Query 004069
Match_columns 775
No_of_seqs 624 out of 3746
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 17:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 2E-40 4.3E-45 342.1 30.7 246 194-449 81-327 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 2.5E-38 5.4E-43 354.9 31.6 248 195-457 57-307 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-38 3E-43 349.4 28.4 244 196-443 3-339 (352)
4 KOG0145 RNA-binding protein EL 100.0 7.3E-35 1.6E-39 280.6 20.4 245 195-443 40-348 (360)
5 TIGR01628 PABP-1234 polyadenyl 100.0 4.9E-34 1.1E-38 331.9 27.7 236 198-441 2-245 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.2E-32 4.8E-37 318.0 34.4 244 195-444 87-355 (562)
7 TIGR01622 SF-CC1 splicing fact 100.0 2.5E-31 5.3E-36 302.2 26.6 240 194-444 87-439 (457)
8 KOG0127 Nucleolar protein fibr 100.0 2E-31 4.3E-36 281.0 21.3 233 196-435 5-354 (678)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-30 2.3E-35 296.4 26.5 230 196-444 2-342 (481)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-30 2.8E-35 300.5 24.8 240 192-444 171-493 (509)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.2E-30 1.8E-34 289.2 26.6 243 197-456 97-479 (481)
12 KOG0144 RNA-binding protein CU 100.0 2.6E-30 5.7E-35 265.9 19.4 248 196-447 34-498 (510)
13 TIGR01659 sex-lethal sex-letha 100.0 2E-28 4.3E-33 262.9 23.1 170 274-454 105-274 (346)
14 KOG0148 Apoptosis-promoting RN 100.0 3.8E-28 8.3E-33 236.3 20.7 222 195-456 5-237 (321)
15 TIGR01645 half-pint poly-U bin 100.0 2.1E-27 4.5E-32 267.1 27.4 159 194-358 105-280 (612)
16 KOG0123 Polyadenylate-binding 99.9 2.6E-25 5.6E-30 239.9 20.8 229 198-442 3-235 (369)
17 TIGR01659 sex-lethal sex-letha 99.9 1.6E-25 3.6E-30 240.4 18.1 164 194-361 105-274 (346)
18 KOG0123 Polyadenylate-binding 99.9 1.4E-24 3E-29 234.3 19.2 235 198-443 78-339 (369)
19 KOG0127 Nucleolar protein fibr 99.9 2.4E-24 5.3E-29 227.7 15.7 237 195-435 116-516 (678)
20 TIGR01645 half-pint poly-U bin 99.9 2.2E-23 4.7E-28 234.8 19.0 172 275-454 106-283 (612)
21 KOG0110 RNA-binding protein (R 99.9 3.7E-23 8.1E-28 226.2 16.4 244 192-446 381-686 (725)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.9E-23 1.7E-27 224.6 18.9 166 275-451 2-167 (352)
23 KOG0144 RNA-binding protein CU 99.9 2.6E-23 5.6E-28 214.6 12.3 173 277-459 35-208 (510)
24 KOG0147 Transcriptional coacti 99.9 1.4E-22 3.1E-27 216.3 12.4 244 194-449 177-524 (549)
25 TIGR01622 SF-CC1 splicing fact 99.9 9.6E-22 2.1E-26 223.6 18.8 163 274-443 87-256 (457)
26 KOG0148 Apoptosis-promoting RN 99.9 7.9E-22 1.7E-26 192.5 13.0 154 196-361 62-237 (321)
27 KOG0124 Polypyrimidine tract-b 99.9 4.4E-21 9.5E-26 193.5 17.5 146 196-344 113-275 (544)
28 KOG4212 RNA-binding protein hn 99.9 1.8E-20 4E-25 193.2 20.2 142 197-343 45-278 (608)
29 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-20 2.3E-25 213.1 19.3 174 248-438 19-205 (578)
30 KOG0109 RNA-binding protein LA 99.8 1.1E-20 2.3E-25 186.4 15.2 179 278-494 4-182 (346)
31 KOG0145 RNA-binding protein EL 99.8 8.9E-21 1.9E-25 183.5 12.2 169 274-453 39-207 (360)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.8 3.9E-20 8.4E-25 213.4 17.2 167 273-452 172-372 (509)
33 KOG0117 Heterogeneous nuclear 99.8 9.6E-20 2.1E-24 189.4 14.7 165 274-456 81-247 (506)
34 KOG0109 RNA-binding protein LA 99.8 5.1E-20 1.1E-24 181.6 8.8 152 197-370 3-158 (346)
35 KOG0131 Splicing factor 3b, su 99.8 1.6E-19 3.6E-24 166.9 11.4 169 275-455 8-177 (203)
36 KOG0131 Splicing factor 3b, su 99.8 4.7E-19 1E-23 163.9 10.0 166 195-365 8-180 (203)
37 KOG0110 RNA-binding protein (R 99.8 1.9E-18 4.1E-23 189.6 14.7 219 196-449 227-594 (725)
38 KOG4211 Splicing factor hnRNP- 99.8 1.1E-16 2.4E-21 169.3 23.7 237 195-441 9-346 (510)
39 KOG0146 RNA-binding protein ET 99.7 7.4E-18 1.6E-22 164.0 11.1 174 265-442 2-354 (371)
40 PLN03134 glycine-rich RNA-bind 99.7 1.5E-16 3.3E-21 149.9 15.3 72 371-442 32-103 (144)
41 KOG0107 Alternative splicing f 99.7 5.3E-16 1.1E-20 143.0 15.4 75 374-457 11-85 (195)
42 KOG0124 Polypyrimidine tract-b 99.7 8.8E-17 1.9E-21 162.6 10.8 162 277-444 114-281 (544)
43 KOG0105 Alternative splicing f 99.7 1.2E-15 2.7E-20 141.1 15.2 165 275-455 5-190 (241)
44 KOG4205 RNA-binding protein mu 99.7 1.2E-16 2.7E-21 166.5 9.3 199 195-401 5-215 (311)
45 KOG0147 Transcriptional coacti 99.7 1.2E-16 2.7E-21 171.2 7.7 169 274-449 177-354 (549)
46 KOG1190 Polypyrimidine tract-b 99.6 2E-15 4.4E-20 155.5 15.0 239 195-456 27-372 (492)
47 KOG0120 Splicing factor U2AF, 99.6 2.7E-15 5.9E-20 163.6 13.7 236 195-443 174-482 (500)
48 KOG4205 RNA-binding protein mu 99.6 1.5E-15 3.2E-20 158.4 11.1 171 275-455 5-176 (311)
49 KOG1190 Polypyrimidine tract-b 99.6 1.5E-14 3.2E-19 149.3 17.5 236 197-455 151-489 (492)
50 KOG1456 Heterogeneous nuclear 99.6 6E-14 1.3E-18 143.0 17.8 235 195-449 30-359 (494)
51 KOG4206 Spliceosomal protein s 99.6 6.1E-14 1.3E-18 135.8 15.8 196 197-441 10-209 (221)
52 KOG0105 Alternative splicing f 99.6 1.4E-14 3.1E-19 134.1 10.7 140 194-346 4-175 (241)
53 KOG4207 Predicted splicing fac 99.5 7.3E-14 1.6E-18 131.8 13.7 72 373-444 13-84 (256)
54 KOG4211 Splicing factor hnRNP- 99.5 4E-12 8.6E-17 135.2 28.0 162 278-451 12-178 (510)
55 KOG0146 RNA-binding protein ET 99.5 4.4E-14 9.4E-19 137.9 9.9 161 195-362 18-365 (371)
56 PLN03134 glycine-rich RNA-bind 99.5 1.2E-13 2.6E-18 130.2 9.5 83 194-276 32-114 (144)
57 KOG0113 U1 small nuclear ribon 99.5 2.8E-12 6E-17 128.0 18.8 83 371-455 99-181 (335)
58 KOG1457 RNA binding protein (c 99.5 5.1E-13 1.1E-17 127.6 12.5 160 276-441 34-274 (284)
59 KOG1365 RNA-binding protein Fu 99.5 8.4E-13 1.8E-17 135.1 14.1 246 192-441 56-350 (508)
60 KOG0106 Alternative splicing f 99.4 1.4E-13 3.1E-18 134.9 5.8 146 277-444 2-162 (216)
61 KOG1548 Transcription elongati 99.4 2.6E-12 5.6E-17 130.6 14.8 192 195-444 133-343 (382)
62 KOG0122 Translation initiation 99.4 6.4E-13 1.4E-17 129.1 8.7 82 372-457 188-269 (270)
63 KOG1456 Heterogeneous nuclear 99.4 2.6E-11 5.6E-16 124.0 19.6 239 199-455 125-489 (494)
64 KOG1457 RNA binding protein (c 99.4 4E-12 8.8E-17 121.5 12.4 145 196-347 34-274 (284)
65 PF00076 RRM_1: RNA recognitio 99.4 1.2E-12 2.5E-17 107.7 7.3 66 376-442 1-66 (70)
66 KOG0121 Nuclear cap-binding pr 99.4 1E-12 2.3E-17 114.8 6.5 71 372-442 35-105 (153)
67 PF00076 RRM_1: RNA recognitio 99.3 4.4E-12 9.4E-17 104.3 7.2 70 199-269 1-70 (70)
68 KOG0149 Predicted RNA-binding 99.3 3.6E-12 7.8E-17 123.6 7.4 77 196-273 12-88 (247)
69 KOG0149 Predicted RNA-binding 99.3 3.6E-12 7.7E-17 123.7 7.3 78 372-450 11-88 (247)
70 KOG4212 RNA-binding protein hn 99.3 5.8E-11 1.3E-15 123.6 16.1 160 274-441 42-282 (608)
71 KOG0122 Translation initiation 99.3 7.4E-12 1.6E-16 121.8 7.8 82 195-276 188-269 (270)
72 PF14259 RRM_6: RNA recognitio 99.3 1.1E-11 2.5E-16 102.0 7.3 66 376-442 1-66 (70)
73 KOG0121 Nuclear cap-binding pr 99.3 8.6E-12 1.9E-16 109.2 6.5 85 189-273 29-113 (153)
74 KOG0126 Predicted RNA-binding 99.3 9.8E-13 2.1E-17 122.0 0.6 112 335-456 7-118 (219)
75 KOG0106 Alternative splicing f 99.3 4.1E-12 8.9E-17 124.7 4.7 137 198-356 3-165 (216)
76 KOG0125 Ataxin 2-binding prote 99.2 1.8E-11 4E-16 123.6 8.6 81 371-455 94-174 (376)
77 PF14259 RRM_6: RNA recognitio 99.2 2.8E-11 6.2E-16 99.7 8.0 70 199-269 1-70 (70)
78 COG0724 RNA-binding proteins ( 99.2 9.1E-11 2E-15 123.5 13.7 173 196-437 115-289 (306)
79 PLN03120 nucleic acid binding 99.2 3.5E-11 7.6E-16 121.3 9.5 73 373-449 4-76 (260)
80 KOG0130 RNA-binding protein RB 99.2 3E-11 6.6E-16 106.6 7.8 85 371-457 70-154 (170)
81 KOG0126 Predicted RNA-binding 99.2 3.6E-12 7.8E-17 118.3 0.9 80 194-273 33-112 (219)
82 KOG4207 Predicted splicing fac 99.2 3.1E-11 6.7E-16 114.3 5.2 78 196-273 13-90 (256)
83 KOG0113 U1 small nuclear ribon 99.2 5.5E-11 1.2E-15 118.8 7.2 77 196-272 101-177 (335)
84 PLN03213 repressor of silencin 99.1 8.5E-11 1.9E-15 124.0 8.4 70 372-445 9-80 (759)
85 KOG0111 Cyclophilin-type pepti 99.1 3.3E-11 7.2E-16 114.9 4.8 85 371-459 8-92 (298)
86 PLN03120 nucleic acid binding 99.1 9.9E-11 2.2E-15 118.0 8.4 76 196-275 4-79 (260)
87 KOG0107 Alternative splicing f 99.1 7.5E-11 1.6E-15 109.3 5.7 74 195-273 9-82 (195)
88 PLN03121 nucleic acid binding 99.1 2.1E-10 4.5E-15 113.8 9.0 69 372-444 4-72 (243)
89 KOG0130 RNA-binding protein RB 99.1 7E-11 1.5E-15 104.3 4.9 80 194-273 70-149 (170)
90 KOG0114 Predicted RNA-binding 99.1 2.6E-10 5.7E-15 96.2 8.0 67 373-442 18-84 (124)
91 smart00362 RRM_2 RNA recogniti 99.1 3.4E-10 7.5E-15 92.6 8.7 66 375-442 1-66 (72)
92 smart00360 RRM RNA recognition 99.1 4.7E-10 1E-14 91.4 8.8 65 378-442 1-65 (71)
93 PLN03213 repressor of silencin 99.1 2.1E-10 4.6E-15 121.1 7.3 77 196-276 10-88 (759)
94 KOG0128 RNA-binding protein SA 99.1 4.1E-11 8.8E-16 135.0 2.1 218 195-442 570-804 (881)
95 KOG0125 Ataxin 2-binding prote 99.1 2.7E-10 5.7E-15 115.3 7.0 76 196-273 96-171 (376)
96 smart00362 RRM_2 RNA recogniti 99.0 6.6E-10 1.4E-14 90.9 8.1 71 198-270 1-71 (72)
97 PLN03121 nucleic acid binding 99.0 4.6E-10 9.9E-15 111.3 8.3 77 195-275 4-80 (243)
98 smart00360 RRM RNA recognition 99.0 9.9E-10 2.2E-14 89.5 7.4 70 201-270 1-70 (71)
99 KOG0114 Predicted RNA-binding 99.0 1.6E-09 3.4E-14 91.6 7.4 75 196-273 18-92 (124)
100 KOG0111 Cyclophilin-type pepti 99.0 4.9E-10 1.1E-14 107.0 4.2 83 194-276 8-90 (298)
101 cd00590 RRM RRM (RNA recogniti 98.9 4.4E-09 9.4E-14 86.5 8.9 67 375-442 1-67 (74)
102 smart00361 RRM_1 RNA recogniti 98.9 2.7E-09 5.8E-14 87.8 7.4 57 387-443 2-65 (70)
103 COG0724 RNA-binding proteins ( 98.9 3.4E-09 7.3E-14 111.5 9.0 72 373-444 115-186 (306)
104 cd00590 RRM RRM (RNA recogniti 98.9 5.2E-09 1.1E-13 86.0 8.2 73 198-271 1-73 (74)
105 KOG1365 RNA-binding protein Fu 98.9 3.5E-09 7.6E-14 109.0 8.3 145 196-344 161-347 (508)
106 KOG0116 RasGAP SH3 binding pro 98.9 6.7E-09 1.5E-13 112.9 10.5 75 374-451 289-363 (419)
107 KOG0108 mRNA cleavage and poly 98.9 3.4E-09 7.3E-14 115.9 8.2 69 374-442 19-87 (435)
108 KOG0129 Predicted RNA-binding 98.9 1.9E-08 4.1E-13 108.4 13.2 164 276-440 259-442 (520)
109 KOG4208 Nucleolar RNA-binding 98.9 4.1E-09 8.8E-14 100.8 7.2 76 374-449 50-126 (214)
110 KOG4661 Hsp27-ERE-TATA-binding 98.9 1E-08 2.2E-13 110.1 10.7 83 193-275 402-484 (940)
111 KOG0108 mRNA cleavage and poly 98.8 4.5E-09 9.7E-14 115.0 6.9 79 197-275 19-97 (435)
112 KOG0120 Splicing factor U2AF, 98.8 7.6E-09 1.6E-13 113.6 8.6 158 196-358 289-488 (500)
113 KOG0415 Predicted peptidyl pro 98.8 1.1E-09 2.3E-14 111.6 1.8 81 194-274 237-317 (479)
114 KOG0415 Predicted peptidyl pro 98.8 3.3E-09 7.2E-14 108.1 5.1 81 370-452 236-316 (479)
115 KOG4210 Nuclear localization s 98.8 6.1E-09 1.3E-13 109.0 7.2 177 194-456 86-263 (285)
116 PF13893 RRM_5: RNA recognitio 98.8 2.5E-08 5.5E-13 78.1 8.1 48 390-442 1-48 (56)
117 smart00361 RRM_1 RNA recogniti 98.8 1.7E-08 3.7E-13 83.0 6.7 61 210-270 2-69 (70)
118 KOG4660 Protein Mei2, essentia 98.7 1.1E-07 2.4E-12 103.5 12.8 72 194-270 73-144 (549)
119 PF13893 RRM_5: RNA recognitio 98.7 2.5E-08 5.3E-13 78.2 5.4 56 213-273 1-56 (56)
120 KOG4307 RNA binding protein RB 98.7 7.4E-08 1.6E-12 106.1 9.9 151 281-440 316-501 (944)
121 KOG4676 Splicing factor, argin 98.6 6E-09 1.3E-13 107.7 0.6 202 198-441 9-214 (479)
122 KOG4454 RNA binding protein (R 98.6 1.5E-08 3.2E-13 97.3 1.7 135 195-342 8-146 (267)
123 KOG0112 Large RNA-binding prot 98.6 6.3E-08 1.4E-12 110.1 5.9 161 274-456 370-530 (975)
124 KOG0132 RNA polymerase II C-te 98.6 7.6E-08 1.7E-12 107.7 6.2 103 190-298 415-528 (894)
125 KOG4208 Nucleolar RNA-binding 98.5 1.2E-07 2.6E-12 90.8 6.3 77 196-272 49-126 (214)
126 KOG4307 RNA binding protein RB 98.5 6.9E-07 1.5E-11 98.7 11.5 69 374-442 868-936 (944)
127 KOG0128 RNA-binding protein SA 98.5 1.2E-08 2.6E-13 115.5 -2.2 134 195-343 666-799 (881)
128 KOG0129 Predicted RNA-binding 98.5 8.6E-07 1.9E-11 95.8 11.7 144 193-340 256-432 (520)
129 KOG0226 RNA-binding proteins [ 98.5 1.9E-07 4.1E-12 91.9 5.8 142 294-442 117-259 (290)
130 KOG0132 RNA polymerase II C-te 98.4 3.3E-07 7.1E-12 102.7 7.3 67 370-442 418-484 (894)
131 KOG0112 Large RNA-binding prot 98.4 1.4E-07 3.1E-12 107.3 4.4 166 189-365 365-534 (975)
132 KOG4661 Hsp27-ERE-TATA-binding 98.4 4.8E-07 1E-11 97.5 7.7 72 372-443 404-475 (940)
133 KOG4206 Spliceosomal protein s 98.4 8E-07 1.7E-11 86.8 7.5 77 372-455 8-88 (221)
134 KOG0153 Predicted RNA-binding 98.4 8E-07 1.7E-11 91.3 7.8 75 372-456 227-302 (377)
135 KOG0153 Predicted RNA-binding 98.3 6.7E-07 1.5E-11 91.9 5.9 77 193-275 225-302 (377)
136 KOG4454 RNA binding protein (R 98.3 2.4E-07 5.3E-12 89.0 2.5 140 274-440 7-150 (267)
137 KOG0533 RRM motif-containing p 98.3 5.3E-06 1.1E-10 83.9 11.5 76 373-449 83-158 (243)
138 PF04059 RRM_2: RNA recognitio 98.3 4E-06 8.8E-11 72.5 8.6 82 374-455 2-85 (97)
139 KOG4209 Splicing factor RNPS1, 98.3 3.8E-06 8.3E-11 85.2 9.9 77 371-448 99-175 (231)
140 KOG4849 mRNA cleavage factor I 98.3 1E-05 2.2E-10 82.8 12.5 72 374-445 81-154 (498)
141 KOG1995 Conserved Zn-finger pr 98.2 3.5E-06 7.5E-11 87.6 7.3 84 371-456 64-155 (351)
142 PF04059 RRM_2: RNA recognitio 98.1 8.9E-06 1.9E-10 70.4 7.5 68 197-264 2-71 (97)
143 KOG4209 Splicing factor RNPS1, 98.0 5.9E-06 1.3E-10 83.8 5.9 82 191-273 96-177 (231)
