SARG-RQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPV-L---KS 243 (277)
T ss_pred hhhh-cchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhh-h---cc
Confidence 1100 00000 000010 00 0112468899999999999999998776644333 2 35
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..++.++|.++|.+ +....+++...+.+||++.
T Consensus 244 ~a~~~~~peGkHn~-hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 244 LAKVEIHPEGKHNF-HLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred cceEEEccCCCcce-eeechHHHHHHHHHHHhcc
Confidence 67899999999998 6677899999999999863
No 147
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=4e-09 Score=102.53 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=173.2
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+|+-++|+||+++|+-.-+.+..+.-.-|.+|.+.|....+..... .+.+-...+.++
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~---------------------~g~~p~yvsvd~- 98 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL---------------------PGSPPCYVSVDE- 98 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc---------------------CCCCCeEEEECC-
Confidence 3578899999999987776544444577888888788877664222 112335567888
Q ss_pred CCCceEEEEe--CCCcEEEEeCCC-Cccce---ecCCCC--------CCCccCceeCCCCCEEEEEEC--CcEEEEecCC
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSC-SKPEL---KLSSSS--------CSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI 199 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~-~~~~~---~l~~~~--------~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~ 199 (776)
||++++.+ ..+.|-+..+.. |.... .+.... ........++|||+.|+...- ..|++++++.
T Consensus 99 --~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 99 --DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred --CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 99988876 334455555432 33320 111110 112566789999999888764 4799999998
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|.....+...- ..| .-.+.+.|+|+||..+....
T Consensus 177 g~L~~~~~~~v----~~G----------~GPRHi~FHpn~k~aY~v~E-------------------------------- 210 (346)
T COG2706 177 GKLTPADPAEV----KPG----------AGPRHIVFHPNGKYAYLVNE-------------------------------- 210 (346)
T ss_pred Ccccccccccc----CCC----------CCcceEEEcCCCcEEEEEec--------------------------------
Confidence 86554332110 001 01457889999995444432
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
.+.++.++-++...|+...+..-.-.|..+........+..||||++| +++||+.+.-.++.+|.++|....+.....
T Consensus 211 -L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNRg~dsI~~f~V~~~~g~L~~~~~~~t 288 (346)
T COG2706 211 -LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNRGHDSIAVFSVDPDGGKLELVGITPT 288 (346)
T ss_pred -cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecCCCCeEEEEEEcCCCCEEEEEEEecc
Confidence 223466677777778887776544445445666778889999999865 566899888889999999998776644332
Q ss_pred CceeecccccccCCCCccccCCeE-EEEeccCCceEEEEEeCCCceeecccc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGF-IWASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
.+-. |...-+.. ++++ +.+.+++..-.+|..|.++|....+..
T Consensus 289 eg~~-------PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 289 EGQF-------PRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCcC-------CccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 2110 11111122 3344 444555666789999998887776654
No 148
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.36 E-value=6.4e-10 Score=110.57 Aligned_cols=282 Identities=9% Similarity=0.035 Sum_probs=189.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~ 202 (776)
..+..+.|+- ||..|++. .++.+-+|+..|+... .|..+.+ ++..+.|+.+|.+|+-.. ++.+.+||..+|+.
T Consensus 236 kdVT~L~Wn~---~G~~LatG~~~G~~riw~~~G~l~~-tl~~Hkg-PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNN---DGTLLATGSEDGEARIWNKDGNLIS-TLGQHKG-PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CCcceEEecC---CCCeEEEeecCcEEEEEecCchhhh-hhhccCC-ceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 4688999999 99999997 7889999999998887 7766655 589999999999998875 46799999999998
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+|........ + ..+-|-.+.+ ++....
T Consensus 311 ~q~f~~~s~~----~-------------lDVdW~~~~~-F~ts~t----------------------------------- 337 (524)
T KOG0273|consen 311 KQQFEFHSAP----A-------------LDVDWQSNDE-FATSST----------------------------------- 337 (524)
T ss_pred EEeeeeccCC----c-------------cceEEecCce-EeecCC-----------------------------------
Confidence 8775543210 0 1233544333 221111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC-ceEEEEEeccCc
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QRKVILVEELDS 361 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~ 361 (776)
...|+|+-+....+..- +.++.+.+..+.|.|-|+.|+..+ .+.+|.+|....+ ....+..+....
T Consensus 338 -d~~i~V~kv~~~~P~~t--------~~GH~g~V~alk~n~tg~LLaS~S----dD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 338 -DGCIHVCKVGEDRPVKT--------FIGHHGEVNALKWNPTGSLLASCS----DDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred -CceEEEEEecCCCccee--------eecccCceEEEEECCCCceEEEec----CCCeeEeeecCCCcchhhhhhhccce
Confidence 12355555544333221 146788899999999999888776 5677889986543 344554444332
Q ss_pred eeecccccccCCCCccc-cCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 362 WVNLHDCFTPLDKGVTK-YSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
+.. .|+|.++.... ..+..+.++..++ .+.+||...+ .+..++.+...|.++. |||+|++++.-+... -
T Consensus 405 ~t~---~wsp~g~v~~n~~~~~~l~sas~ds--tV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~ylAsGs~dg---~ 475 (524)
T KOG0273|consen 405 YTI---KWSPTGPVTSNPNMNLMLASASFDS--TVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGRYLASGSLDG---C 475 (524)
T ss_pred eeE---eecCCCCccCCCcCCceEEEeecCC--eEEEEEccCCceeEeeccCCCceEEEE-ecCCCcEEEecCCCC---e
Confidence 221 13343332111 1223444444555 8999997655 4667888888888876 999999766655443 3
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
++||.... |+ ..+.....+++..+.|+.+|.+|...++. ..+.++|+
T Consensus 476 V~iws~~~---~~----l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd----~~vcvldl 522 (524)
T KOG0273|consen 476 VHIWSTKT---GK----LVKSYQGTGGIFELCWNAAGDKLGACASD----GSVCVLDL 522 (524)
T ss_pred eEeccccc---hh----eeEeecCCCeEEEEEEcCCCCEEEEEecC----CCceEEEe
Confidence 89999986 32 56677777778899999999888776654 23666664
No 149
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=2.7e-10 Score=123.44 Aligned_cols=273 Identities=15% Similarity=0.133 Sum_probs=175.9
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCc--cceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecC-C
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSK--PELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLL-I 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~-~ 199 (776)
..+....||| ||+.++.. .+..+.+|+..+.+ ....+... ...+....|||||+.++-.++ ..|++|++. .
T Consensus 160 ~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 160 PSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred CceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhcccccc-ccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 4677889999 99998887 67788899987766 33234222 334888999999998887765 479999994 4
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+...+..... ..+ +..+.|+|+|+.|+..+.|
T Consensus 236 ~~~~~~l~gH---------~~~--------v~~~~f~p~g~~i~Sgs~D------------------------------- 267 (456)
T KOG0266|consen 236 GRNLKTLKGH---------STY--------VTSVAFSPDGNLLVSGSDD------------------------------- 267 (456)
T ss_pred CeEEEEecCC---------CCc--------eEEEEecCCCCEEEEecCC-------------------------------
Confidence 3443332222 122 3478899999877776654
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE---EEEE
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK---VILV 356 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~---~l~~ 356 (776)
..+++||+.+++.... +..+...+..++|++||+.|+..+ .+..|.+||+.++... .+..
T Consensus 268 -----~tvriWd~~~~~~~~~--------l~~hs~~is~~~f~~d~~~l~s~s----~d~~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 268 -----GTVRIWDVRTGECVRK--------LKGHSDGISGLAFSPDGNLLVSAS----YDGTIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred -----CcEEEEeccCCeEEEe--------eeccCCceEEEEECCCCCEEEEcC----CCccEEEEECCCCceeeeecccC
Confidence 3489999999876654 256777899999999999777664 4677999999999943 3333
Q ss_pred eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEE---EEEEeecCCCcEEEEEE
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMV---EQIVGVNEASGQVYFTG 432 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~---~~~~~~s~dg~~i~~~~ 432 (776)
..... ......|+| ++.++++...++ .+.+|++..+. ....+.+...+ ..+. .+++|+.+ +.+
T Consensus 331 ~~~~~-~~~~~~fsp--------~~~~ll~~~~d~--~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-~sg 397 (456)
T KOG0266|consen 331 AENSA-PVTSVQFSP--------NGKYLLSASLDR--TLKLWDLRSGKSVGTYTGHSNLVRCIFSPT-LSTGGKLI-YSG 397 (456)
T ss_pred CCCCC-ceeEEEECC--------CCcEEEEecCCC--eEEEEEccCCcceeeecccCCcceeEeccc-ccCCCCeE-EEE
Confidence 32221 111122333 233555555565 88999988554 44444443321 1222 36677754 444
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCC-C-CeEEEEEcCCcCEEEEEeeCCCC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-K-GKHVAVLDHNMRNFVDFHDSLDS 488 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~-~~~~~~~spdg~~l~~~~~~~~~ 488 (776)
..+.. +.+|.+.. +. .+.++..+ . .+..+.++|..+.++......+.
T Consensus 398 ~~d~~--v~~~~~~s---~~----~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 398 SEDGS--VYVWDSSS---GG----ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred eCCce--EEEEeCCc---cc----hhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 44433 56666652 22 45566655 2 34567888988888877655554
No 150
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.35 E-value=2.9e-11 Score=127.29 Aligned_cols=216 Identities=21% Similarity=0.292 Sum_probs=147.0
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH---HHHhCCcEEEEECCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ---YLRSKGILVWKLDNRGT 599 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~---~l~~~G~~v~~~d~rg~ 599 (776)
....+.++..||++|...+|.|++. ++.|+++..+=.|....... +.... .... .++.+||+|+..|.||.
T Consensus 18 ~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~~~Py~k~~~~-~~~~~-~~~p~~~~~aa~GYavV~qDvRG~ 91 (563)
T COG2936 18 IERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRTRLPYRKRNGT-FGPQL-SALPQPAWFAAQGYAVVNQDVRGR 91 (563)
T ss_pred eeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEeecccccccccc-Ccchh-hcccccceeecCceEEEEeccccc
Confidence 4566888899999999999999885 68899999884333322100 11111 1122 68899999999999999
Q ss_pred CCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc--
Q 004067 600 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-- 677 (776)
Q Consensus 600 g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~-- 677 (776)
++|...+..... .+.+|-.+.|+|+.++++ ...+|+++|.||+|+..+++|+..|.-.++++...+..+...
T Consensus 92 ~~SeG~~~~~~~-----~E~~Dg~D~I~Wia~QpW-sNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~ 165 (563)
T COG2936 92 GGSEGVFDPESS-----REAEDGYDTIEWLAKQPW-SNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDD 165 (563)
T ss_pred ccCCcccceecc-----ccccchhHHHHHHHhCCc-cCCeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccc
Confidence 999776543221 368899999999999988 558999999999999999999998888899998887765210
Q ss_pred --ccc--------ccc---------------------------ccc--------cCCCCC---------CccchhcCChh
Q 004067 678 --YDT--------FYT---------------------------EKY--------MGLPSE---------DPVGYEYSSVM 703 (776)
Q Consensus 678 --~~~--------~~~---------------------------~~~--------~~~~~~---------~~~~~~~~~~~ 703 (776)
+.. .|. +.+ ...|+. ....|...+..
T Consensus 166 ~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~ 245 (563)
T COG2936 166 AFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRV 245 (563)
T ss_pred cccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCcc
Confidence 000 000 000 001111 00134444555
Q ss_pred hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 704 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 704 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
....++++|+|++.|-.|... ..+..++..+... +..+++-|- .|..
T Consensus 246 ~d~~~i~vP~L~i~gW~D~~l--~~~~~~~~~~~~r--~~~lvvgPw-~H~~ 292 (563)
T COG2936 246 ADLSKIKVPALVIGGWSDGYL--HTAIKLFAFLRSR--PVKLVVGPW-THGG 292 (563)
T ss_pred cccccCCCcEEEEcccccccc--cchHHHhhhcccC--CceeEEccc-ccCC
Confidence 667888999999999999743 4556777776544 345555553 5543
No 151
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.34 E-value=7.4e-10 Score=106.73 Aligned_cols=285 Identities=14% Similarity=0.094 Sum_probs=179.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++...||-||.+|| .|.-...|.++...+|..+.....+ ...+.-+.|.|
T Consensus 109 Vt~~~FshdgtlLA-----TGdmsG~v~v~~~stg~~~~~~~~e-----------------------~~dieWl~WHp-- 158 (399)
T KOG0296|consen 109 VTCCSFSHDGTLLA-----TGDMSGKVLVFKVSTGGEQWKLDQE-----------------------VEDIEWLKWHP-- 158 (399)
T ss_pred eEEEEEccCceEEE-----ecCCCccEEEEEcccCceEEEeecc-----------------------cCceEEEEecc--
Confidence 68999999999999 3433457999999998876655311 24577889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee-EEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR-QLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~-~lt~~~~~~~ 213 (776)
-+..|++. .++.+|.|.+..+... ++-.+...+...-.|+||||+++-..+ +-|.+|++++|+.. .++....
T Consensus 159 -~a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--- 233 (399)
T KOG0296|consen 159 -RAHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--- 233 (399)
T ss_pred -cccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc---
Confidence 88888776 7889999999885444 454555556778899999999988765 57999999999653 2322111
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.. ..-+..+.+|..+.-.. .+ ...++.+..
T Consensus 234 ----~~----------~~~~~~~~~~~~~~~g~-~e-----------------------------------~~~~~~~~~ 263 (399)
T KOG0296|consen 234 ----LE----------LPCISLNLAGSTLTKGN-SE-----------------------------------GVACGVNNG 263 (399)
T ss_pred ----Cc----------CCccccccccceeEecc-CC-----------------------------------ccEEEEccc
Confidence 00 11233555565443221 11 224555555
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 373 (776)
+|++.....+..+-........+..+.++|-...+=.. ..+.-+..|.+||+.+...|.+.+++.+.-.
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~-A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~---------- 332 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA-ACGSVDGTIAIYDLAASTLRHICEHEDGVTK---------- 332 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchh-hcccccceEEEEecccchhheeccCCCceEE----------
Confidence 55554443321110112233334445555543321111 1223567899999999999999888766111
Q ss_pred CCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 374 KGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 374 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
+-|.+...++++-.+| .|+.||..+|. ....+.+...+..+. ++|+++. +++.+.++. ..++.+
T Consensus 333 --l~w~~t~~l~t~c~~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~-vvT~s~D~~--a~VF~v 397 (399)
T KOG0296|consen 333 --LKWLNTDYLLTACANG--KVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRL-VVTVSDDNT--ALVFEV 397 (399)
T ss_pred --EEEcCcchheeeccCc--eEEeeeccccceEEEEecCchheeEEE-EcCCCcE-EEEecCCCe--EEEEec
Confidence 1233434667777778 99999977665 556777787788776 8999885 444444432 455544
No 152
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=8.2e-09 Score=104.88 Aligned_cols=285 Identities=15% Similarity=0.149 Sum_probs=161.1
Q ss_pred CceEEEEeC------CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEEecCCC
Q 004067 138 KKKIIMVPL------PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVLNLLIN 200 (776)
Q Consensus 138 dg~~l~~~~------~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~~l~~g 200 (776)
|++++++.. .++|+++|.++.+....+..+.. ... .+||||+.|+.... +.|-++|++++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~--P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFL--PNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCC--Cce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 455555542 26899999999887645554442 333 49999998877654 35999999998
Q ss_pred cee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
+.. .|...+. .+...+.. ...++.|||||.|+....+.
T Consensus 88 ~~~~~i~~p~~-p~~~~~~~----------~~~~~ls~dgk~l~V~n~~p------------------------------ 126 (352)
T TIGR02658 88 LPIADIELPEG-PRFLVGTY----------PWMTSLTPDNKTLLFYQFSP------------------------------ 126 (352)
T ss_pred cEEeEEccCCC-chhhccCc----------cceEEECCCCCEEEEecCCC------------------------------
Confidence 764 3433221 01111111 23678999999887654321
Q ss_pred CCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEE------EEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 280 ASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLAR------VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~------~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
...+-++|+.+++... +..+ ....++. ...+.||+.+.+ .+|.+ |+..
T Consensus 127 ----~~~V~VvD~~~~kvv~ei~vp--------~~~~vy~t~e~~~~~~~~Dg~~~~v------------~~d~~-g~~~ 181 (352)
T TIGR02658 127 ----SPAVGVVDLEGKAFVRMMDVP--------DCYHIFPTANDTFFMHCRDGSLAKV------------GYGTK-GNPK 181 (352)
T ss_pred ----CCEEEEEECCCCcEEEEEeCC--------CCcEEEEecCCccEEEeecCceEEE------------EecCC-CceE
Confidence 1457899999988654 4331 1111111 122233332222 22221 2211
Q ss_pred EEEEeccCceee-cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec------cccC----CeEE--EEEE
Q 004067 353 VILVEELDSWVN-LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP------ITEG----DWMV--EQIV 419 (776)
Q Consensus 353 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~------lt~~----~~~~--~~~~ 419 (776)
.... ..+.. ..+.|.-. .+...+++.+|.+.+ | .|+.+|+.+.+... ++.. .|.. .+..
T Consensus 182 -~~~~--~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G--~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 182 -IKPT--EVFHPEDEYLINHP--AYSNKSGRLVWPTYT-G--KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred -Eeee--eeecCCccccccCC--ceEcCCCcEEEEecC-C--eEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 1000 00000 01111111 113335677888866 5 89999976654222 2211 1211 1346
Q ss_pred eecCCCcEEEEEEccCC-----CceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEE
Q 004067 420 GVNEASGQVYFTGTLDG-----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILL 494 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~-----~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~ 494 (776)
.+++||+++|+...... ....++|.+++.+ ++ ...++..+.....+.+||||+.++|+.+... ..|.+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~k----vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s--~~VsV 326 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GK----RLRKIELGHEIDSINVSQDAKPLLYALSTGD--KTLYI 326 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-Ce----EEEEEeCCCceeeEEECCCCCeEEEEeCCCC--CcEEE
Confidence 69999999999653211 1225899999842 32 5666766667889999999996777665433 35999
Q ss_pred EEcCCCceeEee
Q 004067 495 CSLQDGSLVLPL 506 (776)
Q Consensus 495 ~~~~~~~~~~~l 506 (776)
+|..+++.++.+
T Consensus 327 iD~~t~k~i~~i 338 (352)
T TIGR02658 327 FDAETGKELSSV 338 (352)
T ss_pred EECcCCeEEeee
Confidence 999998877765
No 153
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.33 E-value=2e-09 Score=100.76 Aligned_cols=267 Identities=11% Similarity=0.037 Sum_probs=165.7
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCC--
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLIN-- 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g-- 200 (776)
..|..+.|++ |+++|+.. +++.|.+||.-+...+-.++ -+..-+..-+|||.|+.+|--.-++ --++++.+.
T Consensus 56 ~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 56 NKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 4688999999 99999976 89999999998877662333 3333478899999999999887544 344455432
Q ss_pred --ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 201 --EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 201 --~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
..+ +.. .+.|+..| ..-..|-+|+. |+..+.|
T Consensus 132 ~g~~~-v~r------~l~gHtgy--------lScC~f~dD~~-ilT~SGD------------------------------ 165 (343)
T KOG0286|consen 132 EGNVR-VSR------ELAGHTGY--------LSCCRFLDDNH-ILTGSGD------------------------------ 165 (343)
T ss_pred cccce-eee------eecCccce--------eEEEEEcCCCc-eEecCCC------------------------------
Confidence 111 110 11112211 22455666554 6655432
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
....+||+++|+.... +.++.+.+..++++| |++.++... -+..-++||+..+...+-+..
T Consensus 166 ------~TCalWDie~g~~~~~--------f~GH~gDV~slsl~p~~~ntFvSg~----cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 166 ------MTCALWDIETGQQTQV--------FHGHTGDVMSLSLSPSDGNTFVSGG----CDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred ------ceEEEEEcccceEEEE--------ecCCcccEEEEecCCCCCCeEEecc----cccceeeeeccCcceeEeecc
Confidence 5578999999987665 257888899999999 888666544 455678999988876665543
Q ss_pred c-cCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCce-eeccccC--CeEEEEEEeecCCCcEEEEEE
Q 004067 358 E-LDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTC-LGPITEG--DWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~-~~~lt~~--~~~~~~~~~~s~dg~~i~~~~ 432 (776)
. ...-. -.|-| ++..|.+ ..++ ...++|+.... ....... ...+.++. ||..|+.++.-
T Consensus 228 hesDINs---v~ffP---------~G~afatGSDD~--tcRlyDlRaD~~~a~ys~~~~~~gitSv~-FS~SGRlLfag- 291 (343)
T KOG0286|consen 228 HESDINS---VRFFP---------SGDAFATGSDDA--TCRLYDLRADQELAVYSHDSIICGITSVA-FSKSGRLLFAG- 291 (343)
T ss_pred cccccce---EEEcc---------CCCeeeecCCCc--eeEEEeecCCcEEeeeccCcccCCceeEE-EcccccEEEee-
Confidence 3 22111 12333 2333433 3455 45555655433 3333322 23455654 99999955444
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEee
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~ 484 (776)
..+. ...+|..- .|. ....|..+.+ +.-+.++|||..++..+-
T Consensus 292 y~d~--~c~vWDtl---k~e----~vg~L~GHeNRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 292 YDDF--TCNVWDTL---KGE----RVGVLAGHENRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred ecCC--ceeEeecc---ccc----eEEEeeccCCeeEEEEECCCCcEEEecch
Confidence 3332 37888775 233 4556666654 667899999987765543
No 154
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.32 E-value=1.6e-10 Score=121.89 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=125.8
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC----cEEEEECCC
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLDNR 597 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~r 597 (776)
..+.+.+.+. -|....+++|.|+.+. ++++|+|+++||...... . ........|.+.| .+++++|..
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~--~~~~PvlyllDG~~w~~~----~--~~~~~ld~li~~g~i~P~ivV~id~~ 250 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA--PEERPLAILLDGQFWAES----M--PVWPALDSLTHRGQLPPAVYLLIDAI 250 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC--CCCCCEEEEEECHHhhhc----C--CHHHHHHHHHHcCCCCceEEEEECCC
Confidence 4566677664 4677999999998763 468999999999543321 0 1122344555555 457888863
Q ss_pred CCCCCchhhhhhhhhccCCccHH-HH-HHHHHHHHHcC--CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 598 GTARRGLKFEASIKHNCGRIDAE-DQ-LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 598 g~g~~~~~~~~~~~~~~~~~~~~-D~-~~~i~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.......... . ...+. .+ .+.+-++.++. ..|+++.+|+|+||||+.|++++.++|++|.++++.+|..
T Consensus 251 ~~~~R~~el~--~-----~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 251 DTTHRSQELP--C-----NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred CcccccccCC--c-----hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 2211111110 0 00111 11 23334444442 2477899999999999999999999999999999999875
Q ss_pred CcccccccccccccCCCCCCccchhcCChhhh--hccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCC
Q 004067 674 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 751 (776)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 751 (776)
.|.... . .....+.. .+.. ...-...+++-+|..|... ...+.++.+.|+++|.++++.+++|
T Consensus 324 ww~~~~--------~---~~~~~l~~--~l~~~~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G- 388 (411)
T PRK10439 324 WWPHRG--------G---QQEGVLLE--QLKAGEVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG- 388 (411)
T ss_pred ecCCcc--------C---CchhHHHH--HHHhcccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-
Confidence 332110 0 00000100 0001 1111235888899988544 4677999999999999999999997
Q ss_pred CCCC
Q 004067 752 RHMP 755 (776)
Q Consensus 752 ~H~~ 755 (776)
||..
T Consensus 389 GHd~ 392 (411)
T PRK10439 389 GHDA 392 (411)
T ss_pred CcCH
Confidence 7964
No 155
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.31 E-value=3.8e-11 Score=129.21 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=125.6
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
.+..+.|.|.... ...+.||++||......+.+. . ....++.+|+++||.|+++|+||+|.+...+. +.
T Consensus 173 ~~eLi~Y~P~t~~---~~~~PlLiVp~~i~k~yilDL-~-p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~------~d 241 (532)
T TIGR01838 173 LFQLIQYEPTTET---VHKTPLLIVPPWINKYYILDL-R-PQNSLVRWLVEQGHTVFVISWRNPDASQADKT------FD 241 (532)
T ss_pred cEEEEEeCCCCCc---CCCCcEEEECcccccceeeec-c-cchHHHHHHHHCCcEEEEEECCCCCcccccCC------hh
Confidence 3566666776531 234678889995433222111 0 11246889999999999999999987654321 11
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHH----HHHhhC-CCceEEEEEcCCCCCccccc-----------
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSA----ITLARF-PDVFQCAVSGAPVTSWDGYD----------- 679 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~----~~a~~~-~~~~~~~v~~~~~~~~~~~~----------- 679 (776)
.+..+++.++++.+++.. +.+++.++||||||.++. .+++.+ ++++++++.++...++....
T Consensus 242 dY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~ 319 (532)
T TIGR01838 242 DYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIV 319 (532)
T ss_pred hhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhH
Confidence 233456888888888654 457899999999999852 234444 77888888776655532100
Q ss_pred -----------------------------cc---cccccc-CCC--------CC-----Cc---------cchhcC----
Q 004067 680 -----------------------------TF---YTEKYM-GLP--------SE-----DP---------VGYEYS---- 700 (776)
Q Consensus 680 -----------------------------~~---~~~~~~-~~~--------~~-----~~---------~~~~~~---- 700 (776)
.. +...|+ +.. |. .+ ..|.++
T Consensus 320 ~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~ 399 (532)
T TIGR01838 320 AGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTT 399 (532)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcC
Confidence 00 000011 110 00 00 111111
Q ss_pred ------ChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 701 ------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 701 ------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.....+.+|++|+|+++|.+|.++|+..+..+.+.+ + ..+.++++++||..
T Consensus 400 G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i---~-~~~~~vL~~sGHi~ 456 (532)
T TIGR01838 400 GGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALL---G-GPKTFVLGESGHIA 456 (532)
T ss_pred CeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHC---C-CCEEEEECCCCCch
Confidence 122356788899999999999999999888777665 2 45677889999985
No 156
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=4.6e-10 Score=109.60 Aligned_cols=278 Identities=11% Similarity=0.065 Sum_probs=168.1
Q ss_pred CCeeeEEEeecCCCceEEEEeC-CCc--EEEEeCCCC-ccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-PDG--IYFQDLSCS-KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-~~~--l~~~d~~~~-~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~ 199 (776)
..+--..||+ +|++||.+. +.. ||.+..++. +...++.... ..+..+.||||.++|+-... ..+++||+++
T Consensus 225 dEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~-~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 225 DEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS-QPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred CcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeeccc-CceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 4566778899 999999873 333 555544444 1111333333 34888999999999887764 4699999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|..+.+-..+.+ .+ +...+|-|||..++..+.+
T Consensus 301 gd~~~~y~~~~~------~S----------~~sc~W~pDg~~~V~Gs~d------------------------------- 333 (519)
T KOG0293|consen 301 GDLRHLYPSGLG------FS----------VSSCAWCPDGFRFVTGSPD------------------------------- 333 (519)
T ss_pred chhhhhcccCcC------CC----------cceeEEccCCceeEecCCC-------------------------------
Confidence 998776544311 11 4467899999998765533
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
.++..||+++.......- .....+.+++.++||++++.+. .+..|.+++.++...+.+.++..
T Consensus 334 -----r~i~~wdlDgn~~~~W~g--------vr~~~v~dlait~Dgk~vl~v~----~d~~i~l~~~e~~~dr~lise~~ 396 (519)
T KOG0293|consen 334 -----RTIIMWDLDGNILGNWEG--------VRDPKVHDLAITYDGKYVLLVT----VDKKIRLYNREARVDRGLISEEQ 396 (519)
T ss_pred -----CcEEEecCCcchhhcccc--------cccceeEEEEEcCCCcEEEEEe----cccceeeechhhhhhhccccccC
Confidence 347888888876543311 1123578899999999877766 56679999998877664444333
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccC---CeEEEEEEeecCCCcEEEEEEccC
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEG---DWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~---~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
+.-. |+- + .+++++.++-.+. .+.+||++..+ .++...+ .+.+.+ .|.-....++.+++++
T Consensus 397 ~its-----~~i-----S-~d~k~~LvnL~~q--ei~LWDl~e~~lv~kY~Ghkq~~fiIrS--CFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 397 PITS-----FSI-----S-KDGKLALVNLQDQ--EIHLWDLEENKLVRKYFGHKQGHFIIRS--CFGGGNDKFIASGSED 461 (519)
T ss_pred ceeE-----EEE-----c-CCCcEEEEEcccC--eeEEeecchhhHHHHhhcccccceEEEe--ccCCCCcceEEecCCC
Confidence 3110 111 1 1334444444444 78899987433 2233222 232332 2443344456666655
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+ ++.||... .|+ .+..|+.+.. ++-++++|-........+.+. .|.+|..
T Consensus 462 ~--kvyIWhr~---sgk----ll~~LsGHs~~vNcVswNP~~p~m~ASasDDg---tIRIWg~ 512 (519)
T KOG0293|consen 462 S--KVYIWHRI---SGK----LLAVLSGHSKTVNCVSWNPADPEMFASASDDG---TIRIWGP 512 (519)
T ss_pred c--eEEEEEcc---CCc----eeEeecCCcceeeEEecCCCCHHHhhccCCCC---eEEEecC
Confidence 4 35666555 454 6777887765 456689987765554443332 3555443
No 157
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=6e-09 Score=109.06 Aligned_cols=273 Identities=15% Similarity=0.116 Sum_probs=152.2
Q ss_pred CcCCCceeEcCCCCEEEEEeCCC-CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPD-HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+..|+.+.+|||+++|+-..+.. ..+.-..|.++.++|+.+.+..... .+........
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~---------------------~g~~p~~i~~ 94 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS---------------------GGSSPCHIAV 94 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE---------------------SSSCEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc---------------------CCCCcEEEEE
Confidence 34557889999999888776643 2223345555555577766654211 1234456788
Q ss_pred eecCCCceEEEEe--CCCcEEEEeCCC-Ccccee--cCC----------CCCCCccCceeCCCCCEEEEEEC--CcEEEE
Q 004067 133 VKTSSKKKIIMVP--LPDGIYFQDLSC-SKPELK--LSS----------SSCSPVIDPHLSSDGTMIAFVRD--CELHVL 195 (776)
Q Consensus 133 sp~~~dg~~l~~~--~~~~l~~~d~~~-~~~~~~--l~~----------~~~~~~~~~~~SpDg~~la~~~~--~~l~~~ 195 (776)
+| ||++|+.+ ..+.+.+++++. |..... +.. ..........++|||+.++.... +.|+++
T Consensus 95 ~~---~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 95 DP---DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp CT---TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ec---CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 89 99999988 567788888765 433311 110 11123567899999998866543 458888
Q ss_pred ecCCCc--eeE---EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 196 NLLINE--QRQ---LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 196 ~l~~g~--~~~---lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+++.+. ... +...... | .+.+.|+|||+.++......
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~-----G------------PRh~~f~pdg~~~Yv~~e~s--------------------- 213 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGS-----G------------PRHLAFSPDGKYAYVVNELS--------------------- 213 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTS-----S------------EEEEEE-TTSSEEEEEETTT---------------------
T ss_pred EEeCCCceEEEeeccccccCC-----C------------CcEEEEcCCcCEEEEecCCC---------------------
Confidence 876554 322 1111110 1 34788999999766554211
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
....++-++..+++.+.+..-...+...........+.+||||++| ++++|+.+.-.++.+|.++|.
T Consensus 214 ------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 214 ------------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp ------------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECTTTEEEEEEECTTTTT
T ss_pred ------------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEeccCCEEEEEEEecCCCc
Confidence 1233444444466555443322111112223367789999999865 456788777667777777888
Q ss_pred eEEEEEeccCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCceeeccc
Q 004067 351 RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTCLGPIT 409 (776)
Q Consensus 351 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~~~~lt 409 (776)
.+.+..-....-....-.+ +.+ +++++++ ..++.-.+|.+|.++|....+.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~-------s~~-g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAF-------SPD-GRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE--------TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEE-------eCC-CCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 8776443221000000111 222 3344444 4567667777787787665554
No 158
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.30 E-value=1.4e-10 Score=110.15 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCC-CCC--
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR-GTA-- 600 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r-g~g-- 600 (776)
.+..+|.. ++....+++|.|.... .+.|+||++||+.++....... ..| -....+.||.|+.||.- ++-
T Consensus 35 ~~~~s~~~-~g~~r~y~l~vP~g~~---~~apLvv~LHG~~~sgag~~~~-sg~---d~lAd~~gFlV~yPdg~~~~wn~ 106 (312)
T COG3509 35 SSVASFDV-NGLKRSYRLYVPPGLP---SGAPLVVVLHGSGGSGAGQLHG-TGW---DALADREGFLVAYPDGYDRAWNA 106 (312)
T ss_pred CCcccccc-CCCccceEEEcCCCCC---CCCCEEEEEecCCCChHHhhcc-cch---hhhhcccCcEEECcCccccccCC
Confidence 44455554 6677999999998853 3449999999977665432222 122 33455789999999632 211
Q ss_pred CCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.....+........+..++..+.+.++.+..+..||+.||+|.|.|.||.|+..+++.+|++|.++..+++..
T Consensus 107 ~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 107 NGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 0000111111123344567788899999999999999999999999999999999999999999988887664
No 159
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=109.33 Aligned_cols=229 Identities=17% Similarity=0.160 Sum_probs=144.2
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
..++.+||..+.+.+|...+ +.+-.+.+-|+.+... ..++.++..+++.||.|+.+||||.|.|...-
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~------~~~g~~~va~a~Gv~~------~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~ 75 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG------KASGRLVVAGATGVGQ------YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPAS 75 (281)
T ss_pred cccccCCCccCccccccCCC------CCCCcEEecccCCcch------hHhHHHHHHhhccCceEEEEecccccCCCccc
Confidence 66788899999999986544 3343455556544322 24556788999999999999999999886544
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcC--CCCCccc-------
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA--PVTSWDG------- 677 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~--~~~~~~~------- 677 (776)
.......+.+....|+.++++.+.+.. ..-....+||||||.+...+.. ++..-.+++..+ +...|+.
T Consensus 76 ~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~gagwsg~m~~~~~l~~ 152 (281)
T COG4757 76 LSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGAGWSGWMGLRERLGA 152 (281)
T ss_pred cccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEeccccccccchhhhhcccc
Confidence 433323333345778999999998743 2346899999999987766555 453222222221 2222111
Q ss_pred -------------ccccccccccCCCCCCc-------cch------hcCC-----hhhhhccCCCcEEEEecCCCCccCh
Q 004067 678 -------------YDTFYTEKYMGLPSEDP-------VGY------EYSS-----VMHHVHKMKGKLLLVHGMIDENVHF 726 (776)
Q Consensus 678 -------------~~~~~~~~~~~~~~~~~-------~~~------~~~~-----~~~~~~~i~~P~lii~G~~D~~v~~ 726 (776)
+...+..++++.+.+-+ ..| .-.+ ..+..+.++.|++.+...+|+.+|+
T Consensus 153 ~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~ 232 (281)
T COG4757 153 VLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPP 232 (281)
T ss_pred eeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCH
Confidence 11111122223322111 011 1111 2234677889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCeEEEEecCC----CCCCCCCCcHHHHHHHHHHHH
Q 004067 727 RHTARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 727 ~~~~~~~~~l~~~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~fl 772 (776)
.....+..... +.+.+...++.+ ||.-...+..+..++.++.||
T Consensus 233 As~d~f~~~y~--nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 233 ASRDAFASFYR--NAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHHhhh--cCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 98888888775 356677777754 787544444578888888887
No 160
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.29 E-value=1.3e-10 Score=111.21 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=118.9
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
....++.|.+. +.+|+|||+||... .+.| +..+.++++++||+|+.+|+....... ..
T Consensus 4 ~~l~v~~P~~~----g~yPVv~f~~G~~~----~~s~---Ys~ll~hvAShGyIVV~~d~~~~~~~~-----------~~ 61 (259)
T PF12740_consen 4 KPLLVYYPSSA----GTYPVVLFLHGFLL----INSW---YSQLLEHVASHGYIVVAPDLYSIGGPD-----------DT 61 (259)
T ss_pred CCeEEEecCCC----CCcCEEEEeCCcCC----CHHH---HHHHHHHHHhCceEEEEecccccCCCC-----------cc
Confidence 34567888775 68999999999652 2233 345688999999999999965432211 12
Q ss_pred ccHHHHHHHHHHHHHc---C-----CCCCCcEEEEeechHHHHHHHHHhhC-----CCceEEEEEcCCCCCccccccccc
Q 004067 617 IDAEDQLTGAEWLIKQ---G-----LAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~---~-----~id~~~i~l~G~S~GG~~a~~~a~~~-----~~~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
.+.+++.+.++|+.+. . .+|.++++|+|||.||-+|..++..+ +.+|++++++.|+........
T Consensus 62 ~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~--- 138 (259)
T PF12740_consen 62 DEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQ--- 138 (259)
T ss_pred hhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccC---
Confidence 2466778888887763 1 25888999999999999999999886 457999999999863221100
Q ss_pred ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCC--------cc-Ch-HHHHHHHHHHHHCCCCeEEEEecCCCC
Q 004067 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE--------NV-HF-RHTARLINALVAARKPYEILIFPDERH 753 (776)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~--------~v-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~H 753 (776)
..|. .+ .+. ...-+...|+|++-..-.. .| |. .+-.++++.+ ..+...++..+.||
T Consensus 139 ----~~P~----v~-~~~--p~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~---~~p~~~~v~~~~GH 204 (259)
T PF12740_consen 139 ----TEPP----VL-TYT--PQSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDEC---KPPSWHFVAKDYGH 204 (259)
T ss_pred ----CCCc----cc-cCc--ccccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhc---CCCEEEEEeCCCCc
Confidence 0010 00 000 1112244799888765553 12 22 3557787876 46677778889999
Q ss_pred C
Q 004067 754 M 754 (776)
Q Consensus 754 ~ 754 (776)
.
T Consensus 205 ~ 205 (259)
T PF12740_consen 205 M 205 (259)
T ss_pred h
Confidence 7
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.27 E-value=1.1e-08 Score=107.01 Aligned_cols=220 Identities=9% Similarity=0.046 Sum_probs=117.9
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecC-CCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPK-TCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+..+.+||||++|+-..... ..|..++++ +|+...+...+. ........++|
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~----~~i~~~~~~~~g~l~~~~~~~~----------------------~~~p~~i~~~~ 89 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE----FRVLSYRIADDGALTFAAESPL----------------------PGSPTHISTDH 89 (330)
T ss_pred CCccEEECCCCCEEEEEECCC----CcEEEEEECCCCceEEeeeecC----------------------CCCceEEEECC
Confidence 357889999999886544422 457777775 344433322111 12345678899
Q ss_pred cCCCceEEEEe--CCCcEEEEeCCC-CccceecC--CCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCC-CceeEEe
Q 004067 135 TSSKKKIIMVP--LPDGIYFQDLSC-SKPELKLS--SSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI-NEQRQLT 206 (776)
Q Consensus 135 ~~~dg~~l~~~--~~~~l~~~d~~~-~~~~~~l~--~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~-g~~~~lt 206 (776)
||++|+.. .++.|.+++++. +.....+. .... ......++|||+.++.... +.|+++++++ |......
T Consensus 90 ---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 90 ---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE-GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC-cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 99999877 367788888863 22210111 1111 2455789999998765543 4699999876 3221100
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.... ....+. ..+.++|+|||++++...... ..
T Consensus 166 ~~~~--~~~~g~----------~p~~~~~~pdg~~lyv~~~~~-----------------------------------~~ 198 (330)
T PRK11028 166 PAEV--TTVEGA----------GPRHMVFHPNQQYAYCVNELN-----------------------------------SS 198 (330)
T ss_pred CCce--ecCCCC----------CCceEEECCCCCEEEEEecCC-----------------------------------CE
Confidence 0000 000000 034678999999876654211 34
Q ss_pred EEEEEcC--CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 287 LGVVSAA--GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 287 l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
|.+|+++ +++.+.+..-...|.......+...+.++|||++++.. ++..+.-.++.++.+++..+.
T Consensus 199 v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 199 VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCCeEEEEEEeCCCCeEEE
Confidence 6666665 44433322110001001122234468899999976654 554444344444444444433
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.1e-09 Score=106.73 Aligned_cols=279 Identities=12% Similarity=0.098 Sum_probs=168.6
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC--CCCCCCccCceeCCCCCEEEEEECCc--EEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS--SSSCSPVIDPHLSSDGTMIAFVRDCE--LHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~la~~~~~~--l~~~~l~~ 199 (776)
.++.++.|.| ....|+.. .++.+-++-++|..-. .++ ....-++....|+|+|+..+|++... +|.||+.+
T Consensus 214 ~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 214 GGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CCceEEEecC---CCceEEEecCCCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 5789999999 55555544 4555544444444333 222 22233477889999999777776543 89999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
.+..++..-.. .. -.-.+.+..|||++.|++...+
T Consensus 290 ak~~k~~~~~g-------~e-------~~~~e~FeVShd~~fia~~G~~------------------------------- 324 (514)
T KOG2055|consen 290 AKVTKLKPPYG-------VE-------EKSMERFEVSHDSNFIAIAGNN------------------------------- 324 (514)
T ss_pred cccccccCCCC-------cc-------cchhheeEecCCCCeEEEcccC-------------------------------
Confidence 98887754221 11 0114467889999998886532
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..|++....+++...- .+-.+.+..+.||.||+.|+... ..+.+|.||+....+.....+.+
T Consensus 325 -----G~I~lLhakT~eli~s---------~KieG~v~~~~fsSdsk~l~~~~----~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 325 -----GHIHLLHAKTKELITS---------FKIEGVVSDFTFSSDSKELLASG----GTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred -----ceEEeehhhhhhhhhe---------eeeccEEeeEEEecCCcEEEEEc----CCceEEEEecCCcceEEEEeecC
Confidence 4578888888775432 44567889999999999777665 45689999999876555444433
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEe--CCCceeeccccC---CeEEEEEEeecCCCcEEEEEEcc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD--INGTCLGPITEG---DWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~--~~g~~~~~lt~~---~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
... +..+.+ +. .+.++.+....|.-+||-.+ ..+++++++..- ...+.++ .|++|+..+++.+..
T Consensus 387 ~v~---gts~~~-----S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl-~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 387 SVH---GTSLCI-----SL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL-QFNHDAQILAIASRV 456 (514)
T ss_pred ccc---eeeeee-----cC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee-eeCcchhhhhhhhhc
Confidence 311 111111 11 23355556678888888765 345556655443 2344444 599999976666654
Q ss_pred CCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEee
Q 004067 435 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~ 484 (776)
.. ..+.|..++-- .-... =+..=+.-..+..+.|||.|-++++...
T Consensus 457 ~k-nalrLVHvPS~--TVFsN-fP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 457 KK-NALRLVHVPSC--TVFSN-FPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred cc-cceEEEeccce--eeecc-CCCCCCcccceEEEEecCCCceEEeecC
Confidence 32 22344443310 00000 0111111123567899999999998744
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=4.4e-10 Score=106.17 Aligned_cols=155 Identities=11% Similarity=0.164 Sum_probs=104.9
Q ss_pred eeEEEeecCCCceEEEEeCC-------------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---Cc
Q 004067 128 TRYEWVKTSSKKKIIMVPLP-------------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD---CE 191 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~-------------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~---~~ 191 (776)
..+.|+| +|+.|++... ..||.++..+.... .+.-...+.+..++|||+|+.+|.+.. ..
T Consensus 9 ~~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-eeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 4678999 9999998622 34888887776655 454333335899999999999988853 46
Q ss_pred EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 192 LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 192 l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
+.++++++.....+.... ...+.|||+|+.|+.......
T Consensus 85 v~lyd~~~~~i~~~~~~~--------------------~n~i~wsP~G~~l~~~g~~n~--------------------- 123 (194)
T PF08662_consen 85 VTLYDVKGKKIFSFGTQP--------------------RNTISWSPDGRFLVLAGFGNL--------------------- 123 (194)
T ss_pred cEEEcCcccEeEeecCCC--------------------ceEEEECCCCCEEEEEEccCC---------------------
Confidence 888888744444332111 346889999999998764211
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEe--ecCceEEEEEEECCCC
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN--RSQTKLKVLKFDIKTG 349 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~--~~~~~~~l~~~d~~~g 349 (776)
...|.+||..+.+.... .. ......+.|||||++++.+.. |.+.+..+.+|+..+.
T Consensus 124 ------------~G~l~~wd~~~~~~i~~---------~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 124 ------------NGDLEFWDVRKKKKIST---------FE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ------------CcEEEEEECCCCEEeec---------cc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 14588999996554332 12 234678999999997776643 2334456777777654
No 164
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.25 E-value=1.6e-08 Score=105.61 Aligned_cols=331 Identities=14% Similarity=0.059 Sum_probs=176.8
Q ss_pred EEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-eEEEeecCCCceEEEEe-
Q 004067 68 LITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVT-RYEWVKTSSKKKIIMVP- 145 (776)
Q Consensus 68 ~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~sp~~~dg~~l~~~- 145 (776)
.|.|+.+++ ..+|.++|.++.+....... +.... ...++| ||+++++.
T Consensus 6 ~l~~V~~~~---~~~v~viD~~t~~~~~~i~~------------------------~~~~h~~~~~s~---Dgr~~yv~~ 55 (369)
T PF02239_consen 6 NLFYVVERG---SGSVAVIDGATNKVVARIPT------------------------GGAPHAGLKFSP---DGRYLYVAN 55 (369)
T ss_dssp GEEEEEEGG---GTEEEEEETTT-SEEEEEE-------------------------STTEEEEEE-TT----SSEEEEEE
T ss_pred cEEEEEecC---CCEEEEEECCCCeEEEEEcC------------------------CCCceeEEEecC---CCCEEEEEc
Confidence 356665544 25799999998876433321 11232 456888 99998876
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
.++.|.++|+.+++....+..+. .....++||||++++... .+++-++|.++.+..+....+.. + .
T Consensus 56 rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~-------~---~ 123 (369)
T PF02239_consen 56 RDGTVSVIDLATGKVVATIKVGG--NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM-------P---V 123 (369)
T ss_dssp TTSEEEEEETTSSSEEEEEE-SS--EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----------T
T ss_pred CCCeEEEEECCcccEEEEEecCC--CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc-------c---c
Confidence 67889999999998775555543 367899999999886654 47899999998876544332210 0 0
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
+..-.|+.++.-||+....++.-.+. .+++++|....+......
T Consensus 124 ~~~~~Rv~aIv~s~~~~~fVv~lkd~-----------------------------------~~I~vVdy~d~~~~~~~~- 167 (369)
T PF02239_consen 124 DGPESRVAAIVASPGRPEFVVNLKDT-----------------------------------GEIWVVDYSDPKNLKVTT- 167 (369)
T ss_dssp TTS---EEEEEE-SSSSEEEEEETTT-----------------------------------TEEEEEETTTSSCEEEEE-
T ss_pred cccCCCceeEEecCCCCEEEEEEccC-----------------------------------CeEEEEEeccccccceee-
Confidence 00112244666788887666554332 346777766543222211
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec-----cCceeecccccccCCCCccc
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-----LDSWVNLHDCFTPLDKGVTK 378 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~ 378 (776)
........+..|+|||++++...+.. ..|..+|+++++...+..-. .+...-.+ |
T Consensus 168 ------i~~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph----p------- 227 (369)
T PF02239_consen 168 ------IKVGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH----P------- 227 (369)
T ss_dssp ------EE--TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE----T-------
T ss_pred ------ecccccccccccCcccceeeeccccc---ceeEEEeeccceEEEEeeccccccccccccccC----C-------
Confidence 12234556789999999776665443 26889999988765544321 11000000 1
Q ss_pred cCCeEEEEeccCCceEEEE--------EeCCC-ceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCC
Q 004067 379 YSGGFIWASEKTGFRHLYL--------HDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP 449 (776)
Q Consensus 379 ~~~~~~~~s~~~g~~~l~~--------~~~~g-~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~ 449 (776)
..+.+|.....+...+-. ++... +..++|...... -+...+||++++++...-. +....+..++..+
T Consensus 228 -~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~vwvd~~~~-~~~~~v~viD~~t 303 (369)
T PF02239_consen 228 -GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKT 303 (369)
T ss_dssp -TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT--SSHT-EEEEECCG
T ss_pred -CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc--ceeecCCCCccEEeeccCC-CCCceEEEEECcC
Confidence 122333333322222111 22111 223444433222 2334799999999984322 1235677777621
Q ss_pred CCCCccccceeecCCCC--eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 450 DWNHTLEAPVKLTNGKG--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 450 ~g~~~~~~~~~l~~~~~--~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
- ....++....+ ...+.|++||+++.+.....+. +|.++|..+.+..+++.
T Consensus 304 -l----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~--~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 304 -L----KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG--AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -T----EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT--EEEEEETTTTEEEEEEE
T ss_pred -c----ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC--EEEEEECCCcEEEEEEE
Confidence 1 12344443334 6778999999988887776553 89999998888766654
No 165
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.25 E-value=6.8e-11 Score=110.36 Aligned_cols=118 Identities=22% Similarity=0.171 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCC
Q 004067 523 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 601 (776)
Q Consensus 523 ~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~ 601 (776)
+.+.+.+...++ ++..++-.|.. +..|+++++||++.+.. .|..++..+. .....|+++|+||||.
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~-----t~gpil~l~HG~G~S~L-------SfA~~a~el~s~~~~r~~a~DlRgHGe 115 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA-----TEGPILLLLHGGGSSAL-------SFAIFASELKSKIRCRCLALDLRGHGE 115 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC-----CCccEEEEeecCcccch-------hHHHHHHHHHhhcceeEEEeeccccCc
Confidence 455566655444 57777766653 35699999999877654 3444555554 4467889999999998
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
+--.....+.. .....|+.+.++++-.. ...+|.++||||||.+|.+.|...
T Consensus 116 Tk~~~e~dlS~---eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 116 TKVENEDDLSL---ETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred cccCChhhcCH---HHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhh
Confidence 74333222111 11256777777766533 346899999999999999888753
No 166
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.25 E-value=1e-08 Score=120.10 Aligned_cols=281 Identities=11% Similarity=0.097 Sum_probs=162.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..++|+|||++||..+. ...|.+|+..+..... ....+. ..+ .....+....|+|
T Consensus 486 V~~i~fs~dg~~latgg~-----D~~I~iwd~~~~~~~~~~~~~~~-----~~~------------~~~~~v~~l~~~~- 542 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGV-----NKKIKIFECESIIKDGRDIHYPV-----VEL------------ASRSKLSGICWNS- 542 (793)
T ss_pred EEEEEECCCCCEEEEEeC-----CCEEEEEECCcccccccccccce-----EEe------------cccCceeeEEecc-
Confidence 567899999999986544 2469999975421100 000000 000 0013466788986
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCC
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRD-CELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
+++.+|+.. .++.|.+||+.+++....+..+. ..+....|+| |+..|+-.+. +.|.+||+.++...........
T Consensus 543 -~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~- 619 (793)
T PLN00181 543 -YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN- 619 (793)
T ss_pred -CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC-
Confidence 135666655 68899999999887653444433 3488899997 7777776654 5799999988765432222111
Q ss_pred ceecCCcccceecccCCcceEEE-CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWW-SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~w-spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
+..+.| +++|+.|+..+.+ ..|++||
T Consensus 620 -----------------v~~v~~~~~~g~~latgs~d------------------------------------g~I~iwD 646 (793)
T PLN00181 620 -----------------ICCVQFPSESGRSLAFGSAD------------------------------------HKVYYYD 646 (793)
T ss_pred -----------------eEEEEEeCCCCCEEEEEeCC------------------------------------CeEEEEE
Confidence 235667 5678888876533 3589999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-------eEEEEEeccCceee
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-------RKVILVEELDSWVN 364 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~ 364 (776)
+.+++...... ..+...+..+.|+ |+..++..+ .+..|.+||+..+. .+.+..+.......
T Consensus 647 ~~~~~~~~~~~-------~~h~~~V~~v~f~-~~~~lvs~s----~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 647 LRNPKLPLCTM-------IGHSKTVSYVRFV-DSSTLVSSS----TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred CCCCCccceEe-------cCCCCCEEEEEEe-CCCEEEEEE----CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 98765322111 4566678889997 666666554 45569999986431 22222222111110
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee---------cc-----ccCCeEEEEEEeecCCCcEEEE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG---------PI-----TEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~---------~l-----t~~~~~~~~~~~~s~dg~~i~~ 430 (776)
.|++ .+.++++...+| .+++|+....... .+ ..+...+..+ .|++++..++
T Consensus 715 ---~~s~--------~~~~lasgs~D~--~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v-~ws~~~~~lv- 779 (793)
T PLN00181 715 ---GLSV--------SDGYIATGSETN--EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV-CWRGQSSTLV- 779 (793)
T ss_pred ---EEcC--------CCCEEEEEeCCC--EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE-EEcCCCCeEE-
Confidence 1222 234555666667 7778876543211 01 1112234444 4999998644
Q ss_pred EEccCCCceeeEEEE
Q 004067 431 TGTLDGPLESHLYCA 445 (776)
Q Consensus 431 ~~~~~~~~~~~l~~~ 445 (776)
.++.++. +.+|.+
T Consensus 780 a~~~dG~--I~i~~~ 792 (793)
T PLN00181 780 AANSTGN--IKILEM 792 (793)
T ss_pred EecCCCc--EEEEec
Confidence 4444443 677754
No 167
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2e-09 Score=111.98 Aligned_cols=268 Identities=12% Similarity=0.098 Sum_probs=176.8
Q ss_pred eEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEee
Q 004067 129 RYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTH 207 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~ 207 (776)
-..||. ...+++.....+|+|+..+++.. .|.......+..+.|+++|+.||.... +.+.+||.+.....+-..
T Consensus 182 lldWss----~n~laValg~~vylW~~~s~~v~-~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWSS----ANVLAVALGQSVYLWSASSGSVT-ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhccc----CCeEEEEecceEEEEecCCCceE-EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 357886 66788999999999999999987 666553445889999999999999865 679999988654433222
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.. +..++..++|. +..+...+.+ ..|
T Consensus 257 ~~----------------h~~rvg~laW~--~~~lssGsr~------------------------------------~~I 282 (484)
T KOG0305|consen 257 GS----------------HASRVGSLAWN--SSVLSSGSRD------------------------------------GKI 282 (484)
T ss_pred CC----------------cCceeEEEecc--CceEEEecCC------------------------------------CcE
Confidence 21 12235578887 3333332221 224
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc-eEEEEEeccCceeecc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-RKVILVEELDSWVNLH 366 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~ 366 (776)
..+|+...+...-.. ..+...+-.+.|++|++.++... ++..+++||..+.+ ...++++....-..
T Consensus 283 ~~~dvR~~~~~~~~~-------~~H~qeVCgLkws~d~~~lASGg----nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~-- 349 (484)
T KOG0305|consen 283 LNHDVRISQHVVSTL-------QGHRQEVCGLKWSPDGNQLASGG----NDNVVFIWDGLSPEPKFTFTEHTAAVKAL-- 349 (484)
T ss_pred EEEEEecchhhhhhh-------hcccceeeeeEECCCCCeeccCC----CccceEeccCCCccccEEEeccceeeeEe--
Confidence 444444333211101 44666777899999999887554 56679999985544 34556555442111
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+|.|- -.+++.+........|..||..+++..+-......|.++. |++..+.|+.+-.... .++.||+.+
T Consensus 350 -awcP~-------q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~-Wsk~~kEi~sthG~s~-n~i~lw~~p 419 (484)
T KOG0305|consen 350 -AWCPW-------QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLI-WSKKYKELLSTHGYSE-NQITLWKYP 419 (484)
T ss_pred -eeCCC-------ccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEE-EcCCCCEEEEecCCCC-CcEEEEecc
Confidence 13332 2347777666666799999988877555444456678876 9999998888766543 468899987
Q ss_pred eCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeC
Q 004067 447 LYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 447 ~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~ 485 (776)
.- .....++.+.. +..+++||||..++.....
T Consensus 420 s~-------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 420 SM-------KLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred cc-------ceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 42 14556666654 5677999999998887654
No 168
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.23 E-value=1.9e-08 Score=92.87 Aligned_cols=270 Identities=11% Similarity=0.081 Sum_probs=169.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC-CCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS-SSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g 200 (776)
..+.++.|.- ||.+|+.. -+..+-+|+++.......+. .+....+....|+|-..-+.++.. ..|.+||...+
T Consensus 21 ~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 21 QKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 4688999999 99999986 45667788887764331222 122234677899987665655543 46999999988
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+...-+.+..+ ..-+.|||||+++++...+.
T Consensus 98 k~~~~i~~~~e------------------ni~i~wsp~g~~~~~~~kdD------------------------------- 128 (313)
T KOG1407|consen 98 KCTARIETKGE------------------NINITWSPDGEYIAVGNKDD------------------------------- 128 (313)
T ss_pred cEEEEeeccCc------------------ceEEEEcCCCCEEEEecCcc-------------------------------
Confidence 87766655443 22467999999999876432
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
.|-.+|..+-+...- .........+.|+-++..++.+. +.+.-.|..|. .-.-++.|..++..
T Consensus 129 -----~it~id~r~~~~~~~---------~~~~~e~ne~~w~~~nd~Fflt~--GlG~v~ILsyp-sLkpv~si~AH~sn 191 (313)
T KOG1407|consen 129 -----RITFIDARTYKIVNE---------EQFKFEVNEISWNNSNDLFFLTN--GLGCVEILSYP-SLKPVQSIKAHPSN 191 (313)
T ss_pred -----cEEEEEecccceeeh---------hcccceeeeeeecCCCCEEEEec--CCceEEEEecc-ccccccccccCCcc
Confidence 233444443333221 22233456788997776444433 22333454444 11223344445444
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..-. .+++++-||... +....+-+||++.- -.+.++..+|.|+.+. ||.||+. +.+++++..
T Consensus 192 CicI------------~f~p~GryfA~G-sADAlvSLWD~~ELiC~R~isRldwpVRTlS-FS~dg~~-lASaSEDh~-- 254 (313)
T KOG1407|consen 192 CICI------------EFDPDGRYFATG-SADALVSLWDVDELICERCISRLDWPVRTLS-FSHDGRM-LASASEDHF-- 254 (313)
T ss_pred eEEE------------EECCCCceEeec-cccceeeccChhHhhhheeeccccCceEEEE-eccCcce-eeccCccce--
Confidence 3321 222333444332 12236778887643 2578899999999876 9999995 445555433
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCC
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLD 487 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~ 487 (776)
++|-.+. .|. .+..+.+.....+++|.|.---|||.++..+
T Consensus 255 IDIA~ve---tGd----~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 255 IDIAEVE---TGD----RVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred EEeEecc---cCC----eEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 5666665 454 7888888877889999999999999988654
No 169
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.23 E-value=5e-11 Score=106.02 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=133.4
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECC--CCCCCC---------
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGTARR--------- 602 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--rg~g~~--------- 602 (776)
+..+..-+|.|+.. ...++.|+|+++.|..+.. ++|... ..+.+...++|++|+.||- ||.--.
T Consensus 25 ~c~Mtf~vylPp~a-~~~k~~P~lf~LSGLTCT~---~Nfi~K-sg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG 99 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDA-PRGKRCPVLFYLSGLTCTH---ENFIEK-SGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFG 99 (283)
T ss_pred ccceEEEEecCCCc-ccCCcCceEEEecCCcccc---hhhHhh-hhHHHhHhhcCeEEECCCCCCCccccCCCccccccc
Confidence 46688889999875 3446799999999965442 233221 1235566789999999994 554211
Q ss_pred -chhh-hhhhhhccCC-ccHHH-HH-HHHHHHH-HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc
Q 004067 603 -GLKF-EASIKHNCGR-IDAED-QL-TGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 603 -~~~~-~~~~~~~~~~-~~~~D-~~-~~i~~l~-~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~ 676 (776)
|..| .++....|.. +.+-| +. +..+.+. ....+|+.+++|+||||||+-|+..+.+++.+++.+-+++|+.+..
T Consensus 100 ~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 100 QGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred CCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 1111 1111121211 11111 11 1122222 1234788999999999999999999999999999999999998754
Q ss_pred ccccc--ccccccCCCCCCccchhcCChhhhhccC---CCcEEEEecCCCCccChH-HHHHHHHHHHHCC-CCeEEEEec
Q 004067 677 GYDTF--YTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFR-HTARLINALVAAR-KPYEILIFP 749 (776)
Q Consensus 677 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~-~~~~~~~~~ 749 (776)
.-... -...|+|. +...|..+++...+++. ..-+||-+|..|....-+ -.+.+.+++.... .++.+..-+
T Consensus 180 ~cpWGqKAf~gYLG~---~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~ 256 (283)
T KOG3101|consen 180 NCPWGQKAFTGYLGD---NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQE 256 (283)
T ss_pred cCcchHHHhhcccCC---ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeec
Confidence 32211 11223343 45566666665555544 457999999999876521 2234455554332 577888889
Q ss_pred CCCCCCCC
Q 004067 750 DERHMPRR 757 (776)
Q Consensus 750 ~~~H~~~~ 757 (776)
+-+|+...
T Consensus 257 gyDHSYyf 264 (283)
T KOG3101|consen 257 GYDHSYYF 264 (283)
T ss_pred CCCcceee
Confidence 99998744
No 170
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.22 E-value=8.8e-12 Score=123.33 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=113.4
Q ss_pred cEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEE
Q 004067 589 ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 668 (776)
Q Consensus 589 ~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~ 668 (776)
|.|+++|.||+|.+... ...........|+.+.++.+++...+ +++.++||||||.+++.+++++|++++++++
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999999988731 11123344588999999999887543 3599999999999999999999999999999
Q ss_pred cCCCCC---------ccc--cc--------c-----------ccc------ccc-c------------CCCCC-------
Q 004067 669 GAPVTS---------WDG--YD--------T-----------FYT------EKY-M------------GLPSE------- 692 (776)
Q Consensus 669 ~~~~~~---------~~~--~~--------~-----------~~~------~~~-~------------~~~~~------- 692 (776)
.++... +.. +. . .+. .+. . .....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 988510 000 00 0 000 000 0 00000
Q ss_pred ---CccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHH
Q 004067 693 ---DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 768 (776)
Q Consensus 693 ---~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 768 (776)
....+...+....+.+++.|+|+++|+.|..+|+.....+.+.+ .+.++++++++||.. ..+..+++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~GH~~-~~~~~~~~~~~i 228 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLI----PNSQLVLIEGSGHFA-FLEGPDEFNEII 228 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHS----TTEEEEEETTCCSTH-HHHSHHHHHHHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCCEEEECCCCChHH-HhcCHHhhhhhh
Confidence 00011111233456788999999999999999998888866554 568999999999976 444555555444
No 171
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.21 E-value=3.9e-09 Score=116.00 Aligned_cols=247 Identities=12% Similarity=0.058 Sum_probs=144.3
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCc-EEEEeCCC----------Ccc--------ceecCCCCCCCccCceeCCCCCEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDG-IYFQDLSC----------SKP--------ELKLSSSSCSPVIDPHLSSDGTMIA 185 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~-l~~~d~~~----------~~~--------~~~l~~~~~~~~~~~~~SpDg~~la 185 (776)
..+..+.||| ||++||+..+.. |.+|..++ |.. ...+-.++ ..+....||||+..+|
T Consensus 70 ~sv~CVR~S~---dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 70 GSVNCVRFSP---DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLV 145 (942)
T ss_pred CceeEEEECC---CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEE
Confidence 4677899999 999999996655 55676662 111 11222333 3488899999999999
Q ss_pred EEEC-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCC
Q 004067 186 FVRD-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS 264 (776)
Q Consensus 186 ~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (776)
.++. +.|.+|+..+.+......+... .+.++.|.|=|++++..+.|
T Consensus 146 S~s~DnsViiwn~~tF~~~~vl~~H~s-----------------~VKGvs~DP~Gky~ASqsdD---------------- 192 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELLKVLRGHQS-----------------LVKGVSWDPIGKYFASQSDD---------------- 192 (942)
T ss_pred EecccceEEEEccccceeeeeeecccc-----------------cccceEECCccCeeeeecCC----------------
Confidence 9875 5699999998855544443321 14578899999999987754
Q ss_pred CCCCCcceecCCCCCCCCCeEEEEEEEcCC-CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 265 VGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
..|.+|...+ +-.+.++-+. +......+...++|||||++|+....-......+-+
T Consensus 193 --------------------rtikvwrt~dw~i~k~It~pf---~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 193 --------------------RTLKVWRTSDWGIEKSITKPF---EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred --------------------ceEEEEEcccceeeEeeccch---hhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 3467777544 3344443321 113345678899999999988876544444455555
Q ss_pred EECCCCc-eEEEEEeccCceeec-cc-cccc-CCCCccccCCe---EEEEeccCCceEEEEEeCCCceeeccccC--CeE
Q 004067 344 FDIKTGQ-RKVILVEELDSWVNL-HD-CFTP-LDKGVTKYSGG---FIWASEKTGFRHLYLHDINGTCLGPITEG--DWM 414 (776)
Q Consensus 344 ~d~~~g~-~~~l~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~---~~~~s~~~g~~~l~~~~~~g~~~~~lt~~--~~~ 414 (776)
++-++=+ ...+..|..+.-... ++ .|.- ...+.+..++. ++.+..+|+ .|-+|......+-.+... +..
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr--SlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR--SLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc--cEEEEecCCCCchhhhhhhhcCc
Confidence 5554322 223444433311110 01 1111 00111111211 334445565 888887533322222221 334
Q ss_pred EEEEEeecCCCcEEEEEEcc
Q 004067 415 VEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 415 ~~~~~~~s~dg~~i~~~~~~ 434 (776)
+..+. |+|||-.|+.-+.+
T Consensus 328 I~Dms-WspdG~~LfacS~D 346 (942)
T KOG0973|consen 328 IVDMS-WSPDGFSLFACSLD 346 (942)
T ss_pred eeeee-EcCCCCeEEEEecC
Confidence 55654 99999887777654
No 172
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.20 E-value=2.7e-11 Score=121.40 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=116.9
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC----cEEEEECCCCCCCCchhhhh-
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLDNRGTARRGLKFEA- 608 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~rg~g~~~~~~~~- 608 (776)
|..+..++|.|+++ ...+++|+|+++||.... ...+ ........+...| .++++++..+.......+..
T Consensus 5 g~~~~~~VylP~~y-~~~~~~PvlylldG~~~~---~~~~--~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~ 78 (251)
T PF00756_consen 5 GRDRRVWVYLPPGY-DPSKPYPVLYLLDGQSGW---FRNG--NAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLP 78 (251)
T ss_dssp TEEEEEEEEECTTG-GTTTTEEEEEEESHTTHH---HHHH--HHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSS
T ss_pred CCeEEEEEEECCCC-CCCCCCEEEEEccCCccc---cccc--hHHHHHHHHHHhCCCCceEEEEEecccccccccccccc
Confidence 56789999999986 445899999999994110 0111 1111222233333 45566665443311111110
Q ss_pred -----hhhhccCCccHHHH--HHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccccccc
Q 004067 609 -----SIKHNCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 609 -----~~~~~~~~~~~~D~--~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~ 681 (776)
......+...+.+. .+.+.++.++..+...+.+|+|+||||+.|+.++.++|+.|.++++.+|..+.. ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~--~~~ 156 (251)
T PF00756_consen 79 AGSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS--PSL 156 (251)
T ss_dssp BCTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT--HCH
T ss_pred cccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc--ccc
Confidence 00000011112222 345566666666666669999999999999999999999999999999875433 001
Q ss_pred ccccccCCCCCCccchhcCChhhhh-----ccCCCcEEEEecCCCCccC----------hHHHHHHHHHHHHCCCCeEEE
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHV-----HKMKGKLLLVHGMIDENVH----------FRHTARLINALVAARKPYEIL 746 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~P~lii~G~~D~~v~----------~~~~~~~~~~l~~~~~~~~~~ 746 (776)
|.. .....|...++.... ..-..++++..|..|.... .....++.+.|...+....+.
T Consensus 157 w~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 229 (251)
T PF00756_consen 157 WGP-------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPHTYH 229 (251)
T ss_dssp HHH-------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTTESE
T ss_pred cCc-------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCceEE
Confidence 111 111222233333322 2223578899999998332 122334444455556788888
Q ss_pred EecCCCCCC
Q 004067 747 IFPDERHMP 755 (776)
Q Consensus 747 ~~~~~~H~~ 755 (776)
.++ ++|..
T Consensus 230 ~~~-G~H~~ 237 (251)
T PF00756_consen 230 VFP-GGHDW 237 (251)
T ss_dssp EEH-SESSH
T ss_pred Eec-Cccch
Confidence 888 47854
No 173
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=111.81 Aligned_cols=205 Identities=18% Similarity=0.161 Sum_probs=129.0
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHH-hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
.+.|.++++||..++.. +| ..+...|+ ..+-.|+++|.|-||.|...-. +. .....+|+..+++...
T Consensus 50 ~~~Pp~i~lHGl~GS~~---Nw----~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~---h~--~~~ma~dv~~Fi~~v~ 117 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKE---NW----RSVAKNLSRKLGRDVYAVDVRNHGSSPKITV---HN--YEAMAEDVKLFIDGVG 117 (315)
T ss_pred CCCCceEEecccccCCC---CH----HHHHHHhcccccCceEEEecccCCCCccccc---cC--HHHHHHHHHHHHHHcc
Confidence 46789999999766643 34 44555565 4678999999999998853211 11 1123556666666665
Q ss_pred HcCCCCCCcEEEEeechHH-HHHHHHHhhCCCceEEEEEc--CCC-CCcc------------ccccc-------------
Q 004067 631 KQGLAKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSG--APV-TSWD------------GYDTF------------- 681 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG-~~a~~~a~~~~~~~~~~v~~--~~~-~~~~------------~~~~~------------- 681 (776)
... ...++.++|||||| .+++..+..+|+.+..++.. +|. .... ..+..
T Consensus 118 ~~~--~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~ 195 (315)
T KOG2382|consen 118 GST--RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKS 195 (315)
T ss_pred ccc--ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHH
Confidence 432 23589999999999 77777777888877665543 331 1100 00000
Q ss_pred -------------ccccccCCCCCCc-----------cchhc---CChhhhh--ccCCCcEEEEecCCCCccChHHHHHH
Q 004067 682 -------------YTEKYMGLPSEDP-----------VGYEY---SSVMHHV--HKMKGKLLLVHGMIDENVHFRHTARL 732 (776)
Q Consensus 682 -------------~~~~~~~~~~~~~-----------~~~~~---~~~~~~~--~~i~~P~lii~G~~D~~v~~~~~~~~ 732 (776)
....+...+.+.. +.+.. .+.-..+ .....|+|+++|.++..++..+-.++
T Consensus 196 l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~ 275 (315)
T KOG2382|consen 196 LIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRM 275 (315)
T ss_pred HHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHH
Confidence 0000000011000 11111 1111112 44457999999999999998777677
Q ss_pred HHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 733 INALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 733 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
.+.+ ..+++++++++||+. +.++++++...+.+|+.++
T Consensus 276 ~~~f----p~~e~~~ld~aGHwV-h~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 276 EKIF----PNVEVHELDEAGHWV-HLEKPEEFIESISEFLEEP 313 (315)
T ss_pred HHhc----cchheeecccCCcee-ecCCHHHHHHHHHHHhccc
Confidence 6655 568999999999998 7789999999999998765
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.18 E-value=8.2e-08 Score=100.50 Aligned_cols=243 Identities=10% Similarity=0.064 Sum_probs=130.0
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCC-CCccceecCCCC-CCCccCceeCCCCCEEEEEE--CCcEEEEecCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLS-CSKPELKLSSSS-CSPVIDPHLSSDGTMIAFVR--DCELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~-~~~~~~~l~~~~-~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~ 199 (776)
+.....++| ||++|+.. .++.|+.|+++ .+... .+.... ......+.++|||+.|+... ++.|.++++++
T Consensus 36 ~~~~l~~sp---d~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 36 QVQPMVISP---DKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCccEEECC---CCCEEEEEECCCCcEEEEEECCCCceE-EeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 455678899 99998876 45778878876 34332 221111 11245789999999877665 35688888863
Q ss_pred -CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 200 -NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 200 -g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
|.......... +.. ....+.++|||+.|+......
T Consensus 112 ~g~~~~~~~~~~------~~~---------~~~~~~~~p~g~~l~v~~~~~----------------------------- 147 (330)
T PRK11028 112 DGIPVAPIQIIE------GLE---------GCHSANIDPDNRTLWVPCLKE----------------------------- 147 (330)
T ss_pred CCCCCCceeecc------CCC---------cccEeEeCCCCCEEEEeeCCC-----------------------------
Confidence 32211111000 000 023567999999886544221
Q ss_pred CCCCCeEEEEEEEcCC-CceEE-----EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC--CCc
Q 004067 279 GASNVKVRLGVVSAAG-GPVSW-----MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQ 350 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~-~~~~~-----l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~--~g~ 350 (776)
..|.+||+++ +.... +... .......+.|+|||++++... .. ...|.+|+++ ++.
T Consensus 148 ------~~v~v~d~~~~g~l~~~~~~~~~~~--------~g~~p~~~~~~pdg~~lyv~~-~~--~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 148 ------DRIRLFTLSDDGHLVAQEPAEVTTV--------EGAGPRHMVFHPNQQYAYCVN-EL--NSSVDVWQLKDPHGE 210 (330)
T ss_pred ------CEEEEEEECCCCcccccCCCceecC--------CCCCCceEEECCCCCEEEEEe-cC--CCEEEEEEEeCCCCC
Confidence 3478888875 33221 1111 112244689999999776654 33 3346666654 555
Q ss_pred eEEEEEec-------cCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeC--CCceeeccccC--CeEEEEE
Q 004067 351 RKVILVEE-------LDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDI--NGTCLGPITEG--DWMVEQI 418 (776)
Q Consensus 351 ~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~--~g~~~~~lt~~--~~~~~~~ 418 (776)
.+.+..-. .+.|.. .-.++| +++++|++++ ++ .|.+++. +++..+.+... ......+
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~-~i~~~p--------dg~~lyv~~~~~~--~I~v~~i~~~~~~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAA-DIHITP--------DGRHLYACDRTAS--LISVFSVSEDGSVLSFEGHQPTETQPRGF 279 (330)
T ss_pred EEEEEEEecCCCcCCCCccce-eEEECC--------CCCEEEEecCCCC--eEEEEEEeCCCCeEEEeEEEeccccCCce
Confidence 54332211 001100 001112 3446677654 44 5555554 44432222110 1112233
Q ss_pred EeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 419 VGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 419 ~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.+++||++||.....++ .+.+|.++.
T Consensus 280 -~~~~dg~~l~va~~~~~--~v~v~~~~~ 305 (330)
T PRK11028 280 -NIDHSGKYLIAAGQKSH--HISVYEIDG 305 (330)
T ss_pred -EECCCCCEEEEEEccCC--cEEEEEEcC
Confidence 48999999888765444 378888875
No 175
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.18 E-value=4.1e-10 Score=119.25 Aligned_cols=258 Identities=12% Similarity=0.080 Sum_probs=164.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCC--------CCCCCCCHHHHHHHHHHHHhcCCee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGG--------LDENNISPEEKLRRERLRERGLGVT 128 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~ 128 (776)
++-..||+|++.|| .|.....|++|.+...+.+++-+..... ....-+...+.........+...|.
T Consensus 381 v~ca~fSddssmlA-----~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLA-----CGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred ceeEeecCCcchhh-----ccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 46778999999998 5555567889888865544443221110 0000011111111111123445788
Q ss_pred eEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCceeEEe
Q 004067 129 RYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINEQRQLT 206 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~~~~lt 206 (776)
..+|+| |.++|+.. .|..+-+|.+.+.... ..-.+...++..++|+|-|-+.|-.+..+ -.+|..+.....++.
T Consensus 456 g~sFsP---d~rfLlScSED~svRLWsl~t~s~~-V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 456 GCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCL-VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred eeeecc---cccceeeccCCcceeeeecccceeE-EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 999999 99999976 6789999999987766 44344445678899999998877775443 344444444444443
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.+... -+.-+.|.|++.+++-.+.| ..
T Consensus 532 aghls-----------------DV~cv~FHPNs~Y~aTGSsD------------------------------------~t 558 (707)
T KOG0263|consen 532 AGHLS-----------------DVDCVSFHPNSNYVATGSSD------------------------------------RT 558 (707)
T ss_pred ccccc-----------------ccceEEECCcccccccCCCC------------------------------------ce
Confidence 32221 13347799999988865433 35
Q ss_pred EEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeec
Q 004067 287 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNL 365 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~ 365 (776)
+.+||..+|...++- .++...+..++|||+|++|+... .+..|.+||+.+|.. ..+..+.+..++..
T Consensus 559 VRlWDv~~G~~VRiF--------~GH~~~V~al~~Sp~Gr~LaSg~----ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 559 VRLWDVSTGNSVRIF--------TGHKGPVTALAFSPCGRYLASGD----EDGLIKIWDLANGSLVKQLKGHTGTIYSLS 626 (707)
T ss_pred EEEEEcCCCcEEEEe--------cCCCCceEEEEEcCCCceEeecc----cCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence 799999999888873 56788899999999999988765 566799999999775 44455544333321
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCC
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN 401 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~ 401 (776)
|+. ++.++.+.. +...|.+||+.
T Consensus 627 ---FS~--------dg~vLasgg--~DnsV~lWD~~ 649 (707)
T KOG0263|consen 627 ---FSR--------DGNVLASGG--ADNSVRLWDLT 649 (707)
T ss_pred ---Eec--------CCCEEEecC--CCCeEEEEEch
Confidence 322 334544433 33488888864
No 176
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.17 E-value=1.5e-10 Score=102.64 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=140.6
Q ss_pred hhhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEE
Q 004067 514 PRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWK 593 (776)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 593 (776)
+.+.+-..+..+.+.+-. .| .-..-+|.|.+ ..|+.||+|||.+....+..... .+..+.++||+|.+
T Consensus 35 e~Lkn~~i~r~e~l~Yg~-~g-~q~VDIwg~~~------~~klfIfIHGGYW~~g~rk~cls----iv~~a~~~gY~vas 102 (270)
T KOG4627|consen 35 EELKNKQIIRVEHLRYGE-GG-RQLVDIWGSTN------QAKLFIFIHGGYWQEGDRKMCLS----IVGPAVRRGYRVAS 102 (270)
T ss_pred HHhhhccccchhccccCC-CC-ceEEEEecCCC------CccEEEEEecchhhcCchhcccc----hhhhhhhcCeEEEE
Confidence 344555555666666543 33 45566777755 34899999998776553333221 24567789999999
Q ss_pred ECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh-CCCceEEEEEcCCC
Q 004067 594 LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPV 672 (776)
Q Consensus 594 ~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~~~~~~~~v~~~~~ 672 (776)
++|--+. +.. .-...+.++..+++++.+... +.+.+.+-|||.|+++++.+..+ +..++.++++.+++
T Consensus 103 vgY~l~~---q~h-------tL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~Gv 171 (270)
T KOG4627|consen 103 VGYNLCP---QVH-------TLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGV 171 (270)
T ss_pred eccCcCc---ccc-------cHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhH
Confidence 9985221 110 011237789999999988643 45678899999999999998876 35578899999998
Q ss_pred CCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCC
Q 004067 673 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 752 (776)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 752 (776)
.+.+.....-...-++...++.+ .-...+.....++.|+|++.++.|..--.++...+...+++ ..+.++++.+
T Consensus 172 Y~l~EL~~te~g~dlgLt~~~ae--~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~ 245 (270)
T KOG4627|consen 172 YDLRELSNTESGNDLGLTERNAE--SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYD 245 (270)
T ss_pred hhHHHHhCCccccccCcccchhh--hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcc
Confidence 77654332111111222222111 11122345677888999999999987778899999888754 5788999999
Q ss_pred CC
Q 004067 753 HM 754 (776)
Q Consensus 753 H~ 754 (776)
|.
T Consensus 246 hy 247 (270)
T KOG4627|consen 246 HY 247 (270)
T ss_pred hh
Confidence 96
No 177
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=3.3e-09 Score=100.72 Aligned_cols=346 Identities=15% Similarity=0.058 Sum_probs=193.1
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
-..|||+|++||-.+.- .+.+.|..+-+.-+++.. -..+.-..|+. |
T Consensus 13 ~c~fSp~g~yiAs~~~y------rlviRd~~tlq~~qlf~c------------------------ldki~yieW~a---d 59 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY------RLVIRDSETLQLHQLFLC------------------------LDKIVYIEWKA---D 59 (447)
T ss_pred ceeECCCCCeeeeeeee------EEEEeccchhhHHHHHHH------------------------HHHhhheeeec---c
Confidence 34799999999966542 477777766665454421 13466678999 9
Q ss_pred ceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc--EEEEecCCCceeEEeeCCCCCce
Q 004067 139 KKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE--LHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 139 g~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~--l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
+-+++-. .++.|.+|++..-+-...+..++.+ +....|||||+.|+..+..+ |-+|++-+.....+..-..+
T Consensus 60 s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag-ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~--- 135 (447)
T KOG4497|consen 60 SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG-LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN--- 135 (447)
T ss_pred ceeeeeeeeccceEEEEEeecceeEEEeccCCCc-ceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccC---
Confidence 9998865 6778999999988877677777765 88999999999999998764 67888877766555433222
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEE-----eecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRI-----MHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
..+++|.|||+..+..+..+........ ..-++-.........+..+.+| ..|.|
T Consensus 136 ---------------~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-----~~laV 195 (447)
T KOG4497|consen 136 ---------------VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-----NWLAV 195 (447)
T ss_pred ---------------ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-----cEEEE
Confidence 3478899999988877644321000000 0000000000112222333333 33555
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-------------ceEEEEEEEC--------CC
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-------------TKLKVLKFDI--------KT 348 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------------~~~~l~~~d~--------~~ 348 (776)
||.--.-.... ....-.+-.++|||-|+.|+..+.+.. ...++..+.. ++
T Consensus 196 wd~~Leykv~a---------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~ 266 (447)
T KOG4497|consen 196 WDNVLEYKVYA---------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET 266 (447)
T ss_pred ecchhhheeee---------eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence 55321110000 112234556889998887776654310 0011111111 00
Q ss_pred CceEEEEE------ec---cCceeecc------------cccc-----cCCC----CccccCCeEEEEeccC-CceEEEE
Q 004067 349 GQRKVILV------EE---LDSWVNLH------------DCFT-----PLDK----GVTKYSGGFIWASEKT-GFRHLYL 397 (776)
Q Consensus 349 g~~~~l~~------~~---~~~~~~~~------------~~~~-----~~~~----~~~~~~~~~~~~s~~~-g~~~l~~ 397 (776)
-+..++.. .. ...|-..+ +... |.+. .++++.+..|..+.++ -.+.||+
T Consensus 267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL 346 (447)
T ss_pred cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence 00000000 00 00111000 0001 1111 1455556655544443 3568999
Q ss_pred EeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCc
Q 004067 398 HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNM 476 (776)
Q Consensus 398 ~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg 476 (776)
||+...+...+......++.+. |+|.--.+++-.+. .+||-..+ .|. ....++..+. +..+.|.-+|
T Consensus 347 Wdlq~l~l~avLiQk~piraf~-WdP~~prL~vctg~-----srLY~W~p--sg~----~~V~vP~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 347 WDLQNLKLHAVLIQKHPIRAFE-WDPGRPRLVVCTGK-----SRLYFWAP--SGP----RVVGVPKKGFNIQKLQWLQPG 414 (447)
T ss_pred EechhhhhhhhhhhccceeEEE-eCCCCceEEEEcCC-----ceEEEEcC--CCc----eEEecCCCCceeeeEEecCCC
Confidence 9998877666665556666665 99987666666543 56887776 553 4555555442 4567888888
Q ss_pred CEEEEE
Q 004067 477 RNFVDF 482 (776)
Q Consensus 477 ~~l~~~ 482 (776)
..++.-
T Consensus 415 ~~i~l~ 420 (447)
T KOG4497|consen 415 EFIVLC 420 (447)
T ss_pred cEEEEE
Confidence 776554
No 178
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.16 E-value=4.3e-08 Score=114.95 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=162.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCcc--------ceecCCCCCCCccCceeCCC-CCEEEEEE-CCcEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKP--------ELKLSSSSCSPVIDPHLSSD-GTMIAFVR-DCELH 193 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~--------~~~l~~~~~~~~~~~~~SpD-g~~la~~~-~~~l~ 193 (776)
..+....|+| ||++|+.. .++.|.+||+.+... ...+.. ...+....|+|. +..||... ++.|.
T Consensus 484 ~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 484 NLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4578899999 99998876 678899999764211 101111 123567899874 66666554 45799
Q ss_pred EEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 194 VLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 194 ~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
+||+.+++.......... .+..+.|+| |+..|+..+.+
T Consensus 559 lWd~~~~~~~~~~~~H~~-----------------~V~~l~~~p~~~~~L~Sgs~D------------------------ 597 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEK-----------------RVWSIDYSSADPTLLASGSDD------------------------ 597 (793)
T ss_pred EEECCCCeEEEEecCCCC-----------------CEEEEEEcCCCCCEEEEEcCC------------------------
Confidence 999998765433222111 145788997 67777665533
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEec-cCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
..|.+||+.++..... ......+..+.|+ ++|+.++..+ .+..|++||+.++..
T Consensus 598 ------------g~v~iWd~~~~~~~~~---------~~~~~~v~~v~~~~~~g~~latgs----~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 598 ------------GSVKLWSINQGVSIGT---------IKTKANICCVQFPSESGRSLAFGS----ADHKVYYYDLRNPKL 652 (793)
T ss_pred ------------CEEEEEECCCCcEEEE---------EecCCCeEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCCc
Confidence 3589999987764322 1122346678885 5688777665 456799999977542
Q ss_pred --EEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC-------ceeeccccCCeEEEEEEeec
Q 004067 352 --KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-------TCLGPITEGDWMVEQIVGVN 422 (776)
Q Consensus 352 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-------~~~~~lt~~~~~~~~~~~~s 422 (776)
..+..+...... +.+.++..++++..++ .|.+||+.. .....++.+...+. ...|+
T Consensus 653 ~~~~~~~h~~~V~~------------v~f~~~~~lvs~s~D~--~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~-~v~~s 717 (793)
T PLN00181 653 PLCTMIGHSKTVSY------------VRFVDSSTLVSSSTDN--TLKLWDLSMSISGINETPLHSFMGHTNVKN-FVGLS 717 (793)
T ss_pred cceEecCCCCCEEE------------EEEeCCCEEEEEECCC--EEEEEeCCCCccccCCcceEEEcCCCCCee-EEEEc
Confidence 233333222111 1222344566666666 788888753 23445555443333 34589
Q ss_pred CCCcEEEEEEccCCCceeeEEEEEeCC-------CCCCcccccee--ecC-CCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 423 EASGQVYFTGTLDGPLESHLYCAKLYP-------DWNHTLEAPVK--LTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~~~~~l~~~~~~~-------~g~~~~~~~~~--l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
+++++|+..+ .++ .+.+|...... ... ..... +.. ...+..+.|+|+++.|+...+. +.|
T Consensus 718 ~~~~~lasgs-~D~--~v~iw~~~~~~~~~s~~~~~~---~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d----G~I 787 (793)
T PLN00181 718 VSDGYIATGS-ETN--EVFVYHKAFPMPVLSYKFKTI---DPVSGLEVDDASQFISSVCWRGQSSTLVAANST----GNI 787 (793)
T ss_pred CCCCEEEEEe-CCC--EEEEEECCCCCceEEEecccC---CcccccccCCCCcEEEEEEEcCCCCeEEEecCC----CcE
Confidence 9998544444 443 36777654210 000 00101 111 1236678999999987766543 347
Q ss_pred EEEEc
Q 004067 493 LLCSL 497 (776)
Q Consensus 493 ~~~~~ 497 (776)
.+++.
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 77663
No 179
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.15 E-value=4e-10 Score=117.48 Aligned_cols=189 Identities=18% Similarity=0.197 Sum_probs=100.3
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh----h--hhh-------h-------
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF----E--ASI-------K------- 611 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~----~--~~~-------~------- 611 (776)
.++|+|||-||..++.. .+..++..||++||+|+++|.|.......-. . ... .
T Consensus 98 ~~~PvvIFSHGlgg~R~-------~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRT-------SYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLR 170 (379)
T ss_dssp S-EEEEEEE--TT--TT-------TTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE--
T ss_pred CCCCEEEEeCCCCcchh-------hHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccc
Confidence 57999999999877654 3345688999999999999999542211000 0 000 0
Q ss_pred -----------hccCCccHHHHHHHHHHHHHc--------------------CCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 612 -----------HNCGRIDAEDQLTGAEWLIKQ--------------------GLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 612 -----------~~~~~~~~~D~~~~i~~l~~~--------------------~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
...-.....|+..+++.|.+. ..+|.++|+++|||+||..++.++.+.
T Consensus 171 ~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d- 249 (379)
T PF03403_consen 171 DFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD- 249 (379)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-
Confidence 000001245667777777531 235678999999999999999888875
Q ss_pred CceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
.+|+++|++.|... |... ....+++.|+|+|+.+. .. ...+...+. .+....
T Consensus 250 ~r~~~~I~LD~W~~---------------Pl~~----------~~~~~i~~P~L~InSe~-f~-~~~~~~~~~-~~~~~~ 301 (379)
T PF03403_consen 250 TRFKAGILLDPWMF---------------PLGD----------EIYSKIPQPLLFINSES-FQ-WWENIFRMK-KVISNN 301 (379)
T ss_dssp TT--EEEEES---T---------------TS-G----------GGGGG--S-EEEEEETT-T---HHHHHHHH-TT--TT
T ss_pred cCcceEEEeCCccc---------------CCCc----------ccccCCCCCEEEEECcc-cC-ChhhHHHHH-HHhccC
Confidence 66899999876521 1110 11255778999998765 32 223333332 344455
Q ss_pred CCeEEEEecCCCCCC-C-----CC------------Cc----HHHHHHHHHHHHHHhC
Q 004067 741 KPYEILIFPDERHMP-R-----RH------------RD----RIYMEERIWEFIERTL 776 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~-~-----~~------------~~----~~~~~~~~~~fl~~~l 776 (776)
....++.+.|..|.- . .+ .+ .....+..++||++||
T Consensus 302 ~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L 359 (379)
T PF03403_consen 302 KESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHL 359 (379)
T ss_dssp S-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999972 0 11 01 2445677888888874
No 180
>PTZ00420 coronin; Provisional
Probab=99.14 E-value=8.2e-08 Score=104.43 Aligned_cols=249 Identities=8% Similarity=0.027 Sum_probs=146.1
Q ss_pred eeEcCCCCEEEEEeCCC-CcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 60 IGFSPDDNLITYLLSPD-HSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~-~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++..++++|...... |.....|.+|+....... .+..| ...+....|+|
T Consensus 32 ~~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH------------------------~~~V~~lafsP--- 84 (568)
T PTZ00420 32 CGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGH------------------------TSSILDLQFNP--- 84 (568)
T ss_pred eeEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCC------------------------CCCEEEEEEcC---
Confidence 34566778888776532 222346777776544332 22222 24788999999
Q ss_pred C-ceEEEEe-CCCcEEEEeCCCCcc--c------eecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEE
Q 004067 138 K-KKIIMVP-LPDGIYFQDLSCSKP--E------LKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQL 205 (776)
Q Consensus 138 d-g~~l~~~-~~~~l~~~d~~~~~~--~------~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~l 205 (776)
+ +..|+.. .++.|.+||+.++.. . ..+..+. ..+....|+|++..++.+. ++.|.+||+.+++....
T Consensus 85 ~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~-~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~ 163 (568)
T PTZ00420 85 CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK-KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ 163 (568)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC-CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 8 5666654 788999999975421 1 0222222 3478899999999876543 56799999998875322
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...+. .+..+.|+|||+.|+....+ .
T Consensus 164 i~~~~------------------~V~SlswspdG~lLat~s~D------------------------------------~ 189 (568)
T PTZ00420 164 INMPK------------------KLSSLKWNIKGNLLSGTCVG------------------------------------K 189 (568)
T ss_pred EecCC------------------cEEEEEECCCCCEEEEEecC------------------------------------C
Confidence 11111 14578899999988765432 3
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcc-----eEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEecc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEE-----YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVEEL 359 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~ 359 (776)
.|.+||+.+++...- . ..+.+ .+....|++|++.|+.+.........|.+||+.. +..........
T Consensus 190 ~IrIwD~Rsg~~i~t-l-------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 190 HMHIIDPRKQEIASS-F-------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred EEEEEECCCCcEEEE-E-------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 589999998875432 1 12222 1223356799887776654433445799999984 43332222211
Q ss_pred CceeecccccccCCCCcccc-CCe-EEEEeccCCceEEEEEeCCCceeecccc
Q 004067 360 DSWVNLHDCFTPLDKGVTKY-SGG-FIWASEKTGFRHLYLHDINGTCLGPITE 410 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt~ 410 (776)
... ...| .++ +.+ ++.+...++ .|++|++..+....|+.
T Consensus 262 ~~~-----~L~p-----~~D~~tg~l~lsGkGD~--tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 262 ASA-----PLIP-----HYDESTGLIYLIGKGDG--NCRYYQHSLGSIRKVNE 302 (568)
T ss_pred Ccc-----ceEE-----eeeCCCCCEEEEEECCC--eEEEEEccCCcEEeecc
Confidence 101 0111 111 223 444444455 88888876665555543
No 181
>PTZ00421 coronin; Provisional
Probab=99.14 E-value=3e-08 Score=107.24 Aligned_cols=162 Identities=11% Similarity=0.130 Sum_probs=105.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCcc-------ceecCCCCCCCccCceeCCCCC-EEEEEE-CCcEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKP-------ELKLSSSSCSPVIDPHLSSDGT-MIAFVR-DCELHV 194 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~-------~~~l~~~~~~~~~~~~~SpDg~-~la~~~-~~~l~~ 194 (776)
..+..+.|+| .|++.|+.. .++.|.+||+.++.. ...+..+. ..+..+.|+|++. .|+..+ ++.|.+
T Consensus 76 ~~V~~v~fsP--~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 76 GPIIDVAFNP--FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-KKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCEEEEEEcC--CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-CcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 4688999998 245666655 788999999976532 11333333 3477899999875 555444 457999
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
||+.+++.......... .+..+.|+|||+.|+..+.|
T Consensus 153 WDl~tg~~~~~l~~h~~-----------------~V~sla~spdG~lLatgs~D-------------------------- 189 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSD-----------------QITSLEWNLDGSLLCTTSKD-------------------------- 189 (493)
T ss_pred EECCCCeEEEEEcCCCC-----------------ceEEEEEECCCCEEEEecCC--------------------------
Confidence 99998865433221111 14578899999988876643
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCc-ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDE-EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
..|.+||+.+++...- . ..+. .....+.|++++..++........+..|.+||+.+..
T Consensus 190 ----------g~IrIwD~rsg~~v~t-l-------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 190 ----------KKLNIIDPRDGTIVSS-V-------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred ----------CEEEEEECCCCcEEEE-E-------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 3589999988775332 1 1222 2234678999987665443222345679999997644
No 182
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1e-09 Score=103.61 Aligned_cols=265 Identities=13% Similarity=0.075 Sum_probs=165.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+...+|||||++++--+. .+-|-+||-.+|+.+.=..-+. .+.+. -....+....||.
T Consensus 216 ~EcA~FSPDgqyLvsgSv-----DGFiEVWny~~GKlrKDLkYQA----------qd~fM-----Mmd~aVlci~FSR-- 273 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSV-----DGFIEVWNYTTGKLRKDLKYQA----------QDNFM-----MMDDAVLCISFSR-- 273 (508)
T ss_pred hhheeeCCCCceEeeccc-----cceeeeehhccchhhhhhhhhh----------hccee-----ecccceEEEeecc--
Confidence 457799999999984433 3458899999988643221000 00000 0123577889999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
|..-|+.. .+++|.+|.+.+|...+++.......+....||.|+..|+..+..+ +.+..+++|+...-
T Consensus 274 -DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE--------- 343 (508)
T KOG0275|consen 274 -DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE--------- 343 (508)
T ss_pred -cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH---------
Confidence 99999876 8899999999999876455433323478899999999998877654 66667777765322
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
..|..++ +....|++||..|+..+.| ..+.+|+.++
T Consensus 344 frGHsSy--------vn~a~ft~dG~~iisaSsD------------------------------------gtvkvW~~Kt 379 (508)
T KOG0275|consen 344 FRGHSSY--------VNEATFTDDGHHIISASSD------------------------------------GTVKVWHGKT 379 (508)
T ss_pred hcCcccc--------ccceEEcCCCCeEEEecCC------------------------------------ccEEEecCcc
Confidence 1223333 3356799999999987754 3478999988
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC--ceeecccccccC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD--SWVNLHDCFTPL 372 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~--~~~~~~~~~~~~ 372 (776)
++...---+ .+.+..+..+-.-|.+---+.+.||. ..+|++++.+.-++..+...-. .++ ....+|.
T Consensus 380 teC~~Tfk~------~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQvVrsfsSGkREgGdFi--~~~lSpk 448 (508)
T KOG0275|consen 380 TECLSTFKP------LGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQVVRSFSSGKREGGDFI--NAILSPK 448 (508)
T ss_pred hhhhhhccC------CCCcccceeEEEcCCCCceEEEEcCC---CeEEEEeccceEEeeeccCCccCCceE--EEEecCC
Confidence 875332111 23445566667777654333444544 4699999987666666554322 222 2233332
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeC-CCceeeccccCCeEEEEE
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDI-NGTCLGPITEGDWMVEQI 418 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~-~g~~~~~lt~~~~~~~~~ 418 (776)
+.++|...+++ .+|-+.. .|+-.+.+.-++..+.++
T Consensus 449 --------GewiYcigED~--vlYCF~~~sG~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 449 --------GEWIYCIGEDG--VLYCFSVLSGKLERTLPVHEKDVIGL 485 (508)
T ss_pred --------CcEEEEEccCc--EEEEEEeecCceeeeeeccccccccc
Confidence 23455555566 7777774 455556666555544444
No 183
>PTZ00421 coronin; Provisional
Probab=99.13 E-value=1.9e-08 Score=108.72 Aligned_cols=207 Identities=8% Similarity=0.001 Sum_probs=133.6
Q ss_pred CCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCce--------EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 004067 57 PTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQ--------ELVFSPPDGGLDENNISPEEKLRRERLRERGLGV 127 (776)
Q Consensus 57 ~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~--------~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (776)
+..++||| |++.|+..+.+ ..|.+||+.++.. ..+.. +...+
T Consensus 78 V~~v~fsP~d~~~LaSgS~D-----gtIkIWdi~~~~~~~~~~~~l~~L~g------------------------H~~~V 128 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASED-----GTIMGWGIPEEGLTQNISDPIVHLQG------------------------HTKKV 128 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCC-----CEEEEEecCCCccccccCcceEEecC------------------------CCCcE
Confidence 57899999 89988865542 4699999876532 11221 12468
Q ss_pred eeEEEeecCCCce-EEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 128 TRYEWVKTSSKKK-IIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 128 ~~~~~sp~~~dg~-~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
....|+| ++. .|+. ..++.|.+||+.+++....+..... .+..+.|+|||+.|+..+. +.|.+||+.+++...
T Consensus 129 ~~l~f~P---~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 129 GIVSFHP---SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred EEEEeCc---CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 8899999 874 4554 3688899999998876634443333 4788999999999888764 579999999886533
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
-.....+. ......|+|++..|+....+... .
T Consensus 205 tl~~H~~~----------------~~~~~~w~~~~~~ivt~G~s~s~--------------------------------D 236 (493)
T PTZ00421 205 SVEAHASA----------------KSQRCLWAKRKDLIITLGCSKSQ--------------------------------Q 236 (493)
T ss_pred EEecCCCC----------------cceEEEEcCCCCeEEEEecCCCC--------------------------------C
Confidence 22111110 01246699998877655432111 1
Q ss_pred EEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 285 VRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 285 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
.+|.+||+.... ...... ......+..+.|++|++.++.... .+..|.+||+.+++....
