BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004068
(775 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 573 CLAGS-KAENMLEQGDMMLAINKQPVTCFHDIENACQALDKDGEDNGKLDITIFRQGREI 631
L GS A+ ++ GD++ ++N +P+ F ++ + E K+ + + R G+ +
Sbjct: 270 VLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATT----EPGTKVKLGLLRNGKPL 325
Query: 632 ELQVGTDVRDGNGTTRVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYG 691
E++V D +T I A + G L + G G+ + GSP + G
Sbjct: 326 EVEVTLDT-----STSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG 380
Query: 692 LYALQWIVEINGKR 705
L I+ +N R
Sbjct: 381 LQKDDVIIGVNRDR 394
>pdb|2PQS|A Chain A, Crystal Structure Of The Bovine Lactadherin C2 Domain
pdb|2PQS|B Chain B, Crystal Structure Of The Bovine Lactadherin C2 Domain
pdb|2PQS|C Chain C, Crystal Structure Of The Bovine Lactadherin C2 Domain
pdb|2PQS|D Chain D, Crystal Structure Of The Bovine Lactadherin C2 Domain
Length = 159
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 146 YTRNDSSG---LWSANPAILSEVLMPSSGINGGVQGVASQTVSICGELVHMEHMHQRNNQ 202
Y R D+ G W+A SE L G V G+ +Q G H++++
Sbjct: 38 YARLDNQGKFNAWTAQTNSASEWLQIDLGSQKRVTGIITQGARDFG---HIQYVAAYRVA 94
Query: 203 ELTDGVTSMETACEHASAESISRGESDNGRKKRRVEE 239
DGVT E AS I G DN K+ + E
Sbjct: 95 YGDDGVTWTEYKDPGASESKIFPGNMDNNSHKKNIFE 131
>pdb|3Q31|A Chain A, Structure Of Fungal Alpha Carbonic Anhydrase From
Aspergillus Oryzae
pdb|3Q31|B Chain B, Structure Of Fungal Alpha Carbonic Anhydrase From
Aspergillus Oryzae
Length = 244
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 257 DARLEDSSTMENAGSRDYFGAPAATTNASFAESVIEPTLVMFEVHVPPSCMIDGVHSQHF 316
D L D S +EN G FG TN S + TL F H P V+ +HF
Sbjct: 59 DLPLADGSKLENLG----FGLQVTLTNGSLTANSKTYTLAQFHFHTPSE---HHVNEEHF 111
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 655 IVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVN 714
+V++PH + + +LPEE G+ + G+ L+++ + ++E V
Sbjct: 79 VVEEPHEVRKLISYLPEEA----------GAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 715 VTKEIEH-GEFVRVR-TVHLNGKPRVLTLKQDLHYWPTWELIFDPDTAL 761
EI GE ++ R + + G R L + + L P ++ +P + L
Sbjct: 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
>pdb|3BN6|A Chain A, Crystal Structure Of The C2 Domain Of Bovine Lactadherin
At 1.67 Angstrom Resolution
Length = 158
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 146 YTRNDSSG---LWSANPAILSEVLMPSSGINGGVQGVASQTVSICGELVHMEHMHQRNNQ 202
Y R D+ G W+A SE L G V G+ +Q G H++++
Sbjct: 37 YARLDNQGKFNAWTAQTNSASEWLQIDLGSQKRVTGIITQGARDFG---HIQYVAAYRVA 93
Query: 203 ELTDGVTSMETACEHASAESISRGESDNGRKKRRVEE 239
DGVT E AS I G DN K+ + E
Sbjct: 94 YGDDGVTWTEYKDPGASESKIFPGNMDNNSHKKNIFE 130
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 675 GVYVARWCHGSPVHRYGLYALQWIVEINGKRTPDLEAFVNVTKEIEHGEFVRVRTVHLNG 734
G ++ R GSP L A +VE+NG VNV E H R++ V G
Sbjct: 26 GQFIRRVEPGSPAEAAALRAGDRLVEVNG---------VNVEGETHHQVVQRIKAV--EG 74
Query: 735 KPRVLTLKQD 744
+ R+L + Q+
Sbjct: 75 QTRLLVVDQE 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,776,209
Number of Sequences: 62578
Number of extensions: 954675
Number of successful extensions: 2268
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2267
Number of HSP's gapped (non-prelim): 9
length of query: 775
length of database: 14,973,337
effective HSP length: 106
effective length of query: 669
effective length of database: 8,340,069
effective search space: 5579506161
effective search space used: 5579506161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)