144 KOG0533 RRM motif-containing p 98.0 9E-06 2E-10 82.2 6.6 78 195-273 82-159 (243)
145 KOG4660 Protein Mei2, essentia 98.0 3.9E-06 8.5E-11 91.6 3.2 71 371-446 73-143 (549)
146 KOG0116 RasGAP SH3 binding pro 97.9 1.5E-05 3.3E-10 87.1 5.3 75 196-271 288-362 (419)
147 KOG0226 RNA-binding proteins [ 97.8 1.6E-05 3.5E-10 78.6 4.7 78 195-272 189-266 (290)
148 KOG0151 Predicted splicing reg 97.8 2.8E-05 6.1E-10 86.7 6.4 83 370-456 171-256 (877)
149 KOG1548 Transcription elongati 97.7 7.2E-05 1.6E-09 77.2 7.5 77 374-455 135-219 (382)
150 KOG1995 Conserved Zn-finger pr 97.7 2.9E-05 6.4E-10 80.9 4.6 83 194-276 64-154 (351)
151 PF08777 RRM_3: RNA binding mo 97.7 6.1E-05 1.3E-09 66.9 5.9 59 374-438 2-60 (105)
152 KOG3152 TBP-binding protein, a 97.7 3.2E-05 7E-10 76.6 3.5 74 195-268 73-158 (278)
153 KOG2193 IGF-II mRNA-binding pr 97.6 2.2E-05 4.8E-10 82.4 2.1 146 277-443 2-147 (584)
154 KOG0151 Predicted splicing reg 97.5 0.00012 2.6E-09 81.8 6.4 79 195-273 173-254 (877)
155 PF11608 Limkain-b1: Limkain b 97.5 0.00029 6.3E-09 58.1 6.1 70 197-276 3-77 (90)
156 PF11608 Limkain-b1: Limkain b 97.4 0.00049 1.1E-08 56.8 6.8 61 374-444 3-68 (90)
157 KOG4849 mRNA cleavage factor I 97.3 0.00016 3.4E-09 74.4 3.7 81 192-272 76-158 (498)
158 KOG2193 IGF-II mRNA-binding pr 97.3 6.2E-05 1.3E-09 79.2 0.7 145 198-358 3-153 (584)
159 KOG2314 Translation initiation 97.3 0.00055 1.2E-08 74.9 7.4 68 374-442 59-132 (698)
160 COG5175 MOT2 Transcriptional r 97.1 0.00062 1.3E-08 69.8 5.1 102 198-299 116-243 (480)
161 KOG1855 Predicted RNA-binding 97.1 0.0026 5.6E-08 67.7 9.6 70 371-440 229-311 (484)
162 PF08777 RRM_3: RNA binding mo 97.1 0.00089 1.9E-08 59.5 5.2 59 197-261 2-60 (105)
163 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0016 3.5E-08 50.0 4.7 52 374-432 2-53 (53)
164 KOG3152 TBP-binding protein, a 96.9 0.0006 1.3E-08 67.9 2.7 71 374-444 75-157 (278)
165 KOG2416 Acinus (induces apopto 96.8 0.0036 7.8E-08 69.2 8.1 75 193-273 441-519 (718)
166 KOG4210 Nuclear localization s 96.6 0.0016 3.5E-08 68.5 3.3 78 196-274 184-262 (285)
167 KOG0115 RNA-binding protein p5 96.4 0.0042 9.1E-08 62.1 5.1 95 332-442 5-99 (275)
168 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0073 1.6E-07 46.4 5.2 52 197-255 2-53 (53)
169 COG5175 MOT2 Transcriptional r 96.4 0.0062 1.4E-07 62.7 6.0 77 372-448 113-198 (480)
170 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.011 2.3E-07 51.8 6.4 68 374-443 7-81 (100)
171 KOG2314 Translation initiation 96.2 0.0055 1.2E-07 67.3 5.2 71 194-265 56-132 (698)
172 KOG1999 RNA polymerase II tran 96.1 0.012 2.5E-07 69.1 7.4 29 236-264 208-236 (1024)
173 KOG1996 mRNA splicing factor [ 96.1 0.012 2.7E-07 59.5 6.4 58 387-444 300-358 (378)
174 KOG4676 Splicing factor, argin 96.1 0.0053 1.2E-07 64.6 3.8 68 374-442 8-78 (479)
175 KOG0921 Dosage compensation co 95.8 0.048 1E-06 63.7 10.2 21 236-256 468-488 (1282)
176 KOG0115 RNA-binding protein p5 95.7 0.014 3.1E-07 58.4 5.0 91 249-344 5-95 (275)
177 KOG2416 Acinus (induces apopto 95.5 0.0087 1.9E-07 66.2 3.0 73 371-449 442-515 (718)
178 KOG1855 Predicted RNA-binding 95.1 0.024 5.2E-07 60.7 4.6 66 195-260 230-308 (484)
179 PF05172 Nup35_RRM: Nup53/35/4 95.1 0.056 1.2E-06 47.3 6.2 71 196-268 6-83 (100)
180 KOG1996 mRNA splicing factor [ 94.7 0.056 1.2E-06 55.0 5.6 63 210-272 300-363 (378)
181 PF10446 DUF2457: Protein of u 94.7 0.016 3.5E-07 62.6 1.9 6 199-204 124-129 (458)
182 PF08952 DUF1866: Domain of un 94.6 0.076 1.6E-06 49.4 5.9 48 388-444 51-98 (146)
183 KOG2202 U2 snRNP splicing fact 94.5 0.021 4.6E-07 57.3 2.2 61 388-449 83-144 (260)
184 KOG2202 U2 snRNP splicing fact 93.9 0.02 4.3E-07 57.5 0.6 62 211-273 83-145 (260)
185 KOG2591 c-Mpl binding protein, 93.8 0.12 2.7E-06 57.1 6.3 88 248-343 147-234 (684)
186 KOG2318 Uncharacterized conser 93.6 0.66 1.4E-05 51.9 11.6 124 194-359 172-305 (650)
187 PF08675 RNA_bind: RNA binding 93.6 0.22 4.8E-06 41.5 6.0 55 375-437 10-64 (87)
188 PF10309 DUF2414: Protein of u 93.5 0.26 5.7E-06 38.9 6.1 53 374-435 6-62 (62)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 92.3 0.18 3.8E-06 49.4 4.6 74 194-267 5-84 (176)
190 PF08952 DUF1866: Domain of un 92.3 0.19 4.2E-06 46.7 4.5 69 195-272 26-103 (146)
191 KOG0921 Dosage compensation co 92.3 0.79 1.7E-05 54.1 10.2 27 712-739 1217-1243(1282)
192 PF07576 BRAP2: BRCA1-associat 91.7 1.1 2.3E-05 40.1 8.4 67 374-442 14-81 (110)
193 PF04147 Nop14: Nop14-like fam 91.7 0.19 4.1E-06 61.4 4.8 14 208-221 426-439 (840)
194 KOG2135 Proteins containing th 91.3 0.35 7.5E-06 52.8 5.6 66 372-444 371-437 (526)
195 PRK11634 ATP-dependent RNA hel 91.2 1.8 4E-05 51.2 12.2 53 384-445 498-555 (629)
196 PF04931 DNA_pol_phi: DNA poly 91.0 0.18 3.9E-06 61.4 3.7 8 212-219 740-747 (784)
197 PF10309 DUF2414: Protein of u 91.0 0.8 1.7E-05 36.2 6.0 53 198-258 7-62 (62)
198 PF08675 RNA_bind: RNA binding 89.8 1.2 2.5E-05 37.3 6.3 53 199-259 11-63 (87)
199 KOG2068 MOT2 transcription fac 89.4 0.28 6.1E-06 51.5 3.0 76 198-273 79-160 (327)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 89.2 0.48 1E-05 46.4 4.4 71 373-443 7-83 (176)
201 KOG2591 c-Mpl binding protein, 89.1 1.1 2.4E-05 49.8 7.4 57 373-436 175-233 (684)
202 KOG4285 Mitotic phosphoprotein 89.0 1.1 2.4E-05 46.3 6.8 61 374-442 198-258 (350)
203 KOG1999 RNA polymerase II tran 88.8 3.5 7.6E-05 49.3 11.6 15 381-395 447-461 (1024)
204 KOG2253 U1 snRNP complex, subu 88.8 0.33 7.2E-06 55.2 3.3 71 370-449 37-107 (668)
205 KOG2038 CAATT-binding transcri 88.3 0.45 9.8E-06 54.9 3.9 16 201-216 960-975 (988)
206 PF10567 Nab6_mRNP_bdg: RNA-re 88.2 12 0.00026 38.9 13.6 61 196-256 15-82 (309)
207 PF15023 DUF4523: Protein of u 88.2 1.2 2.7E-05 40.9 5.8 59 374-439 87-149 (166)
208 KOG2253 U1 snRNP complex, subu 88.2 0.27 5.9E-06 55.9 2.0 70 194-272 38-107 (668)
209 COG5271 MDN1 AAA ATPase contai 87.7 0.72 1.6E-05 57.9 5.2 21 416-436 4409-4429(4600)
210 KOG1924 RhoA GTPase effector D 87.5 2.8 6E-05 48.8 9.4 15 246-260 207-221 (1102)
211 KOG2135 Proteins containing th 87.3 0.27 5.9E-06 53.5 1.4 82 195-286 371-453 (526)
212 KOG4483 Uncharacterized conser 86.9 0.66 1.4E-05 49.4 3.9 56 195-257 390-446 (528)
213 KOG0804 Cytoplasmic Zn-finger 86.8 1.2 2.6E-05 48.6 5.7 68 373-442 74-142 (493)
214 KOG4574 RNA-binding protein (c 86.0 0.48 1E-05 55.2 2.4 75 375-457 300-374 (1007)
215 PF04847 Calcipressin: Calcipr 84.5 1.7 3.8E-05 42.6 5.3 53 386-444 8-62 (184)
216 KOG2318 Uncharacterized conser 83.4 4.9 0.00011 45.3 8.6 81 371-451 172-304 (650)
217 PF07576 BRAP2: BRCA1-associat 83.3 4.8 0.0001 36.0 7.1 65 199-265 16-81 (110)
218 PF05285 SDA1: SDA1; InterPro 81.8 1.1 2.3E-05 48.5 3.0 8 208-215 190-197 (324)
219 KOG2068 MOT2 transcription fac 81.0 1.1 2.4E-05 47.3 2.5 71 374-444 78-154 (327)
220 COG5271 MDN1 AAA ATPase contai 80.7 1.5 3.2E-05 55.4 3.7 20 322-341 4409-4428(4600)
221 PTZ00473 Plasmodium Vir superf 80.1 3.8 8.2E-05 44.2 6.2 18 388-405 202-219 (420)
222 KOG4285 Mitotic phosphoprotein 79.3 4.2 9E-05 42.2 5.9 70 196-273 197-267 (350)
223 PHA03169 hypothetical protein; 78.3 11 0.00024 40.3 8.8 8 293-300 303-310 (413)
224 PF04847 Calcipressin: Calcipr 77.5 2.9 6.2E-05 41.1 4.1 59 209-273 8-68 (184)
225 PF15023 DUF4523: Protein of u 77.1 4.3 9.2E-05 37.5 4.7 68 195-270 85-156 (166)
226 PF07292 NID: Nmi/IFP 35 domai 74.9 1.3 2.9E-05 37.7 0.9 57 241-297 1-73 (88)
227 PF11767 SET_assoc: Histone ly 73.9 11 0.00025 30.2 5.9 49 384-441 11-59 (66)
228 KOG0804 Cytoplasmic Zn-finger 71.8 8.1 0.00017 42.4 6.0 68 196-265 74-142 (493)
229 KOG2141 Protein involved in hi 68.0 5.3 0.00011 46.3 3.8 25 417-441 623-647 (822)
230 PF06403 Lamprin: Lamprin; In 67.9 4.7 0.0001 34.4 2.6 22 712-733 59-81 (138)
231 PF03880 DbpA: DbpA RNA bindin 67.2 23 0.0005 29.0 6.7 54 384-446 12-70 (74)
232 PTZ00473 Plasmodium Vir superf 66.9 13 0.00028 40.4 6.2 18 746-767 394-411 (420)
233 KOG4574 RNA-binding protein (c 66.8 4.8 0.0001 47.4 3.2 77 277-363 299-375 (1007)
234 PF03880 DbpA: DbpA RNA bindin 66.6 15 0.00032 30.2 5.4 59 206-273 11-74 (74)
235 PF07292 NID: Nmi/IFP 35 domai 64.7 5.8 0.00013 33.8 2.6 70 324-395 1-74 (88)
236 KOG0262 RNA polymerase I, larg 63.0 12 0.00027 46.0 5.7 17 201-217 1446-1462(1640)
237 KOG2141 Protein involved in hi 60.7 6 0.00013 45.9 2.5 15 379-393 550-564 (822)
238 KOG0262 RNA polymerase I, larg 59.2 4.4 9.6E-05 49.6 1.3 11 389-399 1541-1551(1640)
239 PF14111 DUF4283: Domain of un 59.1 11 0.00025 35.5 3.9 84 321-408 55-140 (153)
240 KOG4410 5-formyltetrahydrofola 59.0 16 0.00035 37.5 5.0 57 374-436 331-395 (396)
241 KOG2891 Surface glycoprotein [ 58.9 22 0.00049 36.3 5.9 36 372-407 148-195 (445)
242 KOG2295 C2H2 Zn-finger protein 56.6 3.7 8E-05 46.0 0.0 71 372-442 230-300 (648)
243 KOG2773 Apoptosis antagonizing 55.1 8.3 0.00018 42.4 2.4 7 382-388 390-396 (483)
244 PF11767 SET_assoc: Histone ly 54.9 28 0.00061 28.0 4.8 54 207-269 11-64 (66)
245 KOG2393 Transcription initiati 54.5 12 0.00027 42.0 3.6 14 285-298 482-495 (555)
246 COG4547 CobT Cobalamin biosynt 54.3 19 0.00042 39.7 4.9 10 262-271 425-434 (620)
247 COG1512 Beta-propeller domains 51.6 17 0.00036 38.1 3.9 14 761-774 258-271 (271)
248 PF03286 Pox_Ag35: Pox virus A 50.0 25 0.00053 34.9 4.5 11 3-13 49-59 (200)
249 PF02724 CDC45: CDC45-like pro 49.3 12 0.00025 44.5 2.6 40 293-341 372-411 (622)
250 PRK10590 ATP-dependent RNA hel 47.8 4.7E+02 0.01 29.7 22.2 17 241-257 222-238 (456)
251 PF02724 CDC45: CDC45-like pro 46.8 11 0.00023 44.7 1.8 10 292-301 338-347 (622)
252 COG5638 Uncharacterized conser 46.3 27 0.00058 37.8 4.4 35 196-230 146-185 (622)
253 KOG2266 Chromatin-associated p 44.0 13 0.00029 41.0 1.8 12 233-244 241-252 (594)
254 COG5593 Nucleic-acid-binding p 43.1 23 0.0005 39.8 3.4 20 199-218 801-820 (821)
255 PF02714 DUF221: Domain of unk 42.1 35 0.00075 36.8 4.8 56 241-298 1-56 (325)
256 KOG4019 Calcineurin-mediated s 40.9 19 0.00041 34.8 2.1 65 374-444 11-80 (193)
257 PF07530 PRE_C2HC: Associated 39.8 32 0.00069 27.9 3.0 63 211-276 2-65 (68)
258 PF09073 BUD22: BUD22; InterP 39.5 33 0.00072 38.7 4.2 15 426-440 410-424 (432)
259 KOG2295 C2H2 Zn-finger protein 39.1 12 0.00027 42.0 0.7 70 195-264 230-299 (648)
260 COG5638 Uncharacterized conser 39.1 71 0.0015 34.7 6.2 74 371-444 144-287 (622)
261 smart00596 PRE_C2HC PRE_C2HC d 38.3 32 0.00069 27.9 2.7 62 211-275 2-64 (69)
262 PF10567 Nab6_mRNP_bdg: RNA-re 35.2 93 0.002 32.6 6.1 61 372-432 14-81 (309)
263 PRK10590 ATP-dependent RNA hel 34.6 1E+02 0.0022 35.1 7.3 10 431-440 359-368 (456)
264 COG4547 CobT Cobalamin biosynt 34.5 38 0.00082 37.5 3.4 11 197-207 317-327 (620)
265 PF04094 DUF390: Protein of un 34.3 8.8E+02 0.019 29.0 15.3 17 381-397 7-23 (828)
266 PRK05901 RNA polymerase sigma 34.3 38 0.00083 38.9 3.7 12 320-331 319-330 (509)
267 KOG4483 Uncharacterized conser 33.3 71 0.0015 34.7 5.1 54 374-434 392-446 (528)
268 PF11823 DUF3343: Protein of u 33.2 1.6E+02 0.0035 23.9 6.3 61 239-301 2-63 (73)
269 KOG1295 Nonsense-mediated deca 31.8 44 0.00095 36.3 3.3 68 196-263 7-77 (376)
270 KOG4246 Predicted DNA-binding 31.3 1.1E+02 0.0024 36.5 6.5 11 372-382 144-154 (1194)
271 KOG1980 Uncharacterized conser 31.1 42 0.00092 38.7 3.2 11 278-288 528-538 (754)
272 TIGR00927 2A1904 K+-dependent 31.1 33 0.00073 41.7 2.5 7 199-205 907-913 (1096)
273 KOG4365 Uncharacterized conser 29.9 15 0.00032 40.2 -0.5 75 198-273 5-79 (572)
274 KOG4008 rRNA processing protei 29.3 28 0.00061 35.1 1.3 34 372-405 39-72 (261)
275 PF03468 XS: XS domain; Inter 29.3 43 0.00094 30.3 2.4 58 374-434 9-76 (116)
276 PF15513 DUF4651: Domain of un 27.5 1.2E+02 0.0025 24.2 4.1 19 388-406 9-27 (62)
277 KOG1295 Nonsense-mediated deca 27.4 47 0.001 36.1 2.6 74 277-351 8-82 (376)
278 PF03468 XS: XS domain; Inter 27.1 53 0.0011 29.7 2.6 49 198-249 10-67 (116)
279 KOG4410 5-formyltetrahydrofola 27.0 1.1E+02 0.0024 31.7 5.0 47 277-331 331-377 (396)
280 COG5193 LHP1 La protein, small 25.4 39 0.00085 36.8 1.6 59 374-432 175-243 (438)
281 COG0018 ArgS Arginyl-tRNA synt 24.3 4.3E+02 0.0093 31.1 10.0 99 290-409 60-166 (577)
282 KOG4213 RNA-binding protein La 23.6 89 0.0019 30.3 3.4 58 196-257 111-169 (205)
283 TIGR00927 2A1904 K+-dependent 23.0 89 0.0019 38.3 4.1 7 240-246 933-939 (1096)
284 COG2061 ACT-domain-containing 22.2 6.9E+02 0.015 23.8 11.8 64 374-438 89-154 (170)
285 KOG2891 Surface glycoprotein [ 21.8 1.3E+02 0.0027 31.1 4.3 35 276-310 149-195 (445)
286 PF14111 DUF4283: Domain of un 21.7 1.5E+02 0.0033 27.6 4.9 70 238-310 55-137 (153)
287 KOG4434 Molecular chaperone SE 21.7 47 0.001 35.6 1.4 12 318-329 450-461 (520)
288 PRK05901 RNA polymerase sigma 21.3 76 0.0016 36.5 3.0 7 387-393 388-394 (509)
289 PTZ00110 helicase; Provisional 21.0 1.4E+02 0.0031 34.8 5.4 10 747-756 51-60 (545)
290 KOG4019 Calcineurin-mediated s 21.0 40 0.00088 32.6 0.6 73 198-276 12-90 (193)
291 TIGR01651 CobT cobaltochelatas 20.9 71 0.0015 37.1 2.7 10 197-206 296-305 (600)
292 KOG4264 Nucleo-cytoplasmic pro 20.6 92 0.002 35.1 3.3 17 240-256 211-227 (694)
293 PRK14548 50S ribosomal protein 20.5 2.4E+02 0.0051 24.0 5.0 58 198-258 22-81 (84)
294 PF03985 Paf1: Paf1 ; InterPr 20.4 92 0.002 35.3 3.5 71 91-161 366-436 (436)