T Consensus 237 r~VklWDlr~~~~p~~~~~-------~d~~~~~~~~~~d~d~~~L~lggk---gDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 237 RQIMLWDTRKMASPYSTVD-------LDQSSALFIPFFDEDTNLLYIGSK---GEGNIRCFELMNERLTFC 297 (493)
T ss_pred CeEEEEeCCCCCCceeEec-------cCCCCceEEEEEcCCCCEEEEEEe---CCCeEEEEEeeCCceEEE
Confidence 458899987543 221110 122234556789999997766542 355799999988775443
No 184
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.2e-07 Score=90.44 Aligned_cols=245 Identities=13% Similarity=0.090 Sum_probs=154.9
Q ss_pred CccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCC-CCCceecCCcccceecccCCcceEEECCCCCeEEEEEec
Q 004067 171 PVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGA-NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
.+..+.||+||..++..+.+ .|.++|..+|......... .+ +....|.-....+++.+.-
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG------------------~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG------------------VDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc------------------ccEEEEecCCceEEEccCC
Confidence 57889999999999886665 6999999988655443322 11 2234465566667665531
Q ss_pred CCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEE
Q 004067 249 SSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILT 328 (776)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l 328 (776)
. ...|+..++.+++-.+. +.+|...+..++-||-+...
T Consensus 78 ~----------------------------------d~tIryLsl~dNkylRY--------F~GH~~~V~sL~~sP~~d~F 115 (311)
T KOG1446|consen 78 E----------------------------------DDTIRYLSLHDNKYLRY--------FPGHKKRVNSLSVSPKDDTF 115 (311)
T ss_pred C----------------------------------CCceEEEEeecCceEEE--------cCCCCceEEEEEecCCCCeE
Confidence 1 03467777777765544 26788889999999977755
Q ss_pred EEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCC---Ccee
Q 004067 329 AQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN---GTCL 405 (776)
Q Consensus 329 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~---g~~~ 405 (776)
+..+ .+..|.+||+...+.+-+..-... |. .+.|+.+++|+...++. .|.++|+. .|..
T Consensus 116 lS~S----~D~tvrLWDlR~~~cqg~l~~~~~----------pi---~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 116 LSSS----LDKTVRLWDLRVKKCQGLLNLSGR----------PI---AAFDPEGLIFALANGSE-LIKLYDLRSFDKGPF 177 (311)
T ss_pred Eecc----cCCeEEeeEecCCCCceEEecCCC----------cc---eeECCCCcEEEEecCCC-eEEEEEecccCCCCc
Confidence 5554 456799999998777666543322 11 15566777776644332 78888853 3333
Q ss_pred ec--cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC----eEEEEEcCCcCEE
Q 004067 406 GP--ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG----KHVAVLDHNMRNF 479 (776)
Q Consensus 406 ~~--lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~----~~~~~~spdg~~l 479 (776)
+. ++..+.....-+.||+|||.|+.+.+. ..++.++.- +|. ....++.... ...+.|+|||+.+
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-----s~~~~lDAf-~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNA-----SFIYLLDAF-DGT----VKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEeCC-----CcEEEEEcc-CCc----EeeeEeeccCCCCcceeEEECCCCcEE
Confidence 32 332222233445699999998888765 246667654 454 2333332221 2467999999866
Q ss_pred EEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 480 VDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 480 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
+-... . +.|.+|+..+|..+..+.
T Consensus 248 l~gs~-d---g~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 248 LSGSD-D---GTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EEecC-C---CcEEEEEcCCCcEeeEec
Confidence 65543 2 359999999998755443
No 185
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=3.4e-09 Score=100.17 Aligned_cols=141 Identities=13% Similarity=0.204 Sum_probs=96.9
Q ss_pred CceeEcCCCCEEEEEeCCC--C-----cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 58 TSIGFSPDDNLITYLLSPD--H-----SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~--~-----~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
..+.|+|+|++|+.....+ . .+..+||.++..+.....+.-.. ...+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-----------------------~~~I~~~ 65 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-----------------------EGPIHDV 65 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-----------------------CCceEEE
Confidence 4678999999999887621 1 12358888887766654443211 1248999
Q ss_pred EEeecCCCceEEEEe---CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEecCCCcee
Q 004067 131 EWVKTSSKKKIIMVP---LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLLINEQR 203 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~---~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~~g~~~ 203 (776)
.|+| +|+.+++. .+..+.++|+.+.... .+.. .....+.|||+|+.|++..- ++|.+||+.+.+..
T Consensus 66 ~WsP---~g~~favi~g~~~~~v~lyd~~~~~i~-~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 66 AWSP---NGNEFAVIYGSMPAKVTLYDVKGKKIF-SFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred EECc---CCCEEEEEEccCCcccEEEcCcccEeE-eecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 9999 99998876 3457899999744443 4432 23567899999999999863 46899999855443
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
....... ...+.|||||++|+....
T Consensus 139 ~~~~~~~-------------------~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 139 STFEHSD-------------------ATDVEWSPDGRYLATATT 163 (194)
T ss_pred eccccCc-------------------EEEEEEcCCCCEEEEEEe
Confidence 2221111 236789999999998764
No 186
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.3e-08 Score=98.13 Aligned_cols=320 Identities=13% Similarity=0.084 Sum_probs=172.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+-++|||-|.+|+-.-.++ |-+| ||+. .++ .+=.+.++.-..|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G------I~lW---GG~~f~r~-----------------------~RF~Hp~Vq~idfSP-- 259 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG------IALW---GGESFDRI-----------------------QRFYHPGVQFIDFSP-- 259 (698)
T ss_pred eeEEecCCceEEEEEeccc------eeee---cCccHHHH-----------------------HhccCCCceeeecCC--
Confidence 5789999999998654432 4444 3432 111 111246788888999
Q ss_pred CCceEEEEe------------CCCcEEEEeCCCCccceecCC--CCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce
Q 004067 137 SKKKIIMVP------------LPDGIYFQDLSCSKPELKLSS--SSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ 202 (776)
Q Consensus 137 ~dg~~l~~~------------~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~ 202 (776)
.-++|+.- ...+|.+||+.+|...+.+.. .+...---++||-|++++|-...+.|.++.... .
T Consensus 260 -~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps--f 336 (698)
T KOG2314|consen 260 -NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS--F 336 (698)
T ss_pred -ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc--e
Confidence 99998843 225699999999988733322 121112246999999999998887777775432 2
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
..+-.. .-...| +..+.|||-+.-|||........+
T Consensus 337 ~lld~K---slki~g------------Ir~FswsP~~~llAYwtpe~~~~p----------------------------- 372 (698)
T KOG2314|consen 337 MLLDKK---SLKISG------------IRDFSWSPTSNLLAYWTPETNNIP----------------------------- 372 (698)
T ss_pred eeeccc---ccCCcc------------ccCcccCCCcceEEEEcccccCCc-----------------------------
Confidence 222111 111222 457889999999999874433211
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCc--------eEEEEEEECCCCceEEE
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT--------KLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~l~~~d~~~g~~~~l 354 (776)
..+-+..+-+++..+.. .-..-..-.+.|-..|++|.+-..|..+ +.+|++++-+. -+...
T Consensus 373 --arvtL~evPs~~~iRt~--------nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~ 441 (698)
T KOG2314|consen 373 --ARVTLMEVPSKREIRTK--------NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEV 441 (698)
T ss_pred --ceEEEEecCccceeeec--------cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCcee
Confidence 22233333333221110 0111223357899999977766555422 22444444221 11111
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEE--EEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHL--YLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l--~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+-.+.. ....|.| .++++..++......++ |.+...+++++.+..-+....+-+.|||.|+.+++.+
T Consensus 442 velke~v---i~FaWEP-------~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 442 VELKESV---IAFAWEP-------HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred eecchhe---eeeeecc-------CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEE
Confidence 1111110 0011112 24557777655444444 4444445555555444433334456999999988876
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
-.... ..|+-++++-.. ........+.....+.|.|.|++++..++.
T Consensus 512 l~s~~--g~l~F~D~~~a~----~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 512 LVSRR--GDLEFYDTDYAD----LKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ecccc--cceEEEecchhh----hhhccCccccccccceECCCCCEEEEeeeh
Confidence 54322 244444441000 112222223345567999999988876653
No 187
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.10 E-value=2.9e-09 Score=98.66 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=102.3
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHHhCC--cEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|+++||..++.. ......+.+++++.+ ..+.+++++-. ..+..+.++.+++..
T Consensus 2 ilYlHGF~Ssp~-----S~Ka~~l~~~~~~~~~~~~~~~p~l~~~-------------------p~~a~~~l~~~i~~~- 56 (187)
T PF05728_consen 2 ILYLHGFNSSPQ-----SFKAQALKQYFAEHGPDIQYPCPDLPPF-------------------PEEAIAQLEQLIEEL- 56 (187)
T ss_pred eEEecCCCCCCC-----CHHHHHHHHHHHHhCCCceEECCCCCcC-------------------HHHHHHHHHHHHHhC-
Confidence 799999655432 112233456777765 45677776511 334445555555543
Q ss_pred CCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc-cccccccccccc---CCCCC-CccchhcCChhhhh-cc
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-DGYDTFYTEKYM---GLPSE-DPVGYEYSSVMHHV-HK 708 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~-~~ 708 (776)
..+.+.|+|.||||+.|.+++.+++ +++ |+++|.... ..+.....+... +.... ....+.....+... ..
T Consensus 57 -~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~ 132 (187)
T PF05728_consen 57 -KPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPT 132 (187)
T ss_pred -CCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccC
Confidence 2345999999999999999999875 344 666776553 222221111100 00000 00111111111111 12
Q ss_pred CCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 709 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 709 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
-..++++++++.|+++++..+...++. +..++.+|++|.+. +.++....+.+|+
T Consensus 133 ~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~---~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQ---DFEEYLPQIIAFL 186 (187)
T ss_pred CCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCc---cHHHHHHHHHHhh
Confidence 235899999999999998666555442 24556788899884 4677788888887
No 188
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.10 E-value=1e-09 Score=120.37 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=139.3
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+-++|||||+++|.-+++ .-|.+|..+..-...++.......+..++.. ..+.+.+...+.+..|+|
T Consensus 73 ~CVR~S~dG~~lAsGSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-----~~~l~~H~~DV~Dv~Wsp--- 139 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKV-----VSILRGHDSDVLDVNWSP--- 139 (942)
T ss_pred eEEEECCCCCeEeeccCc-----ceEEEeeecccCCcccccccccccccceeeE-----EEEEecCCCccceeccCC---
Confidence 567899999999976553 3466666653111111110000000011100 001122345688999999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCC-CceeEEeeCCCCCce
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI-NEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~-g~~~~lt~~~~~~~~ 214 (776)
|+..++.. .++.|.+||..+.+.. ....+....+....|-|-|+++|..+++ -|-+|+..+ |-.+.++..-+....
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CccEEEEecccceEEEEccccceee-eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 99999976 7889999999998665 4433333458899999999999999875 477777443 445555432111100
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEe-cCC---------CCCeEEEeecCCCCCCCCCcceecCC-----C--
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV-DSS---------EIPRFRIMHQGKSSVGSEAQEDHAYP-----F-- 277 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-- 277 (776)
. -.+..+.|||||+.|+.... +++ +.+...+.+.|+.. ...-++|- .
T Consensus 219 ~------------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~----p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 219 T------------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA----PVEVVRFNPKLFERNN 282 (942)
T ss_pred c------------ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC----ceEEEEeChHHhcccc
Confidence 0 01457889999999987542 221 23344455555553 11111111 1
Q ss_pred -CCCCC-------------CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 278 -AGASN-------------VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 278 -~g~~~-------------~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
.|... -...|-||.....++-.+-. .-....+.+++|||||-.|+..+. ++.|+.
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~-------~lf~~SI~DmsWspdG~~LfacS~----DGtV~~ 351 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH-------NLFNKSIVDMSWSPDGFSLFACSL----DGTVAL 351 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-------hhhcCceeeeeEcCCCCeEEEEec----CCeEEE
Confidence 11110 01124444443322211100 112457889999999987777763 445666
Q ss_pred EECCCCc
Q 004067 344 FDIKTGQ 350 (776)
Q Consensus 344 ~d~~~g~ 350 (776)
+..+.++
T Consensus 352 i~Fee~E 358 (942)
T KOG0973|consen 352 IHFEEKE 358 (942)
T ss_pred EEcchHH
Confidence 6665443
No 189
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.09 E-value=2.8e-09 Score=104.15 Aligned_cols=277 Identities=11% Similarity=0.108 Sum_probs=170.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++|+|+|++|..-+. . +.+-+|+..+-.-+.+. ..+...|....||+
T Consensus 99 V~~v~WtPeGRRLltgs~-S----GEFtLWNg~~fnFEtil-----------------------QaHDs~Vr~m~ws~-- 148 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQ-S----GEFTLWNGTSFNFETIL-----------------------QAHDSPVRTMKWSH-- 148 (464)
T ss_pred eeeEEEcCCCceeEeecc-c----ccEEEecCceeeHHHHh-----------------------hhhcccceeEEEcc--
Confidence 468899999999985444 2 34666775333222221 12334688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCc-eeEEeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINE-QRQLTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~-~~~lt~~~~~~~ 213 (776)
+|.+++.. .++.|..|+..-...+ .+.......+..++|||...+.+-.++ +.|-+||..-.. .++| ....
T Consensus 149 -~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHg--- 222 (464)
T KOG0284|consen 149 -NGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHG--- 222 (464)
T ss_pred -CCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCC---
Confidence 99999987 5677889988776666 444444335889999996665555554 568888877554 3444 3222
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
|. +..+.|.|.-..|+..+.| .-+.+||..
T Consensus 223 -------wd-------VksvdWHP~kgLiasgskD------------------------------------nlVKlWDpr 252 (464)
T KOG0284|consen 223 -------WD-------VKSVDWHPTKGLIASGSKD------------------------------------NLVKLWDPR 252 (464)
T ss_pred -------CC-------cceeccCCccceeEEccCC------------------------------------ceeEeecCC
Confidence 11 5678899976655544432 247899999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEeccCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~ 372 (776)
+|....- +-.+...+..+.|+|+|.+|+..+ .+..+.++|+.+ .+.+..-.+....+.. .|.|.
T Consensus 253 Sg~cl~t--------lh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~---~WhP~ 317 (464)
T KOG0284|consen 253 SGSCLAT--------LHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMKELFTYRGHKKDVTSL---TWHPL 317 (464)
T ss_pred Ccchhhh--------hhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhHHHHHhhcchhhheee---ccccc
Confidence 8875332 145667889999999998887665 556788999874 2233333333332221 12332
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCceeec-ccc-CCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~-~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
-. +++.+...+| .|+.|.+...++.. +.. ++..+.++. |.|=|- |+.+++.+.. ...|.-+.
T Consensus 318 ~~-------~lftsgg~Dg--svvh~~v~~~~p~~~i~~AHd~~iwsl~-~hPlGh-il~tgsnd~t--~rfw~r~r 381 (464)
T KOG0284|consen 318 NE-------SLFTSGGSDG--SVVHWVVGLEEPLGEIPPAHDGEIWSLA-YHPLGH-ILATGSNDRT--VRFWTRNR 381 (464)
T ss_pred cc-------cceeeccCCC--ceEEEeccccccccCCCcccccceeeee-ccccce-eEeecCCCcc--eeeeccCC
Confidence 21 1333333455 66667665433322 222 244566654 888876 5666555443 67777765
No 190
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.08 E-value=4.5e-09 Score=111.52 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=145.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+.+||||-+.|.--+++ ..+.+|.+++-....+.. .+...+-...|+|
T Consensus 454 Vyg~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~-----------------------GH~~PVwdV~F~P-- 503 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYK-----------------------GHLAPVWDVQFAP-- 503 (707)
T ss_pred eeeeeecccccceeeccCC-----cceeeeecccceeEEEec-----------------------CCCcceeeEEecC--
Confidence 6788999999999855442 468888988776544443 1124566788999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
-|-++|.. .|..--+|..+...+. ++..+.-..+....|.|++.++|--+.. -+.+||+.+|...++..+..
T Consensus 504 -~GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~---- 577 (707)
T KOG0263|consen 504 -RGYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK---- 577 (707)
T ss_pred -CceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC----
Confidence 89888876 4555667777776666 5555555568889999999998887544 59999999999888865432
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+++.++++||+|++|+....+ ..|.+||+.+
T Consensus 578 -------------~~V~al~~Sp~Gr~LaSg~ed------------------------------------~~I~iWDl~~ 608 (707)
T KOG0263|consen 578 -------------GPVTALAFSPCGRYLASGDED------------------------------------GLIKIWDLAN 608 (707)
T ss_pred -------------CceEEEEEcCCCceEeecccC------------------------------------CcEEEEEcCC
Confidence 236689999999999876533 4589999999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
|+.... +.++.+.+..++||.||.+|+... .+..|.+||+..
T Consensus 609 ~~~v~~--------l~~Ht~ti~SlsFS~dg~vLasgg----~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 609 GSLVKQ--------LKGHTGTIYSLSFSRDGNVLASGG----ADNSVRLWDLTK 650 (707)
T ss_pred Ccchhh--------hhcccCceeEEEEecCCCEEEecC----CCCeEEEEEchh
Confidence 876543 256778899999999999887665 566788899754
No 191
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.07 E-value=1.9e-09 Score=106.62 Aligned_cols=244 Identities=15% Similarity=0.128 Sum_probs=147.1
Q ss_pred CCCceEEEEEcC---CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccc-------ccccchhhhHHHHhCCcE
Q 004067 521 LEPPDIVQIQAN---DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS-------WINTVDMRAQYLRSKGIL 590 (776)
Q Consensus 521 ~~~~~~~~~~~~---dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~-------~~~~~~~~~~~l~~~G~~ 590 (776)
+...+.+.++.. ++..+.+..|.-.+. .+-.+||++|+..++..+... |...+-.--+.+.-..|-
T Consensus 19 ~~~~~~l~le~G~~l~~~~vay~T~Gtln~----~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~f 94 (368)
T COG2021 19 LFAIGPLTLESGGVLSDARVAYETYGTLNA----EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFF 94 (368)
T ss_pred eeccCceeecCCCcccCcEEEEEecccccc----cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceE
Confidence 334444555541 234566666665443 355799999997776554442 322111112234456699
Q ss_pred EEEECCCCCC-CC-chhhhhhhh----hccCCccHHHHHHHHHHHHHcCCCCCCcEE-EEeechHHHHHHHHHhhCCCce
Q 004067 591 VWKLDNRGTA-RR-GLKFEASIK----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVF 663 (776)
Q Consensus 591 v~~~d~rg~g-~~-~~~~~~~~~----~~~~~~~~~D~~~~i~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~~~~~ 663 (776)
|++.|..|+. ++ +.......- ..+....+.|.+++-+.|+++-.|. ++. ++|.||||+.++.++..+|+++
T Consensus 95 vIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~--~l~avvGgSmGGMqaleWa~~yPd~V 172 (368)
T COG2021 95 VICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDALGIK--KLAAVVGGSMGGMQALEWAIRYPDRV 172 (368)
T ss_pred EEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhcCcc--eEeeeeccChHHHHHHHHHHhChHHH
Confidence 9999998864 33 222111111 1233457889999998888876554 555 9999999999999999999999
Q ss_pred EEEEEcCCCCC---------------------cc---ccc----------------------ccccccccC----CC---
Q 004067 664 QCAVSGAPVTS---------------------WD---GYD----------------------TFYTEKYMG----LP--- 690 (776)
Q Consensus 664 ~~~v~~~~~~~---------------------~~---~~~----------------------~~~~~~~~~----~~--- 690 (776)
..++.++...- |. ++. ..+.+++.. .+
T Consensus 173 ~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~ 252 (368)
T COG2021 173 RRAIPIATAARLSAQNIAFNEVQRQAIEADPDWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRG 252 (368)
T ss_pred hhhheecccccCCHHHHHHHHHHHHHHHhCCCccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCC
Confidence 88877665321 10 000 001111111 00
Q ss_pred ---CCCccc------------h------------hc-------CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHH
Q 004067 691 ---SEDPVG------------Y------------EY-------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 736 (776)
Q Consensus 691 ---~~~~~~------------~------------~~-------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l 736 (776)
....+. + .. .+....+++++.|+|++.-+.|...|++...++.+.|
T Consensus 253 ~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L 332 (368)
T COG2021 253 GGVRFAVESYLDYQGDKFVARFDANSYLYLTRALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEAL 332 (368)
T ss_pred CchhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhc
Confidence 000000 0 01 1223347788999999999999999999999999999
Q ss_pred HHCCCCeEEEEe-cCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 737 VAARKPYEILIF-PDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 737 ~~~~~~~~~~~~-~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
...+. ++++ ...||.- +......+...+.+||+.
T Consensus 333 ~~~~~---~~~i~S~~GHDa-FL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 333 PAAGA---LREIDSPYGHDA-FLVESEAVGPLIRKFLAL 367 (368)
T ss_pred cccCc---eEEecCCCCchh-hhcchhhhhHHHHHHhhc
Confidence 76655 4333 4568864 333445566888888764
No 192
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.07 E-value=2.4e-09 Score=127.83 Aligned_cols=221 Identities=14% Similarity=0.057 Sum_probs=129.1
Q ss_pred EEEEEEEcCCCCCCC-CCCceEEEEEcCCCCccccccccccc-chhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc
Q 004067 536 VLYGALYKPDESRYG-PPPYKTLISVYGGPCVQLVCDSWINT-VDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 613 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~-~~~~p~vl~~HG~~~~~~~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~ 613 (776)
.+..+.|.|.....+ ++..|.||++||.+.... .|... -..+..+|.++||.|+++|+ |.++.... .
T Consensus 48 ~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~---~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~---~-- 116 (994)
T PRK07868 48 MYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSAD---MWDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEG---G-- 116 (994)
T ss_pred cEEEEEeCCCCccccccCCCCcEEEECCCCCCcc---ceecCCcccHHHHHHHCCCEEEEEcC---CCCChhHc---C--
Confidence 366667777653111 123478999999766544 23211 01136789999999999995 33332110 0
Q ss_pred cCCccHHH----HHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC-CCceEEEEEcCCCCCccc-----------
Q 004067 614 CGRIDAED----QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG----------- 677 (776)
Q Consensus 614 ~~~~~~~D----~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-~~~~~~~v~~~~~~~~~~----------- 677 (776)
....+.| +.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+++.+...++..
T Consensus 117 -~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~ 192 (994)
T PRK07868 117 -MERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLA 192 (994)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhh
Confidence 0112333 334444443332 24799999999999998888755 557888776443322100
Q ss_pred -c---------------ccc-----c--------cccc------cCCC-----------------C-CC---------cc
Q 004067 678 -Y---------------DTF-----Y--------TEKY------MGLP-----------------S-ED---------PV 695 (776)
Q Consensus 678 -~---------------~~~-----~--------~~~~------~~~~-----------------~-~~---------~~ 695 (776)
. ... + ...+ +..+ | .. ..
T Consensus 193 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~ 272 (994)
T PRK07868 193 AAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQ 272 (994)
T ss_pred hcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHH
Confidence 0 000 0 0000 0000 0 00 00
Q ss_pred chhcCChh----------hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE-EEecCCCCCC--CCCCcHH
Q 004067 696 GYEYSSVM----------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI-LIFPDERHMP--RRHRDRI 762 (776)
Q Consensus 696 ~~~~~~~~----------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~-~~~~~~~H~~--~~~~~~~ 762 (776)
.+..+... ..+.++++|+|+++|+.|.++|+..+..+.+.+ ...++ .+++++||.. .......
T Consensus 273 ~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i----~~a~~~~~~~~~GH~g~~~g~~a~~ 348 (994)
T PRK07868 273 FIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAA----PNAEVYESLIRAGHFGLVVGSRAAQ 348 (994)
T ss_pred HHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEEeCCCCCEeeeechhhhh
Confidence 00000000 135788899999999999999999998887765 33455 5778999974 3456678
Q ss_pred HHHHHHHHHHHHh
Q 004067 763 YMEERIWEFIERT 775 (776)
Q Consensus 763 ~~~~~~~~fl~~~ 775 (776)
+++..+.+||.++
T Consensus 349 ~~wp~i~~wl~~~ 361 (994)
T PRK07868 349 QTWPTVADWVKWL 361 (994)
T ss_pred hhChHHHHHHHHh
Confidence 8999999999875
No 193
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.9e-08 Score=101.84 Aligned_cols=291 Identities=11% Similarity=0.056 Sum_probs=179.9
Q ss_pred ccChHhhhcCCCCCCcC-CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHH
Q 004067 40 LFSLEEIVQSPLPGYVA-PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRE 118 (776)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 118 (776)
..+.+.+...|.+..+- ..-+.||..+ .+|-... ..||+|+..+++...|.+...
T Consensus 162 ~~~p~rvLDaP~l~dDfY~nlldWss~n-~laValg------~~vylW~~~s~~v~~l~~~~~----------------- 217 (484)
T KOG0305|consen 162 PQTPYRVLDAPGLQDDFYLNLLDWSSAN-VLAVALG------QSVYLWSASSGSVTELCSFGE----------------- 217 (484)
T ss_pred cCChhhhccCCcccccHhhhHhhcccCC-eEEEEec------ceEEEEecCCCceEEeEecCC-----------------
Confidence 34455666655543221 2345799443 4553322 469999999999888886421
Q ss_pred HHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEe
Q 004067 119 RLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLN 196 (776)
Q Consensus 119 ~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~ 196 (776)
..+.++.|++ +|+.|++. .++.+.+||....+....+......++...+|. +..+.-.+ ++.|..+|
T Consensus 218 ------~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 218 ------ELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHD 286 (484)
T ss_pred ------CceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEE
Confidence 4688999999 99999997 778999999988776634444245568889998 32333322 34566666
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+...+..--+..+ .... +-++.|++|++++|-...|
T Consensus 287 vR~~~~~~~~~~~-H~qe---------------VCgLkws~d~~~lASGgnD---------------------------- 322 (484)
T KOG0305|consen 287 VRISQHVVSTLQG-HRQE---------------VCGLKWSPDGNQLASGGND---------------------------- 322 (484)
T ss_pred Eecchhhhhhhhc-ccce---------------eeeeEECCCCCeeccCCCc----------------------------
Confidence 6554321111111 1112 3367899999998864432
Q ss_pred CCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..+++||..+.+.. .+ ..+...+..++|+|=-+ .|+.. .+..+..|..||..+|+....
T Consensus 323 --------N~~~Iwd~~~~~p~~~~---------~~H~aAVKA~awcP~q~~lLAsG--GGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 323 --------NVVFIWDGLSPEPKFTF---------TEHTAAVKALAWCPWQSGLLATG--GGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred --------cceEeccCCCccccEEE---------eccceeeeEeeeCCCccCceEEc--CCCcccEEEEEEcCCCcEecc
Confidence 45788988444332 22 46777888999999544 55433 355788999999998875432
Q ss_pred EEeccC----ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC-ceeeccccCCeEEEEEEeecCCCcEEE
Q 004067 355 LVEELD----SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVY 429 (776)
Q Consensus 355 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~~~lt~~~~~~~~~~~~s~dg~~i~ 429 (776)
.....- .|. + ..+.++.+. .....+|-+|.... .....++.+...|..+. +||||..|+
T Consensus 384 vdtgsQVcsL~Ws-------k-------~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la-~SPdg~~i~ 447 (484)
T KOG0305|consen 384 VDTGSQVCSLIWS-------K-------KYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLA-LSPDGETIV 447 (484)
T ss_pred cccCCceeeEEEc-------C-------CCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEE-ECCCCCEEE
Confidence 221111 221 1 123344433 22233556665333 34566777777777665 999999877
Q ss_pred EEEccCCCceeeEEEEEe
Q 004067 430 FTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~ 447 (776)
..+.++. +++|.+--
T Consensus 448 t~a~DET---lrfw~~f~ 462 (484)
T KOG0305|consen 448 TGAADET---LRFWNLFD 462 (484)
T ss_pred EecccCc---EEeccccC
Confidence 6666543 78888763
No 194
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.05 E-value=1.6e-08 Score=92.97 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=115.6
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC-CCCch
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGL 604 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~-g~~~~ 604 (776)
...+...+|.++..|.-.|++. .+++.+.|++..|...... .+..++.+|+.+||+|+-+|.--| |.|..
T Consensus 4 dhvi~~~~~~~I~vwet~P~~~--~~~~~~tiliA~Gf~rrmd-------h~agLA~YL~~NGFhViRyDsl~HvGlSsG 74 (294)
T PF02273_consen 4 DHVIRLEDGRQIRVWETRPKNN--EPKRNNTILIAPGFARRMD-------HFAGLAEYLSANGFHVIRYDSLNHVGLSSG 74 (294)
T ss_dssp EEEEEETTTEEEEEEEE---TT--S---S-EEEEE-TT-GGGG-------GGHHHHHHHHTTT--EEEE---B-------
T ss_pred cceeEcCCCCEEEEeccCCCCC--CcccCCeEEEecchhHHHH-------HHHHHHHHHhhCCeEEEeccccccccCCCC
Confidence 3455667899999999999874 3456789999888543321 455678999999999999997654 43332
Q ss_pred hhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccc-ccccc
Q 004067 605 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-DTFYT 683 (776)
Q Consensus 605 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~-~~~~~ 683 (776)
.-.+..... ...++..+++|+.+.+ ..+++++.-|.-|-+|+..+++ .+ ..-+|...++.+++.. ...+.
T Consensus 75 ~I~eftms~----g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~ 145 (294)
T PF02273_consen 75 DINEFTMSI----GKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALG 145 (294)
T ss_dssp ------HHH----HHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHS
T ss_pred ChhhcchHH----hHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhc
Confidence 221111111 2578999999999764 3579999999999999999995 44 4556666688886532 11122
Q ss_pred ccccCCCCC----Cc---------cc---------hh-cCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 684 EKYMGLPSE----DP---------VG---------YE-YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 684 ~~~~~~~~~----~~---------~~---------~~-~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
..|++.+.. +. +. |. ..+....+.++.+|++.+++.+|..|......++...+. .
T Consensus 146 ~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~--s 223 (294)
T PF02273_consen 146 YDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNIN--S 223 (294)
T ss_dssp S-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-T--T
T ss_pred cchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcC--C
Confidence 222221111 00 00 10 113345677888999999999999999888888877662 3
Q ss_pred CCeEEEEecCCCCCCC
Q 004067 741 KPYEILIFPDERHMPR 756 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~ 756 (776)
..+++...+|+.|...
T Consensus 224 ~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 224 NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp --EEEEEETT-SS-TT
T ss_pred CceeEEEecCccchhh
Confidence 5688999999999873
No 195
>PTZ00420 coronin; Provisional
Probab=99.04 E-value=6.1e-08 Score=105.45 Aligned_cols=217 Identities=9% Similarity=0.071 Sum_probs=129.2
Q ss_pred CCceeEcCC-CCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 57 PTSIGFSPD-DNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 57 ~~~~~~SpD-G~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+..++|+|+ ++.||-.+. ...|.+|++.++.. ..+... . ..+ ..+...+....|+
T Consensus 77 V~~lafsP~~~~lLASgS~-----DgtIrIWDi~t~~~~~~~i~~p-~-----~~L-----------~gH~~~V~sVaf~ 134 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSE-----DLTIRVWEIPHNDESVKEIKDP-Q-----CIL-----------KGHKKKISIIDWN 134 (568)
T ss_pred EEEEEEcCCCCCEEEEEeC-----CCeEEEEECCCCCccccccccc-e-----EEe-----------ecCCCcEEEEEEC
Confidence 588999997 777775443 24699999975421 110000 0 000 0112468899999
Q ss_pred ecCCCceEEEE--eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCC
Q 004067 134 KTSSKKKIIMV--PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 134 p~~~dg~~l~~--~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~ 210 (776)
| ++..++. ..++.|.+||+.+++....+.. . ..+..+.|+|||+.|+... ++.|.+||+.+++...-.....
T Consensus 135 P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 135 P---MNYYIMCSSGFDSFVNIWDIENEKRAFQINM-P-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred C---CCCeEEEEEeCCCeEEEEECCCCcEEEEEec-C-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9 9987654 3688999999998876534432 2 2478899999999998775 5679999999887643222211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
+..... . +....|++|++.|+....+... ..+|.+|
T Consensus 210 g~~~s~--~----------v~~~~fs~d~~~IlTtG~d~~~--------------------------------~R~VkLW 245 (568)
T PTZ00420 210 GGKNTK--N----------IWIDGLGGDDNYILSTGFSKNN--------------------------------MREMKLW 245 (568)
T ss_pred CCceeE--E----------EEeeeEcCCCCEEEEEEcCCCC--------------------------------ccEEEEE
Confidence 100000 0 0012357999988876654321 1358999
Q ss_pred EcCC-CceE-EEEcccCCCCCCCCcceEEEEEeccC-CeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 291 SAAG-GPVS-WMDLQCGGTDQNYDEEYLARVNWMHG-NILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 291 d~~~-~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
|+.. ++.. .+... ...+ ...+.|.+| |.+++... ++..|++|++..+....+.+
T Consensus 246 Dlr~~~~pl~~~~ld-------~~~~-~L~p~~D~~tg~l~lsGk----GD~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 246 DLKNTTSALVTMSID-------NASA-PLIPHYDESTGLIYLIGK----GDGNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred ECCCCCCceEEEEec-------CCcc-ceEEeeeCCCCCEEEEEE----CCCeEEEEEccCCcEEeecc
Confidence 9874 3322 22221 1112 222444454 65544433 56679999998776656543
No 196
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.04 E-value=6.8e-09 Score=104.67 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=113.8
Q ss_pred hhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC-CCCcEEEEeechHHHHHHHHHhh
Q 004067 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA-KVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 580 ~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i-d~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
+...+.++||+|+++||.|.|. .|...... ...+-|.+++.+.+.....+ ...+++++|||.||+.+++++..
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~---~y~~~~~~---a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGT---PYLNGRSE---AYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCC---cccCcHhH---HHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 3566779999999999998876 33322111 12245555555555443222 34689999999999999887754
Q ss_pred ----CCCc---eEEEEEcCCCCCcccc--------------------ccccc------ccc-------------------
Q 004067 659 ----FPDV---FQCAVSGAPVTSWDGY--------------------DTFYT------EKY------------------- 686 (776)
Q Consensus 659 ----~~~~---~~~~v~~~~~~~~~~~--------------------~~~~~------~~~------------------- 686 (776)
-|++ +.+.++.+|..++..+ ...|. ..+
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 2554 6777777776653210 00000 000
Q ss_pred --cCCCCCC------------c---------cchhcCCh-hhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCC-C
Q 004067 687 --MGLPSED------------P---------VGYEYSSV-MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR-K 741 (776)
Q Consensus 687 --~~~~~~~------------~---------~~~~~~~~-~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~ 741 (776)
....... . ..+.+.+. ...-..-+.|++|.||..|+++|+.....+++++++.| .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGA 251 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Confidence 0000000 0 00001010 00001114799999999999999999999999999999 7
Q ss_pred CeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 742 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 742 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++++.+++.+|....... ....++||...
T Consensus 252 ~V~~~~~~~~~H~~~~~~~----~~~a~~Wl~~r 281 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAAFAS----APDALAWLDDR 281 (290)
T ss_pred CEEEEecCCCChhhhhhcC----cHHHHHHHHHH
Confidence 9999999999997532222 35666777654
No 197
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=5.6e-07 Score=83.81 Aligned_cols=277 Identities=10% Similarity=0.103 Sum_probs=159.0
Q ss_pred CCceeEcCC-CCEEEEEeCCCCcCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPD-DNLITYLLSPDHSLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpD-G~~ia~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+-.++|+|- |..||--+. ...|.+|+..++.. +.+++. .+.+.+.+.+|
T Consensus 17 ~W~~awhp~~g~ilAscg~-----Dk~vriw~~~~~~s~~ck~vld~----------------------~hkrsVRsvAw 69 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGT-----DKAVRIWSTSSGDSWTCKTVLDD----------------------GHKRSVRSVAW 69 (312)
T ss_pred EEEEEeccCCceEEEeecC-----CceEEEEecCCCCcEEEEEeccc----------------------cchheeeeeee
Confidence 478999998 887764332 35799999885443 222220 12357899999
Q ss_pred eecCCCceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCce-eEEee
Q 004067 133 VKTSSKKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQ-RQLTH 207 (776)
Q Consensus 133 sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~-~~lt~ 207 (776)
|| .|+.|+.. -+...-+|.-..++-. ..|..++ ..+..++||++|.+||-.++. -+|+|..+.+.. .-+..
T Consensus 70 sp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE-nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 70 SP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHE-NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred cC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccc-cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 99 99999987 4556666665555433 2344333 358899999999999998875 589988775432 21111
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
-. ++..-+..+.|.|-...|+..+.|. .|
T Consensus 146 L~---------------~HtqDVK~V~WHPt~dlL~S~SYDn------------------------------------TI 174 (312)
T KOG0645|consen 146 LQ---------------EHTQDVKHVIWHPTEDLLFSCSYDN------------------------------------TI 174 (312)
T ss_pred ec---------------cccccccEEEEcCCcceeEEeccCC------------------------------------eE
Confidence 00 0011145778999777666555442 34
Q ss_pred EEEEcC-CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEE--EECCCCceEEEEEeccCceee
Q 004067 288 GVVSAA-GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK--FDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 288 ~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~--~d~~~g~~~~l~~~~~~~~~~ 364 (776)
.+|... .+.-..... +.++...+..+.|.++|..++..++.+ .-.||+ .++..-..+.+..
T Consensus 175 k~~~~~~dddW~c~~t------l~g~~~TVW~~~F~~~G~rl~s~sdD~--tv~Iw~~~~~~~~~~sr~~Y~-------- 238 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQT------LDGHENTVWSLAFDNIGSRLVSCSDDG--TVSIWRLYTDLSGMHSRALYD-------- 238 (312)
T ss_pred EEEeecCCCCeeEEEE------ecCccceEEEEEecCCCceEEEecCCc--ceEeeeeccCcchhcccceEe--------
Confidence 555444 222111111 145556788999999998888776433 223444 2222211122211
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEe--CCCceeecccc----CCeEEEEEEeecCCCcEEEEEEccCCCc
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD--INGTCLGPITE----GDWMVEQIVGVNEASGQVYFTGTLDGPL 438 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~--~~g~~~~~lt~----~~~~~~~~~~~s~dg~~i~~~~~~~~~~ 438 (776)
++|. ++++.+.-.++.-.||.-. +++.....+.+ ++..+..+ .|+|.++-++++...++.
T Consensus 239 -----------v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV-~w~p~~~~~L~s~~DDG~- 304 (312)
T KOG0645|consen 239 -----------VPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV-QWNPKVSNRLASGGDDGI- 304 (312)
T ss_pred -----------eeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE-EEcCCCCCceeecCCCce-
Confidence 1233 3344444444434444443 23333333332 23445555 499976667777777654
Q ss_pred eeeEEEEE
Q 004067 439 ESHLYCAK 446 (776)
Q Consensus 439 ~~~l~~~~ 446 (776)
+.+|.+.
T Consensus 305 -v~~W~l~ 311 (312)
T KOG0645|consen 305 -VNFWELE 311 (312)
T ss_pred -EEEEEec
Confidence 7787763
No 198
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=1.4e-06 Score=88.77 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCEEEEEeCCCC-cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 65 DDNLITYLLSPDH-SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 65 DG~~ia~~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
|+++ +|+.+... ....+|+++|.++++....... +..-.. ..|| ||+.|+
T Consensus 11 ~~~~-v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~------------------------G~~P~~-~~sp---Dg~~ly 61 (352)
T TIGR02658 11 DARR-VYVLDPGHFAATTQVYTIDGEAGRVLGMTDG------------------------GFLPNP-VVAS---DGSFFA 61 (352)
T ss_pred CCCE-EEEECCcccccCceEEEEECCCCEEEEEEEc------------------------cCCCce-eECC---CCCEEE
Confidence 5565 56665331 1126899999999876433321 111122 3888 999999
Q ss_pred EeCC-----------CcEEEEeCCCCccceecCCCCC------CCccCceeCCCCCEEEEEE---CCcEEEEecCCCcee
Q 004067 144 VPLP-----------DGIYFQDLSCSKPELKLSSSSC------SPVIDPHLSSDGTMIAFVR---DCELHVLNLLINEQR 203 (776)
Q Consensus 144 ~~~~-----------~~l~~~d~~~~~~~~~l~~~~~------~~~~~~~~SpDg~~la~~~---~~~l~~~~l~~g~~~ 203 (776)
.+.. ..|-++|+.+.+....+..++. ......++||||+.|.... ++.+-++|+++++..
T Consensus 62 va~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 62 HASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV 141 (352)
T ss_pred EEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE
Confidence 8733 5688999999988744443221 1134689999999876543 245999999998775
Q ss_pred EE
Q 004067 204 QL 205 (776)
Q Consensus 204 ~l 205 (776)
.-
T Consensus 142 ~e 143 (352)
T TIGR02658 142 RM 143 (352)
T ss_pred EE
Confidence 43
No 199
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.01 E-value=3.3e-09 Score=103.64 Aligned_cols=207 Identities=19% Similarity=0.146 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCC-CCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG-TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg-~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
-+|||+-|....... .++...+++.|...||.++.+-++. ++++|.... ..+++|+.++|+||+...
T Consensus 34 ~~llfIGGLtDGl~t----vpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~ 101 (303)
T PF08538_consen 34 NALLFIGGLTDGLLT----VPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEK 101 (303)
T ss_dssp SEEEEE--TT--TT-----STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCCCC----CchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhh
Confidence 488999884332221 1234456777878899999999875 344442211 124889999999999873
Q ss_pred --CCCCCcEEEEeechHHHHHHHHHhhCC-----CceEEEEEcCCCCCcccccccccc---------------------c
Q 004067 634 --LAKVGHIGLYGWSYGGYLSAITLARFP-----DVFQCAVSGAPVTSWDGYDTFYTE---------------------K 685 (776)
Q Consensus 634 --~id~~~i~l~G~S~GG~~a~~~a~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~---------------------~ 685 (776)
.-..++|+|+|||-|..-++.++.... ..++++|+.+|+.|-..+.....+ .
T Consensus 102 ~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~ 181 (303)
T PF08538_consen 102 GGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDE 181 (303)
T ss_dssp ------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-
T ss_pred ccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCc
Confidence 125679999999999999999998642 568999999999885433221100 0
Q ss_pred cc----------CCCCCCc------------cch----hcCChhhhhccCCCcEEEEecCCCCccChH-HHHHHHHHHHH
Q 004067 686 YM----------GLPSEDP------------VGY----EYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVA 738 (776)
Q Consensus 686 ~~----------~~~~~~~------------~~~----~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~ 738 (776)
.+ ..|.... +.| .......-..++..|+|++.+.+|+.||.. .-+.+.++++.
T Consensus 182 ~lp~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~ 261 (303)
T PF08538_consen 182 ILPREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKA 261 (303)
T ss_dssp GG----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-----------------
T ss_pred eeeccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccc
Confidence 00 1111000 000 000111235677889999999999999874 33556666654
Q ss_pred CCC----CeEEEEecCCCCCCCCCCc---HHHHHHHHHHHHH
Q 004067 739 ARK----PYEILIFPDERHMPRRHRD---RIYMEERIWEFIE 773 (776)
Q Consensus 739 ~~~----~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~ 773 (776)
.-. ...-.++||++|.+..... .+.+.+++.+||+
T Consensus 262 a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 262 ATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccCC
Confidence 332 2235589999999865443 3467788888874
No 200
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.01 E-value=9.2e-09 Score=113.07 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=99.7
Q ss_pred CCCceeEcCCCCEEEEEeCC---CCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 56 APTSIGFSPDDNLITYLLSP---DHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
.+.++++||||++|||+... ...+..+||+++. ++..++++. +.....++|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~-------------------------g~~~t~PsW 404 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLE-------------------------GHSLTRPSW 404 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeec-------------------------CCCCCCceE
Confidence 45899999999999999841 1123569999997 455577764 234678999
Q ss_pred eecCCCceEEEEeCC-------------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEE---Ee
Q 004067 133 VKTSSKKKIIMVPLP-------------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHV---LN 196 (776)
Q Consensus 133 sp~~~dg~~l~~~~~-------------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~---~~ 196 (776)
|| ||++|+|..+ ++||++++++++.. . .... .+..++|||||++|||+..++||+ ..
T Consensus 405 sp---DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~--~~~g-~Issl~wSpDG~RiA~i~~g~v~Va~Vvr 477 (591)
T PRK13616 405 SL---DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S--RVPG-PISELQLSRDGVRAAMIIGGKVYLAVVEQ 477 (591)
T ss_pred CC---CCCceEEEecCcceEEEeccCCCceEEEEeccCchhh-h--ccCC-CcCeEEECCCCCEEEEEECCEEEEEEEEe
Confidence 99 9998888732 36888888888876 4 2222 488999999999999999999998 66
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
.++|+ +.|+.-.. ...+.. .....+.|.+|++ |+...
T Consensus 478 ~~~G~-~~l~~~~~---l~~~l~--------~~~~~l~W~~~~~-L~V~~ 514 (591)
T PRK13616 478 TEDGQ-YALTNPRE---VGPGLG--------DTAVSLDWRTGDS-LVVGR 514 (591)
T ss_pred CCCCc-eeecccEE---eecccC--------CccccceEecCCE-EEEEe
Confidence 66776 44422110 000000 0023678999998 55443
No 201
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.01 E-value=1.8e-07 Score=97.93 Aligned_cols=290 Identities=11% Similarity=0.081 Sum_probs=144.9
Q ss_pred CcEEEEeC--CCCccceecCC-CCCCCccCceeCCCCCEEEEEECC-----cEEEEec--CCCceeEEeeCCCCCceecC
Q 004067 148 DGIYFQDL--SCSKPELKLSS-SSCSPVIDPHLSSDGTMIAFVRDC-----ELHVLNL--LINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 148 ~~l~~~d~--~~~~~~~~l~~-~~~~~~~~~~~SpDg~~la~~~~~-----~l~~~~l--~~g~~~~lt~~~~~~~~~~~ 217 (776)
+.||.+.+ ++++.. .+.. ........+.++|+++.|..+... .|..+.+ ++|+.+.+.........
T Consensus 13 ~gI~~~~~d~~~g~l~-~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~--- 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLT-LVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS--- 88 (345)
T ss_dssp TEEEEEEEETTTTEEE-EEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC---
T ss_pred CcEEEEEEcCCCCCce-EeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC---
Confidence 45665555 566655 2221 122236778999999988777653 3544444 44666665432211101
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC-Cc
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GP 296 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~-~~ 296 (776)
.-.++.+|||+.|+...... ..+.+++++. |.
T Consensus 89 ------------p~~i~~~~~g~~l~vany~~-----------------------------------g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 89 ------------PCHIAVDPDGRFLYVANYGG-----------------------------------GSVSVFPLDDDGS 121 (345)
T ss_dssp ------------EEEEEECTTSSEEEEEETTT-----------------------------------TEEEEEEECTTSE
T ss_pred ------------cEEEEEecCCCEEEEEEccC-----------------------------------CeEEEEEccCCcc
Confidence 12567899999888765432 2345555554 44
Q ss_pred eEEEE----cc-cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee-ecccccc
Q 004067 297 VSWMD----LQ-CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV-NLHDCFT 370 (776)
Q Consensus 297 ~~~l~----~~-~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~-~~~~~~~ 370 (776)
+.... .. .++........+...+.|+|||++++.. +.+.+.-.+|.++..+++......-..+.-. ..+-.|+
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS 200 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence 33221 00 0111112234456678999999977544 5555554455555455555442221111000 0001122
Q ss_pred cCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc---cC--Ce---EEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 371 PLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT---EG--DW---MVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 371 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt---~~--~~---~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
| ++..+|.+.+.++.-.+|.++...+..+.+. .. .. ....-+.+||||++||++....+. +.+
T Consensus 201 p-------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s--I~v 271 (345)
T PF10282_consen 201 P-------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS--ISV 271 (345)
T ss_dssp T-------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE--EEE
T ss_pred C-------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE--EEE
Confidence 2 2233455555566444444443355433221 10 11 012234589999998888766543 667
Q ss_pred EEEEeCCCCCCccccceeecCC-CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 443 YCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
|.++.. +|. +..+..+... .....+.++|||++|+......+. -.++.+|..+|..
T Consensus 272 f~~d~~-~g~--l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~l 328 (345)
T PF10282_consen 272 FDLDPA-TGT--LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT-VSVFDIDPDTGKL 328 (345)
T ss_dssp EEECTT-TTT--EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE-EEEEEEETTTTEE
T ss_pred EEEecC-CCc--eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe-EEEEEEeCCCCcE
Confidence 777532 232 1233344432 336788999999999888766553 3444556667763
No 202
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=1e-07 Score=100.57 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=174.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.++.+|.|...|+- .. ...|.+|+.++.+. +.++. .-+..-.|-|
T Consensus 376 VRsl~vS~d~~~~~S--ga----~~SikiWn~~t~kciRTi~~--------------------------~y~l~~~Fvp- 422 (888)
T KOG0306|consen 376 VRSLCVSSDSILLAS--GA----GESIKIWNRDTLKCIRTITC--------------------------GYILASKFVP- 422 (888)
T ss_pred eeEEEeecCceeeee--cC----CCcEEEEEccCcceeEEecc--------------------------ccEEEEEecC-
Confidence 588899999877762 21 24699999998776 44442 2345667888
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEec-----CCCceeE-Eee
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNL-----LINEQRQ-LTH 207 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l-----~~g~~~~-lt~ 207 (776)
.+++|+.. .+|.|-++|+.+....-.+..+++ -+..++.+||++..+-.+... +-.|+. ..|..+. |.-
T Consensus 423 --gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 423 --GDRYIVLGTKNGELQVFDLASASLVETIRAHDG-AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred --CCceEEEeccCCceEEEEeehhhhhhhhhcccc-ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 78888776 678899999998877623333444 488899999999988887542 333332 2333322 221
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRL 287 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 287 (776)
.... ... +. .-+..+++||||+.|+..-.| ..+
T Consensus 500 ~~~r--tLe-l~--------ddvL~v~~Spdgk~LaVsLLd------------------------------------nTV 532 (888)
T KOG0306|consen 500 KHTR--TLE-LE--------DDVLCVSVSPDGKLLAVSLLD------------------------------------NTV 532 (888)
T ss_pred ccce--EEe-cc--------ccEEEEEEcCCCcEEEEEecc------------------------------------CeE
Confidence 1110 000 00 014478899999999876543 224
Q ss_pred EEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccCceeecc
Q 004067 288 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLH 366 (776)
Q Consensus 288 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~ 366 (776)
.+|-+++=+...- +.+|.-.+..+..|||++.++..+ .+..+.+|-++=|..+ .+..|.+..-..
T Consensus 533 kVyflDtlKFfls--------LYGHkLPV~smDIS~DSklivTgS----ADKnVKiWGLdFGDCHKS~fAHdDSvm~V-- 598 (888)
T KOG0306|consen 533 KVYFLDTLKFFLS--------LYGHKLPVLSMDISPDSKLIVTGS----ADKNVKIWGLDFGDCHKSFFAHDDSVMSV-- 598 (888)
T ss_pred EEEEecceeeeee--------ecccccceeEEeccCCcCeEEecc----CCCceEEeccccchhhhhhhcccCceeEE--
Confidence 4555555443321 256677788899999999887665 4556888888888875 455555442221
Q ss_pred cccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEE
Q 004067 367 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 445 (776)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~ 445 (776)
.|.| ...+.|++.+++ .+..||.+.= ..+.|..+...+.-.. .+|+|.+++ +++.+. .+.+|..
T Consensus 599 -~F~P--------~~~~FFt~gKD~--kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vv-s~shD~--sIRlwE~ 663 (888)
T KOG0306|consen 599 -QFLP--------KTHLFFTCGKDG--KVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVV-SSSHDK--SIRLWER 663 (888)
T ss_pred -EEcc--------cceeEEEecCcc--eEEeechhhhhhheeeccchheeeeeE-EcCCCCeEE-eccCCc--eeEeeec
Confidence 2433 233677788888 8889985432 3566666666666554 889999644 443332 2677766
Q ss_pred E
Q 004067 446 K 446 (776)
Q Consensus 446 ~ 446 (776)
.
T Consensus 664 t 664 (888)
T KOG0306|consen 664 T 664 (888)
T ss_pred c
Confidence 4
No 203
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=9.8e-08 Score=95.14 Aligned_cols=283 Identities=15% Similarity=0.080 Sum_probs=165.1
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+++++.|.|.-..+....- ++ .-.||.+|-+... .|++. .+ ....+....|.|
T Consensus 215 ~I~sv~FHp~~plllvaG~-d~--~lrifqvDGk~N~--~lqS~--------~l-------------~~fPi~~a~f~p- 267 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGL-DG--TLRIFQVDGKVNP--KLQSI--------HL-------------EKFPIQKAEFAP- 267 (514)
T ss_pred CceEEEecCCCceEEEecC-CC--cEEEEEecCccCh--hheee--------ee-------------ccCccceeeecC-
Confidence 3588999998886654332 22 2345555543333 33321 00 124577788999
Q ss_pred CCCceEEEEe--CCCcEEEEeCCCCccceecCCCC---CCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee-EEeeC
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSS---CSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR-QLTHG 208 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~---~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~-~lt~~ 208 (776)
+|+..+|. ...-+|.||+.+++.. ++.... ...+..+..|||++.||+... +.|++....|++.. .+..+
T Consensus 268 --~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie 344 (514)
T KOG2055|consen 268 --NGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE 344 (514)
T ss_pred --CCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec
Confidence 99955544 3344889999999887 554322 223677899999999999876 47999988887642 22222
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+. +..+.||.||+.|+..... .++|
T Consensus 345 G~-------------------v~~~~fsSdsk~l~~~~~~------------------------------------GeV~ 369 (514)
T KOG2055|consen 345 GV-------------------VSDFTFSSDSKELLASGGT------------------------------------GEVY 369 (514)
T ss_pred cE-------------------EeeEEEecCCcEEEEEcCC------------------------------------ceEE
Confidence 21 5578899999887754321 4689
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC----CCceEEEEEeccCceee
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK----TGQRKVILVEELDSWVN 364 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~----~g~~~~l~~~~~~~~~~ 364 (776)
+||+........-.. .+.-+-..++.|++|.+++..++. +-+-+||.+ ++.++++..-..-....
T Consensus 370 v~nl~~~~~~~rf~D-------~G~v~gts~~~S~ng~ylA~GS~~----GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-------DGSVHGTSLCISLNGSYLATGSDS----GIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEecCCcceEEEEee-------cCccceeeeeecCCCceEEeccCc----ceEEEeccchhhccCCCCchhhhhhhheee
Confidence 999998876555332 233355678889999987776643 334455532 34455443211111111
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccC---CeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~---~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
..-.|++ +..++.+..+.....|.++.+-.-. .+-.... -..+..+ .|||.|.++++-. .. .++
T Consensus 439 tsl~Fn~--------d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~-aFSP~sG~lAvGN-e~--grv 506 (514)
T KOG2055|consen 439 TSLQFNH--------DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM-AFSPNSGYLAVGN-EA--GRV 506 (514)
T ss_pred eeeeeCc--------chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE-EecCCCceEEeec-CC--Cce
Confidence 1112333 3346665555555577777643321 1111111 1224444 4999998766553 33 347
Q ss_pred eEEEEE
Q 004067 441 HLYCAK 446 (776)
Q Consensus 441 ~l~~~~ 446 (776)
+||++.
T Consensus 507 ~l~kL~ 512 (514)
T KOG2055|consen 507 HLFKLH 512 (514)
T ss_pred eeEeec
Confidence 899875
No 204
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.00 E-value=5.7e-08 Score=97.97 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=163.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.+++-|.|-+++ .|.....|..||.+|-....-. + ..|.+ .....+.+..||+
T Consensus 170 Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~-f-------r~l~P----------~E~h~i~sl~ys~-- 224 (641)
T KOG0772|consen 170 VSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRS-F-------RQLQP----------CETHQINSLQYSV-- 224 (641)
T ss_pred EEEeeecCCCceee-----eccccceEEEEecccccccchh-h-------hccCc----------ccccccceeeecC--
Confidence 56788899999888 4555678999999886542111 0 11111 1235688999999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecC------------CCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLS------------SSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINE 201 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~------------~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~ 201 (776)
.|..|++. ...+..++|-+|.+.. ..- .+.-..+..-.|.|+.+....+.. +.|.+|++....
T Consensus 225 -Tg~~iLvvsg~aqakl~DRdG~~~~-e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 225 -TGDQILVVSGSAQAKLLDRDGFEIV-EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred -CCCeEEEEecCcceeEEccCCceee-eeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 88888765 5566777787776544 221 122223556799999998777765 458888887543
Q ss_pred e-eEEe-eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 202 Q-RQLT-HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 202 ~-~~lt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
. +++. ..+.+.. .+ .+...+|+|||+.||-...|
T Consensus 303 ~q~qVik~k~~~g~---Rv----------~~tsC~~nrdg~~iAagc~D------------------------------- 338 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGK---RV----------PVTSCAWNRDGKLIAAGCLD------------------------------- 338 (641)
T ss_pred hheeEEeeccCCCc---cc----------CceeeecCCCcchhhhcccC-------------------------------
Confidence 2 2222 2221100 01 14578899999998866543
Q ss_pred CCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCC--cceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-
Q 004067 280 ASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYD--EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL- 355 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~- 355 (776)
..|.+|+.-+..... +-.. ..| +..+..++||+||++|+... .+..|.+||+..-..-...
T Consensus 339 -----GSIQ~W~~~~~~v~p~~~vk------~AH~~g~~Itsi~FS~dg~~LlSRg----~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 339 -----GSIQIWDKGSRTVRPVMKVK------DAHLPGQDITSISFSYDGNYLLSRG----FDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred -----CceeeeecCCcccccceEee------eccCCCCceeEEEeccccchhhhcc----CCCceeeeeccccccchhhh
Confidence 235556642211110 1000 122 23688999999999887544 5667999999764332221
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEecc----CCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEE
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK----TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~ 430 (776)
..--..+-..+..|+| ++.++++.+. .+...|+.++..+=. ...|.-....|.... |.|.=.+|++
T Consensus 404 tgL~t~~~~tdc~FSP--------d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~-WhpkLNQi~~ 474 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSP--------DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCL-WHPKLNQIFA 474 (641)
T ss_pred cCCCccCCCCccccCC--------CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEe-ecchhhheee
Confidence 1111133333455666 4557776432 223379998865433 233333344455444 8887666555
Q ss_pred EEcc
Q 004067 431 TGTL 434 (776)
Q Consensus 431 ~~~~ 434 (776)
.+..
T Consensus 475 gsgd 478 (641)
T KOG0772|consen 475 GSGD 478 (641)
T ss_pred ecCC
Confidence 5443
No 205
>PRK10115 protease 2; Provisional
Probab=99.00 E-value=7.1e-07 Score=101.27 Aligned_cols=289 Identities=9% Similarity=0.075 Sum_probs=168.4
Q ss_pred CCCCEEEEEeCCCCcCcceEEEEec-CC---CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 64 PDDNLITYLLSPDHSLSRKVFSFDP-KT---CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 64 pDG~~ia~~~~~~~~~~~~l~~~~~-~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
..|.+++|.....+. ..-||.... ++ +.++.|.+... ++.+.. ...+..+.||| ||
T Consensus 79 ~~g~~~y~~~~~~g~-~~~~~~r~~~~~~~~~~~~~llD~n~-------~a~~~~---------~~~l~~~~~Sp---dg 138 (686)
T PRK10115 79 IKNGYRYRHIYEPGC-EYAIYQRQSAFSEEWDEWETLLDANK-------RAAHSE---------FYTLGGMAITP---DN 138 (686)
T ss_pred EECCEEEEEEEcCCC-ccEEEEEecCCCCCCCCCEEEEcchh-------hccCCC---------cEEEeEEEECC---CC
Confidence 457888888765554 355665543 22 33566665322 111100 12356788999 99
Q ss_pred eEEEEeCC------CcEEEEeCCCCccce-ecCCCCCCCccCceeCCCCCEEEEEEC-------CcEEEEecCCC--cee
Q 004067 140 KIIMVPLP------DGIYFQDLSCSKPEL-KLSSSSCSPVIDPHLSSDGTMIAFVRD-------CELHVLNLLIN--EQR 203 (776)
Q Consensus 140 ~~l~~~~~------~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~SpDg~~la~~~~-------~~l~~~~l~~g--~~~ 203 (776)
++|+|..+ .+|++.|+.+|+... .+.. . ...+.|++||+.|+|++. .+||++++.++ +.+
T Consensus 139 ~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~-~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~ 214 (686)
T PRK10115 139 TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---V-EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE 214 (686)
T ss_pred CEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---c-ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence 99999843 359999999887321 3322 1 245899999999999864 36999999999 556
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.|..+.... . | ....-+.|++.++........
T Consensus 215 lv~~e~~~~-~------~---------~~~~~s~d~~~l~i~~~~~~~-------------------------------- 246 (686)
T PRK10115 215 LVYEEKDDT-F------Y---------VSLHKTTSKHYVVIHLASATT-------------------------------- 246 (686)
T ss_pred EEEeeCCCC-E------E---------EEEEEcCCCCEEEEEEECCcc--------------------------------
Confidence 665543321 0 0 012234589888754432211
Q ss_pred eEEEEEEEc--CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CCceEEEEEeccC
Q 004067 284 KVRLGVVSA--AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQRKVILVEELD 360 (776)
Q Consensus 284 ~~~l~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~ 360 (776)
..+++++. .+++...+.. ....... .+. ..+..+++.++.+.....|+.+++. .++.+.+..+...
T Consensus 247 -~~~~l~~~~~~~~~~~~~~~-------~~~~~~~-~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 315 (686)
T PRK10115 247 -SEVLLLDAELADAEPFVFLP-------RRKDHEY-SLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPREN 315 (686)
T ss_pred -ccEEEEECcCCCCCceEEEE-------CCCCCEE-EEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCC
Confidence 23556663 2343332211 1111112 221 2234677777777778889999987 4666777665322
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccc-cCCeEEEEEEeec--CCCcEEEEEE-ccCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT-EGDWMVEQIVGVN--EASGQVYFTG-TLDG 436 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt-~~~~~~~~~~~~s--~dg~~i~~~~-~~~~ 436 (776)
.-+.. +.+..+.+++....+|...|++++++++....|+ .....+ ....++ ++++.+++.. +...
T Consensus 316 ~~i~~----------~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~~ 384 (686)
T PRK10115 316 IMLEG----------FTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYV-TWIAYNPEPETSRLRYGYSSMTT 384 (686)
T ss_pred CEEEE----------EEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceE-eeecccCCCCCceEEEEEecCCC
Confidence 11111 1223556777788899999999998877777776 322222 222234 5555566554 4455
Q ss_pred CceeeEEEEEeC
Q 004067 437 PLESHLYCAKLY 448 (776)
Q Consensus 437 ~~~~~l~~~~~~ 448 (776)
| ..+|.+++.
T Consensus 385 P--~~~y~~d~~ 394 (686)
T PRK10115 385 P--DTLFELDMD 394 (686)
T ss_pred C--CEEEEEECC
Confidence 5 678888873
No 206
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=4.8e-09 Score=99.15 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=159.3
Q ss_pred eeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCC-------CCCccCceeCCCCCEEEEEE-CCcEEEEecC
Q 004067 128 TRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSS-------CSPVIDPHLSSDGTMIAFVR-DCELHVLNLL 198 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~-------~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~ 198 (776)
....||| ||++|+.. .++-|-+||.-+|+.+..|.--. ...+....||.|...||-.+ ++.|-+|.+.
T Consensus 217 EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 217 ECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 3568999 99999976 67889999999998874443110 11256789999999998876 4689999999
Q ss_pred CCceeE-EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 199 INEQRQ-LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 199 ~g~~~~-lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
+|...+ +..... .| +..+.||.|+..|+..+.|
T Consensus 294 tG~ClRrFdrAHt-----kG------------vt~l~FSrD~SqiLS~sfD----------------------------- 327 (508)
T KOG0275|consen 294 TGQCLRRFDRAHT-----KG------------VTCLSFSRDNSQILSASFD----------------------------- 327 (508)
T ss_pred cchHHHHhhhhhc-----cC------------eeEEEEccCcchhhccccc-----------------------------
Confidence 997633 221111 11 4478899999999877654
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..+.+-.+++|+.-+- ..++..++....|++||..++..+ .+..+.+|+.++++.-.-+..
T Consensus 328 -------~tvRiHGlKSGK~LKE--------frGHsSyvn~a~ft~dG~~iisaS----sDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 328 -------QTVRIHGLKSGKCLKE--------FRGHSSYVNEATFTDDGHHIISAS----SDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred -------ceEEEeccccchhHHH--------hcCccccccceEEcCCCCeEEEec----CCccEEEecCcchhhhhhccC
Confidence 3356777777775332 267788999999999999888776 456799999998876443332
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeE---EEEEEeecCCCcEEEEEEcc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWM---VEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~---~~~~~~~s~dg~~i~~~~~~ 434 (776)
....+....-..-| ..+-.++ +.++.. .+|+++..|.-.+.++.+..+ .... ..||.|.+||..+-+
T Consensus 389 ~~~d~~vnsv~~~P------Knpeh~i-VCNrsn--tv~imn~qGQvVrsfsSGkREgGdFi~~-~lSpkGewiYcigED 458 (508)
T KOG0275|consen 389 LGTDYPVNSVILLP------KNPEHFI-VCNRSN--TVYIMNMQGQVVRSFSSGKREGGDFINA-ILSPKGEWIYCIGED 458 (508)
T ss_pred CCCcccceeEEEcC------CCCceEE-EEcCCC--eEEEEeccceEEeeeccCCccCCceEEE-EecCCCcEEEEEccC
Confidence 22211111001111 1122233 444544 899999999988988887422 2222 389999999888643
Q ss_pred CCCceeeEEEEEeC
Q 004067 435 DGPLESHLYCAKLY 448 (776)
Q Consensus 435 ~~~~~~~l~~~~~~ 448 (776)
..+|.....
T Consensus 459 -----~vlYCF~~~ 467 (508)
T KOG0275|consen 459 -----GVLYCFSVL 467 (508)
T ss_pred -----cEEEEEEee
Confidence 367777653
No 207
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.99 E-value=2.7e-07 Score=87.11 Aligned_cols=267 Identities=12% Similarity=0.058 Sum_probs=165.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+....|+|||..+| .+....+|++|+..+... ..+..| ...+-.+.|.+
T Consensus 50 I~~~~F~P~gs~~a-----SgG~Dr~I~LWnv~gdceN~~~lkgH------------------------sgAVM~l~~~~ 100 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFA-----SGGSDRAIVLWNVYGDCENFWVLKGH------------------------SGAVMELHGMR 100 (338)
T ss_pred EEEEEECCCCCeEe-----ecCCcceEEEEeccccccceeeeccc------------------------cceeEeeeecc
Confidence 57889999999998 344467899999876543 333332 24678899999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
||..|+.. .|..++.||.++|+...+...... -+.....+.-|..++-... +.+.+||....+..++..+...
T Consensus 101 ---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq 176 (338)
T KOG0265|consen 101 ---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ 176 (338)
T ss_pred ---CCCEEEEecCCceEEEEecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee
Confidence 99999876 677899999999988744433222 2444455556666666553 4688999887665544333221
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
..++.|.-++..+.....| .+|.+||
T Consensus 177 ------------------ltAv~f~d~s~qv~sggId------------------------------------n~ikvWd 202 (338)
T KOG0265|consen 177 ------------------LTAVGFKDTSDQVISGGID------------------------------------NDIKVWD 202 (338)
T ss_pred ------------------EEEEEecccccceeecccc------------------------------------Cceeeec
Confidence 3467898888887765543 3478999
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC---Cce-EEEEEeccCcee--ec
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT---GQR-KVILVEELDSWV--NL 365 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~---g~~-~~l~~~~~~~~~--~~ 365 (776)
+..+....+. .++...+..++.||+|..+..-+ -+..+.+||..- +.. -.+.....-.+- -.
T Consensus 203 ~r~~d~~~~l--------sGh~DtIt~lsls~~gs~llsns----Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 203 LRKNDGLYTL--------SGHADTITGLSLSRYGSFLLSNS----MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred cccCcceEEe--------ecccCceeeEEeccCCCcccccc----ccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 9766654441 57788899999999998665332 245677888643 221 233332211110 00
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
...|+|. +..+-+.+ ....+|+||..+. -.-.|..+...|... .|.|....|.-.+.
T Consensus 271 ~cswsp~-------~~~i~ags---~dr~vyvwd~~~r~~lyklpGh~gsvn~~-~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 271 KCSWSPN-------GTKITAGS---ADRFVYVWDTTSRRILYKLPGHYGSVNEV-DFHPTEPIILSCSS 328 (338)
T ss_pred eeeccCC-------CCcccccc---ccceEEEeecccccEEEEcCCcceeEEEe-eecCCCcEEEEecc
Confidence 1122222 11232222 1238999998774 455666666666655 48998775444433
No 208
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.98 E-value=4.4e-09 Score=104.50 Aligned_cols=222 Identities=14% Similarity=0.073 Sum_probs=126.2
Q ss_pred ceEEEEEcC-CCcEEEEEEEcCCCCCC--CCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC
Q 004067 524 PDIVQIQAN-DGTVLYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 600 (776)
Q Consensus 524 ~~~~~~~~~-dg~~l~~~~~~P~~~~~--~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g 600 (776)
...+++... .+.++...++.|..... ...++|+|++-||.+... ..+...++.+++.||+|..++.+|..
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~-------~~f~~~A~~lAs~Gf~Va~~~hpgs~ 110 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYV-------TGFAWLAEHLASYGFVVAAPDHPGSN 110 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCCc-------cchhhhHHHHhhCceEEEeccCCCcc
Confidence 445555554 36778899999876421 014789999999954431 24455789999999999999999863
Q ss_pred CCchhhhhhh----hhccCCccHHHHHHHHHHHHHc---C----CCCCCcEEEEeechHHHHHHHHHhhCCCc---e-EE
Q 004067 601 RRGLKFEASI----KHNCGRIDAEDQLTGAEWLIKQ---G----LAKVGHIGLYGWSYGGYLSAITLARFPDV---F-QC 665 (776)
Q Consensus 601 ~~~~~~~~~~----~~~~~~~~~~D~~~~i~~l~~~---~----~id~~~i~l~G~S~GG~~a~~~a~~~~~~---~-~~ 665 (776)
.-+.+-.... ..........|+...+++|.+. + .+|..+|+++|||+||+.++.++.-+.+. . .|
T Consensus 111 ~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C 190 (365)
T COG4188 111 AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHC 190 (365)
T ss_pred cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccHHHHHHHh
Confidence 2221111111 0001113467888888888876 4 47889999999999999999988654331 1 11
Q ss_pred E----EEc-CCCCCcccccc---cc---cccccCCCCCCccchh---cCCh---hhhhccCCCcEEEEecCCCCccChHH
Q 004067 666 A----VSG-APVTSWDGYDT---FY---TEKYMGLPSEDPVGYE---YSSV---MHHVHKMKGKLLLVHGMIDENVHFRH 728 (776)
Q Consensus 666 ~----v~~-~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~---~~~~---~~~~~~i~~P~lii~G~~D~~v~~~~ 728 (776)
. +.. .+..+-..... .+ ..+-...+.- ...+. ..+. ...+.+++.|++++.|..|...|+..
T Consensus 191 ~~~~~~~~~~~~~~~~~l~q~~av~~~~~~~~~rDpri-ravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~D~~aP~~~ 269 (365)
T COG4188 191 ESASRICLDPPGLNGRLLNQCAAVWLPRQAYDLRDPRI-RAVVAINPALGMIFGTTGLVKVTDPVLLAAGSADGFAPPVT 269 (365)
T ss_pred hhhhhcccCCCCcChhhhccccccccchhhhccccccc-eeeeeccCCcccccccccceeeecceeeecccccccCCccc
Confidence 1 000 01111000000 00 0000000000 00000 0000 12356778999999999999776642
Q ss_pred -HHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 729 -TARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 729 -~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
....+..| .+....+.+.|++.|.-
T Consensus 270 ~~~~~f~~l--~g~~k~~~~vp~a~h~s 295 (365)
T COG4188 270 EQIRPFGYL--PGALKYLRLVPGATHFS 295 (365)
T ss_pred ccccccccC--CcchhheeecCCCcccc
Confidence 23333333 23334678889999963
No 209
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.98 E-value=3.1e-08 Score=94.31 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=89.1
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhh
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 606 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~ 606 (776)
+.+.+..|..+...-..-+.. +.+.+..+||-+||.||+.. ++..+...|.+.|++++.++|||+|......
T Consensus 9 ~k~~~~~~~~~~~~a~y~D~~-~~gs~~gTVv~~hGsPGSH~-------DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~ 80 (297)
T PF06342_consen 9 VKFQAENGKIVTVQAVYEDSL-PSGSPLGTVVAFHGSPGSHN-------DFKYIRPPLDEAGIRFIGINYPGFGFTPGYP 80 (297)
T ss_pred EEcccccCceEEEEEEEEecC-CCCCCceeEEEecCCCCCcc-------chhhhhhHHHHcCeEEEEeCCCCCCCCCCCc
Confidence 444555555444444443332 22245668999999999854 4566788999999999999999998765322
Q ss_pred hhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCC
Q 004067 607 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 672 (776)
Q Consensus 607 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~ 672 (776)
. -.+.-.+-...++.+.++-.++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 81 ~-------~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 81 D-------QQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred c-------cccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 1 1123455666666677665555 78999999999999999999986 3466666654
No 210
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.97 E-value=1.2e-08 Score=108.62 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=119.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 616 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~ 616 (776)
+..+-|.|.... ...+.||+++..-.-..+.+- .+ -..++++|.++||.|+++|.+.-+...+.+. ...
T Consensus 201 ~eLiqY~P~te~---v~~~PLLIVPp~INK~YIlDL-~P-~~SlVr~lv~qG~~VflIsW~nP~~~~r~~~---ldD--- 269 (560)
T TIGR01839 201 LELIQYKPITEQ---QHARPLLVVPPQINKFYIFDL-SP-EKSFVQYCLKNQLQVFIISWRNPDKAHREWG---LST--- 269 (560)
T ss_pred eEEEEeCCCCCC---cCCCcEEEechhhhhhheeec-CC-cchHHHHHHHcCCeEEEEeCCCCChhhcCCC---HHH---
Confidence 556666775431 223455666763222111111 11 1235889999999999999986543322111 011
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHH----HHhhCCC-ceEEEEEcCCCCCccccc------------
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI----TLARFPD-VFQCAVSGAPVTSWDGYD------------ 679 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~----~a~~~~~-~~~~~v~~~~~~~~~~~~------------ 679 (776)
+ ++.+.++++.+++.. ...+|-++|+|+||.+++. +++++++ +++.++++....|+..-.
T Consensus 270 Y-v~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~ 346 (560)
T TIGR01839 270 Y-VDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLE 346 (560)
T ss_pred H-HHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHH
Confidence 1 235666666666653 4568999999999999997 6777775 788888766555432100
Q ss_pred -------------------------------ccccccc-cCCCC--C-------------------CccchhcCChh---
Q 004067 680 -------------------------------TFYTEKY-MGLPS--E-------------------DPVGYEYSSVM--- 703 (776)
Q Consensus 680 -------------------------------~~~~~~~-~~~~~--~-------------------~~~~~~~~~~~--- 703 (776)
..+...| ++... . ....|..+...
T Consensus 347 ~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG 426 (560)
T TIGR01839 347 AAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPD 426 (560)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCC
Confidence 0000001 11000 0 01122222221
Q ss_pred --------hhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 704 --------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 704 --------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
-.+.+|++|+|++.|..|.++|+..+..+.+.+ +.+.++++.++ ||.
T Consensus 427 ~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~---gs~~~fvl~~g-GHI 481 (560)
T TIGR01839 427 ALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLL---GGKRRFVLSNS-GHI 481 (560)
T ss_pred CEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHc---CCCeEEEecCC-Ccc
Confidence 136788999999999999999999999998876 44678877764 886
No 211
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=1.4e-07 Score=91.26 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=162.0
Q ss_pred CeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCc-
Q 004067 126 GVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINE- 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~- 201 (776)
.+...-+.| +-- |++. .+..|++||..+|+....|...... +..++|+.-|+.||-.+.. .+.+|+.++-.
T Consensus 110 ~vt~v~~hp---~~~-~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 110 SVTRVIFHP---SEA-LVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred ceeeeeecc---Cce-EEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 455666777 443 4444 5889999999999987455544443 7889999999998887765 37888877531
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..+...+.+. + +..+.+-|-|..|+..+.|
T Consensus 185 c~ks~~gh~h-----~------------vS~V~f~P~gd~ilS~srD--------------------------------- 214 (406)
T KOG0295|consen 185 CIKSLIGHEH-----G------------VSSVFFLPLGDHILSCSRD--------------------------------- 214 (406)
T ss_pred HHHHhcCccc-----c------------eeeEEEEecCCeeeecccc---------------------------------
Confidence 1121122221 1 4467788999988876654
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELD 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~ 360 (776)
..|+.|+.++|.....- .++...+.-+...-||.+++..+ ++.+|.+|-.+++..+.+. .++.+
T Consensus 215 ---~tik~We~~tg~cv~t~--------~~h~ewvr~v~v~~DGti~As~s----~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 215 ---NTIKAWECDTGYCVKTF--------PGHSEWVRMVRVNQDGTIIASCS----NDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ---cceeEEecccceeEEec--------cCchHhEEEEEecCCeeEEEecC----CCceEEEEEeccchhhhhhhccccc
Confidence 34789999999765442 45666888899999998777665 5677889998888554432 22222
Q ss_pred ----ceeecccccccCCCC--ccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 361 ----SWVNLHDCFTPLDKG--VTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 361 ----~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
.|..... + |.... -+-+++.++....+++ .|..||..++. .-.|..++..|++.. |+|.||+|+--+.
T Consensus 280 vEci~wap~~~-~-~~i~~at~~~~~~~~l~s~SrDk--tIk~wdv~tg~cL~tL~ghdnwVr~~a-f~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 280 VECIAWAPESS-Y-PSISEATGSTNGGQVLGSGSRDK--TIKIWDVSTGMCLFTLVGHDNWVRGVA-FSPGGKYILSCAD 354 (406)
T ss_pred eEEEEeccccc-C-cchhhccCCCCCccEEEeecccc--eEEEEeccCCeEEEEEecccceeeeeE-EcCCCeEEEEEec
Confidence 4543221 1 11111 1223345777777787 89999988775 556777777788776 9999997665554
Q ss_pred cCCCceeeEEEEEe
Q 004067 434 LDGPLESHLYCAKL 447 (776)
Q Consensus 434 ~~~~~~~~l~~~~~ 447 (776)
+ +. +++|.++.
T Consensus 355 D-kt--lrvwdl~~ 365 (406)
T KOG0295|consen 355 D-KT--LRVWDLKN 365 (406)
T ss_pred C-Cc--EEEEEecc
Confidence 3 33 78999884
No 212
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.96 E-value=1.3e-08 Score=96.80 Aligned_cols=189 Identities=12% Similarity=0.143 Sum_probs=120.7
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh------hhc------------
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI------KHN------------ 613 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~------~~~------------ 613 (776)
.|+|+|||-||.++++.+ +..++..||++||+|.++..|.+.....-+.... ...
T Consensus 116 ~k~PvvvFSHGLggsRt~-------YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ek 188 (399)
T KOG3847|consen 116 DKYPVVVFSHGLGGSRTL-------YSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEK 188 (399)
T ss_pred CCccEEEEecccccchhh-------HHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCce
Confidence 689999999998777653 2334778999999999999997643221111000 000
Q ss_pred -------cCCccHHHHHHHHHHHHHcC---------------------CCCCCcEEEEeechHHHHHHHHHhhCCCceEE
Q 004067 614 -------CGRIDAEDQLTGAEWLIKQG---------------------LAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 665 (776)
Q Consensus 614 -------~~~~~~~D~~~~i~~l~~~~---------------------~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~ 665 (776)
.-.....++..|+..+.+-. .+|..+++|+|||+||..++...+.+. .|+|
T Consensus 189 ef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~Frc 267 (399)
T KOG3847|consen 189 EFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRC 267 (399)
T ss_pred eEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceee
Confidence 00012566777777776531 245678999999999999988888655 4899
Q ss_pred EEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEE
Q 004067 666 AVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 745 (776)
Q Consensus 666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 745 (776)
+|+..+.. .|.+ ..+..+++.|+|+|.- .|.. ..+.....+++...+..-.+
T Consensus 268 aI~lD~WM---------------~Pl~----------~~~~~~arqP~~finv-~~fQ--~~en~~vmKki~~~n~g~~~ 319 (399)
T KOG3847|consen 268 AIALDAWM---------------FPLD----------QLQYSQARQPTLFINV-EDFQ--WNENLLVMKKIESQNEGNHV 319 (399)
T ss_pred eeeeeeee---------------cccc----------hhhhhhccCCeEEEEc-cccc--chhHHHHHHhhhCCCccceE
Confidence 99865431 1111 1245677889999983 3332 23455556666666666678
Q ss_pred EEecCCCCCC-CC-----------------C----CcHHHHHHHHHHHHHHhC
Q 004067 746 LIFPDERHMP-RR-----------------H----RDRIYMEERIWEFIERTL 776 (776)
Q Consensus 746 ~~~~~~~H~~-~~-----------------~----~~~~~~~~~~~~fl~~~l 776 (776)
+++.|+=|.- .. + +......+..++||++|+
T Consensus 320 it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~ 372 (399)
T KOG3847|consen 320 ITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHL 372 (399)
T ss_pred EEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhh
Confidence 8898888862 10 1 223445667788888874
No 213
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.94 E-value=2.8e-07 Score=85.27 Aligned_cols=269 Identities=10% Similarity=0.022 Sum_probs=146.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.++.|.-||.++|-.+.+ ..+-+|+++.. +.++.... +.++..+....|+|.+
T Consensus 23 v~Sv~wn~~g~~lasgs~d-----ktv~v~n~e~~--r~~~~~~~-------------------~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFD-----KTVSVWNLERD--RFRKELVY-------------------RGHTDSVDQLCWDPKH 76 (313)
T ss_pred ceEEEEcccCceeeecccC-----CceEEEEecch--hhhhhhcc-------------------cCCCcchhhheeCCCC
Confidence 4799999999999955443 35667777655 22222111 1223345677899844
Q ss_pred CCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 137 SKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
| ..++. ..+..|.+||...++.+ .-+....+ ..+..|||||+++++.... .|-.+|..+-++.. ..+..
T Consensus 77 ~--d~~atas~dk~ir~wd~r~~k~~-~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--~~~~~--- 147 (313)
T KOG1407|consen 77 P--DLFATASGDKTIRIWDIRSGKCT-ARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVN--EEQFK--- 147 (313)
T ss_pred C--cceEEecCCceEEEEEeccCcEE-EEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceee--hhccc---
Confidence 4 22333 36678999999999888 33333333 5678999999999998765 46666655433221 11110
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
-+ ...+.|+.++. +.|....-+. ++|.-|. .=
T Consensus 148 -----~e--------~ne~~w~~~nd-~Fflt~GlG~---------------------------------v~ILsyp-sL 179 (313)
T KOG1407|consen 148 -----FE--------VNEISWNNSND-LFFLTNGLGC---------------------------------VEILSYP-SL 179 (313)
T ss_pred -----ce--------eeeeeecCCCC-EEEEecCCce---------------------------------EEEEecc-cc
Confidence 00 23466885454 6666532121 2222221 00
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLD 373 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~ 373 (776)
+.+..| ..+......+.|+|||++++..+ .+.-+-+||++.--. +.++...-+ .-.-.|+.
T Consensus 180 kpv~si---------~AH~snCicI~f~p~GryfA~Gs----ADAlvSLWD~~ELiC~R~isRldwp---VRTlSFS~-- 241 (313)
T KOG1407|consen 180 KPVQSI---------KAHPSNCICIEFDPDGRYFATGS----ADALVSLWDVDELICERCISRLDWP---VRTLSFSH-- 241 (313)
T ss_pred cccccc---------ccCCcceEEEEECCCCceEeecc----ccceeeccChhHhhhheeeccccCc---eEEEEecc--
Confidence 111112 44556677899999999887765 456678899865443 333332222 11112333
Q ss_pred CCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 374 KGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 374 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
+++.+....++- -|=+....+| +..+|.-. .. ..-++|.|.--.|+|.....+
T Consensus 242 ------dg~~lASaSEDh--~IDIA~vetGd~~~eI~~~-~~-t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 242 ------DGRMLASASEDH--FIDIAEVETGDRVWEIPCE-GP-TFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ------CcceeeccCccc--eEEeEecccCCeEEEeecc-CC-ceeEEecCCCceeeEEecCCC
Confidence 233444433433 2333344443 33333221 11 122359999888888876543
No 214
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.93 E-value=2.1e-08 Score=100.37 Aligned_cols=276 Identities=9% Similarity=0.027 Sum_probs=173.4
Q ss_pred CCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCC-CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKT-CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
++.++|.| -|..|.- +.-...|++|++-+ +..-+.+. .+..++.+..|+.
T Consensus 217 vsai~~fp~~~hLlLS-----~gmD~~vklW~vy~~~~~lrtf~-----------------------gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLS-----GGMDGLVKLWNVYDDRRCLRTFK-----------------------GHRKPVRDASFNN 268 (503)
T ss_pred cchhhhccceeeEEEe-----cCCCceEEEEEEecCcceehhhh-----------------------cchhhhhhhhccc
Confidence 68899999 7766652 22235799999866 33222221 1234688899999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCceeEEeeCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
+|..++.. -+..|.+||+++|.....+..+. ......|.||++.+.++.. ..|..||..+|++.|-
T Consensus 269 ---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe------ 337 (503)
T KOG0282|consen 269 ---CGTSFLSASFDRFLKLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE------ 337 (503)
T ss_pred ---cCCeeeeeecceeeeeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH------
Confidence 99998876 67889999999999875555443 3677899999977777654 4688888888875431
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
++.+++-+..+.|-|+|++.+..+.+. .+.+|+
T Consensus 338 -----------Yd~hLg~i~~i~F~~~g~rFissSDdk------------------------------------s~riWe 370 (503)
T KOG0282|consen 338 -----------YDRHLGAILDITFVDEGRRFISSSDDK------------------------------------SVRIWE 370 (503)
T ss_pred -----------HHhhhhheeeeEEccCCceEeeeccCc------------------------------------cEEEEE
Confidence 223344466888999999988766432 356666
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC----CceEEEEEeccCceeeccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT----GQRKVILVEELDSWVNLHD 367 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~----g~~~~l~~~~~~~~~~~~~ 367 (776)
...+-...... .........+...|++++++--+ -+..|+++.+.- ...+....+...++. ..-
T Consensus 371 ~~~~v~ik~i~-------~~~~hsmP~~~~~P~~~~~~aQs----~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-~~v 438 (503)
T KOG0282|consen 371 NRIPVPIKNIA-------DPEMHTMPCLTLHPNGKWFAAQS----MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-CQV 438 (503)
T ss_pred cCCCccchhhc-------chhhccCcceecCCCCCeehhhc----cCceEEEEecccccccCHhhhhcceeccCce-eeE
Confidence 65554433322 22334455678889998655333 234455555322 112222333333332 123
Q ss_pred ccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 368 CFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
.|+| +++++...+.+| .++.||-.+-+ ...+..++..+.+.. |.|.....+++...++. +.+|
T Consensus 439 ~fSp--------DG~~l~SGdsdG--~v~~wdwkt~kl~~~lkah~~~ci~v~-wHP~e~Skvat~~w~G~--Ikiw 502 (503)
T KOG0282|consen 439 DFSP--------DGRTLCSGDSDG--KVNFWDWKTTKLVSKLKAHDQPCIGVD-WHPVEPSKVATCGWDGL--IKIW 502 (503)
T ss_pred EEcC--------CCCeEEeecCCc--cEEEeechhhhhhhccccCCcceEEEE-ecCCCcceeEecccCce--eEec
Confidence 3555 445677777788 88888866544 344555544455544 88888777888777754 5555
No 215
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.93 E-value=2.6e-08 Score=102.69 Aligned_cols=246 Identities=16% Similarity=0.153 Sum_probs=159.1
Q ss_pred hhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc--chhhhHHHHhCCcEEE
Q 004067 515 RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT--VDMRAQYLRSKGILVW 592 (776)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~--~~~~~~~l~~~G~~v~ 592 (776)
.++..+. +.|...+++.||. +-...-.|... .+.|+|++.||...+.. .|... -..++-.|+++||.|+
T Consensus 40 ~i~~~gy-~~E~h~V~T~DgY-iL~lhRIp~~~----~~rp~Vll~HGLl~sS~---~Wv~n~p~~sLaf~LadaGYDVW 110 (403)
T KOG2624|consen 40 IIEKYGY-PVEEHEVTTEDGY-ILTLHRIPRGK----KKRPVVLLQHGLLASSS---SWVLNGPEQSLAFLLADAGYDVW 110 (403)
T ss_pred HHHHcCC-ceEEEEEEccCCe-EEEEeeecCCC----CCCCcEEEeeccccccc---cceecCccccHHHHHHHcCCcee
Confidence 3444444 7899999999998 44444445442 57899999999654432 23221 1234667899999999
Q ss_pred EECCCCCCCCchh----------hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-
Q 004067 593 KLDNRGTARRGLK----------FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD- 661 (776)
Q Consensus 593 ~~d~rg~g~~~~~----------~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~- 661 (776)
.-+.||...|.+. |......++ ...|+.+.|+++.+.. ..+++..+|||.|+.....++..+|+
T Consensus 111 LgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em---~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~ 185 (403)
T KOG2624|consen 111 LGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEM---GTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEY 185 (403)
T ss_pred eecCcCcccchhhcccCCcCCcceeecchhhh---hhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchh
Confidence 9999996543221 111111222 3568999999998875 45799999999999999999988765
Q ss_pred --ceEEEEEcCCCCCcccc------------------ccccc-------------------c------------------
Q 004067 662 --VFQCAVSGAPVTSWDGY------------------DTFYT-------------------E------------------ 684 (776)
Q Consensus 662 --~~~~~v~~~~~~~~~~~------------------~~~~~-------------------~------------------ 684 (776)
+++..++.+|+..+... ...+. .
T Consensus 186 ~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G 265 (403)
T KOG2624|consen 186 NKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVG 265 (403)
T ss_pred hhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcC
Confidence 57888888887632200 00000 0
Q ss_pred ------------ccc-CCCC---------------------------CCccchh-cCChhhhhccCCCcEEEEecCCCCc
Q 004067 685 ------------KYM-GLPS---------------------------EDPVGYE-YSSVMHHVHKMKGKLLLVHGMIDEN 723 (776)
Q Consensus 685 ------------~~~-~~~~---------------------------~~~~~~~-~~~~~~~~~~i~~P~lii~G~~D~~ 723 (776)
.+. ..|. .+...|. ...|...+.+++.|+.+.+|.+|.+
T Consensus 266 ~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l 345 (403)
T KOG2624|consen 266 WNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWL 345 (403)
T ss_pred cchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCccc
Confidence 000 0000 0111111 1234556778889999999999999
Q ss_pred cChHHHHHHHHHHHHCCCCeEEEEecCCCCC-C-CCCCcHHHHHHHHHHHHHHh
Q 004067 724 VHFRHTARLINALVAARKPYEILIFPDERHM-P-RRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 724 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~-~-~~~~~~~~~~~~~~~fl~~~ 775 (776)
+.++....+...+..... .....+++-+|. | -....++++++.+++.++..
T Consensus 346 ~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 346 ADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred CCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 999999988887754433 223336777885 2 24566889999999988753
No 216
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.93 E-value=2e-08 Score=92.17 Aligned_cols=153 Identities=18% Similarity=0.074 Sum_probs=90.8
Q ss_pred EEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCC
Q 004067 557 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 636 (776)
Q Consensus 557 vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id 636 (776)
|+++||..++.. +.|... +.+.+... +.|-.++.- ..++..-+..+.+.-...
T Consensus 1 v~IvhG~~~s~~--~HW~~w---l~~~l~~~-~~V~~~~~~---------------------~P~~~~W~~~l~~~i~~~ 53 (171)
T PF06821_consen 1 VLIVHGYGGSPP--DHWQPW---LERQLENS-VRVEQPDWD---------------------NPDLDEWVQALDQAIDAI 53 (171)
T ss_dssp EEEE--TTSSTT--TSTHHH---HHHHHTTS-EEEEEC--T---------------------S--HHHHHHHHHHCCHC-
T ss_pred CEEeCCCCCCCc--cHHHHH---HHHhCCCC-eEEeccccC---------------------CCCHHHHHHHHHHHHhhc
Confidence 688999766643 456432 35556555 777776651 112344444444431112
Q ss_pred CCcEEEEeechHHHHHHHHH-hhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEE
Q 004067 637 VGHIGLYGWSYGGYLSAITL-ARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLL 715 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~li 715 (776)
.+.++++|||+|+..++.++ ......++++++++|...-... ..+ .......+. ....+..|.++
T Consensus 54 ~~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~---------~~~----~~~~~f~~~-p~~~l~~~~~v 119 (171)
T PF06821_consen 54 DEPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE---------PFP----PELDGFTPL-PRDPLPFPSIV 119 (171)
T ss_dssp TTTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH---------CCT----CGGCCCTTS-HCCHHHCCEEE
T ss_pred CCCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc---------chh----hhccccccC-cccccCCCeEE
Confidence 34699999999999999999 6678889999999998431000 000 000011111 11122356699
Q ss_pred EecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 716 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 716 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+.+++|+.+|+..+.++++.+ ..+++.++++||..
T Consensus 120 iaS~nDp~vp~~~a~~~A~~l-----~a~~~~~~~~GHf~ 154 (171)
T PF06821_consen 120 IASDNDPYVPFERAQRLAQRL-----GAELIILGGGGHFN 154 (171)
T ss_dssp EEETTBSSS-HHHHHHHHHHH-----T-EEEEETS-TTSS
T ss_pred EEcCCCCccCHHHHHHHHHHc-----CCCeEECCCCCCcc
Confidence 999999999999999999998 35799999999965
No 217
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.93 E-value=1.9e-08 Score=93.74 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=115.6
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhcc
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 614 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~ 614 (776)
-..+..++.|... +.+|+|+|+||..-. +. .+..+.++++++||+|++|+.-... + .-
T Consensus 31 pPkpLlI~tP~~~----G~yPVilF~HG~~l~----ns---~Ys~lL~HIASHGfIVVAPQl~~~~--~---------p~ 88 (307)
T PF07224_consen 31 PPKPLLIVTPSEA----GTYPVILFLHGFNLY----NS---FYSQLLAHIASHGFIVVAPQLYTLF--P---------PD 88 (307)
T ss_pred CCCCeEEecCCcC----CCccEEEEeechhhh----hH---HHHHHHHHHhhcCeEEEechhhccc--C---------CC
Confidence 4577788888775 689999999995322 22 3445678899999999999975321 1 11
Q ss_pred CCccHHHHHHHHHHHHHc--------CCCCCCcEEEEeechHHHHHHHHHhhCC-C-ceEEEEEcCCCCCcccccccccc
Q 004067 615 GRIDAEDQLTGAEWLIKQ--------GLAKVGHIGLYGWSYGGYLSAITLARFP-D-VFQCAVSGAPVTSWDGYDTFYTE 684 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~ 684 (776)
+..++++..+.++|+.+. -..+.++++++|||.||-.|..+|..+. + .|.++|.+.|+.......
T Consensus 89 ~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~----- 163 (307)
T PF07224_consen 89 GQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK----- 163 (307)
T ss_pred chHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC-----
Confidence 233467788888888764 1246689999999999999999998763 2 378888888875432110
Q ss_pred cccCCCCCCccchhcCChhhhhccCCCcEEEEecCCC-------CccCh--HHHHHHHHHHHHCCCCeEEEEecCCCCC
Q 004067 685 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMID-------ENVHF--RHTARLINALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D-------~~v~~--~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
.++.. ...+.| ..-++..|+++|-..-- .-|.| -+-+++++.++ .++..++-.+-||.
T Consensus 164 ---~t~P~----iLty~p--~SF~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk---~p~~hfV~~dYGHm 230 (307)
T PF07224_consen 164 ---QTPPP----ILTYVP--QSFDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECK---PPCAHFVAKDYGHM 230 (307)
T ss_pred ---CCCCC----eeecCC--cccccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhc---ccceeeeecccccc
Confidence 11100 001111 11244578888764333 11222 25578888773 56667777788886
No 218
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=2.2e-06 Score=83.76 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=157.7
Q ss_pred CCcEEEEeCCCC--ccce-ecCCCCCCCccCceeCCCCCEEEEEECC----c--EEEEecCCCceeEEeeCCCCCceecC
Q 004067 147 PDGIYFQDLSCS--KPEL-KLSSSSCSPVIDPHLSSDGTMIAFVRDC----E--LHVLNLLINEQRQLTHGANGNTVTHG 217 (776)
Q Consensus 147 ~~~l~~~d~~~~--~~~~-~l~~~~~~~~~~~~~SpDg~~la~~~~~----~--l~~~~l~~g~~~~lt~~~~~~~~~~~ 217 (776)
...||.|++++. +... .+.... .....+.|+|+++.|..+... . -|.+|..+|....+-..... |
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~-~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~-----g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAEL-GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP-----G 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhcccc-CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-----C
Confidence 346787777643 3331 122222 236778999999987666543 2 57777777887776543221 1
Q ss_pred CcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce
Q 004067 218 LAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV 297 (776)
Q Consensus 218 ~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 297 (776)
.+ ..-++.++||+.|+.+....+.+..+.+...+.-. ... -+..-.++..
T Consensus 89 ~~----------p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~------------------~~v--~~~~h~g~~p 138 (346)
T COG2706 89 SP----------PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ------------------PVV--QVVKHTGSGP 138 (346)
T ss_pred CC----------CeEEEECCCCCEEEEEEccCceEEEEEcccCCccc------------------cce--eeeecCCCCC
Confidence 11 12467899999887776554443333332222111 000 0010000000
Q ss_pred EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceeecccccccCCCCc
Q 004067 298 SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGV 376 (776)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 376 (776)
. ......+.-...+.|||++|+... - +.-.|++|+++.|..+........ +.-.-+=.|.|
T Consensus 139 ~----------~rQ~~~h~H~a~~tP~~~~l~v~D-L--G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp----- 200 (346)
T COG2706 139 H----------ERQESPHVHSANFTPDGRYLVVPD-L--GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP----- 200 (346)
T ss_pred C----------ccccCCccceeeeCCCCCEEEEee-c--CCceEEEEEcccCccccccccccCCCCCcceEEEcC-----
Confidence 0 011112344578999998665542 3 334588888887776655433211 00000112333
Q ss_pred cccCCeEEE-EeccCCceEEEEEeCCCceeeccccC-----C---eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 377 TKYSGGFIW-ASEKTGFRHLYLHDINGTCLGPITEG-----D---WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 377 ~~~~~~~~~-~s~~~g~~~l~~~~~~g~~~~~lt~~-----~---~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.++++| +.+-++.-.+|.++..+++...|... + ..-...+..++||++||..-...+. +.++.++.
T Consensus 201 ---n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds--I~~f~V~~ 275 (346)
T COG2706 201 ---NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS--IAVFSVDP 275 (346)
T ss_pred ---CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe--EEEEEEcC
Confidence 334544 55557755666666665665544221 1 1122345689999998887665543 77888876
Q ss_pred CCCCCCccccceeecC--CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 448 YPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 448 ~~~g~~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
.|.. + .....+. +.......++|+|+.|+.....++. -.+|.+|-.+|..
T Consensus 276 --~~g~-L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L 327 (346)
T COG2706 276 --DGGK-L-ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRL 327 (346)
T ss_pred --CCCE-E-EEEEEeccCCcCCccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceE
Confidence 4331 1 1222222 2224578999999999998876665 4677777777763
No 219
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.92 E-value=1.6e-07 Score=103.50 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=106.5
Q ss_pred CccCceeCCCCCEEEEEEC---------CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCe
Q 004067 171 PVIDPHLSSDGTMIAFVRD---------CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKF 241 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~~---------~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~ 241 (776)
.+..+++||||+++||+.. .+||+.+. +++.++++.... ...++|||||+.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~-------------------~t~PsWspDG~~ 410 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHS-------------------LTRPSWSLDADA 410 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCC-------------------CCCceECCCCCc
Confidence 4678999999999999982 26999986 555577765432 336889999999
Q ss_pred EEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe
Q 004067 242 IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW 321 (776)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (776)
|+|...... ...+... ....++++.++++++... .. ...+..+.|
T Consensus 411 lw~v~dg~~---~~~v~~~---------------------~~~gql~~~~vd~ge~~~-~~----------~g~Issl~w 455 (591)
T PRK13616 411 VWVVVDGNT---VVRVIRD---------------------PATGQLARTPVDASAVAS-RV----------PGPISELQL 455 (591)
T ss_pred eEEEecCcc---eEEEecc---------------------CCCceEEEEeccCchhhh-cc----------CCCcCeEEE
Confidence 999863211 1111100 012467878888777654 22 234888999
Q ss_pred ccCCeEEEEEEeecCceEEEEE---EECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEE
Q 004067 322 MHGNILTAQVLNRSQTKLKVLK---FDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLH 398 (776)
Q Consensus 322 SpDg~~l~~~~~~~~~~~~l~~---~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~ 398 (776)
||||+.|++... .+|++ .....|+ ..+++...- ..........+.|.+++-+++...++...+|.+
T Consensus 456 SpDG~RiA~i~~-----g~v~Va~Vvr~~~G~-~~l~~~~~l-----~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 456 SRDGVRAAMIIG-----GKVYLAVVEQTEDGQ-YALTNPREV-----GPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred CCCCCEEEEEEC-----CEEEEEEEEeCCCCc-eeecccEEe-----ecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence 999998888762 24666 5556666 344221000 000000001124544443334445666789999
Q ss_pred eCCCceeeccccC
Q 004067 399 DINGTCLGPITEG 411 (776)
Q Consensus 399 ~~~g~~~~~lt~~ 411 (776)
+++|...+.+...
T Consensus 525 ~vDG~~~~~~~~~ 537 (591)
T PRK13616 525 NLDGSNSDALPSR 537 (591)
T ss_pred ecCCccccccCCC
Confidence 9998876665443
No 220
>COG0627 Predicted esterase [General function prediction only]
Probab=98.92 E-value=1.5e-08 Score=101.72 Aligned_cols=214 Identities=18% Similarity=0.083 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCC--------------CCCCC-chhhhhhhhhccCC
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR--------------GTARR-GLKFEASIKHNCGR 616 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r--------------g~g~~-~~~~~~~~~~~~~~ 616 (776)
++.|+++++||..+.. +.+. ....+-......|.+++++|-. |.+.+ -.++..... ..+.
T Consensus 52 ~~ipV~~~l~G~t~~~---~~~~-~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~-~~~~ 126 (316)
T COG0627 52 RDIPVLYLLSGLTCNE---PNVY-LLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPW-ASGP 126 (316)
T ss_pred CCCCEEEEeCCCCCCC---CceE-eccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCcc-ccCc
Confidence 6789999999965442 1121 1222345566789999988432 21111 001111100 0001
Q ss_pred ccHHHHHH--HHHHHHHcCCCCC--CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc---------c--ccc
Q 004067 617 IDAEDQLT--GAEWLIKQGLAKV--GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------Y--DTF 681 (776)
Q Consensus 617 ~~~~D~~~--~i~~l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------~--~~~ 681 (776)
+..++++. .-..+.+...++. ++.+|+||||||+-|+.+|+++|++|+.+...+|+.+... . ...
T Consensus 127 ~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~ 206 (316)
T COG0627 127 YQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGK 206 (316)
T ss_pred cchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCc
Confidence 22233221 1223333343444 3899999999999999999999999999999999877541 1 111
Q ss_pred ccccccCCCCCCccchhcCChhhhhcc--------------CCCcEEEEecCCCCccC--hHHHHHHHHHHHHCCCCeEE
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHK--------------MKGKLLLVHGMIDENVH--FRHTARLINALVAARKPYEI 745 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~ 745 (776)
..+.+++... ...+.++++...+.+ ...++++-+|..|.... ......+.+++++.+.+..+
T Consensus 207 ~~~~~~G~~~--~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~ 284 (316)
T COG0627 207 AFNAMLGPDS--DPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGV 284 (316)
T ss_pred cHHHhcCCCc--cccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCcee
Confidence 1122223221 124555566555543 34678888999987764 34578899999999999999
Q ss_pred EEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 746 LIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 746 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
...++.+|.+.. ....++..+.|+...
T Consensus 285 ~~~~~G~Hsw~~---w~~~l~~~~~~~a~~ 311 (316)
T COG0627 285 RDQPGGDHSWYF---WASQLADHLPWLAGA 311 (316)
T ss_pred eeCCCCCcCHHH---HHHHHHHHHHHHHHH
Confidence 999899997643 455567777777654
No 221
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.91 E-value=5.6e-08 Score=88.30 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=92.0
Q ss_pred HHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhc
Q 004067 623 LTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEY 699 (776)
Q Consensus 623 ~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (776)
...+..|..+ ..++.+||++-|+||||.++++++..++....+.+..+++..... . ..+. +..
T Consensus 75 a~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~------~---~~~~-----~~~ 140 (206)
T KOG2112|consen 75 ADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS------I---GLPG-----WLP 140 (206)
T ss_pred HHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch------h---hccC-----Ccc
Confidence 3444444443 457889999999999999999999998776666666665532100 0 0000 000
Q ss_pred CChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 700 SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 700 ~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.. + ..|++..||+.|+.||..-.+...+.|+..+..+++..|++.+|... .+.+..+..|+.+
T Consensus 141 -----~~-~-~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 141 -----GV-N-YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLKSWIKT 203 (206)
T ss_pred -----cc-C-cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHHHHHHH
Confidence 00 0 57999999999999999999999999999999999999999999763 2345778888765
No 222
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.90 E-value=1.1e-07 Score=81.10 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=104.8
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCC--CchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR--RGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~--~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..-+||+.||.+.+.. .......+..|+.+|+.|.-++++=... .++.-...... ..-...+.++..+.
T Consensus 13 ~~~tilLaHGAGasmd-----St~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~----t~~~~~~~~~aql~ 83 (213)
T COG3571 13 APVTILLAHGAGASMD-----STSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSG----TLNPEYIVAIAQLR 83 (213)
T ss_pred CCEEEEEecCCCCCCC-----CHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccc----cCCHHHHHHHHHHH
Confidence 3357889999655433 1233445778999999999998752211 11000000000 11223455566666
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEc-CCCCCcccccccccccccCCCCCCccchhcCChhhhhccC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 709 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 709 (776)
+.. +..++++-|+||||-++.+++..-...+.+.+++ .|+.. -+.|+. -...++..+
T Consensus 84 ~~l--~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------pGKPe~--------~Rt~HL~gl 141 (213)
T COG3571 84 AGL--AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------PGKPEQ--------LRTEHLTGL 141 (213)
T ss_pred hcc--cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------CCCccc--------chhhhccCC
Confidence 543 5568999999999999999887543335666653 33321 022221 124678899
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+.|+||.||+.|+.-...+. .... ...+++++++.++.|..
T Consensus 142 ~tPtli~qGtrD~fGtr~~V---a~y~--ls~~iev~wl~~adHDL 182 (213)
T COG3571 142 KTPTLITQGTRDEFGTRDEV---AGYA--LSDPIEVVWLEDADHDL 182 (213)
T ss_pred CCCeEEeecccccccCHHHH---Hhhh--cCCceEEEEeccCcccc
Confidence 99999999999998766544 2222 24689999999999986
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.87 E-value=7.7e-07 Score=85.03 Aligned_cols=319 Identities=12% Similarity=0.103 Sum_probs=170.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+-|+.|..+|.-....+ +.|.+|++..-+-..-.+.. ..|+.+..|||
T Consensus 51 i~yieW~ads~~ilC~~yk~----~~vqvwsl~Qpew~ckIdeg-----------------------~agls~~~WSP-- 101 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKD----PKVQVWSLVQPEWYCKIDEG-----------------------QAGLSSISWSP-- 101 (447)
T ss_pred hhheeeeccceeeeeeeecc----ceEEEEEeecceeEEEeccC-----------------------CCcceeeeECC--
Confidence 47788999999987655433 46999999877664444321 25788899999
Q ss_pred CCceEEEEeCC--CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc---------------EEEEecCC
Q 004067 137 SKKKIIMVPLP--DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE---------------LHVLNLLI 199 (776)
Q Consensus 137 ~dg~~l~~~~~--~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~---------------l~~~~l~~ 199 (776)
||+.|+.... ..|-+|.+.+.+.. .+..... .....+|.|||+..+..++.+ +-.++++|
T Consensus 102 -dgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~-~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT 178 (447)
T KOG4497|consen 102 -DGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKT-NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT 178 (447)
T ss_pred -CcceEeeeecceeEEEEEEeccceeE-Eeccccc-CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc
Confidence 9999987744 45778999888776 5554443 367889999999988887642 11222222
Q ss_pred CceeEEeeCCCCC--ceecCCccc---ceecccCCcceEEECCCCCeEEEEEecCCCCC----eE-EEeecCCCCCC--C
Q 004067 200 NEQRQLTHGANGN--TVTHGLAEY---IAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIP----RF-RIMHQGKSSVG--S 267 (776)
Q Consensus 200 g~~~~lt~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~----~~-~~~~~~~~~~~--~ 267 (776)
-..+-+.-.+.+. ......-++ .++-.. .+....|||-++.|+..+.|.--.- .+ .+..+.+-..+ +
T Consensus 179 ~DltgieWsPdg~~laVwd~~Leykv~aYe~~l-G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp 257 (447)
T KOG4497|consen 179 IDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL-GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDP 257 (447)
T ss_pred ccccCceECCCCcEEEEecchhhheeeeeeecc-ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCc
Confidence 2111111111110 000000000 111111 1345678888888887766532100 00 01111110000 0
Q ss_pred C--------------CcceecCCCCCCCCCeEEEEEEEcCCCc------eEEEEcccCCC-CCCCCcceEEEEEeccCCe
Q 004067 268 E--------------AQEDHAYPFAGASNVKVRLGVVSAAGGP------VSWMDLQCGGT-DQNYDEEYLARVNWMHGNI 326 (776)
Q Consensus 268 ~--------------~~~~~~~~~~g~~~~~~~l~~~d~~~~~------~~~l~~~~~~~-~~~~~~~~~~~~~~SpDg~ 326 (776)
. ...-..|+.. +.....|....-. ...+... +++ ..+...-.+.-++||+|..
T Consensus 258 ~~~~~~ke~~~~~ql~~~cLsf~p~-----~~~a~~~~~se~~YE~~~~pv~~~~l-kp~tD~pnPk~g~g~lafs~Ds~ 331 (447)
T KOG4497|consen 258 TLHLLEKETFSIVQLLHHCLSFTPT-----DLEAHIWEESETIYEQQMTPVKVHKL-KPPTDFPNPKCGAGKLAFSCDST 331 (447)
T ss_pred hhhhhhhhhcchhhhcccccccCCC-----ccccCccccchhhhhhhhcceeeecc-cCCCCCCCcccccceeeecCCce
Confidence 0 0000112111 1111122111000 0001000 111 1122244577899999997
Q ss_pred EEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCe--EEEEeccCCceEEEEEeCCCce
Q 004067 327 LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
+++... +.-...||+||+..-+...+.....+.- .+-|+++. ++... |..+||.|.++|--
T Consensus 332 y~aTrn--d~~PnalW~Wdlq~l~l~avLiQk~pir------------af~WdP~~prL~vct---g~srLY~W~psg~~ 394 (447)
T KOG4497|consen 332 YAATRN--DKYPNALWLWDLQNLKLHAVLIQKHPIR------------AFEWDPGRPRLVVCT---GKSRLYFWAPSGPR 394 (447)
T ss_pred EEeeec--CCCCceEEEEechhhhhhhhhhhcccee------------EEEeCCCCceEEEEc---CCceEEEEcCCCce
Confidence 665442 2245689999998877666555443311 01344443 33332 44589999999977
Q ss_pred eeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 405 LGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 405 ~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
...+....+.+..+. |..+|..|+..+
T Consensus 395 ~V~vP~~GF~i~~l~-W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 395 VVGVPKKGFNIQKLQ-WLQPGEFIVLCG 421 (447)
T ss_pred EEecCCCCceeeeEE-ecCCCcEEEEEc
Confidence 777777778887775 888888766654
No 224
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.5e-07 Score=89.43 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=86.6
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEec---CCCceeEEeeCCCCCceecCCccc
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNL---LINEQRQLTHGANGNTVTHGLAEY 221 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l---~~g~~~~lt~~~~~~~~~~~~~~~ 221 (776)
.+.+|.+|++.|.... .+...... ....+.||||+.||...- .++.+|.+ .+|+.+.+..-- -+.|..
T Consensus 207 ~dt~i~lw~lkGq~L~-~idtnq~~-n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf----~LkGH~-- 278 (420)
T KOG2096|consen 207 LDTKICLWDLKGQLLQ-SIDTNQSS-NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF----SLKGHQ-- 278 (420)
T ss_pred CCCcEEEEecCCceee-eecccccc-ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh----eeccch--
Confidence 4456778888865555 55444432 566899999999887653 46777654 234332221100 001111
Q ss_pred ceecccCCcceEEECCCCCeEEEEEecCCCCCeEEE--eecCCCCCCCCCccee--------------cCCCCCCCCC--
Q 004067 222 IAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRI--MHQGKSSVGSEAQEDH--------------AYPFAGASNV-- 283 (776)
Q Consensus 222 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~g~~~~-- 283 (776)
..+..++|||++++++.++.|.. ...|.. .+.-.+ .+...... .....|+..+
T Consensus 279 ------saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~q--Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 279 ------SAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQ--DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred ------hheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCC--CchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 11457889999999998886654 111211 111111 01111111 1111122111
Q ss_pred -eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 284 -KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 284 -~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
...|.++..++|+...-- ..-+...|..++|++||++++...
T Consensus 350 ~gs~l~~~~se~g~~~~~~-------e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 350 FGSDLKVFASEDGKDYPEL-------EDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred cCCceEEEEcccCccchhH-------HHhhcCceeeEEecCCCcEEeeec
Confidence 134667776666533210 134567899999999999887664
No 225
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.87 E-value=5.6e-07 Score=83.57 Aligned_cols=197 Identities=12% Similarity=0.050 Sum_probs=122.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.+.+++.-||..|.-.+.+. ..+||.-. +|...-..-. +...+-....+-
T Consensus 13 lTqiKyN~eGDLlFscaKD~---~~~vw~s~-nGerlGty~G------------------------HtGavW~~Did~-- 62 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDS---TPTVWYSL-NGERLGTYDG------------------------HTGAVWCCDIDW-- 62 (327)
T ss_pred cceEEecCCCcEEEEecCCC---CceEEEec-CCceeeeecC------------------------CCceEEEEEecC--
Confidence 37888888998775544433 35666442 2322211111 112343444444
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCCCc--------
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLINE-------- 201 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~-------- 201 (776)
|.++++.. .+..+.+||+++|+....+. .+. .+....||++|..++++.+. -|.++++..-.
T Consensus 63 -~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 63 -DSKHLITGSADQTAKLWDVETGKQLATWK-TNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred -CcceeeeccccceeEEEEcCCCcEEEEee-cCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 66767654 67789999999999873333 333 47889999999999999874 36777766322
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
...+..... .+...-|+|-|+.|++...+
T Consensus 140 ~~kI~t~~s------------------kit~a~Wg~l~~~ii~Ghe~--------------------------------- 168 (327)
T KOG0643|consen 140 YLKIPTPDS------------------KITSALWGPLGETIIAGHED--------------------------------- 168 (327)
T ss_pred eEEecCCcc------------------ceeeeeecccCCEEEEecCC---------------------------------
Confidence 122221111 13456699999999875432
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
..|-.||+.+|+...-.. ..+...|.++.+|||..+.+..+ .+..-.++|..+-+.
T Consensus 169 ---G~is~~da~~g~~~v~s~-------~~h~~~Ind~q~s~d~T~FiT~s----~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 169 ---GSISIYDARTGKELVDSD-------EEHSSKINDLQFSRDRTYFITGS----KDTTAKLVDVRTLEV 224 (327)
T ss_pred ---CcEEEEEcccCceeeech-------hhhccccccccccCCcceEEecc----cCccceeeeccceee
Confidence 347889999886543322 34556889999999997554443 344556778777554
No 226
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.85 E-value=1.4e-06 Score=94.39 Aligned_cols=295 Identities=11% Similarity=0.100 Sum_probs=173.9
Q ss_pred cCCCCEEEEEeCCCCcCcceEEEEecC--CCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCc
Q 004067 63 SPDDNLITYLLSPDHSLSRKVFSFDPK--TCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKK 139 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~~~l~~~~~~--~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg 139 (776)
...|.+.+|.....+....-+|+.... ++.. +.|.+... ++.++. ..-+..+.+|| ||
T Consensus 75 ~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~-------l~~~~~---------~~~~~~~~~Sp---dg 135 (414)
T PF02897_consen 75 VRRGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNE-------LAKDGG---------YVSLGGFSVSP---DG 135 (414)
T ss_dssp EEETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGG-------GSTTSS----------EEEEEEEETT---TS
T ss_pred EEECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchH-------hhccCc---------eEEeeeeeECC---CC
Confidence 456778888776555545678888877 4554 77776432 221110 01123567777 99
Q ss_pred eEEEEeC--C----CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC------------CcEEEEecCCCc
Q 004067 140 KIIMVPL--P----DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD------------CELHVLNLLINE 201 (776)
Q Consensus 140 ~~l~~~~--~----~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~------------~~l~~~~l~~g~ 201 (776)
++++|.. . ..|+++|+++|+......... ....+.|++||+.+.|+.. .+||.+.+.++.
T Consensus 136 ~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 136 KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G
T ss_pred CEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh
Confidence 9999982 2 248999999997651111111 1223899999999999973 248999998886
Q ss_pred ee--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 202 QR--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 202 ~~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
.. .+....... . | ...+..|+||+.|+..+.....
T Consensus 214 ~~d~lvfe~~~~~-~------~--------~~~~~~s~d~~~l~i~~~~~~~---------------------------- 250 (414)
T PF02897_consen 214 SEDELVFEEPDEP-F------W--------FVSVSRSKDGRYLFISSSSGTS---------------------------- 250 (414)
T ss_dssp GG-EEEEC-TTCT-T------S--------EEEEEE-TTSSEEEEEEESSSS----------------------------
T ss_pred HhCeeEEeecCCC-c------E--------EEEEEecCcccEEEEEEEcccc----------------------------
Confidence 54 443333221 0 0 1256789999988776543211
Q ss_pred CCCCeEEEEEEEcCCC-----ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc---e
Q 004067 280 ASNVKVRLGVVSAAGG-----PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ---R 351 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~---~ 351 (776)
...+++.++..+ +.+.+... .......+... |..+++.++.+.....|+.++++... .
T Consensus 251 ----~s~v~~~d~~~~~~~~~~~~~l~~~--------~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~ 316 (414)
T PF02897_consen 251 ----ESEVYLLDLDDGGSPDAKPKLLSPR--------EDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEW 316 (414)
T ss_dssp ----EEEEEEEECCCTTTSS-SEEEEEES--------SSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGE
T ss_pred ----CCeEEEEeccccCCCcCCcEEEeCC--------CCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccc
Confidence 267899999875 55555331 22222223332 54667777887788999999998876 3
Q ss_pred E-EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCC-CceeeccccCCeE-EEEEEeecCCCcEE
Q 004067 352 K-VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN-GTCLGPITEGDWM-VEQIVGVNEASGQV 428 (776)
Q Consensus 352 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~-g~~~~~lt~~~~~-~~~~~~~s~dg~~i 428 (776)
+ .+..+........ + ....+.+++....++...|+++++. +.....+...... +... ..++++..+
T Consensus 317 ~~~l~~~~~~~~l~~---~-------~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~-~~~~~~~~~ 385 (414)
T PF02897_consen 317 WTVLIPEDEDVSLED---V-------SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGV-SGDFDSDEL 385 (414)
T ss_dssp EEEEE--SSSEEEEE---E-------EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEE-ES-TT-SEE
T ss_pred eeEEcCCCCceeEEE---E-------EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEecc-CCCCCCCEE
Confidence 4 4555443322221 1 2224567777778999999999999 7766666554322 3333 356777778
Q ss_pred EEEEcc-CCCceeeEEEEEeC
Q 004067 429 YFTGTL-DGPLESHLYCAKLY 448 (776)
Q Consensus 429 ~~~~~~-~~~~~~~l~~~~~~ 448 (776)
+|..+. ..| ..+|.+++.
T Consensus 386 ~~~~ss~~~P--~~~y~~d~~ 404 (414)
T PF02897_consen 386 RFSYSSFTTP--PTVYRYDLA 404 (414)
T ss_dssp EEEEEETTEE--EEEEEEETT
T ss_pred EEEEeCCCCC--CEEEEEECC
Confidence 877554 445 689999985
No 227
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.85 E-value=2.6e-07 Score=88.09 Aligned_cols=221 Identities=15% Similarity=0.075 Sum_probs=117.7
Q ss_pred CceEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEE-EEECCCC--
Q 004067 523 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV-WKLDNRG-- 598 (776)
Q Consensus 523 ~~~~~~~~~~-dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v-~~~d~rg-- 598 (776)
..+...+.+. .|.....++..|++.... .+||||+++.|..-.... .......+++.-..+ +.+.++.
T Consensus 8 ~~~~~~l~s~~~~~~yri~i~~P~~~~~~-~~YpVlY~lDGn~vf~~~-------~~~~~~~~~~~~~~~iv~iGye~~~ 79 (264)
T COG2819 8 HFRERDLKSANTGRKYRIFIATPKNYPKP-GGYPVLYMLDGNAVFNAL-------TEIMLRILADLPPPVIVGIGYETIL 79 (264)
T ss_pred cceeEeeeecCCCcEEEEEecCCCCCCCC-CCCcEEEEecchhhhchH-------HHHhhhhhhcCCCceEEEecccccc
Confidence 4555556655 457789999999987433 459999998884221110 011122233322111 1122211
Q ss_pred -------CCCCchhh----hhhh----hhccCC-c-cHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 599 -------TARRGLKF----EASI----KHNCGR-I-DAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 599 -------~g~~~~~~----~~~~----~~~~~~-~-~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
..++.... .... ....|. . -.+-+...+.-+++. ..++.++.+|+|||+||.+++.+...+|
T Consensus 80 ~~~~~~r~~DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p 159 (264)
T COG2819 80 VFDPNRRAYDYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYP 159 (264)
T ss_pred ccccccccccCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCc
Confidence 11111100 0000 111111 1 123344444444443 5688899999999999999999999999
Q ss_pred CceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEec--CCCCcc------ChHHHHHH
Q 004067 661 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHG--MIDENV------HFRHTARL 732 (776)
Q Consensus 661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G--~~D~~v------~~~~~~~~ 732 (776)
+.|.+.++.+|...|.... ........... + ..++++..| +.|... ....+.+.
T Consensus 160 ~~F~~y~~~SPSlWw~n~~----------------~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 160 DCFGRYGLISPSLWWHNEA----------------ILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred chhceeeeecchhhhCCHH----------------HhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 9999999999986553211 01011111111 1 334444444 333321 22445555
Q ss_pred HHHHHH-CCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 733 INALVA-ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 733 ~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.+.+.+ .+....+..+|+.+|.-. .-..+...+.|+.
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 566666 677888999998888642 2233444555543
No 228
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.84 E-value=1.9e-07 Score=94.33 Aligned_cols=275 Identities=11% Similarity=0.065 Sum_probs=153.6
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc----eecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE----LKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~----~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~ 199 (776)
-+.+..+.| .|-+++.. .+.++..||+.+=... +.|.+.+...+...+|||.|..|+.++.. +..++|-++
T Consensus 169 ~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 467888999 99999876 7889999999874433 25656565568899999999999888754 566666665
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
-+......+.. +..... ....+..-...-.|.|+.+..+......
T Consensus 246 ~~~~e~~KGDQ---YI~Dm~--nTKGHia~lt~g~whP~~k~~FlT~s~D------------------------------ 290 (641)
T KOG0772|consen 246 FEIVEFSKGDQ---YIRDMY--NTKGHIAELTCGCWHPDNKEEFLTCSYD------------------------------ 290 (641)
T ss_pred ceeeeeeccch---hhhhhh--ccCCceeeeeccccccCcccceEEecCC------------------------------
Confidence 54443322111 100000 0000001122335999998777665433
Q ss_pred CCCCeEEEEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 280 ASNVKVRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..|.+||++.-+ ...+... . ..+..-.+...+|+|||+.|+... .++.|-.|+..+-..+..
T Consensus 291 -----gtlRiWdv~~~k~q~qVik~k--~--~~g~Rv~~tsC~~nrdg~~iAagc----~DGSIQ~W~~~~~~v~p~--- 354 (641)
T KOG0772|consen 291 -----GTLRIWDVNNTKSQLQVIKTK--P--AGGKRVPVTSCAWNRDGKLIAAGC----LDGSIQIWDKGSRTVRPV--- 354 (641)
T ss_pred -----CcEEEEecCCchhheeEEeec--c--CCCcccCceeeecCCCcchhhhcc----cCCceeeeecCCcccccc---
Confidence 346778776543 2222211 0 011223456789999999877665 455677787522111111
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
+.+-+ ....|. .+..+ .||.||++|+-.+..+ .
T Consensus 355 --------------------------~~vk~---------AH~~g~----------~Itsi-~FS~dg~~LlSRg~D~-t 387 (641)
T KOG0772|consen 355 --------------------------MKVKD---------AHLPGQ----------DITSI-SFSYDGNYLLSRGFDD-T 387 (641)
T ss_pred --------------------------eEeee---------ccCCCC----------ceeEE-EeccccchhhhccCCC-c
Confidence 11110 011111 22333 3999999766555443 3
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC--CCCCCEEEEEEcCCCceeEee
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS--LDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~i~~~~~~~~~~~~~l 506 (776)
.++|.+.-- +.++...+-|.+.-......||||.+-|+...+. ..+++.|+.+|..+-+.+..+
T Consensus 388 --LKvWDLrq~---kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 388 --LKVWDLRQF---KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred --eeeeecccc---ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 789988741 1111111222222122357999999877665543 355677888886555444333
No 229
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.83 E-value=9.7e-08 Score=92.14 Aligned_cols=206 Identities=16% Similarity=0.068 Sum_probs=114.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC----CcEEEEECCCCCC
Q 004067 525 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK----GILVWKLDNRGTA 600 (776)
Q Consensus 525 ~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~----G~~v~~~d~rg~g 600 (776)
+.+.+...-..+....+|.|.+. ....++|++++.||--.... . ......+.+... .-+++.+|+--.-
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy-~~~~k~pvl~~~DG~~~~~~-----g-~i~~~~dsli~~g~i~pai~vgid~~d~~ 142 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGY-NPLEKYPVLYLQDGQDWFRS-----G-RIPRILDSLIAAGEIPPAILVGIDYIDVK 142 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCC-CccccccEEEEeccHHHHhc-----C-ChHHHHHHHHHcCCCCCceEEecCCCCHH
Confidence 33334333234466666777665 23368999999999322221 1 111223344433 4678888874211
Q ss_pred CCchhhhhhhhhccCCccHHHH-HHHHHHHHHcC--CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCccc
Q 004067 601 RRGLKFEASIKHNCGRIDAEDQ-LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG 677 (776)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~D~-~~~i~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~ 677 (776)
.... ..... ......+ .+.+=++.+.. .-+.+.-+++|.|+||..+++++.++|++|..++..+|..++..
T Consensus 143 ~R~~-----~~~~n-~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~ 216 (299)
T COG2382 143 KRRE-----ELHCN-EAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTP 216 (299)
T ss_pred HHHH-----Hhccc-HHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCc
Confidence 1111 10100 0001111 12222333332 13556788999999999999999999999999999999987643
Q ss_pred ccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC
Q 004067 678 YDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 756 (776)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 756 (776)
....- + .......+....+.....-++...++.+.+.+ ...++++.|.+.+.+..+..|+| ||...
T Consensus 217 ~~~~~-~---------~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~~--pNr~L~~~L~~~g~~~~yre~~G-gHdw~ 282 (299)
T COG2382 217 LDTQP-Q---------GEVAESLKILHAIGTDERIVLTTGGEEGDFLR--PNRALAAQLEKKGIPYYYREYPG-GHDWA 282 (299)
T ss_pred ccccc-c---------cchhhhhhhhhccCccceEEeecCCccccccc--hhHHHHHHHHhcCCcceeeecCC-CCchh
Confidence 32110 0 00011111112222222323333344444444 46889999999999999999999 99653
No 230
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.82 E-value=1.9e-08 Score=100.94 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=77.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhH-HHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
..|++|++||..++.. ..|. ..++. ++...+|.|+++|+++.+... +...... . ....+++...++.+.+
T Consensus 35 ~~p~vilIHG~~~~~~--~~~~---~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~~~-~-~~v~~~la~~l~~L~~ 105 (275)
T cd00707 35 SRPTRFIIHGWTSSGE--ESWI---SDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAVNN-T-RVVGAELAKFLDFLVD 105 (275)
T ss_pred CCCcEEEEcCCCCCCC--CcHH---HHHHHHHHhcCCCEEEEEECccccccC--hHHHHHh-H-HHHHHHHHHHHHHHHH
Confidence 4589999999766531 2232 11233 444578999999999763322 1111110 0 0113567778888877
Q ss_pred cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 632 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 632 ~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
...++.+++.++||||||++|..++.+.+++++.++++.|...
T Consensus 106 ~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 106 NTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred hcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 6555778999999999999999999999999999999887643
No 231
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.81 E-value=1.7e-07 Score=94.60 Aligned_cols=194 Identities=18% Similarity=0.157 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhC--CcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
|.|+++||.++... .|.. ....+... .|.++.+|+||+|.+. .. ..........+..+.+.
T Consensus 22 ~~i~~~hg~~~~~~---~~~~----~~~~~~~~~~~~~~~~~d~~g~g~s~-~~---------~~~~~~~~~~~~~~~~~ 84 (282)
T COG0596 22 PPLVLLHGFPGSSS---VWRP----VFKVLPALAARYRVIAPDLRGHGRSD-PA---------GYSLSAYADDLAALLDA 84 (282)
T ss_pred CeEEEeCCCCCchh---hhHH----HHHHhhccccceEEEEecccCCCCCC-cc---------cccHHHHHHHHHHHHHH
Confidence 58999999876644 2221 11222221 1999999999999886 10 00112223334444443
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC------------c-ccc------cccc-----------
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS------------W-DGY------DTFY----------- 682 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~------------~-~~~------~~~~----------- 682 (776)
. ...++.++||||||.+++.++.++|+.++++++.++... . ... ....
T Consensus 85 ~--~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (282)
T COG0596 85 L--GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAAFAALLAA 162 (282)
T ss_pred h--CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCCcccccCccccCccccchhhhhhhhhccchhhhhhhhhc
Confidence 2 223499999999999999999999999999888775432 0 000 0000
Q ss_pred ---cccccC------C---CCCCccc------------hh-----cC--ChhhhhccCCCcEEEEecCCCCccChHHHHH
Q 004067 683 ---TEKYMG------L---PSEDPVG------------YE-----YS--SVMHHVHKMKGKLLLVHGMIDENVHFRHTAR 731 (776)
Q Consensus 683 ---~~~~~~------~---~~~~~~~------------~~-----~~--~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~ 731 (776)
...... . ....... .. .. .......++..|+++++|..|...+......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~~~~~~~ 242 (282)
T COG0596 163 LGLLAALAAAARAGLAEALRAPLLGAAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARR 242 (282)
T ss_pred ccccccccccchhccccccccccchhHhhhhhhhcccccchhhhcccccccchhhccCCCCeEEEecCCCCcCCHHHHHH
Confidence 000000 0 0000000 00 00 1112344556899999999996666554334
Q ss_pred HHHHHHHCCC-CeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 732 LINALVAARK-PYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 732 ~~~~l~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
+.+.+ . ..++.++++++|.. ..+....+.+.+.+|+
T Consensus 243 ~~~~~----~~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~~~ 279 (282)
T COG0596 243 LAAAL----PNDARLVVIPGAGHFP-HLEAPEAFAAALLAFL 279 (282)
T ss_pred HHhhC----CCCceEEEeCCCCCcc-hhhcHHHHHHHHHHHH
Confidence 43333 3 47899999999987 4555667777777643
No 232
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=1.4e-06 Score=82.95 Aligned_cols=283 Identities=12% Similarity=0.071 Sum_probs=148.1
Q ss_pred HhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc----eecCCCCCCCccCceeCCCCCEEEEEEC--CcEEE
Q 004067 122 ERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE----LKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHV 194 (776)
Q Consensus 122 ~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~----~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~ 194 (776)
.++..+..+.||. ||+.|+.. .++.|.+|++..-+.+ .+.+ -+......+.|+||-+.+++... +.|++
T Consensus 84 gH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 84 GHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred ccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4456789999999 99999976 6788999988753322 0111 11123567899999998888653 45777
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccce--eccc--CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIA--QEEM--DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+-+.-.+. +... .. ...|.+ -++. ..+-.+-..-.++.|+..+.+
T Consensus 160 yk~~K~~d------G~~~--~~-~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------------------- 208 (420)
T KOG2096|consen 160 YKLVKKTD------GSGS--HH-FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------------------- 208 (420)
T ss_pred EEeeeccc------CCCC--cc-cccccccccchhcccceEEEeecCCceEEEEecCC----------------------
Confidence 75532111 1100 00 000000 0000 001112233344555444322
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC---C
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI---K 347 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~---~ 347 (776)
..|-+|++++..+..+++. +......+.||||++|+... -..++.+|.+ +
T Consensus 209 --------------t~i~lw~lkGq~L~~idtn---------q~~n~~aavSP~GRFia~~g----FTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 209 --------------TKICLWDLKGQLLQSIDTN---------QSSNYDAAVSPDGRFIAVSG----FTPDVKVWEPIFTK 261 (420)
T ss_pred --------------CcEEEEecCCceeeeeccc---------cccccceeeCCCCcEEEEec----CCCCceEEEEEecc
Confidence 4589999998777777553 33445688999999777654 2334445543 3
Q ss_pred CCceEEE---EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCC---CceeeccccC-------CeE
Q 004067 348 TGQRKVI---LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN---GTCLGPITEG-------DWM 414 (776)
Q Consensus 348 ~g~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~---g~~~~~lt~~-------~~~ 414 (776)
.|+.+.+ .+-.+..-......|++ +..-+.+..++|...||-.|.. +..+..|-.+ ...
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn--------~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSN--------SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCC--------CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 4544322 22111100011112333 2234556668886665554432 2223333222 112
Q ss_pred EEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEee
Q 004067 415 VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD 484 (776)
Q Consensus 415 ~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~ 484 (776)
... +..+|.|+.++.....+ +++|... +|+ .......+- +..+..++|++||++++..-.
T Consensus 334 p~R-L~lsP~g~~lA~s~gs~----l~~~~se---~g~-~~~~~e~~h-~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 334 PVR-LELSPSGDSLAVSFGSD----LKVFASE---DGK-DYPELEDIH-STTISSISYSSDGKYIATCGD 393 (420)
T ss_pred ceE-EEeCCCCcEEEeecCCc----eEEEEcc---cCc-cchhHHHhh-cCceeeEEecCCCcEEeeecc
Confidence 223 34899999776665432 5666655 343 001222222 224667899999999886643
No 233
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.78 E-value=1.9e-06 Score=85.85 Aligned_cols=233 Identities=12% Similarity=0.113 Sum_probs=138.4
Q ss_pred eEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeC-CCCCEEEEEECCcEEEEecCCCceeEE
Q 004067 129 RYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLS-SDGTMIAFVRDCELHVLNLLINEQRQL 205 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~S-pDg~~la~~~~~~l~~~~l~~g~~~~l 205 (776)
.+.|.+ ....|++. ..+.|+.++..+++.. .+.... .....+. +| ..+++.....+.++++++++.+.+
T Consensus 4 gp~~d~---~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~---~~G~~~~~~~-g~l~v~~~~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDP---RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG---PNGMAFDRPD-GRLYVADSGGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEET---TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS---EEEEEEECTT-SEEEEEETTCEEEEETTTTEEEEE
T ss_pred ceEEEC---CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC---CceEEEEccC-CEEEEEEcCceEEEecCCCcEEEE
Confidence 467887 77788877 5788999999998876 443322 3445666 56 566777777888889999988877
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
....... ....+.+.+++.|||+ |++.......... ....
T Consensus 76 ~~~~~~~------------~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~---------------------------~~~g 115 (246)
T PF08450_consen 76 ADLPDGG------------VPFNRPNDVAVDPDGN-LYVTDSGGGGASG---------------------------IDPG 115 (246)
T ss_dssp EEEETTC------------SCTEEEEEEEE-TTS--EEEEEECCBCTTC---------------------------GGSE
T ss_pred eeccCCC------------cccCCCceEEEcCCCC-EEEEecCCCcccc---------------------------cccc
Confidence 6542110 0011244788999998 6665532211000 0005
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC--Cce--EEEEEeccCc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQR--KVILVEELDS 361 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~--g~~--~~l~~~~~~~ 361 (776)
.|+.++.+ ++...+.. .......++|||||+.|++.... ...|++++++. +.. +.+..+....
T Consensus 116 ~v~~~~~~-~~~~~~~~---------~~~~pNGi~~s~dg~~lyv~ds~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 182 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVAD---------GLGFPNGIAFSPDGKTLYVADSF---NGRIWRFDLDADGGELSNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEETT-SEEEEEEE---------EESSEEEEEEETTSSEEEEEETT---TTEEEEEEEETTTCCEEEEEEEEE-SSS
T ss_pred ceEEECCC-CeEEEEec---------CcccccceEECCcchheeecccc---cceeEEEeccccccceeeeeeEEEcCCC
Confidence 68999998 66655522 23345679999999977765432 33488888853 322 2222211110
Q ss_pred eeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeCCCceeeccccCCeEEEEEEee-cCCCcEEEEEEc
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITEGDWMVEQIVGV-NEASGQVYFTGT 433 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~-s~dg~~i~~~~~ 433 (776)
. ..+.++..|.++-+|++.. .+ .|++++++|.....+........+.. | .++.+.||+++.
T Consensus 183 ~--------g~pDG~~vD~~G~l~va~~~~~--~I~~~~p~G~~~~~i~~p~~~~t~~~-fgg~~~~~L~vTta 245 (246)
T PF08450_consen 183 P--------GYPDGLAVDSDGNLWVADWGGG--RIVVFDPDGKLLREIELPVPRPTNCA-FGGPDGKTLYVTTA 245 (246)
T ss_dssp S--------CEEEEEEEBTTS-EEEEEETTT--EEEEEETTSCEEEEEE-SSSSEEEEE-EESTTSSEEEEEEB
T ss_pred C--------cCCCcceEcCCCCEEEEEcCCC--EEEEECCCccEEEEEcCCCCCEEEEE-EECCCCCEEEEEeC
Confidence 0 0122334455555555543 34 89999999776776666533445544 6 577788888764
No 234
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.77 E-value=9.2e-08 Score=95.01 Aligned_cols=222 Identities=20% Similarity=0.269 Sum_probs=131.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhh-h------
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA-S------ 609 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~-~------ 609 (776)
-+..++.|+.. ..+..|++|.+.|.+.... | .+...++..|.+.|+..+.+..+=+|..-..... .
T Consensus 77 a~~~~~~P~~~--~~~~rp~~IhLagTGDh~f----~-rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~Vs 149 (348)
T PF09752_consen 77 ARFQLLLPKRW--DSPYRPVCIHLAGTGDHGF----W-RRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVS 149 (348)
T ss_pred eEEEEEECCcc--ccCCCceEEEecCCCccch----h-hhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchh
Confidence 44555566653 1246789999999654322 2 2334447778888999999998766543211100 0
Q ss_pred hhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC--------------Cc
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT--------------SW 675 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~--------------~~ 675 (776)
-...++...+.+....+.|+.++++ .+++|.|.||||.+|.++++..|..+..+-.+++.. +|
T Consensus 150 Dl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W 226 (348)
T PF09752_consen 150 DLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINW 226 (348)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCH
Confidence 0112233457788888999998853 599999999999999999999988765554444332 23
Q ss_pred ccccccc-----cccccCCCCC--------------Cccc----hhcCChhhhhccCC-----CcEEEEecCCCCccChH
Q 004067 676 DGYDTFY-----TEKYMGLPSE--------------DPVG----YEYSSVMHHVHKMK-----GKLLLVHGMIDENVHFR 727 (776)
Q Consensus 676 ~~~~~~~-----~~~~~~~~~~--------------~~~~----~~~~~~~~~~~~i~-----~P~lii~G~~D~~v~~~ 727 (776)
......+ .+.....+.. ..+. .....-..++.++. ..+.++.+++|..||..
T Consensus 227 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~ 306 (348)
T PF09752_consen 227 DALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRH 306 (348)
T ss_pred HHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechh
Confidence 2221111 1100000000 0000 00001112233333 35788999999999988
Q ss_pred HHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 728 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 728 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
....+.+.. ..+++..+++ ||.-...-....+.+.|.+-|+
T Consensus 307 ~v~~Lq~~W----PGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 307 GVLSLQEIW----PGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hcchHHHhC----CCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 777665554 6678888887 9976555555666666666554
No 235
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.77 E-value=1.8e-08 Score=111.73 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=87.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CC-cEEEEECCC-CCCCCchhhhhhhhhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KG-ILVWKLDNR-GTARRGLKFEASIKHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G-~~v~~~d~r-g~g~~~~~~~~~~~~~ 613 (776)
++..+|.|... ...+++|+||++|||+........+ ....++. .+ ++|+.++|| |..++...... ..
T Consensus 79 l~l~i~~p~~~-~~~~~~pv~v~ihGG~~~~g~~~~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~ 148 (493)
T cd00312 79 LYLNVYTPKNT-KPGNSLPVMVWIHGGGFMFGSGSLY------PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---EL 148 (493)
T ss_pred CeEEEEeCCCC-CCCCCCCEEEEEcCCccccCCCCCC------ChHHHHhcCCCEEEEEecccccccccccCCCC---CC
Confidence 78888888753 1225789999999986543211111 1234443 44 999999999 55443321111 11
Q ss_pred cCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~ 674 (776)
.+...+.|+..+++|+.++ ...|+++|.|+|+|.||++++.++.. .+.+|+++|+.++...
T Consensus 149 ~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 149 PGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 2233478999999999875 35799999999999999999998876 2457888888877543
No 236
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.76 E-value=7.8e-06 Score=86.67 Aligned_cols=328 Identities=12% Similarity=0.044 Sum_probs=189.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++++.+++|+..+.+++.++ -+++||...-+..++... -.++.+..+-+.+
T Consensus 195 vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~------------------------ye~~E~vv~l~~~ 245 (775)
T KOG0319|consen 195 VTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPL------------------------YESLESVVRLREE 245 (775)
T ss_pred eeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheech------------------------hhheeeEEEechh
Confidence 48999999999998877643 689999854433211110 0134444555511
Q ss_pred CC--ceEEEEe-CCCcEEEEeCCCCcccee--cCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee-EEeeCCC
Q 004067 137 SK--KKIIMVP-LPDGIYFQDLSCSKPELK--LSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR-QLTHGAN 210 (776)
Q Consensus 137 ~d--g~~l~~~-~~~~l~~~d~~~~~~~~~--l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~-~lt~~~~ 210 (776)
-+ |.+++.. ..+.+..||.++++.... -.+.+. -.......-+++.++.+.+.+|++++.++.+.. ++.-..
T Consensus 246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e-~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n- 323 (775)
T KOG0319|consen 246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE-IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN- 323 (775)
T ss_pred cCCcceEEEEecCCceEEEEecccchhhhhhccCCchh-hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc-
Confidence 12 3344433 556788999999876511 111222 133345566888888888899999988877653 332211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
+.+++ --.|.|+.+.|+.++.. ..+.+|
T Consensus 324 ---------dEI~D-------m~~lG~e~~~laVATNs------------------------------------~~lr~y 351 (775)
T KOG0319|consen 324 ---------DEILD-------MKFLGPEESHLAVATNS------------------------------------PELRLY 351 (775)
T ss_pred ---------hhhee-------eeecCCccceEEEEeCC------------------------------------CceEEE
Confidence 11111 12378888988887632 346777
Q ss_pred EcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE-----EEeccCceeec
Q 004067 291 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI-----LVEELDSWVNL 365 (776)
Q Consensus 291 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l-----~~~~~~~~~~~ 365 (776)
+..+-....+ .+|...+..+.-+.+|-+|+..+ ++..+.+|-++.+..+.+ +.+....-. .
T Consensus 352 ~~~~~~c~ii---------~GH~e~vlSL~~~~~g~llat~s----KD~svilWr~~~~~~~~~~~a~~~gH~~svga-v 417 (775)
T KOG0319|consen 352 TLPTSYCQII---------PGHTEAVLSLDVWSSGDLLATGS----KDKSVILWRLNNNCSKSLCVAQANGHTNSVGA-V 417 (775)
T ss_pred ecCCCceEEE---------eCchhheeeeeecccCcEEEEec----CCceEEEEEecCCcchhhhhhhhcccccccce-e
Confidence 8888777755 66777777777556674444333 333444454444333222 112111000 0
Q ss_pred ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee----cc----c--cCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 366 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG----PI----T--EGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~----~l----t--~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.+ +..+-.++.+...+. .|.+|++...+.. .+ + .++-++..+. .+|+.+ |+.+++.+
T Consensus 418 --a~-------~~~~asffvsvS~D~--tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va-ia~ndk-LiAT~SqD 484 (775)
T KOG0319|consen 418 --AG-------SKLGASFFVSVSQDC--TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA-IAPNDK-LIATGSQD 484 (775)
T ss_pred --ee-------cccCccEEEEecCCc--eEEEecCCCcccccccceehhhHHHHhhcccccceE-ecCCCc-eEEecccc
Confidence 00 111112444444455 7888887653221 11 1 1344555554 889877 66676666
Q ss_pred CCceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 436 GPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 436 ~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
.. .+||.+.- +. -.-.|..+. |+..++|||..+ ++.++|++.+ |.+|..++.+.++++.
T Consensus 485 kt--aKiW~le~---~~----l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~T---vKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 485 KT--AKIWDLEQ---LR----LLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKT---VKIWSISTFSCLKTFE 544 (775)
T ss_pred cc--eeeecccC---ce----EEEEeeCCccceEEEEeccccc-eeEeccCCce---EEEEEeccceeeeeec
Confidence 54 78999872 21 344555554 789999999986 4455555553 7888888998888775
No 237
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.75 E-value=2.4e-06 Score=90.40 Aligned_cols=328 Identities=11% Similarity=0.077 Sum_probs=188.5
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
.++||++|+.|+-.-. ..|-..|.+++... +.. ++++. ..-+.++..+| |
T Consensus 24 ~~~~s~nG~~L~t~~~------d~Vi~idv~t~~~~-l~s----------~~~ed----------~d~ita~~l~~---d 73 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACG------DRVIIIDVATGSIA-LPS----------GSNED----------EDEITALALTP---D 73 (775)
T ss_pred ceeECCCCCEEEEecC------ceEEEEEccCCcee-ccc----------CCccc----------hhhhheeeecC---C
Confidence 3899999999985433 34888999988763 221 11111 13467889999 9
Q ss_pred ceEEEEeCCCc-EEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCceec
Q 004067 139 KKIIMVPLPDG-IYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 139 g~~l~~~~~~~-l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
++.|+....+. |-+|++.+++..+........++...+|+|-|..++-.. ++.+-+||.+.+..+--. .+.+
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~g----- 147 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHG----- 147 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCC-----
Confidence 99999885554 678999999877333332334578899999996555543 467999999987654221 2211
Q ss_pred CCcccceecccCCcceEEECCCCCe-EEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKF-IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
+.+.++.|.|+-++ |++.... ...+++||+.++
T Consensus 148 -----------GvVssl~F~~~~~~~lL~sg~~-----------------------------------D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 148 -----------GVVSSLLFHPHWNRWLLASGAT-----------------------------------DGTVRVWNLNDK 181 (775)
T ss_pred -----------ceEEEEEeCCccchhheeecCC-----------------------------------CceEEEEEcccC
Confidence 11446778888664 3333221 156899999876
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG 375 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 375 (776)
.. .+.. ...+...+..+.+++|+..++... .+..+++||+.+-+...+...... ++. ..+.+...+
T Consensus 182 ~t-cl~~------~~~H~S~vtsL~~~~d~~~~ls~~----RDkvi~vwd~~~~~~l~~lp~ye~--~E~-vv~l~~~~~ 247 (775)
T KOG0319|consen 182 RT-CLHT------MILHKSAVTSLAFSEDSLELLSVG----RDKVIIVWDLVQYKKLKTLPLYES--LES-VVRLREELG 247 (775)
T ss_pred ch-HHHH------HHhhhhheeeeeeccCCceEEEec----cCcEEEEeehhhhhhhheechhhh--eee-EEEechhcC
Confidence 65 1111 034666788999999998776664 455689999965443222221111 000 001111100
Q ss_pred ccccCCeEEEEeccCCceEEEEEeCCCceeeccccCC--eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCC
Q 004067 376 VTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD--WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH 453 (776)
Q Consensus 376 ~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~--~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~ 453 (776)
- .+.++++...+| .+..|+.++++........ ............++.+.+++ +. +.-|| +.+ ...
T Consensus 248 --~-~~~~~~TaG~~g--~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta-eQ---nl~l~--d~~-~l~- 314 (775)
T KOG0319|consen 248 --G-KGEYIITAGGSG--VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA-EQ---NLFLY--DED-ELT- 314 (775)
T ss_pred --C-cceEEEEecCCc--eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc-cc---eEEEE--Ecc-ccE-
Confidence 0 023555555556 8888998887633222111 11222332344455444443 21 23444 431 111
Q ss_pred ccccceeecCC-CCeEEE-EEcCCcCEEEEEeeCCCCCCEEEEEEcCCCce
Q 004067 454 TLEAPVKLTNG-KGKHVA-VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 502 (776)
Q Consensus 454 ~~~~~~~l~~~-~~~~~~-~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~ 502 (776)
..+++-.. +-+.+. -+-|+.++|+....+ |++.+++.++-..
T Consensus 315 ---i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs----~~lr~y~~~~~~c 358 (775)
T KOG0319|consen 315 ---IVKQIVGYNDEILDMKFLGPEESHLAVATNS----PELRLYTLPTSYC 358 (775)
T ss_pred ---EehhhcCCchhheeeeecCCccceEEEEeCC----CceEEEecCCCce
Confidence 22223221 223444 667888888888766 5688888766654
No 238
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.75 E-value=3.8e-05 Score=76.39 Aligned_cols=283 Identities=14% Similarity=0.143 Sum_probs=155.3
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEEecCCCceeEEeeCCCCCceec
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVLNLLINEQRQLTHGANGNTVTH 216 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~~l~~g~~~~lt~~~~~~~~~~ 216 (776)
+.+|++|.+.++..-.+..+ ...++..||||+.++.... .-|-+||.+|=..+.-..-+...+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g---~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG---FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE---SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc---cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 57999999988876344332 3556889999998876542 127788888765433211111101111
Q ss_pred CCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc
Q 004067 217 GLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP 296 (776)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 296 (776)
... ...+..|+|||++++.... +...+-|+|++.++
T Consensus 94 ~~~----------~~~~~ls~dgk~~~V~N~T----------------------------------Pa~SVtVVDl~~~k 129 (342)
T PF06433_consen 94 VPY----------KNMFALSADGKFLYVQNFT----------------------------------PATSVTVVDLAAKK 129 (342)
T ss_dssp S------------GGGEEE-TTSSEEEEEEES----------------------------------SSEEEEEEETTTTE
T ss_pred ccc----------ccceEEccCCcEEEEEccC----------------------------------CCCeEEEEECCCCc
Confidence 111 2356799999998876542 22678999999998
Q ss_pred eEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee-cccccccCCC
Q 004067 297 VSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN-LHDCFTPLDK 374 (776)
Q Consensus 297 ~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~ 374 (776)
... ++ .++...++. +++..+. ..+ .+ +...-+.+|.+ |+..+.... .+.. .++.|.-..
T Consensus 130 vv~ei~--------~PGC~~iyP---~~~~~F~-~lC-~D-Gsl~~v~Ld~~-Gk~~~~~t~---~F~~~~dp~f~~~~- 190 (342)
T PF06433_consen 130 VVGEID--------TPGCWLIYP---SGNRGFS-MLC-GD-GSLLTVTLDAD-GKEAQKSTK---VFDPDDDPLFEHPA- 190 (342)
T ss_dssp EEEEEE--------GTSEEEEEE---EETTEEE-EEE-TT-SCEEEEEETST-SSEEEEEEE---ESSTTTS-B-S--E-
T ss_pred eeeeec--------CCCEEEEEe---cCCCceE-EEe-cC-CceEEEEECCC-CCEeEeecc---ccCCCCcccccccc-
Confidence 754 33 344555443 3333322 222 22 23333444444 444322211 1111 122221110
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCceeec------ccc----CCeEEE--EEEeecCCCcEEEEEEccCC-----C
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP------ITE----GDWMVE--QIVGVNEASGQVYFTGTLDG-----P 437 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~------lt~----~~~~~~--~~~~~s~dg~~i~~~~~~~~-----~ 437 (776)
....++.++|.+ -.| .+|..++.+...+. ++. ..|... ++.++++..++||+...... .
T Consensus 191 -~~~~~~~~~F~S-y~G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 191 -YSRDGGRLYFVS-YEG--NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp -EETTTTEEEEEB-TTS--EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred -eECCCCeEEEEe-cCC--EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 123355678766 456 89999988775322 221 244433 34567777888888764311 1
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
.-.+||.+++.+ + ..+.++.-...+.++.+|-|.+=++|..+..+ ..|+++|..+|+.++.+.
T Consensus 267 pgteVWv~D~~t-~----krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 267 PGTEVWVYDLKT-H----KRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -EEEEEEEETTT-T----EEEEEEEEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT--EEEEE-
T ss_pred CceEEEEEECCC-C----eEEEEEeCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCCcEEeehh
Confidence 236899999852 3 25666664433447899999998998876544 479999999998776653
No 239
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=4.7e-06 Score=90.54 Aligned_cols=267 Identities=16% Similarity=0.144 Sum_probs=159.3
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC--ceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC--KQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.+.|-|||+.|..... + +.|..|+...- +++.+-. .+.......-
T Consensus 17 t~i~~d~~gefi~tcgs-d----g~ir~~~~~sd~e~P~ti~~--------------------------~g~~v~~ia~- 64 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGS-D----GDIRKWKTNSDEEEPETIDI--------------------------SGELVSSIAC- 64 (933)
T ss_pred EEEEEcCCCCEEEEecC-C----CceEEeecCCcccCCchhhc--------------------------cCceeEEEee-
Confidence 88999999997765443 2 34777765433 2222210 1333344444
Q ss_pred CCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
++.+++. +.++.|.++....++....|+...- ++....++-+|+++|+.++. .|-++++.++...........
T Consensus 65 --~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-- 139 (933)
T KOG1274|consen 65 --YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-- 139 (933)
T ss_pred --cccceEEeeccceEEEeeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--
Confidence 4555554 4778898998887776623333322 47889999999999999875 588888887665544433221
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+..+.++|.|+.||..+.+ ..|++||+.
T Consensus 140 ---------------pVl~l~~~p~~~fLAvss~d------------------------------------G~v~iw~~~ 168 (933)
T KOG1274|consen 140 ---------------PVLQLSYDPKGNFLAVSSCD------------------------------------GKVQIWDLQ 168 (933)
T ss_pred ---------------ceeeeeEcCCCCEEEEEecC------------------------------------ceEEEEEcc
Confidence 15578899999999987754 458999999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe--ccCceeeccccccc
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE--ELDSWVNLHDCFTP 371 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~ 371 (776)
++.....-......-.......+..++|+|+|..+++.. .+..+.+|+.++.+..-.... ....+...
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~----~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~------ 238 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP----VDNTVKVYSRKGWELQFKLRDKLSSSKFSDL------ 238 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeec----cCCeEEEEccCCceeheeecccccccceEEE------
Confidence 887543211100000111234567899999966555554 355688999888776433222 22222211
Q ss_pred CCCCccccCCe-EEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 372 LDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 372 ~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
+|++.+ ++.++.-+| .|.+||.++-+. -.....|... .|-|+...|-+...
T Consensus 239 -----~wsPnG~YiAAs~~~g--~I~vWnv~t~~~---~~~~~~Vc~~-aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 239 -----QWSPNGKYIAASTLDG--QILVWNVDTHER---HEFKRAVCCE-AWKPNANAITLITA 290 (933)
T ss_pred -----EEcCCCcEEeeeccCC--cEEEEecccchh---ccccceeEEE-ecCCCCCeeEEEee
Confidence 333433 555666677 899999876221 1112233333 36666655555543
No 240
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.74 E-value=1.3e-05 Score=85.05 Aligned_cols=284 Identities=15% Similarity=0.064 Sum_probs=170.0
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
.+.++.+|. |...++...++.|.+|+.++.+..++++.+ .+....|-|-+++|+.... +.|-++++++.....
T Consensus 375 dVRsl~vS~---d~~~~~Sga~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 375 DVRSLCVSS---DSILLASGAGESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred heeEEEeec---CceeeeecCCCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 578899998 888888888899999999988776466543 4677899999998888764 679999998875433
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
......+ .+..++-+||++..+..+.|.. +.-|.+.
T Consensus 449 ti~AHdg-----------------aIWsi~~~pD~~g~vT~saDkt-VkfWdf~-------------------------- 484 (888)
T KOG0306|consen 449 TIRAHDG-----------------AIWSISLSPDNKGFVTGSADKT-VKFWDFK-------------------------- 484 (888)
T ss_pred hhhcccc-----------------ceeeeeecCCCCceEEecCCcE-EEEEeEE--------------------------
Confidence 3221111 1335778999999888775432 1111111
Q ss_pred EEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCce
Q 004067 285 VRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSW 362 (776)
Q Consensus 285 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~ 362 (776)
.+.+ ..|. .+.+.+. +.+...-...+..+++||||++++...- +.++.+|-+++=+. -.++.|.-+.-
T Consensus 485 ---l~~~-~~gt~~k~lsl~--~~rtLel~ddvL~v~~Spdgk~LaVsLL----dnTVkVyflDtlKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 485 ---LVVS-VPGTQKKVLSLK--HTRTLELEDDVLCVSVSPDGKLLAVSLL----DNTVKVYFLDTLKFFLSLYGHKLPVL 554 (888)
T ss_pred ---EEec-cCcccceeeeec--cceEEeccccEEEEEEcCCCcEEEEEec----cCeEEEEEecceeeeeeeccccccee
Confidence 0111 1111 1112111 0000122345778999999998877652 22344444444333 34555554432
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
..+ .+| ++..+.+...+. ++.+|.++=|. .+.+-.++..+..+. |=|+ .+++|+.+.++ .
T Consensus 555 smD---IS~--------DSklivTgSADK--nVKiWGLdFGDCHKS~fAHdDSvm~V~-F~P~-~~~FFt~gKD~----k 615 (888)
T KOG0306|consen 555 SMD---ISP--------DSKLIVTGSADK--NVKIWGLDFGDCHKSFFAHDDSVMSVQ-FLPK-THLFFTCGKDG----K 615 (888)
T ss_pred EEe---ccC--------CcCeEEeccCCC--ceEEeccccchhhhhhhcccCceeEEE-Eccc-ceeEEEecCcc----e
Confidence 221 223 344666655555 88899888665 455666676766665 7674 66888887764 3
Q ss_pred EEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 442 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 442 l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+-..+. .. -..++.|..+.. ++-.+.+|+|.+++-.++ +. .|..|..
T Consensus 616 vKqWDg----~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~sh--D~--sIRlwE~ 663 (888)
T KOG0306|consen 616 VKQWDG----EK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH--DK--SIRLWER 663 (888)
T ss_pred EEeech----hh-hhhheeeccchheeeeeEEcCCCCeEEeccC--Cc--eeEeeec
Confidence 333332 10 024666665543 566799999987665433 22 4666665
No 241
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.73 E-value=5.3e-08 Score=101.94 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHH--hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR--SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~--~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..|++|++||...... ...|.. .++..|. ...|.|+++|++|+|.+......... ....+++.+.+++|.
T Consensus 40 ~~ptvIlIHG~~~s~~-~~~w~~---~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t----~~vg~~la~lI~~L~ 111 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGM-FESWVP---KLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYT----KLVGKDVAKFVNWMQ 111 (442)
T ss_pred CCCeEEEECCCCcCCc-chhhHH---HHHHHHHhccCCCEEEEEECCCcCCCCCccccccH----HHHHHHHHHHHHHHH
Confidence 3488999999765321 122321 1233333 23699999999998865422110000 112356777788776
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
+...++.+++.|+||||||++|..++...|.++..++++.|..
T Consensus 112 ~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 112 EEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred HhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 6544577899999999999999999998899999999988764
No 242
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.73 E-value=5e-05 Score=81.89 Aligned_cols=343 Identities=10% Similarity=0.001 Sum_probs=185.4
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCC
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCS 158 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~ 158 (776)
++|.+.|+..++.-.-+.++. ..+.+.+|.- ||.-+... ..|++.+||++..
T Consensus 224 G~ViifNlK~dkil~sFk~d~-----------------------g~VtslSFrt---DG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDW-----------------------GRVTSLSFRT---DGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred ceEEEEEcccCcEEEEEEccc-----------------------cceeEEEecc---CCCeeEEeccCCceEEEEEcCCC
Confidence 568888888777544443321 3688999999 99998876 4578999999998
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEEC--C--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEE
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--C--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYW 234 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (776)
+....+.....+.+....|-|.-. +++++. + .+|+.|.-+|..|+|-...+...-.. -++
T Consensus 278 kl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~---------------~ir 341 (910)
T KOG1539|consen 278 KLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS---------------CIR 341 (910)
T ss_pred eeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch---------------hee
Confidence 877222212222355666666554 444432 2 48888977888888876443321111 122
Q ss_pred E-CCCCCeEEEEEecCCC----------CCeEEE--eecC--------CCCCCCCCcceecCCCC--CCC-------CCe
Q 004067 235 W-SLDSKFIAFTQVDSSE----------IPRFRI--MHQG--------KSSVGSEAQEDHAYPFA--GAS-------NVK 284 (776)
Q Consensus 235 w-spDg~~l~~~~~~~~~----------~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~--g~~-------~~~ 284 (776)
| --.|..|.-.+.|++- ....-. .... ......+......+..+ .++ .+.
T Consensus 342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence 2 2445555554444320 000000 0000 00000111111111111 111 123
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE----eccC
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV----EELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~~~ 360 (776)
.+++.|+...+..=...+. +.++.+.+..+..++.|+-|...+...+ .+.|-+|++.+|-.+--+. +..+
T Consensus 422 ~~~~tW~~~n~~~G~~~L~--~~~~~~~~~~~~av~vs~CGNF~~IG~S----~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLD--PKRFKKDDINATAVCVSFCGNFVFIGYS----KGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred ceEEEEeccCcccccEEec--CccccccCcceEEEEEeccCceEEEecc----CCeEEEEEcccCeeecccccCccccCc
Confidence 5688888876554222221 1122335667888999999997776653 4468888888876554331 1111
Q ss_pred ceeecccccccCCCCccccC-CeEEEEeccCC---------------------------------------ceEEEEEeC
Q 004067 361 SWVNLHDCFTPLDKGVTKYS-GGFIWASEKTG---------------------------------------FRHLYLHDI 400 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g---------------------------------------~~~l~~~~~ 400 (776)
- .+++-|+ ++.+.++..+| .-.|.++|.
T Consensus 496 -V-----------~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 496 -V-----------TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred -e-----------eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 0 0001111 01111111122 235666665
Q ss_pred CCcee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEE
Q 004067 401 NGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNF 479 (776)
Q Consensus 401 ~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l 479 (776)
.+.+. +.+-.+...+..+. ||+||++|+..+.+. . +.+|++.. |. .+-.+--.....+++|||+|.+|
T Consensus 564 ~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~-t--Ir~wDlpt---~~----lID~~~vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 564 VTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDS-T--IRTWDLPT---GT----LIDGLLVDSPCTSLSFSPNGDFL 632 (910)
T ss_pred hhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCC-c--EEEEeccC---cc----eeeeEecCCcceeeEECCCCCEE
Confidence 55443 34444555666665 999999877776643 2 78888875 32 23233223334578999999999
Q ss_pred EEEeeCCCCCCEEEEEEc
Q 004067 480 VDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 480 ~~~~~~~~~~~~i~~~~~ 497 (776)
|.++.... .||+|..
T Consensus 633 AT~Hvd~~---gIylWsN 647 (910)
T KOG1539|consen 633 ATVHVDQN---GIYLWSN 647 (910)
T ss_pred EEEEecCc---eEEEEEc
Confidence 99987755 3787764
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.5e-05 Score=80.52 Aligned_cols=314 Identities=12% Similarity=0.085 Sum_probs=177.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+...+|++|+..||.... .+++.+...++ ..++.. .......-|||
T Consensus 38 ~v~~~S~~G~lfA~~~~~------~v~i~~~~~~~-~~lt~~------------------------~~~~~~L~fSP--- 83 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ------VVKVFEIATLK-VVLCVE------------------------LKKTYDLLFSP--- 83 (566)
T ss_pred eeEEEcCCCcEEEEEcCC------eEEEEEccCCc-EEEEec------------------------cceeeeeeecc---
Confidence 567899999999998653 48888888775 333321 12466778899
Q ss_pred CceEEEEe-----------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc--eeE
Q 004067 138 KKKIIMVP-----------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE--QRQ 204 (776)
Q Consensus 138 dg~~l~~~-----------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~--~~~ 204 (776)
-|.+|..- ..-.+.+|+++++..+..+..... ....++||+|....|.+..++++.+++.+-. ...
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q-~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k 162 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ-NGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK 162 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhh-cCcccccccchhhhhhhhcceEEEEecCCccceeee
Confidence 88887753 223477888888554422211111 1358999999999999999999999887622 222
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCC--eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK--FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
|... ++..+..||-+. .||+-.-... ...
T Consensus 163 l~~~--------------------~i~~f~lSpgp~~~~vAvyvPe~k-----------------------------GaP 193 (566)
T KOG2315|consen 163 LSVS--------------------GITMLSLSPGPEPPFVAVYVPEKK-----------------------------GAP 193 (566)
T ss_pred eecc--------------------ceeeEEecCCCCCceEEEEccCCC-----------------------------CCC
Confidence 3211 144677887543 4443221111 111
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecC-------ceEEEEEEECCCCceEEE
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQ-------TKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~-------~~~~l~~~d~~~g~~~~l 354 (776)
....||-+. ..+....+... .++. ..-....|.+-|. .|+.++..-. +...||+++.+ |+...+
T Consensus 194 a~vri~~~~-~~~~~~~~a~k----sFFk--adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V 265 (566)
T KOG2315|consen 194 ASVRIYKYP-EEGQHQPVANK----SFFK--ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSV 265 (566)
T ss_pred cEEEEeccc-cccccchhhhc----cccc--cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEE
Confidence 223333333 11211111100 0011 1223467888887 4444433211 24689999988 333333
Q ss_pred -EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 355 -LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
....++.... .|+| ++..|..+- .--...+-++|+.+....-+.++.. +-.-|+|.|..|++.+-
T Consensus 266 ~L~k~GPVhdv---~W~~-------s~~EF~Vvy-GfMPAkvtifnlr~~~v~df~egpR---N~~~fnp~g~ii~lAGF 331 (566)
T KOG2315|consen 266 PLLKEGPVHDV---TWSP-------SGREFAVVY-GFMPAKVTIFNLRGKPVFDFPEGPR---NTAFFNPHGNIILLAGF 331 (566)
T ss_pred ecCCCCCceEE---EECC-------CCCEEEEEE-ecccceEEEEcCCCCEeEeCCCCCc---cceEECCCCCEEEEeec
Confidence 2223332211 1222 122243322 1112467788888877666665542 23349999999888887
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
.+-++..++|++.-. ..+..+... ...-..|+|||++|+....+
T Consensus 332 GNL~G~mEvwDv~n~-------K~i~~~~a~-~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNR-------KLIAKFKAA-NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CCCCCceEEEeccch-------hhccccccC-CceEEEEcCCCcEEEEEecc
Confidence 776777899988731 122233222 23345999999999887655
No 244
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.71 E-value=1.1e-06 Score=88.46 Aligned_cols=267 Identities=10% Similarity=0.015 Sum_probs=172.2
Q ss_pred hcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCC----CCCCCccCceeCCCCCEEEEEEC-CcEEEEec
Q 004067 123 RGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSS----SSCSPVIDPHLSSDGTMIAFVRD-CELHVLNL 197 (776)
Q Consensus 123 ~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~----~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l 197 (776)
++.=+.+...|. ..++++....+.|.+||+.+...+.++.. .....++....+|||+.|+.-.. ..|-+|||
T Consensus 418 HGEvVcAvtIS~---~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 418 HGEVVCAVTISN---PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred cCcEEEEEEecC---CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 334456788887 88888888889999999987654412211 12234777899999999987765 46899999
Q ss_pred CCCcee---EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 198 LINEQR---QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 198 ~~g~~~---~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
+.-..+ +|+..... -.+++.|||.| ++|..-..
T Consensus 495 AapTprikaeltssapa------------------CyALa~spDak-vcFsccsd------------------------- 530 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPA------------------CYALAISPDAK-VCFSCCSD------------------------- 530 (705)
T ss_pred cCCCcchhhhcCCcchh------------------hhhhhcCCccc-eeeeeccC-------------------------
Confidence 876543 23322111 12677899998 77876433
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|.|||+......+- +.++......+..|+||..|.. +.-+..+.-||+..|..-+-
T Consensus 531 ----------GnI~vwDLhnq~~Vrq--------fqGhtDGascIdis~dGtklWT----GGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 531 ----------GNIAVWDLHNQTLVRQ--------FQGHTDGASCIDISKDGTKLWT----GGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred ----------CcEEEEEcccceeeec--------ccCCCCCceeEEecCCCceeec----CCCccceeehhhhhhhhhhh
Confidence 2378999877654332 2566677788999999986643 33567799999987653221
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
..-..-.++-. +.|. ++ ++.+.-+++ ++++....+.+..+|..++.-|.++- |++-|++++-+ ..
T Consensus 589 hdF~SQIfSLg---~cP~-------~d-WlavGMens--~vevlh~skp~kyqlhlheScVLSlK-Fa~cGkwfvSt-Gk 653 (705)
T KOG0639|consen 589 HDFSSQIFSLG---YCPT-------GD-WLAVGMENS--NVEVLHTSKPEKYQLHLHESCVLSLK-FAYCGKWFVST-GK 653 (705)
T ss_pred hhhhhhheecc---cCCC-------cc-ceeeecccC--cEEEEecCCccceeecccccEEEEEE-ecccCceeeec-Cc
Confidence 11111122111 2232 22 344444455 78888888888899998887777765 99999953333 33
Q ss_pred CCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEE
Q 004067 435 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDF 482 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~ 482 (776)
++. ...|+... |. .+-++.....+....+|-|.+++|..
T Consensus 654 Dnl--LnawrtPy---Ga----siFqskE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 654 DNL--LNAWRTPY---GA----SIFQSKESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred hhh--hhhccCcc---cc----ceeeccccCcceeeeeccCceEEEec
Confidence 333 67888885 32 44555544456677889999877655
No 245
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=9.9e-07 Score=95.59 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=123.9
Q ss_pred cceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEeC-CCcEEEEeCCCC
Q 004067 80 SRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLSCS 158 (776)
Q Consensus 80 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~~~ 158 (776)
...|-++....+++..+... ....+....++. +|+.+++.. +..|.++++..+
T Consensus 75 ~~tv~~y~fps~~~~~iL~R-----------------------ftlp~r~~~v~g---~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILAR-----------------------FTLPIRDLAVSG---SGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cceEEEeeCCCCCccceeee-----------------------eeccceEEEEec---CCcEEEeecCceeEEEEecccc
Confidence 35688888877776533321 013677888999 999999984 456889998877
Q ss_pred ccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCcee-EEeeCCCCCceecCCcccceecc-cCCcceEEE
Q 004067 159 KPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEE-MDRKTGYWW 235 (776)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w 235 (776)
..+ ....+..+.+..+.++|.|..||.++ ++.|++|+++++... .++.-... .+.+ -.....++|
T Consensus 129 s~~-~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-----------n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 129 SQE-KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-----------NEFILSRICTRLAW 196 (933)
T ss_pred chh-eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc-----------ccccccceeeeeee
Confidence 766 44444445689999999999999886 579999999988653 22221110 0111 112457899
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcc
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEE 314 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~ 314 (776)
+|||..+++...+ ..+.+|+.++.+..- +.. .....
T Consensus 197 ~Pk~g~la~~~~d------------------------------------~~Vkvy~r~~we~~f~Lr~-------~~~ss 233 (933)
T KOG1274|consen 197 HPKGGTLAVPPVD------------------------------------NTVKVYSRKGWELQFKLRD-------KLSSS 233 (933)
T ss_pred cCCCCeEEeeccC------------------------------------CeEEEEccCCceeheeecc-------ccccc
Confidence 9998888876643 346777777765432 211 11222
Q ss_pred eEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 315 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 315 ~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.+..+.|||.|++|+... -+..|.+||.++
T Consensus 234 ~~~~~~wsPnG~YiAAs~----~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAAST----LDGQILVWNVDT 263 (933)
T ss_pred ceEEEEEcCCCcEEeeec----cCCcEEEEeccc
Confidence 377899999999888765 456788999885
No 246
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=5.2e-06 Score=83.57 Aligned_cols=240 Identities=15% Similarity=0.134 Sum_probs=137.3
Q ss_pred eEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce-eEE
Q 004067 129 RYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ-RQL 205 (776)
Q Consensus 129 ~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~-~~l 205 (776)
.+.|.+ +...|++. ..+.|+.|+..+++.+ .+...... ...... |....+++....+++++++++.. +.+
T Consensus 29 gP~w~~---~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~-~~~~~~--d~~g~Lv~~~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 29 GPVWDP---DRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGF-SSGALI--DAGGRLIACEHGVRLLDPDTGGKITLL 101 (307)
T ss_pred CccCcC---CCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCc-ccceee--cCCCeEEEEccccEEEeccCCceeEEe
Confidence 467999 99988887 6788999999887776 44332211 122222 33345566666788888887777 555
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
+....+. .. -+.+.....|||. ++|..... .. .+ ........
T Consensus 102 ~~~~~~~-~~------------~r~ND~~v~pdG~-~wfgt~~~-----~~---~~----------------~~~~~~~G 143 (307)
T COG3386 102 AEPEDGL-PL------------NRPNDGVVDPDGR-IWFGDMGY-----FD---LG----------------KSEERPTG 143 (307)
T ss_pred ccccCCC-Cc------------CCCCceeEcCCCC-EEEeCCCc-----cc---cC----------------ccccCCcc
Confidence 4332211 11 1234566789887 66654321 00 00 00001113
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC--Cce---E-EEEEecc
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQR---K-VILVEEL 359 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~--g~~---~-~l~~~~~ 359 (776)
.||.+|..++..+.+ ...-..-..++|||||+.++++.. ....|++++.+. +.. + .+.....
T Consensus 144 ~lyr~~p~g~~~~l~---------~~~~~~~NGla~SpDg~tly~aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 144 SLYRVDPDGGVVRLL---------DDDLTIPNGLAFSPDGKTLYVADT---PANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred eEEEEcCCCCEEEee---------cCcEEecCceEECCCCCEEEEEeC---CCCeEEEEecCcccCccCCcceEEEccCC
Confidence 689999866555554 222333456999999997777643 234688887752 221 1 1111111
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
...+.++.-|.++.+|.+...+...|-+++++|.....+.-....+....--.++.+.||+++...
T Consensus 212 ----------~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 212 ----------PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ----------CCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 112233455566667755444446899999998777776655333444443467788899998764
No 247
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.69 E-value=1.9e-06 Score=82.28 Aligned_cols=215 Identities=15% Similarity=0.151 Sum_probs=122.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE---EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE---LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~---~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.+.+|||||.-|.-.+.... .++|-+..+..... .+.... ..+ -++ ..+.-+.++.|=+
T Consensus 53 kgckWSPDGSciL~~sedn~---l~~~nlP~dlys~~~~~~~~~~~-------~~~--~r~------~eg~tvydy~wYs 114 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNC---LNCWNLPFDLYSKKADGPLNFSK-------HLS--YRY------QEGETVYDYCWYS 114 (406)
T ss_pred ccceeCCCCceEEeecccCe---eeEEecChhhcccCCCCcccccc-------cee--EEe------ccCCEEEEEEeee
Confidence 57789999999987776543 34554444322110 000000 000 000 0123456777742
Q ss_pred ----cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCC----CCCccCceeCCCCCEEEEEECCcEEEEecC-CCceeE
Q 004067 135 ----TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSS----CSPVIDPHLSSDGTMIAFVRDCELHVLNLL-INEQRQ 204 (776)
Q Consensus 135 ----~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~la~~~~~~l~~~~l~-~g~~~~ 204 (776)
.-|+....+.+ ++.-|.+||.-+|+.+.-..... -.-+..+.|||||.+|.---.+-|.+++.. .|..-.
T Consensus 115 ~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 115 RMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc
Confidence 12255555554 56679999999999872111111 011567899999999988777889999883 453221
Q ss_pred E-eeCCCCCceecCCcccceecccCCcceEEECCC-CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 205 L-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD-SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 205 l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+ +.-..+ .+...+++.-+++||- .+.++..+..
T Consensus 195 vy~t~~~~-----------k~gq~giisc~a~sP~~~~~~a~gsY~---------------------------------- 229 (406)
T KOG2919|consen 195 VYTTVTKG-----------KFGQKGIISCFAFSPMDSKTLAVGSYG---------------------------------- 229 (406)
T ss_pred chhhhhcc-----------cccccceeeeeeccCCCCcceeeeccc----------------------------------
Confidence 1 110000 0111233556788984 5566665531
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..+-+|.-.++.+-.+ +.++.+.++.+.|-+||..++..+ +....|..||+..
T Consensus 230 --q~~giy~~~~~~pl~l--------lggh~gGvThL~~~edGn~lfsGa---Rk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 230 --QRVGIYNDDGRRPLQL--------LGGHGGGVTHLQWCEDGNKLFSGA---RKDDKILCWDIRY 282 (406)
T ss_pred --ceeeeEecCCCCceee--------ecccCCCeeeEEeccCcCeecccc---cCCCeEEEEeehh
Confidence 1234444444444333 256788999999999999776554 2455688999854
No 248
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=2.7e-06 Score=82.57 Aligned_cols=245 Identities=12% Similarity=0.097 Sum_probs=154.3
Q ss_pred CccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 171 PVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
.+....+.|+-..++..+ +..|+++|..+|+..+-..+... + +..++|+.-|+.|+-.+.|
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-----s------------v~di~~~a~Gk~l~tcSsD- 171 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD-----S------------VFDISFDASGKYLATCSSD- 171 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc-----c------------eeEEEEecCccEEEecCCc-
Confidence 366677888876555554 35699999999987432222111 1 4478899999988876543
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC--ceEEEEcccCCCCCCCCcceEEEEEeccCCeE
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG--PVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL 327 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~ 327 (776)
.++.+||.++- ..+.+ .++...+..+.|-|-|..
T Consensus 172 -----------------------------------l~~~LWd~~~~~~c~ks~---------~gh~h~vS~V~f~P~gd~ 207 (406)
T KOG0295|consen 172 -----------------------------------LSAKLWDFDTFFRCIKSL---------IGHEHGVSSVFFLPLGDH 207 (406)
T ss_pred -----------------------------------cchhheeHHHHHHHHHHh---------cCcccceeeEEEEecCCe
Confidence 33678887763 12222 567788999999999987
Q ss_pred EEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-
Q 004067 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG- 406 (776)
Q Consensus 328 l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~- 406 (776)
|+..+ .+..|..|+..+|-.......... |+.. +.+.. ++.++.+.+.+. +|-+|-..++...
T Consensus 208 ilS~s----rD~tik~We~~tg~cv~t~~~h~e-wvr~---v~v~~------DGti~As~s~dq--tl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 208 ILSCS----RDNTIKAWECDTGYCVKTFPGHSE-WVRM---VRVNQ------DGTIIASCSNDQ--TLRVWVVATKQCKA 271 (406)
T ss_pred eeecc----cccceeEEecccceeEEeccCchH-hEEE---EEecC------CeeEEEecCCCc--eEEEEEeccchhhh
Confidence 77665 566799999999986544433222 6543 33322 233444444454 8888887776433
Q ss_pred ccccCCeEEEEEEee--------------cCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCC-CCeEEEE
Q 004067 407 PITEGDWMVEQIVGV--------------NEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAV 471 (776)
Q Consensus 407 ~lt~~~~~~~~~~~~--------------s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~ 471 (776)
.+..++..+.-. .| +.+|..+.+..+.+.. +++|.+++ |. -+-.|-.+ ..+.+++
T Consensus 272 ~lR~hEh~vEci-~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt--Ik~wdv~t---g~----cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 272 ELREHEHPVECI-AWAPESSYPSISEATGSTNGGQVLGSGSRDKT--IKIWDVST---GM----CLFTLVGHDNWVRGVA 341 (406)
T ss_pred hhhccccceEEE-EecccccCcchhhccCCCCCccEEEeecccce--EEEEeccC---Ce----EEEEEecccceeeeeE
Confidence 334443333211 12 2334456677666655 88999986 32 23333333 3577899
Q ss_pred EcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 472 LDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 472 ~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
|+|-|++|+-.... ..|.+||.++++..+.+.
T Consensus 342 f~p~Gkyi~ScaDD----ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 342 FSPGGKYILSCADD----KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EcCCCeEEEEEecC----CcEEEEEeccceeeeccC
Confidence 99999999877654 248999998888766654
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.4e-05 Score=81.97 Aligned_cols=295 Identities=11% Similarity=0.102 Sum_probs=159.2
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCC------cCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDH------SLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGV 127 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~------~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (776)
...+..+.|||..++|+..+...- ....+|.+||+.+|...+-+...+ +++ .--
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~-----------~~~---------~~W 308 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK-----------SPY---------LKW 308 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-----------CCc---------ccc
Confidence 344578899999999997765221 134699999999998866553211 000 112
Q ss_pred eeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCCCc
Q 004067 128 TRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLINE 201 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~g~ 201 (776)
.-+.||. |++++|--..+.|.+++...-... ....-.-..+..+.|||-+..|||-... .+-++.+-+++
T Consensus 309 P~frWS~---DdKy~Arm~~~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 309 PIFRWSH---DDKYFARMTGNSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred ceEEecc---CCceeEEeccceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc
Confidence 3578999 999999776666666654432111 1111111137889999999999998742 35566666554
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..+-.. +-+++ .-.+.|-..|++|++-...-..... +..
T Consensus 385 ~iRt~n-------lfnVs----------DckLhWQk~gdyLcvkvdR~tK~~~------------------------~g~ 423 (698)
T KOG2314|consen 385 EIRTKN-------LFNVS----------DCKLHWQKSGDYLCVKVDRHTKSKV------------------------KGQ 423 (698)
T ss_pred eeeecc-------ceeee----------ccEEEeccCCcEEEEEEEeeccccc------------------------cce
Confidence 432211 01111 1156799999999986532211100 000
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEE-EEEeecCceEEEEEEECCCCceEEEEEeccC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTA-QVLNRSQTKLKVLKFDIKTGQRKVILVEELD 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 360 (776)
....+|+..+-+.=-+..+.+ ...+..++|-|.|...+ +..+........|....+.+.++.+..-...
T Consensus 424 f~n~eIfrireKdIpve~vel----------ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVVEL----------KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK 493 (698)
T ss_pred EeeEEEEEeeccCCCceeeec----------chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence 011333333322222222222 24567899999997444 4444444555677776656665544321110
Q ss_pred ceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
.. ..-.|+|- |+++... -.+-...|+.+|.+-...++....+....+-..|+|.|+++...++
T Consensus 494 ~~--N~vfwsPk--------G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 494 FA--NTVFWSPK--------GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cc--ceEEEcCC--------CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 00 00012331 2343332 2222238899987754444444333332333459999997665543
No 250
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.68 E-value=1.9e-06 Score=92.80 Aligned_cols=204 Identities=9% Similarity=0.061 Sum_probs=119.1
Q ss_pred cCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEE-CCcEEEEecCCCc
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVR-DCELHVLNLLINE 201 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~-~~~l~~~~l~~g~ 201 (776)
...|.+.+||. ++-.|-...|.++.+|++...+.- .+..+.. -+..++|.| |.++++--+ +..+.+|++...+
T Consensus 369 t~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL-~~F~Hnd-fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 369 TADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECL-KVFSHND-FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred chhheeccccc---CCeeEeccccccEEeecCCCccee-eEEecCC-eeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 34678999997 554444558889999999977765 4433333 488999999 666654443 4678899888776
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
+.-.+.-.. .+.++.|+|||+..+..+.++
T Consensus 444 Vv~W~Dl~~------------------lITAvcy~PdGk~avIGt~~G-------------------------------- 473 (712)
T KOG0283|consen 444 VVDWNDLRD------------------LITAVCYSPDGKGAVIGTFNG-------------------------------- 473 (712)
T ss_pred eEeehhhhh------------------hheeEEeccCCceEEEEEecc--------------------------------
Confidence 654443221 266899999999888777542
Q ss_pred CCeEEEEEEEcCCCceEE---EEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 282 NVKVRLGVVSAAGGPVSW---MDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..++|+..+-+... |....+. ......|+.+.|.|-.. .++.++ ++..|.+||.........+..
T Consensus 474 ----~C~fY~t~~lk~~~~~~I~~~~~K---k~~~~rITG~Q~~p~~~~~vLVTS----nDSrIRI~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 474 ----YCRFYDTEGLKLVSDFHIRLHNKK---KKQGKRITGLQFFPGDPDEVLVTS----NDSRIRIYDGRDKDLVHKFKG 542 (712)
T ss_pred ----EEEEEEccCCeEEEeeeEeeccCc---cccCceeeeeEecCCCCCeEEEec----CCCceEEEeccchhhhhhhcc
Confidence 23444444443221 1111000 11122688889887433 455555 466799999865554333332
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT 403 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~ 403 (776)
....-....+.| +.++..|+..+ ++- .+|+|+.+.-
T Consensus 543 ~~n~~SQ~~Asf-------s~Dgk~IVs~s-eDs--~VYiW~~~~~ 578 (712)
T KOG0283|consen 543 FRNTSSQISASF-------SSDGKHIVSAS-EDS--WVYIWKNDSF 578 (712)
T ss_pred cccCCcceeeeE-------ccCCCEEEEee-cCc--eEEEEeCCCC
Confidence 111000011122 22333455555 333 7999987544
No 251
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.68 E-value=2.4e-07 Score=89.29 Aligned_cols=171 Identities=16% Similarity=0.070 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchh------------hhhhhhhccCC----
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK------------FEASIKHNCGR---- 616 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~------------~~~~~~~~~~~---- 616 (776)
+++-||++||...+..+ |......+...|.+.++..+.+|-+---..+.. ........|-.
T Consensus 3 ~k~riLcLHG~~~na~i---f~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEI---FRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD 79 (212)
T ss_dssp ---EEEEE--TT--HHH---HHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-
T ss_pred CCceEEEeCCCCcCHHH---HHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC
Confidence 45789999998776653 222333445556565899999986521100000 00111112211
Q ss_pred -ccHHHHHHHHHHHHHc----CCCCCCcEEEEeechHHHHHHHHHhhC--------CCceEEEEEcCCCCCccccccccc
Q 004067 617 -IDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPVTSWDGYDTFYT 683 (776)
Q Consensus 617 -~~~~D~~~~i~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~--------~~~~~~~v~~~~~~~~~~~~~~~~ 683 (776)
....++..+++++.+. +.. .+|+|+|.||.+|..++... ...++.+|.+++.......
T Consensus 80 ~~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~----- 150 (212)
T PF03959_consen 80 DHEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD----- 150 (212)
T ss_dssp SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE------
T ss_pred cccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh-----
Confidence 1245566666666543 322 48999999999999888631 1246888888876432110
Q ss_pred ccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 684 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+ .......+++.|+|.++|.+|..++++.+..+++.+... .+++.+++ ||.+
T Consensus 151 -------------~---~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~v 202 (212)
T PF03959_consen 151 -------------Y---QELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHV 202 (212)
T ss_dssp -------------G---TTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS-
T ss_pred -------------h---hhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcC
Confidence 0 000124456899999999999999999999999998654 67777765 8866
No 252
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.65 E-value=1.5e-06 Score=87.47 Aligned_cols=278 Identities=12% Similarity=-0.000 Sum_probs=159.7
Q ss_pred cCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCC-CccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCC
Q 004067 124 GLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSC-SKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLI 199 (776)
Q Consensus 124 ~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~ 199 (776)
..++.+..|.| -.-.|+.. .++.|++|++-+ +...+....+ ...+..+.||++|..++-.+ +..|-+||++|
T Consensus 214 ~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 214 TKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 35788888888 55566655 678899999876 3333133333 33488999999999988776 45799999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
|+..+=...+.- ..-+.+.||+..+++.....
T Consensus 290 G~~~~~f~~~~~------------------~~cvkf~pd~~n~fl~G~sd------------------------------ 321 (503)
T KOG0282|consen 290 GQVLSRFHLDKV------------------PTCVKFHPDNQNIFLVGGSD------------------------------ 321 (503)
T ss_pred ceEEEEEecCCC------------------ceeeecCCCCCcEEEEecCC------------------------------
Confidence 987654333321 22456899997676654321
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL 359 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 359 (776)
..|..||+.++++.+- ...+-+.+..+.|-++|+..+.++ ++..+.+|+...+..........
T Consensus 322 -----~ki~~wDiRs~kvvqe--------Yd~hLg~i~~i~F~~~g~rFissS----Ddks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 322 -----KKIRQWDIRSGKVVQE--------YDRHLGAILDITFVDEGRRFISSS----DDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred -----CcEEEEeccchHHHHH--------HHhhhhheeeeEEccCCceEeeec----cCccEEEEEcCCCccchhhcchh
Confidence 4578999999985432 123456788899999999777666 34457777766555422211110
Q ss_pred CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC----ceeeccccCCeE--EEEEEeecCCCcEEEEEEc
Q 004067 360 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----TCLGPITEGDWM--VEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g----~~~~~lt~~~~~--~~~~~~~s~dg~~i~~~~~ 433 (776)
. ....--...|.+. .++..+ -+. .|+++...- .+.+.+..+... ... +.|||||++|+.-.
T Consensus 385 ~-hsmP~~~~~P~~~-------~~~aQs-~dN--~i~ifs~~~~~r~nkkK~feGh~vaGys~~-v~fSpDG~~l~SGd- 451 (503)
T KOG0282|consen 385 M-HTMPCLTLHPNGK-------WFAAQS-MDN--YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ-VDFSPDGRTLCSGD- 451 (503)
T ss_pred h-ccCcceecCCCCC-------eehhhc-cCc--eEEEEecccccccCHhhhhcceeccCceee-EEEcCCCCeEEeec-
Confidence 0 0000001112221 122111 122 344433211 112233332111 122 34999999755443
Q ss_pred cCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEE
Q 004067 434 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLC 495 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~ 495 (776)
.++ ...+|..+.. .....+..+.+ +..+.|-|-...-+.+++= .+.|.+|
T Consensus 452 sdG--~v~~wdwkt~-------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w---~G~Ikiw 502 (503)
T KOG0282|consen 452 SDG--KVNFWDWKTT-------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGW---DGLIKIW 502 (503)
T ss_pred CCc--cEEEeechhh-------hhhhccccCCcceEEEEecCCCcceeEeccc---CceeEec
Confidence 333 3667777642 25666666644 4577888887766666542 2345554
No 253
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.64 E-value=8.9e-07 Score=82.93 Aligned_cols=195 Identities=16% Similarity=0.157 Sum_probs=106.4
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCC-chhhhhhhhhccCCccHHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR-GLKFEASIKHNCGRIDAEDQLTGAEWLIK 631 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~-~~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 631 (776)
+.-+++|-|-|++. .....| ...|.. .+.++.+.+||.+.. +.++ ..|+...++.+..
T Consensus 7 ~~~L~cfP~AGGsa-~~fr~W-------~~~lp~-~iel~avqlPGR~~r~~ep~------------~~di~~Lad~la~ 65 (244)
T COG3208 7 RLRLFCFPHAGGSA-SLFRSW-------SRRLPA-DIELLAVQLPGRGDRFGEPL------------LTDIESLADELAN 65 (244)
T ss_pred CceEEEecCCCCCH-HHHHHH-------HhhCCc-hhheeeecCCCcccccCCcc------------cccHHHHHHHHHH
Confidence 33455566655443 322222 333333 589999999988754 2211 3345555555544
Q ss_pred c-C-CCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEc---CCCCCccc----c-cccccc---cccCCCCC---
Q 004067 632 Q-G-LAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSG---APVTSWDG----Y-DTFYTE---KYMGLPSE--- 692 (776)
Q Consensus 632 ~-~-~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~---~~~~~~~~----~-~~~~~~---~~~~~~~~--- 692 (776)
. . ..-....+++||||||++|.-+|.+.. ....+..+. +|..+-.. . +..+.+ .+-|.|.+
T Consensus 66 el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~le 145 (244)
T COG3208 66 ELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLE 145 (244)
T ss_pred HhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhc
Confidence 3 1 123357999999999999999986521 112333322 23111100 0 000101 11233321
Q ss_pred CccchhcCCh-----------hh--hhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCC
Q 004067 693 DPVGYEYSSV-----------MH--HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 759 (776)
Q Consensus 693 ~~~~~~~~~~-----------~~--~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 759 (776)
+.+.+...-| .. .-..+.+|+.++.|++|..+..+......+.. +..+++.+++| ||.+ -..
T Consensus 146 d~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t---~~~f~l~~fdG-gHFf-l~~ 220 (244)
T COG3208 146 DPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHT---KGDFTLRVFDG-GHFF-LNQ 220 (244)
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhh---cCCceEEEecC-ccee-hhh
Confidence 2111111100 01 12467799999999999998776665555544 56899999987 9977 445
Q ss_pred cHHHHHHHHHHHHH
Q 004067 760 DRIYMEERIWEFIE 773 (776)
Q Consensus 760 ~~~~~~~~~~~fl~ 773 (776)
...++...+.+.+.
T Consensus 221 ~~~~v~~~i~~~l~ 234 (244)
T COG3208 221 QREEVLARLEQHLA 234 (244)
T ss_pred hHHHHHHHHHHHhh
Confidence 66667777766664
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.64 E-value=1.5e-05 Score=81.09 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=173.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+...+|||-|.++++.... +|-+|.-.... .++.. .+..+..+.|||
T Consensus 35 ~~~~~~SP~G~~l~~~~~~------~V~~~~g~~~~--~l~~~-----------------------~~~~V~~~~fSP-- 81 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAA------GVECWGGPSKA--KLVRF-----------------------RHPDVKYLDFSP-- 81 (561)
T ss_pred hhheeecCcchheehhhcc------ceEEccccchh--heeee-----------------------ecCCceecccCc--
Confidence 4678999999999865432 35555543332 22211 123567788888
Q ss_pred CCceEEEEe----------------CCCcEEEEeCCCCccceecCCCCCCC--cc-CceeCCCCCEEEEEECCcEEEEec
Q 004067 137 SKKKIIMVP----------------LPDGIYFQDLSCSKPELKLSSSSCSP--VI-DPHLSSDGTMIAFVRDCELHVLNL 197 (776)
Q Consensus 137 ~dg~~l~~~----------------~~~~l~~~d~~~~~~~~~l~~~~~~~--~~-~~~~SpDg~~la~~~~~~l~~~~l 197 (776)
.+++|..- ..+++++||..+|... .--.....+ .. ...||-|.+++|.+..+.|+++.+
T Consensus 82 -~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv-~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 82 -NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV-FSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI 159 (561)
T ss_pred -ccceeeeeccCCccChhhccCCccccCceeEEeccCceeE-eeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence 99988753 2346999999999876 222221111 22 478999999999999999999998
Q ss_pred CCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCC--CCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
|+...+.....-. ..| +..+.|||- +..|+|..-....
T Consensus 160 -t~n~~~~p~~~lr---~~g------------i~dFsisP~~n~~~la~~tPEk~~------------------------ 199 (561)
T COG5354 160 -TDNIEEHPFKNLR---PVG------------ILDFSISPEGNHDELAYWTPEKLN------------------------ 199 (561)
T ss_pred -CCccccCchhhcc---ccc------------eeeEEecCCCCCceEEEEccccCC------------------------
Confidence 6554433221100 111 447889996 4567776532221
Q ss_pred CCCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC-------ceEEEEEEECC
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-------TKLKVLKFDIK 347 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------~~~~l~~~d~~ 347 (776)
....+.+|.+-.+... +-++ +. ..--.+.|-+.|+.+.+...+.- +...||++++.
T Consensus 200 -------kpa~~~i~sIp~~s~l~tk~l-------fk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 200 -------KPAMVRILSIPKNSVLVTKNL-------FK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred -------CCcEEEEEEccCCCeeeeeee-------Ee--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 1133455555433321 1111 11 12235889999995544322221 13579999987
Q ss_pred CCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcE
Q 004067 348 TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQ 427 (776)
Q Consensus 348 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~ 427 (776)
...++....-.++.. +-.|.| .+++|..++.- ....+-..++.|. .+..-.... .+-..|||.+++
T Consensus 264 e~~i~V~~~~~~pVh---df~W~p-------~S~~F~vi~g~-~pa~~s~~~lr~N-l~~~~Pe~~--rNT~~fsp~~r~ 329 (561)
T COG5354 264 ERSIPVEKDLKDPVH---DFTWEP-------LSSRFAVISGY-MPASVSVFDLRGN-LRFYFPEQK--RNTIFFSPHERY 329 (561)
T ss_pred ccccceeccccccce---eeeecc-------cCCceeEEecc-cccceeecccccc-eEEecCCcc--cccccccCcccE
Confidence 555544322122211 111212 34556555411 1235556666665 332222211 122348999999
Q ss_pred EEEEEccCCCceeeEEEEEeCCCCCCccccceee--cCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 428 VYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL--TNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 428 i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l--~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
|++..-+.....+.+|... | ....+ +...+..-..|||||+.+.....+
T Consensus 330 il~agF~nl~gni~i~~~~----~-----rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPA----G-----RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred EEEecCCccccceEEeccC----C-----ceEEEEEeecCCceEeeccCCceEEEecCCC
Confidence 9998766544445555443 2 23333 222233345899999877665544
No 255
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=6.3e-05 Score=70.49 Aligned_cols=275 Identities=12% Similarity=0.080 Sum_probs=153.6
Q ss_pred CeeeEEEeecCCC-ceEEEEe-CCCcEEEEeCCCCccc-e--ecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCC
Q 004067 126 GVTRYEWVKTSSK-KKIIMVP-LPDGIYFQDLSCSKPE-L--KLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 126 ~~~~~~~sp~~~d-g~~l~~~-~~~~l~~~d~~~~~~~-~--~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~ 199 (776)
.+-.+.|+| - |..||.. .+..|.+|+..++... . .|..+....++..+|||.|++||..+-. -+-++.-.+
T Consensus 16 r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 16 RVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred cEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 467889999 5 5555554 6677999998854322 1 2333333348899999999999887743 455555556
Q ss_pred CceeEEee-CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 200 NEQRQLTH-GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 200 g~~~~lt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
++..-+.. .+.. .| +..++||++|+.||.-+.++
T Consensus 93 ~efecv~~lEGHE-------------nE---VK~Vaws~sG~~LATCSRDK----------------------------- 127 (312)
T KOG0645|consen 93 GEFECVATLEGHE-------------NE---VKCVAWSASGNYLATCSRDK----------------------------- 127 (312)
T ss_pred CceeEEeeeeccc-------------cc---eeEEEEcCCCCEEEEeeCCC-----------------------------
Confidence 65544432 1111 00 44788999999999887653
Q ss_pred CCCCCeEEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-CCce---EE
Q 004067 279 GASNVKVRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQR---KV 353 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~g~~---~~ 353 (776)
.+++|..+.+. ...+.. +.++...+-.+.|.|--..|+..+ -+..|..|.-. .+.. +.