295 KOG0338 ATP-dependent RNA heli 20.0 80 0.0017 35.8 2.7 47 240-294 254-300 (691)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=342.09 Aligned_cols=246 Identities=33% Similarity=0.565 Sum_probs=229.6
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc-cCccccccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI-NGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~-~gr~i~V~~ 272 (775)
...+.|||+.||.++.+++|.-||.+.|+|-+++|++++.+|.++|||||.|.+++.|++||+.||++.| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5678899999999999999999999999999999999999999999999999999999999999999987 699999999
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCC
Q 004069 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (775)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~ 352 (775)
+..++.|||+|||+++++++|.+.|.+.+. .++.|.|...+.+..+++|||||+|.+...|..|-+.|-...|.+ .+.
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl-wgn 238 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL-WGN 238 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee-cCC
Confidence 999999999999999999999999999875 788999998888899999999999999999999998876666644 388
Q ss_pred CceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 353 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
.+.|.||.+........+.+.+.|||.||+.++|++.|+++|++||.|..|+.++| ||||.|.+.++|.+|+
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAM 310 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999876 9999999999999999
Q ss_pred HHhCCCccCCCcceEEE
Q 004069 433 KSINNAELGEGDNKAKV 449 (775)
Q Consensus 433 ~~l~g~~~~g~~~~~~v 449 (775)
+.|||++|.|..+.|++
T Consensus 311 ~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 311 KETNGKELDGSPIEVTL 327 (506)
T ss_pred HHhcCceecCceEEEEe
Confidence 99999999985543333
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.5e-38 Score=354.91 Aligned_cols=248 Identities=29% Similarity=0.532 Sum_probs=217.5
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCccc-CccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN-GKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~-gr~i~V~~a 273 (775)
..++|||+|||+++++++|+++|.+||.|..|+|+++ .+++++|||||+|.+.++|++||+.||+..|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 78999999999999999999999999998885 899999999
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
..+++|||+|||+.+++++|.++|.+++. .++.+.++......+++++||||+|.+.++|.+|++.|+...+.+ .++.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l-~Gr~ 213 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHV 213 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe-cCce
Confidence 99999999999999999999999999864 244444444434567889999999999999999999887655433 3788
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhcc--CCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTC 431 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 431 (775)
|.|.|+.+........+...++|||+||+..+|+++|+++|++| |.|+.|.++ ++||||+|.+.++|++|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 99999987766666666677899999999999999999999999 999999887 45999999999999999
Q ss_pred HHHhCCCccCCCcceEEEEeeccCCC
Q 004069 432 AKSINNAELGEGDNKAKVRARLSRPL 457 (775)
Q Consensus 432 ~~~l~g~~~~g~~~~~~v~~~~~~~~ 457 (775)
|+.||+..|.| ..|.+.+++|.
T Consensus 286 i~~lnG~~i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 286 MDELNGKELEG----SEIEVTLAKPV 307 (578)
T ss_pred HHHhCCCEECC----EEEEEEEccCC
Confidence 99999999987 55556666654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.4e-38 Score=349.44 Aligned_cols=244 Identities=23% Similarity=0.442 Sum_probs=214.1
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC-
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~- 274 (775)
..+|||+|||..+|+++|+++|.+||+|..|+|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -----CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceecc
Q 004069 275 -----DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (775)
Q Consensus 275 -----~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~ 349 (775)
...+|||+|||..+++++|..+|..+| .|..+.++.+. .++.+++||||+|.+.++|..|++.|++..+. +
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-g 158 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFG--QIITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-G 158 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccC--CEEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-C
Confidence 346899999999999999999999999 88888888763 46788999999999999999999999987653 2
Q ss_pred CCCCceecccCCCCCCCc--------------------------------------------------------------
Q 004069 350 VDRPAKVSFADSFIDPGD-------------------------------------------------------------- 367 (775)
Q Consensus 350 ~~~~l~v~~a~~~~~~~~-------------------------------------------------------------- 367 (775)
...++.|.|+........
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 345666666543220000
Q ss_pred -------------------------cccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEe
Q 004069 368 -------------------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTF 422 (775)
Q Consensus 368 -------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F 422 (775)
.......+|||+|||..+++++|+++|++||.|..|+|+++..|+.++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 0001123699999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCccCCC
Q 004069 423 DTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 423 ~~~~~A~~A~~~l~g~~~~g~ 443 (775)
.+.++|.+||..|||..|.|+
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr 339 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNR 339 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCe
Confidence 999999999999999999873
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.3e-35 Score=280.57 Aligned_cols=245 Identities=25% Similarity=0.453 Sum_probs=220.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..++|+|.-||..+|+++|+.+|...|+|+.|++++|+.+|++.||+||.|-.+++|++|+..||+..+..+.|+|..+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC------CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceec
Q 004069 275 DS------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLF 348 (775)
Q Consensus 275 ~~------~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~ 348 (775)
++ ..|||.+||+.+|..+|.++|.+|| .|..-+|+.+ ..+|.++|.+||.|.....|..|++.||+..- .
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fG--rIItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P-~ 195 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFG--RIITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP-S 195 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhh--hhhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCC-C
Confidence 65 5799999999999999999999999 6777777766 46799999999999999999999999998764 4
Q ss_pred cCCCCceecccCCCCCCCc----------------------------------------------------------ccc
Q 004069 349 GVDRPAKVSFADSFIDPGD----------------------------------------------------------EIM 370 (775)
Q Consensus 349 ~~~~~l~v~~a~~~~~~~~----------------------------------------------------------~~~ 370 (775)
+...+|.|.|+..+.+... ...
T Consensus 196 g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~ 275 (360)
T KOG0145|consen 196 GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGP 275 (360)
T ss_pred CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCC
Confidence 5578899999876542200 000
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
....||||-||..++++.-|+++|.+||.|..|+|++|..|.+.+||+||.+.+-++|..||..|||..+.++
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 1237999999999999999999999999999999999999999999999999999999999999999999863
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.9e-34 Score=331.91 Aligned_cols=236 Identities=25% Similarity=0.477 Sum_probs=211.7
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC--
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD-- 275 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~-- 275 (775)
+|||+|||.++|+++|.++|++||.|+.|+|+++..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999988742
Q ss_pred ------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceecc
Q 004069 276 ------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFG 349 (775)
Q Consensus 276 ------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~ 349 (775)
..+|||+||+.++++++|+++|..|| .|..|.++.+ .+++++|||||+|.+.++|.+|+..|++..+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G--~i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~~~--- 154 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFG--NILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL--- 154 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcC--CcceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhcccEe---
Confidence 35799999999999999999999999 8999999876 4678899999999999999999999998766
Q ss_pred CCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHH
Q 004069 350 VDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (775)
Q Consensus 350 ~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (775)
.++.+.|.................++|||+||+.++|+++|+++|..||.|..|.|+.+. +++++|||||+|.+.++|.
T Consensus 155 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~ 233 (562)
T TIGR01628 155 NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAA 233 (562)
T ss_pred cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHH
Confidence 377777765443332222233445789999999999999999999999999999999884 6889999999999999999
Q ss_pred HHHHHhCCCccC
Q 004069 430 TCAKSINNAELG 441 (775)
Q Consensus 430 ~A~~~l~g~~~~ 441 (775)
+|++.|||..|.
T Consensus 234 ~Av~~l~g~~i~ 245 (562)
T TIGR01628 234 KAVEEMNGKKIG 245 (562)
T ss_pred HHHHHhCCcEec
Confidence 999999999997
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.2e-32 Score=318.03 Aligned_cols=244 Identities=23% Similarity=0.432 Sum_probs=212.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC-
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS- 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a- 273 (775)
...+|||+|||.++++++|+++|+.||.|..|+|+++. +++++|||||.|.+.++|.+|+..||+..+.++.|.|...
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 34579999999999999999999999999999999874 6789999999999999999999999999999999988543
Q ss_pred ----------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcC
Q 004069 274 ----------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (775)
Q Consensus 274 ----------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~ 343 (775)
...++|||+||+..+|+++|+++|..|| .|..+.++.+ .+++++|||||+|.+.++|.+|++.|++
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--~i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG--EITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcC--CEEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 2236799999999999999999999999 8999999877 4688899999999999999999999998
Q ss_pred Cceec-cCCCCceecccCCCCCCC-------------ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCC
Q 004069 344 RDVLF-GVDRPAKVSFADSFIDPG-------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM 409 (775)
Q Consensus 344 ~~i~~-~~~~~l~v~~a~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~ 409 (775)
..+.. ..++.+.|.++....... .......++|||+||+..+|+++|+++|++||.|..|+|+.+
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d- 320 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD- 320 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-
Confidence 87631 125667777664433221 111234578999999999999999999999999999999999
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 410 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
.++.++|||||+|.+.++|.+|+..|||..|.|..
T Consensus 321 ~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 321 EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce
Confidence 68999999999999999999999999999998743
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.5e-31 Score=302.22 Aligned_cols=240 Identities=25% Similarity=0.421 Sum_probs=204.4
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....+|||+|||..+++++|+++|.+||.|..|.|+++..++.++|||||+|.+.++|.+||. |++..|.|+.|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 456789999999999999999999999999999999999999999999999999999999997 8999999999988654
Q ss_pred C------------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHH
Q 004069 274 Q------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335 (775)
Q Consensus 274 ~------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~ 335 (775)
. ..++|||+|||..+++++|+++|..|| .|..|.|+.+. .+++++|||||+|.+.++|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLHRDP-ETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcC-CCCccceEEEEEECCHHHHH
Confidence 1 136899999999999999999999999 89999998873 56789999999999999999
Q ss_pred HHHHHHcCCceeccCCCCceecccCCCCCC-----------------------------------C--------------
Q 004069 336 DAFKRLQKRDVLFGVDRPAKVSFADSFIDP-----------------------------------G-------------- 366 (775)
Q Consensus 336 ~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~-----------------------------------~-------------- 366 (775)
+|+..|++..+ .+++|.|.|+...... .