T Consensus 128 -------SVWiWe~deddEfec~aV------L~~HtqDVK~V~WHPt~dlL~S~S----YDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 128 -------SVWIWEIDEDDEFECIAV------LQEHTQDVKHVIWHPTEDLLFSCS----YDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred -------eEEEEEecCCCcEEEEee------eccccccccEEEEcCCcceeEEec----cCCeEEEEeecCCCCeeEEEE
Confidence 46788776443 333332 144555677799999776777665 34456666655 4433 34
Q ss_pred EEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEE--EeCCCceeeccccCCeEEEEEEeecCCCcEEEEE
Q 004067 354 ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYL--HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFT 431 (776)
Q Consensus 354 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~--~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~ 431 (776)
|..+....|... |.+. +.-+...+.++.-.||+ .++.+--. ..+..++ |. +| ++.+
T Consensus 191 l~g~~~TVW~~~---F~~~--------G~rl~s~sdD~tv~Iw~~~~~~~~~~s-------r~~Y~v~-W~-~~--~IaS 248 (312)
T KOG0645|consen 191 LDGHENTVWSLA---FDNI--------GSRLVSCSDDGTVSIWRLYTDLSGMHS-------RALYDVP-WD-NG--VIAS 248 (312)
T ss_pred ecCccceEEEEE---ecCC--------CceEEEecCCcceEeeeeccCcchhcc-------cceEeee-ec-cc--ceEe
Confidence 444555567543 3331 22345556677556665 22322111 2223333 54 33 4555
Q ss_pred EccCCCceeeEEEEEeCCCCCCccccceeec-----CCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEE
Q 004067 432 GTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-----NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 496 (776)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~ 496 (776)
+..++. +.||+-.-..++. ....+. .+..++.+.+.|.++.++...+.+ +.+..+.
T Consensus 249 ~ggD~~--i~lf~~s~~~d~p----~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD---G~v~~W~ 309 (312)
T KOG0645|consen 249 GGGDDA--IRLFKESDSPDEP----SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD---GIVNFWE 309 (312)
T ss_pred ccCCCE--EEEEEecCCCCCc----hHHHHHhhhcccccccceEEEcCCCCCceeecCCC---ceEEEEE
Confidence 544443 5666555211111 112222 112467889999766666655443 3455443
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.63 E-value=7.7e-05 Score=78.14 Aligned_cols=312 Identities=11% Similarity=0.052 Sum_probs=148.7
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecCCccccee
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQ 224 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~ 224 (776)
.++.|.++|.++.+....+..+.. ......+||||+++..... +.|.++|+.+++...-...+..
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~------------- 79 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN------------- 79 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-------------
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-------------
Confidence 457899999999886645544322 2345789999998666553 5799999999875433333321
Q ss_pred cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEE-EEcc
Q 004067 225 EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQ 303 (776)
Q Consensus 225 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-l~~~ 303 (776)
..++++||||++|+...... ..+.++|.++.+... +...
T Consensus 80 -----~~~i~~s~DG~~~~v~n~~~-----------------------------------~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 80 -----PRGIAVSPDGKYVYVANYEP-----------------------------------GTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp -----EEEEEE--TTTEEEEEEEET-----------------------------------TEEEEEETTT--EEEEEE--
T ss_pred -----cceEEEcCCCCEEEEEecCC-----------------------------------CceeEeccccccceeecccc
Confidence 34788999999887665432 347889988877543 4331
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCC-e
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-G 382 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 382 (776)
. .+. ......+..+.-||+...+++... +..+|+++|........+..-....+.. +. .++++ +
T Consensus 120 ~-~~~-~~~~~Rv~aIv~s~~~~~fVv~lk---d~~~I~vVdy~d~~~~~~~~i~~g~~~~-D~---------~~dpdgr 184 (369)
T PF02239_consen 120 G-MPV-DGPESRVAAIVASPGRPEFVVNLK---DTGEIWVVDYSDPKNLKVTTIKVGRFPH-DG---------GFDPDGR 184 (369)
T ss_dssp E-E-T-TTS---EEEEEE-SSSSEEEEEET---TTTEEEEEETTTSSCEEEEEEE--TTEE-EE---------EE-TTSS
T ss_pred c-ccc-cccCCCceeEEecCCCCEEEEEEc---cCCeEEEEEeccccccceeeeccccccc-cc---------ccCcccc
Confidence 0 000 012234556677888875444432 2346899998765433322222111111 11 22233 3
Q ss_pred EEEEeccCCceEEEEEeCCCceeecccc-CC--e--EEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCC---CCc
Q 004067 383 FIWASEKTGFRHLYLHDINGTCLGPITE-GD--W--MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW---NHT 454 (776)
Q Consensus 383 ~~~~s~~~g~~~l~~~~~~g~~~~~lt~-~~--~--~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g---~~~ 454 (776)
+++.+ ..+...|.++|..+++...+.. +. . ....+ -.+....++.+...... ..-+..-+. .. ...
T Consensus 185 y~~va-~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~--php~~g~vw~~~~~~~~-~~~~ig~~~--v~v~d~~~ 258 (369)
T PF02239_consen 185 YFLVA-ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF--PHPGFGPVWATSGLGYF-AIPLIGTDP--VSVHDDYA 258 (369)
T ss_dssp EEEEE-EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE--EETTTEEEEEEEBSSSS-EEEEEE--T--TT-STTTB
T ss_pred eeeec-ccccceeEEEeeccceEEEEeeccccccccccccc--cCCCcceEEeeccccce-ecccccCCc--cccchhhc
Confidence 33332 2223388899988776554322 11 1 12222 24444444444332110 011111111 00 000
Q ss_pred cccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhhccCCCCceEEEEEcCCC
Q 004067 455 LEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDG 534 (776)
Q Consensus 455 ~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dg 534 (776)
-..++++...++...+..+||++++............|.++|..+-+.+..+..... ...-.++|. .||
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~----------~~~~h~ef~-~dG 327 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG----------KRVVHMEFN-PDG 327 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------------EEEEEE--TTS
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC----------CcEeccEEC-CCC
Confidence 013445554443467788999998888733333357899999877754444432110 013344554 478
Q ss_pred cEEEEEEEc
Q 004067 535 TVLYGALYK 543 (776)
Q Consensus 535 ~~l~~~~~~ 543 (776)
..+...++.
T Consensus 328 ~~v~vS~~~ 336 (369)
T PF02239_consen 328 KEVWVSVWD 336 (369)
T ss_dssp SEEEEEEE-
T ss_pred CEEEEEEec
Confidence 777777775
No 257
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.62 E-value=8.3e-08 Score=98.77 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCC-cEEEEECCCCC--CCCchhhhhhhhhc
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNRGT--ARRGLKFEASIKHN 613 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~d~rg~--g~~~~~~~~~~~~~ 613 (776)
|...+|.|+.. ..+.||||++|||..... ....+.++ ...|+++| ++|+++|||-. |.-.-.........
T Consensus 80 L~LNIwaP~~~---a~~~PVmV~IHGG~y~~G--s~s~~~yd--gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~ 152 (491)
T COG2272 80 LYLNIWAPEVP---AEKLPVMVYIHGGGYIMG--SGSEPLYD--GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAF 152 (491)
T ss_pred eeEEeeccCCC---CCCCcEEEEEeccccccC--CCcccccC--hHHHHhcCCEEEEEeCcccccceeeehhhccccccc
Confidence 88899999832 157899999999753321 11111122 46788887 99999999942 11111001100111
Q ss_pred cCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCC
Q 004067 614 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~ 674 (776)
....-+.|++.+++|+.++ ..-|+++|.|+|+|.|++.++.+++. ...+|+.+|+.+|...
T Consensus 153 ~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 153 ASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 1123488999999999886 44599999999999999999988875 2236777777776553
No 258
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.62 E-value=2e-07 Score=72.88 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=48.7
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
|.+|.+..|.|++. ++++|+++||..+... .+..+++.|+++||.|+++|+||+|.|.
T Consensus 1 G~~L~~~~w~p~~~-----~k~~v~i~HG~~eh~~-------ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPENP-----PKAVVVIVHGFGEHSG-------RYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CcEEEEEEecCCCC-----CCEEEEEeCCcHHHHH-------HHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 56799999999872 5689999999765543 4566799999999999999999999986
No 259
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=9.7e-06 Score=80.75 Aligned_cols=196 Identities=16% Similarity=0.155 Sum_probs=121.8
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe-ecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV-KTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s-p~~ 136 (776)
..|.|.++.+.|+|+.-.. ..|+++++++++.+.+.. .+.....+. +
T Consensus 3 Egp~~d~~~g~l~~~D~~~----~~i~~~~~~~~~~~~~~~--------------------------~~~~G~~~~~~-- 50 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPG----GRIYRVDPDTGEVEVIDL--------------------------PGPNGMAFDRP-- 50 (246)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEEETTTTEEEEEES--------------------------SSEEEEEEECT--
T ss_pred cceEEECCCCEEEEEEcCC----CEEEEEECCCCeEEEEec--------------------------CCCceEEEEcc--
Confidence 5789999888899987654 479999999998766553 234556677 5
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCC-----CCCCccCceeCCCCCEEEEEEC----------CcEEEEecCCCc
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSS-----SCSPVIDPHLSSDGTMIAFVRD----------CELHVLNLLINE 201 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~-----~~~~~~~~~~SpDg~~la~~~~----------~~l~~~~l~~g~ 201 (776)
| ..|++.....+.++|+.+++.+ .+... .........+.|||+ |.+... +.||.++.+ ++
T Consensus 51 -~-g~l~v~~~~~~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~ 125 (246)
T PF08450_consen 51 -D-GRLYVADSGGIAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK 125 (246)
T ss_dssp -T-SEEEEEETTCEEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE
T ss_pred -C-CEEEEEEcCceEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce
Confidence 6 4566666677777799998877 43332 222355689999998 555543 248999988 77
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.+.+...-. ..++++|||||+.|++.....
T Consensus 126 ~~~~~~~~~------------------~pNGi~~s~dg~~lyv~ds~~-------------------------------- 155 (246)
T PF08450_consen 126 VTVVADGLG------------------FPNGIAFSPDGKTLYVADSFN-------------------------------- 155 (246)
T ss_dssp EEEEEEEES------------------SEEEEEEETTSSEEEEEETTT--------------------------------
T ss_pred EEEEecCcc------------------cccceEECCcchheeeccccc--------------------------------
Confidence 666543321 134788999999887654221
Q ss_pred CCeEEEEEEEcC--CCceE---E-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 282 NVKVRLGVVSAA--GGPVS---W-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 282 ~~~~~l~~~d~~--~~~~~---~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|+.++++ +++.. . ... ....+....+++..+|++++ +.. ....|+++|+++.....+
T Consensus 156 ---~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~g~pDG~~vD~~G~l~v-a~~---~~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 156 ---GRIWRFDLDADGGELSNRRVFIDF-------PGGPGYPDGLAVDSDGNLWV-ADW---GGGRIVVFDPDGKLLREI 220 (246)
T ss_dssp ---TEEEEEEEETTTCCEEEEEEEEE--------SSSSCEEEEEEEBTTS-EEE-EEE---TTTEEEEEETTSCEEEEE
T ss_pred ---ceeEEEeccccccceeeeeeEEEc-------CCCCcCCCcceEcCCCCEEE-EEc---CCCEEEEECCCccEEEEE
Confidence 235666654 33221 1 121 22224567789999997433 322 334699999984334444
No 260
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.60 E-value=6.9e-06 Score=77.86 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=124.8
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 309 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 309 (776)
+....|+|||..++....| .+|++|+..+-......+
T Consensus 50 I~~~~F~P~gs~~aSgG~D------------------------------------r~I~LWnv~gdceN~~~l------- 86 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSD------------------------------------RAIVLWNVYGDCENFWVL------- 86 (338)
T ss_pred EEEEEECCCCCeEeecCCc------------------------------------ceEEEEeccccccceeee-------
Confidence 3467899999988865543 468899876654333322
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (776)
..+.+.+..+.|.+||..|+... .+.+++.||+++|+...-...... ++.. ..|... +-.++-+.+.
T Consensus 87 kgHsgAVM~l~~~~d~s~i~S~g----tDk~v~~wD~~tG~~~rk~k~h~~-~vNs---~~p~rr-----g~~lv~Sgsd 153 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDGSHILSCG----TDKTVRGWDAETGKRIRKHKGHTS-FVNS---LDPSRR-----GPQLVCSGSD 153 (338)
T ss_pred ccccceeEeeeeccCCCEEEEec----CCceEEEEecccceeeehhccccc-eeee---cCcccc-----CCeEEEecCC
Confidence 57888999999999999888776 567899999999986554433222 2211 112111 1123333345
Q ss_pred CCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeE
Q 004067 390 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKH 468 (776)
Q Consensus 390 ~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~ 468 (776)
++ ++.+||...+...++-.....+..+. |..++..++-. .-++ .+++|.+.- +. -.-.+..+. .+.
T Consensus 154 D~--t~kl~D~R~k~~~~t~~~kyqltAv~-f~d~s~qv~sg-gIdn--~ikvWd~r~---~d----~~~~lsGh~DtIt 220 (338)
T KOG0265|consen 154 DG--TLKLWDIRKKEAIKTFENKYQLTAVG-FKDTSDQVISG-GIDN--DIKVWDLRK---ND----GLYTLSGHADTIT 220 (338)
T ss_pred Cc--eEEEEeecccchhhccccceeEEEEE-ecccccceeec-cccC--ceeeecccc---Cc----ceEEeecccCcee
Confidence 66 89999988776666555556666654 88888765444 3333 378888853 11 233444443 366
Q ss_pred EEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 469 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 469 ~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
.+++||+|.++.-.+-. ..+.++|..
T Consensus 221 ~lsls~~gs~llsnsMd----~tvrvwd~r 246 (338)
T KOG0265|consen 221 GLSLSRYGSFLLSNSMD----NTVRVWDVR 246 (338)
T ss_pred eEEeccCCCcccccccc----ceEEEEEec
Confidence 78999999988766443 247777653
No 261
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.60 E-value=8.5e-06 Score=77.41 Aligned_cols=296 Identities=11% Similarity=0.123 Sum_probs=168.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCC----CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT----CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+..+|||||+.+| .|.....|.++|.+- .+++.+..... ++--+--+-+ -.+...+..+.|.
T Consensus 116 R~aafs~DG~lvA-----TGsaD~SIKildvermlaks~~~em~~~~~-----qa~hPvIRTl----YDH~devn~l~FH 181 (430)
T KOG0640|consen 116 RAAAFSPDGSLVA-----TGSADASIKILDVERMLAKSKPKEMISGDT-----QARHPVIRTL----YDHVDEVNDLDFH 181 (430)
T ss_pred eeeeeCCCCcEEE-----ccCCcceEEEeehhhhhhhcchhhhccCCc-----ccCCceEeeh----hhccCcccceeec
Confidence 4678999999999 444456799998761 11111111000 0000000000 0123467888999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccce---ecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPEL---KLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~---~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~ 208 (776)
| ....|+.. .++.|.+.|.+....++ .++.. ..+..+.|.|.|..|+...+. -+.++|+.|-+.-. ..+
T Consensus 182 P---re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv-san 255 (430)
T KOG0640|consen 182 P---RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV-SAN 255 (430)
T ss_pred c---hhheEEeccCCCeEEEEecccHHHHHHHHHhhcc--ceeeeEeecCCCceEEEecCCCceeEEeccceeEee-ecC
Confidence 9 77666655 77889999987654442 23322 247889999999999888775 47888887665432 222
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
+.. +.-+.+..+.+|+.|+.-+..+.| ..|.
T Consensus 256 Pd~-------------qht~ai~~V~Ys~t~~lYvTaSkD------------------------------------G~Ik 286 (430)
T KOG0640|consen 256 PDD-------------QHTGAITQVRYSSTGSLYVTASKD------------------------------------GAIK 286 (430)
T ss_pred ccc-------------ccccceeEEEecCCccEEEEeccC------------------------------------CcEE
Confidence 321 111224577899999854444432 3478
Q ss_pred EEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceee--
Q 004067 289 VVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVN-- 364 (776)
Q Consensus 289 ~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~-- 364 (776)
+||--+++... +.- ..+...+-...|+.|||+|+... .+..+++|.+.+|..-.....-+. +-..
T Consensus 287 lwDGVS~rCv~t~~~-------AH~gsevcSa~Ftkn~kyiLsSG----~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~r 355 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGN-------AHGGSEVCSAVFTKNGKYILSSG----KDSTVKLWEISTGRMLKEYTGAGTTGRQKHR 355 (430)
T ss_pred eeccccHHHHHHHHh-------hcCCceeeeEEEccCCeEEeecC----CcceeeeeeecCCceEEEEecCCcccchhhh
Confidence 88877766432 211 12344677899999999776543 567799999988876444332211 0000
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc-ccC-CeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI-TEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l-t~~-~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
.+..|.. ..+.++|.-+..+ .++-||..+.....+ ..+ ...++- ..-||.+- .+++-+.+ .+...
T Consensus 356 tqAvFNh-------tEdyVl~pDEas~--slcsWdaRtadr~~l~slgHn~a~R~-i~HSP~~p-~FmTcsdD--~raRF 422 (430)
T KOG0640|consen 356 TQAVFNH-------TEDYVLFPDEASN--SLCSWDARTADRVALLSLGHNGAVRW-IVHSPVEP-AFMTCSDD--FRARF 422 (430)
T ss_pred hhhhhcC-------ccceEEccccccC--ceeeccccchhhhhhcccCCCCCceE-EEeCCCCC-ceeeeccc--ceeee
Confidence 0122221 2234666666666 899999877654443 333 233333 33577665 33333333 23455
Q ss_pred EEEE
Q 004067 443 YCAK 446 (776)
Q Consensus 443 ~~~~ 446 (776)
|.-.
T Consensus 423 Wyrr 426 (430)
T KOG0640|consen 423 WYRR 426 (430)
T ss_pred eeec
Confidence 5443
No 262
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.59 E-value=1.2e-06 Score=80.24 Aligned_cols=185 Identities=15% Similarity=0.089 Sum_probs=109.3
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC------CCCch---------------hhhhhhh
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT------ARRGL---------------KFEASIK 611 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~------g~~~~---------------~~~~~~~ 611 (776)
+.+-||++||.-.+.. .|......+...+.+. +-.+.+|-+-. ....+ .|...-.
T Consensus 4 ~k~rvLcLHGfrQsg~---~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~ 79 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGK---VFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNE 79 (230)
T ss_pred CCceEEEecchhhccH---HHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccc
Confidence 4578999999654433 2323333345556555 77777776521 00100 0100000
Q ss_pred -hccCCccHHH-HHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC--C------CceEEEEEcCCCCCccccccc
Q 004067 612 -HNCGRIDAED-QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--P------DVFQCAVSGAPVTSWDGYDTF 681 (776)
Q Consensus 612 -~~~~~~~~~D-~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--~------~~~~~~v~~~~~~~~~~~~~~ 681 (776)
........+. +....+++++++.-| +|+|+|.|+.++.++++.. . ..|+-+|.++|+..+.
T Consensus 80 ~~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~----- 150 (230)
T KOG2551|consen 80 ASFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPS----- 150 (230)
T ss_pred cccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCc-----
Confidence 0000111233 344455666666557 8999999999999998721 1 1256777777664220
Q ss_pred ccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcH
Q 004067 682 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 761 (776)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 761 (776)
. ...-..+...+++|.|.|.|+.|.+++...+..+++.+.. ..++..| +||.+.. .
T Consensus 151 -------------~---~~~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~----a~vl~Hp-ggH~VP~---~ 206 (230)
T KOG2551|consen 151 -------------K---KLDESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKD----ATVLEHP-GGHIVPN---K 206 (230)
T ss_pred -------------c---hhhhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCC----CeEEecC-CCccCCC---c
Confidence 0 0111223457889999999999999999999999998843 3555555 4997633 3
Q ss_pred HHHHHHHHHHHHH
Q 004067 762 IYMEERIWEFIER 774 (776)
Q Consensus 762 ~~~~~~~~~fl~~ 774 (776)
..+.+.+.+||..
T Consensus 207 ~~~~~~i~~fi~~ 219 (230)
T KOG2551|consen 207 AKYKEKIADFIQS 219 (230)
T ss_pred hHHHHHHHHHHHH
Confidence 3566777777764
No 263
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=4.8e-05 Score=74.79 Aligned_cols=222 Identities=13% Similarity=0.067 Sum_probs=130.8
Q ss_pred CceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
-.+..+| ++..++|.+... .-++++|..+|+..+....+. + ++ -..--.|||
T Consensus 8 H~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a~~-----------g---------RH-FyGHg~fs~-- 60 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWAPP-----------G---------RH-FYGHGVFSP-- 60 (305)
T ss_pred cceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcCCC-----------C---------CE-EecCEEEcC--
Confidence 4677899 666666665543 469999999998865553222 0 00 112347899
Q ss_pred CCceEEEEeCC------CcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEEC-------------------C
Q 004067 137 SKKKIIMVPLP------DGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD-------------------C 190 (776)
Q Consensus 137 ~dg~~l~~~~~------~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~-------------------~ 190 (776)
||++|+.+.+ +.|-+||...+-.+ ..+..+ +-....+.+.|||+.|+..-. .
T Consensus 61 -dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~-GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 61 -DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH-GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred -CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC-CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 9999998833 45889999844333 122221 112466899999988877642 1
Q ss_pred cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCc
Q 004067 191 ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQ 270 (776)
Q Consensus 191 ~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (776)
+|-++|..+|+...-..-+.. ...++ ++.+++++||. ++|.....+....
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~---~~~lS----------iRHLa~~~~G~-V~~a~Q~qg~~~~---------------- 188 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPD---LHQLS----------IRHLAVDGDGT-VAFAMQYQGDPGD---------------- 188 (305)
T ss_pred ceEEEecCCCceeeeeecCcc---ccccc----------eeeEEecCCCc-EEEEEecCCCCCc----------------
Confidence 477777788875332111110 00011 56889999987 5665543321110
Q ss_pred ceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 271 EDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 271 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
...-|.++...+ ....+..+.. ....-.+|+.++++++||..++.++.|+. .+.+||.++|+
T Consensus 189 ------------~~PLva~~~~g~-~~~~~~~p~~--~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~tg~ 250 (305)
T PF07433_consen 189 ------------APPLVALHRRGG-ALRLLPAPEE--QWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAATGR 250 (305)
T ss_pred ------------cCCeEEEEcCCC-cceeccCChH--HHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCCCC
Confidence 001133333222 2333332211 11234679999999999998888876653 47888999998
Q ss_pred eEEEEE
Q 004067 351 RKVILV 356 (776)
Q Consensus 351 ~~~l~~ 356 (776)
......
T Consensus 251 ~~~~~~ 256 (305)
T PF07433_consen 251 LLGSVP 256 (305)
T ss_pred Eeeccc
Confidence 766543
No 264
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=1.8e-05 Score=75.45 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=148.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
...+||+-|.+||---. .+.|.+||..|-...++.+ .+-..+.+..||+
T Consensus 27 ~~~~Fs~~G~~lAvGc~-----nG~vvI~D~~T~~iar~ls-----------------------aH~~pi~sl~WS~--- 75 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA-----NGRVVIYDFDTFRIARMLS-----------------------AHVRPITSLCWSR--- 75 (405)
T ss_pred ceEEeccCcceeeeecc-----CCcEEEEEccccchhhhhh-----------------------ccccceeEEEecC---
Confidence 77899999999994322 3469999999876533321 1225789999999
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC--EEEEEECCcEEEEecCCCceeEEeeCCCCCce
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT--MIAFVRDCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~--~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||+.|+.+ .+..|.+||+..|....++-.. . .+....|.|-.+ -+|...+..-++.++..+..+.|..+..++..
T Consensus 76 dgr~LltsS~D~si~lwDl~~gs~l~rirf~-s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 76 DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-S-PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN 153 (405)
T ss_pred CCCEeeeecCCceeEEEeccCCCceeEEEcc-C-ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc
Confidence 99999976 7788999999888765343332 2 477889998444 44444555677777777666666554433111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.. ...-.|.+-|++|+... ++..|.+++.++
T Consensus 154 ~s-------------as~~~fdr~g~yIitGt------------------------------------sKGkllv~~a~t 184 (405)
T KOG1273|consen 154 SS-------------ASHGVFDRRGKYIITGT------------------------------------SKGKLLVYDAET 184 (405)
T ss_pred cc-------------cccccccCCCCEEEEec------------------------------------CcceEEEEecch
Confidence 00 01123677788776533 224577888877
Q ss_pred CceEEE-EcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-------CCceEEEEEecc----Cce
Q 004067 295 GPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-------TGQRKVILVEEL----DSW 362 (776)
Q Consensus 295 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-------~g~~~~l~~~~~----~~~ 362 (776)
-+...- .. .....+..+.+|-.|+.+++-+ .+..|..|+.. .|+++...+-.+ ..|
T Consensus 185 ~e~vas~ri--------ts~~~IK~I~~s~~g~~liiNt----sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 185 LECVASFRI--------TSVQAIKQIIVSRKGRFLIINT----SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred heeeeeeee--------chheeeeEEEEeccCcEEEEec----CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 654321 00 0123567788999998666543 34456666653 122221111111 123
Q ss_pred eecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCCceeeccccCC
Q 004067 363 VNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
-. . .+++++ +++.+. .-.-.||+|....|....+..+.
T Consensus 253 k~--c---------cfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 253 KK--C---------CFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred hh--e---------eecCCccEEEecc-ccceeEEEEecCCcceeeeecCC
Confidence 21 1 222333 333332 33458999998888877776654
No 265
>PRK04940 hypothetical protein; Provisional
Probab=98.58 E-value=1.7e-06 Score=78.32 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=73.8
Q ss_pred CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC-cccccccccccccCCCCCCccchhcCChhhhhcc--CC--Cc
Q 004067 638 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS-WDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK--MK--GK 712 (776)
Q Consensus 638 ~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~--~P 712 (776)
++++|+|.|+||+.|.+++.++. ++|+++ .|... +..+. .+++.+.+ |....+ .++.. ++ ..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~aVLi-NPAv~P~~~L~-----~~ig~~~~----y~~~~~-~h~~eL~~~~p~r 126 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQVIF-NPNLFPEENME-----GKIDRPEE----YADIAT-KCVTNFREKNRDR 126 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCEEEE-CCCCChHHHHH-----HHhCCCcc----hhhhhH-HHHHHhhhcCccc
Confidence 46999999999999999999875 345444 45433 22221 12222211 111111 11111 22 34
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
++++..+.|++.++..+.+.+... ....+.+|++|.|. ..+++...|.+|+.+
T Consensus 127 ~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~---~fe~~l~~I~~F~~~ 179 (180)
T PRK04940 127 CLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFK---NISPHLQRIKAFKTL 179 (180)
T ss_pred EEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCC---CHHHHHHHHHHHHhc
Confidence 699999999999988776666422 25889999999874 477788999999853
No 266
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.58 E-value=4.1e-06 Score=87.38 Aligned_cols=263 Identities=10% Similarity=0.044 Sum_probs=153.1
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCceeE
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINEQRQ 204 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~~~~ 204 (776)
-+.+..|.| ||..|+.+.++.++++|...|....+|..+... +..++||.||++.|..+... +.+|+.+-....+
T Consensus 14 ci~d~afkP---DGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-VycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKP---DGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECC---CCceEEEecCCEEEEEeCCCcccccccccccce-EEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 577889999 999999999999999999877665477766654 88899999999988766543 5566544222222
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
..++.. +.-++|.|=...|+.-+.+
T Consensus 90 YSH~D~-------------------IQCMsFNP~~h~LasCsLs------------------------------------ 114 (1081)
T KOG1538|consen 90 YSHNDA-------------------IQCMSFNPITHQLASCSLS------------------------------------ 114 (1081)
T ss_pred eccCCe-------------------eeEeecCchHHHhhhcchh------------------------------------
Confidence 222111 2234566655555543321
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe----ccC
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE----ELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~~~ 360 (776)
+..+|..+.+.+.+- .....+-..+|..||++++... .+++|-+-+ ++|+.+...+. +.+
T Consensus 115 -dFglWS~~qK~V~K~----------kss~R~~~CsWtnDGqylalG~----~nGTIsiRN-k~gEek~~I~Rpgg~Nsp 178 (1081)
T KOG1538|consen 115 -DFGLWSPEQKSVSKH----------KSSSRIICCSWTNDGQYLALGM----FNGTISIRN-KNGEEKVKIERPGGSNSP 178 (1081)
T ss_pred -hccccChhhhhHHhh----------hhheeEEEeeecCCCcEEEEec----cCceEEeec-CCCCcceEEeCCCCCCCC
Confidence 123444433332211 1223566789999999888776 445555555 45665555443 334
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee---eccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~---~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
.|... |+|.... -.+.++.+.+-+. +|-.+.++|..+ +.|..+. .- +++-++|.++++-+...+
T Consensus 179 iwsi~---~~p~sg~---G~~di~aV~DW~q--TLSFy~LsG~~Igk~r~L~FdP---~C-isYf~NGEy~LiGGsdk~- 245 (1081)
T KOG1538|consen 179 IWSIC---WNPSSGE---GRNDILAVADWGQ--TLSFYQLSGKQIGKDRALNFDP---CC-ISYFTNGEYILLGGSDKQ- 245 (1081)
T ss_pred ceEEE---ecCCCCC---CccceEEEEeccc--eeEEEEecceeecccccCCCCc---hh-heeccCCcEEEEccCCCc-
Confidence 55543 3332210 0112555555544 677777777532 2222211 11 124578998777766543
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCC-CeEEEEEcCCcCEEEEEeeCC
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSL 486 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~ 486 (776)
.++|-.+ |- .+-.+-..+ -++++.+-|++++++..+...
T Consensus 246 --L~~fTR~----Gv----rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 246 --LSLFTRD----GV----RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred --eEEEeec----Ce----EEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 6776543 21 122222222 367889999999999887653
No 267
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.1e-05 Score=75.07 Aligned_cols=251 Identities=13% Similarity=0.108 Sum_probs=145.3
Q ss_pred ccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 172 VIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
+....||+-|..||..- ++.+.+||..|-.+-+..... ...+..+.||+||++|+..+.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-----------------~~pi~sl~WS~dgr~LltsS~D-- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-----------------VRPITSLCWSRDGRKLLTSSRD-- 86 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-----------------ccceeEEEecCCCCEeeeecCC--
Confidence 56789999999999975 568999999875543322211 1125588999999999987754
Q ss_pred CCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCe--E
Q 004067 251 EIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNI--L 327 (776)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~ 327 (776)
..+.+||+-.|.. +++.+ ...+....|.|-.+ .
T Consensus 87 ----------------------------------~si~lwDl~~gs~l~rirf----------~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 87 ----------------------------------WSIKLWDLLKGSPLKRIRF----------DSPVWGAQWHPRKRNKC 122 (405)
T ss_pred ----------------------------------ceeEEEeccCCCceeEEEc----------cCccceeeeccccCCeE
Confidence 4578999877763 34433 34567788988543 3
Q ss_pred EEEEEeecCceEEEEEEECCCCceEEEEEeccCc--eeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee
Q 004067 328 TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS--WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 405 (776)
Q Consensus 328 l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~ 405 (776)
++...+.. -++.+...+..+.|..+.+.. .+.....|.+ .+.++++.+.-| .|.+++.++-+.
T Consensus 123 va~~~~~s-----p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr--------~g~yIitGtsKG--kllv~~a~t~e~ 187 (405)
T KOG1273|consen 123 VATIMEES-----PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR--------RGKYIITGTSKG--KLLVYDAETLEC 187 (405)
T ss_pred EEEEecCC-----cEEEEecCCceeeccCCCccccccccccccccC--------CCCEEEEecCcc--eEEEEecchhee
Confidence 43333211 233344444555554433221 1111111211 234666666666 666777766543
Q ss_pred e---ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE-eCCCCC--Cc--cccceeecCCCCeEEEEEcCCcC
Q 004067 406 G---PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK-LYPDWN--HT--LEAPVKLTNGKGKHVAVLDHNMR 477 (776)
Q Consensus 406 ~---~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~-~~~~g~--~~--~~~~~~l~~~~~~~~~~~spdg~ 477 (776)
. ++|. -..+.+.. ++..|+.+++..+.+- +..|.+. +..-|. +. ..+.+.+-+.......-||.||.
T Consensus 188 vas~rits-~~~IK~I~-~s~~g~~liiNtsDRv---IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 188 VASFRITS-VQAIKQII-VSRKGRFLIINTSDRV---IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred eeeeeech-heeeeEEE-EeccCcEEEEecCCce---EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 2 2332 12234444 8889998888876532 4555554 211111 00 01112222333344578999999
Q ss_pred EEEEEeeCCCCCCEEEEEEcCCCceeEeecc
Q 004067 478 NFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 508 (776)
Q Consensus 478 ~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 508 (776)
+++-.. .....+|+|....|..++.|..
T Consensus 263 Yv~a~s---~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 263 YVCAGS---ARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred EEEecc---ccceeEEEEecCCcceeeeecC
Confidence 877665 3345799999999998777654
No 268
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.57 E-value=2e-06 Score=84.68 Aligned_cols=264 Identities=12% Similarity=0.051 Sum_probs=166.1
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~ 202 (776)
.+|..+.|.| +|++|+.. ..+.+-+|+..+-.-+..+..++. .++.+.||++|.+++....+ -|-+|++.-..+
T Consensus 97 c~V~~v~WtP---eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 97 CPVNVVRWTP---EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-PVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cceeeEEEcC---CCceeEeecccccEEEecCceeeHHHHhhhhcc-cceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 4688999999 99999987 567788888765443313334444 48899999999987766543 356666654444
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+.+-.... .-++.++|||...+.+..+.|
T Consensus 173 k~~~ahh~-----------------eaIRdlafSpnDskF~t~SdD---------------------------------- 201 (464)
T KOG0284|consen 173 KIIQAHHA-----------------EAIRDLAFSPNDSKFLTCSDD---------------------------------- 201 (464)
T ss_pred HHhhHhhh-----------------hhhheeccCCCCceeEEecCC----------------------------------
Confidence 33211110 015678899977666655543
Q ss_pred CeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EEEEeccC
Q 004067 283 VKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELD 360 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~ 360 (776)
..|.+||..-.+. ..| .++...+..+.|.|.-..|+..+ ++.-+.+||+.+|..- .+..+...
T Consensus 202 --g~ikiWdf~~~kee~vL---------~GHgwdVksvdWHP~kgLiasgs----kDnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 202 --GTIKIWDFRMPKEERVL---------RGHGWDVKSVDWHPTKGLIASGS----KDNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred --CeEEEEeccCCchhhee---------ccCCCCcceeccCCccceeEEcc----CCceeEeecCCCcchhhhhhhccce
Confidence 3578898875543 444 67788899999999765555544 3447999999998753 23333322
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
.- .-.|.+. +.++.+..++. .+.++|...- +...+-.+...+.... |+|=..-|+.+...++.
T Consensus 267 Vl---~~~f~~n--------~N~Llt~skD~--~~kv~DiR~mkEl~~~r~Hkkdv~~~~-WhP~~~~lftsgg~Dgs-- 330 (464)
T KOG0284|consen 267 VL---AVKFNPN--------GNWLLTGSKDQ--SCKVFDIRTMKELFTYRGHKKDVTSLT-WHPLNESLFTSGGSDGS-- 330 (464)
T ss_pred EE---EEEEcCC--------CCeeEEccCCc--eEEEEehhHhHHHHHhhcchhhheeec-cccccccceeeccCCCc--
Confidence 11 1123332 23555555655 7888887743 3444444555666654 89988888888887775
Q ss_pred eeEEEEEeCCCCCCccccceeecC--CCCeEEEEEcCCcCEEEE
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVD 481 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~--~~~~~~~~~spdg~~l~~ 481 (776)
+..|.+.+.. ++..+.. ...+.++++.|=|-.|+.
T Consensus 331 vvh~~v~~~~-------p~~~i~~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 331 VVHWVVGLEE-------PLGEIPPAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred eEEEeccccc-------cccCCCcccccceeeeeccccceeEee
Confidence 6667776411 2222221 124778899999965554
No 269
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.57 E-value=1e-07 Score=91.74 Aligned_cols=183 Identities=18% Similarity=0.212 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCc
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 603 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~ 603 (776)
-++..+.+.||.++...+..-.....+ ....+||++-|..+..++. ....-++.||.|+..+.+|+++|.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~-ngq~LvIC~EGNAGFYEvG---------~m~tP~~lgYsvLGwNhPGFagST 283 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSG-NGQDLVICFEGNAGFYEVG---------VMNTPAQLGYSVLGWNHPGFAGST 283 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCC-CCceEEEEecCCccceEee---------eecChHHhCceeeccCCCCccccC
Confidence 567788888998887777764322122 3346888888865543321 123346789999999999998774
Q ss_pred -hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccc
Q 004067 604 -LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 682 (776)
Q Consensus 604 -~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~ 682 (776)
.++. ..+...+.+++++.+..-....+.|+++|||.||+-++++|..+|+ ++++|+-+.+-|........
T Consensus 284 G~P~p--------~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~r 354 (517)
T KOG1553|consen 284 GLPYP--------VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFR 354 (517)
T ss_pred CCCCc--------ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhh
Confidence 3222 2334556677788887655577899999999999999999999999 48999887776643221110
Q ss_pred ccccc-CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccC
Q 004067 683 TEKYM-GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVH 725 (776)
Q Consensus 683 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~ 725 (776)
...++ +.-......+...+....+.+.+.|+++|.-.+|+++.
T Consensus 355 MP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 355 MPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred chHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 00000 00000001112223345567778899999988887764
No 270
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=0.00045 Score=73.08 Aligned_cols=205 Identities=14% Similarity=0.122 Sum_probs=132.5
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.++++|.+.+.||-.+. + ++|-+|++..+-- ..+...++ ..+.+..|++
T Consensus 29 ~slA~s~kS~~lAvsRt-~----g~IEiwN~~~~w~~~~vi~g~~d-----------------------rsIE~L~W~e- 79 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRT-D----GNIEIWNLSNNWFLEPVIHGPED-----------------------RSIESLAWAE- 79 (691)
T ss_pred EEEEEeccCCceeeecc-C----CcEEEEccCCCceeeEEEecCCC-----------------------CceeeEEEcc-
Confidence 68899999999985544 2 4689999887542 33333222 4678899997
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCce
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
.|+.+-...++.|--||+.+++.+..+....+ .+..++.+|-++.++...+ +-|+.++...+.++--..-..
T Consensus 80 --~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r---- 152 (691)
T KOG2048|consen 80 --GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR---- 152 (691)
T ss_pred --CCeEEeecCCceEEEEecccCceeEEecCCCc-ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc----
Confidence 66655566889999999999988744444333 4788888999988888754 456666665554432211111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+.+|+..++|+|+|.+|+-.+.| ..|.+||..+
T Consensus 153 -----------q~sRvLslsw~~~~~~i~~Gs~D------------------------------------g~Iriwd~~~ 185 (691)
T KOG2048|consen 153 -----------QKSRVLSLSWNPTGTKIAGGSID------------------------------------GVIRIWDVKS 185 (691)
T ss_pred -----------ccceEEEEEecCCccEEEecccC------------------------------------ceEEEEEcCC
Confidence 12346689999999999876643 4578899888
Q ss_pred CceEEEEcccCCCCCCC-CcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 295 GPVSWMDLQCGGTDQNY-DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
+....+-.-.-+ ++.. ....+..+.+-.|+. |+... ..+.+-.||...|..
T Consensus 186 ~~t~~~~~~~~d-~l~k~~~~iVWSv~~Lrd~t-I~sgD----S~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 186 GQTLHIITMQLD-RLSKREPTIVWSVLFLRDST-IASGD----SAGTVTFWDSIFGTL 237 (691)
T ss_pred CceEEEeeeccc-ccccCCceEEEEEEEeecCc-EEEec----CCceEEEEcccCcch
Confidence 765442110000 1122 344567777777774 44332 234577888877754
No 271
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.53 E-value=4.5e-07 Score=101.15 Aligned_cols=100 Identities=17% Similarity=0.088 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh---------hh-hhhc---------
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE---------AS-IKHN--------- 613 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~---------~~-~~~~--------- 613 (776)
..|+|+++||..+... .|..++..|+++||.|+++|+||||.+..... .. .+.+
T Consensus 448 g~P~VVllHG~~g~~~-------~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRD 520 (792)
T TIGR03502 448 GWPVVIYQHGITGAKE-------NALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARD 520 (792)
T ss_pred CCcEEEEeCCCCCCHH-------HHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceecccccccccc
Confidence 4689999999766543 34556888999999999999999998843200 00 0000
Q ss_pred cCCccHHHHHHHHHHHH------Hc----CCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 614 CGRIDAEDQLTGAEWLI------KQ----GLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~------~~----~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
--...+.|+......+. +. ...+..++.++||||||.+++.++...
T Consensus 521 n~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 521 NLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 01223566766666665 11 124567999999999999999999853
No 272
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.53 E-value=1.4e-06 Score=87.72 Aligned_cols=181 Identities=10% Similarity=0.038 Sum_probs=123.9
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
++..++|||+.|.. |....+|-+||++...++.-.. ++ ..+....+...||
T Consensus 469 RSckL~pdgrtLiv-----GGeastlsiWDLAapTprikae----------lt-----------ssapaCyALa~sp--- 519 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAE----------LT-----------SSAPACYALAISP--- 519 (705)
T ss_pred eeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhh----------cC-----------CcchhhhhhhcCC---
Confidence 88999999999974 2234689999998776532111 00 1123566778899
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCce
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
|.+ ++|. .+++|-+||+.....++++.....+ +..+.+|+||.+|---. ++.+.-||+.+|...+-......
T Consensus 520 Dak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ--- 594 (705)
T KOG0639|consen 520 DAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ--- 594 (705)
T ss_pred ccc-eeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh---
Confidence 887 5554 8899999999998877677666554 88999999999976544 45688999987754322111110
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
+.++.+.|.|.+|+..-.+ ..+.|....+
T Consensus 595 ---------------IfSLg~cP~~dWlavGMen------------------------------------s~vevlh~sk 623 (705)
T KOG0639|consen 595 ---------------IFSLGYCPTGDWLAVGMEN------------------------------------SNVEVLHTSK 623 (705)
T ss_pred ---------------heecccCCCccceeeeccc------------------------------------CcEEEEecCC
Confidence 4456689999999976532 2245555555
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.+...+ ..++.-+-.+.|++-||+++.+.
T Consensus 624 p~kyql---------hlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 624 PEKYQL---------HLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ccceee---------cccccEEEEEEecccCceeeecC
Confidence 555555 34566788899999999877553
No 273
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=2.7e-05 Score=75.84 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred CCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCC--
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLIN-- 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g-- 200 (776)
..+.++.|.+ ||..++-+ .+..|.+||.+++..+ +|.....+......|||||..|.-.+-..+|.+--++.
T Consensus 196 ~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~-pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w 271 (445)
T KOG2139|consen 196 NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKI-PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW 271 (445)
T ss_pred ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCcc-cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc
Confidence 4578999999 99999987 4567999999999998 77633333477899999999876665444433321111
Q ss_pred -ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEec
Q 004067 201 -EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 201 -~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
..+.+...+ ++....|||+|+.|+|....
T Consensus 272 t~erw~lgsg-------------------rvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 272 TKERWILGSG-------------------RVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred eecceeccCC-------------------ceeeeeecCCCCEEEEEEcC
Confidence 111221111 24456799999999998753
No 274
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.51 E-value=4.3e-06 Score=75.73 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=112.2
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 635 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~i 635 (776)
++|++-|-++ |..--..++..|+++|+.|+.+|-+-+-.+.+ -......|+.+.+++..++.
T Consensus 4 ~~v~~SGDgG-------w~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~r---------tP~~~a~Dl~~~i~~y~~~w-- 65 (192)
T PF06057_consen 4 LAVFFSGDGG-------WRDLDKQIAEALAKQGVPVVGVDSLRYFWSER---------TPEQTAADLARIIRHYRARW-- 65 (192)
T ss_pred EEEEEeCCCC-------chhhhHHHHHHHHHCCCeEEEechHHHHhhhC---------CHHHHHHHHHHHHHHHHHHh--
Confidence 5677777433 32222345889999999999999652222111 11233778999999888875
Q ss_pred CCCcEEEEeechHHHHHHHHHhhCCC----ceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC-
Q 004067 636 KVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK- 710 (776)
Q Consensus 636 d~~~i~l~G~S~GG~~a~~~a~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 710 (776)
...++.|+|+|+|+-+.-.+..+-|. .++.+++++|..... +..... .+++...... ...+...+.++.
T Consensus 66 ~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~d-Feihv~-~wlg~~~~~~----~~~~~pei~~l~~ 139 (192)
T PF06057_consen 66 GRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTAD-FEIHVS-GWLGMGGDDA----AYPVIPEIAKLPP 139 (192)
T ss_pred CCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcce-EEEEhh-hhcCCCCCcc----cCCchHHHHhCCC
Confidence 45699999999999888888776654 567777777654321 111111 1122222111 123455566776
Q ss_pred CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 711 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 711 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
.|+++|+|.++.-.... .+. ...++.+..|| ||.| .++...+.+.|++-+++
T Consensus 140 ~~v~CiyG~~E~d~~cp-------~l~--~~~~~~i~lpG-gHHf--d~dy~~La~~Il~~l~~ 191 (192)
T PF06057_consen 140 APVQCIYGEDEDDSLCP-------SLR--QPGVEVIALPG-GHHF--DGDYDALAKRILDALKA 191 (192)
T ss_pred CeEEEEEcCCCCCCcCc-------ccc--CCCcEEEEcCC-CcCC--CCCHHHHHHHHHHHHhc
Confidence 49999999887542211 121 35678999998 5655 34566666777666543
No 275
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.51 E-value=4.2e-06 Score=77.06 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=129.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+..++||-|.++|.. |....-|.++|++..+. ..+ +.+..+|...-|--
T Consensus 103 vk~~af~~ds~~llt-----gg~ekllrvfdln~p~App~E~------------------------~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLT-----GGQEKLLRVFDLNRPKAPPKEI------------------------SGHTGGIRTVLWCH 153 (334)
T ss_pred eeeEEecccchhhhc-----cchHHHhhhhhccCCCCCchhh------------------------cCCCCcceeEEEec
Confidence 578899999999873 32223455556554332 111 12346788888876
Q ss_pred cCCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 135 TSSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 135 ~~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
..+.|+. +.++++.+||..++..+..|.... .+.....|+||+.|...-..-|-.|+.++=.... +-.
T Consensus 154 ---eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK--s~k---- 222 (334)
T KOG0278|consen 154 ---EDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK--SYK---- 222 (334)
T ss_pred ---cCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEecCceeEEecccccccee--ecc----
Confidence 5566665 578899999999998884554332 3788999999998877766778888876533211 111
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..+. +.+.+.+|+...++... ....+|.||..
T Consensus 223 ~P~n------------V~SASL~P~k~~fVaGg------------------------------------ed~~~~kfDy~ 254 (334)
T KOG0278|consen 223 MPCN------------VESASLHPKKEFFVAGG------------------------------------EDFKVYKFDYN 254 (334)
T ss_pred Cccc------------cccccccCCCceEEecC------------------------------------cceEEEEEecc
Confidence 1111 44667889874333211 11567899999
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
+|+....-. .++.+.+-.++|||||...+..+ .++.|.+|...-++..
T Consensus 255 TgeEi~~~n-------kgh~gpVhcVrFSPdGE~yAsGS----EDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 TGEEIGSYN-------KGHFGPVHCVRFSPDGELYASGS----EDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeecc-------cCCCCceEEEEECCCCceeeccC----CCceEEEEEecCCCch
Confidence 988765522 46677889999999998766555 5677888887665543
No 276
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.50 E-value=0.00025 Score=80.28 Aligned_cols=310 Identities=17% Similarity=0.165 Sum_probs=166.2
Q ss_pred cChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCC-C---CcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHH
Q 004067 41 FSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSP-D---HSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLR 116 (776)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~-~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~ 116 (776)
+..+++...... ..+..+|+|..++|+... + ......+|+.+... .+.++.
T Consensus 4 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~------------------ 58 (620)
T COG1506 4 FDAEDLLALARV-----SDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTF------------------ 58 (620)
T ss_pred CCHHHHHhhhcc-----cCcccCCCCceeEEeeccccccccccccceEEEeccc--cccccc------------------
Confidence 445666655555 888999999999999874 1 12345788876554 222221
Q ss_pred HHHHHHhcCCeeeEEEeecCCCceEEEEeC-----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--
Q 004067 117 RERLRERGLGVTRYEWVKTSSKKKIIMVPL-----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-- 189 (776)
Q Consensus 117 ~~~~~~~~~~~~~~~~sp~~~dg~~l~~~~-----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-- 189 (776)
..++..+.|+| ||+.+++.. ..++|+++.. + .. ..+. ..+..+.|+|+|+.+++...
T Consensus 59 -------~~~~~~~~~sp---dg~~~~~~~~~~~~~~~l~l~~~~-g-~~-~~~~---~~v~~~~~~~~g~~~~~~~~~~ 122 (620)
T COG1506 59 -------GGGVSELRWSP---DGSVLAFVSTDGGRVAQLYLVDVG-G-LI-TKTA---FGVSDARWSPDGDRIAFLTAEG 122 (620)
T ss_pred -------CCcccccccCC---CCCEEEEEeccCCCcceEEEEecC-C-ce-eeee---cccccceeCCCCCeEEEEeccc
Confidence 24677889999 999999985 3568888887 4 22 2221 13678999999999999431
Q ss_pred -----Cc-------EEEE-ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEE
Q 004067 190 -----CE-------LHVL-NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFR 256 (776)
Q Consensus 190 -----~~-------l~~~-~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 256 (776)
+. +.++ +..+++...+..-..... .. ........+..+.+.+|++.++.........+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 193 (620)
T COG1506 123 ASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESK----LI--KLGLGNLDVVSFATDGDGRLVASIRLDDDADP--- 193 (620)
T ss_pred ccccCCceeeeecccceeecCCCCcccceEEEccCcc----cc--cccCCCCceeeeeeCCCCceeEEeeeccccCC---
Confidence 11 1122 222212222211110000 00 00000111334455566666665554332111
Q ss_pred EeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecC
Q 004067 257 IMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ 336 (776)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 336 (776)
......++...++....+ ......+..+.|.+||+.+++......
T Consensus 194 --------------------------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~gk~~~~~~~~~~ 238 (620)
T COG1506 194 --------------------------WVTNLYVLIEGNGELESL---------TPGEGSISKLAFDADGKSIALLGTESD 238 (620)
T ss_pred --------------------------ceEeeEEEecCCCceEEE---------cCCCceeeeeeeCCCCCeeEEeccCCc
Confidence 012234444456666665 344456888999999996666654432
Q ss_pred ----ceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc-CCceEEEEEeCCCceeeccccC
Q 004067 337 ----TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITEG 411 (776)
Q Consensus 337 ----~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~g~~~~~lt~~ 411 (776)
....+++++.+.++........+..+. +.... ...+++.++|.+.. .|...++.+...++....+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 311 (620)
T COG1506 239 RGLAEGDFILLLDGELGEVDGDLSSGDDTRG-----AWAVE--GGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGD 311 (620)
T ss_pred cCccccceEEEEeccccccceeeccCCcccC-----cHHhc--cccCCCcEEEEEecCCCceEEEEEeccCCceeeecCC
Confidence 233566666455554442111110000 00111 12456667777765 6766777776545444444443
Q ss_pred CeEEEEEEeecCCCcEEEEEEcc-CCCceeeEEEEEe
Q 004067 412 DWMVEQIVGVNEASGQVYFTGTL-DGPLESHLYCAKL 447 (776)
Q Consensus 412 ~~~~~~~~~~s~dg~~i~~~~~~-~~~~~~~l~~~~~ 447 (776)
...+.. |+.+++.+++..+. ..| .++|..+.
T Consensus 312 ~~~v~~---f~~~~~~~~~~~s~~~~p--~~i~~~~~ 343 (620)
T COG1506 312 DGGVPG---FDVDGRKLALAYSSPTEP--PEIYLYDR 343 (620)
T ss_pred CceEEE---EeeCCCEEEEEecCCCCc--cceEEEcC
Confidence 344443 45588888888665 335 46666653
No 277
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=3.4e-05 Score=78.10 Aligned_cols=270 Identities=11% Similarity=0.012 Sum_probs=165.5
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR 203 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~ 203 (776)
..+.+..|||..|+ .++++..-.+-+++..+......+...... +....|-.||+.+|-.-. +.+-++|..+-.+.
T Consensus 27 ~~vssl~fsp~~P~--d~aVt~S~rvqly~~~~~~~~k~~srFk~~-v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPY--DFAVTSSVRVQLYSSVTRSVRKTFSRFKDV-VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred CcceeEecCCCCCC--ceEEecccEEEEEecchhhhhhhHHhhccc-eeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 46788899995553 366666667777787776666335445543 778899999998776643 56778885543222
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
+...... .++....|+|+++.++....|+
T Consensus 104 R~~~ah~-----------------apv~~~~f~~~d~t~l~s~sDd---------------------------------- 132 (487)
T KOG0310|consen 104 RQLYAHQ-----------------APVHVTKFSPQDNTMLVSGSDD---------------------------------- 132 (487)
T ss_pred HHHhhcc-----------------CceeEEEecccCCeEEEecCCC----------------------------------
Confidence 2111111 1144567999988777654433
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE-EEeccCce
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI-LVEELDSW 362 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~ 362 (776)
..+.+||+++... ++++ .++..++...+|+|-...++++. .-+..|.+||+.+...+.+ .++..+.=
T Consensus 133 -~v~k~~d~s~a~v-~~~l-------~~htDYVR~g~~~~~~~hivvtG---sYDg~vrl~DtR~~~~~v~elnhg~pVe 200 (487)
T KOG0310|consen 133 -KVVKYWDLSTAYV-QAEL-------SGHTDYVRCGDISPANDHIVVTG---SYDGKVRLWDTRSLTSRVVELNHGCPVE 200 (487)
T ss_pred -ceEEEEEcCCcEE-EEEe-------cCCcceeEeeccccCCCeEEEec---CCCceEEEEEeccCCceeEEecCCCcee
Confidence 3367888888876 5544 67889999999999876555542 2567899999987643222 22222211
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC-cee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCcee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 440 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~ 440 (776)
.. .|-| +++++.++ |.+.+.+||+.+ ++. .....+.-.|+.+. +..++..++-.+-+. ..
T Consensus 201 ~v---l~lp--------sgs~iasA---gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~-l~s~~~rLlS~sLD~---~V 262 (487)
T KOG0310|consen 201 SV---LALP--------SGSLIASA---GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLR-LASDSTRLLSGSLDR---HV 262 (487)
T ss_pred eE---EEcC--------CCCEEEEc---CCCeEEEEEecCCceehhhhhcccceEEEEE-eecCCceEeeccccc---ce
Confidence 00 1112 23444433 446899999874 432 23333566677766 566776655444332 25
Q ss_pred eEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeC
Q 004067 441 HLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 441 ~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 485 (776)
.+|.+.- - .....+.-...+.+.++|||+..++...++
T Consensus 263 KVfd~t~---~----Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 263 KVFDTTN---Y----KVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEEEccc---e----EEEEeeecccceeeEEecCCCceEEEeccc
Confidence 6666321 1 133444555567889999999999988765
No 278
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=3.1e-05 Score=83.69 Aligned_cols=197 Identities=11% Similarity=0.057 Sum_probs=107.9
Q ss_pred CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCC
Q 004067 228 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT 307 (776)
Q Consensus 228 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 307 (776)
+-+..++||-++ .|+-.+.|+ .+.+|++...+.-.+
T Consensus 370 ~DILDlSWSKn~-fLLSSSMDK------------------------------------TVRLWh~~~~~CL~~------- 405 (712)
T KOG0283|consen 370 ADILDLSWSKNN-FLLSSSMDK------------------------------------TVRLWHPGRKECLKV------- 405 (712)
T ss_pred hhheecccccCC-eeEeccccc------------------------------------cEEeecCCCcceeeE-------
Confidence 335678998755 677776653 378999998887766
Q ss_pred CCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEE
Q 004067 308 DQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWA 386 (776)
Q Consensus 308 ~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (776)
+.|..+++.++|.| |.++++..+ -+..+.+|++-..++..-++-.+ +.-.-.|.|. |+.+++
T Consensus 406 --F~HndfVTcVaFnPvDDryFiSGS----LD~KvRiWsI~d~~Vv~W~Dl~~---lITAvcy~Pd--------Gk~avI 468 (712)
T KOG0283|consen 406 --FSHNDFVTCVAFNPVDDRYFISGS----LDGKVRLWSISDKKVVDWNDLRD---LITAVCYSPD--------GKGAVI 468 (712)
T ss_pred --EecCCeeEEEEecccCCCcEeecc----cccceEEeecCcCeeEeehhhhh---hheeEEeccC--------CceEEE
Confidence 77899999999999 455544443 35568888875543322111110 0111234453 334444
Q ss_pred eccCCceEEEEEeCCCceee---ccccC------CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccc
Q 004067 387 SEKTGFRHLYLHDINGTCLG---PITEG------DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 457 (776)
Q Consensus 387 s~~~g~~~l~~~~~~g~~~~---~lt~~------~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~ 457 (776)
..-.| ..+.++..+-+.. +|-.. ...+.++..+.-+-..|++++++.. +.||...- ...+..
T Consensus 469 Gt~~G--~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr---IRI~d~~~----~~lv~K 539 (712)
T KOG0283|consen 469 GTFNG--YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR---IRIYDGRD----KDLVHK 539 (712)
T ss_pred EEecc--EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCc---eEEEeccc----hhhhhh
Confidence 44555 3333333332211 11000 1145555534344456788776532 45554421 100011
Q ss_pred ceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 458 PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 458 ~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
.+-..+......++|+.||++|+..+.. ..||+|+..
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~IVs~seD----s~VYiW~~~ 576 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKHIVSASED----SWVYIWKND 576 (712)
T ss_pred hcccccCCcceeeeEccCCCEEEEeecC----ceEEEEeCC
Confidence 2222223344577999999999999843 368888863
No 279
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.46 E-value=4.4e-05 Score=76.77 Aligned_cols=280 Identities=13% Similarity=0.077 Sum_probs=153.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccce-ecCC----------------CCCCCccCceeCCCCCEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPEL-KLSS----------------SSCSPVIDPHLSSDGTMIAF 186 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~-~l~~----------------~~~~~~~~~~~SpDg~~la~ 186 (776)
..+..+..+| |+++++-. .++.|-.|++.+|+... .+.. .....+...+.||||++||+
T Consensus 143 ~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 143 LSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred CcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4677889999 99988865 67788888888876330 0110 01112445789999999999
Q ss_pred EECCc-EEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCC
Q 004067 187 VRDCE-LHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSV 265 (776)
Q Consensus 187 ~~~~~-l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (776)
...++ +.+|+.++.+..+.+....+ .+..++|--.-..|+..+.|
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~-----------------~V~~L~fr~gt~~lys~s~D----------------- 265 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRG-----------------AVSSLAFRKGTSELYSASAD----------------- 265 (479)
T ss_pred cCCCceEEEecCcccchhhccccccc-----------------ceeeeeeecCccceeeeecC-----------------
Confidence 87654 66999999988776443321 13344454333344444333
Q ss_pred CCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 266 GSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
..+.+|+++.-..... +.+++..+..+.-+.-++ ++.+.. .+..+.+|+
T Consensus 266 -------------------rsvkvw~~~~~s~vet--------lyGHqd~v~~IdaL~reR-~vtVGg---rDrT~rlwK 314 (479)
T KOG0299|consen 266 -------------------RSVKVWSIDQLSYVET--------LYGHQDGVLGIDALSRER-CVTVGG---RDRTVRLWK 314 (479)
T ss_pred -------------------CceEEEehhHhHHHHH--------HhCCccceeeechhcccc-eEEecc---ccceeEEEe
Confidence 3366777654332111 256666666665554454 333322 244566676
Q ss_pred CCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec---cccC---C-------
Q 004067 346 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP---ITEG---D------- 412 (776)
Q Consensus 346 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~---lt~~---~------- 412 (776)
+ ..+.+.++....... +- ++.-++.-+.+...+| .|++|++..+++-. +..+ .
T Consensus 315 i-~eesqlifrg~~~si-dc----------v~~In~~HfvsGSdnG--~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 315 I-PEESQLIFRGGEGSI-DC----------VAFINDEHFVSGSDNG--SIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred c-cccceeeeeCCCCCe-ee----------EEEecccceeeccCCc--eEEEeeecccCceeEeeccccccCCccccccc
Confidence 6 334455554332100 00 0111122223333456 88888876665322 2111 1
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
+-+.++. .-+... ++.+++.++- +.||.+. +|-.....+..+.-.+.++.+.|+++|++++....-...-+..
T Consensus 381 ~Witsla-~i~~sd-L~asGS~~G~--vrLW~i~---~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 381 FWITSLA-VIPGSD-LLASGSWSGC--VRLWKIE---DGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cceeeeE-ecccCc-eEEecCCCCc--eEEEEec---CCccccceeeecccccEEEEEEEccCCCEEEEeccccccccee
Confidence 1223332 344444 6666666654 8999998 4432112233333334577889999999888776544444444
Q ss_pred E
Q 004067 493 L 493 (776)
Q Consensus 493 ~ 493 (776)
+
T Consensus 454 ~ 454 (479)
T KOG0299|consen 454 W 454 (479)
T ss_pred e
Confidence 4
No 280
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.2e-05 Score=78.16 Aligned_cols=196 Identities=14% Similarity=0.150 Sum_probs=118.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.+.++|.+ ..++|..... ...|.+++.....+..|.... -+++..++|-|.|
T Consensus 101 lr~~aWhq--H~~~fava~n---ddvVriy~ksst~pt~Lks~s-----------------------QrnvtclawRPls 152 (445)
T KOG2139|consen 101 LRGVAWHQ--HIIAFAVATN---DDVVRIYDKSSTCPTKLKSVS-----------------------QRNVTCLAWRPLS 152 (445)
T ss_pred eeeEeech--hhhhhhhhcc---CcEEEEeccCCCCCceecchh-----------------------hcceeEEEeccCC
Confidence 46778888 5556554322 246888887775555555421 2578999999932
Q ss_pred CCceEEEEeCCCcEEEEeCCCC-ccc----------e-ecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCCCce
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCS-KPE----------L-KLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLINEQ 202 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~-~~~----------~-~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~g~~ 202 (776)
- +-|++.-...|-+|..+.. ... . .+.......+..++|.+||..++-.+- ..|.+|++++|..
T Consensus 153 a--selavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 A--SELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred c--ceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence 2 3455665566666655421 111 0 111222234778999999999888764 4699999999998
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
..|...+.+ | +.-+.|||||..|+-.+.|.
T Consensus 231 ~pL~~~glg-----g------------~slLkwSPdgd~lfaAt~da--------------------------------- 260 (445)
T KOG2139|consen 231 IPLIPKGLG-----G------------FSLLKWSPDGDVLFAATCDA--------------------------------- 260 (445)
T ss_pred ccccccCCC-----c------------eeeEEEcCCCCEEEEecccc---------------------------------
Confidence 887632221 1 44678999999887666432
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
...+|.......+.-- .-..+++....|||+|+.|+|+.. +...||.+..
T Consensus 261 ---vfrlw~e~q~wt~erw--------~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl~f 310 (445)
T KOG2139|consen 261 ---VFRLWQENQSWTKERW--------ILGSGRVQTACWSPCGSFLLFACS---GSPRLYSLTF 310 (445)
T ss_pred ---eeeeehhcccceecce--------eccCCceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence 1244432222111100 112337888999999998887764 3344665543
No 281
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.45 E-value=3.3e-06 Score=84.15 Aligned_cols=192 Identities=15% Similarity=0.100 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHH---hCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHH-HH
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE-WL 629 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~-~l 629 (776)
.++++++.|.||.... +..+...|. ...+.|+++.+.|+.......... .....+..+|+++-.. .+
T Consensus 2 ~~li~~IPGNPGlv~f-------Y~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i 72 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEF-------YEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFI 72 (266)
T ss_pred cEEEEEECCCCChHHH-------HHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHH
Confidence 3789999999987652 222344444 358999999999986554321000 1223345666655433 33
Q ss_pred HHc---CCCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcCCCCCccc-----------------------c--
Q 004067 630 IKQ---GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDG-----------------------Y-- 678 (776)
Q Consensus 630 ~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~~~~~~~~-----------------------~-- 678 (776)
.+. ......+++++|||.|+++++.++-+.+ ..+..++..-|...... +
T Consensus 73 ~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~~~~~~~~~~ 152 (266)
T PF10230_consen 73 KELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPPLVWLASFLS 152 (266)
T ss_pred HHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccHHHHHHHHHH
Confidence 322 1114578999999999999999999988 56777777766542100 0
Q ss_pred ------c----ccccccccCCCCCC---------------------ccchh---cCChhhhhccC---CCcEEEEecCCC
Q 004067 679 ------D----TFYTEKYMGLPSED---------------------PVGYE---YSSVMHHVHKM---KGKLLLVHGMID 721 (776)
Q Consensus 679 ------~----~~~~~~~~~~~~~~---------------------~~~~~---~~~~~~~~~~i---~~P~lii~G~~D 721 (776)
. ......+++.+... .+.+. +.+........ ..++.+..|.+|
T Consensus 153 ~l~~~lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~kl~f~fg~~D 232 (266)
T PF10230_consen 153 FLLSLLPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDKLWFYFGQND 232 (266)
T ss_pred HHHHHCCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCEEEEEEeCCC
Confidence 0 00001112222110 00010 00101111222 468999999999
Q ss_pred CccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 722 ENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 722 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
..||.+...++.+.+.....++.+.. ++..|.|
T Consensus 233 ~Wvp~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 233 HWVPNETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred CCCCHHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 99999999999888854444555544 7778876
No 282
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.44 E-value=2.6e-05 Score=76.69 Aligned_cols=133 Identities=18% Similarity=0.143 Sum_probs=87.6
Q ss_pred hhhccCCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEE
Q 004067 515 RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL 594 (776)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 594 (776)
.+........+++.+.. |+..+.+....-++. ++-.=||+.-|.++..+...........+.....+.|.+|+.+
T Consensus 103 ~~~~~~~~~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f 177 (365)
T PF05677_consen 103 WFSDDEVSSVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF 177 (365)
T ss_pred hhccccccceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence 34444556788888987 898888777663332 2334567666644332210000001122345566789999999
Q ss_pred CCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 595 DNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 595 d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
+|||.|.|..... ... .+.|..+.++||+++ ..+.+.+|++.|||+||.++..++..+
T Consensus 178 NYpGVg~S~G~~s---~~d----Lv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 178 NYPGVGSSTGPPS---RKD----LVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred CCCccccCCCCCC---HHH----HHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 9999998743221 122 277899999999975 357889999999999999998866543
No 283
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.43 E-value=0.00048 Score=64.59 Aligned_cols=284 Identities=10% Similarity=-0.005 Sum_probs=151.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
+.+....+.. +|..|+.. .+...-+|=...|+..-....+.+ .+......-|.+.++--+- +.+.+||+++|+.
T Consensus 11 RplTqiKyN~---eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 11 RPLTQIKYNR---EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred cccceEEecC---CCcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 3455667788 89876654 455444554434443324433333 2566666777887776654 4589999999987
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
......+.. +..+.|+++|..+++...+.-.
T Consensus 87 la~~k~~~~------------------Vk~~~F~~~gn~~l~~tD~~mg------------------------------- 117 (327)
T KOG0643|consen 87 LATWKTNSP------------------VKRVDFSFGGNLILASTDKQMG------------------------------- 117 (327)
T ss_pred EEEeecCCe------------------eEEEeeccCCcEEEEEehhhcC-------------------------------
Confidence 665554432 5577899999998887643211
Q ss_pred CeEEEEEEEcC-------CCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 283 VKVRLGVVSAA-------GGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 283 ~~~~l~~~d~~-------~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
....|.++|+. +.+ ..+| +-.+..+...-|+|-|+.|+... .+..|-.||+.+|....-
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI---------~t~~skit~a~Wg~l~~~ii~Gh----e~G~is~~da~~g~~~v~ 184 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKI---------PTPDSKITSALWGPLGETIIAGH----EDGSISIYDARTGKELVD 184 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEe---------cCCccceeeeeecccCCEEEEec----CCCcEEEEEcccCceeee
Confidence 01345555554 233 2333 22335677889999999887765 566799999998864322
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEc
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGT 433 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~ 433 (776)
.......-+ .+-.+++ +..+..++..+. +-.++|..+-+. +..+. +..+... +++|--.+++.-..
T Consensus 185 s~~~h~~~I-nd~q~s~--------d~T~FiT~s~Dt--takl~D~~tl~v~Kty~t-e~PvN~a-aisP~~d~VilgGG 251 (327)
T KOG0643|consen 185 SDEEHSSKI-NDLQFSR--------DRTYFITGSKDT--TAKLVDVRTLEVLKTYTT-ERPVNTA-AISPLLDHVILGGG 251 (327)
T ss_pred chhhhcccc-ccccccC--------CcceEEecccCc--cceeeeccceeeEEEeee-cccccce-ecccccceEEecCC
Confidence 211111100 0011112 223333445555 445556544322 12221 2333333 47787776665543
Q ss_pred cCCCceeeEEEEEeCC--CCCCcc--------ccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 434 LDGPLESHLYCAKLYP--DWNHTL--------EAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 434 ~~~~~~~~l~~~~~~~--~g~~~~--------~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
. +-..|-.+. .|+... .++-++..+=| +++++|+|||+. +++...-+.|.++.+
T Consensus 252 q------eA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks----YsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 252 Q------EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS----YSSGGEDGYVRLHHF 316 (327)
T ss_pred c------eeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc----cccCCCCceEEEEEe
Confidence 2 122222110 121110 12233333323 678999999984 334333345555443
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.43 E-value=9.5e-05 Score=75.46 Aligned_cols=285 Identities=10% Similarity=-0.015 Sum_probs=162.4
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---------------
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--------------- 189 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--------------- 189 (776)
..+....||| .|+.|+...-..|-+|+-.......++. ...+....|||.|++|.--++
T Consensus 33 ~p~~~~~~SP---~G~~l~~~~~~~V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 33 WPVAYVSESP---LGTYLFSEHAAGVECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cchhheeecC---cchheehhhccceEEccccchhheeeee---cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 3566778999 9999998877778887766555221222 224788999999999886652
Q ss_pred -CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 190 -CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 190 -~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
+++++||.++|.+..= ..... .....| .-+.||-|.+.+|+...
T Consensus 107 ~n~~~vwd~~sg~iv~s-f~~~~----q~~~~W---------p~~k~s~~D~y~ARvv~--------------------- 151 (561)
T COG5354 107 KNNVFVWDIASGMIVFS-FNGIS----QPYLGW---------PVLKFSIDDKYVARVVG--------------------- 151 (561)
T ss_pred cCceeEEeccCceeEee-ccccC----Cccccc---------ceeeeeecchhhhhhcc---------------------
Confidence 3699999998876432 11111 001122 14668998888877532
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe--EEEEE-EeecCceEEEEEEE
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQV-LNRSQTKLKVLKFD 345 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~l~~~-~~~~~~~~~l~~~d 345 (776)
.+|+++++ |+........ .-....+.+++|||.|. .|+++ .........+.+|.
T Consensus 152 ----------------~sl~i~e~-t~n~~~~p~~------~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 152 ----------------SSLYIHEI-TDNIEEHPFK------NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred ----------------CeEEEEec-CCccccCchh------hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 35788887 5544433221 11234688899999753 54544 33334444555555
Q ss_pred CCCCce---EEEEEeccC--ceeecccccccCCCCccccCCeEEEEe------ccC--CceEEEEEeCCCceeeccccCC
Q 004067 346 IKTGQR---KVILVEELD--SWVNLHDCFTPLDKGVTKYSGGFIWAS------EKT--GFRHLYLHDINGTCLGPITEGD 412 (776)
Q Consensus 346 ~~~g~~---~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~~--g~~~l~~~~~~g~~~~~lt~~~ 412 (776)
+-.+.. +.+.+-.+- .|.. .++.+++.. +++ |..+||+....+...+....-.
T Consensus 209 Ip~~s~l~tk~lfk~~~~qLkW~~--------------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~ 274 (561)
T COG5354 209 IPKNSVLVTKNLFKVSGVQLKWQV--------------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLK 274 (561)
T ss_pred ccCCCeeeeeeeEeecccEEEEec--------------CCceEEEEEEEeeecccceeccceEEEEeecccccceecccc
Confidence 543322 222222211 2321 123333322 222 3379999998765544432213
Q ss_pred eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEE
Q 004067 413 WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRI 492 (776)
Q Consensus 413 ~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i 492 (776)
..|-.+. |+|+++...+.+... | ..+-..++ .| .+.-....+.-.+..|||.++++++.--... -+.+
T Consensus 275 ~pVhdf~-W~p~S~~F~vi~g~~-p--a~~s~~~l--r~-----Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl-~gni 342 (561)
T COG5354 275 DPVHDFT-WEPLSSRFAVISGYM-P--ASVSVFDL--RG-----NLRFYFPEQKRNTIFFSPHERYILFAGFDNL-QGNI 342 (561)
T ss_pred ccceeee-ecccCCceeEEeccc-c--cceeeccc--cc-----ceEEecCCcccccccccCcccEEEEecCCcc-ccce
Confidence 3444554 999999877777542 3 23333333 23 2333333334457799999999888643322 2456
Q ss_pred EEEEcCC
Q 004067 493 LLCSLQD 499 (776)
Q Consensus 493 ~~~~~~~ 499 (776)
-++|..+
T Consensus 343 ~i~~~~~ 349 (561)
T COG5354 343 EIFDPAG 349 (561)
T ss_pred EEeccCC
Confidence 6667644
No 285
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.43 E-value=5.6e-06 Score=85.95 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=56.5
Q ss_pred hccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCC-CCeEEEEecCCCCC--CCCCCcHHHHHHHHHHHHHHh
Q 004067 706 VHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 706 ~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~ 775 (776)
+++|+ +|+|.+.|+.|.++++.++..+.+.+...+ .+...++.+++||. +.....+.+++..+.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56888 999999999999999999999888763333 24557777788997 355667888999999999864
No 286
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.42 E-value=6.7e-05 Score=72.96 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=161.5
Q ss_pred eeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE
Q 004067 127 VTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ 204 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~ 204 (776)
+..+.+.| -.++++.. .|..|.+||+++|+.+..|+.... .+..+++|+-..++..... .++--|||+..+..+
T Consensus 154 Vr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR 229 (460)
T KOG0285|consen 154 VRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR 229 (460)
T ss_pred EEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccCceEEEecCCCeeEEEechhhhhHH
Confidence 56788888 77877765 678899999999999866775554 3888999999998776664 468889999887654
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
--.+.-. + +..+...|--+.|+....|
T Consensus 230 ~YhGHlS-----~------------V~~L~lhPTldvl~t~grD------------------------------------ 256 (460)
T KOG0285|consen 230 HYHGHLS-----G------------VYCLDLHPTLDVLVTGGRD------------------------------------ 256 (460)
T ss_pred Hhccccc-----e------------eEEEeccccceeEEecCCc------------------------------------
Confidence 3332211 1 3345566766655544322
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc-CCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCce
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSW 362 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~ 362 (776)
..+.+||+.++...-. +.++...+..+.+-| |++ ++..+ .+..|.+||+..|+. ..++.+....-
T Consensus 257 st~RvWDiRtr~~V~~--------l~GH~~~V~~V~~~~~dpq-vit~S----~D~tvrlWDl~agkt~~tlt~hkksvr 323 (460)
T KOG0285|consen 257 STIRVWDIRTRASVHV--------LSGHTNPVASVMCQPTDPQ-VITGS----HDSTVRLWDLRAGKTMITLTHHKKSVR 323 (460)
T ss_pred ceEEEeeecccceEEE--------ecCCCCcceeEEeecCCCc-eEEec----CCceEEEeeeccCceeEeeecccceee
Confidence 4579999988754332 156777888888887 554 55544 577899999987775 45555543311
Q ss_pred eecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
.- ...++...|.|... .+|..|++-.|. ..-+..+...+..+. ...|| +++...+.+. ..
T Consensus 324 al------------~lhP~e~~fASas~--dnik~w~~p~g~f~~nlsgh~~iintl~-~nsD~--v~~~G~dng~--~~ 384 (460)
T KOG0285|consen 324 AL------------CLHPKENLFASASP--DNIKQWKLPEGEFLQNLSGHNAIINTLS-VNSDG--VLVSGGDNGS--IM 384 (460)
T ss_pred EE------------ecCCchhhhhccCC--ccceeccCCccchhhccccccceeeeee-eccCc--eEEEcCCceE--EE
Confidence 10 11123345555332 378888855444 444555555555443 44444 6777666543 45
Q ss_pred EEEEEeCCCCCCccccceee---------cCCCCeEEEEEcCCcCEEEEE
Q 004067 442 LYCAKLYPDWNHTLEAPVKL---------TNGKGKHVAVLDHNMRNFVDF 482 (776)
Q Consensus 442 l~~~~~~~~g~~~~~~~~~l---------~~~~~~~~~~~spdg~~l~~~ 482 (776)
.|+.. +|- ..+++ ..+.|+....|...|.+|+..
T Consensus 385 fwdwk---sg~----nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ 427 (460)
T KOG0285|consen 385 FWDWK---SGH----NYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG 427 (460)
T ss_pred EEecC---cCc----ccccccccccCCccccccceeEEeecccCceEEec
Confidence 55554 332 22222 223355666777777777654
No 287
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.42 E-value=1.6e-05 Score=75.60 Aligned_cols=265 Identities=14% Similarity=0.160 Sum_probs=149.3
Q ss_pred ecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCC----CceeEEeeCCCCC--ceecCCcccceecccCCcceEEE
Q 004067 163 KLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLI----NEQRQLTHGANGN--TVTHGLAEYIAQEEMDRKTGYWW 235 (776)
Q Consensus 163 ~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~----g~~~~lt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w 235 (776)
-++.+.. ..+..+|||||..+|-.+- -.|-+++++- .+.+++..+.... .....+. ...+-+..+.|
T Consensus 107 ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-----DH~devn~l~F 180 (430)
T KOG0640|consen 107 YLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-----DHVDEVNDLDF 180 (430)
T ss_pred EEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-----hccCcccceee
Confidence 4555554 3778899999998887654 3577777651 1222332221110 0000000 11223556778
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
.|-...|+..+.| ..|.++|...-..++-. ........
T Consensus 181 HPre~ILiS~srD------------------------------------~tvKlFDfsK~saKrA~------K~~qd~~~ 218 (430)
T KOG0640|consen 181 HPRETILISGSRD------------------------------------NTVKLFDFSKTSAKRAF------KVFQDTEP 218 (430)
T ss_pred cchhheEEeccCC------------------------------------CeEEEEecccHHHHHHH------HHhhccce
Confidence 8887766655433 23555665432211100 01334567
Q ss_pred EEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeec--ccccccCCCCccccCCeEEEEeccCCce
Q 004067 316 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL--HDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 316 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
+..++|.|.|.+|+... ....+.+||.++-+.-.-....+. -... .-.|++ .+++|.+...+|
T Consensus 219 vrsiSfHPsGefllvgT----dHp~~rlYdv~T~QcfvsanPd~q-ht~ai~~V~Ys~--------t~~lYvTaSkDG-- 283 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGT----DHPTLRLYDVNTYQCFVSANPDDQ-HTGAITQVRYSS--------TGSLYVTASKDG-- 283 (430)
T ss_pred eeeEeecCCCceEEEec----CCCceeEEeccceeEeeecCcccc-cccceeEEEecC--------CccEEEEeccCC--
Confidence 88899999999877665 566789999988654332221111 0000 011222 456888888999
Q ss_pred EEEEEe-CCCceeeccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC--C--
Q 004067 394 HLYLHD-INGTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK--G-- 466 (776)
Q Consensus 394 ~l~~~~-~~g~~~~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~--~-- 466 (776)
.|.+|| .++.-.+.+... ...+.+.. |+.+||+|+-++ .+.. ++||.+.. | +.++.-+..+ +
T Consensus 284 ~IklwDGVS~rCv~t~~~AH~gsevcSa~-Ftkn~kyiLsSG-~DS~--vkLWEi~t---~----R~l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGNAHGGSEVCSAV-FTKNGKYILSSG-KDST--VKLWEIST---G----RMLKEYTGAGTTGRQ 352 (430)
T ss_pred cEEeeccccHHHHHHHHhhcCCceeeeEE-EccCCeEEeecC-Ccce--eeeeeecC---C----ceEEEEecCCcccch
Confidence 889998 444445555442 45677766 999999755443 3433 78999884 3 2555555432 1
Q ss_pred --eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeE
Q 004067 467 --KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 504 (776)
Q Consensus 467 --~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~ 504 (776)
-..+.|.....++++--... .++..||..++....
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas---~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEAS---NSLCSWDARTADRVA 389 (430)
T ss_pred hhhhhhhhcCccceEEcccccc---Cceeeccccchhhhh
Confidence 12346777776666654332 357778877666433
No 288
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.42 E-value=3.5e-07 Score=103.08 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhh-hhc-c
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI-KHN-C 614 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~-~~~-~ 614 (776)
|+..||.|.... ...++||+|++|||.-...-. . .........++.++++||.++||-. -.| |.... ... .
T Consensus 109 L~LnI~~P~~~~-~~~~lPV~v~ihGG~f~~G~~-~--~~~~~~~~~~~~~~vivVt~nYRlg-~~G--fl~~~~~~~~~ 181 (535)
T PF00135_consen 109 LYLNIYTPSNAS-SNSKLPVMVWIHGGGFMFGSG-S--FPPYDGASLAASKDVIVVTINYRLG-AFG--FLSLGDLDAPS 181 (535)
T ss_dssp -EEEEEEETSSS-STTSEEEEEEE--STTTSSCT-T--SGGGHTHHHHHHHTSEEEEE----H-HHH--H-BSSSTTSHB
T ss_pred HHHhhhhccccc-cccccceEEEeecccccCCCc-c--cccccccccccCCCEEEEEeccccc-ccc--cccccccccCc
Confidence 889999998853 223799999999976433211 0 0111224567789999999999932 000 00000 000 2
Q ss_pred CCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhhC--CCceEEEEEcCCC
Q 004067 615 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPV 672 (776)
Q Consensus 615 ~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--~~~~~~~v~~~~~ 672 (776)
+..-+.|+..|++|+.++ ..-|+++|.|+|+|.||..+..++..- ..+|+.+|+.++.
T Consensus 182 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 182 GNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 344588999999999986 335999999999999999999888752 4589999998884
No 289
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.42 E-value=7.8e-06 Score=75.35 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=80.5
Q ss_pred EEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 286 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 286 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
.+.+||..+++..+ |.+ ...+..+..|+||++|..+. -..|.-||+++-.. |-.-.-+.-+
T Consensus 166 tVRLWD~rTgt~v~sL~~----------~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~--lKs~k~P~nV- 227 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEF----------NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGL--LKSYKMPCNV- 227 (334)
T ss_pred ceEEEEeccCcEEEEEec----------CCCCcceeeccCCCEEEEec-----CceeEEeccccccc--eeeccCcccc-
Confidence 47999999887544 433 34567789999999776653 33477888876332 2221112111
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc-ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI-TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 443 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l-t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~ 443 (776)
......| ...++....+++ .+|.+|-.+++..-. -++.+....-+.|||||. +|.+.+.++. +.||
T Consensus 228 ~SASL~P--------~k~~fVaGged~--~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT--irlW 294 (334)
T KOG0278|consen 228 ESASLHP--------KKEFFVAGGEDF--KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT--IRLW 294 (334)
T ss_pred ccccccC--------CCceEEecCcce--EEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce--EEEE
Confidence 1111222 223555555566 788888887765544 344433333345999998 6888888876 8999
Q ss_pred EEEe
Q 004067 444 CAKL 447 (776)
Q Consensus 444 ~~~~ 447 (776)
.+..
T Consensus 295 Qt~~ 298 (334)
T KOG0278|consen 295 QTTP 298 (334)
T ss_pred EecC
Confidence 9986
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=0.00021 Score=85.17 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=149.5
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
|..+++++++..|+..... ...|.++|.++.....+......+.....+.. .. ........+++
T Consensus 570 P~gvavd~~~g~lyVaDs~----n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~-a~---------f~~P~GIavd~-- 633 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSN----HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFED-AT---------FNRPQGLAYNA-- 633 (1057)
T ss_pred CceEEEECCCCeEEEEECC----CCeEEEEeCCCCEEEEEccCCCcCCCCCchhc-cc---------cCCCcEEEEeC--
Confidence 4678899887767654432 25799999987654444321111110011110 01 12345678888
Q ss_pred CCceEEEEe--CCCcEEEEeCCCCccceecCCC-------CC---------CCccCceeCCCCCEEEEEE--CCcEEEEe
Q 004067 137 SKKKIIMVP--LPDGIYFQDLSCSKPELKLSSS-------SC---------SPVIDPHLSSDGTMIAFVR--DCELHVLN 196 (776)
Q Consensus 137 ~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~-------~~---------~~~~~~~~SpDg~~la~~~--~~~l~~~~ 196 (776)
+|..|+++ .+..|.++|+.++..+ .+... .+ .....++++|++..|.... ++.|++++
T Consensus 634 -~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d 711 (1057)
T PLN02919 634 -KKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYN 711 (1057)
T ss_pred -CCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEE
Confidence 88888776 3456888998887765 44221 00 0123468899666554443 35799999
Q ss_pred cCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 197 LLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 197 l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+.+|..+.+.-++.. ....+.. .....+....+++++|||+.|++.....
T Consensus 712 ~~~g~v~~~~G~G~~-~~~~g~~--~~~~~~~~P~GIavspdG~~LYVADs~n--------------------------- 761 (1057)
T PLN02919 712 ISDGVTRVFSGDGYE-RNLNGSS--GTSTSFAQPSGISLSPDLKELYIADSES--------------------------- 761 (1057)
T ss_pred CCCCeEEEEecCCcc-ccCCCCc--cccccccCccEEEEeCCCCEEEEEECCC---------------------------
Confidence 998877655422210 0000100 0001122245789999999877654221
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCC-C----CCC--------CCcceEEEEEeccCCeEEEEEEeecCceEEEEE
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGG-T----DQN--------YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLK 343 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~-~----~~~--------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 343 (776)
..|.+||++++....+.-..+. + ..- .....-..+++++||++ +++ +. .+..|.+
T Consensus 762 --------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-YVA-Ds--~N~rIrv 829 (1057)
T PLN02919 762 --------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-YVA-DS--YNHKIKK 829 (1057)
T ss_pred --------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcE-EEE-EC--CCCEEEE
Confidence 3467777776654433210000 0 000 00112246889999973 333 22 3456999
Q ss_pred EECCCCceEEEEEeccCceeec---ccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee
Q 004067 344 FDIKTGQRKVILVEELDSWVNL---HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 405 (776)
Q Consensus 344 ~d~~~g~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~ 405 (776)
||++++....+.......+.+. ...|. .+.+++.++++-+|+++. +...|.++++++++.
T Consensus 830 iD~~tg~v~tiaG~G~~G~~dG~~~~a~l~-~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 830 LDPATKRVTTLAGTGKAGFKDGKALKAQLS-EPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCeEEEEeccCCcCCCCCcccccccC-CceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence 9999988877654322222111 11121 112233333333444433 223788888877654
No 291
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=6.4e-05 Score=68.93 Aligned_cols=236 Identities=14% Similarity=0.125 Sum_probs=141.7
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+++.-||++..--.+ ...|.+||+..|..-.... .++..+.+..-+.
T Consensus 20 V~avryN~dGnY~ltcGs-----drtvrLWNp~rg~liktYs-----------------------ghG~EVlD~~~s~-- 69 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGS-----DRTVRLWNPLRGALIKTYS-----------------------GHGHEVLDAALSS-- 69 (307)
T ss_pred eEEEEEccCCCEEEEcCC-----CceEEeecccccceeeeec-----------------------CCCceeeeccccc--
Confidence 478899999998875433 3579999998887533332 1234566666666
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce--eEEeeCCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ--RQLTHGANGN 212 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~--~~lt~~~~~~ 212 (776)
|+..++.. .+..+++||+++|+..+++-.+. +.+..++|..+..-++..+. ..+.+||-.+... .|+..+-..
T Consensus 70 -Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D- 146 (307)
T KOG0316|consen 70 -DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL-AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD- 146 (307)
T ss_pred -cccccccCCCCceEEEEEcccCeeeeeccccc-ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-
Confidence 88888866 56779999999999885555443 45888999877765554442 4577887765433 333221110
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
+ +.++.. .+-.|+-.+.| ..+..||+
T Consensus 147 ----~------------V~Si~v--~~heIvaGS~D------------------------------------GtvRtydi 172 (307)
T KOG0316|consen 147 ----G------------VSSIDV--AEHEIVAGSVD------------------------------------GTVRTYDI 172 (307)
T ss_pred ----c------------eeEEEe--cccEEEeeccC------------------------------------CcEEEEEe
Confidence 0 111111 12233333322 23567777
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC-ceeeccccccc
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTP 371 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~ 371 (776)
..|....- .....+..++||+||+..+..+ -+..|.++|-++|+.-........ .|- ....+.
T Consensus 173 R~G~l~sD----------y~g~pit~vs~s~d~nc~La~~----l~stlrLlDk~tGklL~sYkGhkn~eyk-ldc~l~- 236 (307)
T KOG0316|consen 173 RKGTLSSD----------YFGHPITSVSFSKDGNCSLASS----LDSTLRLLDKETGKLLKSYKGHKNMEYK-LDCCLN- 236 (307)
T ss_pred ecceeehh----------hcCCcceeEEecCCCCEEEEee----ccceeeecccchhHHHHHhcccccceee-eeeeec-
Confidence 66654321 1234578899999999444433 356799999999986443332211 111 111111
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
..+..++...++| .+|.||+..+.
T Consensus 237 -------qsdthV~sgSEDG--~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 237 -------QSDTHVFSGSEDG--KVYFWDLVDET 260 (307)
T ss_pred -------ccceeEEeccCCc--eEEEEEeccce
Confidence 1344677777888 89999976543
No 292
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.41 E-value=0.00036 Score=71.13 Aligned_cols=272 Identities=11% Similarity=0.058 Sum_probs=154.1
Q ss_pred ChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHH
Q 004067 42 SLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERL 120 (776)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~ 120 (776)
....+|+.++. -.+..+.|.+||+-|. +....+|.+|+..+.+. +++..|+
T Consensus 236 k~~~~fek~ek--k~Vl~v~F~engdviT------gDS~G~i~Iw~~~~~~~~k~~~aH~-------------------- 287 (626)
T KOG2106|consen 236 KRQGIFEKREK--KFVLCVTFLENGDVIT------GDSGGNILIWSKGTNRISKQVHAHD-------------------- 287 (626)
T ss_pred EEeeccccccc--eEEEEEEEcCCCCEEe------ecCCceEEEEeCCCceEEeEeeecC--------------------
Confidence 34556655443 2357889999999885 44457899999977664 4444433
Q ss_pred HHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCCC-EEEEEECCcEEEEecC
Q 004067 121 RERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDGT-MIAFVRDCELHVLNLL 198 (776)
Q Consensus 121 ~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg~-~la~~~~~~l~~~~l~ 198 (776)
.++....--. ||+.|-=.+|..|-.||-.=.+.+ .+.-.+ .+.++ ..-+.+. .++=+++|.|-.=+++
T Consensus 288 ----ggv~~L~~lr---~GtllSGgKDRki~~Wd~~y~k~r-~~elPe~~G~iR--tv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 288 ----GGVFSLCMLR---DGTLLSGGKDRKIILWDDNYRKLR-ETELPEQFGPIR--TVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred ----CceEEEEEec---CccEeecCccceEEeccccccccc-cccCchhcCCee--EEecCCCcEEEeeccceEEEeeec
Confidence 4788888888 998777447778999983333333 222111 11122 2223222 2223345556666666
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
++-.. ++..... . ..+++-.|+...++....+
T Consensus 358 ~~f~~-~v~gh~d-------e----------lwgla~hps~~q~~T~gqd------------------------------ 389 (626)
T KOG2106|consen 358 NGFTL-TVQGHGD-------E----------LWGLATHPSKNQLLTCGQD------------------------------ 389 (626)
T ss_pred CCceE-EEEeccc-------c----------eeeEEcCCChhheeeccCc------------------------------
Confidence 55432 2221110 0 2256778888877765433
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEec
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE 358 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 358 (776)
.++.+|+ ..++..- ..-......+.|.|-| .++... ..+...++|.++...-.+-.+.
T Consensus 390 ------k~v~lW~--~~k~~wt---------~~~~d~~~~~~fhpsg-~va~Gt----~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 390 ------KHVRLWN--DHKLEWT---------KIIEDPAECADFHPSG-VVAVGT----ATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred ------ceEEEcc--CCceeEE---------EEecCceeEeeccCcc-eEEEee----ccceEEEEecccceeEEEEecC
Confidence 3467777 2222111 0112235567899999 666655 3456788898885544444432
Q ss_pred cCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 359 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+.-. -.|+| ++.++.....++.-.||+++.+|.+...+-........-+.||+|++++.-.+
T Consensus 448 ~~ls~---v~ysp--------~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 448 EQLSV---VRYSP--------DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred CceEE---EEEcC--------CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 22111 12444 34466677788877788888888776655443323223345999999654443
No 293
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.40 E-value=0.0024 Score=65.42 Aligned_cols=272 Identities=11% Similarity=0.043 Sum_probs=147.9
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCcccee---cCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELK---LSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~---l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~ 201 (776)
.+....|.| -+..|+.+ ..+.||.|+++++....+ +...+...+..+.|.++|+-|-=-++++|.+|+..+..
T Consensus 202 ~v~~a~FHP---td~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 202 VVFLATFHP---TDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR 278 (626)
T ss_pred eEEEEEecc---CCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce
Confidence 577889999 77766665 778999999999876521 22222223667899999998777777899999987765
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
+.+-.....+ | +..+.---||+.| ....|
T Consensus 279 ~~k~~~aH~g-----g------------v~~L~~lr~Gtll-SGgKD--------------------------------- 307 (626)
T KOG2106|consen 279 ISKQVHAHDG-----G------------VFSLCMLRDGTLL-SGGKD--------------------------------- 307 (626)
T ss_pred EEeEeeecCC-----c------------eEEEEEecCccEe-ecCcc---------------------------------
Confidence 5433221111 0 2233344555522 21111
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCc
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 361 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 361 (776)
..|..||-+=++.+.+.+ +...+.+..++ +.+--|+....| ..|..=.++++-...+..+.+.-
T Consensus 308 ---Rki~~Wd~~y~k~r~~el-------Pe~~G~iRtv~--e~~~di~vGTtr----N~iL~Gt~~~~f~~~v~gh~del 371 (626)
T KOG2106|consen 308 ---RKIILWDDNYRKLRETEL-------PEQFGPIRTVA--EGKGDILVGTTR----NFILQGTLENGFTLTVQGHGDEL 371 (626)
T ss_pred ---ceEEeccccccccccccC-------chhcCCeeEEe--cCCCcEEEeecc----ceEEEeeecCCceEEEEecccce
Confidence 345667744444444433 22333333332 221124333322 23545555655555555555555
Q ss_pred eeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 362 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
|.-. ..| ++..+.++..++ ++.+|+-.--+...+.... ... ..|.|.| .|++-... -+
T Consensus 372 wgla---~hp--------s~~q~~T~gqdk--~v~lW~~~k~~wt~~~~d~--~~~-~~fhpsg-~va~Gt~~-----G~ 429 (626)
T KOG2106|consen 372 WGLA---THP--------SKNQLLTCGQDK--HVRLWNDHKLEWTKIIEDP--AEC-ADFHPSG-VVAVGTAT-----GR 429 (626)
T ss_pred eeEE---cCC--------ChhheeeccCcc--eEEEccCCceeEEEEecCc--eeE-eeccCcc-eEEEeecc-----ce
Confidence 5321 111 233556666666 8888882222233444322 222 3488988 44444332 24
Q ss_pred EEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC
Q 004067 442 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 498 (776)
Q Consensus 442 l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~ 498 (776)
...++..+ . ..++.-++......+.+||||..||..+.. +.||++..+
T Consensus 430 w~V~d~e~--~---~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d----~~iyiy~Vs 477 (626)
T KOG2106|consen 430 WFVLDTET--Q---DLVTIHTDNEQLSVVRYSPDGAFLAVGSHD----NHIYIYRVS 477 (626)
T ss_pred EEEEeccc--c---eeEEEEecCCceEEEEEcCCCCEEEEecCC----CeEEEEEEC
Confidence 55666522 1 234444554446677999999999998655 347766654
No 294
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.40 E-value=8.9e-06 Score=80.41 Aligned_cols=228 Identities=12% Similarity=0.073 Sum_probs=127.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.|-++..+++- +.....|.+|+..+++...+..-. ....++.+..|.+
T Consensus 178 v~~v~~l~~sdtlat-----gg~Dr~Ik~W~v~~~k~~~~~tLa---------------------Gs~g~it~~d~d~-- 229 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLAT-----GGSDRIIKLWNVLGEKSELISTLA---------------------GSLGNITSIDFDS-- 229 (459)
T ss_pred cceeEEccCcchhhh-----cchhhhhhhhhcccchhhhhhhhh---------------------ccCCCcceeeecC--
Confidence 467778888777773 333457888888877732222110 1124688889998
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeE-EeeCCCCCc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQ-LTHGANGNT 213 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~-lt~~~~~~~ 213 (776)
|+++++-. .++.+.+|+++.....-+|+.+. ..+....|.....+++-.+. ..|-.||+..+.... +........
T Consensus 230 -~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD 307 (459)
T KOG0288|consen 230 -DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT-DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCND 307 (459)
T ss_pred -CCceEEeecCCCceeeeeccchhhhhhhcccc-cceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccc
Confidence 88887755 67789999999887764666543 34777777776665333322 234444443332110 100000011
Q ss_pred eecCCc------------cc-------cee-cccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCccee
Q 004067 214 VTHGLA------------EY-------IAQ-EEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDH 273 (776)
Q Consensus 214 ~~~~~~------------~~-------~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (776)
+.++.. -| ... +-.+++.++..++||..|+..+.+
T Consensus 308 I~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD------------------------- 362 (459)
T KOG0288|consen 308 IVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD------------------------- 362 (459)
T ss_pred eEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC-------------------------
Confidence 111100 00 000 011234455556666555543322
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 274 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 274 ~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
-.+-++|+.+.++...-...+ ..-......+.|||||.+++..+ -++.||+|+..+|+...
T Consensus 363 -----------dtl~viDlRt~eI~~~~sA~g----~k~asDwtrvvfSpd~~YvaAGS----~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 363 -----------DTLKVIDLRTKEIRQTFSAEG----FKCASDWTRVVFSPDGSYVAAGS----ADGSVYIWSVFTGKLEK 423 (459)
T ss_pred -----------CceeeeecccccEEEEeeccc----cccccccceeEECCCCceeeecc----CCCcEEEEEccCceEEE
Confidence 235677777777665433211 22223366799999999887665 56679999999999876
Q ss_pred EEEec
Q 004067 354 ILVEE 358 (776)
Q Consensus 354 l~~~~ 358 (776)
+....
T Consensus 424 ~l~~s 428 (459)
T KOG0288|consen 424 VLSLS 428 (459)
T ss_pred EeccC
Confidence 65543
No 295
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.38 E-value=1.3e-05 Score=82.83 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=98.2
Q ss_pred HHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 582 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 582 ~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
-.....|+-|+.+.+.-.. ....+++|+..+...++++ -+-+..|..|+|-|.||.+++++|+.
T Consensus 94 G~AL~~GHPvYFV~F~p~P-------------~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~ 160 (581)
T PF11339_consen 94 GVALRAGHPVYFVGFFPEP-------------EPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAAL 160 (581)
T ss_pred HHHHHcCCCeEEEEecCCC-------------CCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhc
Confidence 3344569988888765211 1223467776654444332 12244599999999999999999999
Q ss_pred CCCceEEEE-EcCCCCCcccc------------------------------c---------------cccc---------
Q 004067 659 FPDVFQCAV-SGAPVTSWDGY------------------------------D---------------TFYT--------- 683 (776)
Q Consensus 659 ~~~~~~~~v-~~~~~~~~~~~------------------------------~---------------~~~~--------- 683 (776)
+|+.+.-+| ..+|+..|... + ..|.
T Consensus 161 ~Pd~~gplvlaGaPlsywaG~~g~nPmRy~ggl~ggsw~~~l~sDlG~G~fdGa~lv~nFe~lnPa~~~w~K~y~Ly~~i 240 (581)
T PF11339_consen 161 RPDLVGPLVLAGAPLSYWAGERGDNPMRYMGGLLGGSWLTALVSDLGNGRFDGAWLVQNFENLNPANTYWSKYYDLYANI 240 (581)
T ss_pred CcCccCceeecCCCcccccCCCCCCcHHHhcCCCcchHHHHHHHHcCCCccCcHHHHhhhhccChhHHHHHHHHHHHhcc
Confidence 999886555 45665443200 0 0000
Q ss_pred ----------ccccCCCCC-Ccc--------chh-----------cCChhhhhccCCCcEEEEecCCCCccChHHHHHH-
Q 004067 684 ----------EKYMGLPSE-DPV--------GYE-----------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL- 732 (776)
Q Consensus 684 ----------~~~~~~~~~-~~~--------~~~-----------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~- 732 (776)
++|.+.+.. ..+ .|. ..-..-.+++|++|+.++.+..|.++||+++...