T Consensus 243 ~A~~~l~g~~i---~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
T TIGR01622 243 EALEVMNGFEL---AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKI 319 (457)
T ss_pred HHHHhcCCcEE---CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchh
Confidence 99999999666 4788888884321000 0
Q ss_pred ------------------------------------ccccccccceecCCCCCCCC----------HHHHHHHHhccCCE
Q 004069 367 ------------------------------------DEIMAQVKTVFVDGLPASWD----------EDRVRELLKNYGEI 400 (775)
Q Consensus 367 ------------------------------------~~~~~~~~~l~V~nLp~~~t----------~~~L~~~f~~~G~v 400 (775)
......+++|+|.||....+ .++|++.|.+||.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v 399 (457)
T TIGR01622 320 ALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGV 399 (457)
T ss_pred hhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCe
Confidence 00113457888999955433 36899999999999
Q ss_pred EEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 401 TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 401 ~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+.|.|... ...|++||+|.++++|+.|++.|||+.|.|..
T Consensus 400 ~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~ 439 (457)
T TIGR01622 400 VHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKM 439 (457)
T ss_pred eEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeE
Confidence 99999743 45799999999999999999999999999833
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=2e-31 Score=280.99 Aligned_cols=233 Identities=27% Similarity=0.459 Sum_probs=205.8
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
..||||++||+.++.++|.++|+.+|+|..|.++++..++.++||+||.|.=.++++.||+.+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999987611
Q ss_pred --------------------------------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccce
Q 004069 276 --------------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGF 323 (775)
Q Consensus 276 --------------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~ 323 (775)
.-.|+|.||||.|.+.+|+.+|..|| .++.|.|... ..++-.||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G--~V~Ei~IP~k--~dgklcGF 160 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG--KVVEIVIPRK--KDGKLCGF 160 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc--eEEEEEcccC--CCCCccce
Confidence 24699999999999999999999999 8999998743 44544599
Q ss_pred EEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCC--------------------------------------
Q 004069 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP-------------------------------------- 365 (775)
Q Consensus 324 afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~-------------------------------------- 365 (775)
|||+|....+|..|++.+|++.| .++++-|.||-....-
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i---~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~ 237 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKI---DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEE 237 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCcee---cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccc
Confidence 99999999999999999999988 4999999996221100
Q ss_pred -----C--c----------------------------------------cccccccceecCCCCCCCCHHHHHHHHhccC
Q 004069 366 -----G--D----------------------------------------EIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398 (775)
Q Consensus 366 -----~--~----------------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G 398 (775)
. + .......+|||.|||+++|++.|.++|++||
T Consensus 238 d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG 317 (678)
T KOG0127|consen 238 DSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG 317 (678)
T ss_pred cccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc
Confidence 0 0 0000116899999999999999999999999
Q ss_pred CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 004069 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (775)
Q Consensus 399 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 435 (775)
.|..+.|+.++.|+.++|.|||.|.+..+|+.||...
T Consensus 318 ~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 318 EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999976
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.1e-30 Score=296.43 Aligned_cols=230 Identities=23% Similarity=0.242 Sum_probs=191.0
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhh--cCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL--KNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l--~~~~~~gr~i~V~~a 273 (775)
+.+|||+|||+.+++++|+++|++||.|..|.|++ .++||||+|.+.++|.+||+.| ++..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 46799999999999999999999999999999985 3689999999999999999975 678899999999776
Q ss_pred CCC------------------CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHH
Q 004069 274 QDS------------------DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAM 335 (775)
Q Consensus 274 ~~~------------------~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~ 335 (775)
... .+|+|.||+..+++++|.++|..|| .|..|.++++. ..++|||+|.+.++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G--~V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYG--KVLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccC--CEEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 211 2589999999999999999999999 89999887652 1468999999999999
Q ss_pred HHHHHHcCCceeccCCCCceecccCCCC--------C------------C-----------C------------------
Q 004069 336 DAFKRLQKRDVLFGVDRPAKVSFADSFI--------D------------P-----------G------------------ 366 (775)
Q Consensus 336 ~Al~~l~~~~i~~~~~~~l~v~~a~~~~--------~------------~-----------~------------------ 366 (775)
+|++.||+..+.-+ +..++|.|+.... . . .
T Consensus 149 ~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 149 HAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999887422 2344444432100 0 0 0
Q ss_pred -----------------------------------------ccccccccceecCCCCC-CCCHHHHHHHHhccCCEEEEE
Q 004069 367 -----------------------------------------DEIMAQVKTVFVDGLPA-SWDEDRVRELLKNYGEITKIE 404 (775)
Q Consensus 367 -----------------------------------------~~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~ 404 (775)
.....+.++|||+||++ .+|+++|+++|+.||.|..|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 00012457999999998 699999999999999999999
Q ss_pred EecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 405 LARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 405 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
|+++. +|||||+|.+.++|..||..|||..|.|..
T Consensus 308 i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 308 FMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred EEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 99873 799999999999999999999999998733
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=1.3e-30 Score=300.50 Aligned_cols=240 Identities=23% Similarity=0.358 Sum_probs=194.3
Q ss_pred hccCccEEEEcCCCCCCcHHHHHhhcccc------------CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc
Q 004069 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQV------------GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (775)
Q Consensus 192 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~------------G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (775)
......+|||+|||+.+|+++|.++|.++ +.|..+.+ +..++||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34456789999999999999999999975 23333333 3458999999999999999995 99
Q ss_pred CCcccCccccccCC-----------------------------------CCCCcccccCccccccHHHHHHHHhhcCCCc
Q 004069 260 NPVINGKQCGVTPS-----------------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDN 304 (775)
Q Consensus 260 ~~~~~gr~i~V~~a-----------------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~ 304 (775)
+..|.|+.|.|... ...++|||+|||..+++++|+++|+.|| .
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G--~ 321 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG--D 321 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--C
Confidence 99999999988532 1135799999999999999999999999 8
Q ss_pred eeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCCC-----c------------
Q 004069 305 VEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG-----D------------ 367 (775)
Q Consensus 305 i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~-----~------------ 367 (775)
|..+.|+.+ ..+|.++|||||+|.+.++|..|+..|++..+ .++.|.|.++....... .
T Consensus 322 i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T TIGR01642 322 LKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL 397 (509)
T ss_pred eeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEECccCCCCCCccccccccccccccccc
Confidence 999998877 36789999999999999999999999999877 37778887764221100 0
Q ss_pred ------cccccccceecCCCCCCC----------CHHHHHHHHhccCCEEEEEEecCC---CCCCcccEEEEEeCCHHHH
Q 004069 368 ------EIMAQVKTVFVDGLPASW----------DEDRVRELLKNYGEITKIELARNM---PSAKRKDFGFVTFDTHDAA 428 (775)
Q Consensus 368 ------~~~~~~~~l~V~nLp~~~----------t~~~L~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A 428 (775)
....++.+|+|.||.... ..++|+++|.+||.|+.|.|+++. .++...|+|||+|.+.++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 001245788999996421 236899999999999999998753 3456689999999999999
Q ss_pred HHHHHHhCCCccCCCc
Q 004069 429 VTCAKSINNAELGEGD 444 (775)
Q Consensus 429 ~~A~~~l~g~~~~g~~ 444 (775)
++||..|||..|.|..
T Consensus 478 ~~A~~~lnGr~~~gr~ 493 (509)
T TIGR01642 478 EKAMEGMNGRKFNDRV 493 (509)
T ss_pred HHHHHHcCCCEECCeE
Confidence 9999999999998733
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=8.2e-30 Score=289.25 Aligned_cols=243 Identities=19% Similarity=0.292 Sum_probs=198.7
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCc--cccccCC-
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK--QCGVTPS- 273 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr--~i~V~~a- 273 (775)
.+|||.||++.+|+++|+++|+.||.|+.|.|+++.. .++|||+|.+.++|.+|+..||+..|.+. .|.|.++
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 4699999999999999999999999999999987532 46899999999999999999999988542 2222111
Q ss_pred --------------------------------------------------------------------------------
Q 004069 274 -------------------------------------------------------------------------------- 273 (775)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (775)
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence
Q ss_pred --------------------CCCCcccccCccc-cccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHH
Q 004069 274 --------------------QDSDTLFLGNICK-TWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRS 332 (775)
Q Consensus 274 --------------------~~~~~l~V~nLp~-~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e 332 (775)
..+++|||+||+. .+|+++|+++|..|| .|..|+|+.+. ++||||+|.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~------~g~afV~f~~~~ 324 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK------KETALIEMADPY 324 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC------CCEEEEEECCHH
Confidence 1235899999997 699999999999999 89999998763 699999999999
Q ss_pred HHHHHHHHHcCCceeccCCCCceecccCCCCCCC--------------------------------ccccccccceecCC
Q 004069 333 DAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG--------------------------------DEIMAQVKTVFVDG 380 (775)
Q Consensus 333 ~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~--------------------------------~~~~~~~~~l~V~n 380 (775)
+|..|+..|++..+ .+++|.|.++....... ..+..++.+|||+|
T Consensus 325 ~A~~Ai~~lng~~l---~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~N 401 (481)
T TIGR01649 325 QAQLALTHLNGVKL---FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSN 401 (481)
T ss_pred HHHHHHHHhCCCEE---CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEec
Confidence 99999999999877 48889888764321000 00112457899999
Q ss_pred CCCCCCHHHHHHHHhccCC--EEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc--ceEEEEeeccCC
Q 004069 381 LPASWDEDRVRELLKNYGE--ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD--NKAKVRARLSRP 456 (775)
Q Consensus 381 Lp~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~--~~~~v~~~~~~~ 456 (775)
||..+|+++|+++|+.||. |..|+|.... + ..+++|||+|.+.++|.+||..|||..|.+.. ....|++.++++
T Consensus 402 Lp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 402 IPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 9999999999999999998 8888886543 2 25789999999999999999999999998743 334566777665
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=265.95 Aligned_cols=248 Identities=25% Similarity=0.490 Sum_probs=218.5
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCC-cccCc--cccccC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VINGK--QCGVTP 272 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~-~~~gr--~i~V~~ 272 (775)
..+|||+.||..|+|.+|+.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||+. +|.|- .|.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 345999999999999999999999999999999999999999999999999999999999999875 45554 555666
Q ss_pred C-------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCc
Q 004069 273 S-------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRD 345 (775)
Q Consensus 273 a-------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~ 345 (775)
+ ...++|||+-|++.+|+.+|+.+|.+|| .|++|.|+++ ..+.++|||||.|.+.+.|..|++.||+..
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG--~Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFG--HIEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhC--ccchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 5 2357899999999999999999999999 8999999988 578999999999999999999999999999
Q ss_pred eeccCCCCceecccCCCCCCC-----------------------------------------------------------
Q 004069 346 VLFGVDRPAKVSFADSFIDPG----------------------------------------------------------- 366 (775)
Q Consensus 346 i~~~~~~~l~v~~a~~~~~~~----------------------------------------------------------- 366 (775)
.+.+...+|.|.|++......
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 999999999999975543110
Q ss_pred -------------------------cc-----------------------------------------------------
Q 004069 367 -------------------------DE----------------------------------------------------- 368 (775)
Q Consensus 367 -------------------------~~----------------------------------------------------- 368 (775)
..
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 00
Q ss_pred ----------------------------------------------------------------------ccccccceec
Q 004069 369 ----------------------------------------------------------------------IMAQVKTVFV 378 (775)
Q Consensus 369 ----------------------------------------------------------------------~~~~~~~l~V 378 (775)
.......|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 0000137999
Q ss_pred CCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 379 DGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 379 ~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
.+||.+.-+.+|-..|..||.|+..++..++.|+.++.|+||.|++..+|..||..|||..|+....++
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkV 498 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKV 498 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceE
Confidence 999999999999999999999999999999999999999999999999999999999999998755333
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=2e-28 Score=262.89 Aligned_cols=170 Identities=22% Similarity=0.397 Sum_probs=150.8
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
...++|||+|||+++|+++|+++|..+| .|+.|+|+.+ ..++++++||||+|.+.++|.+|++.|++..+ .+++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G--~V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---~gr~ 178 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIG--PINTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---RNKR 178 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---CCce
Confidence 4567999999999999999999999999 8999999988 46889999999999999999999999999877 4889
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
|+|.++...... ...++|||+|||..+|+++|+++|++||.|+.|.|+++..+++++|||||+|.+.++|++||+
T Consensus 179 i~V~~a~p~~~~-----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 179 LKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeeecccccccc-----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 999988653221 234789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEeecc
Q 004069 434 SINNAELGEGDNKAKVRARLS 454 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~ 454 (775)
.||+..|.++...+.|+++..
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HhCCCccCCCceeEEEEECCc
Confidence 999999987665566655443
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.8e-28 Score=236.32 Aligned_cols=222 Identities=23% Similarity=0.463 Sum_probs=180.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..+||||+||..++|++-|..||.+.|.|+.++|+.+.. -|...+.. ..+.+... .
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~--------~v~wa~~p-------~nQsk~t~---------~ 60 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL--------KVNWATAP-------GNQSKPTS---------N 60 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh--------ccccccCc-------ccCCCCcc---------c
Confidence 457899999999999999999999999999999987621 00000000 00000000 1
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
..-.|||+.|...++-++|++.|.+|| .|.+++|++| .+|++++||+||.|-+.++|+.|+..|++.=| ..+.|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFG--evS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~I 134 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFG--EVSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTI 134 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhcccc--ccccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCeee---cccee
Confidence 122689999999999999999999999 9999999999 58999999999999999999999999999765 48889
Q ss_pred eecccCCCCCCC-----------ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeC
Q 004069 355 KVSFADSFIDPG-----------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD 423 (775)
Q Consensus 355 ~v~~a~~~~~~~-----------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 423 (775)
+..|+....... .......++|||+||+..+|+++|++.|+.||.|..|+|.++ +|||||.|.
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEec
Confidence 999986554221 122345689999999999999999999999999999999988 899999999
Q ss_pred CHHHHHHHHHHhCCCccCCCcceEEEEeeccCC
Q 004069 424 THDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 424 ~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
+.++|..||..|||++|.|+. |+..|.+.
T Consensus 209 tkEaAahAIv~mNntei~G~~----VkCsWGKe 237 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQL----VRCSWGKE 237 (321)
T ss_pred chhhHHHHHHHhcCceeCceE----EEEecccc
Confidence 999999999999999999844 45555543
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=2.1e-27 Score=267.08 Aligned_cols=159 Identities=18% Similarity=0.425 Sum_probs=142.5
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+||++.+++++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred C-----------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHH
Q 004069 274 Q-----------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMD 336 (775)
Q Consensus 274 ~-----------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~ 336 (775)
. ..++|||+||+..+++++|+++|+.|| .|..+.|+.+. .+++++|||||+|.+.++|.+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D~-~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP-TGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEecC-CCCCcCCeEEEEECCHHHHHH
Confidence 2 236899999999999999999999999 89999999874 578899999999999999999
Q ss_pred HHHHHcCCceeccCCCCceecc
Q 004069 337 AFKRLQKRDVLFGVDRPAKVSF 358 (775)
Q Consensus 337 Al~~l~~~~i~~~~~~~l~v~~ 358 (775)
|+..||+..+ .++.|+|.+
T Consensus 262 AI~amNg~el---gGr~LrV~k 280 (612)
T TIGR01645 262 AIASMNLFDL---GGQYLRVGK 280 (612)
T ss_pred HHHHhCCCee---CCeEEEEEe
Confidence 9999997765 244444433
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.6e-25 Score=239.90 Aligned_cols=229 Identities=25% Similarity=0.475 Sum_probs=203.8
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC-CC
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-DS 276 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~-~~ 276 (775)
.|||+ +++|+..|.++|+.+|+|+.|+|+++. + +.|||||.|.++++|.+||..+|...+.|+.|+|.|+. +.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58888 999999999999999999999999998 6 99999999999999999999999999999999999995 34
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCcee
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
..|||.||+..++...|.++|..|| +|++|+++.+.+. ++|| ||+|.+.+.|.+|+..+|+..+ .++.+.|
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g--~ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~ll---~~kki~v 147 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFG--NILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGMLL---NGKKIYV 147 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhc--CeeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCccc---CCCeeEE
Confidence 5599999999999999999999999 9999999988543 8999 9999999999999999998766 4777777
Q ss_pred cccCCCCCCC---ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 357 SFADSFIDPG---DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 357 ~~a~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
.......... ......-+.++|.|++.++++..|..+|..+|.|..+.|+.+. .+++++|+||.|.++++|..|+.
T Consensus 148 g~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred eeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHH
Confidence 6654433221 1133455789999999999999999999999999999999885 45699999999999999999999
Q ss_pred HhCCCccCC
Q 004069 434 SINNAELGE 442 (775)
Q Consensus 434 ~l~g~~~~g 442 (775)
.||+..+.+
T Consensus 227 ~l~~~~~~~ 235 (369)
T KOG0123|consen 227 TLNGKIFGD 235 (369)
T ss_pred hccCCcCCc
Confidence 999999974
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.93 E-value=1.6e-25 Score=240.36 Aligned_cols=164 Identities=24% Similarity=0.444 Sum_probs=149.5
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+++|+++|+++|.+||.|+.|+|+++..+++++|||||+|.+.++|++||+.|++..|.++.|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCcee
Q 004069 274 Q------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (775)
Q Consensus 274 ~------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~ 347 (775)
. ..++|||.|||..+|+++|+++|.+|| .|..|.|+.+ +.++++++||||+|.+.++|.+|++.|++..+.
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4 356899999999999999999999999 8999999877 468899999999999999999999999987653
Q ss_pred ccCCCCceecccCC
Q 004069 348 FGVDRPAKVSFADS 361 (775)
Q Consensus 348 ~~~~~~l~v~~a~~ 361 (775)
+..++|.|.++..
T Consensus 262 -g~~~~l~V~~a~~ 274 (346)
T TIGR01659 262 -GGSQPLTVRLAEE 274 (346)
T ss_pred -CCceeEEEEECCc
Confidence 2356788887765
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.4e-24 Score=234.29 Aligned_cols=235 Identities=25% Similarity=0.471 Sum_probs=205.2
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC---
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ--- 274 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~--- 274 (775)
.|||.||+.+++...|..+|+.||.|+.|++.++.+ | ++|| ||+|.+.+.|.+|+..||+..+.++.|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999854 4 9999 999999999999999999999999999996542
Q ss_pred -----------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcC
Q 004069 275 -----------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (775)
Q Consensus 275 -----------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~ 343 (775)
.-+.++|.|++.+.++..|..+|..+| .|..+.++.+ ..+++++|+||+|.+.++|..|+..|++
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g--~i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYG--SITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccC--cceEEEEeec--CCCCCCCccceeecChhHHHHHHHhccC
Confidence 236789999999999999999999999 8999999977 4677999999999999999999999998
Q ss_pred CceeccCCCCceecccCCCCCC-------------CccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCC
Q 004069 344 RDVLFGVDRPAKVSFADSFIDP-------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMP 410 (775)
Q Consensus 344 ~~i~~~~~~~l~v~~a~~~~~~-------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~ 410 (775)
..+. +..+.|..+...... ..........|||.||...++.+.|+.+|+.||.|..++|+.+ .
T Consensus 231 ~~~~---~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~ 306 (369)
T KOG0123|consen 231 KIFG---DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-E 306 (369)
T ss_pred CcCC---ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEec-c
Confidence 8763 455555554432211 1222345678999999999999999999999999999999987 4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 411 SAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 411 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
.++++||+||+|.+.++|..|+..+|+..+.+.
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k 339 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGK 339 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCC
Confidence 689999999999999999999999999999863
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.4e-24 Score=227.71 Aligned_cols=237 Identities=23% Similarity=0.387 Sum_probs=188.4
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
....|+|+||||.+...+|+.+|++||.|..|.|.+....+. .|||||+|....+|..||+.+|++.|.|+.|-|.|+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 366799999999999999999999999999999998766554 4999999999999999999999999999999998870
Q ss_pred C-------------------------------------------------------------------------------
Q 004069 275 D------------------------------------------------------------------------------- 275 (775)
Q Consensus 275 ~------------------------------------------------------------------------------- 275 (775)
+
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 0
Q ss_pred -----------------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHH
Q 004069 276 -----------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (775)
Q Consensus 276 -----------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al 338 (775)
..+|||.|||+++|+++|.++|.+|| .|..+.|+.+ ..+++++|+|||.|.+..+|..||
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--~v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--EVKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc--cceeEEEEec-cCCCCcccceEEEeccHHHHHHHH
Confidence 05799999999999999999999999 7777777776 579999999999999999999999
Q ss_pred HHH---cCCceeccCCCCceecccCCCCCC--------------------------------------------------
Q 004069 339 KRL---QKRDVLFGVDRPAKVSFADSFIDP-------------------------------------------------- 365 (775)
Q Consensus 339 ~~l---~~~~i~~~~~~~l~v~~a~~~~~~-------------------------------------------------- 365 (775)
... ++..-.+-.++.|.|..+-.....
T Consensus 352 ~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~ 431 (678)
T KOG0127|consen 352 EAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAER 431 (678)
T ss_pred HhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHH
Confidence 865 222212234777777765221100
Q ss_pred ------CccccccccceecCCCCCCCCHHHHHHHHhcc-----CCEE-EEEEecC---CCCCCcccEEEEEeCCHHHHHH
Q 004069 366 ------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNY-----GEIT-KIELARN---MPSAKRKDFGFVTFDTHDAAVT 430 (775)
Q Consensus 366 ------~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~-----G~v~-~v~i~~~---~~~g~~~g~afV~F~~~~~A~~ 430 (775)
++.+....++|.|.|||..++...|..|+... +.|. .|+.+.. ...+.+.||+||.|..++.|.+
T Consensus 432 k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalk 511 (678)
T KOG0127|consen 432 KRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALK 511 (678)
T ss_pred HHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHH
Confidence 11222234789999999999999999888542 2332 2233222 2236779999999999999999
Q ss_pred HHHHh
Q 004069 431 CAKSI 435 (775)
Q Consensus 431 A~~~l 435 (775)
|+..+
T Consensus 512 alk~~ 516 (678)
T KOG0127|consen 512 ALKVL 516 (678)
T ss_pred hhhcc
Confidence 98866
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=2.2e-23 Score=234.75 Aligned_cols=172 Identities=19% Similarity=0.389 Sum_probs=147.1
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
..++|||+||++.+++++|+++|..|| .|..|.++.+ ..+++++|||||+|.+.++|..|++.|++..+ .++.|
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG--~I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---~GR~I 179 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNI 179 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccC--CEEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---eccee
Confidence 346899999999999999999999999 8999999887 46889999999999999999999999998777 48888
Q ss_pred eecccCCCCCCC------ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHH
Q 004069 355 KVSFADSFIDPG------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAA 428 (775)
Q Consensus 355 ~v~~a~~~~~~~------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 428 (775)
.|.+........ .......++|||+||+..+++++|+++|+.||.|..|.|+++..+++++|||||+|.+.++|
T Consensus 180 kV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 180 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred eecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 888754432211 11112347899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCCcceEEEEeecc
Q 004069 429 VTCAKSINNAELGEGDNKAKVRARLS 454 (775)
Q Consensus 429 ~~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (775)
.+||..||+..|+|. .+.|.....
T Consensus 260 ~kAI~amNg~elgGr--~LrV~kAi~ 283 (612)
T TIGR01645 260 SEAIASMNLFDLGGQ--YLRVGKCVT 283 (612)
T ss_pred HHHHHHhCCCeeCCe--EEEEEecCC
Confidence 999999999999873 344444443
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=3.7e-23 Score=226.24 Aligned_cols=244 Identities=20% Similarity=0.305 Sum_probs=196.6
Q ss_pred hccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 192 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
..+..+.|+|+|||..+..+.|..+|..||.|..|.|... -..|+|.|.++.+|.+|+..|....+....+.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 3345678999999999999999999999999999965411 1249999999999999999998765544444332
Q ss_pred CC--------------------------------------------------------CCCCcccccCccccccHHHHHH
Q 004069 272 PS--------------------------------------------------------QDSDTLFLGNICKTWTKEALKE 295 (775)
Q Consensus 272 ~a--------------------------------------------------------~~~~~l~V~nLp~~~te~~L~~ 295 (775)
|+ ...++|||.||++..|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 22 0113499999999999999999
Q ss_pred HHhhcCCCceeeeEEeecCCC--CCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCCC----ccc
Q 004069 296 KLKHYGVDNVEDLTLVEDSNN--EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG----DEI 369 (775)
Q Consensus 296 ~F~~~G~~~i~~i~l~~d~~~--~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~----~~~ 369 (775)
+|...| .|..|.|...... .-.+.|||||+|.+.++|..|++.|+++.+ .++.+.+.++....... ...
T Consensus 535 ~F~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~lk~S~~k~~~~~gK~~~~ 609 (725)
T KOG0110|consen 535 LFSKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLELKISENKPASTVGKKKSK 609 (725)
T ss_pred HHHhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEEEEeccCcccccccccccc
Confidence 999999 6777766544322 335679999999999999999999998877 59999999887222111 111
Q ss_pred cccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 004069 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (775)
....+.|+|.|||+..+..+|+.+|..||.|..|+|+.....+..+|||||+|-+..+|..|+.+|..+.|.|+...
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 12347899999999999999999999999999999998866677899999999999999999999999999985433
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=7.9e-23 Score=224.59 Aligned_cols=166 Identities=22% Similarity=0.411 Sum_probs=147.4
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
..++|||+|||..+++++|+++|..+| .|..|+|+.+ +.+++++|||||+|.+.++|.+|+..|++..+ .++.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---~g~~i 75 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIG--EIESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---QNKTI 75 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccC--CEEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccEEE---CCeeE
Confidence 356899999999999999999999999 8999999988 45789999999999999999999999999776 48999
Q ss_pred eecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 004069 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (775)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (775)
.|.|+.+.... ...++|||+|||..+++++|+.+|.+||.|..+.|+.+..++.++|||||+|.+.++|+.||..
T Consensus 76 ~v~~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 76 KVSYARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred EEEeecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 99998654332 2347899999999999999999999999999999999988899999999999999999999999
Q ss_pred hCCCccCCCcceEEEEe
Q 004069 435 INNAELGEGDNKAKVRA 451 (775)
Q Consensus 435 l~g~~~~g~~~~~~v~~ 451 (775)
|||..+.+....+.|..
T Consensus 151 l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 151 LNGTTPSGCTEPITVKF 167 (352)
T ss_pred hCCCccCCCceeEEEEE
Confidence 99999987554444443
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.6e-23 Score=214.58 Aligned_cols=173 Identities=25% Similarity=0.487 Sum_probs=152.9
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCcee
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
-+|||+.||..|++.+|+.+|++|| .|.+|.|++| +.++.++|||||.|.+.++|.+|+.+||+...+.+...++.|
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg--~V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYG--NVYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhC--ceeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4799999999999999999999999 8999999999 678999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 004069 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (775)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (775)
.+++.....- ...++|||+-|+..+|+.+|+.+|.+||.|++|.|+++. .+.++|||||+|.+.+-|..||+.||
T Consensus 112 k~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 112 KYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred cccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhc
Confidence 9998755442 234899999999999999999999999999999999995 68999999999999999999999999
Q ss_pred CCcc-CCCcceEEEEeeccCCCCC
Q 004069 437 NAEL-GEGDNKAKVRARLSRPLQR 459 (775)
Q Consensus 437 g~~~-~g~~~~~~v~~~~~~~~~~ 459 (775)
|..- .|.. ..+.+.|+.+.+.
T Consensus 187 g~~tmeGcs--~PLVVkFADtqkd 208 (510)
T KOG0144|consen 187 GTQTMEGCS--QPLVVKFADTQKD 208 (510)
T ss_pred cceeeccCC--CceEEEecccCCC
Confidence 9764 4434 4445555555444
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.88 E-value=1.4e-22 Score=216.33 Aligned_cols=244 Identities=24% Similarity=0.375 Sum_probs=198.6
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
+...|||+-.|...++.-+|.+||+.+|+|..|.||.+..++.++|.|||+|.+.+....||. |.|..+.|..|.|..+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 456789999999999999999999999999999999999999999999999999999999996 9999999999999765
Q ss_pred C--------------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHH
Q 004069 274 Q--------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333 (775)
Q Consensus 274 ~--------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~ 333 (775)
. +...|||+||.+++++.+|+.+|+.|| .|..|.++.+. .+|.++||+||+|.+.++
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l~~d~-~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG--KIENVQLTKDS-ETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcc--cceeeeecccc-ccccccCcceEEEecHHH
Confidence 1 123489999999999999999999999 88888888773 589999999999999999
Q ss_pred HHHHHHHHcCCceeccCCCCceecccCCCCCC------------------------------------------------
Q 004069 334 AMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP------------------------------------------------ 365 (775)
Q Consensus 334 A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~------------------------------------------------ 365 (775)
|++|+..||+-.+ .|+.|+|.........
T Consensus 333 ar~a~e~lngfel---AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l 409 (549)
T KOG0147|consen 333 ARKALEQLNGFEL---AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISAL 409 (549)
T ss_pred HHHHHHHhcccee---cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHH
Confidence 9999999999443 3666655432100000
Q ss_pred -------------------Ccccc-------ccccceecCCCCCC--CC--------HHHHHHHHhccCCEEEEEEecCC
Q 004069 366 -------------------GDEIM-------AQVKTVFVDGLPAS--WD--------EDRVRELLKNYGEITKIELARNM 409 (775)
Q Consensus 366 -------------------~~~~~-------~~~~~l~V~nLp~~--~t--------~~~L~~~f~~~G~v~~v~i~~~~ 409 (775)
..... .++.|+.|.|+=.. .| .++|.+.+.+||.|..|.|..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n- 488 (549)
T KOG0147|consen 410 LLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN- 488 (549)
T ss_pred HhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-
Confidence 00001 23456777776322 11 2688999999999988888765
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 410 PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 410 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
+-||.||.|.+.++|..|+.+|||.+|.|..+++++
T Consensus 489 ----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~ 524 (549)
T KOG0147|consen 489 ----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKY 524 (549)
T ss_pred ----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEE
Confidence 349999999999999999999999999986655544
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=9.6e-22 Score=223.64 Aligned_cols=163 Identities=22% Similarity=0.413 Sum_probs=140.6
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
...++|||+|||..+++++|+++|.++| .|..|.|+.+ ..+++++|||||+|.+.++|.+||. |++..+ .+++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---~g~~ 159 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVG--KVRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQML---LGRP 159 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---CCee
Confidence 3456899999999999999999999999 8999999987 4678999999999999999999996 777766 3788
Q ss_pred ceecccCCCCCCC-------ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHH
Q 004069 354 AKVSFADSFIDPG-------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHD 426 (775)
Q Consensus 354 l~v~~a~~~~~~~-------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 426 (775)
|.|.++....... .......++|||+|||..+|+++|+++|++||.|..|.|+.+..+|+++|||||+|.+.+
T Consensus 160 i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 8877654322111 111123589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCC
Q 004069 427 AAVTCAKSINNAELGEG 443 (775)
Q Consensus 427 ~A~~A~~~l~g~~~~g~ 443 (775)
+|.+|+..|||..|.|.
T Consensus 240 ~A~~A~~~l~g~~i~g~ 256 (457)
T TIGR01622 240 EAKEALEVMNGFELAGR 256 (457)
T ss_pred HHHHHHHhcCCcEECCE
Confidence 99999999999999873
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.9e-22 Score=192.46 Aligned_cols=154 Identities=23% Similarity=0.561 Sum_probs=145.3
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC--
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a-- 273 (775)
.+-|||+.|...++.++|++.|.+||+|.+++|++|.+|++++||+||.|.++++|+.||..||+.=|.+|.|+..|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 556999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --------------------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHH
Q 004069 274 --------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSD 333 (775)
Q Consensus 274 --------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~ 333 (775)
.++++|||+||+..+|++.|++.|..|| .|.+|+++++ +||+||.|.+.+.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~I~EVRvFk~-------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--PIQEVRVFKD-------QGYAFVRFETKEA 212 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC--cceEEEEecc-------cceEEEEecchhh
Confidence 3568999999999999999999999999 8999999988 9999999999999
Q ss_pred HHHHHHHHcCCceeccCCCCceecccCC
Q 004069 334 AMDAFKRLQKRDVLFGVDRPAKVSFADS 361 (775)
Q Consensus 334 A~~Al~~l~~~~i~~~~~~~l~v~~a~~ 361 (775)
|..|+..+|+.+| .+..+++.|-+.
T Consensus 213 AahAIv~mNntei---~G~~VkCsWGKe 237 (321)
T KOG0148|consen 213 AAHAIVQMNNTEI---GGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHHhcCcee---CceEEEEecccc
Confidence 9999999999998 488888887654
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=4.4e-21 Score=193.49 Aligned_cols=146 Identities=18% Similarity=0.460 Sum_probs=134.7
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC-
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~- 274 (775)
-+.|||+.|.+.+.++.|+..|..||+|..|.+-.|+.|++.+|||||+|.-++.|..|++.+|+.++.|+.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999997552
Q ss_pred ----------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHH
Q 004069 275 ----------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (775)
Q Consensus 275 ----------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al 338 (775)
.-++|||..+..+..+++|+..|+.|| .|..|.|.+.+ ..+.++||+||+|.+.+....|+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccC-CCCCccceeeEEeccccchHHHh
Confidence 237899999999999999999999999 99999999884 46788999999999999999998
Q ss_pred HHHcCC
Q 004069 339 KRLQKR 344 (775)
Q Consensus 339 ~~l~~~ 344 (775)
..+|--
T Consensus 270 asMNlF 275 (544)
T KOG0124|consen 270 ASMNLF 275 (544)
T ss_pred hhcchh
Confidence 876643
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.86 E-value=1.8e-20 Score=193.18 Aligned_cols=142 Identities=27% Similarity=0.457 Sum_probs=124.2
Q ss_pred cEEEEcCCCCCCcHHHHHhhcc-ccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC-
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFS-QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ- 274 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~-~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~- 274 (775)
+.+||.|||+++..++|+.||. +.|.|+.|.++.| .+++.+|+|.|+|+++|.+++|++.||.+.+.|+.|.|+...