T Consensus 241 D~e~~Rfl~FErWwgg~~~l~~~ei~~Iv~nLFvgNrL~~g~~~~~~G~~~DLr~Ir~Piivfas~gDnITPP~QaL~WI 320 (581)
T PF11339_consen 241 DTERERFLEFERWWGGFYDLNGEEILWIVENLFVGNRLAKGEFRVSDGRRVDLRNIRSPIIVFASYGDNITPPQQALNWI 320 (581)
T ss_pred CCchhhhhHHHHHhCCccCCCHHHHHHHHHHHhccchhccCceeccCCcEeehhhCCCCEEEEeccCCCCCChhHhccch
Confidence 000111000 000 000 0011234788999999999999999999988433
Q ss_pred ------HHHHHHCCCCeEEEEecCCCCC
Q 004067 733 ------INALVAARKPYEILIFPDERHM 754 (776)
Q Consensus 733 ------~~~l~~~~~~~~~~~~~~~~H~ 754 (776)
.+.++.+|..+-+.+.+..||-
T Consensus 321 ~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 321 PDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred HhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 3567777888888889999995
No 296
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=6.2e-06 Score=81.98 Aligned_cols=182 Identities=12% Similarity=0.063 Sum_probs=111.7
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEe-cCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFD-PKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.-++|++||..|+--.. ...+.+|+ +.-... . -+..++..|.+..|||
T Consensus 148 k~vaf~~~gs~latgg~-----dg~lRv~~~Ps~~t~---l---------------------~e~~~~~eV~DL~FS~-- 196 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT-----DGTLRVWEWPSMLTI---L---------------------EEIAHHAEVKDLDFSP-- 196 (398)
T ss_pred eEEEEcCCCCEeeeccc-----cceEEEEecCcchhh---h---------------------hhHhhcCccccceeCC--
Confidence 56789999999995433 34577777 332211 0 0112345788999999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCC---CEEEEEECC---cEEEEe--cCCC----cee
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDG---TMIAFVRDC---ELHVLN--LLIN----EQR 203 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg---~~la~~~~~---~l~~~~--l~~g----~~~ 203 (776)
||+.|++.......+|++.+|.....+++.. .......+|+-|+ ...++.... .+..++ +..+ ..+
T Consensus 197 -dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~ 275 (398)
T KOG0771|consen 197 -DGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR 275 (398)
T ss_pred -CCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh
Confidence 9999999877799999999996654555322 2235667888887 333333321 121111 1112 222
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
+.+.... -+.++..|+||+.++..+.+
T Consensus 276 ~~~~~~~------------------siSsl~VS~dGkf~AlGT~d----------------------------------- 302 (398)
T KOG0771|consen 276 KKIKRFK------------------SISSLAVSDDGKFLALGTMD----------------------------------- 302 (398)
T ss_pred hhhhccC------------------cceeEEEcCCCcEEEEeccC-----------------------------------
Confidence 2221111 15688999999999987753
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
..+-+++..+=+...+-. ..|...++.+.||||.+.++.++
T Consensus 303 -GsVai~~~~~lq~~~~vk-------~aH~~~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 303 -GSVAIYDAKSLQRLQYVK-------EAHLGFVTGLTFSPDSRYLASVS 343 (398)
T ss_pred -CcEEEEEeceeeeeEeeh-------hhheeeeeeEEEcCCcCcccccc
Confidence 234566655544444322 34667899999999998777654
No 297
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.37 E-value=2.5e-06 Score=87.91 Aligned_cols=232 Identities=19% Similarity=0.107 Sum_probs=123.9
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhh----h
Q 004067 535 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS----I 610 (776)
Q Consensus 535 ~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~----~ 610 (776)
..+.+.++.|.... ..+++|++++.||.......... .+..++..++.++..+....+...-..... .
T Consensus 31 ~~~~~~l~~p~~~~-~~~~~p~v~~~h~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (299)
T COG1073 31 IALAAVLHLPPSGN-EEKKLPAVVFLHGFGSSKEQSLG-------YAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEG 102 (299)
T ss_pred ceeeeEEEecCCCC-ccccCceEEeccCccccccCcch-------HHHHhhhceeEEeeeccccccccccccccccCccc
Confidence 56888888887642 22578999999997665432111 367788889998888752221111000000 0
Q ss_pred -hhccC-CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC---ceEEEEEcCCCCCc----------
Q 004067 611 -KHNCG-RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTSW---------- 675 (776)
Q Consensus 611 -~~~~~-~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~---~~~~~v~~~~~~~~---------- 675 (776)
..... ..........+..-........++....|+++||..+..++...+. ..+..+...+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~ 182 (299)
T COG1073 103 YAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANP 182 (299)
T ss_pred cccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccch
Confidence 00000 0000000000000000001122566777777777777666665441 11111111111000
Q ss_pred ---cc------cccccccc-----ccCCCCCCccchhcCChhhhhccCC-CcEEEEecCCCCccChHHHHHHHHHHHHCC
Q 004067 676 ---DG------YDTFYTEK-----YMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR 740 (776)
Q Consensus 676 ---~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 740 (776)
.. ....+... ...........+...++...+.++. .|+|++||..|..+|...+..++......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~- 261 (299)
T COG1073 183 ELARELIDYLITPGGFAPLPAPEAPLDTLPLRAVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER- 261 (299)
T ss_pred HHHHhhhhhhccCCCCCCCCcccccccccccchhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC-
Confidence 00 00000000 0000000011244556666677777 69999999999999999999999988554
Q ss_pred CCeEEEEecCCCCCCCCCCcH--HHHHHHHHHHHHHhC
Q 004067 741 KPYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 776 (776)
Q Consensus 741 ~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l 776 (776)
+....++++++|........ .+.+..+.+||.++|
T Consensus 262 -~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 262 -PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred -CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 66788899999987643333 489999999999875
No 298
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.37 E-value=1.4e-05 Score=79.02 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=125.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCC-------CCCCCCCCHHHHH-HHHHHHHhcCCe
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDG-------GLDENNISPEEKL-RRERLRERGLGV 127 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~-------~~~~~~i~~~~~~-~~~~~~~~~~~~ 127 (776)
+++..+-+|++++.-.+. ..++.+|+++.... .+|+.|.+. -.....++..... +... ......
T Consensus 222 it~~d~d~~~~~~iAas~-----d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W--Dl~k~~ 294 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASN-----DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW--DLQKAY 294 (459)
T ss_pred cceeeecCCCceEEeecC-----CCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh--hhhhhh
Confidence 578899999998864443 34699999987654 344444330 0011111111000 0000 000011
Q ss_pred eeEEEeecCCCceEEE-----Ee--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCC
Q 004067 128 TRYEWVKTSSKKKIIM-----VP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLI 199 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~-----~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~ 199 (776)
..-..-|.|.+....+ ++ -+.+|-.||..++..+ .-.+.. +.+..+..|+||..|...+ ++.+-++|+.+
T Consensus 295 C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~-~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 295 CSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKT-RSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred eeccccccccccceEecceeeeecccccceEEEeccCCcee-eEeecC-cceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 1111112222332221 22 4567899998888776 332222 3588999999999776654 45689999999
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
.++++...... +.+ ..+| ....|||||.+++-.+.+
T Consensus 373 ~eI~~~~sA~g---~k~-asDw---------trvvfSpd~~YvaAGS~d------------------------------- 408 (459)
T KOG0288|consen 373 KEIRQTFSAEG---FKC-ASDW---------TRVVFSPDGSYVAAGSAD------------------------------- 408 (459)
T ss_pred ccEEEEeeccc---ccc-cccc---------ceeEECCCCceeeeccCC-------------------------------
Confidence 99987755332 111 2233 367899999998876643
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
..||+|++.+++....--. ......+..++|+|-|+.++.+.
T Consensus 409 -----gsv~iW~v~tgKlE~~l~~------s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 409 -----GSVYIWSVFTGKLEKVLSL------STSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred -----CcEEEEEccCceEEEEecc------CCCCcceEEEEEcCCCchhhccc
Confidence 4589999999997654221 22333789999999998776554
No 299
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.37 E-value=0.0003 Score=70.36 Aligned_cols=157 Identities=9% Similarity=0.043 Sum_probs=105.4
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEE-ecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVL-NLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~-~l~~g~~ 202 (776)
..+....++| |...++.. .+..|++|..-.......+...+ ..+......|.|.+++..++..-|.+ +..+|..
T Consensus 262 kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~-~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 262 KKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHE-EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred eEEEEEEecc---chhheeecCCcceEEeeccccccCcccccccc-ccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 3577888888 88877765 56678889876655541233333 35888999999999999998776655 5566644
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
.......... +. +...+|.|||-.+.....
T Consensus 338 lt~vs~~~s~-----v~----------~ts~~fHpDgLifgtgt~----------------------------------- 367 (506)
T KOG0289|consen 338 LTVVSDETSD-----VE----------YTSAAFHPDGLIFGTGTP----------------------------------- 367 (506)
T ss_pred EEEEeecccc-----ce----------eEEeeEcCCceEEeccCC-----------------------------------
Confidence 3332221111 11 346789999954332221
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
...|.+||++++....- ++++.+.+..++||.+|-+++... ++..+.+||+..
T Consensus 368 -d~~vkiwdlks~~~~a~--------Fpght~~vk~i~FsENGY~Lat~a----dd~~V~lwDLRK 420 (506)
T KOG0289|consen 368 -DGVVKIWDLKSQTNVAK--------FPGHTGPVKAISFSENGYWLATAA----DDGSVKLWDLRK 420 (506)
T ss_pred -CceEEEEEcCCcccccc--------CCCCCCceeEEEeccCceEEEEEe----cCCeEEEEEehh
Confidence 15689999998763221 256888899999999998888776 445599999965
No 300
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.35 E-value=1.7e-05 Score=80.69 Aligned_cols=202 Identities=18% Similarity=0.160 Sum_probs=113.0
Q ss_pred EEEEEEc-CCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC--CCchhhhhhhhhc
Q 004067 537 LYGALYK-PDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA--RRGLKFEASIKHN 613 (776)
Q Consensus 537 l~~~~~~-P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g--~~~~~~~~~~~~~ 613 (776)
-..|++. |... .++.-|+||++|||+...............+...+ . ...++++||.-.. ..+..+.
T Consensus 106 ~s~Wlvk~P~~~--~pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~yP------ 175 (374)
T PF10340_consen 106 QSYWLVKAPNRF--KPKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKYP------ 175 (374)
T ss_pred ceEEEEeCCccc--CCCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcCc------
Confidence 3467776 6542 12345999999998655432211100011111122 2 5689999987543 1122222
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh--C---CCceEEEEEcCCCCCccccc----c----
Q 004067 614 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR--F---PDVFQCAVSGAPVTSWDGYD----T---- 680 (776)
Q Consensus 614 ~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~--~---~~~~~~~v~~~~~~~~~~~~----~---- 680 (776)
..+.++.+..++|.+.. ..++|.++|-|+||.+++.++.. + ...-+.+|+++|........ .
T Consensus 176 ---tQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~ 250 (374)
T PF10340_consen 176 ---TQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHD 250 (374)
T ss_pred ---hHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccc
Confidence 23667899999999543 34689999999999999988753 1 11247899999987654110 0
Q ss_pred -------------cccccccCC--CCCCc--cchhcC-C--hhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 681 -------------FYTEKYMGL--PSEDP--VGYEYS-S--VMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 681 -------------~~~~~~~~~--~~~~~--~~~~~~-~--~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
.+.+.|.+. +.... ..+... . ....-..+ +.-++++.|+++-. ..+.+++++.+..
T Consensus 251 n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~~ 328 (374)
T PF10340_consen 251 NEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLND 328 (374)
T ss_pred cccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHhh
Confidence 111222222 10000 000000 0 00111121 25799999988744 3578889998875
Q ss_pred CCC-----CeEEEEecCCCCCC
Q 004067 739 ARK-----PYEILIFPDERHMP 755 (776)
Q Consensus 739 ~~~-----~~~~~~~~~~~H~~ 755 (776)
.+. ..++.+.+++.|.-
T Consensus 329 ~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 329 VKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred cCccccCCcceEEEecCCcccc
Confidence 543 36777888888953
No 301
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.34 E-value=3.8e-05 Score=67.92 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=90.4
Q ss_pred CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCcc
Q 004067 616 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 695 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (776)
....+|-++.++...... .+.++|++||+|+.+++.++.+....++++++++|..--+ +.....
T Consensus 40 ~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~-------------~~~~~~ 103 (181)
T COG3545 40 APVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSR-------------PEIRPK 103 (181)
T ss_pred CCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccc-------------cccchh
Confidence 334566666555444432 3459999999999999999988766889999998863211 000000
Q ss_pred chhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC--CCCCcHHHHHHHHHHHHH
Q 004067 696 GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 696 ~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~ 773 (776)
.....++. ...++.-|.++++..+|+.++++.++.+++.+-+ .++....+||.. .......+.+..+.+|+.
T Consensus 104 ~~~tf~~~-p~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 104 HLMTFDPI-PREPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred hccccCCC-ccccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 11111111 1223446899999999999999999999998732 577788889964 234456666777777765
Q ss_pred H
Q 004067 774 R 774 (776)
Q Consensus 774 ~ 774 (776)
+
T Consensus 178 ~ 178 (181)
T COG3545 178 R 178 (181)
T ss_pred h
Confidence 4
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.34 E-value=0.0018 Score=75.83 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=117.9
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEE----ecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSF----DPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~----~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
..+.++.+-+|...|...... +.|.++ +.++.+...+...+ .|+.+.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~-----Gdi~~~~~~~~~~~~~~E~VG~vd------------------------~GI~a~ 126 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALAS-----GDIILVREDPDPDEDEIEIVGSVD------------------------SGILAA 126 (928)
T ss_pred CcEEEEEeccCCCcEEEEECC-----ceEEEEEccCCCCCceeEEEEEEc------------------------CcEEEE
Confidence 345677777888777766653 358888 77777777666543 489999
Q ss_pred EEeecCCCceEEEEeC-CCcEEEEeC----------C--------------CCccceecCC-------------C-----
Q 004067 131 EWVKTSSKKKIIMVPL-PDGIYFQDL----------S--------------CSKPELKLSS-------------S----- 167 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~~-~~~l~~~d~----------~--------------~~~~~~~l~~-------------~----- 167 (776)
+||| |+..|++.. .++|.+++. . |++.+ ++.. .
T Consensus 127 ~WSP---D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT-QF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 127 SWSP---DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKET-QFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred EECC---CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccC-ccCcchhhhhhhhccCCCCCccc
Confidence 9999 999999873 344443321 0 11111 1100 0
Q ss_pred -----CCCCccCceeCCCCCEEEEEEC-------CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEE
Q 004067 168 -----SCSPVIDPHLSSDGTMIAFVRD-------CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW 235 (776)
Q Consensus 168 -----~~~~~~~~~~SpDg~~la~~~~-------~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 235 (776)
.......++|-.||+++|..+- +.+.+|+-+ |+.... .++ .. +.-..++|
T Consensus 203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~-----v~-----------gLe~~l~W 264 (928)
T PF04762_consen 203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-SEP-----VD-----------GLEGALSW 264 (928)
T ss_pred cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-ccc-----CC-----------CccCCccC
Confidence 0001223567788888877652 124444433 322111 111 11 11336789
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
.|.|..||........ ..|..+..+|-+...+.+. ....+..
T Consensus 265 rPsG~lIA~~q~~~~~---------------------------------~~VvFfErNGLrhgeF~l~-----~~~~~~~ 306 (928)
T PF04762_consen 265 RPSGNLIASSQRLPDR---------------------------------HDVVFFERNGLRHGEFTLR-----FDPEEEK 306 (928)
T ss_pred CCCCCEEEEEEEcCCC---------------------------------cEEEEEecCCcEeeeEecC-----CCCCCce
Confidence 9999999887642211 3456666666555555543 1134557
Q ss_pred EEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 316 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 316 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
+..+.|++|+.+|+++... .|.+|-...-.+
T Consensus 307 v~~l~Wn~ds~iLAv~~~~-----~vqLWt~~NYHW 337 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLED-----RVQLWTRSNYHW 337 (928)
T ss_pred eeEEEECCCCCEEEEEecC-----CceEEEeeCCEE
Confidence 7889999999988887621 166676655443
No 303
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.33 E-value=0.00034 Score=68.82 Aligned_cols=281 Identities=17% Similarity=0.183 Sum_probs=154.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
+++..+ +++|. .+.+.+.+.+|+.+|....++..|.. .+.+..|--..+
T Consensus 109 Ssv~~~--~~~Il-----tgsYDg~~riWd~~Gk~~~~~~Ght~------------------------~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 109 SSVKGA--SKWIL-----TGSYDGTSRIWDLKGKSIKTIVGHTG------------------------PIKSVAWVIKNS 157 (423)
T ss_pred hhhccc--CceEE-----EeecCCeeEEEecCCceEEEEecCCc------------------------ceeeeEEEecCC
Confidence 444445 67776 34455679999999988888886533 455555532000
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccce-ecC--CCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCC--
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPEL-KLS--SSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGAN-- 210 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~-~l~--~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~-- 210 (776)
-...++.+ .+..|.+|-.+-++... .+. .+....+..++..+||.+++-.+ +..|-+|+.+......+-....
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 11223333 55566665555444331 111 13334477788889999887765 4567777733322221111000
Q ss_pred ------CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCe
Q 004067 211 ------GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVK 284 (776)
Q Consensus 211 ------~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 284 (776)
........+--.-+.+.+.+.++.|++ ...++..+.|
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD------------------------------------ 280 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD------------------------------------ 280 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc------------------------------------
Confidence 000011111112223334466788877 4334433332
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE----EEeccC
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI----LVEELD 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l----~~~~~~ 360 (776)
-.|.+||+.++....- ......+..+..+|..+.|+..+ .+..|.+||+.++.-..+ ..+.
T Consensus 281 HTIk~WDletg~~~~~---------~~~~ksl~~i~~~~~~~Ll~~gs----sdr~irl~DPR~~~gs~v~~s~~gH~-- 345 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKST---------LTTNKSLNCISYSPLSKLLASGS----SDRHIRLWDPRTGDGSVVSQSLIGHK-- 345 (423)
T ss_pred ceEEEEEeecccceee---------eecCcceeEeecccccceeeecC----CCCceeecCCCCCCCceeEEeeecch--
Confidence 4589999998875433 12234567789999888776554 466799999987754333 3332
Q ss_pred ceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCc--eeeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~--~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.|+.. -.++| .+.+.|.|- -++ .+.+||.... ....|..++..+...- |+. +. .++++..+
T Consensus 346 nwVss-vkwsp--------~~~~~~~S~S~D~--t~klWDvRS~k~plydI~~h~DKvl~vd-W~~-~~-~IvSGGaD 409 (423)
T KOG0313|consen 346 NWVSS-VKWSP--------TNEFQLVSGSYDN--TVKLWDVRSTKAPLYDIAGHNDKVLSVD-WNE-GG-LIVSGGAD 409 (423)
T ss_pred hhhhh-eecCC--------CCceEEEEEecCC--eEEEEEeccCCCcceeeccCCceEEEEe-ccC-Cc-eEEeccCc
Confidence 36432 22333 233566553 466 7888886543 4667777776666655 543 22 44554444
No 304
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.33 E-value=2.9e-06 Score=82.73 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=109.2
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHH-hCCc----EEEEECCCCC----CCCchhhhhhh-----hhcc---CC
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGI----LVWKLDNRGT----ARRGLKFEASI-----KHNC---GR 616 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~-~~G~----~v~~~d~rg~----g~~~~~~~~~~-----~~~~---~~ 616 (776)
....||+||..++.. .+..++..+. +.|. .++.++.-|. |.....-..++ .... ..
T Consensus 11 ~tPTifihG~~gt~~-------s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~ 83 (255)
T PF06028_consen 11 TTPTIFIHGYGGTAN-------SFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYK 83 (255)
T ss_dssp -EEEEEE--TTGGCC-------CCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHH
T ss_pred CCcEEEECCCCCChh-------HHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHH
Confidence 346688999776643 3455677776 5553 3444444432 11110000000 0000 01
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC------CCceEEEEEcCCCCCcccccccccccc---c
Q 004067 617 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGYDTFYTEKY---M 687 (776)
Q Consensus 617 ~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~---~ 687 (776)
....-+..++.+|.++..+ .++=++||||||..++.++..+ |.+-+.+.+.+|+-............. -
T Consensus 84 ~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~~ 161 (255)
T PF06028_consen 84 KQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNKN 161 (255)
T ss_dssp HHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CSTT
T ss_pred HHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhccc
Confidence 1345678888888888755 4999999999999999998874 333344444455443322111000000 0
Q ss_pred CCCCCCccchhcCChhhhhccC--CCcEEEEecC------CCCccChHHHHHHHHHHHHCCCCeEEEEecC--CCCCCCC
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKM--KGKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRR 757 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i--~~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~~~ 757 (776)
+ |......|...-... -..+ ...+|-|.|. .|..||...+..+..-++......+-.++.| +.|+-.+
T Consensus 162 g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~Lh 239 (255)
T PF06028_consen 162 G-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLH 239 (255)
T ss_dssp --BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGG
T ss_pred C-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCC
Confidence 1 222222222111110 1222 2579999998 7999999988888777766667777777765 5787533
Q ss_pred CCcHHHHHHHHHHHH
Q 004067 758 HRDRIYMEERIWEFI 772 (776)
Q Consensus 758 ~~~~~~~~~~~~~fl 772 (776)
....+.+.|.+||
T Consensus 240 --eN~~V~~~I~~FL 252 (255)
T PF06028_consen 240 --ENPQVDKLIIQFL 252 (255)
T ss_dssp --CCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHh
Confidence 3457778888887
No 305
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.30 E-value=6.1e-05 Score=76.75 Aligned_cols=132 Identities=14% Similarity=-0.004 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHHcCCCCC--CcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC--cccc----------cc---
Q 004067 618 DAEDQLTGAEWLIKQGLAKV--GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--WDGY----------DT--- 680 (776)
Q Consensus 618 ~~~D~~~~i~~l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~--~~~~----------~~--- 680 (776)
.+.|.+.|+.++.++..... -++.++|+|+||++|..++--.|-.+.+++-.++..- |+.. ..
T Consensus 162 qAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~ 241 (403)
T PF11144_consen 162 QAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGE 241 (403)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccc
Confidence 36788999999988733222 4899999999999999999888999999987665432 1110 00
Q ss_pred ------cccccccCCCCCCc---------cchh-----cCChhhhhccC--CCcEEEEecCCCCccChHHHHHHHHHHHH
Q 004067 681 ------FYTEKYMGLPSEDP---------VGYE-----YSSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVA 738 (776)
Q Consensus 681 ------~~~~~~~~~~~~~~---------~~~~-----~~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 738 (776)
.....+..+.|... +.+. ..+.+...++. ++-....|+..|+.+|+++-.++++.+++
T Consensus 242 ~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~ 321 (403)
T PF11144_consen 242 FFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKN 321 (403)
T ss_pred ccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 00000111222110 0000 00111112222 24457789999999999999999999999
Q ss_pred CCCCeEEEEec
Q 004067 739 ARKPYEILIFP 749 (776)
Q Consensus 739 ~~~~~~~~~~~ 749 (776)
.|-+++++++.
T Consensus 322 lgfda~l~lIk 332 (403)
T PF11144_consen 322 LGFDATLHLIK 332 (403)
T ss_pred cCCCeEEEEec
Confidence 99999999984
No 306
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.29 E-value=5.6e-05 Score=74.85 Aligned_cols=149 Identities=21% Similarity=0.221 Sum_probs=90.2
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+.++++||||+.+||+...+ ....||.....+.....++ +..+..++|++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~--~~~~L~~~~~~~~~~~~~~--------------------------g~~l~~PS~d~- 75 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGD--GGRSLYVGPAGGPVRPVLT--------------------------GGSLTRPSWDP- 75 (253)
T ss_pred cccceEECCCCCeEEEEEEcC--CCCEEEEEcCCCcceeecc--------------------------CCccccccccC-
Confidence 458999999999999999322 2468999987655443333 23577899999
Q ss_pred CCCceEEEEeCCCcEE--EEeCCCCccc-eecCCCCCC-CccCceeCCCCCEEEEEE----CCcEEEEecC---CCceeE
Q 004067 136 SSKKKIIMVPLPDGIY--FQDLSCSKPE-LKLSSSSCS-PVIDPHLSSDGTMIAFVR----DCELHVLNLL---INEQRQ 204 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~--~~d~~~~~~~-~~l~~~~~~-~~~~~~~SpDg~~la~~~----~~~l~~~~l~---~g~~~~ 204 (776)
+|...++....... ..+..++... ..+...... .+..+++||||.++|++. ..+||+..+. +|..+.
T Consensus 76 --~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~ 153 (253)
T PF10647_consen 76 --DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR 153 (253)
T ss_pred --CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce
Confidence 97766665433322 2232333332 123222211 578899999999999999 5678887654 332333
Q ss_pred EeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 205 LTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 205 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
++.... +.......+..+.|++|++.++...
T Consensus 154 l~~~~~-----------~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 154 LTGPRR-----------VAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred eccceE-----------ecccccCcceeeeecCCCEEEEEeC
Confidence 322111 0001112255789999997554433
No 307
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.26 E-value=7.4e-05 Score=75.74 Aligned_cols=183 Identities=16% Similarity=0.046 Sum_probs=124.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+....|+|++.++.-...++ ..+..||+++...+ -+..|. .-+..-+|+|
T Consensus 113 v~~~~f~~~d~t~l~s~sDd----~v~k~~d~s~a~v~~~l~~ht------------------------DYVR~g~~~~- 163 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDD----KVVKYWDLSTAYVQAELSGHT------------------------DYVRCGDISP- 163 (487)
T ss_pred eeEEEecccCCeEEEecCCC----ceEEEEEcCCcEEEEEecCCc------------------------ceeEeecccc-
Confidence 45778999998887554444 45888899888762 233333 2577889999
Q ss_pred CCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
-...|+++ .|+.|.+||......+ ..+-+.+.++..+-+-|.|..||....+++-+||+-+|....- .-....
T Consensus 164 --~~~hivvtGsYDg~vrl~DtR~~~~~-v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~-~~~~H~- 238 (487)
T KOG0310|consen 164 --ANDHIVVTGSYDGKVRLWDTRSLTSR-VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT-SMFNHN- 238 (487)
T ss_pred --CCCeEEEecCCCceEEEEEeccCCce-eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh-hhhccc-
Confidence 88888887 7888999998876443 3333344468889999999999999999999999996644321 111010
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
..+..+.+..||.+|+..+.| ..+.+||..
T Consensus 239 --------------KtVTcL~l~s~~~rLlS~sLD------------------------------------~~VKVfd~t 268 (487)
T KOG0310|consen 239 --------------KTVTCLRLASDSTRLLSGSLD------------------------------------RHVKVFDTT 268 (487)
T ss_pred --------------ceEEEEEeecCCceEeecccc------------------------------------cceEEEEcc
Confidence 114467788899988877654 235666643
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
+=+..-- ..-.+.+-+++.|||++.++...
T Consensus 269 ~~Kvv~s---------~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 269 NYKVVHS---------WKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred ceEEEEe---------eecccceeeEEecCCCceEEEec
Confidence 3332211 23345678899999999777765
No 308
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.26 E-value=4.8e-06 Score=86.34 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=105.8
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc-------eecCCCCCCCccCceeCCCCCEEEEEEC--CcEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE-------LKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHV 194 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~-------~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~ 194 (776)
..+.++.|.| +|.++|++. .++.|-+|.+..+... ..||.+- ..+..++|.|=...++.++. ..|-+
T Consensus 628 t~vtDl~WdP--FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~-eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 628 TLVTDLHWDP--FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG-EKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred ceeeecccCC--CChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc-ceEEEEEecchhhhHhhhhhccceeee
Confidence 4578999999 788999987 5677777766543222 0222222 24677888885444444433 35899
Q ss_pred EecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 195 LNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 195 ~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
||+.++..+.-..+..+ .+.+++|||||++|+.+..|
T Consensus 705 WDl~~~~~~~~l~gHtd-----------------qIf~~AWSpdGr~~AtVcKD-------------------------- 741 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTD-----------------QIFGIAWSPDGRRIATVCKD-------------------------- 741 (1012)
T ss_pred eehhhhhhhheeccCcC-----------------ceeEEEECCCCcceeeeecC--------------------------
Confidence 99998865432222111 15689999999999988754
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 354 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l 354 (776)
..|+||...+++.....-. ......-..+.|.=||++++.+.-......+|-+||+.+-....|
T Consensus 742 ----------g~~rVy~Prs~e~pv~Eg~------gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 742 ----------GTLRVYEPRSREQPVYEGK------GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred ----------ceEEEeCCCCCCCccccCC------CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 4578888877664332111 111234456889999997665544444456788888876554444
No 309
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.26 E-value=2.4e-05 Score=77.33 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=75.0
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..++-++|||+|..+|- +.....|++|-... .+++..+. ...+.++........+.+...+....|+|
T Consensus 66 ~aVN~vRf~p~gelLAS-----g~D~g~v~lWk~~~---~~~~~~d~----e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLAS-----GGDGGEVFLWKQGD---VRIFDADT----EADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred ceeEEEEEcCCcCeeee-----cCCCceEEEEEecC---cCCccccc----hhhhCccceEEEEEecccccchhhhhccC
Confidence 34688999999999983 22235677777652 11110000 00111111111111122234677889999
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC 190 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~ 190 (776)
|+..+++. .++.+++||+..|... .........+...+|-|-+++++-.+..
T Consensus 134 ---d~~~l~s~s~dns~~l~Dv~~G~l~-~~~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 134 ---DSNFLVSGSVDNSVRLWDVHAGQLL-AILDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred ---CCceeeeeeccceEEEEEeccceeE-eeccccccccceeecchhhhhhhhhccC
Confidence 99999987 6778999999999988 4444334457889999999998877643
No 310
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.24 E-value=0.00013 Score=76.50 Aligned_cols=136 Identities=12% Similarity=0.121 Sum_probs=94.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc-eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK-QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.+++|-|||..+.-... ..++++|+..|. .+.|..|++ -+..++||.
T Consensus 15 i~d~afkPDGsqL~lAAg------~rlliyD~ndG~llqtLKgHKD------------------------tVycVAys~- 63 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAG------SRLLVYDTSDGTLLQPLKGHKD------------------------TVYCVAYAK- 63 (1081)
T ss_pred hheeEECCCCceEEEecC------CEEEEEeCCCcccccccccccc------------------------eEEEEEEcc-
Confidence 478999999999986543 359999998665 466666554 588899999
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCce
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
||++++.. .+..+.+|+-.-...- +..++ ..+..+.|.|-...|+..+-++.-.|+.+...+..-...
T Consensus 64 --dGkrFASG~aDK~VI~W~~klEG~L-kYSH~--D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss------ 132 (1081)
T KOG1538|consen 64 --DGKRFASGSADKSVIIWTSKLEGIL-KYSHN--DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSS------ 132 (1081)
T ss_pred --CCceeccCCCceeEEEeccccccee-eeccC--CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhh------
Confidence 99999987 4455667764322222 33333 347889999999999988877777777665543221111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
.|....+|..||+.++..-.
T Consensus 133 -------------~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 133 -------------SRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred -------------eeEEEeeecCCCcEEEEecc
Confidence 12446789999999887654
No 311
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.22 E-value=0.00051 Score=68.29 Aligned_cols=105 Identities=9% Similarity=0.095 Sum_probs=73.0
Q ss_pred CCeeeEEEeecCCCceEEEEeC-CCcEEEEeCC--------C-----Cccc--eecCCCCCCCccCceeCCCCCEEEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLS--------C-----SKPE--LKLSSSSCSPVIDPHLSSDGTMIAFVR 188 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~--------~-----~~~~--~~l~~~~~~~~~~~~~SpDg~~la~~~ 188 (776)
..++...|+| +|..|+... ++.+++|-.. + .+.. ...-.+....+....|+||+..+++.+
T Consensus 66 ~aVN~vRf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 66 RAVNVVRFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred ceeEEEEEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence 4688899999 999999884 4567777544 3 1101 011111223478899999999999987
Q ss_pred C-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 189 D-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 189 ~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
. +-+++||+..|+...+-.+... + +..++|.|-+++|+..+.++
T Consensus 143 ~dns~~l~Dv~~G~l~~~~~dh~~--y---------------vqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQLLAILDDHEH--Y---------------VQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ccceEEEEEeccceeEeecccccc--c---------------cceeecchhhhhhhhhccCc
Confidence 5 5589999999988766544332 1 34678999999988777655
No 312
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.21 E-value=0.00041 Score=73.60 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=71.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc-eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK-QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+.++|||||+++|---. ...+.+.+|+++.-. ...+.+ +..++....|+|
T Consensus 81 ~t~vAfS~~GryvatGEc---G~~pa~kVw~la~h~vVAEfvd------------------------HKY~vtcvaFsp- 132 (1080)
T KOG1408|consen 81 LTCVAFSQNGRYVATGEC---GRTPASKVWSLAFHGVVAEFVD------------------------HKYNVTCVAFSP- 132 (1080)
T ss_pred eeEEEEcCCCcEEEeccc---CCCccceeeeeccccchhhhhh------------------------ccccceeeeecC-
Confidence 478999999999983211 124678888887543 111222 235788999999
Q ss_pred CCCceEEEEeCCCc-----EE--EEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc
Q 004067 136 SSKKKIIMVPLPDG-----IY--FQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE 201 (776)
Q Consensus 136 ~~dg~~l~~~~~~~-----l~--~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~ 201 (776)
.+++|+...... ++ +.++.+...+ +. ..+....||.||.+.+-..+..|-.|.++.+.
T Consensus 133 --~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk--is----s~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~ 197 (1080)
T KOG1408|consen 133 --GNKYVVSVGSQHDMIVNVNDWRVNSSGASNK--IS----SVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS 197 (1080)
T ss_pred --CCcEEEeeccccceEEEhhhhhhcccccccc--cc----eeEEEEEEccCCceeeeeeeeeEEEEEeeccc
Confidence 999988652211 22 2233332222 21 24677899999999888888888888888776
No 313
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.20 E-value=0.00014 Score=74.08 Aligned_cols=221 Identities=15% Similarity=0.107 Sum_probs=131.3
Q ss_pred CCCCceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCC
Q 004067 520 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 599 (776)
Q Consensus 520 ~~~~~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~ 599 (776)
.++..|.+++.. ++.+ .-.+|+|.... ++..+||++||...+. .|......+...|.+.|++++++-.+.-
T Consensus 58 ~lp~~e~~~L~~-~~~~-flaL~~~~~~~---~~~G~vIilp~~g~~~----d~p~~i~~LR~~L~~~GW~Tlsit~P~~ 128 (310)
T PF12048_consen 58 YLPADEVQWLQA-GEER-FLALWRPANSA---KPQGAVIILPDWGEHP----DWPGLIAPLRRELPDHGWATLSITLPDP 128 (310)
T ss_pred hCCHhhcEEeec-CCEE-EEEEEecccCC---CCceEEEEecCCCCCC----CcHhHHHHHHHHhhhcCceEEEecCCCc
Confidence 354566677776 4443 44455665432 5678999999965543 3544555667788999999999987751
Q ss_pred CCC-chhh---------------hh-------------hhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHH
Q 004067 600 ARR-GLKF---------------EA-------------SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 650 (776)
Q Consensus 600 g~~-~~~~---------------~~-------------~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~ 650 (776)
-.. ...+ .. ............-+.+++.++.+++ ..+|+|+||+.|++
T Consensus 129 ~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~ 205 (310)
T PF12048_consen 129 APPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAG 205 (310)
T ss_pred ccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHH
Confidence 100 0000 00 0000000011333556666666654 24599999999999
Q ss_pred HHHHHHhhCCC-ceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHH
Q 004067 651 LSAITLARFPD-VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 729 (776)
Q Consensus 651 ~a~~~a~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 729 (776)
+++.+....+. .+.+.|++++...-. .........+.+++.|+|=|+... .......+
T Consensus 206 ~~~~~la~~~~~~~daLV~I~a~~p~~--------------------~~n~~l~~~la~l~iPvLDi~~~~-~~~~~~~a 264 (310)
T PF12048_consen 206 WAARYLAEKPPPMPDALVLINAYWPQP--------------------DRNPALAEQLAQLKIPVLDIYSAD-NPASQQTA 264 (310)
T ss_pred HHHHHHhcCCCcccCeEEEEeCCCCcc--------------------hhhhhHHHHhhccCCCEEEEecCC-ChHHHHHH
Confidence 99999998754 478888887753211 001233456788899999999877 32222222
Q ss_pred HHHHHHHHH-CCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 004067 730 ARLINALVA-ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 775 (776)
Q Consensus 730 ~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 775 (776)
..=....++ ....++.+.+++..|.... ....+.++|..||.++
T Consensus 265 ~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 265 KQRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 221222222 2346777777777775422 2233889999999876
No 314
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.20 E-value=0.00021 Score=65.68 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=120.9
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
|+++...+.|-|..+++ .+.+...+++||.++|+. |++-.| ...++...|
T Consensus 59 G~EVlD~~~s~Dnskf~-----s~GgDk~v~vwDV~TGkv~Rr~rgH------------------------~aqVNtV~f 109 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFA-----SCGGDKAVQVWDVNTGKVDRRFRGH------------------------LAQVNTVRF 109 (307)
T ss_pred Cceeeeccccccccccc-----cCCCCceEEEEEcccCeeeeecccc------------------------cceeeEEEe
Confidence 46678888999999998 444467899999999987 333332 346888899
Q ss_pred eecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCC--CccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCC
Q 004067 133 VKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCS--PVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 133 sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~--~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~ 209 (776)
.. +..-++.. -+..+.+||-.+.... ++...... .+..+..+ +...++=..++.+..+|+..|+.. .+-
T Consensus 110 Ne---esSVv~SgsfD~s~r~wDCRS~s~e-PiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~---sDy 181 (307)
T KOG0316|consen 110 NE---ESSVVASGSFDSSVRLWDCRSRSFE-PIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLS---SDY 181 (307)
T ss_pred cC---cceEEEeccccceeEEEEcccCCCC-ccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceee---hhh
Confidence 87 66555443 5678999998776555 32221111 13333332 222222233566777777666532 211
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
- |.+ +..+.+|+||+-.+..+.+ ..|++
T Consensus 182 ~------g~p----------it~vs~s~d~nc~La~~l~------------------------------------stlrL 209 (307)
T KOG0316|consen 182 F------GHP----------ITSVSFSKDGNCSLASSLD------------------------------------STLRL 209 (307)
T ss_pred c------CCc----------ceeEEecCCCCEEEEeecc------------------------------------ceeee
Confidence 1 111 5678899999988766643 45788
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
.|-++|++-..-.. -....+-.+..++.....++..+ .++.+|.||+..+..-
T Consensus 210 lDk~tGklL~sYkG------hkn~eykldc~l~qsdthV~sgS----EDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 210 LDKETGKLLKSYKG------HKNMEYKLDCCLNQSDTHVFSGS----EDGKVYFWDLVDETQI 262 (307)
T ss_pred cccchhHHHHHhcc------cccceeeeeeeecccceeEEecc----CCceEEEEEeccceee
Confidence 89888875433111 12223444556665554554443 5667899998765543
No 315
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.20 E-value=0.00079 Score=80.39 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=132.2
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.|..+++++||..|++.... ...|.++|+.++..+.+......+. .... +... .......-..+.++|
T Consensus 625 ~P~GIavd~~gn~LYVaDt~----n~~Ir~id~~~~~V~tlag~G~~g~---~~~g-g~~~---~~~~ln~P~gVa~dp- 692 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTE----NHALREIDFVNETVRTLAGNGTKGS---DYQG-GKKG---TSQVLNSPWDVCFEP- 692 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCC----CceEEEEecCCCEEEEEeccCcccC---CCCC-Chhh---hHhhcCCCeEEEEec-
Confidence 36888899998877654432 2468999998888776653211000 0000 0000 000012234678898
Q ss_pred CCCceEEEEe--CCCcEEEEeCCCCccceecCCC--------------CCCCccCceeCCCCCEEEEEEC--CcEEEEec
Q 004067 136 SSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSS--------------SCSPVIDPHLSSDGTMIAFVRD--CELHVLNL 197 (776)
Q Consensus 136 ~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~--------------~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l 197 (776)
++..|+++ .+..|+++|..++... .+... .......++++|||+.|.+... +.|.++++
T Consensus 693 --~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~ 769 (1057)
T PLN02919 693 --VNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL 769 (1057)
T ss_pred --CCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 88888877 4567999998877654 32110 0011345789999997655543 57999999
Q ss_pred CCCceeEEeeCCCCCceecCCccc------ceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcc
Q 004067 198 LINEQRQLTHGANGNTVTHGLAEY------IAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE 271 (776)
Q Consensus 198 ~~g~~~~lt~~~~~~~~~~~~~~~------~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776)
+++..+.+...... .......+ ..+..+....+++++|||+ | |+.....
T Consensus 770 ~tg~~~~~~gg~~~--~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L-YVADs~N--------------------- 824 (1057)
T PLN02919 770 KTGGSRLLAGGDPT--FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I-YVADSYN--------------------- 824 (1057)
T ss_pred CCCcEEEEEecccc--cCcccccccCCCCchhhhhccCCceeeEeCCCc-E-EEEECCC---------------------
Confidence 98876544321100 00000000 0001112234778899987 4 4442111
Q ss_pred eecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCC------CCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEE
Q 004067 272 DHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT------DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 345 (776)
Q Consensus 272 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 345 (776)
..|.+||.+++....+.-. |.+ ...........+++++||+ ++++ +. .+..|.++|
T Consensus 825 -------------~rIrviD~~tg~v~tiaG~-G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa-Dt--~Nn~Irvid 886 (1057)
T PLN02919 825 -------------HKIKKLDPATKRVTTLAGT-GKAGFKDGKALKAQLSEPAGLALGENGR-LFVA-DT--NNSLIRYLD 886 (1057)
T ss_pred -------------CEEEEEECCCCeEEEEecc-CCcCCCCCcccccccCCceEEEEeCCCC-EEEE-EC--CCCEEEEEE
Confidence 4578899988887665321 110 0011122445789999997 3333 32 345699999
Q ss_pred CCCCce
Q 004067 346 IKTGQR 351 (776)
Q Consensus 346 ~~~g~~ 351 (776)
+++++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 999876
No 316
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=0.00098 Score=70.62 Aligned_cols=227 Identities=15% Similarity=0.085 Sum_probs=141.1
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCce
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQ 202 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~ 202 (776)
.++.++++|. ++++||.. .++.|=+|++..+--. ..+..++...+....|++.|+..-.-.++.|-.||+.+++.
T Consensus 26 s~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 26 SEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred cceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence 4677889998 99999988 6788999999886433 24555555568899999655543333456899999998876
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASN 282 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 282 (776)
+.--... |.+ +.+++.+|-++.++....+
T Consensus 103 ~~~~d~~-------gg~----------IWsiai~p~~~~l~Igcdd---------------------------------- 131 (691)
T KOG2048|consen 103 KYNIDSN-------GGA----------IWSIAINPENTILAIGCDD---------------------------------- 131 (691)
T ss_pred eEEecCC-------Ccc----------eeEEEeCCccceEEeecCC----------------------------------
Confidence 5432211 122 3356677888777765433
Q ss_pred CeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc---
Q 004067 283 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL--- 359 (776)
Q Consensus 283 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--- 359 (776)
..++.++...+++.--.. +......+..++|.|+|..|+..+ -++-|..||..++..-.+..-..
T Consensus 132 --Gvl~~~s~~p~~I~~~r~------l~rq~sRvLslsw~~~~~~i~~Gs----~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 132 --GVLYDFSIGPDKITYKRS------LMRQKSRVLSLSWNPTGTKIAGGS----IDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred --ceEEEEecCCceEEEEee------cccccceEEEEEecCCccEEEecc----cCceEEEEEcCCCceEEEeeeccccc
Confidence 124555555554432211 123346788999999998887766 46679999998877544322111
Q ss_pred ------CceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEE
Q 004067 360 ------DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 360 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
-.|... ...++.+...+..| .+-.||...+..-+ ..-++.+|..+. .++++..++..+
T Consensus 200 ~k~~~~iVWSv~------------~Lrd~tI~sgDS~G--~V~FWd~~~gTLiqS~~~h~adVl~La-v~~~~d~vfsaG 264 (691)
T KOG2048|consen 200 SKREPTIVWSVL------------FLRDSTIASGDSAG--TVTFWDSIFGTLIQSHSCHDADVLALA-VADNEDRVFSAG 264 (691)
T ss_pred ccCCceEEEEEE------------EeecCcEEEecCCc--eEEEEcccCcchhhhhhhhhcceeEEE-EcCCCCeEEEcc
Confidence 144322 11233455566677 89999987765433 333455566554 666666544443
No 317
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.16 E-value=2.1e-05 Score=81.77 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=100.0
Q ss_pred CcCCCceeEcC-CCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 54 YVAPTSIGFSP-DDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 54 ~~~~~~~~~Sp-DG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
|..++.+.|.| |-++||...+.. .-+||.+...+... ..+..+. -| ..+...|.+..|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg---~i~lWr~~a~gl~e-~~~tPe~------~l-----------t~h~eKI~slRf 685 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG---QINLWRLTANGLPE-NEMTPEK------IL-----------TIHGEKITSLRF 685 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc---eEEEEEeccCCCCc-ccCCcce------ee-----------ecccceEEEEEe
Confidence 44568899999 889999655432 23555555554432 1111000 00 112356888999
Q ss_pred eecCCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCC
Q 004067 133 VKTSSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 133 sp~~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~ 210 (776)
.|.-. ..|+. ..+..|-+||+.+++....|..+.. .+..++|||||+++|-+. ++.|++++...++...- ....
T Consensus 686 HPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~g 761 (1012)
T KOG1445|consen 686 HPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKG 761 (1012)
T ss_pred cchhh--hHhhhhhccceeeeeehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCC
Confidence 98111 11121 2678899999999988866665554 489999999999999986 56899999987765432 2111
Q ss_pred CCceecCCcccceecccCCcceEEECCCCCeEEEEEecCC
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSS 250 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 250 (776)
. .| .|-..+.|.=||+.|+....+..
T Consensus 762 p----vg----------tRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 762 P----VG----------TRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred C----cc----------CcceeEEEEecCcEEEEeccccc
Confidence 0 00 12346789999999888776543
No 318
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.15 E-value=7.2e-05 Score=80.69 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=124.7
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeec-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFS-PPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
+.+.+..|+=|. .+|+.... +.|-++|...|-.+.-+. .+. +...+...+...
T Consensus 450 ~~~av~vs~CGN-F~~IG~S~----G~Id~fNmQSGi~r~sf~~~~a---------------------h~~~V~gla~D~ 503 (910)
T KOG1539|consen 450 NATAVCVSFCGN-FVFIGYSK----GTIDRFNMQSGIHRKSFGDSPA---------------------HKGEVTGLAVDG 503 (910)
T ss_pred ceEEEEEeccCc-eEEEeccC----CeEEEEEcccCeeecccccCcc---------------------ccCceeEEEecC
Confidence 346777788887 45554444 469999999887654441 111 123466665554
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
-++.++.+ .+|.+..||..++.....+.-+. .+..+..+.....+|...+ ..|.++|..+-.+.+...+..
T Consensus 504 ---~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~--~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-- 576 (910)
T KOG1539|consen 504 ---TNRLLVSAGADGILKFWDFKKKVLKKSLRLGS--SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-- 576 (910)
T ss_pred ---CCceEEEccCcceEEEEecCCcceeeeeccCC--CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc--
Confidence 44445544 67889999998877552332222 2444555655555555543 368888887765543322211
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
.++.++.||||||+|+.++.| ..|++||+
T Consensus 577 ---------------nritd~~FS~DgrWlisasmD------------------------------------~tIr~wDl 605 (910)
T KOG1539|consen 577 ---------------NRITDMTFSPDGRWLISASMD------------------------------------STIRTWDL 605 (910)
T ss_pred ---------------cceeeeEeCCCCcEEEEeecC------------------------------------CcEEEEec
Confidence 126689999999999988765 45899999
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
-++...-. ...+.....++|||+|.+|+.++. +...||+|.-
T Consensus 606 pt~~lID~---------~~vd~~~~sls~SPngD~LAT~Hv---d~~gIylWsN 647 (910)
T KOG1539|consen 606 PTGTLIDG---------LLVDSPCTSLSFSPNGDFLATVHV---DQNGIYLWSN 647 (910)
T ss_pred cCcceeee---------EecCCcceeeEECCCCCEEEEEEe---cCceEEEEEc
Confidence 99875432 223345678999999999888764 3345899863
No 319
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.15 E-value=0.0062 Score=61.00 Aligned_cols=273 Identities=12% Similarity=0.018 Sum_probs=136.2
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-----------CCCc
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-----------LPDG 149 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-----------~~~~ 149 (776)
..+|++|.+.++..-.+. ..-...+..|| ||+.++.. +..-
T Consensus 17 ~rv~viD~d~~k~lGmi~-------------------------~g~~~~~~~sp---dgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-------------------------TGFLGNVALSP---DGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-------------------------EESSEEEEE-T---TSSEEEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEECCCCcEEEEee-------------------------cccCCceeECC---CCCEEEEEEEEEeccccccceeE
Confidence 479999998887643332 01123567888 99999975 1223
Q ss_pred EEEEeCCCCccce--ecCCCC----CCCccCceeCCCCCEEEEEEC---CcEEEEecCCCceeEEeeCCCCCceecCCcc
Q 004067 150 IYFQDLSCSKPEL--KLSSSS----CSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINEQRQLTHGANGNTVTHGLAE 220 (776)
Q Consensus 150 l~~~d~~~~~~~~--~l~~~~----~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~ 220 (776)
|-+||..+=..+. .|...+ .......++|.||+.+++..- .-+-++|++.++...-...+....++.
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP---- 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP---- 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEE----
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEe----
Confidence 6788988764442 333221 112456799999997655432 359999999988766555554321111
Q ss_pred cceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEE
Q 004067 221 YIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM 300 (776)
Q Consensus 221 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l 300 (776)
+.++ .......|.+ ..-..+|.+++...+.
T Consensus 145 --------------~~~~--~F~~lC~DGs----------------------------------l~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 145 --------------SGNR--GFSMLCGDGS----------------------------------LLTVTLDADGKEAQKS 174 (342)
T ss_dssp --------------EETT--EEEEEETTSC----------------------------------EEEEEETSTSSEEEEE
T ss_pred --------------cCCC--ceEEEecCCc----------------------------------eEEEEECCCCCEeEee
Confidence 2222 1222221111 1112222222222111
Q ss_pred EcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCc-cc-
Q 004067 301 DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGV-TK- 378 (776)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~- 378 (776)
+. ......+.....+.++.++..++|.+ -.+.||..|+.+...+..-.-.-..-.+....|.|.++.+ +.
T Consensus 175 t~----~F~~~~dp~f~~~~~~~~~~~~~F~S----y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 175 TK----VFDPDDDPLFEHPAYSRDGGRLYFVS----YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp EE----ESSTTTS-B-S--EEETTTTEEEEEB----TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred cc----ccCCCCcccccccceECCCCeEEEEe----cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence 10 00112223444667777665666666 4556899998777654432211000001123456766652 22
Q ss_pred -cCCeEEEEecc-------CCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 379 -YSGGFIWASEK-------TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 379 -~~~~~~~~s~~-------~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
..+.+|..-.. ++...||.+|+.+++ .+++.-. ..+.++ ..|.|.+=++|..+... ..|+..+..
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si-~Vsqd~~P~L~~~~~~~---~~l~v~D~~ 320 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSI-AVSQDDKPLLYALSAGD---GTLDVYDAA 320 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEE-EEESSSS-EEEEEETTT---TEEEEEETT
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceE-EEccCCCcEEEEEcCCC---CeEEEEeCc
Confidence 23344443322 345799999998876 3444432 223344 37888876666544322 357777764
No 320
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.0012 Score=68.43 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=158.8
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-----------CcEEEE
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-----------CELHVL 195 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-----------~~l~~~ 195 (776)
...+.+|+ +|+.+++..+..+.+.+...++. .++.... ....+.|||-|.+|.--.. -++-++
T Consensus 37 ~~v~~~S~---~G~lfA~~~~~~v~i~~~~~~~~--~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 37 CNVFAYSN---NGRLFAYSDNQVVKVFEIATLKV--VLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred ceeEEEcC---CCcEEEEEcCCeEEEEEccCCcE--EEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 45677888 99999999999999999888864 3444333 4788999999998764431 247777
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
+++++..+--..... -.+| .+.||+|....++...
T Consensus 111 ~vet~~~~s~~q~k~-------Q~~W----------~~qfs~dEsl~arlv~---------------------------- 145 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKM-------QNGW----------VPQFSIDESLAARLVS---------------------------- 145 (566)
T ss_pred eeccceehhheehhh-------hcCc----------ccccccchhhhhhhhc----------------------------
Confidence 777743221111110 0113 3568888875554332
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe---EEEEEEeecCceEEEEEEECC-CCce
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI---LTAQVLNRSQTKLKVLKFDIK-TGQR 351 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~---~l~~~~~~~~~~~~l~~~d~~-~g~~ 351 (776)
.+++.+++.+-+...- .-+...+..+.+||-+. +.+++-........+.+|-.- .+..
T Consensus 146 ---------nev~f~~~~~f~~~~~---------kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 146 ---------NEVQFYDLGSFKTIQH---------KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred ---------ceEEEEecCCccceee---------eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 4567777776332221 11234677888999754 333443333333334444332 1222
Q ss_pred EEEEEeccCceeecccccccCCCCcccc--CCeEE-E-EeccC-------CceEEEEEeCCCcee-eccccCCeEEEEEE
Q 004067 352 KVILVEELDSWVNLHDCFTPLDKGVTKY--SGGFI-W-ASEKT-------GFRHLYLHDINGTCL-GPITEGDWMVEQIV 419 (776)
Q Consensus 352 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~s~~~-------g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~ 419 (776)
..+.. .. + |.-..-.+.|. +..++ . +++-+ |.+.||+++.+|... .+|+. ...|-.+.
T Consensus 208 ~~~a~-ks--F------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~ 277 (566)
T KOG2315|consen 208 QPVAN-KS--F------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVT 277 (566)
T ss_pred chhhh-cc--c------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEE
Confidence 22211 10 0 00000001222 22232 2 23222 457999999885443 34443 33444554
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
|+++|+...+.... .|....||.++ |+ +.--...+.-+.+-|+|.|+.|++.--+. -++.+-+||..+
T Consensus 278 -W~~s~~EF~VvyGf-MPAkvtifnlr----~~-----~v~df~egpRN~~~fnp~g~ii~lAGFGN-L~G~mEvwDv~n 345 (566)
T KOG2315|consen 278 -WSPSGREFAVVYGF-MPAKVTIFNLR----GK-----PVFDFPEGPRNTAFFNPHGNIILLAGFGN-LPGDMEVWDVPN 345 (566)
T ss_pred -ECCCCCEEEEEEec-ccceEEEEcCC----CC-----EeEeCCCCCccceEECCCCCEEEEeecCC-CCCceEEEeccc
Confidence 99999886666543 45445665554 32 33333333346789999999988875554 567888899866
Q ss_pred Cc
Q 004067 500 GS 501 (776)
Q Consensus 500 ~~ 501 (776)
-+
T Consensus 346 ~K 347 (566)
T KOG2315|consen 346 RK 347 (566)
T ss_pred hh
Confidence 43
No 321
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.14 E-value=0.0025 Score=61.05 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCeeeEEEeecCCCceEEE--EeCCCcEEEEeCCCC-ccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIM--VPLPDGIYFQDLSCS-KPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~--~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g 200 (776)
..|..++||| ....++ -+.++++.+|+++.. ....+......+.+....||-||.+++... +.++-+|||++|
T Consensus 28 DsIS~l~FSP---~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 28 DSISALAFSP---QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cchheeEecc---ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4678899999 555444 347899999998763 333111111223578899999997654443 568999999999
Q ss_pred ceeEEeeCC
Q 004067 201 EQRQLTHGA 209 (776)
Q Consensus 201 ~~~~lt~~~ 209 (776)
+..++-...
T Consensus 105 Q~~~v~~Hd 113 (347)
T KOG0647|consen 105 QVSQVAAHD 113 (347)
T ss_pred Ceeeeeecc
Confidence 998886543
No 322
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0054 Score=67.26 Aligned_cols=312 Identities=13% Similarity=0.056 Sum_probs=169.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
++.+.|.|++-.. ++.++ .-.|.+|+-++.+. -+|..| -.-+....|.+
T Consensus 54 VRgv~FH~~qplF--VSGGD---DykIkVWnYk~rrclftL~GH------------------------lDYVRt~~FHh- 103 (1202)
T KOG0292|consen 54 VRGVDFHPTQPLF--VSGGD---DYKIKVWNYKTRRCLFTLLGH------------------------LDYVRTVFFHH- 103 (1202)
T ss_pred cceeeecCCCCeE--EecCC---ccEEEEEecccceehhhhccc------------------------cceeEEeeccC-
Confidence 5889999998754 44433 35788888876543 223322 13467788888
Q ss_pred CCCceEEEEeC-CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC-
Q 004067 136 SSKKKIIMVPL-PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN- 212 (776)
Q Consensus 136 ~~dg~~l~~~~-~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~- 212 (776)
.--+|+... |.+|.+|+-.+++....||.+.. .+...+|.|....|+..+-. .|.+||..+=..+.....+-.+
T Consensus 104 --eyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~ 180 (1202)
T KOG0292|consen 104 --EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ 180 (1202)
T ss_pred --CCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh
Confidence 777888875 45699999999998856665543 58889999988888887754 5899998754433332221000
Q ss_pred --------cee---cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 213 --------TVT---HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 213 --------~~~---~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
... ..+..++-+.+-..++..+|.|----|+..+ |+
T Consensus 181 ~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~-DD-------------------------------- 227 (1202)
T KOG0292|consen 181 MRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA-DD-------------------------------- 227 (1202)
T ss_pred hhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC-Cc--------------------------------
Confidence 000 0111111111112233444555443333222 22
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELD 360 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~ 360 (776)
.++.+|-.+..+...+++= .++.+.+..+-|.|.-..|+..+ .+..|.+||++....-... .+++.
T Consensus 228 ---RqVKlWrmnetKaWEvDtc------rgH~nnVssvlfhp~q~lIlSns----EDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 228 ---RQVKLWRMNETKAWEVDTC------RGHYNNVSSVLFHPHQDLILSNS----EDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred ---ceeeEEEeccccceeehhh------hcccCCcceEEecCccceeEecC----CCccEEEEecccccceeeeeccCCe
Confidence 3345555544444444432 57778889999999766665544 4667999999765543333 23333
Q ss_pred ceeec-ccccccCCCCccccCCeEEEEeccC-------C-------ceEEEEEeCCCceee---ccccCC---eEEEEEE
Q 004067 361 SWVNL-HDCFTPLDKGVTKYSGGFIWASEKT-------G-------FRHLYLHDINGTCLG---PITEGD---WMVEQIV 419 (776)
Q Consensus 361 ~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~-------g-------~~~l~~~~~~g~~~~---~lt~~~---~~~~~~~ 419 (776)
-|... .+...-. ....|+|=++|--++. + ...|+.+|+.+.+-. +|-... ..+.+.
T Consensus 295 FW~laahP~lNLf--AAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sm- 371 (1202)
T KOG0292|consen 295 FWILAAHPELNLF--AAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSL- 371 (1202)
T ss_pred EEEEEecCCccee--eeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCccee-
Confidence 44322 1111000 0122333344433321 1 136667776654322 222221 223333
Q ss_pred eecCCCcEEEEEEccCCCceeeEEEEEeCCCC
Q 004067 420 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 451 (776)
Q Consensus 420 ~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g 451 (776)
+++|..+.++..++.++ ....|+.+.-+.+|
T Consensus 372 sYNpae~~vlics~~~n-~~y~L~~ipk~~~~ 402 (1202)
T KOG0292|consen 372 SYNPAENAVLICSNLDN-GEYELVQIPKDSDG 402 (1202)
T ss_pred eeccccCeEEEEeccCC-CeEEEEEecCcccc
Confidence 47888777777765544 34678877653333
No 323
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.12 E-value=0.00099 Score=65.53 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=95.0
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCC--ccCceeCCCCCEEEEEEC---CcEEEEecCCC
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSP--VIDPHLSSDGTMIAFVRD---CELHVLNLLIN 200 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~--~~~~~~SpDg~~la~~~~---~~l~~~~l~~g 200 (776)
.+.++.. +-++|++....+||++|+..=+..-.+...+... .-...+++++-+|||-.. ++|+++|+.+=
T Consensus 89 ~IL~Vrm-----Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 89 SILAVRM-----NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEE-----ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 4555555 4577888877889999998755431232221111 334455556669999864 58999998764
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+..-...-..+ ....++|||||..||.++..+
T Consensus 164 ~~v~~I~aH~~-----------------~lAalafs~~G~llATASeKG------------------------------- 195 (391)
T KOG2110|consen 164 QPVNTINAHKG-----------------PLAALAFSPDGTLLATASEKG------------------------------- 195 (391)
T ss_pred eeeeEEEecCC-----------------ceeEEEECCCCCEEEEeccCc-------------------------------
Confidence 43322222211 145789999999999877432
Q ss_pred CCCeEEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 281 SNVKVRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
.-|+|+.+.+|+. ..+.-. .. ...++.++||||+++|..+++. ..|.++-++
T Consensus 196 ----TVIRVf~v~~G~kl~eFRRG------~~-~~~IySL~Fs~ds~~L~~sS~T----eTVHiFKL~ 248 (391)
T KOG2110|consen 196 ----TVIRVFSVPEGQKLYEFRRG------TY-PVSIYSLSFSPDSQFLAASSNT----ETVHIFKLE 248 (391)
T ss_pred ----eEEEEEEcCCccEeeeeeCC------ce-eeEEEEEEECCCCCeEEEecCC----CeEEEEEec
Confidence 3477777776653 333221 11 3568899999999987776643 334444443
No 324
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.06 E-value=0.00093 Score=65.73 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCeeeEEEeecCCCceEEEEe---CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP---LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~---~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~ 199 (776)
.|+.+++.++ .+.+|+|. ..++|+++|+.+-+....+..+++ .+..++|||||..||-.++. -|.++.+.+
T Consensus 130 ~gl~AlS~n~---~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 130 KGLCALSPNN---ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred cceEeeccCC---CCceEEecCCCCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCC
Confidence 4677777777 88899997 557899999988776645555554 48889999999999999875 377778877
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQG 261 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 261 (776)
|+...-...+. .... +.+++||||++.|+..+ +.+.++.+.+....
T Consensus 206 G~kl~eFRRG~---~~~~------------IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGT---YPVS------------IYSLSFSPDSQFLAASS-NTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCc---eeeE------------EEEEEECCCCCeEEEec-CCCeEEEEEecccc
Confidence 76533222221 1221 44789999999887655 55566666665443
No 325
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.0065 Score=58.53 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=59.5
Q ss_pred CCeeeEEEeecCCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee
Q 004067 125 LGVTRYEWVKTSSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR 203 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~ 203 (776)
.+|.++.|+| .+..|+. ..++.|-++|+...+.++.+... ..+..-.|.++.+.+.-..+++|.++|+.+++..
T Consensus 14 d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~~~--~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFKHG--APLLDCAFADESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhheecC--CceeeeeccCCceEEEeccCceEEEEEecCCcce
Confidence 4788999997 6666655 48999999999988777334332 2477788888766555556789999999999988
Q ss_pred EEeeCCC
Q 004067 204 QLTHGAN 210 (776)
Q Consensus 204 ~lt~~~~ 210 (776)
++-....
T Consensus 89 ~igth~~ 95 (323)
T KOG1036|consen 89 QIGTHDE 95 (323)
T ss_pred eeccCCC
Confidence 8755443
No 326
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.0057 Score=55.86 Aligned_cols=168 Identities=17% Similarity=0.233 Sum_probs=98.0
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce----EEEEEeccC----ceeecccccccCCCCccccCC
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR----KVILVEELD----SWVNLHDCFTPLDKGVTKYSG 381 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 381 (776)
..+.+.++..+|||+|+.|+..+|.. .-.+..++.++... -.+.-+.+. .+.+. ...+
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk--~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------~~s~ 151 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDK--TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------PESG 151 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCc--eEEEEecccccccccCcceeeeecCCceeeeEEecC------------CCcC
Confidence 34667899999999999887665322 22333344333211 111111111 22211 1134
Q ss_pred eEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccccee
Q 004067 382 GFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 460 (776)
Q Consensus 382 ~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 460 (776)
+-+.+|...|.-+||+.|-..| ....+..+...+..+..|+ ..++.+.+.+.+ +..|.+..+. -+..
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn---~~m~~sgsqdkt--irfwdlrv~~-------~v~~ 219 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN---GAMFASGSQDKT--IRFWDLRVNS-------CVNT 219 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec---CcEEEccCCCce--EEEEeeeccc-------eeee
Confidence 4566677778889999996544 4566777777777776664 335666555544 7888887631 2222
Q ss_pred ecCC---C-----CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 461 LTNG---K-----GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 461 l~~~---~-----~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
|.+. . .+..+.+.|.|+-|+..... ..-+++|...|..++...
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~d----ssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD----SSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCC----CceEEEEeeCCceeeeeC
Confidence 2211 1 24567999999988766543 236677887887666554
No 327
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.0038 Score=60.05 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=80.6
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+++++|||.++.|.-.+ ++| .|.+++....+.++...+. ..+..-.|.+
T Consensus 16 IS~v~f~~~~~~LLvss-WDg----slrlYdv~~~~l~~~~~~~------------------------~plL~c~F~d-- 64 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSS-WDG----SLRLYDVPANSLKLKFKHG------------------------APLLDCAFAD-- 64 (323)
T ss_pred eeeEEEcCcCCcEEEEe-ccC----cEEEEeccchhhhhheecC------------------------CceeeeeccC--
Confidence 48999999999887544 554 4889998888776666543 3567778887
Q ss_pred CCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEECCcEEEEecCC
Q 004067 137 SKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRDCELHVLNLLI 199 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~~~l~~~~l~~ 199 (776)
+.+-+.-..++.|.++|+.+++.. .+-.+... +..+.+++ +|..|+=..+..|-+||.-.
T Consensus 65 -~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~-i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 65 -ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEG-IRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred -CceEEEeccCceEEEEEecCCcce-eeccCCCc-eEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 666555568999999999999988 66655554 77888887 55555555577788888765
No 328
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.0009 Score=67.60 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=84.0
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+|.|-|+++.|.|..-.. ..|+.+++++|+.+...... .+.....--
T Consensus 28 EgP~w~~~~~~L~w~DI~~----~~i~r~~~~~g~~~~~~~p~-------------------------~~~~~~~~d--- 75 (307)
T COG3386 28 EGPVWDPDRGALLWVDILG----GRIHRLDPETGKKRVFPSPG-------------------------GFSSGALID--- 75 (307)
T ss_pred cCccCcCCCCEEEEEeCCC----CeEEEecCCcCceEEEECCC-------------------------Ccccceeec---
Confidence 6888999999999886544 47999999988766655321 222222222
Q ss_pred CceEEEEeCCCcEEEEeCCCCcc-ceecCCCCC----CCccCceeCCCCCEEEEEECC-------------cEEEEecCC
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKP-ELKLSSSSC----SPVIDPHLSSDGTMIAFVRDC-------------ELHVLNLLI 199 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~-~~~l~~~~~----~~~~~~~~SpDg~~la~~~~~-------------~l~~~~l~~ 199 (776)
++.+| +.....+++++.+.+.. + .+...+. .+.......|||.. .|.... .||.+++.+
T Consensus 76 ~~g~L-v~~~~g~~~~~~~~~~~~t-~~~~~~~~~~~~r~ND~~v~pdG~~-wfgt~~~~~~~~~~~~~~G~lyr~~p~g 152 (307)
T COG3386 76 AGGRL-IACEHGVRLLDPDTGGKIT-LLAEPEDGLPLNRPNDGVVDPDGRI-WFGDMGYFDLGKSEERPTGSLYRVDPDG 152 (307)
T ss_pred CCCeE-EEEccccEEEeccCCceeE-EeccccCCCCcCCCCceeEcCCCCE-EEeCCCccccCccccCCcceEEEEcCCC
Confidence 33333 33345567777776666 4 4433221 23445678889874 444332 389999865
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+.++++...-. + .++++|||||+.+++.-.
T Consensus 153 ~~~~l~~~~~~---~---------------~NGla~SpDg~tly~aDT 182 (307)
T COG3386 153 GVVRLLDDDLT---I---------------PNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CEEEeecCcEE---e---------------cCceEECCCCCEEEEEeC
Confidence 55555533111 1 347889999998877543
No 329
>COG3150 Predicted esterase [General function prediction only]
Probab=98.02 E-value=0.00012 Score=63.85 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCC--Cccch
Q 004067 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE--DPVGY 697 (776)
Q Consensus 620 ~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 697 (776)
....+-++.++++.. + ..++|+|.|+||+.|.+++.++. +++++....+.....+. .|++.+.. ..+.|
T Consensus 43 ~~a~~ele~~i~~~~-~-~~p~ivGssLGGY~At~l~~~~G--irav~~NPav~P~e~l~-----gylg~~en~ytg~~y 113 (191)
T COG3150 43 QQALKELEKAVQELG-D-ESPLIVGSSLGGYYATWLGFLCG--IRAVVFNPAVRPYELLT-----GYLGRPENPYTGQEY 113 (191)
T ss_pred HHHHHHHHHHHHHcC-C-CCceEEeecchHHHHHHHHHHhC--ChhhhcCCCcCchhhhh-----hhcCCCCCCCCcceE
Confidence 344444555555432 2 34899999999999999999863 44544433332222221 12222220 01112
Q ss_pred h-cCC-----hhhhhccCCC-cEEEEecCC-CCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHH
Q 004067 698 E-YSS-----VMHHVHKMKG-KLLLVHGMI-DENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 769 (776)
Q Consensus 698 ~-~~~-----~~~~~~~i~~-P~lii~G~~-D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 769 (776)
. +.. ....+..++. ..+++.... |++.....+...+..+ ...+..+++|.|. .....++.+.
T Consensus 114 ~le~~hI~~l~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~---~f~~~l~~i~ 183 (191)
T COG3150 114 VLESRHIATLCVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFK---GFSRHLQRIK 183 (191)
T ss_pred EeehhhHHHHHHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCcccc---chHHhHHHHH
Confidence 1 000 0112233333 344444444 9988777666666544 5678888999874 4666778888
Q ss_pred HHHH
Q 004067 770 EFIE 773 (776)
Q Consensus 770 ~fl~ 773 (776)
.|..
T Consensus 184 aF~g 187 (191)
T COG3150 184 AFKG 187 (191)
T ss_pred HHhc
Confidence 8864
No 330
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.01 E-value=9e-05 Score=75.03 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=61.9
Q ss_pred hhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 579 ~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
.++.++.++|..|+.++.++-..+.. ...+.++..+.+..+++.+++... .++|-++|+|.||.++..+++.
T Consensus 130 s~V~~l~~~g~~vfvIsw~nPd~~~~------~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRNPDASLA------AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccCchHhhh------hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHh
Confidence 35789999999999999875432211 122222334667788888877642 3589999999999999999988
Q ss_pred CCCc-eEEEEEcCCCCC
Q 004067 659 FPDV-FQCAVSGAPVTS 674 (776)
Q Consensus 659 ~~~~-~~~~v~~~~~~~ 674 (776)
++.+ ++.+..+....|
T Consensus 202 ~~~k~I~S~T~lts~~D 218 (445)
T COG3243 202 MAAKRIKSLTLLTSPVD 218 (445)
T ss_pred hhhcccccceeeecchh
Confidence 8776 777666544433
No 331
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.00 E-value=0.00087 Score=68.89 Aligned_cols=170 Identities=10% Similarity=0.018 Sum_probs=91.5
Q ss_pred ceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCC
Q 004067 231 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 310 (776)
Q Consensus 231 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 310 (776)
..-+|+|||.-|+....| ..|.+|...+--..++ .
T Consensus 108 ~~gRW~~dGtgLlt~GED------------------------------------G~iKiWSrsGMLRStl---------~ 142 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED------------------------------------GVIKIWSRSGMLRSTV---------V 142 (737)
T ss_pred hhcccCCCCceeeeecCC------------------------------------ceEEEEeccchHHHHH---------h
Confidence 345699999998876533 3467777655433333 3
Q ss_pred CCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccC
Q 004067 311 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 390 (776)
Q Consensus 311 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (776)
.....++.++|.|++..++|... .++++-.+.-.....--...++.- ....|++ -+.++.+..++
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~g-----~h~~IKpL~~n~k~i~WkAHDGii--L~~~W~~--------~s~lI~sgGED 207 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQG-----GHISIKPLAANSKIIRWRAHDGLV--LSLSWST--------QSNIIASGGED 207 (737)
T ss_pred hcCceeEEEEECCCCCceEEecC-----CeEEEeecccccceeEEeccCcEE--EEeecCc--------cccceeecCCc
Confidence 44567899999999987877742 224433332221111111111100 0001111 11244433333
Q ss_pred CceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCCeEEE
Q 004067 391 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVA 470 (776)
Q Consensus 391 g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 470 (776)
-...+||.-|...-.-..++..+.++. |.|| + +|...+. +.-++.- +.-+.+..+
T Consensus 208 --~kfKvWD~~G~~Lf~S~~~ey~ITSva-~npd-~-~~~v~S~------nt~R~~~--------------p~~GSifnl 262 (737)
T KOG1524|consen 208 --FRFKIWDAQGANLFTSAAEEYAITSVA-FNPE-K-DYLLWSY------NTARFSS--------------PRVGSIFNL 262 (737)
T ss_pred --eeEEeecccCcccccCChhccceeeee-eccc-c-ceeeeee------eeeeecC--------------CCccceEEE
Confidence 366778877765544444566677765 8888 3 3443332 1111110 111246788
Q ss_pred EEcCCcCEEEEEeeC
Q 004067 471 VLDHNMRNFVDFHDS 485 (776)
Q Consensus 471 ~~spdg~~l~~~~~~ 485 (776)
+||+||++++..++.
T Consensus 263 sWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 263 SWSADGTQATCGTST 277 (737)
T ss_pred EEcCCCceeeccccC
Confidence 999999999887665
No 332
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.00 E-value=0.00084 Score=67.74 Aligned_cols=164 Identities=12% Similarity=0.025 Sum_probs=104.7
Q ss_pred CCCcceEEEEEeccCCeEEE-EEEeecCceEEEEEEECCCC--ceEEE-EEeccCceeecccccccCCCCccccCCeEEE
Q 004067 310 NYDEEYLARVNWMHGNILTA-QVLNRSQTKLKVLKFDIKTG--QRKVI-LVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 385 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~~g--~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (776)
..+...+.+++|.|-.+.++ ++. .+..|.+||+.++ +.+.. ..+..+.+.. .|.|. ++.++.
T Consensus 224 ~~h~~~VeDV~~h~~h~~lF~sv~----dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~---~fnp~-------~~~ilA 289 (422)
T KOG0264|consen 224 SGHEDVVEDVAWHPLHEDLFGSVG----DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV---AFNPF-------NEFILA 289 (422)
T ss_pred ecCCcceehhhccccchhhheeec----CCCeEEEEEcCCCCCCCcccccccCCceeEE---EeCCC-------CCceEE
Confidence 45677889999999776444 443 5667999999853 22222 2223333322 24342 233666
Q ss_pred EeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCc------ccc
Q 004067 386 ASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT------LEA 457 (776)
Q Consensus 386 ~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~------~~~ 457 (776)
+...++ .|++||+..-+ +..+..+...+..+. |||+.+.|+.++..++. +.+|++.- -|... .++
T Consensus 290 T~S~D~--tV~LwDlRnL~~~lh~~e~H~dev~~V~-WSPh~etvLASSg~D~r--l~vWDls~--ig~eq~~eda~dgp 362 (422)
T KOG0264|consen 290 TGSADK--TVALWDLRNLNKPLHTFEGHEDEVFQVE-WSPHNETVLASSGTDRR--LNVWDLSR--IGEEQSPEDAEDGP 362 (422)
T ss_pred eccCCC--cEEEeechhcccCceeccCCCcceEEEE-eCCCCCceeEecccCCc--EEEEeccc--cccccChhhhccCC
Confidence 666677 99999976543 445555666677665 99999999999887754 88888864 33311 123
Q ss_pred ceeecCCCC----eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 458 PVKLTNGKG----KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 458 ~~~l~~~~~----~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
+..|..++| +..++|.|...+++...+..+ .+.+|..
T Consensus 363 pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN---~LqIW~~ 403 (422)
T KOG0264|consen 363 PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN---ILQIWQM 403 (422)
T ss_pred cceeEEecCcccccccccCCCCCCeEEEEecCCc---eEEEeec
Confidence 444554443 567799999998888877664 4555555
No 333
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.00 E-value=0.0011 Score=66.81 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=117.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCc--eE---------EeecCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCK--QE---------LVFSPPDGGLDENNISPEEKLRRERLRERGLG 126 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~--~~---------~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 126 (776)
..++--|....|.-.... ..+++++|...-. .. +|..|++ .
T Consensus 128 nRaRymPQnp~iVAt~t~----~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~------------------------e 179 (422)
T KOG0264|consen 128 NRARYMPQNPNIVATKTS----SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK------------------------E 179 (422)
T ss_pred hhhhhCCCCCcEEEecCC----CCCEEEEEeccCCCcccccccCCCceEEEeecc------------------------c
Confidence 566667777667654333 3578888876422 11 2333222 1
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccc------eecCCCCCCCccCceeCCC-CCEEEEEECC-cEEEEecC
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPE------LKLSSSSCSPVIDPHLSSD-GTMIAFVRDC-ELHVLNLL 198 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~------~~l~~~~~~~~~~~~~SpD-g~~la~~~~~-~l~~~~l~ 198 (776)
-.++.|++... |..|.-..+..|-+||+...... .....+....+...+|+|- ...++.+.++ .|.++|+.
T Consensus 180 g~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 180 GYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred ccccccccccc-eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 23467887322 44444457788999998764431 1222333345788999994 4456666654 59999988
Q ss_pred CC--ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 IN--EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g--~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
++ +......... ..+..++|+|-+..|+-....+
T Consensus 259 ~~~~~~~~~~~ah~-----------------~~vn~~~fnp~~~~ilAT~S~D--------------------------- 294 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHS-----------------AEVNCVAFNPFNEFILATGSAD--------------------------- 294 (422)
T ss_pred CCCCCCcccccccC-----------------CceeEEEeCCCCCceEEeccCC---------------------------
Confidence 64 1111111111 0145678999776665433211
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..|.+||+..=+.....+ ..+...+..+.|||..+.++..+. .+..+.+||+..
T Consensus 295 --------~tV~LwDlRnL~~~lh~~-------e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDls~ 348 (422)
T KOG0264|consen 295 --------KTVALWDLRNLNKPLHTF-------EGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDLSR 348 (422)
T ss_pred --------CcEEEeechhcccCceec-------cCCCcceEEEEeCCCCCceeEecc---cCCcEEEEeccc
Confidence 347888886544333322 567788999999999885554432 455688888854
No 334
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.96 E-value=0.0011 Score=66.88 Aligned_cols=177 Identities=9% Similarity=0.076 Sum_probs=108.4
Q ss_pred CCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEec-cCceeecccccccCCCCccccCCeEEEEe
Q 004067 310 NYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGGFIWAS 387 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 387 (776)
..+...+..+.|+|.+. .++..+ -++.|...|++++....+.... +..|... .. ++.+...++|..
T Consensus 231 ~~hs~~Vs~l~F~P~n~s~i~ssS----yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~------~d--~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 231 TPHSGPVSGLKFSPANTSQIYSSS----YDGTIRLQDFEGNISEEVLSLDTDNIWFSS------LD--FSAESRSVLFGD 298 (498)
T ss_pred ccCCccccceEecCCChhheeeec----cCceeeeeeecchhhHHHhhcCccceeeee------cc--ccCCCccEEEee
Confidence 45666788999999775 666655 4667999999988776665432 2334322 11 123334455544
Q ss_pred ccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCcccc--ceeecCCC
Q 004067 388 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA--PVKLTNGK 465 (776)
Q Consensus 388 ~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~--~~~l~~~~ 465 (776)
.-|..+++-...++.+...+.-+.-.+.++. +.|-..+++.+++-+++ ..||.+.-- .++ .. +..+....
T Consensus 299 -~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-~NP~~p~~laT~s~D~T--~kIWD~R~l-~~K---~sp~lst~~Hrr 370 (498)
T KOG4328|consen 299 -NVGNFNVIDLRTDGSEYENLRLHKKKITSVA-LNPVCPWFLATASLDQT--AKIWDLRQL-RGK---ASPFLSTLPHRR 370 (498)
T ss_pred -cccceEEEEeecCCccchhhhhhhcccceee-cCCCCchheeecccCcc--eeeeehhhh-cCC---CCcceecccccc
Confidence 3344455544455555555555555666664 88888888888877765 679987631 333 12 22233333
Q ss_pred CeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcC----CCceeEeeccCC
Q 004067 466 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ----DGSLVLPLYEQP 510 (776)
Q Consensus 466 ~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~----~~~~~~~l~~~~ 510 (776)
.+.++.|||+|-.|+.++.. .+|.++|.+ --.....+.+|.
T Consensus 371 sV~sAyFSPs~gtl~TT~~D----~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQD----NEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eeeeeEEcCCCCceEeeccC----CceEEeecccccccCCccceeeccC
Confidence 57889999998888877655 358888872 334444555543
No 335
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00058 Score=63.64 Aligned_cols=240 Identities=10% Similarity=0.067 Sum_probs=144.8
Q ss_pred eeeEEEeecCCCceEEEEe--------CCCcEEEEeCCCCccceecCCCC-CCCccCceeCCCCCEEEEEEC--CcEEEE
Q 004067 127 VTRYEWVKTSSKKKIIMVP--------LPDGIYFQDLSCSKPELKLSSSS-CSPVIDPHLSSDGTMIAFVRD--CELHVL 195 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--------~~~~l~~~d~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~la~~~~--~~l~~~ 195 (776)
-.+..|||... + +|+++ .++.||+.++..++......... ......++||+....++++.. +.|.++
T Consensus 11 GysvqfSPf~~-n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVE-N-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred cceeEeccccc-c-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 34677888443 3 34443 66889999996433321222211 112678999998777777654 457777
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE-ecCCCCCeEEEeecCCCCCCCCCcceec
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ-VDSSEIPRFRIMHQGKSSVGSEAQEDHA 274 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (776)
|+.- ....|.. .+|...-+.++-|++--+++...+ .|
T Consensus 89 d~~~-~s~Pi~~---------------~kEH~~EV~Svdwn~~~r~~~ltsSWD-------------------------- 126 (311)
T KOG0277|consen 89 DLTM-PSKPIHK---------------FKEHKREVYSVDWNTVRRRIFLTSSWD-------------------------- 126 (311)
T ss_pred ccCC-CCcchhH---------------HHhhhhheEEeccccccceeEEeeccC--------------------------
Confidence 7331 1111111 111111144566887666555444 22
Q ss_pred CCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCC-CceE
Q 004067 275 YPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKT-GQRK 352 (776)
Q Consensus 275 ~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~-g~~~ 352 (776)
..|.+|+.+-++...- ..++...++...|||-- ..++.++ .+..+.+||... |+..
T Consensus 127 ----------~TiKLW~~~r~~Sv~T--------f~gh~~~Iy~a~~sp~~~nlfas~S----gd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 127 ----------GTIKLWDPNRPNSVQT--------FNGHNSCIYQAAFSPHIPNLFASAS----GDGTLRLWDVRSPGKFM 184 (311)
T ss_pred ----------CceEeecCCCCcceEe--------ecCCccEEEEEecCCCCCCeEEEcc----CCceEEEEEecCCCcee
Confidence 3478888876654332 16788889999999954 4666665 566788888865 4444
Q ss_pred EEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecCCCcEEEE
Q 004067 353 VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYF 430 (776)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~dg~~i~~ 430 (776)
.+..+...+.. ..| +..+..+++++..++ .|+.||+..-. ...|..+...|+.+- |||...-|+.
T Consensus 185 ~i~ah~~Eil~---cdw-------~ky~~~vl~Tg~vd~--~vr~wDir~~r~pl~eL~gh~~AVRkvk-~Sph~~~lLa 251 (311)
T KOG0277|consen 185 SIEAHNSEILC---CDW-------SKYNHNVLATGGVDN--LVRGWDIRNLRTPLFELNGHGLAVRKVK-FSPHHASLLA 251 (311)
T ss_pred EEEeccceeEe---ecc-------cccCCcEEEecCCCc--eEEEEehhhccccceeecCCceEEEEEe-cCcchhhHhh
Confidence 44443323111 111 122345777776666 88999975432 345666778888775 9999988999
Q ss_pred EEccCCCceeeEEEEEe
Q 004067 431 TGTLDGPLESHLYCAKL 447 (776)
Q Consensus 431 ~~~~~~~~~~~l~~~~~ 447 (776)
+++.+.+ ..||+...
T Consensus 252 SasYDmT--~riw~~~~ 266 (311)
T KOG0277|consen 252 SASYDMT--VRIWDPER 266 (311)
T ss_pred hccccce--EEeccccc
Confidence 9998876 78887763
No 336
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0002 Score=71.55 Aligned_cols=153 Identities=10% Similarity=-0.032 Sum_probs=80.9
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCCCccccCCe-EEEEe
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWAS 387 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 387 (776)
..+...+.++.||||||.|+... .+ ...+|+.++|.. ...+. .+..|.-....|+-.. .... .++.+
T Consensus 183 ~~~~~eV~DL~FS~dgk~lasig----~d-~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~-----~~~~l~laa~ 251 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDGKFLASIG----AD-SARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDN-----AQETLRLAAS 251 (398)
T ss_pred HhhcCccccceeCCCCcEEEEec----CC-ceEEEEeccCchhhhcCC-cccchhhhhceecccC-----CCceEEEEEe
Confidence 45667788999999999888775 23 578899988843 33332 2222322222222111 0112 33333
Q ss_pred cc-CCce---EEEEEeCC-CceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeec
Q 004067 388 EK-TGFR---HLYLHDIN-GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 462 (776)
Q Consensus 388 ~~-~g~~---~l~~~~~~-g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~ 462 (776)
.. .+.- .+..|+-+ -...++.......+.++. .|+||+.++..+.. +. +-+|.+.- .+..++.
T Consensus 252 ~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~-VS~dGkf~AlGT~d-Gs--Vai~~~~~--------lq~~~~v 319 (398)
T KOG0771|consen 252 QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA-VSDDGKFLALGTMD-GS--VAIYDAKS--------LQRLQYV 319 (398)
T ss_pred cCCCCceeEEEeeeeccccccchhhhhhccCcceeEE-EcCCCcEEEEeccC-Cc--EEEEEece--------eeeeEee
Confidence 33 2222 22223211 113344444443455554 89999987777664 32 55655541 0112222
Q ss_pred CC--C-CeEEEEEcCCcCEEEEEeeC
Q 004067 463 NG--K-GKHVAVLDHNMRNFVDFHDS 485 (776)
Q Consensus 463 ~~--~-~~~~~~~spdg~~l~~~~~~ 485 (776)
.. . .+..+.|+||.++++-+++.
T Consensus 320 k~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 320 KEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred hhhheeeeeeEEEcCCcCcccccccC
Confidence 21 1 35678999999999885443
No 337
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.93 E-value=0.0035 Score=61.39 Aligned_cols=234 Identities=11% Similarity=0.061 Sum_probs=143.8
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEE-eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQEL-VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+..+++-|-.++++- |.....|.+||+++|+.+. |+.+. ..+..+.+|+
T Consensus 154 Vr~vavdP~n~wf~t-----gs~DrtikIwDlatg~LkltltGhi------------------------~~vr~vavS~- 203 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFAT-----GSADRTIKIWDLATGQLKLTLTGHI------------------------ETVRGVAVSK- 203 (460)
T ss_pred EEEEeeCCCceeEEe-----cCCCceeEEEEcccCeEEEeecchh------------------------heeeeeeecc-
Confidence 578888999998883 4445689999999999754 33221 2466788887
Q ss_pred CCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCc
Q 004067 136 SSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 136 ~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
---+++.. .+.+|.-||++..+.++..-.+-. .+..+...|.-..|+-..+ .-+.+||+.+....-...+...
T Consensus 204 --rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-- 278 (460)
T KOG0285|consen 204 --RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-- 278 (460)
T ss_pred --cCceEEEecCCCeeEEEechhhhhHHHhccccc-eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC--
Confidence 55566554 678899999999887733332223 3666777886665554433 3588888887654333222221
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+..+...|-.-+|+..+.| ..|.+||+.
T Consensus 279 ---------------~V~~V~~~~~dpqvit~S~D------------------------------------~tvrlWDl~ 307 (460)
T KOG0285|consen 279 ---------------PVASVMCQPTDPQVITGSHD------------------------------------STVRLWDLR 307 (460)
T ss_pred ---------------cceeEEeecCCCceEEecCC------------------------------------ceEEEeeec
Confidence 03345565544456665543 458999998
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~ 372 (776)
.|+.... ++.+...+..++..|.-..++..+ ...|.-|++-.|+. +.+..+..-.-
T Consensus 308 agkt~~t--------lt~hkksvral~lhP~e~~fASas-----~dnik~w~~p~g~f~~nlsgh~~iin---------- 364 (460)
T KOG0285|consen 308 AGKTMIT--------LTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLPEGEFLQNLSGHNAIIN---------- 364 (460)
T ss_pred cCceeEe--------eecccceeeEEecCCchhhhhccC-----CccceeccCCccchhhccccccceee----------
Confidence 8775433 155667788888888765443332 22367777766653 33332221100
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCc
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGT 403 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~ 403 (776)
.++-..++++++....| .|+.||-..|
T Consensus 365 --tl~~nsD~v~~~G~dng--~~~fwdwksg 391 (460)
T KOG0285|consen 365 --TLSVNSDGVLVSGGDNG--SIMFWDWKSG 391 (460)
T ss_pred --eeeeccCceEEEcCCce--EEEEEecCcC
Confidence 01223455777766666 7888886555
No 338
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.93 E-value=0.0039 Score=62.69 Aligned_cols=267 Identities=10% Similarity=0.095 Sum_probs=145.7
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCcee
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQR 203 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~ 203 (776)
++.++...| -...++.. .+..+.+.|...++.. .+-.+..-.+....++||...++-.+. ..|++|..-.....
T Consensus 221 gi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIP---SSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecC---CCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 456666666 32334333 4446778888887776 333333334778899999887666554 46888877655544
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
++..-.+. .+..+.-.|.|++++..+.+..
T Consensus 297 ~~~~~h~~-----------------~V~~ls~h~tgeYllsAs~d~~--------------------------------- 326 (506)
T KOG0289|consen 297 TSSRPHEE-----------------PVTGLSLHPTGEYLLSASNDGT--------------------------------- 326 (506)
T ss_pred cccccccc-----------------cceeeeeccCCcEEEEecCCce---------------------------------
Confidence 43322111 1446667899998887764321
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCce
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSW 362 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~ 362 (776)
....|..+|.....-.. ...+-.+...+|.|||-++.... .+..|.+||+.++....-+ .+.++.
T Consensus 327 ---w~Fsd~~~g~~lt~vs~------~~s~v~~ts~~fHpDgLifgtgt----~d~~vkiwdlks~~~~a~Fpght~~v- 392 (506)
T KOG0289|consen 327 ---WAFSDISSGSQLTVVSD------ETSDVEYTSAAFHPDGLIFGTGT----PDGVVKIWDLKSQTNVAKFPGHTGPV- 392 (506)
T ss_pred ---EEEEEccCCcEEEEEee------ccccceeEEeeEcCCceEEeccC----CCceEEEEEcCCccccccCCCCCCce-
Confidence 12334444433222111 11234567789999995443332 5677999999876622111 111111
Q ss_pred eecccccccCCCCccccCCeEEEE-eccCCceEEEEEeCCCc-eeeccccCCe-EEEEEEeecCCCcEEEEEEccCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWA-SEKTGFRHLYLHDINGT-CLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~-s~~~g~~~l~~~~~~g~-~~~~lt~~~~-~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..+++..++++.. ..+++ .+.+||+..- ..+.++..+. .+.++ .|+..|+++...+. .
T Consensus 393 -----------k~i~FsENGY~Lat~add~--~V~lwDLRKl~n~kt~~l~~~~~v~s~-~fD~SGt~L~~~g~-----~ 453 (506)
T KOG0289|consen 393 -----------KAISFSENGYWLATAADDG--SVKLWDLRKLKNFKTIQLDEKKEVNSL-SFDQSGTYLGIAGS-----D 453 (506)
T ss_pred -----------eEEEeccCceEEEEEecCC--eEEEEEehhhcccceeeccccccceeE-EEcCCCCeEEeecc-----e
Confidence 0123344554443 34455 5999997643 3444544443 34444 49999998766632 2
Q ss_pred eeEEEEEeCCCCCCccccceeecCCCCe-EEEEEcCCcCEEEEE
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTNGKGK-HVAVLDHNMRNFVDF 482 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~~~~~-~~~~~spdg~~l~~~ 482 (776)
+.+|..+-.+... .+...+....|. ..+.|...-++++..
T Consensus 454 l~Vy~~~k~~k~W---~~~~~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 454 LQVYICKKKTKSW---TEIKELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred eEEEEEecccccc---eeeehhhhcccccceeeecccceEEeec
Confidence 5666666321111 133444444433 356777776655544
No 339
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.92 E-value=0.0025 Score=61.46 Aligned_cols=225 Identities=13% Similarity=0.055 Sum_probs=127.4
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC--EEEEE-ECCcEEEEecCCCceeEEeeCCCCCc
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT--MIAFV-RDCELHVLNLLINEQRQLTHGANGNT 213 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~--~la~~-~~~~l~~~~l~~g~~~~lt~~~~~~~ 213 (776)
+|.+++.. .|..|+++|+........|-.+ .+.+....|+++-. .|+.. .++.|.+|+...= ..+-.....
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H-- 126 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSH-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAH-- 126 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceecc-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeeccc--
Confidence 56777765 6678999999887655344443 34588889988774 44444 4567888886532 222111110
Q ss_pred eecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcC
Q 004067 214 VTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA 293 (776)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 293 (776)
.+.+..++..|-|| ||..-..+ ..|.+||+-
T Consensus 127 -------------~~~Vt~lsiHPS~K-LALsVg~D-----------------------------------~~lr~WNLV 157 (362)
T KOG0294|consen 127 -------------KGQVTDLSIHPSGK-LALSVGGD-----------------------------------QVLRTWNLV 157 (362)
T ss_pred -------------ccccceeEecCCCc-eEEEEcCC-----------------------------------ceeeeehhh
Confidence 11255788999887 55432111 347899998
Q ss_pred CCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccC
Q 004067 294 GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPL 372 (776)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~ 372 (776)
.|+...+ .+-......+.|+|.|.+++.... +.-.||..| +..+ ..+...... - .
T Consensus 158 ~Gr~a~v---------~~L~~~at~v~w~~~Gd~F~v~~~---~~i~i~q~d--~A~v~~~i~~~~r~-l------~--- 213 (362)
T KOG0294|consen 158 RGRVAFV---------LNLKNKATLVSWSPQGDHFVVSGR---NKIDIYQLD--NASVFREIENPKRI-L------C--- 213 (362)
T ss_pred cCcccee---------eccCCcceeeEEcCCCCEEEEEec---cEEEEEecc--cHhHhhhhhccccc-e------e---
Confidence 8875443 122233445999999986555532 233344444 3222 222211000 0 0
Q ss_pred CCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEee-cCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 373 DKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGV-NEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 373 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~-s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
+.+..++.+++...++ .|..+|-+.. ....++.+...|-.+..+ .+++ +++.+++.++. +.+|.++..
T Consensus 214 ---~~~l~~~~L~vG~d~~--~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~--I~vWd~~~~ 283 (362)
T KOG0294|consen 214 ---ATFLDGSELLVGGDNE--WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGF--IKVWDIDME 283 (362)
T ss_pred ---eeecCCceEEEecCCc--eEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCce--EEEEEcccc
Confidence 0223445566654444 7888887743 345566666666665534 3444 45666666654 899999973
No 340
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.91 E-value=0.00033 Score=72.02 Aligned_cols=204 Identities=12% Similarity=0.058 Sum_probs=111.2
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
+...+-.|++|.|...+ .||+++..++.. +. ..|.+.... ....-..++.-+...++
T Consensus 128 ~~~~~~~gd~lcFnvg~------~lyv~~~~g~~~--~~---------~pi~k~~y~------gt~P~cHdfn~~~a~~~ 184 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFNVGR------ELYVYSYRGAAD--LS---------KPIDKREYK------GTSPTCHDFNSFTATPK 184 (636)
T ss_pred eccccCCCCEEEEecCC------eEEEEEccCcch--hc---------cchhhhccc------CCCCceecccccccCCC
Confidence 44567778888886543 599999886431 11 111111000 00011223333333336
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCC----CCCccCceeCCCCCEE--EEEECCcEEEEecCC-----CceeEEe
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSS----CSPVIDPHLSSDGTMI--AFVRDCELHVLNLLI-----NEQRQLT 206 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l--a~~~~~~l~~~~l~~-----g~~~~lt 206 (776)
|-.|++. ..++++++|....+.. +|-..+ ..++....|-|-++.+ +.-.++++|+++..- ...-+..
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 6666654 5678888887664433 322111 1246678998855544 444567899886531 1111111
Q ss_pred eCCCC-------Ccee-cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 207 HGANG-------NTVT-HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 207 ~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
..+.. .... +.+..|...+. -+..++|||||+.||.++.|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~FS~DG~~LA~VSqD------------------------------ 311 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAFSPDGKYLATVSQD------------------------------ 311 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccc--cccceeEcCCCceEEEEecC------------------------------
Confidence 11110 0111 23334444333 46789999999999999865
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.-|.|+|.++.++.-+. ..-.+....++||||||+|+..-
T Consensus 312 ------GfLRvF~fdt~eLlg~m--------kSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 312 ------GFLRIFDFDTQELLGVM--------KSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred ------ceEEEeeccHHHHHHHH--------HhhccceEEEEEcCCccEEEecC
Confidence 34788888776654431 12345677899999999887653
No 341
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00059 Score=63.58 Aligned_cols=200 Identities=13% Similarity=0.073 Sum_probs=126.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
.-.++||+.-..+++...++| .|.+||.. .....|. ..+++...+.+..|++
T Consensus 63 LfdV~Wse~~e~~~~~a~GDG----SLrl~d~~-~~s~Pi~---------------------~~kEH~~EV~Svdwn~-- 114 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDG----SLRLFDLT-MPSKPIH---------------------KFKEHKREVYSVDWNT-- 114 (311)
T ss_pred eeEeeecCCCcceEEEEecCc----eEEEeccC-CCCcchh---------------------HHHhhhhheEEecccc--
Confidence 368899999999998888765 48888832 2222222 1223446788999998
Q ss_pred CCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC
Q 004067 137 SKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 137 ~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
--++++.+ -++.|.+|+..-++...+.+.+. ..+....||| ++..+++.+.+ -+-+||+......+...-...