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 3499999999999999999996 5799999999998 569999999999999999999999999999999999885330
Q ss_pred --------------------------------------------------------------------------------
Q 004069 275 -------------------------------------------------------------------------------- 274 (775)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (775)
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence
Q ss_pred ----------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcC
Q 004069 275 ----------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (775)
Q Consensus 275 ----------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~ 343 (775)
...++||.||...+....|++.|.-.| .++.|.+--+ +.+++++|+.++|...-.|.+|+..|..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--kv~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--KVQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccce--eeeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 015688999999999999999999999 5777766544 4678899999999999999999988774
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=1.1e-20 Score=213.09 Aligned_cols=174 Identities=22% Similarity=0.348 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhcCCcccCccccccCC-----------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCC
Q 004069 248 VEQARQAVTELKNPVINGKQCGVTPS-----------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNN 316 (775)
Q Consensus 248 ~e~A~~Al~~l~~~~~~gr~i~V~~a-----------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~ 316 (775)
.++|.+||..+++..+.......... ...++|||+|||+++++++|.++|.++| .|..|+|+.+ .
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G--~I~~vrl~~D--~ 94 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAG--PIYELRLMMD--F 94 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhC--CEEEEEEEEC--C
Confidence 57888888888876654433322221 2347899999999999999999999999 8999999988 5
Q ss_pred CCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhc
Q 004069 317 EGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKN 396 (775)
Q Consensus 317 ~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~ 396 (775)
++++++||||+|.+.++|.+|++.|++..+. .++.+.|.++. ..++|||+|||.++|+++|.++|.+
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~--~Gr~l~V~~S~-----------~~~rLFVgNLP~~~TeeeL~eeFsk 161 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR--PGRLLGVCISV-----------DNCRLFVGGIPKNKKREEILEEFSK 161 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCeec--CCccccccccc-----------cCceeEeecCCcchhhHHHHHHhhc
Confidence 7899999999999999999999999988764 34556555432 2488999999999999999999999
Q ss_pred cCC-EEEEEEe-cCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 004069 397 YGE-ITKIELA-RNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438 (775)
Q Consensus 397 ~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 438 (775)
++. |+.+.|. ....+++++|||||+|.++++|..|++.|+..
T Consensus 162 v~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 162 VTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred ccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 964 4444443 33345788999999999999999999988754
No 30
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=186.35 Aligned_cols=179 Identities=21% Similarity=0.435 Sum_probs=147.6
Q ss_pred cccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceec
Q 004069 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVS 357 (775)
Q Consensus 278 ~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~ 357 (775)
+|||+|||.+++.++|+.+|++|| +|.+|.|+ ++|+||+.++...|..|+..|++.++ .+..|+|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~yg--kVlECDIv---------KNYgFVHiEdktaaedairNLhgYtL---hg~nInVe 69 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYG--KVLECDIV---------KNYGFVHIEDKTAAEDAIRNLHGYTL---HGVNINVE 69 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhC--ceEeeeee---------cccceEEeecccccHHHHhhccccee---cceEEEEE
Confidence 799999999999999999999999 99999999 77999999999999999999999988 48888888
Q ss_pred ccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 004069 358 FADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (775)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (775)
-+++.. ..+++|||+||.+.++.++|+..|++||.|..|+|+++ |+||.|.-.++|..||+.|||
T Consensus 70 aSksKs-------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 70 ASKSKS-------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred eccccC-------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccc
Confidence 776652 24589999999999999999999999999999999955 999999999999999999999
Q ss_pred CccCCCcceEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004069 438 AELGEGDNKAKVRARLSRPLQRGKGKHASRGDFRSGRGTGRATRGSWGLPSPRSLPG 494 (775)
Q Consensus 438 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~rg~~rgg~g~~~g~~g~~g~~~~~~~~~ 494 (775)
++|.|.. .+|++..++-.. ..+.+-.-+++ ..|.-|.|...+|....+
T Consensus 135 ~~~~gk~--m~vq~stsrlrt-apgmgDq~~cy------rcGkeghwskEcP~~~~~ 182 (346)
T KOG0109|consen 135 TEFQGKR--MHVQLSTSRLRT-APGMGDQSGCY------RCGKEGHWSKECPVDRTG 182 (346)
T ss_pred cccccce--eeeeeecccccc-CCCCCCHHHhe------eccccccccccCCccCCC
Confidence 9999844 555555544211 12222222333 345668888888765443
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=8.9e-21 Score=183.53 Aligned_cols=169 Identities=20% Similarity=0.378 Sum_probs=154.0
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
...+.|+|.-||.++|+++|+.+|...| .|++|+|++| +.+|.+-||+||.|.+.++|++|+..||+..+ ..++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiG--eiEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KT 112 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIG--EIESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKT 112 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhccc--ceeeeeeeec-cccccccccceeeecChHHHHHHHhhhcceee---ccce
Confidence 3456899999999999999999999999 9999999999 58999999999999999999999999999877 4899
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
|+|+++.+.... .....|||.+||..+|..+|.++|++||.|..-+|+.+..||.++|.+||.|+-..+|+.||+
T Consensus 113 IKVSyARPSs~~-----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 113 IKVSYARPSSDS-----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred EEEEeccCChhh-----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 999999875443 233789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEeec
Q 004069 434 SINNAELGEGDNKAKVRARL 453 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~ 453 (775)
.|||..-.|....++|+++.
T Consensus 188 ~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred hccCCCCCCCCCCeEEEecC
Confidence 99999998877777776654
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.83 E-value=3.9e-20 Score=213.44 Aligned_cols=167 Identities=19% Similarity=0.420 Sum_probs=130.8
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCC----------CceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHc
Q 004069 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGV----------DNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (775)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~----------~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~ 342 (775)
....++|||+|||+.+|+++|.++|..++. ..|..+.+ ++.++||||+|.+.++|..||+ |+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 345679999999999999999999997620 12333333 3448999999999999999994 77
Q ss_pred CCceeccCCCCceecccCCCCCC------------------------CccccccccceecCCCCCCCCHHHHHHHHhccC
Q 004069 343 KRDVLFGVDRPAKVSFADSFIDP------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG 398 (775)
Q Consensus 343 ~~~i~~~~~~~l~v~~a~~~~~~------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G 398 (775)
+..+ .+..|.|......... ........++|||+|||..+|+++|+++|..||
T Consensus 244 g~~~---~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 244 SIIY---SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred CeEe---eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 7655 3677777644322200 000122357899999999999999999999999
Q ss_pred CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEee
Q 004069 399 EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRAR 452 (775)
Q Consensus 399 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~ 452 (775)
.|..|.|+++..+|+++|||||+|.+.++|..||..|||..|.+.. +.|..+
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~--l~v~~a 372 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK--LHVQRA 372 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE--EEEEEC
Confidence 9999999999999999999999999999999999999999998743 444443
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=9.6e-20 Score=189.39 Aligned_cols=165 Identities=21% Similarity=0.394 Sum_probs=138.5
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
...+.|||+.||.++.+++|..+|++.| .|.+++||.+. ..|.++|||||.|.+.+.|+.|++.||+..|. .++.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG--~I~elRLMmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--~GK~ 155 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIG--KIYELRLMMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--PGKL 155 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcc--ceeeEEEeecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc--CCCE
Confidence 4457899999999999999999999999 99999999994 68999999999999999999999999999886 5788
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCC-EEEEEEecCCCC-CCcccEEEEEeCCHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGE-ITKIELARNMPS-AKRKDFGFVTFDTHDAAVTC 431 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A 431 (775)
|.|..+- ..++|||+|||.++++++|.+.|++.+. |+.|.|...+.+ .+++|||||+|.++..|..|
T Consensus 156 igvc~Sv-----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~a 224 (506)
T KOG0117|consen 156 LGVCVSV-----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMA 224 (506)
T ss_pred eEEEEee-----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHH
Confidence 8876553 3489999999999999999999999986 777877766544 68999999999999999999
Q ss_pred HHHhCCCccCCCcceEEEEeeccCC
Q 004069 432 AKSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 432 ~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
..+|-...|.-.+. .+.+.|+.|
T Consensus 225 RrKl~~g~~klwgn--~~tVdWAep 247 (506)
T KOG0117|consen 225 RRKLMPGKIKLWGN--AITVDWAEP 247 (506)
T ss_pred HhhccCCceeecCC--cceeeccCc
Confidence 88776655543232 334444443
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.81 E-value=5.1e-20 Score=181.58 Aligned_cols=152 Identities=26% Similarity=0.515 Sum_probs=138.3
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC--
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ-- 274 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~-- 274 (775)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ |+||-..+...|..||..||+..|+|..|.|..++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 45999999999999999999999999999999955 89999999999999999999999999999998774
Q ss_pred --CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCC
Q 004069 275 --DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (775)
Q Consensus 275 --~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~ 352 (775)
.+++|+|+||.+.++.++|+..|+++| .+.+|.|+ ++++||.|.-.++|..|++.|+++.+ .++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~yg--pviecdiv---------kdy~fvh~d~~eda~~air~l~~~~~---~gk 140 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYG--PVIECDIV---------KDYAFVHFDRAEDAVEAIRGLDNTEF---QGK 140 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccC--Cceeeeee---------cceeEEEEeeccchHHHHhccccccc---ccc
Confidence 457899999999999999999999999 89999998 67999999999999999999999988 599
Q ss_pred CceecccCCCCCCCcccc
Q 004069 353 PAKVSFADSFIDPGDEIM 370 (775)
Q Consensus 353 ~l~v~~a~~~~~~~~~~~ 370 (775)
++.|+++.+.....+.+.
T Consensus 141 ~m~vq~stsrlrtapgmg 158 (346)
T KOG0109|consen 141 RMHVQLSTSRLRTAPGMG 158 (346)
T ss_pred eeeeeeeccccccCCCCC
Confidence 999998877655544333
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.81 E-value=1.6e-19 Score=166.93 Aligned_cols=169 Identities=24% Similarity=0.379 Sum_probs=144.6
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
...+|||+||+..++++.|+++|-+.| .+.++.+.++ +.++..+|||||+|.++++|.-|++.|+.-.+ -+++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqag--pVv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAG--PVVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcC--ceeeeecchh-hhcccccceeEEEEechhhhHHHHHHHHHHHh---cCcee
Confidence 446999999999999999999999999 8999999888 46778999999999999999999999984444 29999
Q ss_pred eecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEE-EEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 355 KVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 355 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
+|..+..... ...-+.+|||+||.+.+++..|.+.|+.||.|.. -.|+++..||+++|||||.|.+.+.+.+||.
T Consensus 82 rv~kas~~~~----nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 82 RVNKASAHQK----NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred EEEecccccc----cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHH
Confidence 9988873222 2223378999999999999999999999998765 4789999999999999999999999999999
Q ss_pred HhCCCccCCCcceEEEEeeccC
Q 004069 434 SINNAELGEGDNKAKVRARLSR 455 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~ 455 (775)
.|||..+.. ..++|..++.+
T Consensus 158 s~ngq~l~n--r~itv~ya~k~ 177 (203)
T KOG0131|consen 158 SMNGQYLCN--RPITVSYAFKK 177 (203)
T ss_pred HhccchhcC--CceEEEEEEec
Confidence 999999975 44566555543
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.78 E-value=4.7e-19 Score=163.91 Aligned_cols=166 Identities=25% Similarity=0.425 Sum_probs=146.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...||||+||+..++++.|.++|.+.|+|+.++|.++..+...+|||||+|.+.++|.-|++.||...|.|+.|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCcee
Q 004069 275 -------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (775)
Q Consensus 275 -------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~ 347 (775)
....|||+||.+.+++..|.+.|+.||. .+....++++ ..++.+++|+||.|.+.+.+.+|+..+++..+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc-cccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 2357999999999999999999999994 3444566666 36899999999999999999999999998766
Q ss_pred ccCCCCceecccCCCCCC
Q 004069 348 FGVDRPAKVSFADSFIDP 365 (775)
Q Consensus 348 ~~~~~~l~v~~a~~~~~~ 365 (775)
..+++.|.++......
T Consensus 165 --~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 165 --CNRPITVSYAFKKDTK 180 (203)
T ss_pred --cCCceEEEEEEecCCC
Confidence 4788888887654433
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=1.9e-18 Score=189.64 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=163.2
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC--
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS-- 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a-- 273 (775)
...|||+|||+.+++++|..+| |||.|...+.|.+|...|++..+.|+-|.|.+.
T Consensus 227 tgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~ 283 (725)
T KOG0110|consen 227 TGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKE 283 (725)
T ss_pred hhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcch
Confidence 4459999999999999999998 677777777777777777777777777765432
Q ss_pred --------------------------------------------------------------------------------
Q 004069 274 -------------------------------------------------------------------------------- 273 (775)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (775)
T Consensus 284 k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e 363 (725)
T KOG0110|consen 284 KSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQE 363 (725)
T ss_pred hhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchh
Confidence
Q ss_pred -------------------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHH
Q 004069 274 -------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDA 334 (775)
Q Consensus 274 -------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A 334 (775)
...+.|+|+|||..+..++|..+|..|| .|..+.+ ... -..++|+|.+..+|
T Consensus 364 ~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG--~i~rvll-p~~------G~~aiv~fl~p~eA 434 (725)
T KOG0110|consen 364 VRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFG--EIGRVLL-PPG------GTGAIVEFLNPLEA 434 (725)
T ss_pred hhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhccc--ccceeec-Ccc------cceeeeeecCccch
Confidence 0115688999999999999999999999 7777733 221 23489999999999
Q ss_pred HHHHHHHcCCceeccCCCCceecccCCC----------------CC----C-------------Ccc------------c
Q 004069 335 MDAFKRLQKRDVLFGVDRPAKVSFADSF----------------ID----P-------------GDE------------I 369 (775)
Q Consensus 335 ~~Al~~l~~~~i~~~~~~~l~v~~a~~~----------------~~----~-------------~~~------------~ 369 (775)
.+|+..|....+. ..++.+.|+... .. . ... .
T Consensus 435 r~Afrklaysr~k---~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 435 RKAFRKLAYSRFK---SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred HHHHHHhchhhhc---cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhc
Confidence 9999988776552 223322222100 00 0 000 0
Q ss_pred cccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 004069 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSA---KRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (775)
....++|||.||++.+|.++|..+|.+.|.|..|.|...+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.+.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 0112349999999999999999999999999999887654321 3459999999999999999999999999985544
Q ss_pred EEE
Q 004069 447 AKV 449 (775)
Q Consensus 447 ~~v 449 (775)
|.+
T Consensus 592 lk~ 594 (725)
T KOG0110|consen 592 LKI 594 (725)
T ss_pred EEe
Confidence 433
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=1.1e-16 Score=169.32 Aligned_cols=237 Identities=19% Similarity=0.271 Sum_probs=169.3
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC-
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS- 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a- 273 (775)
....|.+++|||++|+++|.+||+.|+ |+.+.+. ..+|+..|-|||+|.+.+++++||+ ++...+..+-|.|-.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 345699999999999999999999996 5555554 4569999999999999999999999 5777777788877544
Q ss_pred ----------------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHH
Q 004069 274 ----------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (775)
Q Consensus 274 ----------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~A 337 (775)
.....|.|.+||+.||+++|.++|+..-.+.. .|.++.+ ..+++.+-|||+|.+.+.|++|
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~d--~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPMD--QRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCccccc-ceeeecc--CCCCcccceEEEecCHHHHHHH
Confidence 12357889999999999999999998753222 3444444 5678999999999999999999
Q ss_pred HHHHcC----CceeccCCCCc-------------------------ee--cccCCC------------------------
Q 004069 338 FKRLQK----RDVLFGVDRPA-------------------------KV--SFADSF------------------------ 362 (775)
Q Consensus 338 l~~l~~----~~i~~~~~~~l-------------------------~v--~~a~~~------------------------ 362 (775)
|..... .-|.+...... +. .+....