T Consensus 115 -~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~- 191 (311)
T KOG0277|consen 115 -VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN-SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS- 191 (311)
T ss_pred -ccceeEEeeccCCceEeecCCCCcceEeecCCc-cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc-
Confidence 55555544 78899999988777663444433 3578899999 56666776653 466777654322222221111
Q ss_pred ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA 292 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~ 292 (776)
+ +...-|+.=...+++....+ ..|+.||+
T Consensus 192 E----------------il~cdw~ky~~~vl~Tg~vd-----------------------------------~~vr~wDi 220 (311)
T KOG0277|consen 192 E----------------ILCCDWSKYNHNVLATGGVD-----------------------------------NLVRGWDI 220 (311)
T ss_pred e----------------eEeecccccCCcEEEecCCC-----------------------------------ceEEEEeh
Confidence 1 12344776566666654221 34788888
Q ss_pred CCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCC
Q 004067 293 AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..=+.-... +.+++..+..+.|||-.. .|+..+ -+.+..+||.+.+
T Consensus 221 r~~r~pl~e-------L~gh~~AVRkvk~Sph~~~lLaSas----YDmT~riw~~~~~ 267 (311)
T KOG0277|consen 221 RNLRTPLFE-------LNGHGLAVRKVKFSPHHASLLASAS----YDMTVRIWDPERQ 267 (311)
T ss_pred hhcccccee-------ecCCceEEEEEecCcchhhHhhhcc----ccceEEecccccc
Confidence 754432222 267888899999999876 555444 5677888888754
No 342
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.90 E-value=0.00017 Score=69.76 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=125.9
Q ss_pred CcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEe
Q 004067 77 HSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQD 154 (776)
Q Consensus 77 ~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d 154 (776)
|....+|.+||.++-.. +.|+.| ...+.-..| |.+.|+.. .+..+.+||
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GH------------------------tGSVLCLqy-----d~rviisGSSDsTvrvWD 263 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGH------------------------TGSVLCLQY-----DERVIVSGSSDSTVRVWD 263 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcC------------------------CCcEEeeec-----cceEEEecCCCceEEEEe
Confidence 44456889999876543 333322 223444443 55644443 677899999
Q ss_pred CCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee---EEeeCCCCCceecCCcccceecccCCcc
Q 004067 155 LSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR---QLTHGANGNTVTHGLAEYIAQEEMDRKT 231 (776)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~---~lt~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (776)
+++|++...+..+..+ +....|+ +|-.+-...+..+.+|+++..... ++..+... .++
T Consensus 264 v~tge~l~tlihHcea-VLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-----------------aVN 324 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEA-VLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-----------------AVN 324 (499)
T ss_pred ccCCchhhHHhhhcce-eEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-----------------hee
Confidence 9999988455554443 6778887 444444444566888888765322 11111110 012
Q ss_pred eEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCC
Q 004067 232 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY 311 (776)
Q Consensus 232 ~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 311 (776)
.+ .-|.|+|+.++.| ..|.+|+..+++..+. +.+
T Consensus 325 vV--dfd~kyIVsASgD------------------------------------RTikvW~~st~efvRt--------l~g 358 (499)
T KOG0281|consen 325 VV--DFDDKYIVSASGD------------------------------------RTIKVWSTSTCEFVRT--------LNG 358 (499)
T ss_pred ee--ccccceEEEecCC------------------------------------ceEEEEeccceeeehh--------hhc
Confidence 22 2367777766643 4589999999987654 145
Q ss_pred CcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCC
Q 004067 312 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG 391 (776)
Q Consensus 312 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g 391 (776)
+...+..+.+ .|+.++..+ .+..|.+||++.|..-++.+.... .-... -+ ++.-+.+..-+|
T Consensus 359 HkRGIAClQY--r~rlvVSGS----SDntIRlwdi~~G~cLRvLeGHEe----LvRci-------RF-d~krIVSGaYDG 420 (499)
T KOG0281|consen 359 HKRGIACLQY--RDRLVVSGS----SDNTIRLWDIECGACLRVLEGHEE----LVRCI-------RF-DNKRIVSGAYDG 420 (499)
T ss_pred ccccceehhc--cCeEEEecC----CCceEEEEeccccHHHHHHhchHH----hhhhe-------ee-cCceeeeccccc
Confidence 6666665554 677776554 466799999999987665544322 00001 11 222333444466
Q ss_pred ceEEEEEeCCCce
Q 004067 392 FRHLYLHDINGTC 404 (776)
Q Consensus 392 ~~~l~~~~~~g~~ 404 (776)
.|.+||+..+.
T Consensus 421 --kikvWdl~aal 431 (499)
T KOG0281|consen 421 --KIKVWDLQAAL 431 (499)
T ss_pred --eEEEEeccccc
Confidence 88889877654
No 343
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.89 E-value=0.00027 Score=68.91 Aligned_cols=227 Identities=10% Similarity=0.091 Sum_probs=119.1
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhh
Q 004067 528 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 607 (776)
Q Consensus 528 ~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~ 607 (776)
.++++-| .+++.++.... .++|++|-.|.-+.+... -|..-+.........+.|.++-+|.||+..-...+.
T Consensus 3 ~v~t~~G-~v~V~v~G~~~-----~~kp~ilT~HDvGlNh~s--cF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p 74 (283)
T PF03096_consen 3 DVETPYG-SVHVTVQGDPK-----GNKPAILTYHDVGLNHKS--CFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLP 74 (283)
T ss_dssp EEEETTE-EEEEEEESS-------TTS-EEEEE--TT--HHH--HCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT-----
T ss_pred eeccCce-EEEEEEEecCC-----CCCceEEEeccccccchH--HHHHHhcchhHHHHhhceEEEEEeCCCCCCCccccc
Confidence 4556555 48888886544 367999999985433221 011111111122234579999999999865433322
Q ss_pred hhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccc---
Q 004067 608 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE--- 684 (776)
Q Consensus 608 ~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~--- 684 (776)
..+-...++++.+.+..+..+.. .+.+.-+|--+|+++-..+|..+|+++.++|+++|...-..+..++..
T Consensus 75 ----~~y~yPsmd~LAe~l~~Vl~~f~--lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~ 148 (283)
T PF03096_consen 75 ----EGYQYPSMDQLAEMLPEVLDHFG--LKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLS 148 (283)
T ss_dssp ----TT-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH
T ss_pred ----ccccccCHHHHHHHHHHHHHhCC--ccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHh
Confidence 22222346666666666666543 357999999999999999999999999999999886542111000000
Q ss_pred -------------------cccC-----CCCC----------------Cc----cchh-cCChhhhhccCCCcEEEEecC
Q 004067 685 -------------------KYMG-----LPSE----------------DP----VGYE-YSSVMHHVHKMKGKLLLVHGM 719 (776)
Q Consensus 685 -------------------~~~~-----~~~~----------------~~----~~~~-~~~~~~~~~~i~~P~lii~G~ 719 (776)
.+++ ...+ +. ..|. +.+.....+...+|+|++.|.
T Consensus 149 ~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~ 228 (283)
T PF03096_consen 149 SWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGD 228 (283)
T ss_dssp -------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEET
T ss_pred cccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEec
Confidence 0000 0000 00 0010 111111234456899999998
Q ss_pred CCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 720 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 720 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
.-+. ...+.++..+|. .....++.++++|=.. ..+.+..+.+.+.=|++
T Consensus 229 ~Sp~--~~~vv~~ns~Ld--p~~ttllkv~dcGglV-~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 229 NSPH--VDDVVEMNSKLD--PTKTTLLKVADCGGLV-LEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp TSTT--HHHHHHHHHHS---CCCEEEEEETT-TT-H-HHH-HHHHHHHHHHHHH
T ss_pred CCcc--hhhHHHHHhhcC--cccceEEEecccCCcc-cccCcHHHHHHHHHHHc
Confidence 8764 356678888773 3578999999987655 44566667777766665
No 344
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.89 E-value=0.0027 Score=62.69 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=108.0
Q ss_pred HhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecC-------------------------CCCCCCccCc
Q 004067 122 ERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLS-------------------------SSSCSPVIDP 175 (776)
Q Consensus 122 ~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~-------------------------~~~~~~~~~~ 175 (776)
.+...+.+.+..+ ||.+++.. .|..|.+|+....+.. .+. .+....+..+
T Consensus 191 GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~-~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 191 GHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEED-ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred ccccceeEEEecC---CCCeEEeecccceeeecccCCCccc-cccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 3456788888888 99988876 7888999983322111 110 1122246778
Q ss_pred eeCCCCCEEEEEEC--CcEEEEecCCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCC
Q 004067 176 HLSSDGTMIAFVRD--CELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEI 252 (776)
Q Consensus 176 ~~SpDg~~la~~~~--~~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 252 (776)
.|++ ..++|... .-|.+||+++|... .++.+.. ...+.++|..+.|+..+.+
T Consensus 267 ~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks-------------------l~~i~~~~~~~Ll~~gssd---- 321 (423)
T KOG0313|consen 267 VWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS-------------------LNCISYSPLSKLLASGSSD---- 321 (423)
T ss_pred EEcC--CCceEeecccceEEEEEeecccceeeeecCcc-------------------eeEeecccccceeeecCCC----
Confidence 9988 45666654 46999999988654 3332221 3467789998888876543
Q ss_pred CeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeE-EEEE
Q 004067 253 PRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQV 331 (776)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~-l~~~ 331 (776)
..|.+||+.++.-...... +.++...+..+.|+|-..+ ++..
T Consensus 322 --------------------------------r~irl~DPR~~~gs~v~~s-----~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 322 --------------------------------RHIRLWDPRTGDGSVVSQS-----LIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred --------------------------------CceeecCCCCCCCceeEEe-----eecchhhhhheecCCCCceEEEEE
Confidence 3578999886643332221 3678889999999998874 4444
Q ss_pred EeecCceEEEEEEECCCCc--eEEEEEec
Q 004067 332 LNRSQTKLKVLKFDIKTGQ--RKVILVEE 358 (776)
Q Consensus 332 ~~~~~~~~~l~~~d~~~g~--~~~l~~~~ 358 (776)
+ .+..+.+||..+.. .-.|..+.
T Consensus 365 S----~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 365 S----YDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred e----cCCeEEEEEeccCCCcceeeccCC
Confidence 4 45678899987644 34444443
No 345
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.88 E-value=0.00098 Score=68.42 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHH----cCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcC-CCCCccc--------cccccc---
Q 004067 620 EDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA-PVTSWDG--------YDTFYT--- 683 (776)
Q Consensus 620 ~D~~~~i~~l~~----~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~-~~~~~~~--------~~~~~~--- 683 (776)
.-..+|++.+.+ ...++.++.+|.|.|-=|..+..+|+. ..+++|++... ++.++.. |...|.
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~-D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAV-DPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhcc-CcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 344445444433 345678899999999999999888884 56677777542 3333221 110110
Q ss_pred -----ccc---cCCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 684 -----EKY---MGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 684 -----~~~---~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
+.. ++.| .........+|+.+..+++.|.|++.|..|+...+..+.-++..|. .+..+..+|+++|..
T Consensus 229 ~dY~~~gi~~~l~tp-~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~---G~K~lr~vPN~~H~~ 304 (367)
T PF10142_consen 229 QDYYNEGITQQLDTP-EFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLP---GEKYLRYVPNAGHSL 304 (367)
T ss_pred hhhhHhCchhhcCCH-HHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCC---CCeeEEeCCCCCccc
Confidence 000 0111 0123345668999999999999999999999999999999999983 366899999999987
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 004067 756 RRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 756 ~~~~~~~~~~~~~~~fl~~ 774 (776)
.. ......+..|+..
T Consensus 305 ~~----~~~~~~l~~f~~~ 319 (367)
T PF10142_consen 305 IG----SDVVQSLRAFYNR 319 (367)
T ss_pred ch----HHHHHHHHHHHHH
Confidence 44 5667888888865
No 346
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.87 E-value=0.00018 Score=75.38 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCC--cEEEEECCCC-CCCCchhhhhhhhhccCCccHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRG-TARRGLKFEASIKHNCGRIDAEDQLTGAEWL 629 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rg-~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l 629 (776)
..|++++.||.+.... ...|.-.| ...|.-.| .-|..+|++- .|+-. -. ...+-++.+.++.
T Consensus 175 ~spl~i~aps~p~ap~-tSd~~~~w---qs~lsl~gevvev~tfdl~n~igG~n--I~---------h~ae~~vSf~r~k 239 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPK-TSDRMWSW---QSRLSLKGEVVEVPTFDLNNPIGGAN--IK---------HAAEYSVSFDRYK 239 (784)
T ss_pred CCceEEeccCCCCCCc-cchHHHhH---HHHHhhhceeeeeccccccCCCCCcc--hH---------HHHHHHHHHhhhh
Confidence 4589999999872211 11222122 22333233 4456667652 12111 00 0123344444432
Q ss_pred HH--cCCCCCCcEEEEeechHHHHHHHHHhhCCCc-eEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhh
Q 004067 630 IK--QGLAKVGHIGLYGWSYGGYLSAITLARFPDV-FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 706 (776)
Q Consensus 630 ~~--~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (776)
.- ........|+|+|+|||..++++......|. +.+.|.+. +.. .....+. ...-+.+
T Consensus 240 vlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCig-ypl----------~~vdgpr--------girDE~L 300 (784)
T KOG3253|consen 240 VLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIG-YPL----------DTVDGPR--------GIRDEAL 300 (784)
T ss_pred hhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEec-ccc----------cCCCccc--------CCcchhh
Confidence 22 2334567899999999988888777765544 45555432 211 0000000 1112345
Q ss_pred ccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCC
Q 004067 707 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 756 (776)
Q Consensus 707 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 756 (776)
-.++.|+|++.|.+|..+++...+.+.++++ ...+++++.+++|.+.
T Consensus 301 ldmk~PVLFV~Gsnd~mcspn~ME~vreKMq---A~~elhVI~~adhsma 347 (784)
T KOG3253|consen 301 LDMKQPVLFVIGSNDHMCSPNSMEEVREKMQ---AEVELHVIGGADHSMA 347 (784)
T ss_pred HhcCCceEEEecCCcccCCHHHHHHHHHHhh---ccceEEEecCCCcccc
Confidence 5678999999999999999999999999885 4568999999999973
No 347
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.85 E-value=0.0044 Score=61.46 Aligned_cols=175 Identities=17% Similarity=0.065 Sum_probs=90.5
Q ss_pred CccCceeCCCCCEEEEEE--C--CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 171 PVIDPHLSSDGTMIAFVR--D--CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 171 ~~~~~~~SpDg~~la~~~--~--~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
....+++|+||+.+|++. + ..||+....+.....+ .... ...++|++||...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~-------------------l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGS-------------------LTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCc-------------------cccccccCCCCEEEEEc
Confidence 478899999999999999 3 3588877554443333 2221 44788999976444332
Q ss_pred ecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe
Q 004067 247 VDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI 326 (776)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~ 326 (776)
... ....+.+..+++...+.... ......|..+.+||||.
T Consensus 85 -~~~----------------------------------~~~~~~~~~~g~~~~~~v~~-----~~~~~~I~~l~vSpDG~ 124 (253)
T PF10647_consen 85 -GSG----------------------------------GVRVVRDSASGTGEPVEVDW-----PGLRGRITALRVSPDGT 124 (253)
T ss_pred -CCC----------------------------------ceEEEEecCCCcceeEEecc-----cccCCceEEEEECCCCc
Confidence 111 11122233334333332220 11112788999999999
Q ss_pred EEEEEEeecCceEEEEEEEC---CCCceEEEEEeccCceeecccccccCCCCccccCC-eEEEEeccCCceEEEEEeCCC
Q 004067 327 LTAQVLNRSQTKLKVLKFDI---KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDING 402 (776)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~d~---~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~g 402 (776)
.+++...+.. ...|++.-+ ..|....+.....-.-... .....+.|.++ .++......+......+..+|
T Consensus 125 RvA~v~~~~~-~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~-----~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 125 RVAVVVEDGG-GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL-----SDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred EEEEEEecCC-CCeEEEEEEEeCCCCCcceeccceEeccccc-----CcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 8887765442 245555543 2332333322111000000 00011245444 455555443332222577888
Q ss_pred ceeeccccC
Q 004067 403 TCLGPITEG 411 (776)
Q Consensus 403 ~~~~~lt~~ 411 (776)
+..++++..
T Consensus 199 ~~~~~l~~~ 207 (253)
T PF10647_consen 199 GPSTPLPSV 207 (253)
T ss_pred CcccccCCC
Confidence 887777443
No 348
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.84 E-value=0.0016 Score=65.92 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=72.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCC-C--CCCCCCCHHHHHHHHHHHHhcCCeeeEEE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDG-G--LDENNISPEEKLRRERLRERGLGVTRYEW 132 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (776)
+..+.+|||++++.-.+. ...|..|++.+|+.. -+...+.. . ....+.+. ..+..-+.....
T Consensus 145 ~~~vals~d~~~~fsask-----~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r---------~~h~keil~~av 210 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASK-----DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR---------KGHVKEILTLAV 210 (479)
T ss_pred ceEEEeeccccceeecCC-----CcceeeeehhcCcccccccccchhhhhccCCCCccc---------ccccceeEEEEE
Confidence 578899999999874433 246999999888743 12211000 0 00000000 011234567888
Q ss_pred eecCCCceEEEEeCCC-cEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCC
Q 004067 133 VKTSSKKKIIMVPLPD-GIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLI 199 (776)
Q Consensus 133 sp~~~dg~~l~~~~~~-~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~ 199 (776)
|+ ||++|++...+ .|.+||.++.+.+ ....+....+.+..|= +|..=.|.. ++.+-+|+++.
T Consensus 211 S~---Dgkylatgg~d~~v~Iw~~~t~ehv-~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 211 SS---DGKYLATGGRDRHVQIWDCDTLEHV-KVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cC---CCcEEEecCCCceEEEecCcccchh-hcccccccceeeeeee-cCccceeeeecCCceEEEehhH
Confidence 99 99999998554 5669999999998 5433333346666664 333223332 34466666553
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.014 Score=61.69 Aligned_cols=238 Identities=11% Similarity=0.059 Sum_probs=148.0
Q ss_pred hcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCC
Q 004067 123 RGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLIN 200 (776)
Q Consensus 123 ~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g 200 (776)
++..+.+..+.| ---+++.+ .++++.+||.++......+.-. ..+++...|-+--++++..++. +|.+++..++
T Consensus 12 rSdRVKsVd~HP---tePw~la~LynG~V~IWnyetqtmVksfeV~-~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 12 RSDRVKSVDFHP---TEPWILAALYNGDVQIWNYETQTMVKSFEVS-EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred cCCceeeeecCC---CCceEEEeeecCeeEEEecccceeeeeeeec-ccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 345688889999 55576654 7899999999998776333222 2357788888888888888764 7899998888
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+....... ++++ ++.++..|---.++..+.|
T Consensus 88 ekV~~FeA---------H~Dy--------IR~iavHPt~P~vLtsSDD-------------------------------- 118 (794)
T KOG0276|consen 88 EKVKTFEA---------HSDY--------IRSIAVHPTLPYVLTSSDD-------------------------------- 118 (794)
T ss_pred eeeEEeec---------cccc--------eeeeeecCCCCeEEecCCc--------------------------------
Confidence 75433222 2222 4467778877777655533
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCCCce-EEEEEec
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEE 358 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~ 358 (776)
..|.+||=+.+-...... .++.+++..++|-|.. ...+..+ -+.++.+|.+.+..+ .++..+.
T Consensus 119 ----m~iKlW~we~~wa~~qtf-------eGH~HyVMqv~fnPkD~ntFaS~s----LDrTVKVWslgs~~~nfTl~gHe 183 (794)
T KOG0276|consen 119 ----MTIKLWDWENEWACEQTF-------EGHEHYVMQVAFNPKDPNTFASAS----LDRTVKVWSLGSPHPNFTLEGHE 183 (794)
T ss_pred ----cEEEEeeccCceeeeeEE-------cCcceEEEEEEecCCCccceeeee----ccccEEEEEcCCCCCceeeeccc
Confidence 456777776665444333 6889999999999955 4666554 456788999877654 3444433
Q ss_pred cC-ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 359 LD-SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 359 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
.+ ..++ |-+. +++-|.++.. ....+.+||-.++...+ |..+...+.. ..|.|. --|+.+.+.++
T Consensus 184 kGVN~Vd----yy~~-------gdkpylIsga-DD~tiKvWDyQtk~CV~TLeGHt~Nvs~-v~fhp~-lpiiisgsEDG 249 (794)
T KOG0276|consen 184 KGVNCVD----YYTG-------GDKPYLISGA-DDLTIKVWDYQTKSCVQTLEGHTNNVSF-VFFHPE-LPIIISGSEDG 249 (794)
T ss_pred cCcceEE----eccC-------CCcceEEecC-CCceEEEeecchHHHHHHhhcccccceE-EEecCC-CcEEEEecCCc
Confidence 22 2211 2221 2333444422 23488999988776544 4444444443 336654 33666666665
Q ss_pred CceeeEEE
Q 004067 437 PLESHLYC 444 (776)
Q Consensus 437 ~~~~~l~~ 444 (776)
+ .+||.
T Consensus 250 T--vriWh 255 (794)
T KOG0276|consen 250 T--VRIWN 255 (794)
T ss_pred c--EEEec
Confidence 5 55554
No 350
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.018 Score=52.69 Aligned_cols=208 Identities=15% Similarity=0.115 Sum_probs=112.2
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee-cCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK-TSS 137 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp-~~~ 137 (776)
-..|||+|+.||.-++++ .-.+..++.++.+. +.++.. -+ -+...+.+..|-. ++.
T Consensus 94 c~~ws~~geliatgsndk---~ik~l~fn~dt~~~---~g~dle----~n-------------mhdgtirdl~fld~~~s 150 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDK---TIKVLPFNADTCNA---TGHDLE----FN-------------MHDGTIRDLAFLDDPES 150 (350)
T ss_pred EEEecCccCeEEecCCCc---eEEEEecccccccc---cCccee----ee-------------ecCCceeeeEEecCCCc
Confidence 458999999999654433 12344444444332 211110 00 0012355666643 233
Q ss_pred CceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 138 KKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 138 dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
.|..|+.. .+-+||+-|-..|..-..+...-+....-..| +|-.++..+.. .|..||+.-........+...+
T Consensus 151 ~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-- 226 (350)
T KOG0641|consen 151 GGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-- 226 (350)
T ss_pred CceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccC--
Confidence 34444444 45569998888777652333322211222334 34444443332 4777887655443322221111
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
.|+. -..+.+++..|.|+.|+....+ ..-.+||+.+
T Consensus 227 -~gle-------ssavaav~vdpsgrll~sg~~d------------------------------------ssc~lydirg 262 (350)
T KOG0641|consen 227 -GGLE-------SSAVAAVAVDPSGRLLASGHAD------------------------------------SSCMLYDIRG 262 (350)
T ss_pred -CCcc-------cceeEEEEECCCcceeeeccCC------------------------------------CceEEEEeeC
Confidence 0100 0114567788988877654322 3457899999
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
++..+-- .++...+..+.|||-..+++..+ -+..|.+-|+.+-
T Consensus 263 ~r~iq~f--------~phsadir~vrfsp~a~yllt~s----yd~~ikltdlqgd 305 (350)
T KOG0641|consen 263 GRMIQRF--------HPHSADIRCVRFSPGAHYLLTCS----YDMKIKLTDLQGD 305 (350)
T ss_pred Cceeeee--------CCCccceeEEEeCCCceEEEEec----ccceEEEeecccc
Confidence 9876652 45667789999999887666555 4566778787653
No 351
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.82 E-value=0.00054 Score=66.02 Aligned_cols=208 Identities=14% Similarity=0.070 Sum_probs=117.4
Q ss_pred CCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEE
Q 004067 64 PDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIM 143 (776)
Q Consensus 64 pDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~ 143 (776)
|+-...|-.+.. .-|.+||.-+|+.|.-.. .+...+.+ .+..++.||| ||.+|+
T Consensus 121 P~t~l~a~ssr~-----~PIh~wdaftG~lraSy~---------~ydh~de~---------taAhsL~Fs~---DGeqlf 174 (406)
T KOG2919|consen 121 PSTNLFAVSSRD-----QPIHLWDAFTGKLRASYR---------AYDHQDEY---------TAAHSLQFSP---DGEQLF 174 (406)
T ss_pred Cccceeeecccc-----Cceeeeeccccccccchh---------hhhhHHhh---------hhheeEEecC---CCCeEe
Confidence 555555433332 249999999998765442 11111111 3567889999 999999
Q ss_pred EeCCCcEEEEeCC-CCccc---eecCCC---CCCCccCceeCC-CCCEEEEEECC-cEEEEecCCCceeEEeeCCCCCce
Q 004067 144 VPLPDGIYFQDLS-CSKPE---LKLSSS---SCSPVIDPHLSS-DGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGNTV 214 (776)
Q Consensus 144 ~~~~~~l~~~d~~-~~~~~---~~l~~~---~~~~~~~~~~Sp-Dg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~~~ 214 (776)
-..+..|.+.|++ .|.-. ..++.+ ..+.+...+||| |.+.+|.-+-. .+-++.-.++...++..+..+
T Consensus 175 aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g--- 251 (406)
T KOG2919|consen 175 AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG--- 251 (406)
T ss_pred ecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC---
Confidence 9989999999983 33221 122222 233467789999 66677776644 344444445555555443322
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCC
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG 294 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 294 (776)
| +..+.|-+||++|+..+... -.|-.||+.-
T Consensus 252 --G------------vThL~~~edGn~lfsGaRk~-----------------------------------dkIl~WDiR~ 282 (406)
T KOG2919|consen 252 --G------------VTHLQWCEDGNKLFSGARKD-----------------------------------DKILCWDIRY 282 (406)
T ss_pred --C------------eeeEEeccCcCeecccccCC-----------------------------------CeEEEEeehh
Confidence 1 55788999999887654221 2345555542
Q ss_pred CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC-CceEEEEEe
Q 004067 295 GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVILVE 357 (776)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~ 357 (776)
-+-....+. +.......---+...|+|++|+... .++.|.+||+++ |....++..
T Consensus 283 ~~~pv~~L~----rhv~~TNQRI~FDld~~~~~LasG~----tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 283 SRDPVYALE----RHVGDTNQRILFDLDPKGEILASGD----TDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred ccchhhhhh----hhccCccceEEEecCCCCceeeccC----CCccEEEEecCCCCCccccccc
Confidence 221111110 0000001111234567888876553 566799999988 665554443
No 352
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.00032 Score=78.75 Aligned_cols=244 Identities=13% Similarity=0.144 Sum_probs=136.6
Q ss_pred CeeeEEEeecCCCceE----EEEe-CCCcEEEEeCCC----Cccce--ecCCCCCCCccCceeCCCCC-EEEEEEC-CcE
Q 004067 126 GVTRYEWVKTSSKKKI----IMVP-LPDGIYFQDLSC----SKPEL--KLSSSSCSPVIDPHLSSDGT-MIAFVRD-CEL 192 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~----l~~~-~~~~l~~~d~~~----~~~~~--~l~~~~~~~~~~~~~SpDg~-~la~~~~-~~l 192 (776)
..+...|++ -|.. |+-. .+|+|-+||... ++... +...+ .+.+....|+|... .||-..+ ++|
T Consensus 66 rF~kL~W~~---~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 66 RFNKLAWGS---YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cceeeeecc---cCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc-CCceeeeeccccCCceeeccCCCCcE
Confidence 567889999 7777 4432 788999998754 22220 11222 23478899999888 5555543 589
Q ss_pred EEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcce
Q 004067 193 HVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQED 272 (776)
Q Consensus 193 ~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (776)
++||+.. .....+..... .+ .-+..++|...-..|+-....
T Consensus 142 ~iWDlnn-~~tP~~~~~~~------~~--------~eI~~lsWNrkvqhILAS~s~------------------------ 182 (1049)
T KOG0307|consen 142 LIWDLNK-PETPFTPGSQA------PP--------SEIKCLSWNRKVSHILASGSP------------------------ 182 (1049)
T ss_pred EEeccCC-cCCCCCCCCCC------Cc--------ccceEeccchhhhHHhhccCC------------------------
Confidence 9999985 22222221110 00 002345565444444322111
Q ss_pred ecCCCCCCCCCeEEEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCC-
Q 004067 273 HAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTG- 349 (776)
Q Consensus 273 ~~~~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g- 349 (776)
+...-+||+..++.. .+.. .........++|.||+. .|+..++ +.....|-+||+.--
T Consensus 183 -----------sg~~~iWDlr~~~pii~ls~-------~~~~~~~S~l~WhP~~aTql~~As~-dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 183 -----------SGRAVIWDLRKKKPIIKLSD-------TPGRMHCSVLAWHPDHATQLLVASG-DDSAPVIQLWDLRFAS 243 (1049)
T ss_pred -----------CCCceeccccCCCccccccc-------CCCccceeeeeeCCCCceeeeeecC-CCCCceeEeecccccC
Confidence 123578888776432 2221 22335677899999987 5555544 335667999997432
Q ss_pred -ceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-ecccc-CCeEEEEEEeecCCCc
Q 004067 350 -QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITE-GDWMVEQIVGVNEASG 426 (776)
Q Consensus 350 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~-~~~~~~~~~~~s~dg~ 426 (776)
-.+.+..|..+.-.. .|.+ .+..+++++.+++ +++.|+.++++. -.+.. ++|. .. +.|.|..-
T Consensus 244 sP~k~~~~H~~Gilsl---sWc~-------~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~-fd-v~w~pr~P 309 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSL---SWCP-------QDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWC-FD-VQWCPRNP 309 (1049)
T ss_pred Cchhhhcccccceeee---ccCC-------CCchhhhcccCCC--CeeEecCCCceEeeecCCCCcce-ee-eeecCCCc
Confidence 233443443331110 1111 2446788888888 999999998763 34433 3332 22 23776665
Q ss_pred EEEEEEccCCCceeeEEEEEe
Q 004067 427 QVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 427 ~i~~~~~~~~~~~~~l~~~~~ 447 (776)
-++..+.-++. +.||.+--
T Consensus 310 ~~~A~asfdgk--I~I~sl~~ 328 (1049)
T KOG0307|consen 310 SVMAAASFDGK--ISIYSLQG 328 (1049)
T ss_pred chhhhheeccc--eeeeeeec
Confidence 45555555554 77887763
No 353
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.78 E-value=0.0075 Score=58.27 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred EcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 62 FSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 62 ~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
..-+|.++| .|.....|.++|...... ..|..| ...+....|.++..-+.
T Consensus 49 vAVs~~~~a-----SGssDetI~IYDm~k~~qlg~ll~H------------------------agsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 49 LAVSGPYVA-----SGSSDETIHIYDMRKRKQLGILLSH------------------------AGSITALKFYPPLSKSH 99 (362)
T ss_pred EEecceeEe-----ccCCCCcEEEEeccchhhhcceecc------------------------ccceEEEEecCCcchhh
Confidence 345677777 333356899999986543 333333 23678889988332224
Q ss_pred EEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCCCceecCCc
Q 004067 141 IIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANGNTVTHGLA 219 (776)
Q Consensus 141 ~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~ 219 (776)
.|.-..++.|-+|+...=+....+..+.+ .+..++..|.|+.-+-+.. .-|..|||..|..--+..-...
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-------- 170 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-------- 170 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--------
Confidence 45556889999999876544424444444 4889999999985444444 3588999998876544433221
Q ss_pred ccceecccCCcceEEECCCCCeEEEEE
Q 004067 220 EYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 220 ~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
...+.|+|.|.+.+...
T Consensus 171 ----------at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 171 ----------ATLVSWSPQGDHFVVSG 187 (362)
T ss_pred ----------ceeeEEcCCCCEEEEEe
Confidence 22477999999776654
No 354
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=4.4e-05 Score=66.30 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=78.0
Q ss_pred HHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCChhhhh
Q 004067 627 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 706 (776)
Q Consensus 627 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (776)
+|++++. -+.+..+-|-||||+.|+.+..++|++|..+|+.+++.+.+.+-. .-.++...| ++|.+.+
T Consensus 92 rYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg--------~yyddDv~y--nsP~dyl 159 (227)
T COG4947 92 RYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFG--------GYYDDDVYY--NSPSDYL 159 (227)
T ss_pred HHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcc--------ccccCceee--cChhhhc
Confidence 3555543 225678899999999999999999999999999999987653211 111111112 3444544
Q ss_pred ccCC----------CcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCC
Q 004067 707 HKMK----------GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 755 (776)
Q Consensus 707 ~~i~----------~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 755 (776)
.++. .-+.+..|..|+..+ +...+.+.|....++..+.++.+..|..
T Consensus 160 pg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 160 PGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred cCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhccccccc
Confidence 4443 246777788777654 5577778887777788887887777754
No 355
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.77 E-value=0.022 Score=54.81 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=39.2
Q ss_pred ceeCCCCCEEEEEECCcEEEEecCCCce-----eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 175 PHLSSDGTMIAFVRDCELHVLNLLINEQ-----RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 175 ~~~SpDg~~la~~~~~~l~~~~l~~g~~-----~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
++.+.||+.||.+.+..|-+....+.-. .++..+ ..+.|. .++||||+..|||..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD--------~~PQWR---------kl~WSpD~tlLa~a~ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKD--------PNPQWR---------KLAWSPDCTLLAYAE 62 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCC--------CCchhe---------EEEECCCCcEEEEEc
Confidence 4678999999999998887776665421 122222 244554 789999999999976
No 356
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.76 E-value=0.019 Score=56.84 Aligned_cols=192 Identities=11% Similarity=0.021 Sum_probs=107.7
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEee-cCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR-SQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
.+.++|..+++....-.+ .....+...-.|||||++|+.+-++ ......|-+||+. ...+.+-+-....-..
T Consensus 29 ~~~v~D~~~g~~~~~~~a------~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGP 101 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWA------PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGP 101 (305)
T ss_pred EEEEEEcCCCceeeEEcC------CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcCh
Confidence 478999999987654332 3445566778999999988776543 3456789999998 4555655433221100
Q ss_pred cccccccCCCCccccCCe-EEEEecc-------CC---------ceEEEEEeCCCce-eec--cccC--CeEEEEEEeec
Q 004067 365 LHDCFTPLDKGVTKYSGG-FIWASEK-------TG---------FRHLYLHDINGTC-LGP--ITEG--DWMVEQIVGVN 422 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~-~~~~s~~-------~g---------~~~l~~~~~~g~~-~~~--lt~~--~~~~~~~~~~s 422 (776)
.+ +.+.+++ .+.+.+. .| ..+|-++|..+|+ ..+ |... ...++.+ .++
T Consensus 102 He---------l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL-a~~ 171 (305)
T PF07433_consen 102 HE---------LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL-AVD 171 (305)
T ss_pred hh---------EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE-Eec
Confidence 00 1222222 3333321 12 2478888766654 444 4222 3345554 488
Q ss_pred CCCcEEEEEEccCCC-ce-ee-EEEEEeCCCCCCccccceeecCC-------CC-eEEEEEcCCcCEEEEEeeCCCCCCE
Q 004067 423 EASGQVYFTGTLDGP-LE-SH-LYCAKLYPDWNHTLEAPVKLTNG-------KG-KHVAVLDHNMRNFVDFHDSLDSPPR 491 (776)
Q Consensus 423 ~dg~~i~~~~~~~~~-~~-~~-l~~~~~~~~g~~~~~~~~~l~~~-------~~-~~~~~~spdg~~l~~~~~~~~~~~~ 491 (776)
.+|.. +|...+.++ .+ .- |.... .|. .++.+... .+ +-++++++||..++.++-.. .-
T Consensus 172 ~~G~V-~~a~Q~qg~~~~~~PLva~~~---~g~----~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG---g~ 240 (305)
T PF07433_consen 172 GDGTV-AFAMQYQGDPGDAPPLVALHR---RGG----ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG---GR 240 (305)
T ss_pred CCCcE-EEEEecCCCCCccCCeEEEEc---CCC----cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC---CE
Confidence 88874 444443322 11 11 22222 232 23333221 12 45789999999888775443 46
Q ss_pred EEEEEcCCCceeEe
Q 004067 492 ILLCSLQDGSLVLP 505 (776)
Q Consensus 492 i~~~~~~~~~~~~~ 505 (776)
+.++|..+|+.+..
T Consensus 241 ~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 241 VAVWDAATGRLLGS 254 (305)
T ss_pred EEEEECCCCCEeec
Confidence 88889988875443
No 357
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.0032 Score=65.87 Aligned_cols=175 Identities=8% Similarity=0.049 Sum_probs=105.8
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCE--EEEEECCcEEEEecCCCce
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTM--IAFVRDCELHVLNLLINEQ 202 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~--la~~~~~~l~~~~l~~g~~ 202 (776)
-+...+..| -|.+|+.. .++.+.+|.+.||.....+.. .+ .+..++|+|.+.. ||......+++++..=|..
T Consensus 402 ~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 402 LVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred eEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 456788888 99999987 678899999999988733333 33 3889999998873 3333445688887765521
Q ss_pred -------eEEeeCCCCCceecCCccccee----ccc---------CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCC
Q 004067 203 -------RQLTHGANGNTVTHGLAEYIAQ----EEM---------DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGK 262 (776)
Q Consensus 203 -------~~lt~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 262 (776)
..+...+....-...+..|... .+. ..+..+.|.-+|.+|+.+..+.+.
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~----------- 545 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN----------- 545 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc-----------
Confidence 1122221111111122334332 111 124567777777777766533221
Q ss_pred CCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEE
Q 004067 263 SSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVL 342 (776)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 342 (776)
..+.+.++..++.. .. +....+.+..+.|.|---.++.++ ...|.
T Consensus 546 ----------------------~~VliHQLSK~~sQ-~P-------F~kskG~vq~v~FHPs~p~lfVaT-----q~~vR 590 (733)
T KOG0650|consen 546 ----------------------KSVLIHQLSKRKSQ-SP-------FRKSKGLVQRVKFHPSKPYLFVAT-----QRSVR 590 (733)
T ss_pred ----------------------ceEEEEeccccccc-Cc-------hhhcCCceeEEEecCCCceEEEEe-----ccceE
Confidence 34666666554433 21 135567788899999877666665 34588
Q ss_pred EEECCCCce
Q 004067 343 KFDIKTGQR 351 (776)
Q Consensus 343 ~~d~~~g~~ 351 (776)
+||+..++.
T Consensus 591 iYdL~kqel 599 (733)
T KOG0650|consen 591 IYDLSKQEL 599 (733)
T ss_pred EEehhHHHH
Confidence 999877553
No 358
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.74 E-value=0.00029 Score=76.13 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=82.1
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc--chh---------hhHHHHhCCcEEEEECC-CCCCC
Q 004067 534 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT--VDM---------RAQYLRSKGILVWKLDN-RGTAR 601 (776)
Q Consensus 534 g~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~--~~~---------~~~~l~~~G~~v~~~d~-rg~g~ 601 (776)
+..+.+|++...+. +...|+||+++||||+..+...+... +.. .-..+.+ -..++.+|. +|+|.
T Consensus 60 ~~~lFyw~~~s~~~---~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l~iDqP~G~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRNG---NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVIYVDQPAGVGF 135 (462)
T ss_pred CceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeEEEeCCCCcCc
Confidence 56799999986643 25679999999999987643222110 000 0001222 256778885 57776
Q ss_pred CchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhC---C-------CceEEEEEcC
Q 004067 602 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF---P-------DVFQCAVSGA 670 (776)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~---~-------~~~~~~v~~~ 670 (776)
|-..... .........+|+..+++.+.++ +.....++.|+|+||||..+..+|.+- . --++++++..
T Consensus 136 S~~~~~~--~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 136 SYADKAD--YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred ccCCCCC--CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 6322111 0000112366777777766554 444567999999999999998877641 1 1368888888
Q ss_pred CCCC
Q 004067 671 PVTS 674 (776)
Q Consensus 671 ~~~~ 674 (776)
|+++
T Consensus 214 g~~d 217 (462)
T PTZ00472 214 GLTD 217 (462)
T ss_pred cccC
Confidence 8765
No 359
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.74 E-value=0.094 Score=56.87 Aligned_cols=290 Identities=9% Similarity=0.075 Sum_probs=155.4
Q ss_pred cCCCCEEEEEeCCCCcCcceEEEE-ecCCCc-eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCce
Q 004067 63 SPDDNLITYLLSPDHSLSRKVFSF-DPKTCK-QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKK 140 (776)
Q Consensus 63 SpDG~~ia~~~~~~~~~~~~l~~~-~~~~~~-~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~ 140 (776)
..+|.+-+|.....|.. .-++.- ...++. ++.|.+..... .... ...+..++.|| |.+
T Consensus 82 ~~~~~~~Yy~r~~~g~~-y~~~~R~~~~g~~~eevlLD~n~~A-------~g~~---------f~~Lg~~~~s~---D~~ 141 (682)
T COG1770 82 YRKGPYEYYSRTEEGKE-YPIYCRQPDEGGEGEEVLLDVNKEA-------EGHD---------FFSLGAASISP---DHN 141 (682)
T ss_pred cccCCeeEEEEecCCCc-ceeEEeccCCCCCceeEeecchhcc-------Cccc---------ceeeeeeeeCC---CCc
Confidence 44778888887755532 233333 234444 56666533211 1000 12345677788 999
Q ss_pred EEEEeCC------CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC------cEEEEecCC--CceeEEe
Q 004067 141 IIMVPLP------DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC------ELHVLNLLI--NEQRQLT 206 (776)
Q Consensus 141 ~l~~~~~------~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~------~l~~~~l~~--g~~~~lt 206 (776)
.++++.+ -.|.+.|+.+|+.. .-.-. .......|.+|++.+.|++.. .||...+.+ .+.+.+-
T Consensus 142 ~la~s~D~~G~e~y~lr~kdL~tg~~~-~d~i~--~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvy 218 (682)
T COG1770 142 LLAYSVDVLGDEQYTLRFKDLATGEEL-PDEIT--NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVY 218 (682)
T ss_pred eEEEEEecccccEEEEEEEeccccccc-chhhc--ccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEE
Confidence 9999833 34778899998876 22111 124568999999999999853 488887777 5555555
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
+..... . ...+.=|...++|+....+. .+.+
T Consensus 219 eE~d~~-f---------------~~~v~~s~s~~yi~i~~~~~---------------------------------~tsE 249 (682)
T COG1770 219 EEKDDR-F---------------FLSVGRSRSEAYIVISLGSH---------------------------------ITSE 249 (682)
T ss_pred EcCCCc-E---------------EEEeeeccCCceEEEEcCCC---------------------------------ccee
Confidence 443321 0 00111233444444433111 1256
Q ss_pred EEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEecc--CCeEEEEEEeecCceEEEEEEEC--CCCceEEEEEeccC
Q 004067 287 LGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMH--GNILTAQVLNRSQTKLKVLKFDI--KTGQRKVILVEELD 360 (776)
Q Consensus 287 l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~ 360 (776)
+++++.+... .+.+.. ...+ +.++. -|..+++.+|....+..|+.-.. .....+.+..+...
T Consensus 250 ~~ll~a~~p~~~p~vv~p--------r~~g----~eY~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~ 317 (682)
T COG1770 250 VRLLDADDPEAEPKVVLP--------RENG----VEYSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHRED 317 (682)
T ss_pred EEEEecCCCCCceEEEEE--------cCCC----cEEeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCC
Confidence 6777766443 344322 1111 11222 25567777777767777877665 22334555555444
Q ss_pred ceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEee--cCCCcEEEEEE-ccCCC
Q 004067 361 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGV--NEASGQVYFTG-TLDGP 437 (776)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~--s~dg~~i~~~~-~~~~~ 437 (776)
........| .+.+++.-.+.|-..|++++..+++...|.-.+......+.. ..+...|-|.. +--.|
T Consensus 318 ~~l~~~~~f----------~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP 387 (682)
T COG1770 318 VRLEGVDLF----------ADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTP 387 (682)
T ss_pred ceeeeeeee----------ccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeeccccc
Confidence 333321111 334555556688899999998776666565443211100011 12233344443 22334
Q ss_pred ceeeEEEEEeC
Q 004067 438 LESHLYCAKLY 448 (776)
Q Consensus 438 ~~~~l~~~~~~ 448 (776)
..++..++.
T Consensus 388 --~~~~~~dm~ 396 (682)
T COG1770 388 --ATLFDYDMA 396 (682)
T ss_pred --ceeEEeecc
Confidence 678888885
No 360
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.73 E-value=0.00022 Score=69.02 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHH--------HhCCcEEEEECCCCCC--CCchhhhhhhhhccCCccHHHHHH
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYL--------RSKGILVWKLDNRGTA--RRGLKFEASIKHNCGRIDAEDQLT 624 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l--------~~~G~~v~~~d~rg~g--~~~~~~~~~~~~~~~~~~~~D~~~ 624 (776)
..|||+||..++.. .++.++..+ ....+.++++|+.... ..+.... ...+-+..
T Consensus 5 ~pVlFIhG~~Gs~~-------q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~ 68 (225)
T PF07819_consen 5 IPVLFIHGNAGSYK-------QVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAE 68 (225)
T ss_pred CEEEEECcCCCCHh-------HHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHH---------HHHHHHHH
Confidence 57899999666532 111122222 1235889999986432 1111111 11233445
Q ss_pred HHHHHHHcC---CCCCCcEEEEeechHHHHHHHHHhhCC---CceEEEEEcC
Q 004067 625 GAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGA 670 (776)
Q Consensus 625 ~i~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~~---~~~~~~v~~~ 670 (776)
+++.+.+.. .....+|.|+||||||.++-.++...+ +.++.++.++
T Consensus 69 ~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 69 AIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred HHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 555555432 346789999999999999988876543 3566666543
No 361
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.71 E-value=0.00011 Score=69.87 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=51.5
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcE---EEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
.|||+||..+... ..|..++..|.++||. +++++|-..... ....... .......++.++|+.+++.
T Consensus 3 PVVlVHG~~~~~~------~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~ 72 (219)
T PF01674_consen 3 PVVLVHGTGGNAY------SNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY 72 (219)
T ss_dssp -EEEE--TTTTTC------GGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCcchh------hCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh
Confidence 4678999654322 2456678999999999 799998433221 1111111 1122346777778777765
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
- .. +|-|+||||||.++-+++..
T Consensus 73 T--Ga-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 73 T--GA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp H--T---EEEEEETCHHHHHHHHHHH
T ss_pred h--CC-EEEEEEcCCcCHHHHHHHHH
Confidence 3 34 99999999999999888753
No 362
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.71 E-value=0.00095 Score=62.64 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC-----ceEEEEEcCCCCC--cccccccccccccCCCC
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTS--WDGYDTFYTEKYMGLPS 691 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~-----~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~ 691 (776)
..-+..++.+|.++..+ .++=++||||||.....++..+.+ .+...|.+++..+ ....+....+-....|.
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~~ 196 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCcc
Confidence 34577888888888744 488999999999999999876422 1344444443322 00000000010011110
Q ss_pred CCccchhcCChhhhhccC--CCcEEEEecCC------CCccChHHHHHHHHHHHHCCCCeEEEEecC--CCCCCCCCCcH
Q 004067 692 EDPVGYEYSSVMHHVHKM--KGKLLLVHGMI------DENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHRDR 761 (776)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i--~~P~lii~G~~------D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~~~~~~~ 761 (776)
.....|..+-. .....+ ..-+|++.|+- |..||...+...+.-+...++.+.--+|+| +.|.-.+ ..
T Consensus 197 ~~~t~y~~y~~-~n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~lh--en 273 (288)
T COG4814 197 LIKTPYYDYIA-KNYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKLH--EN 273 (288)
T ss_pred ccCcHHHHHHH-hcceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhccC--CC
Confidence 00000100000 001112 13689999976 567888888888888877666665556665 5686532 33
Q ss_pred HHHHHHHHHHHHH
Q 004067 762 IYMEERIWEFIER 774 (776)
Q Consensus 762 ~~~~~~~~~fl~~ 774 (776)
..+...+..||-+
T Consensus 274 ~~v~~yv~~FLw~ 286 (288)
T COG4814 274 PTVAKYVKNFLWE 286 (288)
T ss_pred hhHHHHHHHHhhc
Confidence 4566777777754
No 363
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.66 E-value=0.023 Score=62.37 Aligned_cols=249 Identities=13% Similarity=0.038 Sum_probs=147.3
Q ss_pred cceEEEEecCCCceEE--eecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCC
Q 004067 80 SRKVFSFDPKTCKQEL--VFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLS 156 (776)
Q Consensus 80 ~~~l~~~~~~~~~~~~--l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~ 156 (776)
...|.+|+...+..-. +..| ..++....+.- -+..|+.. .+.++.+||..
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH------------------------~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGH------------------------FGGVWGLAFPS---GGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred CceeEEeecccceEEEeeccCC------------------------CCCceeEEEec---CCCEEEEEecCCcEEeEecC
Confidence 4578899998887633 3332 23666666654 34445544 68899999999
Q ss_pred CCccceecCCCCCCCccCceeCCCCCEEEE-EECCcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEE
Q 004067 157 CSKPELKLSSSSCSPVIDPHLSSDGTMIAF-VRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWW 235 (776)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~SpDg~~la~-~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 235 (776)
+|+....+...... + -..+-+...++- ..+..|.+|++.+|....+...... + +..+..
T Consensus 280 sg~C~~~l~gh~st-v--~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~---------~--------V~~v~~ 339 (537)
T KOG0274|consen 280 TGECTHSLQGHTSS-V--RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG---------P--------VNCVQL 339 (537)
T ss_pred CCcEEEEecCCCce-E--EEEEccCceEeeccCCceEEEEeccCcceEEEeccccc---------c--------EEEEEe
Confidence 99987334322211 2 222333333333 2567899999999988777553211 0 334444
Q ss_pred CCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcce
Q 004067 236 SLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEY 315 (776)
Q Consensus 236 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 315 (776)
+ +..++..+.+ ..|.+||+.+++.... +.++.+.
T Consensus 340 ~--~~~lvsgs~d------------------------------------~~v~VW~~~~~~cl~s--------l~gH~~~ 373 (537)
T KOG0274|consen 340 D--EPLLVSGSYD------------------------------------GTVKVWDPRTGKCLKS--------LSGHTGR 373 (537)
T ss_pred c--CCEEEEEecC------------------------------------ceEEEEEhhhceeeee--------ecCCcce
Confidence 3 6767666643 3589999998775543 2567888
Q ss_pred EEEEEeccCCeEEEEEEeecCceEEEEEEECCCC-ceEE-EEEeccCceeecccccccCCCCccccCCeEEEEeccCCce
Q 004067 316 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QRKV-ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 393 (776)
Q Consensus 316 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g-~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 393 (776)
+..+.+... ..++..+ -+..|..||+.++ +... +..+...... . . -.+.++..+..++
T Consensus 374 V~sl~~~~~-~~~~Sgs----~D~~IkvWdl~~~~~c~~tl~~h~~~v~~-----l-------~-~~~~~Lvs~~aD~-- 433 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGS----LDTTIKVWDLRTKRKCIHTLQGHTSLVSS-----L-------L-LRDNFLVSSSADG-- 433 (537)
T ss_pred EEEEEecCc-ceEEeee----eccceEeecCCchhhhhhhhcCCcccccc-----c-------c-cccceeEeccccc--
Confidence 888866554 5555544 3467999999998 4332 2222211100 0 0 1234566666677
Q ss_pred EEEEEeCCCceeeccccCC--eEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEe
Q 004067 394 HLYLHDINGTCLGPITEGD--WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 447 (776)
Q Consensus 394 ~l~~~~~~g~~~~~lt~~~--~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~ 447 (776)
.|.+||...++..+...+. ..+..+. +. +..++.+..++. +.+|.+..
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~-~~---~~~il~s~~~~~--~~l~dl~~ 483 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALA-LG---KEEILCSSDDGS--VKLWDLRS 483 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEee-cC---cceEEEEecCCe--eEEEeccc
Confidence 8999998877765554442 2233221 22 456666666554 78887763
No 364
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.15 Score=56.46 Aligned_cols=145 Identities=14% Similarity=0.015 Sum_probs=91.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+..++-|+..+-... ..+++|+...+. +....+ .+...+...+...++||
T Consensus 163 ~~~I~~~~~ge~~~i~~~------~~~~~~~v~~~~-~~~~~~------------------~~~~~Htf~~t~~~~sp-- 215 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHM------CKIHIYFVPKHT-KHTSSR------------------DITVHHTFNITCVALSP-- 215 (792)
T ss_pred CccEEEcCCceEEEEEEe------eeEEEEEecccc-eeeccc------------------hhhhhhcccceeEEecc--
Confidence 356677777775544433 247788777655 222211 11223334567789999
Q ss_pred CCceEEEEe-CCCcEEEEeCCC--Cccc-eecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCceeEEeeCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSC--SKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~--~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~~~lt~~~~~ 211 (776)
.++.++.. .+|+|.+|.--+ +... .++-+-....+....||+||.+|+-... ..|-+|.+++++.+-|..-+..
T Consensus 216 -n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~ 294 (792)
T KOG1963|consen 216 -NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSP 294 (792)
T ss_pred -ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCe
Confidence 99999977 678899996544 2111 1222223335888999999998876543 4688999999984444332221
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+..+.|||||...+....
T Consensus 295 ------------------I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 295 ------------------ILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ------------------eEEEEEcCCCCeEEEEec
Confidence 557889999997666553
No 365
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.64 E-value=0.061 Score=63.41 Aligned_cols=228 Identities=15% Similarity=0.231 Sum_probs=126.3
Q ss_pred CceeEcCCCCEEEEEeCCCCc-CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHS-LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
....|.++...+.++...... ..-++....... +.+.+.+.+.. .. ......+.++.+-+
T Consensus 25 ~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~~----~~------------~~~~~~ivs~~yl~-- 85 (928)
T PF04762_consen 25 TATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG-SVEVLASWDAP----LP------------DDPNDKIVSFQYLA-- 85 (928)
T ss_pred ceEEEecCCCeEEEEECCCCcceEEEEEeeccCC-ceeEEEecccc----CC------------cCCCCcEEEEEecc--
Confidence 566788888888888764321 111233333222 22344432110 00 00123577888888
Q ss_pred CCceEEEEe-CCCcEEEE----eCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEec----------C--
Q 004067 137 SKKKIIMVP-LPDGIYFQ----DLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNL----------L-- 198 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~----d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l----------~-- 198 (776)
|...|++. .+|+|.++ +.++.+.. .+..-+.+ +...+||||+..||++... +|.+|.- .
T Consensus 86 -d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~G-I~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~ 162 (928)
T PF04762_consen 86 -DSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSG-ILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSD 162 (928)
T ss_pred -CCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCc-EEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcc
Confidence 88877765 78999999 66666665 44444443 8889999999999999853 5555432 1
Q ss_pred -CCceeEEeeC---------CCCCce------ecCCcccceec---ccCCcceEEECCCCCeEEEEEecCCCCCeEEEee
Q 004067 199 -INEQRQLTHG---------ANGNTV------THGLAEYIAQE---EMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMH 259 (776)
Q Consensus 199 -~g~~~~lt~~---------~~~~~~------~~~~~~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 259 (776)
-|+.+.++.+ |..++. ....+ -+-+. .-+....++|-.||+++|..+.+....
T Consensus 163 ~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~------- 234 (928)
T PF04762_consen 163 DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG------- 234 (928)
T ss_pred ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC-ccccCccccCCCceEEEECCCCcEEEEEEEEcCCC-------
Confidence 1222222211 000000 00000 00000 001234788999999998877543211
Q ss_pred cCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceE
Q 004067 260 QGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKL 339 (776)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 339 (776)
.+..+.||+.++ +..-.. -...+....++|-|.|..|+... +..+..
T Consensus 235 -----------------------~~R~iRVy~ReG-~L~stS--------E~v~gLe~~l~WrPsG~lIA~~q-~~~~~~ 281 (928)
T PF04762_consen 235 -----------------------SRRVIRVYSREG-ELQSTS--------EPVDGLEGALSWRPSGNLIASSQ-RLPDRH 281 (928)
T ss_pred -----------------------ceeEEEEECCCc-eEEecc--------ccCCCccCCccCCCCCCEEEEEE-EcCCCc
Confidence 125688998884 333221 12334455689999999887775 444556
Q ss_pred EEEEEECCC
Q 004067 340 KVLKFDIKT 348 (776)
Q Consensus 340 ~l~~~d~~~ 348 (776)
.|..+.-++
T Consensus 282 ~VvFfErNG 290 (928)
T PF04762_consen 282 DVVFFERNG 290 (928)
T ss_pred EEEEEecCC
Confidence 777777654
No 366
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.63 E-value=0.0064 Score=57.95 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=106.5
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccc-eecCCCCCC----CccCceeCC--CCCEEEEEECCcEEEEec
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPE-LKLSSSSCS----PVIDPHLSS--DGTMIAFVRDCELHVLNL 197 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~-~~l~~~~~~----~~~~~~~Sp--Dg~~la~~~~~~l~~~~l 197 (776)
..+..+.|-| +++.++...+.+|.+|+++.+..+ ..+...... ....-+||| ||..++...+..++.||+
T Consensus 124 g~i~cvew~P---ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~ 200 (370)
T KOG1007|consen 124 GKINCVEWEP---NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDL 200 (370)
T ss_pred CceeeEEEcC---CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEc
Confidence 4678899999 999999999999999999887763 122221111 234579999 999999999999999998
Q ss_pred CCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 198 LINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 198 ~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
.+-... .|. +....+++.+-|.|+-+.++....|++
T Consensus 201 RT~~~~~sI~-----------------dAHgq~vrdlDfNpnkq~~lvt~gDdg-------------------------- 237 (370)
T KOG1007|consen 201 RTMKKNNSIE-----------------DAHGQRVRDLDFNPNKQHILVTCGDDG-------------------------- 237 (370)
T ss_pred cchhhhcchh-----------------hhhcceeeeccCCCCceEEEEEcCCCc--------------------------
Confidence 854321 111 111223556779998888776665443
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
.|.+||...-+.-... +.++.+.+..+.|.|--..|+.... .+..+.++.+
T Consensus 238 ---------yvriWD~R~tk~pv~e-------l~~HsHWvW~VRfn~~hdqLiLs~~---SDs~V~Lsca 288 (370)
T KOG1007|consen 238 ---------YVRIWDTRKTKFPVQE-------LPGHSHWVWAVRFNPEHDQLILSGG---SDSAVNLSCA 288 (370)
T ss_pred ---------cEEEEeccCCCccccc-------cCCCceEEEEEEecCccceEEEecC---CCceeEEEec
Confidence 3788887654432222 3678899999999997665555432 3444555554
No 367
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.63 E-value=0.00057 Score=73.42 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=106.0
Q ss_pred hcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCC-CCCEEEEEEC-CcEEEEecC
Q 004067 123 RGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS-DGTMIAFVRD-CELHVLNLL 198 (776)
Q Consensus 123 ~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~la~~~~-~~l~~~~l~ 198 (776)
+.+.+..+.|++. --.|+.+ +|+.|..||+...+.+ .+..+....++.+.||| ++...+-+.+ +.|-+||+.
T Consensus 132 H~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~~~S~-~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 132 HERSANKLDFHST---EPNILISGSQDGTVKCWDLRSKKSK-STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred hccceeeeeeccC---CccEEEecCCCceEEEEeeeccccc-ccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 3457888999883 3345554 8889999999998888 66666666789999999 4555555544 457788876
Q ss_pred CCc--eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 INE--QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g~--~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
--. .++++...+ .+.-+.|+|++.+||....|
T Consensus 208 qp~r~~~k~~AH~G------------------pV~c~nwhPnr~~lATGGRD---------------------------- 241 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNG------------------PVLCLNWHPNREWLATGGRD---------------------------- 241 (839)
T ss_pred CchhHHHHhhcccC------------------ceEEEeecCCCceeeecCCC----------------------------
Confidence 332 233333211 14467799999999876533
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 349 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g 349 (776)
..+.+||..+++...+.. ......+..+.|-|+-...+..+... .+..|++||+.-.
T Consensus 242 --------K~vkiWd~t~~~~~~~~t-------InTiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 242 --------KMVKIWDMTDSRAKPKHT-------INTIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRRP 298 (839)
T ss_pred --------ccEEEEeccCCCccceeE-------EeecceeeeeeeccCccchhhhhhcc-ccceEEEEeeccc
Confidence 347888888766544322 12334577899999987333332222 5678999998653
No 368
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.63 E-value=0.002 Score=63.56 Aligned_cols=140 Identities=10% Similarity=0.083 Sum_probs=86.7
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE-EE-EEe-ccCc
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VI-LVE-ELDS 361 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~-~l-~~~-~~~~ 361 (776)
..|++|...+|.-+.=..+ +..+...+.++.|||..+-+++..+ .+..|.+||...+..+ .+ ++. ....
T Consensus 234 ~~I~lw~~~~g~W~vd~~P-----f~gH~~SVEDLqWSptE~~vfaScS---~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRP-----FTGHTKSVEDLQWSPTEDGVFASCS---CDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred cceEeeeeccCceeecCcc-----ccccccchhhhccCCccCceEEeee---cCceEEEEEecCCCccceeEeeccCCce
Confidence 4578888888765443221 3567788999999998774444332 4567999999887332 22 222 2211
Q ss_pred eeecccccccCCCCccccCCe-EEEEeccCCceEEEEEeCCC----ceeeccccCCeEEEEEEeecCCCcEEEEEEccCC
Q 004067 362 WVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDING----TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 436 (776)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~g----~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~ 436 (776)
-+ ++|..+. ++.+...+| .+-+||+.. .....++.+...+.++. |+|....++..+..++
T Consensus 306 NV------------ISWnr~~~lLasG~DdG--t~~iwDLR~~~~~~pVA~fk~Hk~pItsie-W~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 306 NV------------ISWNRREPLLASGGDDG--TLSIWDLRQFKSGQPVATFKYHKAPITSIE-WHPHEDSVIAASGEDN 370 (440)
T ss_pred ee------------EEccCCcceeeecCCCc--eEEEEEhhhccCCCcceeEEeccCCeeEEE-eccccCceEEeccCCC
Confidence 11 1333332 555556677 777787642 22345555666677765 9988877777776664
Q ss_pred CceeeEEEEEeCC
Q 004067 437 PLESHLYCAKLYP 449 (776)
Q Consensus 437 ~~~~~l~~~~~~~ 449 (776)
++.||.+.+..
T Consensus 371 --QitiWDlsvE~ 381 (440)
T KOG0302|consen 371 --QITIWDLSVEA 381 (440)
T ss_pred --cEEEEEeeccC
Confidence 48999998843
No 369
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.62 E-value=0.0019 Score=66.59 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=69.7
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCc-ee
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINE-QR 203 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~-~~ 203 (776)
.+.+-.|+| ||.-|+.. .++.|.+|.-+|=-.. .+..... .+...+|.|+...++|...+++++-+++-+. +.
T Consensus 106 A~~~gRW~~---dGtgLlt~GEDG~iKiWSrsGMLRS-tl~Q~~~-~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i 180 (737)
T KOG1524|consen 106 AISSGRWSP---DGAGLLTAGEDGVIKIWSRSGMLRS-TVVQNEE-SIRCARWAPNSNSIVFCQGGHISIKPLAANSKII 180 (737)
T ss_pred hhhhcccCC---CCceeeeecCCceEEEEeccchHHH-HHhhcCc-eeEEEEECCCCCceEEecCCeEEEeeccccccee
Confidence 456678999 99999876 7899999987663332 4444433 4889999999999999999999999988543 22
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEE
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFT 245 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~ 245 (776)
+.... . +.+..+.|+|.+..|+..
T Consensus 181 ~WkAH-D-----------------GiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 181 RWRAH-D-----------------GLVLSLSWSTQSNIIASG 204 (737)
T ss_pred EEecc-C-----------------cEEEEeecCccccceeec
Confidence 33221 1 114467799988877653
No 370
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.61 E-value=0.0034 Score=60.50 Aligned_cols=136 Identities=11% Similarity=0.048 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccc-cccccccchhhhHHHHhCCcEEEEECCCCCCCC
Q 004067 524 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV-CDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 602 (776)
Q Consensus 524 ~~~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~-~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~ 602 (776)
.++..+++.-|. +++.++.-.+ .++|++|-.|+-+.+... -+.+.. + +.++.+..+ |.++-+|.+|+-.-
T Consensus 22 ~~e~~V~T~~G~-v~V~V~Gd~~-----~~kpaiiTyhDlglN~~scFq~ff~-~-p~m~ei~~~-fcv~HV~~PGqe~g 92 (326)
T KOG2931|consen 22 CQEHDVETAHGV-VHVTVYGDPK-----GNKPAIITYHDLGLNHKSCFQGFFN-F-PDMAEILEH-FCVYHVDAPGQEDG 92 (326)
T ss_pred ceeeeecccccc-EEEEEecCCC-----CCCceEEEecccccchHhHhHHhhc-C-HhHHHHHhh-eEEEecCCCccccC
Confidence 567777776665 8888887444 256889999985433221 011110 1 124445566 99999999988543
Q ss_pred chhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 603 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
...+ ...+....++++.+.+-.+.++. ..+.|.-+|--.|+++-...|..||+++-++|++++...
T Consensus 93 Ap~~----p~~y~yPsmd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 93 APSF----PEGYPYPSMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC 158 (326)
T ss_pred CccC----CCCCCCCCHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC
Confidence 3222 22333345777777777777765 446889999999999999999999999999999877643
No 371
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.61 E-value=0.0023 Score=61.81 Aligned_cols=215 Identities=14% Similarity=0.027 Sum_probs=119.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEee-cCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVF-SPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.-+|++|++.||-..+. .+|-++...+.+..... ..+ .+-..+....|+|
T Consensus 14 tchAwn~drt~iAv~~~~-----~evhiy~~~~~~~w~~~htls---------------------~Hd~~vtgvdWap-- 65 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNN-----HEVHIYSMLGADLWEPAHTLS---------------------EHDKIVTGVDWAP-- 65 (361)
T ss_pred eeeeecCCCceEEeccCC-----ceEEEEEecCCCCceeceehh---------------------hhCcceeEEeecC--
Confidence 556899999999965442 24555555565522211 100 1123567799999
Q ss_pred CCceEEEEe-CCCcEEEEeC-CCCccce--ecCCCCCCCccCceeCCCCCEEEEEECCcE-EEEecCCCceeEEeeCCCC
Q 004067 137 SKKKIIMVP-LPDGIYFQDL-SCSKPEL--KLSSSSCSPVIDPHLSSDGTMIAFVRDCEL-HVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~-~~~~~~~--~l~~~~~~~~~~~~~SpDg~~la~~~~~~l-~~~~l~~g~~~~lt~~~~~ 211 (776)
.+.+|+.. .+.+-|+|.. ++++.+. .|...... +..+.|||.+.++|.-+...+ -++-.+..+. -.....
T Consensus 66 -~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA-At~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKh-- 140 (361)
T KOG1523|consen 66 -KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA-ATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKH-- 140 (361)
T ss_pred -CCCceeEccCCCCccccccCCCCeeccceeEEEeccc-eeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhh--
Confidence 88888865 7888999988 7776542 22222222 678999999999998776432 2222111110 000000
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
+...-...+..+.|.|++=.|+..+.|.. ... +..|+-+
T Consensus 141 ----------ikkPirStv~sldWhpnnVLlaaGs~D~k-~rV------------------------------fSayIK~ 179 (361)
T KOG1523|consen 141 ----------IKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRV------------------------------FSAYIKG 179 (361)
T ss_pred ----------hCCccccceeeeeccCCcceecccccCcc-eeE------------------------------EEEeeec
Confidence 00000011457789998877765543211 111 2334444
Q ss_pred cCCCce-----EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 292 AAGGPV-----SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 292 ~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
++.+.. ..+.+.+-..+.....+.+..+.|||+|..|+++. .+..+...|..+..
T Consensus 180 Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~----Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 180 VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG----HDSTVSFVDAAGPS 239 (361)
T ss_pred cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec----CCCceEEeecCCCc
Confidence 433221 01111100011224567888999999999999887 56678888887764
No 372
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.61 E-value=0.061 Score=57.42 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=38.2
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeE
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQ 204 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~ 204 (776)
+..+++. .++.|+.+|..+|+..-...... .....|. .++..+++.. ++.||.+|.++|+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W 129 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELW 129 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEee
Confidence 3445544 66789999998887652222211 1122333 3566665543 4679999999998753
No 373
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.056 Score=59.71 Aligned_cols=289 Identities=12% Similarity=0.073 Sum_probs=142.5
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++||+|++.+.-.. ..+|-++...+|+...... + +-..+....+.|.+.
T Consensus 20 ~~avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~--~---------------------~~a~l~s~~~~~~~~ 70 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT------GNFVKVYSTATGECITSLE--D---------------------HTAPLTSVIVLPSSE 70 (792)
T ss_pred cccccccCCcEEEEee------CCEEEEEecchHhhhhhcc--c---------------------ccCccceeeecCCCc
Confidence 5668999999886332 2479999999988644321 1 012344455555222
Q ss_pred CceEEE-EeCCCcEEEEeCCCCccceecCCCCCCCccCceeCC---CCCEEEEEECCcEEEEecCC----CceeEEeeCC
Q 004067 138 KKKIIM-VPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS---DGTMIAFVRDCELHVLNLLI----NEQRQLTHGA 209 (776)
Q Consensus 138 dg~~l~-~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp---Dg~~la~~~~~~l~~~~l~~----g~~~~lt~~~ 209 (776)
.-..++ -..+|.|.+||-..++.....+.+- ++....+.| |-..++|++..+..+..... ++.+++....
T Consensus 71 ~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~--~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t 148 (792)
T KOG1963|consen 71 NANYLIVCSLDGTIRVWDWSDGELLKTFDNNL--PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLAT 148 (792)
T ss_pred cceEEEEEecCccEEEecCCCcEEEEEEecCC--ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeee
Confidence 212222 2378999999998887762332211 122223322 22255666654433332111 1222221111
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
... -..++..+.+. ...+..++-|..-+.... ..+++
T Consensus 149 ~~~----~~~d~~~~~~~--~~~I~~~~~ge~~~i~~~-------------------------------------~~~~~ 185 (792)
T KOG1963|consen 149 FDS----AKGDFLKEHQE--PKSIVDNNSGEFKGIVHM-------------------------------------CKIHI 185 (792)
T ss_pred ccc----cchhhhhhhcC--CccEEEcCCceEEEEEEe-------------------------------------eeEEE
Confidence 100 00111111111 234555665553332221 34677
Q ss_pred EEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC--Cc---eEEEEEeccCceee
Q 004067 290 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQ---RKVILVEELDSWVN 364 (776)
Q Consensus 290 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~--g~---~~~l~~~~~~~~~~ 364 (776)
|....+........ .-..+...+...++||.++.++..... +.|.+|.--+ ++ .+.+.=+.+..
T Consensus 186 ~~v~~~~~~~~~~~----~~~~Htf~~t~~~~spn~~~~Aa~d~d----GrI~vw~d~~~~~~~~t~t~lHWH~~~V--- 254 (792)
T KOG1963|consen 186 YFVPKHTKHTSSRD----ITVHHTFNITCVALSPNERYLAAGDSD----GRILVWRDFGSSDDSETCTLLHWHHDEV--- 254 (792)
T ss_pred EEecccceeeccch----hhhhhcccceeEEeccccceEEEeccC----CcEEEEeccccccccccceEEEeccccc---
Confidence 77766542211110 001233335778999999988766543 3466665432 11 22222111110
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 444 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~ 444 (776)
..-.|++ ++..+++..+.| -|.+|.+++++.+-|..-...+..+. +|||+.. |.....++ .++|..
T Consensus 255 ~~L~fS~--------~G~~LlSGG~E~--VLv~Wq~~T~~kqfLPRLgs~I~~i~-vS~ds~~-~sl~~~DN--qI~li~ 320 (792)
T KOG1963|consen 255 NSLSFSS--------DGAYLLSGGREG--VLVLWQLETGKKQFLPRLGSPILHIV-VSPDSDL-YSLVLEDN--QIHLIK 320 (792)
T ss_pred ceeEEec--------CCceEeecccce--EEEEEeecCCCcccccccCCeeEEEE-EcCCCCe-EEEEecCc--eEEEEe
Confidence 0011222 233455555566 78889999888666776666777765 9999985 44433332 356655
Q ss_pred E
Q 004067 445 A 445 (776)
Q Consensus 445 ~ 445 (776)
.
T Consensus 321 ~ 321 (792)
T KOG1963|consen 321 A 321 (792)
T ss_pred c
Confidence 5
No 374
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.59 E-value=0.004 Score=69.86 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=70.8
Q ss_pred EEEEEeCCCCcCcceEEEEecCCCceEEe-ecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEE-e
Q 004067 68 LITYLLSPDHSLSRKVFSFDPKTCKQELV-FSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMV-P 145 (776)
Q Consensus 68 ~ia~~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~-~ 145 (776)
+|||+....+ +|.+.|.+|..++.+ +... ..+..+.||| ||++|+| +
T Consensus 320 kiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~------------------------~~i~sP~~SP---DG~~vAY~t 368 (912)
T TIGR02171 320 KLAFRNDVTG----NLAYIDYTKGASRAVEIEDT------------------------ISVYHPDISP---DGKKVAFCT 368 (912)
T ss_pred eEEEEEcCCC----eEEEEecCCCCceEEEecCC------------------------CceecCcCCC---CCCEEEEEE
Confidence 6999986332 799999999999888 6432 3677899999 9999999 3
Q ss_pred ------CCCcEEEEeCCCCccc-eecCCCCCCCccCcee--CCCCC-EEEEEECC------------cEEEEecCCC---
Q 004067 146 ------LPDGIYFQDLSCSKPE-LKLSSSSCSPVIDPHL--SSDGT-MIAFVRDC------------ELHVLNLLIN--- 200 (776)
Q Consensus 146 ------~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~--SpDg~-~la~~~~~------------~l~~~~l~~g--- 200 (776)
....||+.||.+.... ..|..- .+..|+| .++|. -|+|+++- --|.+..+.|
T Consensus 369 s~e~~~g~s~vYv~~L~t~~~~~vkl~ve---~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 369 GIEGLPGKSSVYVRNLNASGSGLVKLPVE---NAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred eecCCCCCceEEEEehhccCCCceEeecc---cccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 2345999999876544 133321 2344555 67776 56777651 2666666655
Q ss_pred ceeEEe
Q 004067 201 EQRQLT 206 (776)
Q Consensus 201 ~~~~lt 206 (776)
+.+.|.
T Consensus 446 ~p~kl~ 451 (912)
T TIGR02171 446 TPKKLF 451 (912)
T ss_pred Cchhhh
Confidence 445554
No 375
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.59 E-value=0.0049 Score=63.02 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=118.6
Q ss_pred CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce-eEEeeCCCCCceecCCcccce
Q 004067 146 LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ-RQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~-~~lt~~~~~~~~~~~~~~~~~ 223 (776)
..+.+.+||+......+.+..+.. .+..+.+.-...+||-++. ++|.+..+.++.. +.++..... .
T Consensus 99 ~~~~Vkiwdl~~kl~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-------s---- 166 (673)
T KOG4378|consen 99 QSGCVKIWDLRAKLIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-------S---- 166 (673)
T ss_pred cCceeeehhhHHHHHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-------e----
Confidence 566789999986555534555444 4778888888889999987 5899999998865 344443211 1
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcc
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQ 303 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~ 303 (776)
++.+.|||-.+.++....+. ..+.+||..+...+--..
T Consensus 167 ------vRll~ys~skr~lL~~asd~-----------------------------------G~VtlwDv~g~sp~~~~~- 204 (673)
T KOG4378|consen 167 ------VRLLRYSPSKRFLLSIASDK-----------------------------------GAVTLWDVQGMSPIFHAS- 204 (673)
T ss_pred ------EEEeecccccceeeEeeccC-----------------------------------CeEEEEeccCCCcccchh-
Confidence 34677999888887765443 346888887765432211
Q ss_pred cCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCCCccccCCe
Q 004067 304 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG 382 (776)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (776)
..+......++|||-...|+..-. -+..|++||..+... .+|+-+. + ++ .+++.+.+
T Consensus 205 ------~~HsAP~~gicfspsne~l~vsVG---~Dkki~~yD~~s~~s~~~l~y~~-P--------ls----tvaf~~~G 262 (673)
T KOG4378|consen 205 ------EAHSAPCRGICFSPSNEALLVSVG---YDKKINIYDIRSQASTDRLTYSH-P--------LS----TVAFSECG 262 (673)
T ss_pred ------hhccCCcCcceecCCccceEEEec---ccceEEEeecccccccceeeecC-C--------cc----eeeecCCc
Confidence 234445667999998874433321 356799999876543 2332211 1 00 11223333
Q ss_pred -EEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEE
Q 004067 383 -FIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQI 418 (776)
Q Consensus 383 -~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~ 418 (776)
++.+.+..| .|+.+|+.+.+ .+.+..++..|..+
T Consensus 263 ~~L~aG~s~G--~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 263 TYLCAGNSKG--ELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred eEEEeecCCc--eEEEEecccCCCCceEeeecccceeEE
Confidence 444445566 89999987654 23344444445544
No 376
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.58 E-value=0.094 Score=56.40 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=68.2
Q ss_pred cChHhhhcCCCCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCC--ceE---EeecCCCCCCCCCCCCHHHHH
Q 004067 41 FSLEEIVQSPLPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTC--KQE---LVFSPPDGGLDENNISPEEKL 115 (776)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~--~~~---~l~~~~~~~~~~~~i~~~~~~ 115 (776)
|+.|.+...- .+.+.++.|+|+|..|.-.+.+ ..+.+|.++.. -.. ++-...
T Consensus 257 is~eall~GH---eDWV~sv~W~p~~~~LLSASaD-----ksmiiW~pd~~tGiWv~~vRlGe~g--------------- 313 (764)
T KOG1063|consen 257 ISFEALLMGH---EDWVYSVWWHPEGLDLLSASAD-----KSMIIWKPDENTGIWVDVVRLGEVG--------------- 313 (764)
T ss_pred EehhhhhcCc---ccceEEEEEccchhhheecccC-----cceEEEecCCccceEEEEEEeeccc---------------
Confidence 5566665421 1447899999999666533332 34666666543 221 222100
Q ss_pred HHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEe-CCCCccc-eecCCCCCCCccCceeCCCCCEEEEEE
Q 004067 116 RRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQD-LSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVR 188 (776)
Q Consensus 116 ~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d-~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~ 188 (776)
....|...--|+| ++..|+-. ..|.+++|- .+..... .....+.-..+..+.|+|.|..|+-++
T Consensus 314 ------g~a~GF~g~lw~~---n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs 380 (764)
T KOG1063|consen 314 ------GSAGGFWGGLWSP---NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS 380 (764)
T ss_pred ------ccccceeeEEEcC---CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec
Confidence 0124677788999 88766544 667788887 2222222 123333333478899999999888776
No 377
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.58 E-value=0.017 Score=58.74 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=154.1
Q ss_pred CCCceeEcCCCC-EEEEEeCCCCcCcceEEEEecCCCce---EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEE
Q 004067 56 APTSIGFSPDDN-LITYLLSPDHSLSRKVFSFDPKTCKQ---ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYE 131 (776)
Q Consensus 56 ~~~~~~~SpDG~-~ia~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (776)
+++..+|.|--. .++-+.. ..++|-+||+.+.++ .....++ ++..|....
T Consensus 188 Rit~l~fHPt~~~~lva~Gd----K~G~VG~Wn~~~~~~d~d~v~~f~~----------------------hs~~Vs~l~ 241 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGD----KGGQVGLWNFGTQEKDKDGVYLFTP----------------------HSGPVSGLK 241 (498)
T ss_pred ceEEEEecccCcceEEEEcc----CCCcEEEEecCCCCCccCceEEecc----------------------CCccccceE
Confidence 357888999776 4543333 346899999964332 1111110 123577888
Q ss_pred EeecCCCceEEEEeCCCcEEEEeCCCCccceecCCC--CCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce--eEEe
Q 004067 132 WVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSS--SCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ--RQLT 206 (776)
Q Consensus 132 ~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~--~~lt 206 (776)
|+|.++ .+.+..+.+|.|-..|++++... .+-.. .........|+-+.+.++|..+ +++-++|+.++.. ..+.
T Consensus 242 F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 242 FSPANT-SQIYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred ecCCCh-hheeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 998443 45555568999999999988765 32222 2223556788888888888876 3456666654432 2222
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.... ++.++++.|--.+++-....+ ..
T Consensus 320 lh~k------------------KI~sv~~NP~~p~~laT~s~D-----------------------------------~T 346 (498)
T KOG4328|consen 320 LHKK------------------KITSVALNPVCPWFLATASLD-----------------------------------QT 346 (498)
T ss_pred hhhc------------------ccceeecCCCCchheeecccC-----------------------------------cc
Confidence 1111 255677888766554333211 22
Q ss_pred EEEEEcCC--CceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC----CCceE-EEEEe-
Q 004067 287 LGVVSAAG--GPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK----TGQRK-VILVE- 357 (776)
Q Consensus 287 l~~~d~~~--~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~----~g~~~-~l~~~- 357 (776)
+.+||+.. ++.. .+.. ..+...+....|||+|-.|+.+. .+..|.+||.. .-+.. .|...
T Consensus 347 ~kIWD~R~l~~K~sp~lst-------~~HrrsV~sAyFSPs~gtl~TT~----~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLST-------LPHRRSVNSAYFSPSGGTLLTTC----QDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eeeeehhhhcCCCCcceec-------ccccceeeeeEEcCCCCceEeec----cCCceEEeecccccccCCccceeeccC
Confidence 46777642 2221 2222 46777888999999887666554 34568888873 22222 22222
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCce-eeccccCC-eEEEEEEeecCCCcEEEEEEcc
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTC-LGPITEGD-WMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~~-~~~lt~~~-~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
....|... | ...|+++..++.. .-.- .|=++|.+++. ..+|-... ..+..+..|.|-+..++.-++.
T Consensus 416 ~t~RwlT~---f-----KA~W~P~~~li~vg~~~r--~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 416 RTGRWLTP---F-----KAAWDPDYNLIVVGRYPR--PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred cccccccc---h-----hheeCCCccEEEEeccCc--ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 22366532 1 1256666544433 2222 47777777775 23332222 2344555678877655544444
Q ss_pred C
Q 004067 435 D 435 (776)
Q Consensus 435 ~ 435 (776)
.
T Consensus 486 ~ 486 (498)
T KOG4328|consen 486 S 486 (498)
T ss_pred c
Confidence 3
No 378
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.58 E-value=0.00016 Score=74.15 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhH-HHHh--CCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 628 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~-~l~~--~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~ 628 (776)
...|+++++||..+... ...|.. .+.. ++.. .++.|+++|+..... ..+..+.... ...-..+...+..
T Consensus 69 ~~~pt~iiiHGw~~~~~-~~~~~~---~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~--~~vg~~la~~l~~ 140 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGS-SESWIQ---DMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANT--RLVGRQLAKFLSF 140 (331)
T ss_dssp TTSEEEEEE--TT-TT--TTTHHH---HHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCcCCccc-chhHHH---HHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhH--HHHHHHHHHHHHH
Confidence 46799999999765541 223322 1233 3444 589999999852211 1121111110 0012334555666
Q ss_pred HHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC--ceEEEEEcCCCC
Q 004067 629 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVT 673 (776)
Q Consensus 629 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~--~~~~~v~~~~~~ 673 (776)
|.....++.++|.|+|||+||++|..++..... ++..+..+.|..
T Consensus 141 L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 141 LINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred HHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 765556788999999999999999999987655 678888877764
No 379
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.011 Score=61.85 Aligned_cols=273 Identities=13% Similarity=0.118 Sum_probs=150.5
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce--EEeecCCCCCCCCCCCCHHHH-H---HHHHHHHhc--CC---
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ--ELVFSPPDGGLDENNISPEEK-L---RRERLRERG--LG--- 126 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~i~~~~~-~---~~~~~~~~~--~~--- 126 (776)
+.+..||||++|.-. |.+.++|.++|++.-.. .+-++.+. .....|+.|.. . ..+|....+ .|
T Consensus 55 t~ik~s~DGqY~lAt----G~YKP~ikvydlanLSLKFERhlDae~--V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLAT----GTYKPQIKVYDLANLSLKFERHLDAEV--VDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred ceeEecCCCcEEEEe----cccCCceEEEEcccceeeeeecccccc--eeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 688999999999743 55668899999875322 11111000 00111222210 0 000000000 01
Q ss_pred -------eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecC
Q 004067 127 -------VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLL 198 (776)
Q Consensus 127 -------~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~ 198 (776)
..++.++ .+.-..++......||+++++.|.--.++....+ .+.....++-...|++.. ++.+-.||..
T Consensus 129 ~~RIP~~GRDm~y~--~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYH--KPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeecCcCCcccccc--CCCccEEEeecCcceEEEEccccccccccccccc-cceeeeecCccceEEecccCceEEEecch
Confidence 1122222 1223333334667899999998875534443322 367788889888888877 5667888877
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+....-...-... +..-....+..-+.++.|+.||=.++..+..
T Consensus 206 ~ksrv~~l~~~~~------v~s~pg~~~~~svTal~F~d~gL~~aVGts~------------------------------ 249 (703)
T KOG2321|consen 206 DKSRVGTLDAASS------VNSHPGGDAAPSVTALKFRDDGLHVAVGTST------------------------------ 249 (703)
T ss_pred hhhhheeeecccc------cCCCccccccCcceEEEecCCceeEEeeccC------------------------------
Confidence 6654322211110 0011111222235678888888777765422
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe--EEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 279 GASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
..+++||+.+.++..+.- -.....+-.+.|-+.+. .++.. +...+.+||..+|+.-...+
T Consensus 250 ------G~v~iyDLRa~~pl~~kd-------h~~e~pi~~l~~~~~~~q~~v~S~-----Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 250 ------GSVLIYDLRASKPLLVKD-------HGYELPIKKLDWQDTDQQNKVVSM-----DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ------CcEEEEEcccCCceeecc-------cCCccceeeecccccCCCceEEec-----chHHhhhcccccCCceeecc
Confidence 457999999888766522 12234567788877532 44433 34458899999998766555
Q ss_pred eccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce
Q 004067 357 EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 404 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~ 404 (776)
...+ .+. +.+.+ +.+.+|++..++..+.|.+..=|..
T Consensus 312 pt~~----lND-~C~~p------~sGm~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 312 PTSD----LND-FCFVP------GSGMFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred ccCC----cCc-eeeec------CCceEEEecCCCcceeEEccccCCC
Confidence 4333 111 22211 5568888888888888887644443
No 380
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.57 E-value=0.0054 Score=60.96 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=103.5
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCC------CCCCCccCceeCCCCCEEEEEEC--CcEEEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSS------SSCSPVIDPHLSSDGTMIAFVRD--CELHVL 195 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~------~~~~~~~~~~~SpDg~~la~~~~--~~l~~~ 195 (776)
..+.+..|.| ++...||.. .|..|.+|.+-.+.....++. +...++..+.|.|-...+++.+. +.+.+|
T Consensus 82 ~~vLDi~w~P--fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 82 APVLDIDWCP--FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccCc--cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 4577889999 333444443 667788888754433323332 12235778999999888888764 569999
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecC
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAY 275 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (776)
++.+|+...-...+. .+.++.|+-||..|+....|
T Consensus 160 nv~tgeali~l~hpd------------------~i~S~sfn~dGs~l~TtckD--------------------------- 194 (472)
T KOG0303|consen 160 NVGTGEALITLDHPD------------------MVYSMSFNRDGSLLCTTCKD--------------------------- 194 (472)
T ss_pred eccCCceeeecCCCC------------------eEEEEEeccCCceeeeeccc---------------------------
Confidence 999998642111111 14478899999999887754
Q ss_pred CCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCc
Q 004067 276 PFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 350 (776)
Q Consensus 276 ~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~ 350 (776)
-.|.+||..++++..-.. ......-..+.|--+|+++....++- ...++-+||++.-+
T Consensus 195 ---------KkvRv~dpr~~~~v~e~~-------~heG~k~~Raifl~~g~i~tTGfsr~-seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 195 ---------KKVRVIDPRRGTVVSEGV-------AHEGAKPARAIFLASGKIFTTGFSRM-SERQIALWDPNNLE 252 (472)
T ss_pred ---------ceeEEEcCCCCcEeeecc-------cccCCCcceeEEeccCceeeeccccc-cccceeccCccccc
Confidence 347899999888765421 11122345678999998332222333 45678899986533
No 381
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.56 E-value=0.0021 Score=62.46 Aligned_cols=230 Identities=13% Similarity=0.067 Sum_probs=130.1
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCcee
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQR 203 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~ 203 (776)
.++.-..+. |++.+--..++.|.+||..+-+....|+.+ .+.+....| |.+-|+..+ +..+.+||+.+|+..
T Consensus 198 kgVYClQYD----D~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 198 KGVYCLQYD----DEKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CceEEEEec----chhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 355555554 344333347889999999887766345443 334555555 444333332 346999999999864
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
......-. .+..+.|+. ..++..+.|
T Consensus 271 ~tlihHce-----------------aVLhlrf~n--g~mvtcSkD----------------------------------- 296 (499)
T KOG0281|consen 271 NTLIHHCE-----------------AVLHLRFSN--GYMVTCSKD----------------------------------- 296 (499)
T ss_pred hHHhhhcc-----------------eeEEEEEeC--CEEEEecCC-----------------------------------
Confidence 32221110 133566653 344444433
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..+.|||+++....++.-- +.++...+..+.| |.|+|+.++ .+.+|..|++.+++..+.......+-.
T Consensus 297 -rsiaVWdm~sps~it~rrV-----LvGHrAaVNvVdf--d~kyIVsAS----gDRTikvW~~st~efvRtl~gHkRGIA 364 (499)
T KOG0281|consen 297 -RSIAVWDMASPTDITLRRV-----LVGHRAAVNVVDF--DDKYIVSAS----GDRTIKVWSTSTCEFVRTLNGHKRGIA 364 (499)
T ss_pred -ceeEEEeccCchHHHHHHH-----Hhhhhhheeeecc--ccceEEEec----CCceEEEEeccceeeehhhhcccccce
Confidence 3478888876542221100 2455556666666 556777665 677899999999987655443222111
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeec-cccCCeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~-lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
- .. -.++++.+...+. .|.+|+.+.|..-+ |..++.-+.-.. | |.+. ++++..++. +++
T Consensus 365 C----lQ--------Yr~rlvVSGSSDn--tIRlwdi~~G~cLRvLeGHEeLvRciR-F--d~kr-IVSGaYDGk--ikv 424 (499)
T KOG0281|consen 365 C----LQ--------YRDRLVVSGSSDN--TIRLWDIECGACLRVLEGHEELVRCIR-F--DNKR-IVSGAYDGK--IKV 424 (499)
T ss_pred e----hh--------ccCeEEEecCCCc--eEEEEeccccHHHHHHhchHHhhhhee-e--cCce-eeeccccce--EEE
Confidence 0 00 1344555444444 89999998877544 444443333332 4 4565 445555554 899
Q ss_pred EEEEe
Q 004067 443 YCAKL 447 (776)
Q Consensus 443 ~~~~~ 447 (776)
|.+..
T Consensus 425 Wdl~a 429 (499)
T KOG0281|consen 425 WDLQA 429 (499)
T ss_pred Eeccc
Confidence 99886
No 382
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.55 E-value=0.035 Score=53.21 Aligned_cols=174 Identities=11% Similarity=0.155 Sum_probs=104.8
Q ss_pred CCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC---EEEEEE-CCcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT---MIAFVR-DCELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~---~la~~~-~~~l~~~~l~ 198 (776)
.++.+..|=| =..-++.+ -+..|.+||..+-+....++. + +.+..-+|||=.. .||... +.++.+.|++
T Consensus 102 y~iss~~WyP---~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 102 YAISSAIWYP---IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-E-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred eeeeeeEEee---ecCceeecccccceEEEeecccceeeEEeec-C-ceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 4677777877 33334333 456789999998776523332 3 3478889999444 333332 3479999999
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCC
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFA 278 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (776)
+|...-...+... -+.++.|||-..++++....++....|.+.-..
T Consensus 177 SGs~sH~LsGHr~-----------------~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras----------------- 222 (397)
T KOG4283|consen 177 SGSFSHTLSGHRD-----------------GVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS----------------- 222 (397)
T ss_pred CCcceeeeccccC-----------------ceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------------
Confidence 9976544333321 155788999999999876544433333321110
Q ss_pred CCCCCeEEEEEEEcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 279 GASNVKVRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 279 g~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
..+.+.|...++ ...+.. -+.+.+-+..++|+.||.+++... .+..+..|+..+|+-+.
T Consensus 223 ------gcf~~lD~hn~k~~p~~~~------n~ah~gkvngla~tSd~~~l~~~g----td~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 223 ------GCFRVLDQHNTKRPPILKT------NTAHYGKVNGLAWTSDARYLASCG----TDDRIRVWNMESGRNTL 282 (397)
T ss_pred ------ceeEEeecccCccCccccc------cccccceeeeeeecccchhhhhcc----CccceEEeecccCcccc
Confidence 123333433221 111111 145667788999999999777654 45568889998887543
No 383
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00056 Score=76.88 Aligned_cols=204 Identities=10% Similarity=0.080 Sum_probs=123.6
Q ss_pred CceeEcCCCCE----EEEEeCCCCcCcceEEEEecCC---CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 58 TSIGFSPDDNL----ITYLLSPDHSLSRKVFSFDPKT---CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 58 ~~~~~SpDG~~----ia~~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
..++|++-|.. || +|...++|-+||++. +....+. .+.+.+...|...
T Consensus 68 ~kL~W~~~g~~~~GlIa-----GG~edG~I~ly~p~~~~~~~~~~~l--------------------a~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIA-----GGLEDGNIVLYDPASIIANASEEVL--------------------ATKSKHTGPVLGL 122 (1049)
T ss_pred eeeeecccCCCccceee-----ccccCCceEEecchhhccCcchHHH--------------------hhhcccCCceeee
Confidence 78899999988 76 444456899999864 2221111 1222344568889
Q ss_pred EEeecCCCce-EEEEe-CCCcEEEEeCCCCccceecCCC---CCCCccCceeCCCCCEEEEE-EC-CcEEEEecCCCc-e
Q 004067 131 EWVKTSSKKK-IIMVP-LPDGIYFQDLSCSKPELKLSSS---SCSPVIDPHLSSDGTMIAFV-RD-CELHVLNLLINE-Q 202 (776)
Q Consensus 131 ~~sp~~~dg~-~l~~~-~~~~l~~~d~~~~~~~~~l~~~---~~~~~~~~~~SpDg~~la~~-~~-~~l~~~~l~~g~-~ 202 (776)
.|++ .+. .|+.. .+++|++||+..-+. ..+.+ ....+..++|...-+.|+-. +. +..-+||+.-.+ +
T Consensus 123 DfN~---~q~nlLASGa~~geI~iWDlnn~~t--P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 123 DFNP---FQGNLLASGADDGEILIWDLNKPET--PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred eccc---cCCceeeccCCCCcEEEeccCCcCC--CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 9999 777 56654 678999999987333 33331 11236667777655544333 22 368888888653 2
Q ss_pred eEEeeCCCCCceecCCcccceecccCCcceEEECCCCC-eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 203 RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSK-FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 203 ~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
..++..+.. .....+.|.||.. +|+..+.+...
T Consensus 198 i~ls~~~~~----------------~~~S~l~WhP~~aTql~~As~dd~~------------------------------ 231 (1049)
T KOG0307|consen 198 IKLSDTPGR----------------MHCSVLAWHPDHATQLLVASGDDSA------------------------------ 231 (1049)
T ss_pred cccccCCCc----------------cceeeeeeCCCCceeeeeecCCCCC------------------------------
Confidence 233322210 0134788999975 55555433321
Q ss_pred CCeEEEEEEEcCC--CceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceE
Q 004067 282 NVKVRLGVVSAAG--GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 352 (776)
Q Consensus 282 ~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~ 352 (776)
..|.+||+.- .-.+. +..|+..+..++|++.+..+++.+. ++.+|+.|+.++|+.-
T Consensus 232 ---PviqlWDlR~assP~k~---------~~~H~~GilslsWc~~D~~lllSsg---kD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 232 ---PVIQLWDLRFASSPLKI---------LEGHQRGILSLSWCPQDPRLLLSSG---KDNRIICWNPNTGEVL 289 (1049)
T ss_pred ---ceeEeecccccCCchhh---------hcccccceeeeccCCCCchhhhccc---CCCCeeEecCCCceEe
Confidence 2356677531 11122 2467788999999998765555543 5667999999998853
No 384
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.52 E-value=0.014 Score=58.21 Aligned_cols=206 Identities=16% Similarity=0.135 Sum_probs=116.3
Q ss_pred CCCCCccCceeCC-CCCEEEEEECC-cEEEEecCC-CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 167 SSCSPVIDPHLSS-DGTMIAFVRDC-ELHVLNLLI-NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 167 ~~~~~~~~~~~Sp-Dg~~la~~~~~-~l~~~~l~~-g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
+..+.+....|+| +...||..++. .|.+|.+-. |..+.++. + -..+.|.. .++..+.|.|--..++
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte-p--vv~L~gH~--------rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE-P--VVELYGHQ--------RRVGLVQWHPTAPNVL 147 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc-c--eEEEeecc--------eeEEEEeecccchhhH
Confidence 3344577899999 44555555543 477776543 33333331 1 01122211 2345678888766665
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
..+. ....+.+|+..+|+...- ..+...+.+++|+-
T Consensus 148 lsag-----------------------------------~Dn~v~iWnv~tgeali~---------l~hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 148 LSAG-----------------------------------SDNTVSIWNVGTGEALIT---------LDHPDMVYSMSFNR 183 (472)
T ss_pred hhcc-----------------------------------CCceEEEEeccCCceeee---------cCCCCeEEEEEecc
Confidence 5432 115689999999985433 34778999999999
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCCceEEEE-EeccCceeecccccccCCCCccccCCeEEEEec--cCCceEEEEEeC
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE--KTGFRHLYLHDI 400 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~g~~~l~~~~~ 400 (776)
||..++.++ .+..|.+||+.+|++..-- .+.+.. + ..+.|.+++.++++. +-...++-+||.
T Consensus 184 dGs~l~Ttc----kDKkvRv~dpr~~~~v~e~~~heG~k---------~--~Raifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 184 DGSLLCTTC----KDKKVRVIDPRRGTVVSEGVAHEGAK---------P--ARAIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred CCceeeeec----ccceeEEEcCCCCcEeeecccccCCC---------c--ceeEEeccCceeeeccccccccceeccCc
Confidence 999887766 5667999999988754322 111110 0 001222333344442 233468888886
Q ss_pred CCce----eeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 401 NGTC----LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 401 ~g~~----~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
+.-+ ...|.... .+.- +-+++|.+.||.-+-.++. +.-|.+.
T Consensus 249 ~nl~eP~~~~elDtSn-Gvl~-PFyD~dt~ivYl~GKGD~~--IRYyEit 294 (472)
T KOG0303|consen 249 NNLEEPIALQELDTSN-GVLL-PFYDPDTSIVYLCGKGDSS--IRYFEIT 294 (472)
T ss_pred ccccCcceeEEeccCC-ceEE-eeecCCCCEEEEEecCCcc--eEEEEec
Confidence 5321 22333222 2332 3388888877776655543 5555554
No 385
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.52 E-value=0.19 Score=53.59 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=38.2
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEE-ECCcEEEEecCCCceeE
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFV-RDCELHVLNLLINEQRQ 204 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~-~~~~l~~~~l~~g~~~~ 204 (776)
++..+++. .++.||.+|.++|+........ ......|.. ++..+++. .++.|+.+|+++|+.+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence 45556554 6789999999888876222221 111222333 23344443 35679999999998653
No 386
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.51 E-value=0.0048 Score=65.29 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=122.9
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEe-ccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC---
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW-MHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD--- 360 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~--- 360 (776)
..+.+|+...+....+.. ...+..|+..++. .++...++... -+..|++||+++|..+.+...+.-
T Consensus 95 tTVK~W~~~~~~~~c~st------ir~H~DYVkcla~~ak~~~lvaSgG----LD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMST------IRTHKDYVKCLAYIAKNNELVASGG----LDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred ceEEEeecccCcchhHhh------hhcccchheeeeecccCceeEEecC----CCccEEEEEccCcchhhhhhccccccc
Confidence 557888887664222211 1457778888888 66665444332 456799999999865433221110
Q ss_pred cee--ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCc-eeeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 361 SWV--NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 361 ~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
... .-.+.|+ ++..+.+.++++.. -...|.+||..++ +...|-.+...|.-++ .+.||.+++-.++ ++.
T Consensus 165 sl~sG~k~siYS-----LA~N~t~t~ivsGg-tek~lr~wDprt~~kimkLrGHTdNVr~ll-~~dDGt~~ls~sS-Dgt 236 (735)
T KOG0308|consen 165 SLGSGPKDSIYS-----LAMNQTGTIIVSGG-TEKDLRLWDPRTCKKIMKLRGHTDNVRVLL-VNDDGTRLLSASS-DGT 236 (735)
T ss_pred cCCCCCccceee-----eecCCcceEEEecC-cccceEEeccccccceeeeeccccceEEEE-EcCCCCeEeecCC-Cce
Confidence 000 0011111 12223333443321 1237889997655 5677877777777766 8999998665554 433
Q ss_pred ceeeEEEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeeccCCCchhhhh
Q 004067 438 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIK 517 (776)
Q Consensus 438 ~~~~l~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 517 (776)
+.||.+.... ...+..-...+++....+|+-+.+.+..+. ..|++.++.+.+..+.+....++...+.