T Consensus 162 l~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~ 241 (510)
T KOG4211|consen 162 LGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPS 241 (510)
T ss_pred HHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcc
Confidence 963221 11111000000 00 000000
Q ss_pred -CC---------------CC-------------ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCC
Q 004069 363 -ID---------------PG-------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413 (775)
Q Consensus 363 -~~---------------~~-------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~ 413 (775)
.. .. ........++++.+||...+..+|..+|...-.+ .|.|-.. .+|+
T Consensus 242 ~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr 319 (510)
T KOG4211|consen 242 LQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGR 319 (510)
T ss_pred ccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCc
Confidence 00 00 0000112678999999999999999999976555 5666555 4689
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccC
Q 004069 414 RKDFGFVTFDTHDAAVTCAKSINNAELG 441 (775)
Q Consensus 414 ~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (775)
..|-|+|+|.|+++|..|+. -++..+.
T Consensus 320 ~TGEAdveF~t~edav~Ams-kd~anm~ 346 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMG-KDGANMG 346 (510)
T ss_pred cCCcceeecccchhhHhhhc-cCCcccC
Confidence 99999999999999999975 4444443
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=7.4e-18 Score=164.02 Aligned_cols=174 Identities=24% Similarity=0.461 Sum_probs=149.2
Q ss_pred CccccccCCC------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHH
Q 004069 265 GKQCGVTPSQ------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAF 338 (775)
Q Consensus 265 gr~i~V~~a~------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al 338 (775)
.+.|.|+++. +.++|||+-|.+...+++++.+|..|| .|.+|.+.+. ..|.++||+||.|.+..+|..|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG--~~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFG--NIEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccC--CcceeEEecC--CCCCCCCceEEEeccchHHHHHH
Confidence 3567777763 457899999999999999999999999 8999999876 57899999999999999999999
Q ss_pred HHHcCCceeccCCCCceecccCCCCCC-----------------------------------------------------
Q 004069 339 KRLQKRDVLFGVDRPAKVSFADSFIDP----------------------------------------------------- 365 (775)
Q Consensus 339 ~~l~~~~i~~~~~~~l~v~~a~~~~~~----------------------------------------------------- 365 (775)
..||+...+.+....+.|.|++.....
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 999999888777777777774322100
Q ss_pred --------------------------------------------------------------------------------
Q 004069 366 -------------------------------------------------------------------------------- 365 (775)
Q Consensus 366 -------------------------------------------------------------------------------- 365 (775)
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence
Q ss_pred ----------------------------------------CccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEE
Q 004069 366 ----------------------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405 (775)
Q Consensus 366 ----------------------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i 405 (775)
........++|||-.||.+..+.+|.+.|-.||.|+..+|
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 0000012279999999999999999999999999999999
Q ss_pred ecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 406 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..|+.|+.+|.|+||.|+++.+|+.||..|||..|+-
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 9999999999999999999999999999999999974
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.5e-16 Score=149.93 Aligned_cols=72 Identities=21% Similarity=0.497 Sum_probs=69.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345889999999999999999999999999999999999999999999999999999999999999999987
No 41
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=5.3e-16 Score=142.96 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=67.1
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeec
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARL 453 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~ 453 (775)
++|||+||+..+++.+|..+|..||.|..|+|.+++ .|||||+|++..+|..|+..|||+.|.| +.|.|.+
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~ 81 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVEL 81 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccC----ceEEEEe
Confidence 899999999999999999999999999999999874 8999999999999999999999999987 4455555
Q ss_pred cCCC
Q 004069 454 SRPL 457 (775)
Q Consensus 454 ~~~~ 457 (775)
+...
T Consensus 82 S~G~ 85 (195)
T KOG0107|consen 82 STGR 85 (195)
T ss_pred ecCC
Confidence 5433
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=8.8e-17 Score=162.62 Aligned_cols=162 Identities=20% Similarity=0.409 Sum_probs=141.6
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCcee
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
++|||+.|.+.+.++.|+..|..|| .|.+|.+.-+ ..++++++||||+|.-.+.|..|++.+|+..+ .++.|+|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFG--PIKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml---GGRNiKV 187 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQML---GGRNIKV 187 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCC--Ccceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccccc---cCccccc
Confidence 5899999999999999999999999 7777777655 36899999999999999999999999999766 4888888
Q ss_pred cccCCCCCCCc------cccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHH
Q 004069 357 SFADSFIDPGD------EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVT 430 (775)
Q Consensus 357 ~~a~~~~~~~~------~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 430 (775)
....+..+... .....-++|||..+..+.+++||+.+|+.||.|+.|.|.+.+.++..+||+||+|.+..+...
T Consensus 188 grPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 188 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred cCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 86655433322 122345899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCCc
Q 004069 431 CAKSINNAELGEGD 444 (775)
Q Consensus 431 A~~~l~g~~~~g~~ 444 (775)
||..||-..++|.-
T Consensus 268 AiasMNlFDLGGQy 281 (544)
T KOG0124|consen 268 AIASMNLFDLGGQY 281 (544)
T ss_pred Hhhhcchhhcccce
Confidence 99999999988743
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.2e-15 Score=141.10 Aligned_cols=165 Identities=19% Similarity=0.325 Sum_probs=135.4
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
..++|||+|||..+.+.+|.++|.+|| .|..|.|. +.-....||||+|.+..+|..|+..-++..+ .+..|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg--~i~~ieLK----~r~g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rL 75 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYG--RIREIELK----NRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRL 75 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhc--ceEEEEec----cCCCCCCeeEEEecCccchhhhhhccccccc---CcceE
Confidence 457899999999999999999999999 78888774 3344578999999999999999997777766 58999
Q ss_pred eecccCCCCCCC---------------------ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCC
Q 004069 355 KVSFADSFIDPG---------------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413 (775)
Q Consensus 355 ~v~~a~~~~~~~---------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~ 413 (775)
.|.|+....... ........+|.|.+||.+.+|+||++++.+-|.|....+.++
T Consensus 76 RVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----- 150 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----- 150 (241)
T ss_pred EEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----
Confidence 999986543211 111223468999999999999999999999999999999876
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeeccC
Q 004069 414 RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR 455 (775)
Q Consensus 414 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~ 455 (775)
|++.|+|...++.+-|+..|+.+.|..-....-+.+....
T Consensus 151 --g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~ 190 (241)
T KOG0105|consen 151 --GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDE 190 (241)
T ss_pred --cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccC
Confidence 5999999999999999999999988765555555555443
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.67 E-value=1.2e-16 Score=166.46 Aligned_cols=199 Identities=23% Similarity=0.387 Sum_probs=157.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
+.++|||++|+|.++++.|+..|.+||+|.+|.|++++.++.+++|+||+|++.+...++|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56779999999999999999999999999999999999999999999999999999998887 45677999999888773
Q ss_pred C------------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHc
Q 004069 275 D------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (775)
Q Consensus 275 ~------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~ 342 (775)
. ..+|||+.|+..+++.+|++.|.++| .|..+.++.+ +.+.++++|+||.|.+.+.+.+++.. .
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~-~ 159 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ-K 159 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec-ccccccccceeeEeccccccceeccc-c
Confidence 2 34899999999999999999999999 7888888888 57889999999999999999888752 1
Q ss_pred CCceeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEE
Q 004069 343 KRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEIT 401 (775)
Q Consensus 343 ~~~i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~ 401 (775)
.+.+ .++.+.|..|.+..................|+....+.-.|..+|..|+.+.
T Consensus 160 f~~~---~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 160 FHDF---NGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred eeee---cCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccc
Confidence 2222 4777777777655433322222222333334555555556667777776654
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.65 E-value=1.2e-16 Score=171.25 Aligned_cols=169 Identities=23% Similarity=0.420 Sum_probs=141.8
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
.+.+++|+-.|....+..+|.++|..+| .|..|.++.+ .+.+.++|.+||+|.+.+....|+ .|.+..++ +.+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~g--kVrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---g~p 249 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVG--KVRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---GVP 249 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhc--CcceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCCccc---Cce
Confidence 4557888888999999999999999999 8999999998 578899999999999999998888 46776664 778
Q ss_pred ceecccCCCCCC--------C-ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCC
Q 004069 354 AKVSFADSFIDP--------G-DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDT 424 (775)
Q Consensus 354 l~v~~a~~~~~~--------~-~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 424 (775)
+.|+......+. . .....+...|||+||.+++++++|+.+|+.||.|..|.+.++..||+++||+||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 887765322211 0 1112233459999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccCCCcceEEE
Q 004069 425 HDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 425 ~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
.++|++|+..|||.+|-|..+++-+
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEE
Confidence 9999999999999999886655443
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=155.53 Aligned_cols=239 Identities=19% Similarity=0.257 Sum_probs=177.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcC--CcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKN--PVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~--~~~~gr~i~V~~ 272 (775)
....|.|+|||+++++.+|..++..||+|+.+.+++.+ .-|||+|.+.++|...+..... ..+.|+.|.|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 45679999999999999999999999999999987643 2699999999999884432221 123333333322
Q ss_pred C--------------------------------------------CCC--CcccccCccccccHHHHHHHHhhcCCCcee
Q 004069 273 S--------------------------------------------QDS--DTLFLGNICKTWTKEALKEKLKHYGVDNVE 306 (775)
Q Consensus 273 a--------------------------------------------~~~--~~l~V~nLp~~~te~~L~~~F~~~G~~~i~ 306 (775)
+ .++ -.++|.|+-..++-+-|-++|++|| .+.
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG--~Vl 178 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFG--FVL 178 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcc--eeE
Confidence 2 000 2356788888899999999999999 666
Q ss_pred eeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCC----------C--------CCC--
Q 004069 307 DLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF----------I--------DPG-- 366 (775)
Q Consensus 307 ~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~----------~--------~~~-- 366 (775)
.|.-+... ..=-|+|+|.+...|..|...|.++.|.-+ +.++++.|+.-. . ...
T Consensus 179 KIiTF~Kn-----n~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFTKN-----NGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEecc-----cchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 66554332 122378999999999999999999888654 455555553110 0 000
Q ss_pred ------------------------------------cccccc--ccceecCCCCCC-CCHHHHHHHHhccCCEEEEEEec
Q 004069 367 ------------------------------------DEIMAQ--VKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELAR 407 (775)
Q Consensus 367 ------------------------------------~~~~~~--~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~ 407 (775)
..+..+ ...|.|.||... +|.+.|..+|.-||.|.+|+|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 000011 367889999877 99999999999999999999998
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeeccCC
Q 004069 408 NMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 408 ~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
++ +--|+|+|.+...|+-|+.+|+|..|.| +.+++.+++-
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SKH 372 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSKH 372 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecC----ceEEEeeccC
Confidence 84 5789999999999999999999999987 6677777663
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.7e-15 Score=163.59 Aligned_cols=236 Identities=20% Similarity=0.355 Sum_probs=178.5
Q ss_pred CccEEEEcCCCCCCcHHHHHhhcccc-----------C-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQV-----------G-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPV 262 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~-----------G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~ 262 (775)
..+.++|+++|+.++++.+..+|..- | .|+.+.|- ..+.||||+|.+.+.|..|+. +++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccchh
Confidence 34569999999999999999988764 2 25555553 347799999999999999998 67777
Q ss_pred ccCccccccCC-----------------------------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeec
Q 004069 263 INGKQCGVTPS-----------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED 313 (775)
Q Consensus 263 ~~gr~i~V~~a-----------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d 313 (775)
+.|+.+.+... ...+.|||++||...++.++++++..|| .+....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg--~lk~f~lv~d 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG--PLKAFRLVKD 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcc--cchhheeecc
Confidence 77776655211 1236799999999999999999999999 7888888888
Q ss_pred CCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCC-----C--------------cccccccc
Q 004069 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP-----G--------------DEIMAQVK 374 (775)
Q Consensus 314 ~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~-----~--------------~~~~~~~~ 374 (775)
. .++.+++|||.+|.+......|+..||+..+. ++.+.|+.+-..... . +....++.
T Consensus 325 ~-~~g~skg~af~ey~dpsvtd~A~agLnGm~lg---d~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~ 400 (500)
T KOG0120|consen 325 S-ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG---DKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTE 400 (500)
T ss_pred c-ccccccceeeeeeeCCcchhhhhcccchhhhc---CceeEeehhhccchhccccCCccccccccchhhhcccCCCcch
Confidence 4 56899999999999999999999999887763 566666654211100 0 11122345
Q ss_pred ceecCCCCC--CCC--------HHHHHHHHhccCCEEEEEEecCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 004069 375 TVFVDGLPA--SWD--------EDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (775)
Q Consensus 375 ~l~V~nLp~--~~t--------~~~L~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (775)
.|++.|+-. ... -++|+..|.+||.|..|.|.+...+ .-..|..||+|.+.++|++|++.|+|++|.
T Consensus 401 Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~ 480 (500)
T KOG0120|consen 401 VLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA 480 (500)
T ss_pred hhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC
Confidence 555555521 111 1577788899999999999987322 334688999999999999999999999998
Q ss_pred CC
Q 004069 442 EG 443 (775)
Q Consensus 442 g~ 443 (775)
++
T Consensus 481 nR 482 (500)
T KOG0120|consen 481 NR 482 (500)
T ss_pred Cc
Confidence 74
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.62 E-value=1.5e-15 Score=158.40 Aligned_cols=171 Identities=23% Similarity=0.470 Sum_probs=138.3
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCc
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA 354 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l 354 (775)
..++|||++|.|.++++.|+..|.++| .|..|.++++. .++++++|+||+|.+.....+++.....+ | .++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~G--ev~d~~vm~d~-~t~rsrgFgfv~f~~~~~v~~vl~~~~h~-~---dgr~v 77 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFG--EVTDCVVMRDP-STGRSRGFGFVTFATPEGVDAVLNARTHK-L---DGRSV 77 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccC--ceeeEEEeccC-CCCCcccccceecCCCcchheeecccccc-c---CCccc
Confidence 457899999999999999999999999 99999999995 56999999999999998888887643222 2 25666
Q ss_pred eecccCCCCCCCc-cccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 355 KVSFADSFIDPGD-EIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 355 ~v~~a~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
.+..+-+...... .....+.+|||++||..+++++|+++|.+||.|..+.|+.+..+.+.+||+||+|.+.+++.+++.
T Consensus 78 e~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 78 EPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred cceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 6555544332221 112256899999999999999999999999999999999999999999999999999999999855
Q ss_pred HhCCCccCCCcceEEEEeeccC
Q 004069 434 SINNAELGEGDNKAKVRARLSR 455 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~ 455 (775)
..-+.|.+ ..|.|+.+..+
T Consensus 158 -~~f~~~~g--k~vevkrA~pk 176 (311)
T KOG4205|consen 158 -QKFHDFNG--KKVEVKRAIPK 176 (311)
T ss_pred -cceeeecC--ceeeEeeccch
Confidence 56666765 45666666544
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.62 E-value=1.5e-14 Score=149.29 Aligned_cols=236 Identities=20% Similarity=0.317 Sum_probs=182.7
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcce-EEEEEccHHHHHHHHHhhcCCcccCccccc--cCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGF-AFLRFATVEQARQAVTELKNPVINGKQCGV--TPS 273 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~-afV~F~s~e~A~~Al~~l~~~~~~gr~i~V--~~a 273 (775)
..++|.|+-+.++-+-|.++|+.||.|.+|.-+.. +.+| |+|+|.+.+.|..|...|++..|-.-.|.+ ..+
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 45899999999999999999999999988766542 2333 899999999999999999987664433322 111
Q ss_pred -------------------------------------------------------------------C--CCCcccccCc
Q 004069 274 -------------------------------------------------------------------Q--DSDTLFLGNI 284 (775)
Q Consensus 274 -------------------------------------------------------------------~--~~~~l~V~nL 284 (775)
. .+..|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 0 0245666777
Q ss_pred c-ccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCC
Q 004069 285 C-KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFI 363 (775)
Q Consensus 285 p-~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~ 363 (775)
. ..+|.+.|..+|.-|| .|..|+|+... +..|+|++.+..+|..|+..|++..+. ++.|+|.++....
T Consensus 306 n~~~VT~d~LftlFgvYG--dVqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l~---gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYG--DVQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKLY---GKKLRVTLSKHTN 374 (492)
T ss_pred chhccchhHHHHHHhhhc--ceEEEEeeecC------CcceeeeecchhHHHHHHHHhhcceec---CceEEEeeccCcc
Confidence 5 5689999999999999 89999998774 567999999999999999999998874 7888888764332
Q ss_pred CC------------------------------CccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCC
Q 004069 364 DP------------------------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK 413 (775)
Q Consensus 364 ~~------------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~ 413 (775)
-. -..+-.++.+|++.|+|.++++++|+.+|...|-++...... ++
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~k 450 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QK 450 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CC
Confidence 10 011224557899999999999999999999998765544332 33
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeeccC
Q 004069 414 RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSR 455 (775)
Q Consensus 414 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~ 455 (775)
.+-+|+++|.+.+.|..|+-.|+++.+.++ ..+++.|++
T Consensus 451 d~kmal~q~~sveeA~~ali~~hnh~lgen---~hlRvSFSk 489 (492)
T KOG1190|consen 451 DRKMALPQLESVEEAIQALIDLHNHYLGEN---HHLRVSFSK 489 (492)
T ss_pred CcceeecccCChhHhhhhccccccccCCCC---ceEEEEeec
Confidence 467999999999999999999999999764 345555554
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=6e-14 Score=142.97 Aligned_cols=235 Identities=23% Similarity=0.229 Sum_probs=184.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhh--cCCcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL--KNPVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l--~~~~~~gr~i~V~~ 272 (775)
..-.|.|++|...+++.+|.+.++.||+|..|.++.. +..|.|+|.+.+.|+.|+... +...+.|++..+..