T Consensus 237 --IrlWdLgqQr------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd----~~i~~Tdl~n~~~~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 237 --IRLWDLGQQR------CLATYIVHKEGVWALQSSPSFTHVYSGGRD----GNIYRTDLRNPAKSTLICKEDAPVLKLH 304 (735)
T ss_pred --EEeeeccccc------eeeeEEeccCceEEEeeCCCcceEEecCCC----CcEEecccCCchhheEeecCCCchhhhh
Confidence 8888886411 122233334567788888887766554333 4699999887555566665555444332
Q ss_pred ccCCCCceEEEEEcCCC
Q 004067 518 RLQLEPPDIVQIQANDG 534 (776)
Q Consensus 518 ~~~~~~~~~~~~~~~dg 534 (776)
-.. ..+.+++.+.|+
T Consensus 305 ~~~--~~~~~WvtTtds 319 (735)
T KOG0308|consen 305 LHE--HDNSVWVTTTDS 319 (735)
T ss_pred hcc--ccCCceeeeccc
Confidence 211 123345555554
No 387
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.50 E-value=0.00031 Score=79.04 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=83.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc-cC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN-CG 615 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~-~~ 615 (776)
++..+|.|...... + .||++++|||.-...-...+ ........+.....+|+.+.||-. -.| |....... .+
T Consensus 97 LylNV~tp~~~~~~-~-~pV~V~iHGG~~~~gs~~~~--~~~~~~~~~~~~~VVvVt~~YRLG-~lG--F~st~d~~~~g 169 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES-K-LPVMVYIHGGGFQFGSASSF--EIISPAYVLLLKDVVVVTINYRLG-PLG--FLSTGDSAAPG 169 (545)
T ss_pred ceEEEeccCCCccC-C-CCEEEEEeCCceeeccccch--hhcCchhccccCCEEEEEecccce-ece--eeecCCCCCCC
Confidence 88999999875211 2 89999999975322110111 111123345567899999999842 111 11111111 24
Q ss_pred CccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCC
Q 004067 616 RIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 672 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~ 672 (776)
..-+.|+..|++|+.++ ..-|+++|.|+|||.||..+..++.. ...+|+.+|..++.
T Consensus 170 N~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 170 NLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 44578999999999886 33589999999999999999887763 12467777766654
No 388
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.50 E-value=0.00099 Score=65.52 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=60.9
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHHHHcCC
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQGL 634 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~ 634 (776)
.|+++|++.++.. .|..+++.+....+.|+.++++|.+...... ..++++.+. ++.+++..
T Consensus 2 ~lf~~p~~gG~~~-------~y~~la~~l~~~~~~v~~i~~~~~~~~~~~~----------~si~~la~~y~~~I~~~~- 63 (229)
T PF00975_consen 2 PLFCFPPAGGSAS-------SYRPLARALPDDVIGVYGIEYPGRGDDEPPP----------DSIEELASRYAEAIRARQ- 63 (229)
T ss_dssp EEEEESSTTCSGG-------GGHHHHHHHTTTEEEEEEECSTTSCTTSHEE----------SSHHHHHHHHHHHHHHHT-
T ss_pred eEEEEcCCccCHH-------HHHHHHHhCCCCeEEEEEEecCCCCCCCCCC----------CCHHHHHHHHHHHhhhhC-
Confidence 5788999877654 3455677776556999999999876222111 112332222 33333322
Q ss_pred CCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 671 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~ 671 (776)
...++.|+|||+||.+|..+|.+ ....+..++++.+
T Consensus 64 -~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 64 -PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp -SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred -CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 23489999999999999999864 2334566666663
No 389
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.017 Score=63.50 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=108.4
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC---cEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC---ELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~---~l~~~~l~~g~ 201 (776)
.+...+|.| .--+|+.+ ..+.|.+||..-+...-++..+++ +++.+.|.|++.. |++.+ .|-+|+.++..
T Consensus 11 RvKglsFHP---~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH~~qpl--FVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 11 RVKGLSFHP---KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFHPTQPL--FVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cccceecCC---CCCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeecCCCCe--EEecCCccEEEEEecccce
Confidence 456778999 77788876 567899999887765535555554 5999999999885 56554 37777766443
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
. ++. +.|.-++ ++...|.+.=-+|+..+.|
T Consensus 85 c---lft------L~GHlDY--------VRt~~FHheyPWIlSASDD--------------------------------- 114 (1202)
T KOG0292|consen 85 C---LFT------LLGHLDY--------VRTVFFHHEYPWILSASDD--------------------------------- 114 (1202)
T ss_pred e---hhh------hccccce--------eEEeeccCCCceEEEccCC---------------------------------
Confidence 2 111 1122222 4577788888888877754
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..|.+|+-.+++...+ ++++.+++...+|.|-...|+..+ -+.+|.+||+.+
T Consensus 115 ---QTIrIWNwqsr~~iav--------ltGHnHYVMcAqFhptEDlIVSaS----LDQTVRVWDisG 166 (1202)
T KOG0292|consen 115 ---QTIRIWNWQSRKCIAV--------LTGHNHYVMCAQFHPTEDLIVSAS----LDQTVRVWDISG 166 (1202)
T ss_pred ---CeEEEEeccCCceEEE--------EecCceEEEeeccCCccceEEEec----ccceEEEEeecc
Confidence 4589999988887665 378999999999999776777665 466799999855
No 390
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.49 E-value=0.0053 Score=66.48 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=81.1
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCch----hhh--hh
Q 004067 536 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL----KFE--AS 609 (776)
Q Consensus 536 ~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~----~~~--~~ 609 (776)
.|...++.|.+-. ++ . +.+ |+++..... .+...... ......+||+++.=|. ||..... .|. ..
T Consensus 16 ~i~fev~LP~~WN---gR--~-~~~-GgGG~~G~i-~~~~~~~~-~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~ 85 (474)
T PF07519_consen 16 NIRFEVWLPDNWN---GR--F-LQV-GGGGFAGGI-NYADGKAS-MATALARGYATASTDS-GHQGSAGSDDASFGNNPE 85 (474)
T ss_pred eEEEEEECChhhc---cC--e-EEE-CCCeeeCcc-cccccccc-cchhhhcCeEEEEecC-CCCCCcccccccccCCHH
Confidence 7888999998542 12 2 222 333322111 11110000 2345678999999995 4543321 121 11
Q ss_pred hhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 610 IKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 610 ~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
...+++...+.+...+.+.|.+. ....+.+-+..|.|-||-.++..|.++|+-|.++++.+|..+
T Consensus 86 ~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 86 ALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 22344444566666777777765 335678899999999999999999999999999999998754
No 391
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.47 E-value=0.00029 Score=74.78 Aligned_cols=87 Identities=14% Similarity=0.015 Sum_probs=61.9
Q ss_pred cchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHH
Q 004067 576 TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 655 (776)
Q Consensus 576 ~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 655 (776)
.|..+++.|++.||.+ ..|++|+|...+... .. ...++++.+.++.+.+.. ...++.|+||||||.++..+
T Consensus 109 ~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~-~~-----~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~f 179 (440)
T PLN02733 109 YFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSN-RL-----PETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCF 179 (440)
T ss_pred HHHHHHHHHHHcCCcc-CCCcccCCCCccccc-cH-----HHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHH
Confidence 4556788999999876 789999987654311 00 112566777777776653 34689999999999999999
Q ss_pred HhhCCCc----eEEEEEcCC
Q 004067 656 LARFPDV----FQCAVSGAP 671 (776)
Q Consensus 656 a~~~~~~----~~~~v~~~~ 671 (776)
+..+|+. ++..|.+++
T Consensus 180 l~~~p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 180 MSLHSDVFEKYVNSWIAIAA 199 (440)
T ss_pred HHHCCHhHHhHhccEEEECC
Confidence 9887763 466666554
No 392
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.46 E-value=0.0081 Score=64.24 Aligned_cols=246 Identities=13% Similarity=0.064 Sum_probs=138.0
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCC---CCCEEEEEECC-cEEEEecCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSS---DGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~Sp---Dg~~la~~~~~-~l~~~~l~~ 199 (776)
.|+.....|| ||++|+.. ..++|.++++..-+....+..++.. +....+|- .-+.||-.+.+ -|+++|+.-
T Consensus 460 ~G~R~~~vSp---~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE-ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 460 FGFRALAVSP---DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE-ILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cceEEEEECC---CcceecccCccCceEEEEehhhhhhhheecccce-eEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 4788999999 99999987 6688999999876655344444443 66667764 22344444433 478888765
Q ss_pred CceeEEeeCCCCCceecCCcccceecccCCcceEEECCCC--CeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCC
Q 004067 200 NEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDS--KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 277 (776)
Q Consensus 200 g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (776)
.-..+-|.++... -+.++.|.-.| .+.+.-..|+.
T Consensus 536 ny~l~qtld~HSs----------------sITsvKFa~~gln~~MiscGADks--------------------------- 572 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSS----------------SITSVKFACNGLNRKMISCGADKS--------------------------- 572 (1080)
T ss_pred ccchhhhhccccc----------------ceeEEEEeecCCceEEEeccCchh---------------------------
Confidence 4333323322110 02344454444 12211111111
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEe
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 357 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 357 (776)
..|...-+.+.-...... ...-....++++..-|..++++... .+..|.++|+++|+.+..++.
T Consensus 573 --------imFr~~qk~~~g~~f~r~----t~t~~ktTlYDm~Vdp~~k~v~t~c----QDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 573 --------IMFRVNQKASSGRLFPRH----TQTLSKTTLYDMAVDPTSKLVVTVC----QDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred --------hheehhccccCceecccc----ccccccceEEEeeeCCCcceEEEEe----cccceEEEeccccceeeeecc
Confidence 001111111100000000 0011223466788889888777766 355699999999998887764
Q ss_pred ccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCCCce-eeccccCCeEEEEEEeecCCCcEEEEEEccC
Q 004067 358 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLD 435 (776)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~g~~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~ 435 (776)
.... .+.. -.+.-|+.++|.... .+. +|.++|.-+|+ ..+.+.+...|.++- |++|=|+|+-.+.+
T Consensus 637 s~~~---eG~l-----IKv~lDPSgiY~atScsdk--tl~~~Df~sgEcvA~m~GHsE~VTG~k-F~nDCkHlISvsgD- 704 (1080)
T KOG1408|consen 637 SRDH---EGDL-----IKVILDPSGIYLATSCSDK--TLCFVDFVSGECVAQMTGHSEAVTGVK-FLNDCKHLISVSGD- 704 (1080)
T ss_pred cccC---CCce-----EEEEECCCccEEEEeecCC--ceEEEEeccchhhhhhcCcchheeeee-ecccchhheeecCC-
Confidence 3210 0000 012445666665542 233 89999966665 678888877788776 99999987666543
Q ss_pred CCceeeEEEEEe
Q 004067 436 GPLESHLYCAKL 447 (776)
Q Consensus 436 ~~~~~~l~~~~~ 447 (776)
+ =+-+|++++
T Consensus 705 g--CIFvW~lp~ 714 (1080)
T KOG1408|consen 705 G--CIFVWKLPL 714 (1080)
T ss_pred c--eEEEEECch
Confidence 3 266777765
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.11 Score=55.19 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=141.5
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
.++.++.+.|-.-++.-.- ..++|-+||-++.....-+...+ ..+.+..|-+
T Consensus 14 dRVKsVd~HPtePw~la~L-----ynG~V~IWnyetqtmVksfeV~~-----------------------~PvRa~kfia 65 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAAL-----YNGDVQIWNYETQTMVKSFEVSE-----------------------VPVRAAKFIA 65 (794)
T ss_pred CceeeeecCCCCceEEEee-----ecCeeEEEecccceeeeeeeecc-----------------------cchhhheeee
Confidence 3457888888888776322 23468888877765433222111 2455556666
Q ss_pred cCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC-cEEEEecCCCceeEEeeCCCCC
Q 004067 135 TSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC-ELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 135 ~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
-.++++.. .+.+|-+++..+++....+..++. .++.++..|.-.+++-.++. -|-+|+-+.+=....+..+.
T Consensus 66 ---RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-- 139 (794)
T KOG0276|consen 66 ---RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-- 139 (794)
T ss_pred ---ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc--
Confidence 77788776 556799999999887745555544 58899999999988887775 35555655553333344332
Q ss_pred ceecCCcccceecccCCcceEEECCC-CCeEEEEEecCC--------CCCeEEEeecCCCCCCCCCcceecCCCCCCC--
Q 004067 213 TVTHGLAEYIAQEEMDRKTGYWWSLD-SKFIAFTQVDSS--------EIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS-- 281 (776)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 281 (776)
..+ +..++|.|. -++.+..+.|++ ..+.+ ++.+++ .-++-+.|-..|+.
T Consensus 140 ------~Hy--------VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf--Tl~gHe----kGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 140 ------EHY--------VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF--TLEGHE----KGVNCVDYYTGGDKPY 199 (794)
T ss_pred ------ceE--------EEEEEecCCCccceeeeeccccEEEEEcCCCCCce--eeeccc----cCcceEEeccCCCcce
Confidence 222 336778884 456666655543 22222 223433 22344444333322
Q ss_pred ----CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 282 ----NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 282 ----~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
.....+.+||-.++...+. +.++...+..+.|.|.=-+++..+ .++++.+|+..|-..
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp~lpiiisgs----EDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHPELPIIISGS----EDGTVRIWNSKTYKL 261 (794)
T ss_pred EEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecCCCcEEEEec----CCccEEEecCcceeh
Confidence 2346689999988875443 256777888888988765555444 567788898776443
No 394
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.0034 Score=63.70 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=102.2
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC-------CCceEEEE--
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-------TGQRKVIL-- 355 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-------~g~~~~l~-- 355 (776)
..||+|.+.+|+.-.+ ...+-..++.+.||.||+.++..+ ++..+..|.+. ++.++.+.
T Consensus 103 g~lYlWelssG~LL~v--------~~aHYQ~ITcL~fs~dgs~iiTgs----kDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNV--------LSAHYQSITCLKFSDDGSHIITGS----KDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CcEEEEEeccccHHHH--------HHhhccceeEEEEeCCCcEEEecC----CCccEEEEEEEeecccccCCCccceeee
Confidence 4589999999986443 134556789999999999877666 45556666542 11122221
Q ss_pred EeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee-eccccCCeEEEEEEeecCCCcEEEEEEcc
Q 004067 356 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTL 434 (776)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~ 434 (776)
.+..-.- .+.....+. .+..+|++..+. .+.+|++..+.. ..++. +..... ...+|.++.+|+- +.
T Consensus 171 ~~HtlsI---TDl~ig~Gg-----~~~rl~TaS~D~--t~k~wdlS~g~LLlti~f-p~si~a-v~lDpae~~~yiG-t~ 237 (476)
T KOG0646|consen 171 SDHTLSI---TDLQIGSGG-----TNARLYTASEDR--TIKLWDLSLGVLLLTITF-PSSIKA-VALDPAERVVYIG-TE 237 (476)
T ss_pred ccCccee---EEEEecCCC-----ccceEEEecCCc--eEEEEEeccceeeEEEec-CCccee-EEEcccccEEEec-CC
Confidence 1111100 000101100 223566665555 888999888752 33332 222233 3478887765544 44
Q ss_pred CCCceeeEEEEEeCC-CCCCc----------cccceeecCCCC---eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 435 DGPLESHLYCAKLYP-DWNHT----------LEAPVKLTNGKG---KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 435 ~~~~~~~l~~~~~~~-~g~~~----------~~~~~~l~~~~~---~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
++ .+|..++.+ .|... .....-+..+.+ +.-+++|-||+.|+-.... +.+.+||....
T Consensus 238 ~G----~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d----g~VcvWdi~S~ 309 (476)
T KOG0646|consen 238 EG----KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED----GKVCVWDIYSK 309 (476)
T ss_pred cc----eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC----CCEEEEecchH
Confidence 33 455554421 11000 001222333322 4456999999877654332 56999998777
Q ss_pred ceeEeec
Q 004067 501 SLVLPLY 507 (776)
Q Consensus 501 ~~~~~l~ 507 (776)
+.++.+.
T Consensus 310 Q~iRtl~ 316 (476)
T KOG0646|consen 310 QCIRTLQ 316 (476)
T ss_pred HHHHHHh
Confidence 7666665
No 395
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.048 Score=57.90 Aligned_cols=210 Identities=16% Similarity=0.060 Sum_probs=131.8
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.+...+++|.+++-.... ...|.++|.++.....-.. .+.....+.++|
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~~~~~~~~------------------------vG~~P~~~~~~~ 125 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGD----SNTVSVIDTATNTVLGSIP------------------------VGLGPVGLAVDP 125 (381)
T ss_pred ccccceeeCCCCCeEEEecCC----CCeEEEEcCcccceeeEee------------------------eccCCceEEECC
Confidence 446788999999987654433 2579999966554432221 012345788999
Q ss_pred cCCCceEEEEeC----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCceeEEeeC
Q 004067 135 TSSKKKIIMVPL----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQRQLTHG 208 (776)
Q Consensus 135 ~~~dg~~l~~~~----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~~lt~~ 208 (776)
|++.+++.. ++.+.++|..+++....+..+. .....+++|||+++.... ++.|.+++..+....+ ...
T Consensus 126 ---~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~ 199 (381)
T COG3391 126 ---DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV 199 (381)
T ss_pred ---CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc
Confidence 999999873 3678899988887763322222 236789999999876666 4569999977666554 221
Q ss_pred CCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 209 ANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
........ ....+.++|||++++..-.... ...+.
T Consensus 200 ~~~~~~~~------------~P~~i~v~~~g~~~yV~~~~~~---------------------------------~~~v~ 234 (381)
T COG3391 200 GSLVGVGT------------GPAGIAVDPDGNRVYVANDGSG---------------------------------SNNVL 234 (381)
T ss_pred ccccccCC------------CCceEEECCCCCEEEEEeccCC---------------------------------CceEE
Confidence 11100000 1236789999997765432211 13578
Q ss_pred EEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE
Q 004067 289 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 353 (776)
Q Consensus 289 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~ 353 (776)
+.|..++........ .... .-..+..+|+|+.++..... ...+...|..+.....
T Consensus 235 ~id~~~~~v~~~~~~------~~~~-~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~~ 289 (381)
T COG3391 235 KIDTATGNVTATDLP------VGSG-APRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVVK 289 (381)
T ss_pred EEeCCCceEEEeccc------cccC-CCCceeECCCCCEEEEEecC---CCeEEEEeCCCCceee
Confidence 888888877765332 1222 33457889999977666433 3457778877755543
No 396
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.014 Score=61.37 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=46.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..++..|-|.+|| .|...+.|.+|.+.||...+.+... .-|..+.|+|
T Consensus 403 Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgRcvr~~~~d------------------------~~I~~vaw~P-- 451 (733)
T KOG0650|consen 403 VRSISVDPSGEWLA-----SGSDDGTVRIWEIATGRCVRTVQFD------------------------SEIRSVAWNP-- 451 (733)
T ss_pred EEEEEecCCcceee-----ecCCCCcEEEEEeecceEEEEEeec------------------------ceeEEEEecC--
Confidence 57888899999998 3433467999999999875544322 2478899998
Q ss_pred CCce--EEEEeCCCcEEEEeCC
Q 004067 137 SKKK--IIMVPLPDGIYFQDLS 156 (776)
Q Consensus 137 ~dg~--~l~~~~~~~l~~~d~~ 156 (776)
.++ .|+++....+++++..
T Consensus 452 -~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 452 -LSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred -CCCceeEEEEecCceEEeCcc
Confidence 444 4555555556666543
No 397
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.39 E-value=0.12 Score=50.04 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=73.6
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC-CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT-CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
+.++.++|||.-..+.-.+..+ .+|.+|++.. |.... . ....+...+....|+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD----~tVR~wevq~~g~~~~-k---------------------a~~~~~~PvL~v~Ws 81 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWD----GTVRIWEVQNSGQLVP-K---------------------AQQSHDGPVLDVCWS 81 (347)
T ss_pred cchheeEeccccCceEEecccC----CceEEEEEecCCcccc-h---------------------hhhccCCCeEEEEEc
Confidence 3458899999444443344444 5688888865 22211 0 011223568899999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCC-EEEEEE--CCcEEEEecCCC
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT-MIAFVR--DCELHVLNLLIN 200 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~-~la~~~--~~~l~~~~l~~g 200 (776)
. ||..++.. -++++.+|||.+++.. ++..+... +...+|-+-.. .++.+. +..|-.||....
T Consensus 82 d---dgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 82 D---DGSKVFSGGCDKQAKLWDLASGQVS-QVAAHDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred c---CCceEEeeccCCceEEEEccCCCee-eeeecccc-eeEEEEecCCCcceeEecccccceeecccCCC
Confidence 9 99777665 6788999999999888 77666553 77788876555 233332 234777776643
No 398
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.011 Score=60.12 Aligned_cols=217 Identities=11% Similarity=0.060 Sum_probs=118.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+..+.-+|+|.+++ .|.-..+||+|.+.+|+.-.+.. .+=..+.-..|+.
T Consensus 84 v~al~s~n~G~~l~-----ag~i~g~lYlWelssG~LL~v~~-----------------------aHYQ~ITcL~fs~-- 133 (476)
T KOG0646|consen 84 VHALASSNLGYFLL-----AGTISGNLYLWELSSGILLNVLS-----------------------AHYQSITCLKFSD-- 133 (476)
T ss_pred eeeeecCCCceEEE-----eecccCcEEEEEeccccHHHHHH-----------------------hhccceeEEEEeC--
Confidence 36778899999887 23234689999999998522111 1124688899999
Q ss_pred CCceEEEEe-CCCcEEEEeCCC-------CccceecC--CCCCCCccCceeCCCC--CEEEEEE-CCcEEEEecCCCcee
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSC-------SKPELKLS--SSSCSPVIDPHLSSDG--TMIAFVR-DCELHVLNLLINEQR 203 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~-------~~~~~~l~--~~~~~~~~~~~~SpDg--~~la~~~-~~~l~~~~l~~g~~~ 203 (776)
||..|+.. .|+.+.+|.+.. .... ++- ....-.+..+...+-| .+|+-++ ++-+.+|++..|...
T Consensus 134 -dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~-p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 134 -DGSHIITGSKDGAVLVWLLTDLVSADNDHSVK-PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred -CCcEEEecCCCccEEEEEEEeecccccCCCcc-ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99988876 778888887532 1111 111 1111124444444432 2343333 345889999988643
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.-...+.. ..+++..|-++.+ |....++......+.....+ ..+
T Consensus 212 lti~fp~s------------------i~av~lDpae~~~-yiGt~~G~I~~~~~~~~~~~-----------------~~~ 255 (476)
T KOG0646|consen 212 LTITFPSS------------------IKAVALDPAERVV-YIGTEEGKIFQNLLFKLSGQ-----------------SAG 255 (476)
T ss_pred EEEecCCc------------------ceeEEEcccccEE-EecCCcceEEeeehhcCCcc-----------------ccc
Confidence 21122221 4577888866654 44433332222111110000 000
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcc--eEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEE
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEE--YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVIL 355 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~ 355 (776)
.....++.+.-+...+ .++.+ .+..++.|-||..|+... .++.+++||..+... +.+.
T Consensus 256 -v~~k~~~~~~t~~~~~---------~Gh~~~~~ITcLais~DgtlLlSGd----~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 256 -VNQKGRHEENTQINVL---------VGHENESAITCLAISTDGTLLLSGD----EDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred -ccccccccccceeeee---------ccccCCcceeEEEEecCccEEEeeC----CCCCEEEEecchHHHHHHHh
Confidence 0011111222222222 34444 788999999998777654 566799999987654 4443
No 399
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.39 E-value=0.0052 Score=60.40 Aligned_cols=180 Identities=8% Similarity=0.120 Sum_probs=96.6
Q ss_pred EEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCce-EEEEEeccCce
Q 004067 286 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSW 362 (776)
Q Consensus 286 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~ 362 (776)
+|.+||..-..+. .+. =+...+..+.|+|-.. +|+... .+..|++||+.++.+ +.+.-.--.
T Consensus 168 ~i~IWD~~R~~Pv~sms---------wG~Dti~svkfNpvETsILas~~----sDrsIvLyD~R~~~Pl~KVi~~mRT-- 232 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMS---------WGADSISSVKFNPVETSILASCA----SDRSIVLYDLRQASPLKKVILTMRT-- 232 (433)
T ss_pred eeeecccccCCccceee---------cCCCceeEEecCCCcchheeeec----cCCceEEEecccCCccceeeeeccc--
Confidence 4677776543322 221 1233567789999776 444332 345699999988775 223221111
Q ss_pred eecccccccCCCCccccCCeEEEEe-ccCCceEEEEEeCCCc-eeeccccC-CeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 363 VNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGT-CLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~g~-~~~~lt~~-~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
..++|.+..+.|++ +++ .+||.+|...- .+..+-.+ ...|.++. |||.|+.+ ++++.+..
T Consensus 233 -----------N~IswnPeafnF~~a~ED--~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~Ef-vsgsyDks-- 295 (433)
T KOG0268|consen 233 -----------NTICWNPEAFNFVAANED--HNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQEF-VSGSYDKS-- 295 (433)
T ss_pred -----------cceecCccccceeecccc--ccceehhhhhhcccchhhcccceeEEEec-cCCCcchh-ccccccce--
Confidence 01134444456654 333 38999985421 12222222 23455554 99999974 45555543
Q ss_pred eeEEEEEeCCCCCCccccceeecC-CCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEeec
Q 004067 440 SHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 507 (776)
Q Consensus 440 ~~l~~~~~~~~g~~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 507 (776)
+.||.++- |.. .-...|. .+.+..+.||.|.++++..+..+ +|.+|.....+..-.++
T Consensus 296 IRIf~~~~---~~S---RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~----nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 296 IRIFPVNH---GHS---RDIYHTKRMQHVFCVKYSMDSKYIISGSDDG----NVRLWKAKASEKLGVIT 354 (433)
T ss_pred EEEeecCC---Ccc---hhhhhHhhhheeeEEEEeccccEEEecCCCc----ceeeeecchhhhcCCCC
Confidence 77887773 321 1111111 13467789999999887654443 46666554444433344
No 400
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.38 E-value=0.087 Score=51.95 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=41.7
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEE
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQL 205 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~l 205 (776)
+++++++. .++.|+.+|..+|+....... +. ...... ..++..+++.. ++.|+.+|..+|+...-
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-ccccee-eecccccccccceeeeEecccCCcceeee
Confidence 45555554 889999999988887623332 22 122222 34555665555 45799999999987543
No 401
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.38 E-value=0.0014 Score=63.83 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCCc--EEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~--~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
+..++||+||.... |.......++.....++ .++.+.+|..|.- ..+..... ........+...++.|.
T Consensus 17 ~~~vlvfVHGyn~~------f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d~~--~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 17 DKEVLVFVHGYNNS------FEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYDRE--SARFSGPALARFLRDLA 87 (233)
T ss_pred CCeEEEEEeCCCCC------HHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhhhh--hHHHHHHHHHHHHHHHH
Confidence 45799999995433 22222333444444444 7999999976542 11211111 01122445666666666
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhh----CC-----CceEEEEEcCCCCCcccccccccccccCCCCCCccchhcCC
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLAR----FP-----DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS 701 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~----~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (776)
+.. ...+|.|++||||+.+.+.++.. .. ..|..+++.+|-.+...+...
T Consensus 88 ~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~-------------------- 145 (233)
T PF05990_consen 88 RAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQ-------------------- 145 (233)
T ss_pred hcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHH--------------------
Confidence 553 45799999999999999988754 11 246677777776553222111
Q ss_pred hhhhhccCCCcEEEEecCCCCccC
Q 004067 702 VMHHVHKMKGKLLLVHGMIDENVH 725 (776)
Q Consensus 702 ~~~~~~~i~~P~lii~G~~D~~v~ 725 (776)
...+.+...++.+.+...|....
T Consensus 146 -~~~~~~~~~~itvy~s~~D~AL~ 168 (233)
T PF05990_consen 146 -LPDLGSSARRITVYYSRNDRALK 168 (233)
T ss_pred -HHHHhhcCCCEEEEEcCCchHHH
Confidence 11233444678888888886543
No 402
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.34 E-value=0.0082 Score=63.62 Aligned_cols=208 Identities=10% Similarity=0.077 Sum_probs=116.4
Q ss_pred CceEEEEe-CCCcEEEEeCCCCccc--eecCCCCCCCccCcee-CCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCC
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKPE--LKLSSSSCSPVIDPHL-SSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGN 212 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~-SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~ 212 (776)
+|+.++.. .+..|.+|+...+..- ..+-.+. ..+..+++ -++...+|-.. +.+|++||+.+|..+.+.....-.
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~-DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK-DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhccc-chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 77666654 6778999998766411 1332222 23555566 44544444332 468999999998664332211100
Q ss_pred --ceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEE
Q 004067 213 --TVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 290 (776)
Q Consensus 213 --~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 290 (776)
....|..+- +.+++-.+.|.-|+ + |+ -...|.+|
T Consensus 163 ~~sl~sG~k~s--------iYSLA~N~t~t~iv--s--------------Gg--------------------tek~lr~w 198 (735)
T KOG0308|consen 163 VNSLGSGPKDS--------IYSLAMNQTGTIIV--S--------------GG--------------------TEKDLRLW 198 (735)
T ss_pred cccCCCCCccc--------eeeeecCCcceEEE--e--------------cC--------------------cccceEEe
Confidence 000011111 11333334342211 1 10 01458999
Q ss_pred EcCCCc-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccc
Q 004067 291 SAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDC 368 (776)
Q Consensus 291 d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~ 368 (776)
|..+++ ...| .++...+..+..++||..++..+ .++.|.+||+..... ..+.-+....|.-..
T Consensus 199 Dprt~~kimkL---------rGHTdNVr~ll~~dDGt~~ls~s----SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~-- 263 (735)
T KOG0308|consen 199 DPRTCKKIMKL---------RGHTDNVRVLLVNDDGTRLLSAS----SDGTIRLWDLGQQRCLATYIVHKEGVWALQS-- 263 (735)
T ss_pred ccccccceeee---------eccccceEEEEEcCCCCeEeecC----CCceEEeeeccccceeeeEEeccCceEEEee--
Confidence 998865 4444 56778899999999999888776 467899999966543 333445555675321
Q ss_pred cccCCCCccccCCeEEEEeccCCceEEEEEeCCC-ceeeccccCCeEEE
Q 004067 369 FTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCLGPITEGDWMVE 416 (776)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g-~~~~~lt~~~~~~~ 416 (776)
+| +=..+|..+++| .||+.++.. .+.+.|-+.+..+.
T Consensus 264 -~~--------sf~~vYsG~rd~--~i~~Tdl~n~~~~tlick~daPv~ 301 (735)
T KOG0308|consen 264 -SP--------SFTHVYSGGRDG--NIYRTDLRNPAKSTLICKEDAPVL 301 (735)
T ss_pred -CC--------CcceEEecCCCC--cEEecccCCchhheEeecCCCchh
Confidence 01 112566677777 899999877 34444444444443
No 403
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.32 E-value=0.065 Score=52.35 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCeeeEEEeecCCCceE-EEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCCC
Q 004067 125 LGVTRYEWVKTSSKKKI-IMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLIN 200 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~-l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g 200 (776)
......+|+-.+.+|.= ++.. ..|-|+++|+..++....+- +.+..+..+.+.|+...|+..... .|.+|++.+.
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 35667889885554333 3333 55779999999888773333 334458899999998877776543 5999999988
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
....+. ++.. |.. +-+.++-|++||.+|+....
T Consensus 169 ~Cv~Vf-GG~e-----gHr--------deVLSvD~~~~gd~i~ScGm 201 (385)
T KOG1034|consen 169 VCVAVF-GGVE-----GHR--------DEVLSVDFSLDGDRIASCGM 201 (385)
T ss_pred eEEEEe-cccc-----ccc--------CcEEEEEEcCCCCeeeccCC
Confidence 776653 3322 121 11457789999998886543
No 404
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.32 E-value=0.17 Score=58.29 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=117.4
Q ss_pred cCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 55 VAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 55 ~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..+.++.|--|+..|.+....+ .|.+.|+++.....+...+ .||...+|||
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G-----~iilvd~et~~~eivg~vd------------------------~GI~aaswS~ 119 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALG-----DIILVDPETLELEIVGNVD------------------------NGISAASWSP 119 (1265)
T ss_pred cceEEEEEecccceEEEEecCC-----cEEEEcccccceeeeeecc------------------------CceEEEeecC
Confidence 3556777788888888776533 5888899888776666433 4899999999
Q ss_pred cCCCceEEEEeCC-CcEEEEeCC------------------------CCccceecCCCCC--------------------
Q 004067 135 TSSKKKIIMVPLP-DGIYFQDLS------------------------CSKPELKLSSSSC-------------------- 169 (776)
Q Consensus 135 ~~~dg~~l~~~~~-~~l~~~d~~------------------------~~~~~~~l~~~~~-------------------- 169 (776)
|++.+++... .+|++++-+ |.+.+ ++-...+
T Consensus 120 ---Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT-qfrgs~gr~~~~~~~~~ek~~~~~~~~ 195 (1265)
T KOG1920|consen 120 ---DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKET-QFRGSEGRQAARQKIEKEKALEQIEQD 195 (1265)
T ss_pred ---CCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccce-eeecchhhhcccccccccccccchhhc
Confidence 9999998854 445443320 11111 1110000
Q ss_pred CCccCceeCCCCCEEEEEE-----C-CcEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEE
Q 004067 170 SPVIDPHLSSDGTMIAFVR-----D-CELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIA 243 (776)
Q Consensus 170 ~~~~~~~~SpDg~~la~~~-----~-~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~ 243 (776)
..-..+.|--||+++|... + ..|-+|+-+ |.... +..+.. .....++|-|.|..|+
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-~se~~~----------------~l~~~LsWkPsgs~iA 257 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-TSEPVE----------------GLQHSLSWKPSGSLIA 257 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-ccCccc----------------ccccceeecCCCCeEe
Confidence 0112378888998888743 2 356666655 32211 111110 1123688999999988
Q ss_pred EEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEecc
Q 004067 244 FTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH 323 (776)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Sp 323 (776)
....+.+.. .|..+..++-+.-.+.++ .+.....+..++|..
T Consensus 258 ~iq~~~sd~---------------------------------~IvffErNGL~hg~f~l~-----~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 258 AIQCKTSDS---------------------------------DIVFFERNGLRHGEFVLP-----FPLDEKEVEELAWNS 299 (1265)
T ss_pred eeeecCCCC---------------------------------cEEEEecCCccccccccC-----CcccccchheeeecC
Confidence 776543321 244444444333222221 012222378899999
Q ss_pred CCeEEEEEEeecCceEEEEEEECCCCce
Q 004067 324 GNILTAQVLNRSQTKLKVLKFDIKTGQR 351 (776)
Q Consensus 324 Dg~~l~~~~~~~~~~~~l~~~d~~~g~~ 351 (776)
++..|+...... ....|.+|-...-.+
T Consensus 300 ~sdiLAv~~~~~-e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 300 NSDILAVVTSNL-ENSLVQLWTTGNYHW 326 (1265)
T ss_pred CCCceeeeeccc-ccceEEEEEecCeEE
Confidence 999777654333 233477776655443
No 405
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.034 Score=51.98 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=130.7
Q ss_pred CceEEEEe-CCCcEEEEeCCCCcc-c--eecCCCCCCCccCceeCC--CCCEEEEEE-CCcEEEEecCCCceeEEeeCCC
Q 004067 138 KKKIIMVP-LPDGIYFQDLSCSKP-E--LKLSSSSCSPVIDPHLSS--DGTMIAFVR-DCELHVLNLLINEQRQLTHGAN 210 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~~~~-~--~~l~~~~~~~~~~~~~Sp--Dg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~ 210 (776)
=|++|+.. .|+.|.+..+..+.. . ..|+.+. +++..+.|.- -|..||..+ ++++.+|.-++|.-.++.....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~-GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS-GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCC-CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh
Confidence 47788865 566677666654432 2 2455444 3577778865 788888776 5688999888885554432211
Q ss_pred CCceecCCcccceecccCCcceEEECCCCC--eEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEE
Q 004067 211 GNTVTHGLAEYIAQEEMDRKTGYWWSLDSK--FIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLG 288 (776)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 288 (776)
.. .-++.++|.|.+- .|+..+.| +.+.|.
T Consensus 101 h~---------------~SVNsV~wapheygl~LacasSD----------------------------------G~vsvl 131 (299)
T KOG1332|consen 101 HS---------------ASVNSVAWAPHEYGLLLACASSD----------------------------------GKVSVL 131 (299)
T ss_pred hc---------------ccceeecccccccceEEEEeeCC----------------------------------CcEEEE
Confidence 10 0145778988754 44444432 225566
Q ss_pred EEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccC---Ce-----------EEEEEEeecCceEEEEEEECCCCce--
Q 004067 289 VVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHG---NI-----------LTAQVLNRSQTKLKVLKFDIKTGQR-- 351 (776)
Q Consensus 289 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpD---g~-----------~l~~~~~~~~~~~~l~~~d~~~g~~-- 351 (776)
.++.+++... .+. ..+.-.+..++|.|- |. .++. +..+..+.+|+.+.+..
T Consensus 132 ~~~~~g~w~t~ki~--------~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS----gGcDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 132 TYDSSGGWTTSKIV--------FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS----GGCDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EEcCCCCccchhhh--------hccccccceeeecCcCCCccccccCcccccceeec----cCCccceeeeecCCcchhh
Confidence 6666643322 221 345666788999996 52 2221 12344566666666532
Q ss_pred -EEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecCCCcEE
Q 004067 352 -KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQV 428 (776)
Q Consensus 352 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~dg~~i 428 (776)
+.|..+. .|+.+ -.+.|.- ..+...+.+...+|.--||..+.+++. .+.|......+... +||..|..|
T Consensus 200 e~~l~~H~--dwVRD-VAwaP~~----gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v-SWS~sGn~L 271 (299)
T KOG1332|consen 200 ERTLEGHK--DWVRD-VAWAPSV----GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV-SWSLSGNIL 271 (299)
T ss_pred hhhhhhcc--hhhhh-hhhcccc----CCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE-EEeccccEE
Confidence 2233332 23321 2233321 112334555567884444444433332 33444434445554 499999977
Q ss_pred EEEEccCCCceeeEEEEEeCCCCC
Q 004067 429 YFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
.+.... +.+.||+=++ +|+
T Consensus 272 aVs~Gd---Nkvtlwke~~--~Gk 290 (299)
T KOG1332|consen 272 AVSGGD---NKVTLWKENV--DGK 290 (299)
T ss_pred EEecCC---cEEEEEEeCC--CCc
Confidence 766544 3478998887 553
No 406
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.29 E-value=0.048 Score=52.30 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=86.1
Q ss_pred ceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCc
Q 004067 81 RKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSK 159 (776)
Q Consensus 81 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~ 159 (776)
..|.+||..+-+....+..++ .+.+-.|||-+..-..|+.. .+.+|.+.|+.+|.
T Consensus 124 htlKVWDtnTlQ~a~~F~me~------------------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKMEG------------------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ceEEEeecccceeeEEeecCc------------------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 579999988877666665433 56777888844333344444 56789999999987
Q ss_pred cceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecC--CCceeEEeeCC-CCCceecCCcccceecccCCcceEE
Q 004067 160 PELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLL--INEQRQLTHGA-NGNTVTHGLAEYIAQEEMDRKTGYW 234 (776)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~--~g~~~~lt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (776)
-.-.|..+.. .+..+.|||...+++++.. +.+.+||+. +|-.+-|.... ...++.. ..-...+.+.+++
T Consensus 180 ~sH~LsGHr~-~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-----~n~ah~gkvngla 253 (397)
T KOG4283|consen 180 FSHTLSGHRD-GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-----TNTAHYGKVNGLA 253 (397)
T ss_pred ceeeeccccC-ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-----ccccccceeeeee
Confidence 6624544443 4888999999999999864 456666653 45444432211 1111111 0011124467899
Q ss_pred ECCCCCeEEEEEe
Q 004067 235 WSLDSKFIAFTQV 247 (776)
Q Consensus 235 wspDg~~l~~~~~ 247 (776)
|+.||.+++....
T Consensus 254 ~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 254 WTSDARYLASCGT 266 (397)
T ss_pred ecccchhhhhccC
Confidence 9999999886543
No 407
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.28 E-value=0.16 Score=55.84 Aligned_cols=266 Identities=14% Similarity=0.052 Sum_probs=151.1
Q ss_pred CceEEEEeCCCcEEEEeCCCCcccee-cCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCceeEEeeCCCCCcee
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELK-LSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINEQRQLTHGANGNTVT 215 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~-l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~~~~lt~~~~~~~~~ 215 (776)
||..+.-..+..|.+||...+..... +..+.+ .+....+..-+..|+-.+ +..+.+||..+|+...........
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--- 293 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--- 293 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce---
Confidence 35544445667788999999887733 444443 477777765344444444 567999999999887664432210
Q ss_pred cCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCC
Q 004067 216 HGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG 295 (776)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 295 (776)
....+-+...++-.+.| ..|.+|++.++
T Consensus 294 ----------------v~~~~~~~~~~~sgs~D------------------------------------~tVkVW~v~n~ 321 (537)
T KOG0274|consen 294 ----------------VRCLTIDPFLLVSGSRD------------------------------------NTVKVWDVTNG 321 (537)
T ss_pred ----------------EEEEEccCceEeeccCC------------------------------------ceEEEEeccCc
Confidence 01112222222221111 56899999988
Q ss_pred ceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCce-EEEEEeccCceeecccccccCCC
Q 004067 296 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDK 374 (776)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~ 374 (776)
....+. .++...+..+... +..++..+ .+..|.+||+.+++. +.+..+......-
T Consensus 322 ~~l~l~--------~~h~~~V~~v~~~--~~~lvsgs----~d~~v~VW~~~~~~cl~sl~gH~~~V~sl---------- 377 (537)
T KOG0274|consen 322 ACLNLL--------RGHTGPVNCVQLD--EPLLVSGS----YDGTVKVWDPRTGKCLKSLSGHTGRVYSL---------- 377 (537)
T ss_pred ceEEEe--------ccccccEEEEEec--CCEEEEEe----cCceEEEEEhhhceeeeeecCCcceEEEE----------
Confidence 876662 2366777777776 55666666 344799999998775 3444433322210
Q ss_pred CccccCCeEEEEeccCCceEEEEEeCCCc-ee-eccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCC
Q 004067 375 GVTKYSGGFIWASEKTGFRHLYLHDINGT-CL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 452 (776)
Q Consensus 375 ~~~~~~~~~~~~s~~~g~~~l~~~~~~g~-~~-~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~ 452 (776)
..++...++...-++ .|..||+.++ +. ..+..+..-+..+ ...++ ++..+..++. +++|+... ++
T Consensus 378 --~~~~~~~~~Sgs~D~--~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~-~Lvs~~aD~~--Ik~WD~~~---~~ 444 (537)
T KOG0274|consen 378 --IVDSENRLLSGSLDT--TIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDN-FLVSSSADGT--IKLWDAEE---GE 444 (537)
T ss_pred --EecCcceEEeeeecc--ceEeecCCchhhhhhhhcCCccccccc---ccccc-eeEecccccc--EEEeeccc---Cc
Confidence 111113555555554 8999999988 43 3444444333332 23344 4555555544 88997764 32
Q ss_pred CccccceeecCC--CCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEee
Q 004067 453 HTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 506 (776)
Q Consensus 453 ~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~l 506 (776)
..+.+... .++..+.+. +..++.+.... .+.++|...++..+.+
T Consensus 445 ----~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~---~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 445 ----CLRTLEGRHVGGVSALALG---KEEILCSSDDG---SVKLWDLRSGTLIRTL 490 (537)
T ss_pred ----eeeeeccCCcccEEEeecC---cceEEEEecCC---eeEEEecccCchhhhh
Confidence 34445442 234344444 44444444433 4777788888876655
No 408
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.21 E-value=0.087 Score=50.59 Aligned_cols=288 Identities=11% Similarity=0.060 Sum_probs=146.3
Q ss_pred CCeeeEEEeecCCCceEEEEe-----CCCcE--EEEeCCCCccceecCCCCCCCccCceeCCCCC----EEEEEECCcEE
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-----LPDGI--YFQDLSCSKPELKLSSSSCSPVIDPHLSSDGT----MIAFVRDCELH 193 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-----~~~~l--~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~----~la~~~~~~l~ 193 (776)
....+..||--...+-+|+.. .++.| ...|.++++....-+....-++....|.||.+ .|+-++...|.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LR 124 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLR 124 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEE
Confidence 345667787432234556665 33444 44565666665122211122366789999885 33344444444
Q ss_pred EEec--CCCceeEE--eeCCCCCceecCCcccceecccCCcceEEECC-CCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 194 VLNL--LINEQRQL--THGANGNTVTHGLAEYIAQEEMDRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 194 ~~~l--~~g~~~~l--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
+|.+ +.++.+.. ..+....... ....++-|.- |-+.|...+.|
T Consensus 125 lWri~~ee~~~~~~~~L~~~kns~~~------------aPlTSFDWne~dp~~igtSSiD-------------------- 172 (364)
T KOG0290|consen 125 LWRIGDEESRVELQSVLNNNKNSEFC------------APLTSFDWNEVDPNLIGTSSID-------------------- 172 (364)
T ss_pred EEeccCcCCceehhhhhccCcccccC------------CcccccccccCCcceeEeeccc--------------------
Confidence 4444 34443321 1111111111 1234556654 44455444433
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEE-EEEeecCceEEEEEEECC
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTA-QVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~l~~~d~~ 347 (776)
..--+||+++|..-.+.+ ++..++..+.+++|+.+|..++ .+. .++.+.++|+.
T Consensus 173 ----------------TTCTiWdie~~~~~~vkT-----QLIAHDKEV~DIaf~~~s~~~FASvg----aDGSvRmFDLR 227 (364)
T KOG0290|consen 173 ----------------TTCTIWDIETGVSGTVKT-----QLIAHDKEVYDIAFLKGSRDVFASVG----ADGSVRMFDLR 227 (364)
T ss_pred ----------------CeEEEEEEeeccccceee-----EEEecCcceeEEEeccCccceEEEec----CCCcEEEEEec
Confidence 234688888873211111 1256788899999999887443 333 45668889987
Q ss_pred CCceE-EEEEeccCceeecccccccCCCCccccCCeEEEEec-cCCceEEEEEeCC--CceeeccccCCeEEEEEEeecC
Q 004067 348 TGQRK-VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDIN--GTCLGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 348 ~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~--g~~~~~lt~~~~~~~~~~~~s~ 423 (776)
.-+-. .+.+...+. .+.. .++|......|.+. .-+...+.+.|.. ......|..+...|.++. |.|
T Consensus 228 ~leHSTIIYE~p~~~----~pLl-----RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa-WaP 297 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPS----TPLL-----RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA-WAP 297 (364)
T ss_pred ccccceEEecCCCCC----Ccce-----eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE-ecC
Confidence 76643 445543320 0000 01222222111111 1122356666643 344567777777787775 999
Q ss_pred CCcEEEEEEccCCCceeeEEEEEeCCCCCCc-cccceeecCCCCeEEEEEcCC-cCEEEEEe
Q 004067 424 ASGQVYFTGTLDGPLESHLYCAKLYPDWNHT-LEAPVKLTNGKGKHVAVLDHN-MRNFVDFH 483 (776)
Q Consensus 424 dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~l~~~~~~~~~~~spd-g~~l~~~~ 483 (776)
..+.-+.++..+. +.-||.++-- ...+ ..++..-+.+..++.++|++. +..++..+
T Consensus 298 hS~~hictaGDD~--qaliWDl~q~--~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 298 HSSSHICTAGDDC--QALIWDLQQM--PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCCceeeecCCcc--eEEEEecccc--cccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 8887788877664 3678888741 1100 011222233334677888854 33444443
No 409
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.21 E-value=0.0068 Score=55.64 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCC-CCchhhhhhhhhccCCccHHHHHHHHHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA-RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g-~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 633 (776)
-.|||+-| .+..... .....++..++.+.+|..+.+-++.+- ++|.. .+ ..+.+|+..+++++.-..
T Consensus 37 ~~vvfiGG-LgdgLl~---~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~---sl-----k~D~edl~~l~~Hi~~~~ 104 (299)
T KOG4840|consen 37 VKVVFIGG-LGDGLLI---CLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF---SL-----KDDVEDLKCLLEHIQLCG 104 (299)
T ss_pred EEEEEEcc-cCCCccc---cccHHHHHHHHhhccceeeeeeccccccccccc---cc-----cccHHHHHHHHHHhhccC
Confidence 35666655 3333221 223456788899999999999887542 13311 11 235788999999876554
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCCcc
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~~~ 676 (776)
. ...|+++|||-|..-.++++.. .+..+.++|+.+|+.|-.
T Consensus 105 f--St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 105 F--STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred c--ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 2 3489999999999999998843 466789999999998854
No 410
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.21 E-value=0.018 Score=57.13 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=96.0
Q ss_pred eeEEEeecCCCceEEEEeCCCcEEEEeCCCCccc---eecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCce
Q 004067 128 TRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPE---LKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQ 202 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~ 202 (776)
....||| ...|+.+--.-...||+|...+|... .+++.+. ..+..++|||..+.+.+.. ++-|.+||...+..
T Consensus 215 y~LdWSp-~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 215 YGLDWSP-IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred eeeeccc-ccccccccCccccceEeeeeccCceeecCccccccc-cchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 4678998 33343221113357999988887654 1444433 3588899999998887765 45699999988743
Q ss_pred e--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 203 R--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 203 ~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
+ ..+..... -++.++|+-+-..|++...+
T Consensus 293 ~~~~~~kAh~s-----------------DVNVISWnr~~~lLasG~Dd-------------------------------- 323 (440)
T KOG0302|consen 293 KAAVSTKAHNS-----------------DVNVISWNRREPLLASGGDD-------------------------------- 323 (440)
T ss_pred cceeEeeccCC-----------------ceeeEEccCCcceeeecCCC--------------------------------
Confidence 2 22221111 05578898887766654432
Q ss_pred CCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 281 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..+.+||+..-+..+ +-..+..+...|+.+.|+|....++.++. .+.+|.+||+..
T Consensus 324 ----Gt~~iwDLR~~~~~~-----pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWDlsv 379 (440)
T KOG0302|consen 324 ----GTLSIWDLRQFKSGQ-----PVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWDLSV 379 (440)
T ss_pred ----ceEEEEEhhhccCCC-----cceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEEEeec
Confidence 346788876433220 00012456778999999997653333322 455688899854
No 411
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.20 E-value=0.048 Score=53.22 Aligned_cols=199 Identities=8% Similarity=0.016 Sum_probs=103.4
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
++.++|.||.++|+.+.+.. ..|+.++.+|.-.+++.-. . ....-...+..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~----~~i~els~~G~vlr~i~l~-g----------------------~~D~EgI~y~g-- 74 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP----GEIYELSLDGKVLRRIPLD-G----------------------FGDYEGITYLG-- 74 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT----TEEEEEETT--EEEEEE-S-S-----------------------SSEEEEEE-S--
T ss_pred ccccEEcCCCCeEEEEECCC----CEEEEEcCCCCEEEEEeCC-C----------------------CCCceeEEEEC--
Confidence 58999999999998887755 4699999876555555421 0 12345677777
Q ss_pred CCceEEEEe-CCCcEEEEeCCC--Cccc----e--ecCCC--CCCCccCceeCCCCCEEEEEECC---cEEEEecCC--C
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSC--SKPE----L--KLSSS--SCSPVIDPHLSSDGTMIAFVRDC---ELHVLNLLI--N 200 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~--~~~~----~--~l~~~--~~~~~~~~~~SpDg~~la~~~~~---~l~~~~l~~--g 200 (776)
+|++++.. .++.|+++++.. .... . .+... .......++|.|.+++|..+... .||.++... .
T Consensus 75 -~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 75 -NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp -TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred -CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 78766666 467788888733 2211 0 11111 11125679999999998888764 377776522 1
Q ss_pred ceeEEeeCCCCCceecCCcccce-ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIA-QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAG 279 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 279 (776)
..... ... .|.. ...+.-..++++.|....|+..+...
T Consensus 154 ~~~~~-~~~----------~~~~~~~~~~d~S~l~~~p~t~~lliLS~es------------------------------ 192 (248)
T PF06977_consen 154 DLFVS-DDQ----------DLDDDKLFVRDLSGLSYDPRTGHLLILSDES------------------------------ 192 (248)
T ss_dssp --EEE-E-H----------HHH-HT--SS---EEEEETTTTEEEEEETTT------------------------------
T ss_pred ceeec-ccc----------ccccccceeccccceEEcCCCCeEEEEECCC------------------------------
Confidence 11111 100 0000 00011145788999988888877322
Q ss_pred CCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 280 ASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 280 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
..|..+|.++.-...+.+..+...+.........+++.+||+ |++++
T Consensus 193 -----~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvs 239 (248)
T PF06977_consen 193 -----RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVS 239 (248)
T ss_dssp -----TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE
T ss_pred -----CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEc
Confidence 246777766665566665432211122223456799999996 55554
No 412
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.19 E-value=0.0016 Score=70.87 Aligned_cols=116 Identities=21% Similarity=0.202 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccC----CccHHHHHHHHHHH
Q 004067 554 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG----RIDAEDQLTGAEWL 629 (776)
Q Consensus 554 ~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~----~~~~~D~~~~i~~l 629 (776)
.|++|++-|- +... ..+.. .........+.|-.++++.+|-.|.|-. +......++. .+.++|+..+++++
T Consensus 29 gpifl~~ggE-~~~~--~~~~~-~~~~~~lA~~~~a~~v~lEHRyYG~S~P-~~~~s~~nL~yLt~~QALaD~a~F~~~~ 103 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIE--PFWIN-NGFMWELAKEFGALVVALEHRYYGKSQP-FGDLSTENLRYLTSEQALADLAYFIRYV 103 (434)
T ss_dssp SEEEEEE--S-S-HH--HHHHH--HHHHHHHHHHTEEEEEE--TTSTTB-T-TGGGGGSTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-Cccc--hhhhc-CChHHHHHHHcCCcEEEeehhhhcCCCC-ccccchhhHHhcCHHHHHHHHHHHHHHH
Confidence 5888887552 3221 11111 1133445557799999999998887742 2222222222 23477888888888
Q ss_pred HHcC-CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCC
Q 004067 630 IKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 674 (776)
Q Consensus 630 ~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~ 674 (776)
..+. ..+..+++++|.||||.+|.++-.++|++|.++++.++...
T Consensus 104 ~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 104 KKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 8653 33556999999999999999999999999999998876654
No 413
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.16 E-value=0.18 Score=49.24 Aligned_cols=152 Identities=11% Similarity=0.154 Sum_probs=92.5
Q ss_pred CeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccce-ecCC--CCCCCccCceeCC--CCCEEEEEEC--CcEEEEecC
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPEL-KLSS--SSCSPVIDPHLSS--DGTMIAFVRD--CELHVLNLL 198 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~-~l~~--~~~~~~~~~~~Sp--Dg~~la~~~~--~~l~~~~l~ 198 (776)
.+.+...++ .+|++...+.||+|.....-... .+.. ++.+ --..+| +...|||-.. ++|-++++.
T Consensus 96 ~I~~V~l~r-----~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG---lC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 96 EIKAVKLRR-----DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG---LCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred ceeeEEEcC-----CeEEEEecCeEEEEEcCCChhheeeeecccCCCc---eEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 466666654 67888889999999876432221 2211 1211 223333 4446666543 578888887
Q ss_pred CCcee--EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 INEQR--QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~g~~~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
..... .+...... .+.-++.+-+|..||..+..+
T Consensus 168 ~~~~~~p~~I~AH~s-----------------~Iacv~Ln~~Gt~vATaStkG--------------------------- 203 (346)
T KOG2111|consen 168 STKPNAPSIINAHDS-----------------DIACVALNLQGTLVATASTKG--------------------------- 203 (346)
T ss_pred hcCcCCceEEEcccC-----------------ceeEEEEcCCccEEEEeccCc---------------------------
Confidence 65542 22222211 133567888999888776422
Q ss_pred CCCCCCCeEEEEEEEcCCCceEE-EEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.-|.+||..+|+... +.-. .....++.++||||+.+|+..+ +.++|.++.+..
T Consensus 204 --------TLIRIFdt~~g~~l~E~RRG-------~d~A~iy~iaFSp~~s~LavsS----dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 204 --------TLIRIFDTEDGTLLQELRRG-------VDRADIYCIAFSPNSSWLAVSS----DKGTLHIFSLRD 257 (346)
T ss_pred --------EEEEEEEcCCCcEeeeeecC-------CchheEEEEEeCCCccEEEEEc----CCCeEEEEEeec
Confidence 458999999887543 3221 2235789999999999998887 444566666543
No 414
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.16 E-value=0.072 Score=54.85 Aligned_cols=180 Identities=9% Similarity=0.050 Sum_probs=107.7
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 364 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 364 (776)
..+.+||+..+.+.+. +.++...+..+.+--...+|+.++ ..++|.+..++++....-+.+....-+
T Consensus 101 ~~Vkiwdl~~kl~hr~--------lkdh~stvt~v~YN~~DeyiAsvs----~gGdiiih~~~t~~~tt~f~~~sgqsv- 167 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRF--------LKDHQSTVTYVDYNNTDEYIASVS----DGGDIIIHGTKTKQKTTTFTIDSGQSV- 167 (673)
T ss_pred ceeeehhhHHHHHhhh--------ccCCcceeEEEEecCCcceeEEec----cCCcEEEEecccCccccceecCCCCeE-
Confidence 3478899886554443 245666777777766666777776 345688888888765443333322111
Q ss_pred cccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee--ccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeE
Q 004067 365 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG--PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 442 (776)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~--~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l 442 (776)
.--.|++. ...++-+...+| .+-+||..|..+. ....+...-.++ .|+|....|+++-..+. +|
T Consensus 168 Rll~ys~s-------kr~lL~~asd~G--~VtlwDv~g~sp~~~~~~~HsAP~~gi-cfspsne~l~vsVG~Dk----ki 233 (673)
T KOG4378|consen 168 RLLRYSPS-------KRFLLSIASDKG--AVTLWDVQGMSPIFHASEAHSAPCRGI-CFSPSNEALLVSVGYDK----KI 233 (673)
T ss_pred EEeecccc-------cceeeEeeccCC--eEEEEeccCCCcccchhhhccCCcCcc-eecCCccceEEEecccc----eE
Confidence 01123332 222454555667 6777787765432 222222222344 49999888887776653 45
Q ss_pred EEEEeCCCCCCccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 443 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
+..+. ... +...+|+-......++|+++|.+|+...+. ++|+.+|...-
T Consensus 234 ~~yD~--~s~---~s~~~l~y~~Plstvaf~~~G~~L~aG~s~----G~~i~YD~R~~ 282 (673)
T KOG4378|consen 234 NIYDI--RSQ---ASTDRLTYSHPLSTVAFSECGTYLCAGNSK----GELIAYDMRST 282 (673)
T ss_pred EEeec--ccc---cccceeeecCCcceeeecCCceEEEeecCC----ceEEEEecccC
Confidence 55554 211 245677766666789999999988877554 57999997643
No 415
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.16 E-value=0.015 Score=56.65 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=58.1
Q ss_pred CcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 54 YVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 54 ~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
|..++.+++-|+--.+.-....+ ..|.+|++.+.....++.--. .+..-+.+..|+
T Consensus 135 G~sINeik~~p~~~qlvls~SkD----~svRlwnI~~~~Cv~VfGG~e--------------------gHrdeVLSvD~~ 190 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKD----HSVRLWNIQTDVCVAVFGGVE--------------------GHRDEVLSVDFS 190 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCC----ceEEEEeccCCeEEEEecccc--------------------cccCcEEEEEEc
Confidence 35578999999986665443323 579999999998877774111 112357899999
Q ss_pred ecCCCceEEEEe-CCCcEEEEeCCCCcc
Q 004067 134 KTSSKKKIIMVP-LPDGIYFQDLSCSKP 160 (776)
Q Consensus 134 p~~~dg~~l~~~-~~~~l~~~d~~~~~~ 160 (776)
+ ||.+|+.. -|-.|.+|++...+.
T Consensus 191 ~---~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 191 L---DGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred C---CCCeeeccCCcceEEEEecChhHH
Confidence 9 99999977 566799999886543
No 416
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.15 E-value=0.045 Score=53.47 Aligned_cols=195 Identities=13% Similarity=0.068 Sum_probs=92.8
Q ss_pred ccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 172 VIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
++.+.|.||.+.|+.+.+. .|+.+++++.-.+++...+.++ .+++++.-+|+.++ .. +
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D-----------------~EgI~y~g~~~~vl-~~--E 83 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGD-----------------YEGITYLGNGRYVL-SE--E 83 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SS-----------------EEEEEE-STTEEEE-EE--T
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCC-----------------ceeEEEECCCEEEE-EE--c
Confidence 7889999999999999885 5999998765566665544221 45778877775333 33 2
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEc--CCCc-----eEEEEcccCCCCCCCCcceEEEEEec
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSA--AGGP-----VSWMDLQCGGTDQNYDEEYLARVNWM 322 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~--~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~S 322 (776)
... .|+++++ .+.. ...+.+.. ..........++|.
T Consensus 84 r~~---------------------------------~L~~~~~~~~~~~~~~~~~~~~~l~~----~~~~N~G~EGla~D 126 (248)
T PF06977_consen 84 RDQ---------------------------------RLYIFTIDDDTTSLDRADVQKISLGF----PNKGNKGFEGLAYD 126 (248)
T ss_dssp TTT---------------------------------EEEEEEE----TT--EEEEEEEE-------S---SS--EEEEEE
T ss_pred CCC---------------------------------cEEEEEEeccccccchhhceEEeccc----ccCCCcceEEEEEc
Confidence 211 2333333 1211 12232220 01244567889999
Q ss_pred cCCeEEEEEEeecCceEEEEEEECC--CCceEEEEEeccCceee-cccccccCCCCccccCCeEEEEeccCCceEEEEEe
Q 004067 323 HGNILTAQVLNRSQTKLKVLKFDIK--TGQRKVILVEELDSWVN-LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD 399 (776)
Q Consensus 323 pDg~~l~~~~~~~~~~~~l~~~d~~--~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~ 399 (776)
|.++.++.+..+ ....||.++.. .......... .|.. ......+.+-.+....+.++..|+.+. .|..+|
T Consensus 127 ~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~--~l~~~d 199 (248)
T PF06977_consen 127 PKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQ---DLDDDKLFVRDLSGLSYDPRTGHLLILSDESR--LLLELD 199 (248)
T ss_dssp TTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-H---HHH-HT--SS---EEEEETTTTEEEEEETTTT--EEEEE-
T ss_pred CCCCEEEEEeCC--CChhhEEEccccCccceeecccc---ccccccceeccccceEEcCCCCeEEEEECCCC--eEEEEC
Confidence 988777766543 45668888862 2222222111 1110 000111111111223455777787766 788888
Q ss_pred CCCcee--eccccCC-------eEEEEEEeecCCCcEEEEEE
Q 004067 400 INGTCL--GPITEGD-------WMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 400 ~~g~~~--~~lt~~~-------~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+|... ..|..+. ....++ +++++|+ ||+.+
T Consensus 200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGI-a~d~~G~-LYIvs 239 (248)
T PF06977_consen 200 RQGRVVSSLSLDRGFHGLSKDIPQPEGI-AFDPDGN-LYIVS 239 (248)
T ss_dssp TT--EEEEEE-STTGGG-SS---SEEEE-EE-TT---EEEEE
T ss_pred CCCCEEEEEEeCCcccCcccccCCccEE-EECCCCC-EEEEc
Confidence 777643 3444421 113344 3888885 56665
No 417
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.15 E-value=0.00053 Score=45.40 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.9
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEE
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFS 85 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~ 85 (776)
..|.|||||++|+|.+...+.+..+||+
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 6899999999999999877333467774
No 418
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.15 E-value=0.043 Score=59.79 Aligned_cols=132 Identities=9% Similarity=-0.059 Sum_probs=75.8
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
.+=++|||+.+.-. ......+-.+|.++.+. .++.- +.+.....++|
T Consensus 197 ~~PlpnDGk~l~~~----~ey~~~vSvID~etmeV~~qV~V-------------------------dgnpd~v~~sp--- 244 (635)
T PRK02888 197 RIPLPNDGKDLDDP----KKYRSLFTAVDAETMEVAWQVMV-------------------------DGNLDNVDTDY--- 244 (635)
T ss_pred ccccCCCCCEeecc----cceeEEEEEEECccceEEEEEEe-------------------------CCCcccceECC---
Confidence 33479999977422 22245677888887654 22221 12334567889
Q ss_pred CceEEEEeC-----CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCC----C-ceeEEee
Q 004067 138 KKKIIMVPL-----PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLI----N-EQRQLTH 207 (776)
Q Consensus 138 dg~~l~~~~-----~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~----g-~~~~lt~ 207 (776)
||++++++. ...+..++....... +.... .....+.+||+.. ++..+.+-++|..+ + +......
T Consensus 245 dGk~afvTsyNsE~G~tl~em~a~e~d~~--vvfni---~~iea~vkdGK~~-~V~gn~V~VID~~t~~~~~~~v~~yIP 318 (635)
T PRK02888 245 DGKYAFSTCYNSEEGVTLAEMMAAERDWV--VVFNI---ARIEEAVKAGKFK-TIGGSKVPVVDGRKAANAGSALTRYVP 318 (635)
T ss_pred CCCEEEEeccCcccCcceeeeccccCceE--EEEch---HHHHHhhhCCCEE-EECCCEEEEEECCccccCCcceEEEEE
Confidence 999998873 223444444332221 11111 1123667899964 45566799999887 3 2332222
Q ss_pred CCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 208 GANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
-+.. ..++..||||++++...
T Consensus 319 VGKs------------------PHGV~vSPDGkylyVan 339 (635)
T PRK02888 319 VPKN------------------PHGVNTSPDGKYFIANG 339 (635)
T ss_pred CCCC------------------ccceEECCCCCEEEEeC
Confidence 2221 34788999999887654
No 419
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.11 E-value=0.018 Score=56.98 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=59.0
Q ss_pred cCCCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 708 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 708 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
...+|-|.+++..|.+++....+++++..++.|.+++...+++..|.-....+++++++.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 33579999999999999999999999999999999999999999998877788999999998874
No 420
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.10 E-value=0.03 Score=60.76 Aligned_cols=269 Identities=11% Similarity=-0.008 Sum_probs=151.4
Q ss_pred CceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCC
Q 004067 58 TSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSS 137 (776)
Q Consensus 58 ~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 137 (776)
..++-.+|-..|+-.... -..||.++..+..+......+. .+.+ .....++.|.. .
T Consensus 43 nAIs~nr~~~qiv~AGrs----~lklyai~~~~~~~~~~~~~k~----kqn~--------------~~S~~DVkW~~--~ 98 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGRS----LLKLYAINPNDFSEKCNHRFKT----KQNK--------------FYSAADVKWGQ--L 98 (839)
T ss_pred ceEeecCCcceeEEeccc----ceeeEeeCcccCCcceeeeccc----ccce--------------eeehhhccccc--c
Confidence 344556777777654331 2467777777665544332111 0000 11344566763 3
Q ss_pred CceEEEEe-CCCcEEEEeCCC--Cccc-eecCCCCCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCC
Q 004067 138 KKKIIMVP-LPDGIYFQDLSC--SKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANG 211 (776)
Q Consensus 138 dg~~l~~~-~~~~l~~~d~~~--~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~ 211 (776)
+...|+.. .++.|-+||+.- .+.. ..+..++. .+..+.|++-...|+..... -|-.||+.....++.+.....
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER-SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhcc-ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 56666655 667899999976 2221 12333333 37789999988888877654 488888887766665543221
Q ss_pred CceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEE
Q 004067 212 NTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVS 291 (776)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d 291 (776)
-++.+.|||--...++...+. .-|.+||
T Consensus 178 -----------------SiRDV~fsp~~~~~F~s~~ds-----------------------------------G~lqlWD 205 (839)
T KOG0269|consen 178 -----------------SIRDVKFSPGYGNKFASIHDS-----------------------------------GYLQLWD 205 (839)
T ss_pred -----------------hhhceeeccCCCceEEEecCC-----------------------------------ceEEEee
Confidence 156788999654443333333 2366777
Q ss_pred cCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeeccccccc
Q 004067 292 AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTP 371 (776)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 371 (776)
+.--...... +..+.+.+..+.|+|++.+|+... .+..+.+||..++....+..-+.. .....-.|.|
T Consensus 206 lRqp~r~~~k-------~~AH~GpV~c~nwhPnr~~lATGG----RDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP 273 (839)
T KOG0269|consen 206 LRQPDRCEKK-------LTAHNGPVLCLNWHPNREWLATGG----RDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRP 273 (839)
T ss_pred ccCchhHHHH-------hhcccCceEEEeecCCCceeeecC----CCccEEEEeccCCCccceeEEeec-ceeeeeeecc
Confidence 6533221111 257888899999999887776553 466799999987776554332211 0011112333
Q ss_pred CCCCccccCCeEEEEeccCCceEEEEEeCCCce--eeccccCCeEEEEEEeecC
Q 004067 372 LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNE 423 (776)
Q Consensus 372 ~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~--~~~lt~~~~~~~~~~~~s~ 423 (776)
... ..+.++.--+...|++||+.-.= ...+..+...+... +|..
T Consensus 274 ~~~-------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i-~W~~ 319 (839)
T KOG0269|consen 274 ARS-------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI-AWDS 319 (839)
T ss_pred Ccc-------chhhhhhccccceEEEEeeccccccceeeeccCccccce-eccC
Confidence 211 23444555566789999976442 23344444444444 3644
No 421
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.08 E-value=0.14 Score=54.64 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=48.0
Q ss_pred CCeeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCcccee-cCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELK-LSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~-l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~ 198 (776)
..+.+..|.| |+..++. .+..+..||+.+++.+.. +-.+....+....|.|+.+.+..+. ++++.+||..
T Consensus 101 nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 101 NAIFDLKWAP----GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred ceeEeeccCC----CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 4577899998 5544444 566799999999888721 2223333578899999998765553 4567777764
No 422
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.05 E-value=0.2 Score=53.67 Aligned_cols=64 Identities=6% Similarity=-0.091 Sum_probs=37.0
Q ss_pred CceEEEEeCCCcEEEEeCCCCccceecCCCCCC----CccCceeCCCCCEEEEE-ECCcEEEEecCCCcee
Q 004067 138 KKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCS----PVIDPHLSSDGTMIAFV-RDCELHVLNLLINEQR 203 (776)
Q Consensus 138 dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~----~~~~~~~SpDg~~la~~-~~~~l~~~~l~~g~~~ 203 (776)
++..++...++.|+.+|.++|+..-........ ....|... ++ .+++. .++.++.+++++|+..
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~~~g~v~a~d~~~G~~~ 228 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGGDNGRVSAVLMEQGQLI 228 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEcCCCEEEEEEccCChhh
Confidence 565555556788999999998876333221100 01233333 23 33333 3457999999998764
No 423
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.082 Score=49.52 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCC--CCCCccCceeCCCCCEEEE--EE-CCcEEEEe
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSS--SCSPVIDPHLSSDGTMIAF--VR-DCELHVLN 196 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~~~~SpDg~~la~--~~-~~~l~~~~ 196 (776)
..+-...|..+.+ |..|+.. .++++.+|.-++|.-. ++-.. ....+..++|.|.+-.+.. .+ +++|-+++
T Consensus 57 GPVwqv~wahPk~-G~iLAScsYDgkVIiWke~~g~w~-k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 57 GPVWKVAWAHPKF-GTILASCSYDGKVIIWKEENGRWT-KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred CCeeEEeeccccc-CcEeeEeecCceEEEEecCCCchh-hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 3566777765444 7777765 7889999998888655 32211 1234777888886654333 22 34444443
No 424
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.01 E-value=0.076 Score=52.36 Aligned_cols=225 Identities=15% Similarity=0.040 Sum_probs=112.5
Q ss_pred CCcEEEEeCCCCccceecCCCCCCCccCce--eCCCCCEEEEE-ECCcEEEEecCCCceeEEeeCCCCCceecCCcccce
Q 004067 147 PDGIYFQDLSCSKPELKLSSSSCSPVIDPH--LSSDGTMIAFV-RDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIA 223 (776)
Q Consensus 147 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~--~SpDg~~la~~-~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~ 223 (776)
++.|..+|+.+|+..-.....+ ....+. ..++++.++.. .++.|+.+|..+|+...-...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~------------ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP------------ 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC------------
T ss_pred CCEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc------------
Confidence 4678888887777652332211 122333 44466666665 456899999999986543332221
Q ss_pred ecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEE-Ec
Q 004067 224 QEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM-DL 302 (776)
Q Consensus 224 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l-~~ 302 (776)
.... -..++..|++...+ ..|+.+|..+|+...- ..
T Consensus 68 ------~~~~-~~~~~~~v~v~~~~------------------------------------~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 68 ------ISGA-PVVDGGRVYVGTSD------------------------------------GSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ------GGSG-EEEETTEEEEEETT------------------------------------SEEEEEETTTSCEEEEEEE
T ss_pred ------ccce-eeecccccccccce------------------------------------eeeEecccCCcceeeeecc
Confidence 0000 12345566655421 2578999888887654 22
Q ss_pred ccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCe
Q 004067 303 QCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG 382 (776)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (776)
... .............+++.+++.. ....|+.+|+++|+..--.....+.....-..+......+...++
T Consensus 105 ~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (238)
T PF13360_consen 105 TSS-----PPAGVRSSSSPAVDGDRLYVGT----SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG- 174 (238)
T ss_dssp -SS-----CTCSTB--SEEEEETTEEEEEE----TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-
T ss_pred ccc-----cccccccccCceEecCEEEEEe----ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-
Confidence 110 0111122233333465555554 255699999999987433322221100000000000000112233
Q ss_pred EEEEeccCCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeC
Q 004067 383 FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY 448 (776)
Q Consensus 383 ~~~~s~~~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~ 448 (776)
.+|.+..+| .++.+|+.+++... ......... ....++..||+.+ .+ .+|+.+++.
T Consensus 175 ~v~~~~~~g--~~~~~d~~tg~~~w-~~~~~~~~~--~~~~~~~~l~~~~-~~----~~l~~~d~~ 230 (238)
T PF13360_consen 175 RVYVSSGDG--RVVAVDLATGEKLW-SKPISGIYS--LPSVDGGTLYVTS-SD----GRLYALDLK 230 (238)
T ss_dssp EEEEECCTS--SEEEEETTTTEEEE-EECSS-ECE--CEECCCTEEEEEE-TT----TEEEEEETT
T ss_pred EEEEEcCCC--eEEEEECCCCCEEE-EecCCCccC--CceeeCCEEEEEe-CC----CEEEEEECC
Confidence 555565555 36666988887442 221111122 1356778788777 33 378888874
No 425
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.00 E-value=0.3 Score=47.20 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=49.4
Q ss_pred ceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCC
Q 004067 59 SIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSK 138 (776)
Q Consensus 59 ~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~d 138 (776)
.++.+.||+.||-+.+. .|-+......=...+.. .++.+|. ...-....||| |
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~k--------cqVpkD~----------~PQWRkl~WSp---D 54 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGK--------CQVPKDP----------NPQWRKLAWSP---D 54 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEE--------EecCCCC----------CchheEEEECC---C
Confidence 35679999999977652 24444443322111111 1122221 12345789999 9
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCC
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSS 166 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~ 166 (776)
+..||++ ..+.|.+.|+.|.+.- .+.+
T Consensus 55 ~tlLa~a~S~G~i~vfdl~g~~lf-~I~p 82 (282)
T PF15492_consen 55 CTLLAYAESTGTIRVFDLMGSELF-VIPP 82 (282)
T ss_pred CcEEEEEcCCCeEEEEecccceeE-EcCc
Confidence 9999998 5688999999987766 5443
No 426
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.98 E-value=0.0052 Score=60.40 Aligned_cols=151 Identities=10% Similarity=0.022 Sum_probs=92.5
Q ss_pred eeeEEEeecCCCceEEEE-e-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC---CcEEEEecCCCc
Q 004067 127 VTRYEWVKTSSKKKIIMV-P-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD---CELHVLNLLINE 201 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~-~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~---~~l~~~~l~~g~ 201 (776)
+....|+| --..|+- . .++.|+++|+.++.+...+.-.. +-..+.|+| ....|+.. .+||.+|...=.
T Consensus 190 i~svkfNp---vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnP--eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 190 ISSVKFNP---VETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNP--EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred eeEEecCC---CcchheeeeccCCceEEEecccCCccceeeeec--cccceecCc--cccceeeccccccceehhhhhhc
Confidence 44555566 3333333 2 67889999999887763333222 346689999 44556653 469998865322
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.-.-. +......+..+.|||-|+.++..+.|.
T Consensus 263 ~p~~v----------------~~dhvsAV~dVdfsptG~EfvsgsyDk-------------------------------- 294 (433)
T KOG0268|consen 263 RPLNV----------------HKDHVSAVMDVDFSPTGQEFVSGSYDK-------------------------------- 294 (433)
T ss_pred ccchh----------------hcccceeEEEeccCCCcchhccccccc--------------------------------
Confidence 11111 111112245678999999998877653
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
.|.++....+..+.+-- +..-..+..+.||-|.++|+..+ ++..|.+|-.+
T Consensus 295 ----sIRIf~~~~~~SRdiYh-------tkRMq~V~~Vk~S~Dskyi~SGS----dd~nvRlWka~ 345 (433)
T KOG0268|consen 295 ----SIRIFPVNHGHSRDIYH-------TKRMQHVFCVKYSMDSKYIISGS----DDGNVRLWKAK 345 (433)
T ss_pred ----eEEEeecCCCcchhhhh-------HhhhheeeEEEEeccccEEEecC----CCcceeeeecc
Confidence 36677776665544321 23334678899999999887766 44556677654
No 427
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.88 E-value=0.0023 Score=66.12 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=54.1
Q ss_pred CeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l~~g~ 201 (776)
.+..+.||| ||++||.. +|+-|.+.|.++.+.. -+-..--+......||||||+|+--..+| +-+|.+..+.
T Consensus 292 ~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 292 SINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cccceeEcC---CCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 678899999 99999965 8899999999987766 33222112367789999999999888776 4566665443
No 428
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.87 E-value=0.0047 Score=69.28 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=66.1
Q ss_pred CEEEEEEC--CcEEEEecCCCceeEE-eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEE-EEecCCCCCeEEE
Q 004067 182 TMIAFVRD--CELHVLNLLINEQRQL-THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAF-TQVDSSEIPRFRI 257 (776)
Q Consensus 182 ~~la~~~~--~~l~~~~l~~g~~~~l-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~-~~~~~~~~~~~~~ 257 (776)
.+|||+.+ ++|.++|.++...+.+ +..... +..+.|||||++|+| .+.+.-
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~------------------i~sP~~SPDG~~vAY~ts~e~~------- 373 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTIS------------------VYHPDISPDGKKVAFCTGIEGL------- 373 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCc------------------eecCcCCCCCCEEEEEEeecCC-------
Confidence 47999986 4899999999888877 554432 446789999999999 654320
Q ss_pred eecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeec
Q 004067 258 MHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRS 335 (776)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~ 335 (776)
..+..||+.++.+.....+.++ -....|......++|. .|+++++.+
T Consensus 374 ------------------------~g~s~vYv~~L~t~~~~~vkl~-------ve~aaiprwrv~e~gdt~ivyv~~a~ 421 (912)
T TIGR02171 374 ------------------------PGKSSVYVRNLNASGSGLVKLP-------VENAAIPRWRVLENGDTVIVYVSDAS 421 (912)
T ss_pred ------------------------CCCceEEEEehhccCCCceEee-------cccccccceEecCCCCeEEEEEcCCC
Confidence 0124588888876554433332 2244566667788886 777776554
No 429
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.86 E-value=0.085 Score=53.66 Aligned_cols=136 Identities=13% Similarity=0.062 Sum_probs=80.4
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCe-EEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..+.+||+++|+..... ..+...+..+.|.|..- +|+..+ -+..+.+.|... ..+.+..|.
T Consensus 266 ~TV~lWD~~~g~p~~s~--------~~~~k~Vq~l~wh~~~p~~LLsGs----~D~~V~l~D~R~------~~~s~~~wk 327 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSI--------THHGKKVQTLEWHPYEPSVLLSGS----YDGTVALKDCRD------PSNSGKEWK 327 (463)
T ss_pred ceEEEEEcCCCCcceeh--------hhcCCceeEEEecCCCceEEEecc----ccceEEeeeccC------ccccCceEE
Confidence 56899999999988763 34667788999999754 444433 455677777652 001111111
Q ss_pred ecccccccCCCCccccCCe--EEEEeccCCceEEEEEeCC--CceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCce
Q 004067 364 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDIN--GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 439 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~--g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~ 439 (776)
.. ..-..+.|+... .++.+..+| .||-+|.. ++...++-.++..+.++. ++..-..++.+++.+. .
T Consensus 328 ~~-----g~VEkv~w~~~se~~f~~~tddG--~v~~~D~R~~~~~vwt~~AHd~~ISgl~-~n~~~p~~l~t~s~d~--~ 397 (463)
T KOG0270|consen 328 FD-----GEVEKVAWDPHSENSFFVSTDDG--TVYYFDIRNPGKPVWTLKAHDDEISGLS-VNIQTPGLLSTASTDK--V 397 (463)
T ss_pred ec-----cceEEEEecCCCceeEEEecCCc--eEEeeecCCCCCceeEEEeccCCcceEE-ecCCCCcceeeccccc--e
Confidence 00 000011222221 455667788 88888854 334555666666666665 6655565666665554 3
Q ss_pred eeEEEEEeC
Q 004067 440 SHLYCAKLY 448 (776)
Q Consensus 440 ~~l~~~~~~ 448 (776)
+.||.++.+
T Consensus 398 Vklw~~~~~ 406 (463)
T KOG0270|consen 398 VKLWKFDVD 406 (463)
T ss_pred EEEEeecCC
Confidence 899999863
No 430
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.47 Score=50.42 Aligned_cols=243 Identities=11% Similarity=0.011 Sum_probs=132.4
Q ss_pred eeEEEeecCCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE--CCcEEEEecCCCcee
Q 004067 128 TRYEWVKTSSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCELHVLNLLINEQR 203 (776)
Q Consensus 128 ~~~~~sp~~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~l~~~~l~~g~~~ 203 (776)
......| +|..+++.. ...+...+....... ...............+++|+++.... .+.+.+++..+....
T Consensus 34 ~~v~~~~---~g~~~~v~~~~~~~~~~~~~~~n~~~-~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 34 GGVAVNP---DGTQVYVANSGSNDVSVIDATSNTVT-QSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred ceeEEcC---ccCEEEEEeecCceeeecccccceee-eeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 3456777 887777662 234555555422222 11111112345678899998765554 356888886655443
Q ss_pred EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCC
Q 004067 204 QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNV 283 (776)
Q Consensus 204 ~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 283 (776)
.-..-+.. ...++++||++.++...... .
T Consensus 110 ~~~~vG~~------------------P~~~~~~~~~~~vYV~n~~~---------------------------------~ 138 (381)
T COG3391 110 GSIPVGLG------------------PVGLAVDPDGKYVYVANAGN---------------------------------G 138 (381)
T ss_pred eEeeeccC------------------CceEEECCCCCEEEEEeccc---------------------------------C
Confidence 32221110 33788999999887655321 0
Q ss_pred eEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 284 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 284 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
...+.+.|..+++.... .+ .... -..++++|||+.++... .....|..+|.++..... ...... .
T Consensus 139 ~~~vsvid~~t~~~~~~-~~-------vG~~-P~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~v~~-~~~~~~-~- 203 (381)
T COG3391 139 NNTVSVIDAATNKVTAT-IP-------VGNT-PTGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNSVVR-GSVGSL-V- 203 (381)
T ss_pred CceEEEEeCCCCeEEEE-Ee-------cCCC-cceEEECCCCCeEEEEe---cCCCeEEEEeCCCcceec-cccccc-c-
Confidence 14578888888876655 32 1111 16789999999766654 245668889977655543 111100 0
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceeecc--ccCCeEEEEEEeecCCCcEEEEEEccCCCceee
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 441 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~~l--t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~ 441 (776)
.. .-.|..-.+..++..+|.....+....+...|...+..... ..+...... ...+|+|+.+|+..... ..
T Consensus 204 ~~--~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~-v~~~p~g~~~yv~~~~~----~~ 276 (381)
T COG3391 204 GV--GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRG-VAVDPAGKAAYVANSQG----GT 276 (381)
T ss_pred cc--CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCc-eeECCCCCEEEEEecCC----Ce
Confidence 00 00111111122333344444444345889999887765443 222211122 34899999988886653 24
Q ss_pred EEEEEe
Q 004067 442 LYCAKL 447 (776)
Q Consensus 442 l~~~~~ 447 (776)
++.++.
T Consensus 277 V~vid~ 282 (381)
T COG3391 277 VSVIDG 282 (381)
T ss_pred EEEEeC
Confidence 666664
No 431
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.84 E-value=0.66 Score=50.90 Aligned_cols=179 Identities=11% Similarity=0.001 Sum_probs=88.6
Q ss_pred EEEEEEEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCcee
Q 004067 285 VRLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 363 (776)
..+.++|.++.+. .++... .....+.++|||++++.++........+..++.+......++.-..
T Consensus 215 ~~vSvID~etmeV~~qV~Vd----------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---- 280 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVD----------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---- 280 (635)
T ss_pred EEEEEEECccceEEEEEEeC----------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----
Confidence 3456778877554 233221 2334578999999888775322222345555554433222221110
Q ss_pred ecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCC----c-e-eeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 364 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----T-C-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g----~-~-~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
. ..+.. ++++.++. ..++-++|... + + ...|.-+.. .-++ .+||||+++|....-...
T Consensus 281 -i--------ea~vk-dGK~~~V~----gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV-~vSPDGkylyVanklS~t 344 (635)
T PRK02888 281 -I--------EEAVK-AGKFKTIG----GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGV-NTSPDGKYFIANGKLSPT 344 (635)
T ss_pred -H--------HHhhh-CCCEEEEC----CCEEEEEECCccccCCcceEEEEECCCC-ccce-EECCCCCEEEEeCCCCCc
Confidence 0 00112 23333432 23788888665 2 2 333333321 1223 389999998888654433
Q ss_pred ceeeEEEEEeCC---CCC--CccccceeecCCCCeEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 438 LESHLYCAKLYP---DWN--HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 438 ~~~~l~~~~~~~---~g~--~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
+.++.+..-+ .++ ++.....++.-+.+.....|+++|+ +|+.--.+ ++|..|+...
T Consensus 345 --VSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~--aytslf~d--sqv~kwn~~~ 405 (635)
T PRK02888 345 --VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN--AYTTLFLD--SQIVKWNIEA 405 (635)
T ss_pred --EEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC--EEEeEeec--ceeEEEehHH
Confidence 5565554210 000 0000122233344555669999997 55544333 3788888654
No 432
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.83 E-value=0.94 Score=48.59 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=38.0
Q ss_pred ceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeE
Q 004067 139 KKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQ 204 (776)
Q Consensus 139 g~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~ 204 (776)
+.++++. .++.|+.+|.++|+..-.... .......|... +++.++...++.|+.+|+++|+..-
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV-AGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC-CCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEee
Confidence 3445544 678899999999987622221 11112334443 4433333334679999999998753
No 433
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.47 Score=44.57 Aligned_cols=122 Identities=14% Similarity=0.036 Sum_probs=76.7
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 309 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 309 (776)
++++..-|..+.|+++..| ..+|.||+++|+.+.. +
T Consensus 117 INam~ldP~enSi~~AgGD------------------------------------~~~y~~dlE~G~i~r~--------~ 152 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGD------------------------------------GVIYQVDLEDGRIQRE--------Y 152 (325)
T ss_pred cceeEeccCCCcEEEecCC------------------------------------eEEEEEEecCCEEEEE--------E
Confidence 5678888888888887632 6799999999998775 2
Q ss_pred CCCcceEEEEEe-ccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEE--E
Q 004067 310 NYDEEYLARVNW-MHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW--A 386 (776)
Q Consensus 310 ~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 386 (776)
.++..++..+.- +..++ |+.. ..++++.+||+++++...+.+.... .....|.. +..|-. .
T Consensus 153 rGHtDYvH~vv~R~~~~q-ilsG----~EDGtvRvWd~kt~k~v~~ie~yk~-----~~~lRp~~------g~wigala~ 216 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQ-ILSG----AEDGTVRVWDTKTQKHVSMIEPYKN-----PNLLRPDW------GKWIGALAV 216 (325)
T ss_pred cCCcceeeeeeecccCcc-eeec----CCCccEEEEeccccceeEEeccccC-----hhhcCccc------CceeEEEec
Confidence 567777777665 55565 4333 2677899999999987666543221 00011110 111211 1
Q ss_pred ecc----CCceEEEEEeCCCceeeccccC
Q 004067 387 SEK----TGFRHLYLHDINGTCLGPITEG 411 (776)
Q Consensus 387 s~~----~g~~~l~~~~~~g~~~~~lt~~ 411 (776)
++. +|...|-+|++...+.+++-.-
T Consensus 217 ~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 217 NEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred cCceEEecCCCceeEEeccCCCceEEEec
Confidence 111 4567889999887776665443
No 434
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.78 E-value=0.41 Score=52.52 Aligned_cols=117 Identities=9% Similarity=-0.058 Sum_probs=62.2
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEecc-CceeecccccccCCCCccccCCe--EEEE
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGG--FIWA 386 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 386 (776)
.-+.+.+..+.++|=+..++.+. .+..+.+|..... ...++.-.. ...+ ... +|++.+ ++++
T Consensus 395 ~~h~g~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~-~~Pl~~~~~~~~~v-~~v---------aWSptrpavF~~ 459 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVI-ASPLLSLDSSPDYV-TDV---------AWSPTRPAVFAT 459 (555)
T ss_pred cccCcceEeeecCCCccceeeee----ccceeEeccccCC-CCcchhhhhcccee-eee---------EEcCcCceEEEE
Confidence 34566788899999887665554 2445666665421 112211110 0000 001 233332 5566
Q ss_pred eccCCceEEEEEeCCCceeeccccC--CeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 387 SEKTGFRHLYLHDINGTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 387 s~~~g~~~l~~~~~~g~~~~~lt~~--~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
.+.+| +|.+||+.-.....+... ...+.....|++.|+.|... ...|. .++|.+.
T Consensus 460 ~d~~G--~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavG-d~~G~--~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDG--NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVG-DANGT--THILKLS 516 (555)
T ss_pred EcCCC--ceehhhhhccccCCcccccccccccceeecCCCCcEEEEe-cCCCc--EEEEEcC
Confidence 66678 899999765544444333 12334445588888865544 44433 6777774
No 435
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.78 E-value=0.016 Score=61.88 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=66.4
Q ss_pred CCeeeEEEeecCCCceEEEEe------CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc-EEEEec
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP------LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE-LHVLNL 197 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~------~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~-l~~~~l 197 (776)
..+.....|| +|+.||.. ...-|++|+...=.....|..+.-. +..++|||||++|+-+++.. .-++..
T Consensus 526 yEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT-VT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 526 YEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT-VTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred eeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhheecccceE-EEEEEECCCCcEEEEeecCceEEeeee
Confidence 3467888888 99999987 4455999998776555345554443 78899999999999998764 333333
Q ss_pred CCCce--eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEec
Q 004067 198 LINEQ--RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVD 248 (776)
Q Consensus 198 ~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 248 (776)
..+.. ..........+ ++-+..|+||++.++..+.|
T Consensus 602 ~~~~~~e~~fa~~k~HtR---------------IIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTR---------------IIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred ecccchhhhhccccccce---------------EEEEcccCcccceeEEecCC
Confidence 22111 01111111111 13456799999997766654
No 436
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.77 E-value=0.011 Score=64.08 Aligned_cols=143 Identities=14% Similarity=0.086 Sum_probs=80.3
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH------------HHHhCCcEEEEE
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ------------YLRSKGILVWKL 594 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~------------~l~~~G~~v~~~ 594 (776)
+.+....+..+.+|.+...+. ++..|+||++.||||++.+.-.+...-..... .+. +-..++.+
T Consensus 16 l~~~~~~~~~lfyw~~~s~~~---~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~-~~an~l~i 91 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRND---PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN-KFANLLFI 91 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SSG---GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG-GTSEEEEE
T ss_pred EecCCCCCcEEEEEEEEeCCC---CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccc-cccceEEE
Confidence 344433667899999976552 25679999999999987643222110000000 111 23788999
Q ss_pred CCC-CCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh----C------CCc
Q 004067 595 DNR-GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR----F------PDV 662 (776)
Q Consensus 595 d~r-g~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~----~------~~~ 662 (776)
|.| |.|.|-...... ...-.....+|+..++..+..+ +.....++.|+|-||||..+..+|.. . +-.
T Consensus 92 D~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp --STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred eecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 955 677653222211 0000112356677776655544 44455689999999999988777643 2 234
Q ss_pred eEEEEEcCCCCC
Q 004067 663 FQCAVSGAPVTS 674 (776)
Q Consensus 663 ~~~~v~~~~~~~ 674 (776)
++++++.+|+++
T Consensus 171 LkGi~IGng~~d 182 (415)
T PF00450_consen 171 LKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEESE-SB
T ss_pred cccceecCcccc
Confidence 789999999876
No 437
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.69 E-value=0.0078 Score=59.84 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=78.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhC---------CcEEEEECCCCCCCCc
Q 004067 533 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK---------GILVWKLDNRGTARRG 603 (776)
Q Consensus 533 dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~---------G~~v~~~d~rg~g~~~ 603 (776)
.|..++.....|+..... ++.-.|+++||.||+-. + +..++..|..- -|.|++|-.+|.|.|.
T Consensus 132 eGL~iHFlhvk~p~~k~~-k~v~PlLl~HGwPGsv~--E-----FykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd 203 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKK-KKVKPLLLLHGWPGSVR--E-----FYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSD 203 (469)
T ss_pred cceeEEEEEecCCccccC-CcccceEEecCCCchHH--H-----HHhhhhhhcCccccCCccceeEEEeccCCCCcccCc
Confidence 788899999998764222 33335677899998743 2 22234444432 3789999999999886
Q ss_pred hhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEE
Q 004067 604 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 668 (776)
Q Consensus 604 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~ 668 (776)
.+... .. ....+...++-|.-+ +.-++..|-|.-+|..++..+|..+|+.+.+.-+
T Consensus 204 ~~sk~----GF---n~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 204 APSKT----GF---NAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred CCccC----Cc---cHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 43221 11 133344444444322 2446999999999999999999999998765443
No 438
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.69 E-value=0.11 Score=49.98 Aligned_cols=165 Identities=9% Similarity=0.112 Sum_probs=103.0
Q ss_pred ccChHhhhcCC-CCCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceE-EeecCCCCCCCCCCCCHHHHHHH
Q 004067 40 LFSLEEIVQSP-LPGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQE-LVFSPPDGGLDENNISPEEKLRR 117 (776)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~ 117 (776)
..|+|.+-..+ ...| ++.-+-|-||+.+|+-... .+|-+|+++.+..+ +... ...+.+ .
T Consensus 109 ~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~d------n~i~l~~l~ess~~vaev~--------ss~s~e--~-- 169 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVG-KINCVEWEPNSDKLASMDD------NNIVLWSLDESSKIVAEVL--------SSESAE--M-- 169 (370)
T ss_pred cchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEecc------CceEEEEcccCcchheeec--------cccccc--c--
Confidence 34566655443 1222 4567789999999996653 46999999876642 1111 001111 0
Q ss_pred HHHHHhcCCeeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCc--EEEE
Q 004067 118 ERLRERGLGVTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCE--LHVL 195 (776)
Q Consensus 118 ~~~~~~~~~~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~--l~~~ 195 (776)
-....+-.||| -.||..++.+.++.++-||+.+-+....+....+..+..+.|.|+-+.++.+...+ |.+|
T Consensus 170 ------~~~ftsg~Wsp-HHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 170 ------RHSFTSGAWSP-HHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred ------cceecccccCC-CCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 12345567887 45899999999999999999875544344443444578899999999888877643 7788
Q ss_pred ecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 196 NLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 196 ~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
|...-+.- ++. ..+...|+. .++|.|--..|+...
T Consensus 243 D~R~tk~p-v~e-------l~~HsHWvW--------~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 243 DTRKTKFP-VQE-------LPGHSHWVW--------AVRFNPEHDQLILSG 277 (370)
T ss_pred eccCCCcc-ccc-------cCCCceEEE--------EEEecCccceEEEec
Confidence 76533221 111 223455643 667778776666544
No 439
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.67 E-value=0.19 Score=53.94 Aligned_cols=127 Identities=9% Similarity=0.042 Sum_probs=65.3
Q ss_pred eeeEEEeecCCCceEEEEeCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEE-EecCCCceeEE
Q 004067 127 VTRYEWVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHV-LNLLINEQRQL 205 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~-~~l~~g~~~~l 205 (776)
....+++| +|+.+++..++...++...+-..+ . .+ ....+.|+++++..+...++.|-+ .+.+....+.+
T Consensus 35 p~~ls~np---ngr~v~V~g~geY~iyt~~~~r~k-~--~G---~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 35 PQSLSHNP---NGRFVLVCGDGEYEIYTALAWRNK-A--FG---SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp -SEEEE-T---TSSEEEEEETTEEEEEETTTTEEE-E--EE---E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred CeeEEECC---CCCEEEEEcCCEEEEEEccCCccc-c--cC---ceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence 45778899 999999988888777763322222 1 11 245688998666544444555666 45544443344
Q ss_pred eeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeE
Q 004067 206 THGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKV 285 (776)
Q Consensus 206 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 285 (776)
...-. ...+ |. |.-|..... .
T Consensus 106 ~~~~~-------------------~~~I-f~--G~LL~~~~~-------------------------------------~ 126 (443)
T PF04053_consen 106 KLPFS-------------------VEKI-FG--GNLLGVKSS-------------------------------------D 126 (443)
T ss_dssp --SS--------------------EEEE-E---SSSEEEEET-------------------------------------T
T ss_pred cCCcc-------------------cceE-Ec--CcEEEEECC-------------------------------------C
Confidence 32210 1112 22 665554431 2
Q ss_pred EEEEEEcCCCceE-EEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 286 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 286 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.|.+||.++++.. .++. ..+..+.||+||+.+++.+
T Consensus 127 ~i~~yDw~~~~~i~~i~v-----------~~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDV-----------SAVKYVIWSDDGELVALVT 163 (443)
T ss_dssp EEEEE-TTT--EEEEESS------------E-EEEEE-TTSSEEEEE-
T ss_pred CEEEEEhhHcceeeEEec-----------CCCcEEEEECCCCEEEEEe
Confidence 3789999987654 4432 1367899999999888875
No 440
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.097 Score=49.42 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHh-CC--cEEEEECCCCCCCCchhhhhhh-hhccCCccHHHHHHH-H
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KG--ILVWKLDNRGTARRGLKFEASI-KHNCGRIDAEDQLTG-A 626 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G--~~v~~~d~rg~g~~~~~~~~~~-~~~~~~~~~~D~~~~-i 626 (776)
...+.++++.|.||....... ++..|.. .+ ..++.+-.-||-.-.....+.. ...-.....+|+++- +
T Consensus 27 ~~~~li~~IpGNPG~~gFY~~-------F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKl 99 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLLGFYTE-------FARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKL 99 (301)
T ss_pred CCceEEEEecCCCCchhHHHH-------HHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHH
Confidence 466899999999987653222 2333332 22 4577777666644331111111 011122335555443 5
Q ss_pred HHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC
Q 004067 627 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 659 (776)
Q Consensus 627 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 659 (776)
+++++.-. ...+|.++|||-|++|.+.+.-..
T Consensus 100 aFik~~~P-k~~ki~iiGHSiGaYm~Lqil~~~ 131 (301)
T KOG3975|consen 100 AFIKEYVP-KDRKIYIIGHSIGAYMVLQILPSI 131 (301)
T ss_pred HHHHHhCC-CCCEEEEEecchhHHHHHHHhhhc
Confidence 56655422 346899999999999999998743
No 441
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.33 Score=48.48 Aligned_cols=111 Identities=9% Similarity=0.064 Sum_probs=72.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCC------CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKT------CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~------~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
+..+.||.+|++|| .|.....+.+|+.+. .++.+|..++- ..+|..+
T Consensus 59 iNAlqFS~N~~~L~-----SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H----------------------~SNIF~L 111 (609)
T KOG4227|consen 59 INALQFSHNDRFLA-----SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH----------------------RSNIFSL 111 (609)
T ss_pred cceeeeccCCeEEe-----ecCCcceeeeechHHHHhhcCCCCceeccCcc----------------------ccceEEE
Confidence 57889999999998 333345677777653 23333433211 1468888
Q ss_pred EEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCC--CCccCceeCCCCCEEEEEECC-cEEEEecCC
Q 004067 131 EWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSC--SPVIDPHLSSDGTMIAFVRDC-ELHVLNLLI 199 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~--~~~~~~~~SpDg~~la~~~~~-~l~~~~l~~ 199 (776)
.|.- +.+.+|. ..+++.+-|+++.+.. -+..... +.+..+..+|-...++.+++. .+-+||...
T Consensus 112 ~F~~----~N~~~~SG~~~~~VI~HDiEt~qsi-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 112 EFDL----ENRFLYSGERWGTVIKHDIETKQSI-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred EEcc----CCeeEecCCCcceeEeeecccceee-eeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 8986 4555555 5678889999998877 4433222 236778889977777777654 466666553
No 442
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.61 E-value=0.51 Score=50.08 Aligned_cols=137 Identities=7% Similarity=-0.026 Sum_probs=89.4
Q ss_pred CCCcEEEEeCCCCccceecCCC-CCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccc
Q 004067 146 LPDGIYFQDLSCSKPELKLSSS-SCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYI 222 (776)
Q Consensus 146 ~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~ 222 (776)
..+.|+++++.+|+.+..++.+ ..+.+....|+.+- ..+|.... .+-.++..++....+......
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----------- 145 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKP----------- 145 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCC-----------
Confidence 5678999999999988666533 23334444555443 44555543 577778888877766554322
Q ss_pred eecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEc
Q 004067 223 AQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDL 302 (776)
Q Consensus 223 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~ 302 (776)
.+..+..+|||+.++..+ .+|.+||+++++...-
T Consensus 146 ------~~~sl~is~D~~~l~~as--------------------------------------~~ik~~~~~~kevv~~-- 179 (541)
T KOG4547|consen 146 ------LVSSLCISPDGKILLTAS--------------------------------------RQIKVLDIETKEVVIT-- 179 (541)
T ss_pred ------ccceEEEcCCCCEEEecc--------------------------------------ceEEEEEccCceEEEE--
Confidence 145778999999888765 5799999999987654
Q ss_pred ccCCCCCCCCcceEEEEEeccC-----CeEEEEEEeecCceEEEEEEECC
Q 004067 303 QCGGTDQNYDEEYLARVNWMHG-----NILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~SpD-----g~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
++++...+..++|.-+ |++++.... ......++..+-+
T Consensus 180 ------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 180 ------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-AERGITVWVVEKE 222 (541)
T ss_pred ------ecCCCcceEEEEEEEeccccccceeeeccc-cccceeEEEEEcc
Confidence 2577788888888877 554443322 2233455666653
No 443
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.61 E-value=0.0044 Score=60.54 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHH-HHHHHHcC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 633 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~ 633 (776)
|+|+++|+..|... .|..++..+... ..|+..+.+|.+.....+. +.+++.+. ++.+++..
T Consensus 1 ~pLF~fhp~~G~~~-------~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~~----------~l~~~a~~yv~~Ir~~Q 62 (257)
T COG3319 1 PPLFCFHPAGGSVL-------AYAPLAAALGPL-LPVYGLQAPGYGAGEQPFA----------SLDDMAAAYVAAIRRVQ 62 (257)
T ss_pred CCEEEEcCCCCcHH-------HHHHHHHHhccC-ceeeccccCcccccccccC----------CHHHHHHHHHHHHHHhC
Confidence 57889999766532 344445566555 8999999998875332221 13333332 33333322
Q ss_pred CCCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCCCCC
Q 004067 634 LAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 634 ~id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~~~~ 674 (776)
....+.+.|||+||.+|.-+|.+ ..+-+.-++++.+...
T Consensus 63 --P~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 63 --PEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred --CCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 34689999999999999999875 2334555566555444
No 444
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.60 E-value=0.032 Score=53.27 Aligned_cols=185 Identities=16% Similarity=0.074 Sum_probs=94.3
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCcc
Q 004067 539 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 618 (776)
Q Consensus 539 ~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~ 618 (776)
.|+..|+. +..+|-|+-| .-...... -.++.+.+.|+++||.|++.=|.-. -++.... . ..
T Consensus 8 ~wvl~P~~------P~gvihFiGG-af~ga~P~---itYr~lLe~La~~Gy~ViAtPy~~t----fDH~~~A-~----~~ 68 (250)
T PF07082_consen 8 SWVLIPPR------PKGVIHFIGG-AFVGAAPQ---ITYRYLLERLADRGYAVIATPYVVT----FDHQAIA-R----EV 68 (250)
T ss_pred cEEEeCCC------CCEEEEEcCc-ceeccCcH---HHHHHHHHHHHhCCcEEEEEecCCC----CcHHHHH-H----HH
Confidence 46677754 3445555544 32221111 1345567889999999999887521 1111111 1 11
Q ss_pred HHHHHHHHHHHHHcCCCCCC--cEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCcc---------ccccccccccc
Q 004067 619 AEDQLTGAEWLIKQGLAKVG--HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---------GYDTFYTEKYM 687 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~--~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~ 687 (776)
...+..+++.+.+....+.. .++=+|||+|+-+-+.+.+..+..-++-++.+ +.+.. .+.......+.
T Consensus 69 ~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~ 147 (250)
T PF07082_consen 69 WERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFT 147 (250)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccccccCcc
Confidence 33455666677665433332 57789999999999998876543223323321 11110 00000111111
Q ss_pred CCCCCCccchhcCChhhhhccCCCcEEEEecCCCCccChHHHHHHHHHHHHCCC-CeEEEEecCCCCC
Q 004067 688 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK-PYEILIFPDERHM 754 (776)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~-~~~~~~~~~~~H~ 754 (776)
..|.+.. ..+..-..+ ...|+|.-.+|.+ .++..+.+.|+.+.. ..+....+| +|-
T Consensus 148 PsP~ET~------~li~~~Y~~-~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 148 PSPEETR------RLIRESYQV-RRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred CCHHHHH------HHHHHhcCC-ccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 1121111 111111122 3457777777765 467778888876543 355666764 785
No 445
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.017 Score=57.90 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=69.6
Q ss_pred CceEEEEEcCCCCcccccccccccchhhhHHHHhCC--cEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 630 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~ 630 (776)
..-+++|+||... .|.......++.....| ..++.+-.+..|.- -.+.- .+.-..+...++...+.+|.
T Consensus 115 ~k~vlvFvHGfNn------tf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l-~~Yn~--DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 115 AKTVLVFVHGFNN------TFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSL-LGYNY--DRESTNYSRPALERLLRYLA 185 (377)
T ss_pred CCeEEEEEcccCC------chhHHHHHHHHHHhhcCCCcceEEEEcCCCCee-eeccc--chhhhhhhHHHHHHHHHHHH
Confidence 4479999999532 33333344456555555 45666666644321 00000 00001223667888899998
Q ss_pred HcCCCCCCcEEEEeechHHHHHHHHHhh--------CCCceEEEEEcCCCCCcc
Q 004067 631 KQGLAKVGHIGLYGWSYGGYLSAITLAR--------FPDVFQCAVSGAPVTSWD 676 (776)
Q Consensus 631 ~~~~id~~~i~l~G~S~GG~~a~~~a~~--------~~~~~~~~v~~~~~~~~~ 676 (776)
+... ..+|.|++||||..+++.++-+ .+..|+-+|+.+|-.|..
T Consensus 186 ~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D 237 (377)
T COG4782 186 TDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD 237 (377)
T ss_pred hCCC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence 8753 4699999999999999987643 123467788888876643
No 446
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=96.55 E-value=1.4 Score=47.01 Aligned_cols=201 Identities=19% Similarity=0.156 Sum_probs=117.9
Q ss_pred CceeE-cCCCCEEEEE-eCCCCcCcceEEEEecCC--CceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEe
Q 004067 58 TSIGF-SPDDNLITYL-LSPDHSLSRKVFSFDPKT--CKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWV 133 (776)
Q Consensus 58 ~~~~~-SpDG~~ia~~-~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s 133 (776)
....+ ++|+..++.. +..+ ..+.+|+..+ .....+..+. ..+....|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~~ 164 (466)
T COG2319 113 SKLALSSPDGNSILLASSSLD----GTVKLWDLSTPGKLIRTLEGHS------------------------ESVTSLAFS 164 (466)
T ss_pred eeEEEECCCcceEEeccCCCC----ccEEEEEecCCCeEEEEEecCc------------------------ccEEEEEEC
Confidence 44455 8888833322 2222 4699999886 3334444332 356789999
Q ss_pred ecCCCceEEEEeC--CCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEE--ECCcEEEEecCCCceeEEeeCC
Q 004067 134 KTSSKKKIIMVPL--PDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFV--RDCELHVLNLLINEQRQLTHGA 209 (776)
Q Consensus 134 p~~~dg~~l~~~~--~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~--~~~~l~~~~l~~g~~~~lt~~~ 209 (776)
| +++.++... ++.+.+|++..+... .........+....|+|+++.++.. .++.+.+|+...+.........
T Consensus 165 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~ 240 (466)
T COG2319 165 P---DGKLLASGSSLDGTIKLWDLRTGKPL-STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240 (466)
T ss_pred C---CCCEEEecCCCCCceEEEEcCCCceE-EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence 9 999777764 788999999986655 3333333357889999999844333 2345777776655544321111
Q ss_pred CCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEE
Q 004067 210 NGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 289 (776)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 289 (776)
... ..-..|+|+++.++....+ ..+.+
T Consensus 241 ~~~-----------------~~~~~~~~~~~~~~~~~~d------------------------------------~~~~~ 267 (466)
T COG2319 241 HSD-----------------SVVSSFSPDGSLLASGSSD------------------------------------GTIRL 267 (466)
T ss_pred CCc-----------------ceeEeECCCCCEEEEecCC------------------------------------CcEEE
Confidence 110 0011599999655522211 34677
Q ss_pred EEcCCCce-EEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEE
Q 004067 290 VSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 355 (776)
Q Consensus 290 ~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~ 355 (776)
|+...... .... ..+...+..+.|+|++..++... .. . .+..||..++......
T Consensus 268 ~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~-~d-~--~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 268 WDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGKLLASGS-SD-G--TVRLWDLETGKLLSSL 322 (466)
T ss_pred eeecCCCcEEEEE--------ecCCccEEEEEECCCCCEEEEee-CC-C--cEEEEEcCCCceEEEe
Confidence 77765553 1111 12345677789999888666633 22 2 2666788777654433
No 447
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.55 E-value=0.0084 Score=39.56 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=23.7
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeec-CceEEEEE
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRS-QTKLKVLK 343 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~l~~ 343 (776)
.........+.|||||+.|+|++++. .+..+||+
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 34555778899999999999998876 34455663
No 448
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.53 E-value=0.36 Score=46.88 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=95.3
Q ss_pred CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEec
Q 004067 309 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE 388 (776)
Q Consensus 309 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 388 (776)
+.++...+....|-.-|+.++..+. +..--+||.++|++..+....+. +..... .....+++.++.
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSW----DRTAnlwDVEtge~v~~LtGHd~---ELtHcs-------tHptQrLVvTsS 333 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASW----DRTANLWDVETGEVVNILTGHDS---ELTHCS-------THPTQRLVVTSS 333 (481)
T ss_pred eeccccceEehhhhcCcceeeeeec----cccceeeeeccCceeccccCcch---hccccc-------cCCcceEEEEec
Confidence 3567777778889999998877663 34456899999997655433222 111111 111344777777
Q ss_pred cCCceEEEEEeCCC--ceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC
Q 004067 389 KTGFRHLYLHDING--TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 466 (776)
Q Consensus 389 ~~g~~~l~~~~~~g--~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~ 466 (776)
++- ...+||... .....+..+...|.+.. |..|.+ +++++.+. .+++|.+.- -- .++..+-....
T Consensus 334 rDt--TFRLWDFReaI~sV~VFQGHtdtVTS~v-F~~dd~--vVSgSDDr--TvKvWdLrN--MR----splATIRtdS~ 400 (481)
T KOG0300|consen 334 RDT--TFRLWDFREAIQSVAVFQGHTDTVTSVV-FNTDDR--VVSGSDDR--TVKVWDLRN--MR----SPLATIRTDSP 400 (481)
T ss_pred cCc--eeEeccchhhcceeeeecccccceeEEE-EecCCc--eeecCCCc--eEEEeeecc--cc----CcceeeecCCc
Confidence 776 555666442 22344555556667665 777766 44544443 388888762 11 13444444444
Q ss_pred eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 467 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 467 ~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
++-+.+|..+..++.-..+ -++.++|+..
T Consensus 401 ~NRvavs~g~~iIAiPhDN----RqvRlfDlnG 429 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDN----RQVRLFDLNG 429 (481)
T ss_pred cceeEeecCCceEEeccCC----ceEEEEecCC
Confidence 5667888877777776554 3578888733
No 449
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.49 E-value=0.18 Score=54.10 Aligned_cols=128 Identities=10% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
|..++.+|+|+.|+-... +...++...+...+. . ....++.|++
T Consensus 35 p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k~-~---------------------------G~g~~~vw~~-- 78 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNKA-F---------------------------GSGLSFVWSS-- 78 (443)
T ss_dssp -SEEEE-TTSSEEEEEET------TEEEEEETTTTEEEE-E---------------------------EE-SEEEE-T--
T ss_pred CeeEEECCCCCEEEEEcC------CEEEEEEccCCcccc-c---------------------------CceeEEEEec--
Confidence 689999999999986322 223444432222211 1 1234688999
Q ss_pred CCceEEEEeCCCcEEE-EeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCcee-EEeeCCCCCce
Q 004067 137 SKKKIIMVPLPDGIYF-QDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQR-QLTHGANGNTV 214 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~-~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~-~lt~~~~~~~~ 214 (776)
++++.+...+..|.+ -+.+....+ .+...-. +.. -|. |..|+...++.|..+|.++++.. ++...+
T Consensus 79 -~n~yAv~~~~~~I~I~kn~~~~~~k-~i~~~~~--~~~-If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~----- 146 (443)
T PF04053_consen 79 -RNRYAVLESSSTIKIYKNFKNEVVK-SIKLPFS--VEK-IFG--GNLLGVKSSDFICFYDWETGKLIRRIDVSA----- 146 (443)
T ss_dssp -SSEEEEE-TTS-EEEEETTEE-TT------SS---EEE-EE---SSSEEEEETTEEEEE-TTT--EEEEESS-E-----
T ss_pred -CccEEEEECCCeEEEEEcCccccce-EEcCCcc--cce-EEc--CcEEEEECCCCEEEEEhhHcceeeEEecCC-----
Confidence 898777777777777 455444422 3322110 111 222 88777777777999999988653 443221
Q ss_pred ecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 215 THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+..+.||+||+.++..+.
T Consensus 147 ---------------vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 147 ---------------VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp ----------------EEEEE-TTSSEEEEE-S
T ss_pred ---------------CcEEEEECCCCEEEEEeC
Confidence 236789999999999864
No 450
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=1.4 Score=50.97 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=63.7
Q ss_pred eeEcCCCCEEEEEeCCCCc----CcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 60 IGFSPDDNLITYLLSPDHS----LSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 60 ~~~SpDG~~ia~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
...|||.+.+.+....... .....+++++.++.. ...... .+..+....|||
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~-~~~~~~----------------------~~~~~~~~~wsp- 157 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEK-LHPPEY----------------------EGSKIQYASWSP- 157 (755)
T ss_pred cccChhhhhheeccCcccccceeeEEEEEEEEcCCCCc-ccCccc----------------------CCCeeEEEEEcC-
Confidence 3678999999887663221 123566667666651 111000 012456789999
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCccceecCCCCC-----------------CCccCceeCCCCCEEEEEECC
Q 004067 136 SSKKKIIMVPLPDGIYFQDLSCSKPELKLSSSSC-----------------SPVIDPHLSSDGTMIAFVRDC 190 (776)
Q Consensus 136 ~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~~~~~-----------------~~~~~~~~SpDg~~la~~~~~ 190 (776)
.|+.++|....+||...-......+.+..+.. ......-|||||..++|...+
T Consensus 158 --~~~~l~yv~~~niy~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~ 227 (755)
T KOG2100|consen 158 --LGNDLAYVLHNNIYYQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFN 227 (755)
T ss_pred --CCCEEEEEEecccccccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEec
Confidence 99999999888888665554444311111111 013346799999999988754
No 451
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.46 E-value=0.16 Score=53.44 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=64.7
Q ss_pred ceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccc---cCCeEEEEeccC
Q 004067 314 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTK---YSGGFIWASEKT 390 (776)
Q Consensus 314 ~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~ 390 (776)
..++.+.|+.||-.++..+ ..+.+++||+.+..+-.+-.+.... | -..+.| ++...+++.+..
T Consensus 229 ~svTal~F~d~gL~~aVGt----s~G~v~iyDLRa~~pl~~kdh~~e~---------p-i~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGT----STGSVLIYDLRASKPLLVKDHGYEL---------P-IKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred CcceEEEecCCceeEEeec----cCCcEEEEEcccCCceeecccCCcc---------c-eeeecccccCCCceEEecchH
Confidence 3578899999997666655 4567999999988776665543220 0 000111 111233333332
Q ss_pred CceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEE
Q 004067 391 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 446 (776)
Q Consensus 391 g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~ 446 (776)
-|.+|+..+|++...-+....+..+. +-|++. ++|++....+ .+.|.++
T Consensus 295 ---~~kiWd~~~Gk~~asiEpt~~lND~C-~~p~sG-m~f~Ane~~~--m~~yyiP 343 (703)
T KOG2321|consen 295 ---ILKIWDECTGKPMASIEPTSDLNDFC-FVPGSG-MFFTANESSK--MHTYYIP 343 (703)
T ss_pred ---HhhhcccccCCceeeccccCCcCcee-eecCCc-eEEEecCCCc--ceeEEcc
Confidence 56778877776544433333344554 445555 6788777654 5666665
No 452
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=96.37 E-value=1.8 Score=46.20 Aligned_cols=236 Identities=16% Similarity=0.161 Sum_probs=132.6
Q ss_pred CCeeeEEEeecCCCceEEEEeC-CCcEEEEeCCCCc-cceecCCCCCCCccCcee-CCCCCEEEEE-E--CCcEEEEecC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPL-PDGIYFQDLSCSK-PELKLSSSSCSPVIDPHL-SSDGTMIAFV-R--DCELHVLNLL 198 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~-~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~-SpDg~~la~~-~--~~~l~~~~l~ 198 (776)
..+....+.+ ++..++... ++.+.+|+...+. ....+.......+....+ ++++..++.. . ++.+.+++..
T Consensus 66 ~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 66 DSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 3567788888 888888774 8889999998885 221443322213455556 8899833333 3 3468889988
Q ss_pred C-Cce-eEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCC
Q 004067 199 I-NEQ-RQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYP 276 (776)
Q Consensus 199 ~-g~~-~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (776)
+ ... ..+...... +..+.|+|+++.++....
T Consensus 143 ~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~~~~~~----------------------------- 175 (466)
T COG2319 143 TPGKLIRTLEGHSES------------------VTSLAFSPDGKLLASGSS----------------------------- 175 (466)
T ss_pred CCCeEEEEEecCccc------------------EEEEEECCCCCEEEecCC-----------------------------
Confidence 7 333 333222211 346889999995554321
Q ss_pred CCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE--E
Q 004067 277 FAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV--I 354 (776)
Q Consensus 277 ~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~--l 354 (776)
....+.+|+..+++..... ..+...+..+.|+|++..++.. ...+..|..||...+.... +
T Consensus 176 ------~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~---~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 176 ------LDGTIKLWDLRTGKPLSTL--------AGHTDPVSSLAFSPDGGLLIAS---GSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred ------CCCceEEEEcCCCceEEee--------ccCCCceEEEEEcCCcceEEEE---ecCCCcEEEEECCCCcEEeeec
Confidence 0134788888874443331 3356678899999999833333 1134445577877555443 2
Q ss_pred EEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCcee--eccccCCeEEEEEEeecCCCcEEEEEE
Q 004067 355 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL--GPITEGDWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~--~~lt~~~~~~~~~~~~s~dg~~i~~~~ 432 (776)
..+.... .. .|.+ ++ .++.....++ .+.+|+...... ..+..+...+... .|+|++..++. .
T Consensus 239 ~~~~~~~-~~---~~~~-------~~-~~~~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~ 302 (466)
T COG2319 239 SGHSDSV-VS---SFSP-------DG-SLLASGSSDG--TIRLWDLRSSSSLLRTLSGHSSSVLSV-AFSPDGKLLAS-G 302 (466)
T ss_pred CCCCcce-eE---eECC-------CC-CEEEEecCCC--cEEEeeecCCCcEEEEEecCCccEEEE-EECCCCCEEEE-e
Confidence 1111111 11 2333 12 3444555566 666666554332 2222233444444 48888887666 4
Q ss_pred ccCCCceeeEEEE
Q 004067 433 TLDGPLESHLYCA 445 (776)
Q Consensus 433 ~~~~~~~~~l~~~ 445 (776)
..++. ..+|..
T Consensus 303 ~~d~~--~~~~~~ 313 (466)
T COG2319 303 SSDGT--VRLWDL 313 (466)
T ss_pred eCCCc--EEEEEc
Confidence 44443 678833
No 453
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.34 E-value=0.0091 Score=57.46 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC----CCceEEEEEcCC
Q 004067 596 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAP 671 (776)
Q Consensus 596 ~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----~~~~~~~v~~~~ 671 (776)
+||.-.+..+|.+.....+. .....+..|++++.+...-...+|.+.|||.||.+|.++++.. .+++..++...+
T Consensus 43 FRGTd~t~~~W~ed~~~~~~-~~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQ-DETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred EECCCCchhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 34443333344443333222 1234456677777654211234699999999999999999873 346777776554
No 454
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.21 Score=48.14 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=114.4
Q ss_pred CceeEcCCCCE-EEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 58 TSIGFSPDDNL-ITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 58 ~~~~~SpDG~~-ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
..+.++|--.+ ++|.+. .| .--+++|+++.+. ..+.+.++ .+ -+.-=.|||
T Consensus 71 Hgi~~~p~~~ravafARr-PG---tf~~vfD~~~~~~pv~~~s~~~--------------------RH--fyGHGvfs~- 123 (366)
T COG3490 71 HGIAFHPALPRAVAFARR-PG---TFAMVFDPNGAQEPVTLVSQEG--------------------RH--FYGHGVFSP- 123 (366)
T ss_pred CCeecCCCCcceEEEEec-CC---ceEEEECCCCCcCcEEEecccC--------------------ce--eecccccCC-
Confidence 46677775544 444444 33 3578889988765 44443222 00 011226889
Q ss_pred CCCceEEEEeCC------CcEEEEeCCCCccce-ecCCCCCCCccCceeCCCCCEEEEEECC------------------
Q 004067 136 SSKKKIIMVPLP------DGIYFQDLSCSKPEL-KLSSSSCSPVIDPHLSSDGTMIAFVRDC------------------ 190 (776)
Q Consensus 136 ~~dg~~l~~~~~------~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~SpDg~~la~~~~~------------------ 190 (776)
||.+|+-+.+ +-|-++|...+-.+. .+.... -....+.|.+||+.|+....+
T Consensus 124 --dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 124 --DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred --CCcEEEeecCCCCCCCceEEEEecccccceecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 9999988744 347778877443331 111111 124668999999998876431
Q ss_pred -cEEEEecCCCcee-EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCC
Q 004067 191 -ELHVLNLLINEQR-QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE 268 (776)
Q Consensus 191 -~l~~~~l~~g~~~-~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (776)
.+-+++..+|+.. +.+.... ...++ ++.+...+||+ |.|...-++....+
T Consensus 201 PSlvlld~atG~liekh~Lp~~----l~~lS----------iRHld~g~dgt-vwfgcQy~G~~~d~------------- 252 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPAS----LRQLS----------IRHLDIGRDGT-VWFGCQYRGPRNDL------------- 252 (366)
T ss_pred ccEEEEeccccchhhhccCchh----hhhcc----------eeeeeeCCCCc-EEEEEEeeCCCccC-------------
Confidence 2666665666432 2221110 00011 44677788887 66655322211110
Q ss_pred CcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 269 AQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.-|.-.-..++..+.++.++.. ...-..|+..++-..+..+++.++.++ ...++||+++
T Consensus 253 ----------------ppLvg~~~~g~~l~~~~~pee~--~~~~anYigsiA~n~~~glV~lTSP~G---N~~vi~da~t 311 (366)
T COG3490 253 ----------------PPLVGHFRKGEPLEFLDLPEEQ--TAAFANYIGSIAANRRDGLVALTSPRG---NRAVIWDAAT 311 (366)
T ss_pred ----------------CcceeeccCCCcCcccCCCHHH--HHHHHhhhhheeecccCCeEEEecCCC---CeEEEEEcCC
Confidence 1111111223333333332100 012245677777776666777776554 3478999999
Q ss_pred CceEEE
Q 004067 349 GQRKVI 354 (776)
Q Consensus 349 g~~~~l 354 (776)
|.+...
T Consensus 312 G~vv~~ 317 (366)
T COG3490 312 GAVVSE 317 (366)
T ss_pred CcEEec
Confidence 997654
No 455
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.31 E-value=0.36 Score=53.22 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=85.4
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
.+.+++.|+||+.+|++.... ..+|+... ++..+.+.. +.....++|++
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~----~~l~~~~~-g~~~~~~~~-------------------------g~~Lt~PS~d~- 392 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR----TTLYTVSP-GQPARALTS-------------------------GSTLTRPSFSP- 392 (573)
T ss_pred cccceeecCCCceEEEecCCC----cEEEEecC-CCcceeeec-------------------------CCCccCCcccC-
Confidence 467899999999999985422 36877776 345554443 24567788998
Q ss_pred CCCceEEEEeCCC---cEEEEeCCCC-cc------ceecCCCCCCCccCceeCCCCCEEEEEE--CCc--EEEEec---C
Q 004067 136 SSKKKIIMVPLPD---GIYFQDLSCS-KP------ELKLSSSSCSPVIDPHLSSDGTMIAFVR--DCE--LHVLNL---L 198 (776)
Q Consensus 136 ~~dg~~l~~~~~~---~l~~~d~~~~-~~------~~~l~~~~~~~~~~~~~SpDg~~la~~~--~~~--l~~~~l---~ 198 (776)
+| ++....++ .|..+.-.+. +. ........+..+..++.|+||-++|++. ++. |++--+ .
T Consensus 393 --~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~ 469 (573)
T PRK13614 393 --QD-WVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNE 469 (573)
T ss_pred --CC-CEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCC
Confidence 88 67665443 3555443321 11 0012212222488899999999999998 443 776433 4
Q ss_pred CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 199 INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 199 ~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
+|..+.|+..-.- .. .....++.|..|+. |+..+
T Consensus 470 ~G~P~~L~~~~~~---~~----------~~~~~sl~W~~~~s-l~V~~ 503 (573)
T PRK13614 470 DGTPRELTAPITL---AA----------DSDADTGAWVGDST-VVVTK 503 (573)
T ss_pred CCCeEEccCceec---cc----------CCCcceeEEcCCCE-EEEEe
Confidence 5665666432110 00 01245788998887 54444
No 456
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.013 Score=62.85 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=78.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+.++.|+++...|+ .|.....|.+||++.++. +.|+.+. .++.++.|+|
T Consensus 73 IeSl~f~~~E~Lla-----agsasgtiK~wDleeAk~vrtLtgh~------------------------~~~~sv~f~P- 122 (825)
T KOG0267|consen 73 IESLTFDTSERLLA-----AGSASGTIKVWDLEEAKIVRTLTGHL------------------------LNITSVDFHP- 122 (825)
T ss_pred ceeeecCcchhhhc-----ccccCCceeeeehhhhhhhhhhhccc------------------------cCcceeeecc-
Confidence 47889999999998 344445799999997764 5566432 3677788999
Q ss_pred CCCceEEEE-eCCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC-CcEEEEecCCCce
Q 004067 136 SSKKKIIMV-PLPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD-CELHVLNLLINEQ 202 (776)
Q Consensus 136 ~~dg~~l~~-~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~-~~l~~~~l~~g~~ 202 (776)
=|.+.+- ..+.++.+||..-....-....+.. .+...+|+|||++++-..+ +.+-+||+.-|+.
T Consensus 123 --~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~ 188 (825)
T KOG0267|consen 123 --YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL 188 (825)
T ss_pred --ceEEeccccccccceehhhhccCceeeecCCcc-eeEEEeecCCCceeeccCCcceeeeeccccccc
Confidence 7777653 3678899999873322213332222 2667899999999988776 4477777765543
No 457
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=1.4 Score=43.16 Aligned_cols=104 Identities=10% Similarity=0.099 Sum_probs=64.0
Q ss_pred CeeeEEEeecCCCceEEEEeCC--CcEEEEeCCCCccc-eecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecCCCc
Q 004067 126 GVTRYEWVKTSSKKKIIMVPLP--DGIYFQDLSCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLLINE 201 (776)
Q Consensus 126 ~~~~~~~sp~~~dg~~l~~~~~--~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~~g~ 201 (776)
++.+..|+| |.+.|+...+ ..|.-++.+|.-.+ .+|+... ....+.|..+|+.++.-- ++.+|++.++.+.
T Consensus 87 nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 87 NVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 578899999 9999887744 45666677766555 1333322 355678888887655442 3567777776542
Q ss_pred ee------EEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 202 QR------QLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 202 ~~------~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
.. .++-+... ..-+| +++++|+|....+++.+.
T Consensus 162 ~~~~~~~~~i~L~~~~-k~N~G------------fEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 162 TVISAKVQKIPLGTTN-KKNKG------------FEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cEEeccceEEeccccC-CCCcC------------ceeeecCCCCceEEEEEc
Confidence 21 22221111 00122 568999999999988763
No 458
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.4 Score=51.66 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=47.9
Q ss_pred CceeEcCC-CCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCC--CCCHHHHHHHHHHHHhcCCeeeEEEee
Q 004067 58 TSIGFSPD-DNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDEN--NISPEEKLRRERLRERGLGVTRYEWVK 134 (776)
Q Consensus 58 ~~~~~SpD-G~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~sp 134 (776)
..|+++|. +..|||++.- .+|+.++.+++++++|.......+.. +++.. .......+.......|.|+|
T Consensus 203 ~dP~lcP~~~~fia~i~~~------dl~V~n~~~~~ekrlt~~h~g~sn~~dd~~saG--Vasyv~QEEfdR~~GyWW~p 274 (867)
T KOG2281|consen 203 MDPKLCPADPDFIAYIKVC------DLWVLNILTGEEKRLTYIHNGSSNSKDDAISAG--VASYVVQEEFDRFEGYWWSP 274 (867)
T ss_pred cCcccCCCCccceeeeehh------hhhhhhhhhchhhceeeeeccccccccchhhcC--cchHHHHHHHHhhcceeecC
Confidence 47788885 9999999874 49999999999999986544222211 22211 00011111223456789998
Q ss_pred cCCC-ceEEEEe
Q 004067 135 TSSK-KKIIMVP 145 (776)
Q Consensus 135 ~~~d-g~~l~~~ 145 (776)
+|.+ -.+|+|.
T Consensus 275 ~s~~~~~rIlYe 286 (867)
T KOG2281|consen 275 PSGLKILRILYE 286 (867)
T ss_pred CCCCceEEEEee
Confidence 6632 3445555
No 459
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.09 E-value=0.51 Score=46.28 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=51.3
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc-eEEEEcccCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP-VSWMDLQCGGTD 308 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~ 308 (776)
+.-.+|++|+..|+....+ .++++|...+.. -.....
T Consensus 13 itchAwn~drt~iAv~~~~------------------------------------~evhiy~~~~~~~w~~~ht------ 50 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNN------------------------------------HEVHIYSMLGADLWEPAHT------ 50 (361)
T ss_pred eeeeeecCCCceEEeccCC------------------------------------ceEEEEEecCCCCceecee------
Confidence 3457899999999875532 346777766665 222222
Q ss_pred CCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC-CCCceE
Q 004067 309 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI-KTGQRK 352 (776)
Q Consensus 309 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~-~~g~~~ 352 (776)
+..++..+..+.|+|.+..|+..+. +..-|+|.. .+|+.+
T Consensus 51 ls~Hd~~vtgvdWap~snrIvtcs~----drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 51 LSEHDKIVTGVDWAPKSNRIVTCSH----DRNAYVWTQPSGGTWK 91 (361)
T ss_pred hhhhCcceeEEeecCCCCceeEccC----CCCccccccCCCCeec
Confidence 2677888999999999987876652 233566776 666654
No 460
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.036 Score=56.10 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=89.7
Q ss_pred hhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhh
Q 004067 579 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 579 ~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
..+..|+++|+.|+.+|---+-++.+... ....|+.+.+++...+- ...++.++|+|+|+-+--.+-.+
T Consensus 278 ~v~~~l~~~gvpVvGvdsLRYfW~~rtPe---------~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~~n~ 346 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSLRYFWSERTPE---------QIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFAYNR 346 (456)
T ss_pred HHHHHHHHCCCceeeeehhhhhhccCCHH---------HHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHHHHh
Confidence 35788999999999999543323322211 12678888888887764 45699999999999877666655
Q ss_pred CCCceEEEE------EcCCCCCcccccccccccccCCCCCCccchhcCChhhhhccCC-CcEEEEecCCC--CccChHHH
Q 004067 659 FPDVFQCAV------SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMID--ENVHFRHT 729 (776)
Q Consensus 659 ~~~~~~~~v------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D--~~v~~~~~ 729 (776)
-|...+..| .+.-..++ .... +.|++...+. .......+.++. .-+.+|+|.+| ..||-
T Consensus 347 L~~~~r~~v~~~~ll~l~~~~~f---e~~v-~gWlg~~~~g-----~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~--- 414 (456)
T COG3946 347 LPPATRQRVRMVSLLGLGRTADF---EISV-EGWLGMAGEG-----AGDVVPDIAKLPLARVQCIYGQEEKDTACPS--- 414 (456)
T ss_pred CCHHHHHHHHHHHHHhccccceE---EEEE-eeeeccCCcC-----CCCcchhhhhCCcceeEEEecCccccccCCc---
Confidence 443222111 11111111 1111 1222222211 123344555665 46889999665 44432
Q ss_pred HHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHH
Q 004067 730 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 772 (776)
Q Consensus 730 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 772 (776)
++. +..+.+.+|| ||.| .++-+.+.+.+++=+
T Consensus 415 ------l~~--~~~~~v~lpG-gHHF--d~dy~~la~~il~~~ 446 (456)
T COG3946 415 ------LKA--KGVDTVKLPG-GHHF--DGDYEKLAKAILQGM 446 (456)
T ss_pred ------chh--hcceeEecCC-Cccc--CccHHHHHHHHHHHH
Confidence 221 3357778888 5545 345555566666544
No 461
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.04 E-value=0.02 Score=47.69 Aligned_cols=59 Identities=8% Similarity=0.133 Sum_probs=48.8
Q ss_pred CCcEEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHH
Q 004067 710 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 773 (776)
Q Consensus 710 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 773 (776)
..|+|++.++.|..+|...+..+.+.| ....++..++.||.... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l----~~s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARL----PGSRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHC----CCceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 489999999999999999999999987 33689999999998743 344566778888875
No 462
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.29 Score=52.93 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=47.0
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+..|.-||++|+-+-+++ .|.+-.++|... .. ++-+ +.-.....||+
T Consensus 118 V~SmsWn~dG~kIcIvYeDG-----avIVGsvdGNRI---wg------------KeLk---------g~~l~hv~ws~-- 166 (1189)
T KOG2041|consen 118 VVSMSWNLDGTKICIVYEDG-----AVIVGSVDGNRI---WG------------KELK---------GQLLAHVLWSE-- 166 (1189)
T ss_pred EEEEEEcCCCcEEEEEEccC-----CEEEEeecccee---cc------------hhcc---------hheccceeecc--
Confidence 46889999999999776643 366666655432 10 0000 01123467999
Q ss_pred CCceEEEEe-CCCcEEEEeCCCCccc
Q 004067 137 SKKKIIMVP-LPDGIYFQDLSCSKPE 161 (776)
Q Consensus 137 ~dg~~l~~~-~~~~l~~~d~~~~~~~ 161 (776)
|.+.++|. .++.+.++|-++.-.+
T Consensus 167 -D~~~~Lf~~ange~hlydnqgnF~~ 191 (1189)
T KOG2041|consen 167 -DLEQALFKKANGETHLYDNQGNFER 191 (1189)
T ss_pred -cHHHHHhhhcCCcEEEecccccHHH
Confidence 99999987 6778888888776444
No 463
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.91 E-value=0.44 Score=55.12 Aligned_cols=193 Identities=11% Similarity=0.080 Sum_probs=98.7
Q ss_pred EEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC--CCceEEEE-------E
Q 004067 286 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQRKVIL-------V 356 (776)
Q Consensus 286 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~--~g~~~~l~-------~ 356 (776)
.|.++|+++.....+ -.-+..+...+||||++++++.+.+ ..|+.++-+ -=..+.+. .
T Consensus 91 ~iilvd~et~~~eiv---------g~vd~GI~aaswS~Dee~l~liT~~----~tll~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 91 DIILVDPETLELEIV---------GNVDNGISAASWSPDEELLALITGR----QTLLFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred cEEEEcccccceeee---------eeccCceEEEeecCCCcEEEEEeCC----cEEEEEeccccchhccccccccccccc
Confidence 356667777766655 2345678889999999988888732 334443320 00111221 1
Q ss_pred eccCceeecccccccCC------------------------CCccccCCeEEEE-e---ccCCceEEEEEeCCCceeecc
Q 004067 357 EELDSWVNLHDCFTPLD------------------------KGVTKYSGGFIWA-S---EKTGFRHLYLHDINGTCLGPI 408 (776)
Q Consensus 357 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-s---~~~g~~~l~~~~~~g~~~~~l 408 (776)
....+|..-...|+... ..++|-+++-||+ + ...|...|.+|+.+| .....
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~ 236 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNST 236 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhcc
Confidence 11114433233333111 1156767763333 2 345668999999883 33333
Q ss_pred ccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCC
Q 004067 409 TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLD 487 (776)
Q Consensus 409 t~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~ 487 (776)
..........++|-|.|..|.......+...+.++.-+--..|.. ..+..-... +..+.|+.++..|+.+.+...
T Consensus 237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f----~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e 312 (1265)
T KOG1920|consen 237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF----VLPFPLDEKEVEELAWNSNSDILAVVTSNLE 312 (1265)
T ss_pred cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc----ccCCcccccchheeeecCCCCceeeeecccc
Confidence 222222334456888887766654433222234443331001111 111111122 667899999999998766543
Q ss_pred CCCEEEEEEc
Q 004067 488 SPPRILLCSL 497 (776)
Q Consensus 488 ~~~~i~~~~~ 497 (776)
. ..|++|-+
T Consensus 313 ~-~~v~lwt~ 321 (1265)
T KOG1920|consen 313 N-SLVQLWTT 321 (1265)
T ss_pred c-ceEEEEEe
Confidence 2 33555543
No 464
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.90 E-value=0.035 Score=56.26 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=65.3
Q ss_pred hhHHHHhCCcEEEEECCCCCCCCchhhhhhh---hhccC----CccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHH
Q 004067 580 RAQYLRSKGILVWKLDNRGTARRGLKFEASI---KHNCG----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 652 (776)
Q Consensus 580 ~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~---~~~~~----~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a 652 (776)
+.+...+.+-.+|.+..|=.|.+- +|.+.. ..+.+ .+..+|+...+.+|+.........|+++|.|+||+++
T Consensus 103 m~D~Ap~~~AllVFaEHRyYGeS~-PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLa 181 (492)
T KOG2183|consen 103 MWDLAPELKALLVFAEHRYYGESL-PFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLA 181 (492)
T ss_pred HHhhhHhhCceEEEeehhccccCC-CCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHH
Confidence 445556788899999999777652 222221 11122 2347788888888887755566789999999999999
Q ss_pred HHHHhhCCCceEEEEE-cCCC
Q 004067 653 AITLARFPDVFQCAVS-GAPV 672 (776)
Q Consensus 653 ~~~a~~~~~~~~~~v~-~~~~ 672 (776)
.+.=.++|.++.++++ .+|+
T Consensus 182 AWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 182 AWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred HHHHhcChhhhhhhhhccCce
Confidence 9999999998766654 4454
No 465
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.83 E-value=2.5 Score=46.09 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=55.9
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (776)
.+|...+..++.-|++. ++.++ +++.|.+|+++++.......+..-.|+.. ..-+++++.+..+
T Consensus 176 ~gHtD~VRgL~vl~~~~-flScs----NDg~Ir~w~~~ge~l~~~~ghtn~vYsis-----------~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDSH-FLSCS----NDGSIRLWDLDGEVLLEMHGHTNFVYSIS-----------MALSDGLIVSTGE 239 (745)
T ss_pred ccchhheeeeEEecCCC-eEeec----CCceEEEEeccCceeeeeeccceEEEEEE-----------ecCCCCeEEEecC
Confidence 67888899999999986 44444 56789999997666666665554444321 1225567777777
Q ss_pred CCceEEEEEeCCCceeeccccCCeEEEE
Q 004067 390 TGFRHLYLHDINGTCLGPITEGDWMVEQ 417 (776)
Q Consensus 390 ~g~~~l~~~~~~g~~~~~lt~~~~~~~~ 417 (776)
++ +|.+|+-+ .-.+.|+.....+..
T Consensus 240 Dr--tlriW~~~-e~~q~I~lPttsiWs 264 (745)
T KOG0301|consen 240 DR--TLRIWKKD-ECVQVITLPTTSIWS 264 (745)
T ss_pred Cc--eEEEeecC-ceEEEEecCccceEE
Confidence 77 67777654 333445544433333
No 466
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.80 E-value=0.3 Score=47.12 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=74.1
Q ss_pred eEEEEecCCCc----eEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecCCCceEEEEe--CCCcEEEEeC
Q 004067 82 KVFSFDPKTCK----QELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTSSKKKIIMVP--LPDGIYFQDL 155 (776)
Q Consensus 82 ~l~~~~~~~~~----~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~ 155 (776)
+--+||+++|. ..||..|++ .+.+.+|+. +|..++.+ .+|.+.+.|+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDK------------------------EV~DIaf~~---~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDK------------------------EVYDIAFLK---GSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCc------------------------ceeEEEecc---CccceEEEecCCCcEEEEEe
Confidence 45667877762 467777654 688999998 88877754 7888999998
Q ss_pred CCCccceec-CCCC-CCCccCceeCCC-CCEEEEEEC--CcEEEEecCCCce--eEEeeCCCCCceecCCcccceecccC
Q 004067 156 SCSKPELKL-SSSS-CSPVIDPHLSSD-GTMIAFVRD--CELHVLNLLINEQ--RQLTHGANGNTVTHGLAEYIAQEEMD 228 (776)
Q Consensus 156 ~~~~~~~~l-~~~~-~~~~~~~~~SpD-g~~la~~~~--~~l~~~~l~~g~~--~~lt~~~~~~~~~~~~~~~~~~~~~~ 228 (776)
..-+.-..+ .... .......+|++. -.++|-... +++.+.|+.--.. .+|-....
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a------------------ 288 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA------------------ 288 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc------------------
Confidence 765544122 2221 233555677763 334444333 3577777654322 22221111
Q ss_pred CcceEEECCCCCeEEEEEecC
Q 004067 229 RKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 229 ~~~~~~wspDg~~l~~~~~~~ 249 (776)
-+++++|.|.++.-+....|+
T Consensus 289 ~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred cccceEecCCCCceeeecCCc
Confidence 167899999987666655444
No 467
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=95.71 E-value=3.7 Score=45.25 Aligned_cols=95 Identities=8% Similarity=-0.023 Sum_probs=55.3
Q ss_pred eEEEEEeCC--CceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceee-cCCCCeEE
Q 004067 393 RHLYLHDIN--GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNGKGKHV 469 (776)
Q Consensus 393 ~~l~~~~~~--g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l-~~~~~~~~ 469 (776)
.++.+|.-. .....++...-..+... .|||..-.+++....++. ++||.+..+..+ +...+ .+..-..-
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~~v~~v-aWSptrpavF~~~d~~G~--l~iWDLl~~~~~-----Pv~s~~~~~~~l~~ 491 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPDYVTDV-AWSPTRPAVFATVDGDGN--LDIWDLLQDDEE-----PVLSQKVCSPALTR 491 (555)
T ss_pred ceeEeccccCCCCcchhhhhccceeeee-EEcCcCceEEEEEcCCCc--eehhhhhccccC-----Ccccccccccccce
Confidence 366666533 33223332222334444 499988878888776654 899999874322 22222 12222345
Q ss_pred EEEcCCcCEEEEEeeCCCCCCEEEEEEcCC
Q 004067 470 AVLDHNMRNFVDFHDSLDSPPRILLCSLQD 499 (776)
Q Consensus 470 ~~~spdg~~l~~~~~~~~~~~~i~~~~~~~ 499 (776)
+.++++|+.|+..-.. +.++++++..
T Consensus 492 ~~~s~~g~~lavGd~~----G~~~~~~l~~ 517 (555)
T KOG1587|consen 492 VRWSPNGKLLAVGDAN----GTTHILKLSE 517 (555)
T ss_pred eecCCCCcEEEEecCC----CcEEEEEcCc
Confidence 6889999988877554 4577777643
No 468
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=95.70 E-value=0.031 Score=54.01 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=17.9
Q ss_pred CCcEEEEeechHHHHHHHHHh
Q 004067 637 VGHIGLYGWSYGGYLSAITLA 657 (776)
Q Consensus 637 ~~~i~l~G~S~GG~~a~~~a~ 657 (776)
..+|.++||||||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999877765
No 469
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.22 Score=50.87 Aligned_cols=160 Identities=9% Similarity=0.083 Sum_probs=97.4
Q ss_pred eeeEEEeecCCCceEEEEe--CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEEC--CcEEEEecCC--C
Q 004067 127 VTRYEWVKTSSKKKIIMVP--LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRD--CELHVLNLLI--N 200 (776)
Q Consensus 127 ~~~~~~sp~~~dg~~l~~~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~--~~l~~~~l~~--g 200 (776)
+.++.|.- +-+.|+++ .+.+|.+||+++|++...++ ..+..+....|.|....++.... ..+-+.|... .
T Consensus 246 vl~Ls~n~---~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 246 VLALSWNR---NFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred HHHHHhcc---ccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 34567777 77777776 67889999999999994444 44446899999998877776654 4466666542 1
Q ss_pred ceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCC
Q 004067 201 EQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGA 280 (776)
Q Consensus 201 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 280 (776)
.-+.+...++ +..++|.|.....++.+.+.+.
T Consensus 322 s~~~wk~~g~-------------------VEkv~w~~~se~~f~~~tddG~----------------------------- 353 (463)
T KOG0270|consen 322 SGKEWKFDGE-------------------VEKVAWDPHSENSFFVSTDDGT----------------------------- 353 (463)
T ss_pred cCceEEeccc-------------------eEEEEecCCCceeEEEecCCce-----------------------------
Confidence 1111111111 4467788888777777654432
Q ss_pred CCCeEEEEEEEcCCC-c-eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE
Q 004067 281 SNVKVRLGVVSAAGG-P-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 356 (776)
Q Consensus 281 ~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 356 (776)
|+-+|+... + +..+ ..|...|..+++++--.-++.+ ...+..+.+|+...-..+.+..
T Consensus 354 ------v~~~D~R~~~~~vwt~---------~AHd~~ISgl~~n~~~p~~l~t---~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 354 ------VYYFDIRNPGKPVWTL---------KAHDDEISGLSVNIQTPGLLST---ASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred ------EEeeecCCCCCceeEE---------EeccCCcceEEecCCCCcceee---ccccceEEEEeecCCCCccccc
Confidence 444554322 2 2222 4566778888888866533333 2245567777776555544433
No 470
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.62 E-value=0.058 Score=57.73 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccc--cchhh-------hHHHH------hCCcEE
Q 004067 527 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMR-------AQYLR------SKGILV 591 (776)
Q Consensus 527 ~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~--~~~~~-------~~~l~------~~G~~v 591 (776)
+.+....+..+.+|++...+. +...|+||++-||||+......|.. .+... ...+. .+-..+
T Consensus 42 ~~v~~~~~~~lfy~f~es~~~---~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anl 118 (433)
T PLN03016 42 IGIGEDENVQFFYYFIKSENN---PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANI 118 (433)
T ss_pred EEecCCCCeEEEEEEEecCCC---cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcE
Confidence 333333456788888875442 2567999999999998763221110 00000 00111 123678
Q ss_pred EEECC-CCCCCCchhhhhhhhhccCC-ccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh----C-----
Q 004067 592 WKLDN-RGTARRGLKFEASIKHNCGR-IDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR----F----- 659 (776)
Q Consensus 592 ~~~d~-rg~g~~~~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~----~----- 659 (776)
+.+|. -|.|.|-..... ..... .+++|+..++....++ +......+.|+|.|+||..+-.+|.. .
T Consensus 119 lfiDqPvGtGfSy~~~~~---~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 119 IFLDQPVGSGFSYSKTPI---DKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred EEecCCCCCCccCCCCCC---CccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 88894 456654211110 00111 1235666666654443 43345689999999999987777653 1
Q ss_pred -CCceEEEEEcCCCCC
Q 004067 660 -PDVFQCAVSGAPVTS 674 (776)
Q Consensus 660 -~~~~~~~v~~~~~~~ 674 (776)
+--++++++..|+.+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 114688888888765
No 471
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=95.60 E-value=0.72 Score=49.48 Aligned_cols=304 Identities=11% Similarity=0.084 Sum_probs=138.3
Q ss_pred ceEEEEe--CCCcEEEEeCCCCccc---eecCC---CCCCCccCceeCCCCCEEEEEECC--cEEEEecCCCceeEE--e
Q 004067 139 KKIIMVP--LPDGIYFQDLSCSKPE---LKLSS---SSCSPVIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQL--T 206 (776)
Q Consensus 139 g~~l~~~--~~~~l~~~d~~~~~~~---~~l~~---~~~~~~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~l--t 206 (776)
.++|++. .++.|-+.|.....-+ ++|.. +.. -+....|-| |+..+....+ .+..||++++...-. -
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-AifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN-AIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccc-eeEeeccCC-CceeEEEccCCceeeeeeeccceeecceee
Confidence 3444433 5666777765443211 02221 122 267789999 7766665544 499999998876543 2
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 286 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 286 (776)
.+... -+....|.|+...++.....++....|.+...+.... +.. .
T Consensus 141 ~GH~~-----------------SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~--e~~---------------~ 186 (720)
T KOG0321|consen 141 LGHTG-----------------SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL--EEF---------------D 186 (720)
T ss_pred ccccc-----------------ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH--HHH---------------h
Confidence 22211 1446779998886666555555555555544331110 000 0
Q ss_pred EEEEEcCCCceEEEEccc-CCCCCCCCcceEEE---EEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccC--
Q 004067 287 LGVVSAAGGPVSWMDLQC-GGTDQNYDEEYLAR---VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-- 360 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~---~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-- 360 (776)
..+++.-.+..+...... ..+........+.. +.+..|...|+.... .+..|.+||+..... .+...-.
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~--~~r~ep~~~ 261 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYT--AYRQEPRGS 261 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeeccccc--ccccCCCcc
Confidence 111111111000000000 00000112222222 556667766765542 577899999965321 1111000
Q ss_pred -ceeecccccccCCCCccccC-CeEEEEeccCCceEEEEEeCCCceeecccc--C----CeEEEEEEeecCCCcEEEEEE
Q 004067 361 -SWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITE--G----DWMVEQIVGVNEASGQVYFTG 432 (776)
Q Consensus 361 -~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~g~~~~~lt~--~----~~~~~~~~~~s~dg~~i~~~~ 432 (776)
.+-..+..+ ...-.+.-|. |..+|++=.++ .||.|+..+-....+.. + .+.+.+ ..|+|+.+++-.+
T Consensus 262 ~~~~t~skrs-~G~~nL~lDssGt~L~AsCtD~--sIy~ynm~s~s~sP~~~~sg~~~~sf~vks--~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 262 DKYPTHSKRS-VGQVNLILDSSGTYLFASCTDN--SIYFYNMRSLSISPVAEFSGKLNSSFYVKS--ELSPDDCSLLSGS 336 (720)
T ss_pred cCccCcccce-eeeEEEEecCCCCeEEEEecCC--cEEEEeccccCcCchhhccCcccceeeeee--ecCCCCceEeccC
Confidence 000000000 0000011122 23455554455 89999976654443322 2 122233 3689998755544
Q ss_pred ccCCCceeeEEEEEeCCCCCCccccceeecCCCC-eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCC
Q 004067 433 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 500 (776)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~ 500 (776)
... ...+|.++- -. ..+..|..+.. +..+.|.|.-..=+.+++.+. .+.+|++.++
T Consensus 337 sd~---~ayiw~vs~--~e----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~---~~kiW~l~~~ 393 (720)
T KOG0321|consen 337 SDE---QAYIWVVSS--PE----APPALLLGHTREVTTVRWLPSATTPVATCSDDF---RVKIWRLSNG 393 (720)
T ss_pred CCc---ceeeeeecC--cc----CChhhhhCcceEEEEEeeccccCCCceeeccCc---ceEEEeccCc
Confidence 433 357777763 11 23444554442 455666654433344443333 2444454443
No 472
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=95.54 E-value=0.035 Score=69.98 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCcccccccccccchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHcCC
Q 004067 555 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 634 (776)
Q Consensus 555 p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 634 (776)
|.|+++||.++... .|..++..|. .++.|+.++.+|++..... ...++++.+.+........
T Consensus 1069 ~~l~~lh~~~g~~~-------~~~~l~~~l~-~~~~v~~~~~~g~~~~~~~----------~~~l~~la~~~~~~i~~~~ 1130 (1296)
T PRK10252 1069 PTLFCFHPASGFAW-------QFSVLSRYLD-PQWSIYGIQSPRPDGPMQT----------ATSLDEVCEAHLATLLEQQ 1130 (1296)
T ss_pred CCeEEecCCCCchH-------HHHHHHHhcC-CCCcEEEEECCCCCCCCCC----------CCCHHHHHHHHHHHHHhhC
Confidence 56889999776543 2334455553 4699999999988644210 1123334333322222211
Q ss_pred CCCCcEEEEeechHHHHHHHHHhh---CCCceEEEEEcCC
Q 004067 635 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 671 (776)
Q Consensus 635 id~~~i~l~G~S~GG~~a~~~a~~---~~~~~~~~v~~~~ 671 (776)
...++.++||||||.++..+|.+ +++.+..+++..+
T Consensus 1131 -~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1131 -PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred -CCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 22479999999999999999885 4677777776654
No 473
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.54 E-value=3.3 Score=45.17 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=86.1
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEecc
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 389 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (776)
.+|...+..+..-|+++ ++..+ .+..|++|.- +...+.+..|.+-. +++...++.-+.+...
T Consensus 137 ~gH~asVWAv~~l~e~~-~vTgs----aDKtIklWk~-~~~l~tf~gHtD~V------------RgL~vl~~~~flScsN 198 (745)
T KOG0301|consen 137 QGHTASVWAVASLPENT-YVTGS----ADKTIKLWKG-GTLLKTFSGHTDCV------------RGLAVLDDSHFLSCSN 198 (745)
T ss_pred CCcchheeeeeecCCCc-EEecc----CcceeeeccC-Cchhhhhccchhhe------------eeeEEecCCCeEeecC
Confidence 46777788888888884 33333 4667899874 22334444443320 1112223322334456
Q ss_pred CCceEEEEEeCCCceeeccccCCeEEEEEEeecCCCcEEEEEEccCCCceeeEEEEEeCCCCCCccccceeecCCC-CeE
Q 004067 390 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKH 468 (776)
Q Consensus 390 ~g~~~l~~~~~~g~~~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~l~~~~-~~~ 468 (776)
+| .|.+|+++|.-....-.+...+.++. ...++. ++++..+++. ..+|..+. -.+.|+-.. .++
T Consensus 199 Dg--~Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~-~Ivs~gEDrt--lriW~~~e---------~~q~I~lPttsiW 263 (745)
T KOG0301|consen 199 DG--SIRLWDLDGEVLLEMHGHTNFVYSIS-MALSDG-LIVSTGEDRT--LRIWKKDE---------CVQVITLPTTSIW 263 (745)
T ss_pred Cc--eEEEEeccCceeeeeeccceEEEEEE-ecCCCC-eEEEecCCce--EEEeecCc---------eEEEEecCccceE
Confidence 67 89999998887777776665555554 334444 5666666654 77887763 234444433 466
Q ss_pred EEEEcCCcCEEEEEeeCCCCCCEEEEEEc
Q 004067 469 VAVLDHNMRNFVDFHDSLDSPPRILLCSL 497 (776)
Q Consensus 469 ~~~~spdg~~l~~~~~~~~~~~~i~~~~~ 497 (776)
.+.+=++|. ++..+|. +-|+++..
T Consensus 264 sa~~L~NgD-Ivvg~SD----G~VrVfT~ 287 (745)
T KOG0301|consen 264 SAKVLLNGD-IVVGGSD----GRVRVFTV 287 (745)
T ss_pred EEEEeeCCC-EEEeccC----ceEEEEEe
Confidence 776666765 4444432 24666554
No 474
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.48 E-value=0.063 Score=56.13 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=78.4
Q ss_pred CceEEEEEcC-CCCcccccccccccc-hhhhHHHHhCCcEEEEECCCCCCCCchhh---hhhhhhccCCccHHHHHHHHH
Q 004067 553 PYKTLISVYG-GPCVQLVCDSWINTV-DMRAQYLRSKGILVWKLDNRGTARRGLKF---EASIKHNCGRIDAEDQLTGAE 627 (776)
Q Consensus 553 ~~p~vl~~HG-~~~~~~~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rg~g~~~~~~---~~~~~~~~~~~~~~D~~~~i~ 627 (776)
..|+-|++-| |+.+ ..|.... ..+..+.++.|-.|+...+|=.|.+...- ...+..--....+.|+..+|+
T Consensus 85 ~gPiFLmIGGEgp~~----~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPES----DKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CCceEEEEcCCCCCC----CCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 3478777766 2222 2342221 13356667889999999999887552110 111111111234778888888
Q ss_pred HHHHcC-CCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCC
Q 004067 628 WLIKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 673 (776)
Q Consensus 628 ~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~ 673 (776)
.+..+. .-+..+.+.+|.||-|.++.++=..+|+++.+.|+.++..
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 887764 3344599999999999999999999999998888776543
No 475
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.42 E-value=0.41 Score=53.36 Aligned_cols=140 Identities=13% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCce-----EEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeE
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQ-----ELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRY 130 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (776)
.+.+++.|+||+.+|++.... ..||+-.+.++.. +.+.. +.....+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~----~~l~vg~~~~~~~~~~~~~~~~~-------------------------~~~Lt~P 414 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG----DSVYVGSLTPGASIGVHSWGVTA-------------------------DGRLTSP 414 (599)
T ss_pred CccceEEcCCCceEEEEcCCC----cEEEEeccCCCCccccccceeec-------------------------cCcccCC
Confidence 567899999999999996532 4688877644432 22221 2346677
Q ss_pred EEeecCCCceEEEEeCC----Cc-EEEEeCCCCccceecCC--CCCCCccCceeCCCCCEEEEEEC----CcEEEEecC-
Q 004067 131 EWVKTSSKKKIIMVPLP----DG-IYFQDLSCSKPELKLSS--SSCSPVIDPHLSSDGTMIAFVRD----CELHVLNLL- 198 (776)
Q Consensus 131 ~~sp~~~dg~~l~~~~~----~~-l~~~d~~~~~~~~~l~~--~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l~- 198 (776)
+|.+ +| ++..... .. +.+..- +|+.. .+.. -.+..+..++.|+||-++|++.+ .+|++--+.
T Consensus 415 S~d~---~g-~vWtvd~~~~~~~vl~v~~~-~G~~~-~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R 488 (599)
T PRK13613 415 SWDG---RG-DLWVVDRDPADPRLLWLLQG-DGEPV-EVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVR 488 (599)
T ss_pred cCcC---CC-CEEEecCCCCCceEEEEEcC-CCcEE-EeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEe
Confidence 8888 77 5554421 22 334433 44443 2222 11225888999999999999986 566655443
Q ss_pred --CCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEE
Q 004067 199 --INEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAF 244 (776)
Q Consensus 199 --~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~ 244 (776)
+|. +.|+.--. ... ++..+.++.|..++. |+.
T Consensus 489 ~~~G~-~~l~~~~~---l~~---------~l~~v~~~~W~~~~s-L~V 522 (599)
T PRK13613 489 DAKAV-VSVEEFRS---LAP---------ELEDVTDMSWAGDSQ-LVV 522 (599)
T ss_pred CCCCc-EEeeccEE---ecc---------CCCccceeEEcCCCE-EEE
Confidence 444 44533110 001 111245788999887 444
No 476
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=0.58 Score=49.21 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=112.2
Q ss_pred cceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCC
Q 004067 230 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 309 (776)
Q Consensus 230 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 309 (776)
+..+.|+.||..|+..+.| ..+.|||.-..|....- .
T Consensus 53 VN~LeWn~dG~lL~SGSDD------------------------------------~r~ivWd~~~~KllhsI-~------ 89 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSDD------------------------------------TRLIVWDPFEYKLLHSI-S------ 89 (758)
T ss_pred ecceeecCCCCEEeecCCc------------------------------------ceEEeecchhcceeeee-e------
Confidence 5688999999998876643 56789998765543321 1
Q ss_pred CCCcceEEEEEeccCC-eEEEEEEeecCceEEEEEEECCCCceEEEE---EeccCceeecccccccCCCCccccCCeEEE
Q 004067 310 NYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKTGQRKVIL---VEELDSWVNLHDCFTPLDKGVTKYSGGFIW 385 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (776)
+++...|..+.|-|-. ..++.+. ..+..|+++|++..+..-.. ++....|........-... ...+-..+|
T Consensus 90 TgHtaNIFsvKFvP~tnnriv~sg---AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~--~p~~Phtfw 164 (758)
T KOG1310|consen 90 TGHTANIFSVKFVPYTNNRIVLSG---AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIAT--APNGPHTFW 164 (758)
T ss_pred cccccceeEEeeeccCCCeEEEec---cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheec--CCCCCceEE
Confidence 5677889999999953 2444332 25677999998752221111 1111123221110000000 011113666
Q ss_pred EeccCCceEEEEEeCCC--------ceeeccccCCeE--EEEEEeecCCCcEEEEEEccCCCceeeEEEEE-----eCCC
Q 004067 386 ASEKTGFRHLYLHDING--------TCLGPITEGDWM--VEQIVGVNEASGQVYFTGTLDGPLESHLYCAK-----LYPD 450 (776)
Q Consensus 386 ~s~~~g~~~l~~~~~~g--------~~~~~lt~~~~~--~~~~~~~s~dg~~i~~~~~~~~~~~~~l~~~~-----~~~~ 450 (776)
+..++| .|..+|+.. +-...++.-... ...-+..||...+.+..+..+ | ...||... +..+
T Consensus 165 sasEDG--tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd-p-farLYD~Rr~lks~~s~ 240 (758)
T KOG1310|consen 165 SASEDG--TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD-P-FARLYDRRRVLKSFRSD 240 (758)
T ss_pred EecCCc--ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC-c-hhhhhhhhhhccCCCCC
Confidence 777788 677777543 112222221111 111223677665444433332 2 24555511 1112
Q ss_pred CCCccccc-----e------eecCCCC--------eEEEEEcCCcCEEEEEeeCCCCCCEEEEEEcCCCceeEe
Q 004067 451 WNHTLEAP-----V------KLTNGKG--------KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 505 (776)
Q Consensus 451 g~~~~~~~-----~------~l~~~~~--------~~~~~~spdg~~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (776)
|.....++ . .|.+..+ ..-+.|+|+|+.|++..++ -.+|++++..++...+
T Consensus 241 ~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g----EhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 241 GTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG----EHVYLFDVNEDKSPTP 310 (758)
T ss_pred ccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC----eEEEEEeecCCCCcee
Confidence 22111111 0 0111112 2235999999999998766 3599999887765544
No 477
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=2.7 Score=41.30 Aligned_cols=118 Identities=13% Similarity=0.082 Sum_probs=68.6
Q ss_pred ccCceeCCCCCEEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecC
Q 004067 172 VIDPHLSSDGTMIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDS 249 (776)
Q Consensus 172 ~~~~~~SpDg~~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 249 (776)
++...|+||.+.|..+.+. .|..++.++.-.+.+...+-. + .+++.|.-+|+..+. ++
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------D---------pE~Ieyig~n~fvi~---dE 147 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------D---------PETIEYIGGNQFVIV---DE 147 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--------C---------hhHeEEecCCEEEEE---eh
Confidence 7889999999998777765 466777776666666544321 1 346677777764432 22
Q ss_pred CCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceE----EEEcccCCCCCCCCcceEEEEEeccCC
Q 004067 250 SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS----WMDLQCGGTDQNYDEEYLARVNWMHGN 325 (776)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~SpDg 325 (776)
.... .-++.+|.++.... .+++.. ..+.......++|+|..
T Consensus 148 R~~~-------------------------------l~~~~vd~~t~~~~~~~~~i~L~~----~~k~N~GfEGlA~d~~~ 192 (316)
T COG3204 148 RDRA-------------------------------LYLFTVDADTTVISAKVQKIPLGT----TNKKNKGFEGLAWDPVD 192 (316)
T ss_pred hcce-------------------------------EEEEEEcCCccEEeccceEEeccc----cCCCCcCceeeecCCCC
Confidence 2211 12233333332211 222211 12225567789999999
Q ss_pred eEEEEEEeecCceEEEEEEEC
Q 004067 326 ILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~d~ 346 (776)
+.++++..+ +...||.++.
T Consensus 193 ~~l~~aKEr--~P~~I~~~~~ 211 (316)
T COG3204 193 HRLFVAKER--NPIGIFEVTQ 211 (316)
T ss_pred ceEEEEEcc--CCcEEEEEec
Confidence 877777654 4566888873
No 478
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.25 E-value=0.1 Score=55.41 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=82.9
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhH----HHH------hCCcEEEEEC
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ----YLR------SKGILVWKLD 595 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~----~l~------~~G~~v~~~d 595 (776)
.+.+....++.+.+|++..... +...|+||++-||||+..+...+..--..... .|. .+--.++.+|
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~~---P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd 124 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESENN---PETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLD 124 (454)
T ss_pred eEECCCCCCceEEEEEEEccCC---CCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEe
Confidence 3555545788999999986543 24569999999999988654211110000000 011 1123466667
Q ss_pred CC-CCCCCchhhhhhhhhccCCccHHHHHHHH-HHHHHcCCCCCCcEEEEeechHHHHHHHHHhh----CC------Cce
Q 004067 596 NR-GTARRGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR----FP------DVF 663 (776)
Q Consensus 596 ~r-g~g~~~~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~~------~~~ 663 (776)
.| |.|.|=.. .......-...+..|...++ +|+.+.+.--...+.|.|-|++|..+-.+|.. +. --+
T Consensus 125 ~PvGvGFSYs~-~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNL 203 (454)
T KOG1282|consen 125 QPVGVGFSYSN-TSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINL 203 (454)
T ss_pred cCCcCCccccC-CCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccc
Confidence 65 33433110 00000111122356665554 46665555566789999999999888777753 11 136
Q ss_pred EEEEEcCCCCC
Q 004067 664 QCAVSGAPVTS 674 (776)
Q Consensus 664 ~~~v~~~~~~~ 674 (776)
++.++..|+++
T Consensus 204 kG~~IGNg~td 214 (454)
T KOG1282|consen 204 KGYAIGNGLTD 214 (454)
T ss_pred eEEEecCcccC
Confidence 89999998876
No 479
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=95.22 E-value=0.06 Score=55.86 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcccccccccccchhhhHHHHhCCcE---EEEECCCCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc
Q 004067 556 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 632 (776)
Q Consensus 556 ~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 632 (776)
.++++||...... .+..+...+...|+. ++.+++++....... ....+.+.+-++.+...
T Consensus 61 pivlVhG~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~ql~~~V~~~l~~ 123 (336)
T COG1075 61 PIVLVHGLGGGYG-------NFLPLDYRLAILGWLTNGVYAFELSGGDGTYSL----------AVRGEQLFAYVDEVLAK 123 (336)
T ss_pred eEEEEccCcCCcc-------hhhhhhhhhcchHHHhcccccccccccCCCccc----------cccHHHHHHHHHHHHhh
Confidence 5677899633221 233334556777777 777777644111100 01133344545555544
Q ss_pred CCCCCCcEEEEeechHHHHHHHHHhhCC--CceEEEEEcCCC
Q 004067 633 GLAKVGHIGLYGWSYGGYLSAITLARFP--DVFQCAVSGAPV 672 (776)
Q Consensus 633 ~~id~~~i~l~G~S~GG~~a~~~a~~~~--~~~~~~v~~~~~ 672 (776)
. ...++.++||||||..+.+++...+ ..++..+..++.
T Consensus 124 ~--ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 124 T--GAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred c--CCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 3 3478999999999999999998877 677877776554
No 480
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.73 Score=44.58 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=64.1
Q ss_pred CccCceeCCCCC-EEEEEECC--cEEEEecCCCceeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 171 PVIDPHLSSDGT-MIAFVRDC--ELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 171 ~~~~~~~SpDg~-~la~~~~~--~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
+...+.++|--+ .++|.+.. -.+++|+.+++..++.....+ +.+.|.. .|||||+.| |.+.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHG--------------vfs~dG~~L-YATE 132 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHG--------------VFSPDGRLL-YATE 132 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeeccc--------------ccCCCCcEE-Eeec
Confidence 466789999655 56666653 478889988876555443332 2233322 489999855 5664
Q ss_pred cCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeE
Q 004067 248 DSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL 327 (776)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~ 327 (776)
++.. ..+.-|-+||...+-.+.=.. ..+.-.--.+.|++||+.
T Consensus 133 ndfd------------------------------~~rGViGvYd~r~~fqrvgE~-------~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 133 NDFD------------------------------PNRGVIGVYDAREGFQRVGEF-------STHGIGPHEVTLMADGRT 175 (366)
T ss_pred CCCC------------------------------CCCceEEEEecccccceeccc-------ccCCcCcceeEEecCCcE
Confidence 3321 123557888877432222111 222223346899999998
Q ss_pred EEEEE
Q 004067 328 TAQVL 332 (776)
Q Consensus 328 l~~~~ 332 (776)
++...
T Consensus 176 lvvan 180 (366)
T COG3490 176 LVVAN 180 (366)
T ss_pred EEEeC
Confidence 77663
No 481
>PLN02209 serine carboxypeptidase
Probab=95.11 E-value=0.14 Score=54.81 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=80.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCccccccccccc--chhhh-------HHHH------hCCcE
Q 004067 526 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT--VDMRA-------QYLR------SKGIL 590 (776)
Q Consensus 526 ~~~~~~~dg~~l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~--~~~~~-------~~l~------~~G~~ 590 (776)
.+.+....+..+.+|++..... +...|+|+++-||||+......+... +.... ..+. .+-..
T Consensus 43 y~~v~~~~~~~lf~~f~es~~~---~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~an 119 (437)
T PLN02209 43 YIGIGEEENVQFFYYFIKSDKN---PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTAN 119 (437)
T ss_pred EEEecCCCCeEEEEEEEecCCC---CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCc
Confidence 3444433466788888875542 24679999999999987643222110 00000 0111 12357
Q ss_pred EEEECC-CCCCCCchhhhhhhhhccCCccHHHHHHHHHHHHHc-CCCCCCcEEEEeechHHHHHHHHHhh----C-----
Q 004067 591 VWKLDN-RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR----F----- 659 (776)
Q Consensus 591 v~~~d~-rg~g~~~~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~----~----- 659 (776)
++.+|. -|.|.|-...... ......+.+|+..++....++ +.....++.|+|.|+||..+-.+|.. +
T Consensus 120 llfiDqPvGtGfSy~~~~~~--~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 120 IIFLDQPVGSGFSYSKTPIE--RTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred EEEecCCCCCCccCCCCCCC--ccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 888884 4555542111100 000112345666666655443 33344689999999999977777643 1
Q ss_pred -CCceEEEEEcCCCCC
Q 004067 660 -PDVFQCAVSGAPVTS 674 (776)
Q Consensus 660 -~~~~~~~v~~~~~~~ 674 (776)
+--++++++..|+++
T Consensus 198 ~~inl~Gi~igng~td 213 (437)
T PLN02209 198 PPINLQGYVLGNPITH 213 (437)
T ss_pred CceeeeeEEecCcccC
Confidence 113678888888776
No 482
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.052 Score=51.40 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=39.6
Q ss_pred EEEEecCCCCccChHHHHHHHHHHHHCCCCeEEEEecCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004067 713 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 774 (776)
Q Consensus 713 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 774 (776)
+.++.+.+|..+|......+-+.. ..+++...+ +||.-.+.-....+-.+|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~W----Pg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIW----PGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhC----CCCEEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 467778899999886665555543 556776676 699766666666777777777664
No 483
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.98 E-value=7.6 Score=43.22 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=40.0
Q ss_pred EEEEEEECCCCceEEEEEeccCceeecccccccCCCCccccCCeEEEEeccCCceEEEEEeCCCceee-ccccCCeEEEE
Q 004067 339 LKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQ 417 (776)
Q Consensus 339 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~g~~~~-~lt~~~~~~~~ 417 (776)
..|..+|+.+|+..--.....+. ..+.....+.++|..+.+| .|+.+|.++|+.. +...+.....+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~-----------~~~~l~t~g~lvf~g~~~G--~l~a~D~~TGe~lw~~~~g~~~~a~ 507 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPL-----------WGGVLATAGDLVFYGTLEG--YFKAFDAKTGEELWKFKTGSGIVGP 507 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCC-----------CCcceEECCcEEEEECCCC--eEEEEECCCCCEeEEEeCCCCceec
Confidence 46888888888765433322111 0111112445777777777 8999998887632 22112212223
Q ss_pred EEeecCCCcE
Q 004067 418 IVGVNEASGQ 427 (776)
Q Consensus 418 ~~~~s~dg~~ 427 (776)
+..+..+||+
T Consensus 508 P~ty~~~G~q 517 (527)
T TIGR03075 508 PVTYEQDGKQ 517 (527)
T ss_pred CEEEEeCCEE
Confidence 4444566664
No 484
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.97 E-value=6.3 Score=42.24 Aligned_cols=141 Identities=12% Similarity=0.005 Sum_probs=72.4
Q ss_pred EEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEEEEE-eccCcee
Q 004067 285 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWV 363 (776)
Q Consensus 285 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~ 363 (776)
.++-.|+...++...+.- ........+..||||++++..+ ..|.+||+++++.-.-++ +.++.-.
T Consensus 124 ~~v~~~~~~~~~~~~~~~--------~~~~~~~sl~is~D~~~l~~as------~~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 124 LKVVYILEKEKVIIRIWK--------EQKPLVSSLCISPDGKILLTAS------RQIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred eeEEEEecccceeeeeec--------cCCCccceEEEcCCCCEEEecc------ceEEEEEccCceEEEEecCCCcceEE
Confidence 456777777777766632 2334567789999999877653 459999999988654443 3333110
Q ss_pred ecccccccCCCCccccCC-eEEEEeccCC--ceEEEEEeCCCce---eeccccCCeEEEEEEeecCCCcEEEEEEccCCC
Q 004067 364 NLHDCFTPLDKGVTKYSG-GFIWASEKTG--FRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 437 (776)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~g--~~~l~~~~~~g~~---~~~lt~~~~~~~~~~~~s~dg~~i~~~~~~~~~ 437 (776)
- .|.-. .++. +-+|.+.... ...+|+.+.+.++ ...++-.+..+..-.+...|+...+..+....+
T Consensus 190 ~---~f~~~-----~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~ 261 (541)
T KOG4547|consen 190 L---SFTTL-----IDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIP 261 (541)
T ss_pred E---EEEEe-----ccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccC
Confidence 0 01110 1111 2344443333 2355555543332 233444444444333345566544444443333
Q ss_pred ceeeEEEEEe
Q 004067 438 LESHLYCAKL 447 (776)
Q Consensus 438 ~~~~l~~~~~ 447 (776)
...+++.-++
T Consensus 262 g~v~~~~~nl 271 (541)
T KOG4547|consen 262 GIVHLKLSNL 271 (541)
T ss_pred ceeeeccccH
Confidence 3455554444
No 485
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.96 E-value=4.2 Score=40.16 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=96.0
Q ss_pred CcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEECCcEEEEecCCCceeEEeeCCCCCceecCCcccceeccc
Q 004067 148 DGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVRDCELHVLNLLINEQRQLTHGANGNTVTHGLAEYIAQEEM 227 (776)
Q Consensus 148 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~~~~l~~~~l~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~ 227 (776)
+++.+||=.-......++... .+..+.+++| +|+.+..+.||++.-.+.-.+.-..+..
T Consensus 75 NkviIWDD~k~~~i~el~f~~--~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----------------- 133 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNS--EIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----------------- 133 (346)
T ss_pred ceEEEEecccCcEEEEEEecc--ceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc-----------------
Confidence 568888833333322444332 3777888777 8999999999999876543322211111
Q ss_pred CCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCce---EEEEccc
Q 004067 228 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV---SWMDLQC 304 (776)
Q Consensus 228 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~---~~l~~~~ 304 (776)
-.|.| |.......+ .. -+.|| |- ...+|.+.|+...+. ..+
T Consensus 134 -------~NPkG--lC~~~~~~~---k~----------------~LafP--g~--k~GqvQi~dL~~~~~~~p~~I---- 177 (346)
T KOG2111|consen 134 -------SNPKG--LCSLCPTSN---KS----------------LLAFP--GF--KTGQVQIVDLASTKPNAPSII---- 177 (346)
T ss_pred -------cCCCc--eEeecCCCC---ce----------------EEEcC--CC--ccceEEEEEhhhcCcCCceEE----
Confidence 12444 221110000 00 00111 11 114577778776655 444
Q ss_pred CCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCCCceEE-EEEeccC--ceeecccccccCCCCccccCC
Q 004067 305 GGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV-ILVEELD--SWVNLHDCFTPLDKGVTKYSG 381 (776)
Q Consensus 305 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 381 (776)
..++..|..++.+-+|..++..+.. -.-|.++|..+|+.-. +-...+. .+-. .|+| +.
T Consensus 178 -----~AH~s~Iacv~Ln~~Gt~vATaStk---GTLIRIFdt~~g~~l~E~RRG~d~A~iy~i---aFSp--------~~ 238 (346)
T KOG2111|consen 178 -----NAHDSDIACVALNLQGTLVATASTK---GTLIRIFDTEDGTLLQELRRGVDRADIYCI---AFSP--------NS 238 (346)
T ss_pred -----EcccCceeEEEEcCCccEEEEeccC---cEEEEEEEcCCCcEeeeeecCCchheEEEE---EeCC--------Cc
Confidence 5688889999999999988877643 3458899998887533 2222111 1111 2344 23
Q ss_pred eEEEEeccCCceEEEEEe
Q 004067 382 GFIWASEKTGFRHLYLHD 399 (776)
Q Consensus 382 ~~~~~s~~~g~~~l~~~~ 399 (776)
.++.++.+-|.-||+..-
T Consensus 239 s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred cEEEEEcCCCeEEEEEee
Confidence 355566666756666554
No 486
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=94.87 E-value=0.053 Score=56.28 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=76.0
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCcccccccccccchhhhHHHHh-CCcEEEEECCCCCCCCchhhhhhhhhccC
Q 004067 537 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCG 615 (776)
Q Consensus 537 l~~~~~~P~~~~~~~~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rg~g~~~~~~~~~~~~~~~ 615 (776)
++..+|.|... +.+..++|+++||+--.. ..... -+ -.+.|+. ...+|+.++||- |-.|--+........|
T Consensus 121 LYlNVW~P~~~---p~n~tVlVWiyGGGF~sG-t~SLd-vY--dGk~la~~envIvVs~NYRv-G~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 121 LYLNVWAPAAD---PYNLTVLVWIYGGGFYSG-TPSLD-VY--DGKFLAAVENVIVVSMNYRV-GAFGFLYLPGHPEAPG 192 (601)
T ss_pred eEEEEeccCCC---CCCceEEEEEEcCccccC-Cccee-ee--ccceeeeeccEEEEEeeeee-ccceEEecCCCCCCCC
Confidence 77888888421 134459999999642111 00000 01 1334554 457888999982 2222111111112222
Q ss_pred CccHHHHHHHHHHHHHc---CCCCCCcEEEEeechHHHHHHHHHhh--CCCceEEEEEcCCCCC
Q 004067 616 RIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 674 (776)
Q Consensus 616 ~~~~~D~~~~i~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~~~~~~~~v~~~~~~~ 674 (776)
.--+.|+.-|++|+.++ ..-|+++|.++|.|+|+.-+..-+.. -..+|+.+|+.+|..+
T Consensus 193 NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 33378999999999886 33589999999999998765443322 1236788888777543
No 487
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.87 E-value=3.9 Score=42.43 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=93.4
Q ss_pred CCeeeEEEeecCCCceEEEEeCCCc------EEEEeCCC--Cccc-------eecCCCCCC-------CccCceeCCCCC
Q 004067 125 LGVTRYEWVKTSSKKKIIMVPLPDG------IYFQDLSC--SKPE-------LKLSSSSCS-------PVIDPHLSSDGT 182 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~~~~~------l~~~d~~~--~~~~-------~~l~~~~~~-------~~~~~~~SpDg~ 182 (776)
.+++...+.| .+|++++++.++. +|..++.. +... ..|....+. ....+++.+||.
T Consensus 20 GGlSgl~~~~--~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDP--DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred CcEeeEEEeC--CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4677888883 1677777776666 77666554 1111 022221111 234566666665
Q ss_pred EEEEE-EC------CcEEEEecCCCceeEEeeCCCCCce-ecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCe
Q 004067 183 MIAFV-RD------CELHVLNLLINEQRQLTHGANGNTV-THGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPR 254 (776)
Q Consensus 183 ~la~~-~~------~~l~~~~l~~g~~~~lt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 254 (776)
.++-. .. ..|+.++.++...+.+.. +..... ..+...+ ..-.-.++++++|||+.|+......-..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~---~~N~G~E~la~~~dG~~l~~~~E~~l~~-- 171 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGR---RNNRGFEGLAVSPDGRTLFAAMESPLKQ-- 171 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEcc-ccccccccCccccc---cCCCCeEEEEECCCCCEEEEEECccccC--
Confidence 33222 23 358888877333333311 110000 0000000 0001257899999999877665321000
Q ss_pred EEEeecCCCCCCCCCcceecCCCCCCCCCeEEEEEEEcCCCc--eEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEE
Q 004067 255 FRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVL 332 (776)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 332 (776)
.+.. ... .......|+.+|..++. ..........+........+.++.+-+|++.++.-.
T Consensus 172 -----d~~~----------~~~---~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 172 -----DGPR----------ANP---DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred -----CCcc----------ccc---ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 0000 000 00111567777877622 222111100000011456788999999999666543
Q ss_pred ee---cCceEEEEEEECCC
Q 004067 333 NR---SQTKLKVLKFDIKT 348 (776)
Q Consensus 333 ~~---~~~~~~l~~~d~~~ 348 (776)
.- ......||.+++..
T Consensus 234 ~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 234 DFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred cCCCCccceEEEEEEEccc
Confidence 31 12456788888754
No 488
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.82 E-value=8.3 Score=42.91 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=38.1
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEE-------EEeccCCe--EEEEEEeecCceEEEEEEECCC
Q 004067 278 AGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLAR-------VNWMHGNI--LTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 278 ~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~SpDg~--~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
.|+..-...|...|++||+.+.--.. ..++....+ +..-.||+ .++... .+...+|.+|.++
T Consensus 264 ~gdnl~~~s~vAld~~TG~~~W~~Q~------~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~---~K~G~~~vlDr~t 334 (527)
T TIGR03075 264 PGDNLYTSSIVARDPDTGKIKWHYQT------TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA---DRNGFFYVLDRTN 334 (527)
T ss_pred CCCCccceeEEEEccccCCEEEeeeC------CCCCCccccCCCCcEEEEeccCCcEEEEEEEe---CCCceEEEEECCC
Confidence 34444557799999999998764322 222222111 11224776 333332 2566799999999
Q ss_pred Cce
Q 004067 349 GQR 351 (776)
Q Consensus 349 g~~ 351 (776)
|+.
T Consensus 335 G~~ 337 (527)
T TIGR03075 335 GKL 337 (527)
T ss_pred Cce
Confidence 976
No 489
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.61 E-value=4.5 Score=42.04 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=51.8
Q ss_pred CCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeec
Q 004067 56 APTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKT 135 (776)
Q Consensus 56 ~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~ 135 (776)
+|.+++|.|||+.++ +++. ..|++++.++.....+...+. +... ...+...+.++|.
T Consensus 3 ~P~~~a~~pdG~l~v--~e~~----G~i~~~~~~g~~~~~v~~~~~-------v~~~----------~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV--AERS----GRIWVVDKDGSLKTPVADLPE-------VFAD----------GERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEE--EETT----TEEEEEETTTEECEEEEE-TT-------TBTS----------TTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEE--EeCC----ceEEEEeCCCcCcceeccccc-------cccc----------ccCCcccceeccc
Confidence 458899999997644 4444 369999955444244443211 1000 0146778888882
Q ss_pred CCCceEEEEeCC----------CcEEEEeCCCC--c---cceec---CC--CCCCCccCceeCCCCC
Q 004067 136 SSKKKIIMVPLP----------DGIYFQDLSCS--K---PELKL---SS--SSCSPVIDPHLSSDGT 182 (776)
Q Consensus 136 ~~dg~~l~~~~~----------~~l~~~d~~~~--~---~~~~l---~~--~~~~~~~~~~~SpDg~ 182 (776)
-+...+|++... ..|.++.++.+ . .+..+ .. ........+.|.|||+
T Consensus 60 f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~ 126 (331)
T PF07995_consen 60 FASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK 126 (331)
T ss_dssp CCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE
T ss_pred cCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc
Confidence 222344444311 24777766554 1 11011 11 1111235589999993
No 490
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=0.089 Score=56.88 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=93.7
Q ss_pred CCeeeEEEeecCCCceEEEEe-CCCcEEEEeCCCCccceecCCCCCCCccCceeCCCCCEEEEEE-CCcEEEEecC-CCc
Q 004067 125 LGVTRYEWVKTSSKKKIIMVP-LPDGIYFQDLSCSKPELKLSSSSCSPVIDPHLSSDGTMIAFVR-DCELHVLNLL-INE 201 (776)
Q Consensus 125 ~~~~~~~~sp~~~dg~~l~~~-~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~SpDg~~la~~~-~~~l~~~~l~-~g~ 201 (776)
.+|.++.|++ +-..|+-. .++.|.+||++.++..+.|+.+.. .+..+.|+|=|.+.|--+ +.|+-+||.. -|-
T Consensus 71 spIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 71 SPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC 146 (825)
T ss_pred CcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhcccc-CcceeeeccceEEeccccccccceehhhhccCc
Confidence 4678888988 66666654 667999999999887756765544 366778999988775433 3467777765 222
Q ss_pred eeEEeeCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEecCCCCCeEEEeecCCCCCCCCCcceecCCCCCCC
Q 004067 202 QRQLTHGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS 281 (776)
Q Consensus 202 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 281 (776)
.... .+ ..| .+.-++++|||++++-...+
T Consensus 147 ~~~~----------~s-~~~-------vv~~l~lsP~Gr~v~~g~ed--------------------------------- 175 (825)
T KOG0267|consen 147 SHTY----------KS-HTR-------VVDVLRLSPDGRWVASGGED--------------------------------- 175 (825)
T ss_pred eeee----------cC-Ccc-------eeEEEeecCCCceeeccCCc---------------------------------
Confidence 2111 11 011 14467899999988754321
Q ss_pred CCeEEEEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECCC
Q 004067 282 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 348 (776)
Q Consensus 282 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 348 (776)
..+.+||..-|+...- +..+.+.+..+.|.|-.-.+ +.+..+..+..||+++
T Consensus 176 ---~tvki~d~~agk~~~e--------f~~~e~~v~sle~hp~e~Ll----a~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 176 ---NTVKIWDLTAGKLSKE--------FKSHEGKVQSLEFHPLEVLL----APGSSDRTVRFWDLET 227 (825)
T ss_pred ---ceeeeecccccccccc--------cccccccccccccCchhhhh----ccCCCCceeeeeccce
Confidence 3467888876665432 12234444444555543222 2333566788888765
No 491
>PRK13615 lipoprotein LpqB; Provisional
Probab=94.39 E-value=0.99 Score=49.68 Aligned_cols=142 Identities=11% Similarity=-0.007 Sum_probs=82.1
Q ss_pred CCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEEEeecC
Q 004067 57 PTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYEWVKTS 136 (776)
Q Consensus 57 ~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~sp~~ 136 (776)
+.+++.|+||+.+|++.. . ..+++.... +..+.+.. ......++|++
T Consensus 336 ~~s~avS~dg~~~A~v~~-~----~~l~vg~~~-~~~~~~~~-------------------------~~~Lt~PS~d~-- 382 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA-S----GVWSVGDGD-RDAVLLDT-------------------------RPGLVAPSLDA-- 382 (557)
T ss_pred cccceEcCCCceEEEEcC-C----ceEEEecCC-Ccceeecc-------------------------CCccccCcCcC--
Confidence 478899999999999954 2 256666554 44444442 13467788988
Q ss_pred CCceEEEEeCCCcEEEE-eC-CCCccc-eecCCCCCCCccCceeCCCCCEEEEEEC----CcEEEEec--CCCceeEE-e
Q 004067 137 SKKKIIMVPLPDGIYFQ-DL-SCSKPE-LKLSSSSCSPVIDPHLSSDGTMIAFVRD----CELHVLNL--LINEQRQL-T 206 (776)
Q Consensus 137 ~dg~~l~~~~~~~l~~~-d~-~~~~~~-~~l~~~~~~~~~~~~~SpDg~~la~~~~----~~l~~~~l--~~g~~~~l-t 206 (776)
+| ++....+++-.++ .. .+|+.. .......+..+..++.|+||-++|++.+ .+|++--+ .++..+.| +
T Consensus 383 -~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~ 460 (557)
T PRK13615 383 -QG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTT 460 (557)
T ss_pred -CC-CEEEEeCCCceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeee
Confidence 87 6766544332222 11 223333 1111122335888999999999999986 56765433 34444555 3
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEE
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQ 246 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~ 246 (776)
.--. ... +.....++.|..|++ |+...
T Consensus 461 ~p~~---l~~---------~l~~v~sl~W~~~~~-laVl~ 487 (557)
T PRK13615 461 TPLE---LLA---------SPGTPLDATWVDELD-VATLT 487 (557)
T ss_pred ccEE---ccc---------CcCcceeeEEcCCCE-EEEEe
Confidence 2110 000 111255788999887 55554
No 492
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=94.36 E-value=0.66 Score=44.22 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEEC
Q 004067 310 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 346 (776)
Q Consensus 310 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 346 (776)
.-+...+..++||||...++..+ .+..|-+|++
T Consensus 290 kyHsagvn~vAfspd~~lmAaas----kD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAAS----KDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhcc----CCceEEeeec
Confidence 44667889999999977777665 5667877764
No 493
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=94.35 E-value=0.059 Score=50.45 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=52.2
Q ss_pred CcEEEEECCCCCCCCchh-hhhhhhhccCCccHHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC----C--
Q 004067 588 GILVWKLDNRGTARRGLK-FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----P-- 660 (776)
Q Consensus 588 G~~v~~~d~rg~g~~~~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----~-- 660 (776)
--.|++|-||-..-...- .............+.|+.+|.++.+++.. +...++|+|||.|+.+...++..+ |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 357888888843211100 00000111122348899999999888752 335799999999999999998753 2
Q ss_pred -CceEEEEEcCCCC
Q 004067 661 -DVFQCAVSGAPVT 673 (776)
Q Consensus 661 -~~~~~~v~~~~~~ 673 (776)
.++.|.++..++.
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2455555555543
No 494
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.29 Score=44.89 Aligned_cols=101 Identities=26% Similarity=0.288 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcccccccccc-----------cchhhhHHHHhCCcEEEEECCCCCCCCchhhhhhhhhc--cCCccH
Q 004067 553 PYKTLISVYGGPCVQLVCDSWIN-----------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN--CGRIDA 619 (776)
Q Consensus 553 ~~p~vl~~HG~~~~~~~~~~~~~-----------~~~~~~~~l~~~G~~v~~~d~rg~g~~~~~~~~~~~~~--~~~~~~ 619 (776)
+..+++++||.+-... ..|.. .--+.+....+.||-|+..+.- ..+.|.+..... +....+
T Consensus 100 ~~kLlVLIHGSGvVrA--GQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N----~~~kfye~k~np~kyirt~v 173 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRA--GQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPN----RERKFYEKKRNPQKYIRTPV 173 (297)
T ss_pred ccceEEEEecCceEec--chHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCc----hhhhhhhcccCcchhccchH
Confidence 4458999999432211 12211 1112355567789999988853 112222211110 111123
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCCC
Q 004067 620 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 661 (776)
Q Consensus 620 ~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~ 661 (776)
+...-....++.. .....|+++.||+||.+++.++.+.|+
T Consensus 174 eh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 174 EHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 3344444444332 256789999999999999999998875
No 495
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=94.30 E-value=0.1 Score=47.37 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhCC
Q 004067 621 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 660 (776)
Q Consensus 621 D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~ 660 (776)
.+...++....+. ...+|.++|||+||.+|..++....
T Consensus 13 ~i~~~~~~~~~~~--p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 13 LVLPLLKSALAQY--PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHC--CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444332 4579999999999999999887653
No 496
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.087 Score=57.95 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcC-----C--CCCCcEEEEeechHHHHHHHHHhh
Q 004067 620 EDQLTGAEWLIKQG-----L--AKVGHIGLYGWSYGGYLSAITLAR 658 (776)
Q Consensus 620 ~D~~~~i~~l~~~~-----~--id~~~i~l~G~S~GG~~a~~~a~~ 658 (776)
+=+..||+++.+.. + -.+..|+++||||||.+|-.++..
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl 202 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL 202 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence 34566666666531 1 125679999999999999877764
No 497
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.24 E-value=5.7 Score=38.55 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=84.1
Q ss_pred CCCcCCCceeEcCCCCEEEEEeCCCCcCcceEEEEecCCCceEEeecCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeeEE
Q 004067 52 PGYVAPTSIGFSPDDNLITYLLSPDHSLSRKVFSFDPKTCKQELVFSPPDGGLDENNISPEEKLRRERLRERGLGVTRYE 131 (776)
Q Consensus 52 ~~~~~~~~~~~SpDG~~ia~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (776)
..|..+..++-+|||. +-|..... ..|=..|+.+|+..+.---. +..-+...
T Consensus 59 p~G~ap~dvapapdG~-VWft~qg~----gaiGhLdP~tGev~~ypLg~-----------------------Ga~Phgiv 110 (353)
T COG4257 59 PNGSAPFDVAPAPDGA-VWFTAQGT----GAIGHLDPATGEVETYPLGS-----------------------GASPHGIV 110 (353)
T ss_pred CCCCCccccccCCCCc-eEEecCcc----ccceecCCCCCceEEEecCC-----------------------CCCCceEE
Confidence 3566667888899996 55655443 45888899999987655210 11223445
Q ss_pred EeecCCCceEEEEeCCCcEEEEeCCCCccceecC----CCCCCCccCceeCCCCCEEEEEECCcEE-EEecCCCceeEEe
Q 004067 132 WVKTSSKKKIIMVPLPDGIYFQDLSCSKPELKLS----SSSCSPVIDPHLSSDGTMIAFVRDCELH-VLNLLINEQRQLT 206 (776)
Q Consensus 132 ~sp~~~dg~~l~~~~~~~l~~~d~~~~~~~~~l~----~~~~~~~~~~~~SpDg~~la~~~~~~l~-~~~l~~g~~~~lt 206 (776)
..| ||..-+......|-++|-++.+.+ +++ ... .....+.|-++|. |-|+...-.| ..|...+..+..-
T Consensus 111 ~gp---dg~~Witd~~~aI~R~dpkt~evt-~f~lp~~~a~-~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfp 184 (353)
T COG4257 111 VGP---DGSAWITDTGLAIGRLDPKTLEVT-RFPLPLEHAD-ANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFP 184 (353)
T ss_pred ECC---CCCeeEecCcceeEEecCcccceE-EeecccccCC-CcccceeeCCCcc-EEEeeccccceecCcccCceeeec
Confidence 667 877444433336778888777766 322 222 2366788998886 5666553322 4455555444332
Q ss_pred eCCCCCceecCCcccceecccCCcceEEECCCCCeEEEEEe
Q 004067 207 HGANGNTVTHGLAEYIAQEEMDRKTGYWWSLDSKFIAFTQV 247 (776)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wspDg~~l~~~~~ 247 (776)
.-... ...++.-.|||. +.|.+.
T Consensus 185 aPqG~-----------------gpyGi~atpdGs-vwyasl 207 (353)
T COG4257 185 APQGG-----------------GPYGICATPDGS-VWYASL 207 (353)
T ss_pred cCCCC-----------------CCcceEECCCCc-EEEEec
Confidence 21110 023566889997 777653
No 498
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=94.15 E-value=1.4 Score=46.55 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=64.9
Q ss_pred CCceEEEEEcCCCCcccccccccccchhhhHHHHhCCcEE-EEECCCCCCCCchhhhhhhhhccCCccH-HHHHHHHHHH
Q 004067 552 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV-WKLDNRGTARRGLKFEASIKHNCGRIDA-EDQLTGAEWL 629 (776)
Q Consensus 552 ~~~p~vl~~HG~~~~~~~~~~~~~~~~~~~~~l~~~G~~v-~~~d~rg~g~~~~~~~~~~~~~~~~~~~-~D~~~~i~~l 629 (776)
-|-|+.|++.|.=. .++|.. .-.|.+.|.-. +.-|.|--|+. | -.|..++ +.+++.|+..
T Consensus 287 ~KPPL~VYFSGyR~----aEGFEg-----y~MMk~Lg~PfLL~~DpRleGGa---F------YlGs~eyE~~I~~~I~~~ 348 (511)
T TIGR03712 287 FKPPLNVYFSGYRP----AEGFEG-----YFMMKRLGAPFLLIGDPRLEGGA---F------YLGSDEYEQGIINVIQEK 348 (511)
T ss_pred CCCCeEEeeccCcc----cCcchh-----HHHHHhcCCCeEEeeccccccce---e------eeCcHHHHHHHHHHHHHH
Confidence 46699999988322 123322 12455666644 44588855543 1 1111111 2355555555
Q ss_pred HHcCCCCCCcEEEEeechHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 004067 630 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 675 (776)
Q Consensus 630 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~v~~~~~~~~ 675 (776)
.+.-..+.+.+++.|.|||.+-|+++++.-. -.|+|+.-|..+.
T Consensus 349 L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL~NL 392 (511)
T TIGR03712 349 LDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPLVNL 392 (511)
T ss_pred HHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcccch
Confidence 5544458889999999999999999999753 2688888888764
No 499
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=94.10 E-value=0.095 Score=46.64 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeechHHHHHHHHHhhC---C----CceEEEEEcCCC
Q 004067 619 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF---P----DVFQCAVSGAPV 672 (776)
Q Consensus 619 ~~D~~~~i~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---~----~~~~~~v~~~~~ 672 (776)
...+...++.+.++.. ..+|.+.|||+||.+|..++... . ..+.+..-.+|-
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~ 105 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPR 105 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S-
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCcc
Confidence 4456666666666543 37999999999999999988751 1 345555555554
No 500
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.10 E-value=1.8 Score=42.26 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=33.9
Q ss_pred EEEEEcCCCceEEEEcccCCCCCCCCcceEEEEEeccCCeEEEEEEeecCceEEEEEEECC
Q 004067 287 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 347 (776)
Q Consensus 287 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 347 (776)
.-+||.++|++..+ +.+++......+-.|.-+ |+.++++ +....+||..
T Consensus 296 AnlwDVEtge~v~~--------LtGHd~ELtHcstHptQr-LVvTsSr---DtTFRLWDFR 344 (481)
T KOG0300|consen 296 ANLWDVETGEVVNI--------LTGHDSELTHCSTHPTQR-LVVTSSR---DTTFRLWDFR 344 (481)
T ss_pred ceeeeeccCceecc--------ccCcchhccccccCCcce-EEEEecc---CceeEeccch
Confidence 47899999998766 356777777777777665 5555544 4456777775
Done!