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 4456999999999999999999999999999888753 446999999999999998753 44456777766655
Q ss_pred C-------------CCCCcccc--cCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHH
Q 004069 273 S-------------QDSDTLFL--GNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (775)
Q Consensus 273 a-------------~~~~~l~V--~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~A 337 (775)
+ ..+..|.+ -|--..+|.+-|.+++..+| .+..|.|++.. --.|.|+|.+.+.|++|
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~G--kVlRIvIfkkn------gVQAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQG--KVLRIVIFKKN------GVQAMVEFDSVEVAQRA 175 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCC--ceEEEEEEecc------ceeeEEeechhHHHHHH
Confidence 4 22233333 44456789999999999999 89999998662 45699999999999999
Q ss_pred HHHHcCCceeccCCCCceecccCCCCCC----------------------------------------------------
Q 004069 338 FKRLQKRDVLFGVDRPAKVSFADSFIDP---------------------------------------------------- 365 (775)
Q Consensus 338 l~~l~~~~i~~~~~~~l~v~~a~~~~~~---------------------------------------------------- 365 (775)
...||+.+|..+ ..+|++.++.+..-.
T Consensus 176 k~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 176 KAALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred Hhhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 999999998665 667777776433200
Q ss_pred -------------------C------ccccccccceecCCCCCC-CCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEE
Q 004069 366 -------------------G------DEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGF 419 (775)
Q Consensus 366 -------------------~------~~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~af 419 (775)
. .....+...+.|-+|... ++-+.|..+|..||.|..|++++.. .|.|+
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtam 329 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAM 329 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeE
Confidence 0 001112357889999877 7788999999999999999999874 68999
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 420 VTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 420 V~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
|++.+..+.++|+..||+..+.|+.+.+.+
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 999999999999999999999875544433
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.57 E-value=6.1e-14 Score=135.79 Aligned_cols=196 Identities=17% Similarity=0.315 Sum_probs=141.1
Q ss_pred cEEEEcCCCCCCcHHHHHh----hccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 197 FEVFVGGLDKDVVGDDLRK----VFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~----~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
.||+|.||+..+..++|+. +|++||.|..|...+ +.+.+|-|||.|.+.+.|-.|+..|+|..|.|+.++|.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3899999999999999887 999999999999874 467899999999999999999999999999999999999
Q ss_pred CCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCC
Q 004069 273 SQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (775)
Q Consensus 273 a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~ 352 (775)
|....+++..--+..+... . .+....+.... .....++..+. ++...
T Consensus 87 A~s~sdii~~~~~~~v~~~---------~--k~~~~~~~~~~-~~~~~ng~~~~--------------~~~~~------- 133 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKE---------K--KINGEILARIK-QPLDTNGHFYN--------------MNRMN------- 133 (221)
T ss_pred ccCccchhhccCceecccc---------C--ccccccccccC-Ccccccccccc--------------ccccc-------
Confidence 9877665553222111110 0 00000010000 00000111110 01100
Q ss_pred CceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 353 PAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 353 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
+...+ . .....+..+||+.|||..++.+.|..+|.+|.-...|+++... .+.|||+|.+...|..|.
T Consensus 134 -~p~p~------~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~ 200 (221)
T KOG4206|consen 134 -LPPPF------L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQ 200 (221)
T ss_pred -CCCCc------c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHh
Confidence 00001 1 2234566899999999999999999999999999999988763 789999999999999999
Q ss_pred HHhCCCccC
Q 004069 433 KSINNAELG 441 (775)
Q Consensus 433 ~~l~g~~~~ 441 (775)
..|++..|-
T Consensus 201 ~~lq~~~it 209 (221)
T KOG4206|consen 201 QALQGFKIT 209 (221)
T ss_pred hhhccceec
Confidence 999998885
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.4e-14 Score=134.13 Aligned_cols=140 Identities=19% Similarity=0.341 Sum_probs=121.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
+..++|+|+|||.++.+.+|..+|.+||.|+.|.|. +......||||+|.++.+|+.||..-++..++|..|.|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK---~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELK---NRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEec---cCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 356789999999999999999999999999999884 33456889999999999999999999999999999999876
Q ss_pred CC--------------------------------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCcc
Q 004069 274 QD--------------------------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNR 321 (775)
Q Consensus 274 ~~--------------------------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~k 321 (775)
.. ...|.|.+||....|++|++++.+.| .+.-..+.++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD-------- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD-------- 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc--------
Confidence 21 24689999999999999999999999 5555555544
Q ss_pred ceEEeecCCHHHHHHHHHHHcCCce
Q 004069 322 GFAFLEFSSRSDAMDAFKRLQKRDV 346 (775)
Q Consensus 322 g~afVeF~s~e~A~~Al~~l~~~~i 346 (775)
+.+.|+|...++.+-|+..|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 5899999999999999998876544
No 53
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=7.3e-14 Score=131.85 Aligned_cols=72 Identities=21% Similarity=0.420 Sum_probs=69.1
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...|.|.||.+.++.++|+.+|++||.|.+|.|++++.|+.++|||||.|....+|+.|+++|+|..|+|..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 378999999999999999999999999999999999999999999999999999999999999999999843
No 54
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.54 E-value=4e-12 Score=135.17 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=117.4
Q ss_pred cccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHH----HcCCceeccCCCC
Q 004069 278 TLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKR----LQKRDVLFGVDRP 353 (775)
Q Consensus 278 ~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~----l~~~~i~~~~~~~ 353 (775)
.|.+.+|||++|+++|.++|..++ |.++.+.+. +|+..|-|||+|.+.+++.+||++ |...-|.+.....
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 577899999999999999999986 777666543 689999999999999999999974 2223333333333
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEE-EEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
..+.|.-....... ......|-+.+||+.||++||.+||+..-.|.. |.|+.+ ..+++.|.|||+|++.+.|+.||
T Consensus 86 ~e~d~~~~~~g~~s--~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 86 AEADWVMRPGGPNS--SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccccccccCCCCCC--CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHH
Confidence 33333332222211 134468899999999999999999998877776 334444 46779999999999999999997
Q ss_pred HHhCCCccCCCcceEEEEe
Q 004069 433 KSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~ 451 (775)
. -|...|. ..-+.|-.
T Consensus 163 ~-rhre~iG--hRYIEvF~ 178 (510)
T KOG4211|consen 163 G-RHRENIG--HRYIEVFR 178 (510)
T ss_pred H-HHHHhhc--cceEEeeh
Confidence 6 3444443 33344433
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.4e-14 Score=137.95 Aligned_cols=161 Identities=21% Similarity=0.407 Sum_probs=135.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCC-cccC--cccccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VING--KQCGVT 271 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~-~~~g--r~i~V~ 271 (775)
+.++|||+.|.....+++++.+|..||.|.+|.+++.. .|.++|+|||.|.+..+|..||..||+. ++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 45569999999999999999999999999999999875 4889999999999999999999999964 2222 112221
Q ss_pred CC------------------------------------------------------------------------------
Q 004069 272 PS------------------------------------------------------------------------------ 273 (775)
Q Consensus 272 ~a------------------------------------------------------------------------------ 273 (775)
++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 11
Q ss_pred --------------------------------------------------------------------------------
Q 004069 274 -------------------------------------------------------------------------------- 273 (775)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (775)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred --------------------------CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEee
Q 004069 274 --------------------------QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327 (775)
Q Consensus 274 --------------------------~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVe 327 (775)
.+.++|||-.||....+.+|.++|-.|| .|++.+++.| +.|+.+++|+||.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivSaKVFvD-RATNQSKCFGFVS 333 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVSAKVFVD-RATNQSKCFGFVS 333 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc--ceeeeeeeeh-hccccccceeeEe
Confidence 1117899999999999999999999999 8888888887 5789999999999
Q ss_pred cCCHHHHHHHHHHHcCCceeccCCCCceecccCCC
Q 004069 328 FSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSF 362 (775)
Q Consensus 328 F~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~ 362 (775)
|.+...|..|+..+|+-.|- .+.++|++-.+.
T Consensus 334 fDNp~SaQaAIqAMNGFQIG---MKRLKVQLKRPk 365 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIG---MKRLKVQLKRPK 365 (371)
T ss_pred cCCchhHHHHHHHhcchhhh---hhhhhhhhcCcc
Confidence 99999999999999998873 677777765543
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=1.2e-13 Score=130.25 Aligned_cols=83 Identities=27% Similarity=0.588 Sum_probs=77.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||+|||+.+|+++|+++|.+||.|+.|.|+.+..++++++||||+|.+.++|+.||+.|++..|.|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 543
No 57
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.8e-12 Score=127.97 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=75.4
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+-+||||+.|+.++++..|+..|+.||.|+.|.||++..||+++|||||+|++..+...|.+..+|.+|++.. |.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr--i~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR--ILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE--EEEE
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999744 5555
Q ss_pred eeccC
Q 004069 451 ARLSR 455 (775)
Q Consensus 451 ~~~~~ 455 (775)
+...+
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 55443
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.46 E-value=5.1e-13 Score=127.59 Aligned_cols=160 Identities=18% Similarity=0.249 Sum_probs=127.9
Q ss_pred CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCce
Q 004069 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAK 355 (775)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~ 355 (775)
-+||||.+||.++...+|..+|..|. ..+.+.|....+....++.+|||.|.+.+.|.+|++.||+-.+-...+..+.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~--GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFH--GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCC--CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 47999999999999999999999997 5777777766667777889999999999999999999999888777777777
Q ss_pred ecccCCCCCCC-----------------------------------------------cc--------------------
Q 004069 356 VSFADSFIDPG-----------------------------------------------DE-------------------- 368 (775)
Q Consensus 356 v~~a~~~~~~~-----------------------------------------------~~-------------------- 368 (775)
+.++....... +.
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 77764322100 00
Q ss_pred --------------ccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 004069 369 --------------IMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (775)
Q Consensus 369 --------------~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (775)
......+|||.||..+||+++|+.+|+.|--...++|... .....|||+|++.+.|..|+..
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHH
Confidence 0000148999999999999999999999976655665422 2356899999999999999999
Q ss_pred hCCCccC
Q 004069 435 INNAELG 441 (775)
Q Consensus 435 l~g~~~~ 441 (775)
|+|..|.
T Consensus 268 lqg~~~s 274 (284)
T KOG1457|consen 268 LQGNLLS 274 (284)
T ss_pred hhcceec
Confidence 9998874
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.45 E-value=8.4e-13 Score=135.11 Aligned_cols=246 Identities=15% Similarity=0.173 Sum_probs=171.6
Q ss_pred hccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 192 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
....+..|..++|||..++.+|..||+......-...+.....+...|.+.|.|.+.+.-..|++. |...+.++.|.|-
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievY 134 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVY 134 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeee
Confidence 345566788999999999999999998654333223333334577889999999999999999985 6667778888775
Q ss_pred CCC----------------------CCCcccccCccccccHHHHHHHHhhcCCC--ceeeeEEeecCCCCCCccceEEee
Q 004069 272 PSQ----------------------DSDTLFLGNICKTWTKEALKEKLKHYGVD--NVEDLTLVEDSNNEGMNRGFAFLE 327 (775)
Q Consensus 272 ~a~----------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~--~i~~i~l~~d~~~~g~~kg~afVe 327 (775)
.+. +...|.+.+||++++..++..+|.....+ ..+.|.++. ...|+..|-|||.
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVL 212 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEE
Confidence 441 12346679999999999999999744322 234444443 3578999999999
Q ss_pred cCCHHHHHHHHHHHcC----CceeccCCCC--------------ceecccCCCCCCC----ccccccccceecCCCCCCC
Q 004069 328 FSSRSDAMDAFKRLQK----RDVLFGVDRP--------------AKVSFADSFIDPG----DEIMAQVKTVFVDGLPASW 385 (775)
Q Consensus 328 F~s~e~A~~Al~~l~~----~~i~~~~~~~--------------l~v~~a~~~~~~~----~~~~~~~~~l~V~nLp~~~ 385 (775)
|...++|..||.+-.. +-|.+..... +.-....+..... -.......||-+.+||+..
T Consensus 213 fa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~A 292 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEA 292 (508)
T ss_pred ecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhh
Confidence 9999999999964221 1111111111 1100000000000 0111235799999999999
Q ss_pred CHHHHHHHHhccCC-EEE--EEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 004069 386 DEDRVRELLKNYGE-ITK--IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (775)
Q Consensus 386 t~~~L~~~f~~~G~-v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (775)
+.++|.+||..|-. |.. |+++.+ ..|++.|-|||+|.+.++|..|....+++...
T Consensus 293 tvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk 350 (508)
T KOG1365|consen 293 TVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMK 350 (508)
T ss_pred hHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc
Confidence 99999999999864 444 777776 46899999999999999999998888777664
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.4e-13 Score=134.86 Aligned_cols=146 Identities=19% Similarity=0.335 Sum_probs=120.6
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCcee
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
..|||++|++.+.+.+|..||..+| .|..+.+. .+|+||+|.+..+|..|+..|++..+. +..+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg--~~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~---~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYG--KIPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELC---GERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcc--ccccceee---------cccceeccCchhhhhcccchhcCceec---ceeeee
Confidence 3689999999999999999999999 67777665 789999999999999999999998875 334777
Q ss_pred cccCCCCCCC---------------ccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEE
Q 004069 357 SFADSFIDPG---------------DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVT 421 (775)
Q Consensus 357 ~~a~~~~~~~---------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 421 (775)
.++....... .....+.+.|+|.||+..+.|++|.++|.++|.+....+. .+++||+
T Consensus 68 e~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~ 139 (216)
T KOG0106|consen 68 EHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVE 139 (216)
T ss_pred ecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------cccccee
Confidence 7776421110 1112244789999999999999999999999999655553 6699999
Q ss_pred eCCHHHHHHHHHHhCCCccCCCc
Q 004069 422 FDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 422 F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
|.+.++|..||..|++..|.+..
T Consensus 140 Fs~~~da~ra~~~l~~~~~~~~~ 162 (216)
T KOG0106|consen 140 FSEQEDAKRALEKLDGKKLNGRR 162 (216)
T ss_pred ehhhhhhhhcchhccchhhcCce
Confidence 99999999999999999998743
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.42 E-value=2.6e-12 Score=130.64 Aligned_cols=192 Identities=19% Similarity=0.300 Sum_probs=133.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceE--------EEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--------EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK 266 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr 266 (775)
.+..|||.|||.++|.+++.++|++||.|. .|+|.++.+ |+.+|-|++.|-..+++..|++.|+...|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 455699999999999999999999999875 478888755 99999999999999999999999999999999
Q ss_pred cccccCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCce
Q 004069 267 QCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDV 346 (775)
Q Consensus 267 ~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i 346 (775)
.|+|..|+ |+..|. ..+.... .+++ .-.+-++.++...+
T Consensus 212 ~~rVerAk----------------------fq~Kge-----~~~~~k~--k~k~------------~~~kk~~k~q~k~~ 250 (382)
T KOG1548|consen 212 KLRVERAK----------------------FQMKGE-----YDASKKE--KGKC------------KDKKKLKKQQQKLL 250 (382)
T ss_pred EEEEehhh----------------------hhhccC-----cCccccc--cccc------------ccHHHHHHHHHhhc
Confidence 99998762 222220 0000000 0000 00111111222212
Q ss_pred eccCCCCceecccCCCCCCCccccccccceecCCCCC----CCC-------HHHHHHHHhccCCEEEEEEecCCCCCCcc
Q 004069 347 LFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPA----SWD-------EDRVRELLKNYGEITKIELARNMPSAKRK 415 (775)
Q Consensus 347 ~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~L~~~f~~~G~v~~v~i~~~~~~g~~~ 415 (775)
-+...+ .........++|.|.||=. ..+ +++|++-+.+||.|..|.|.-.+ +.
T Consensus 251 dw~pd~------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----Pd 314 (382)
T KOG1548|consen 251 DWRPDR------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PD 314 (382)
T ss_pred ccCCCc------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CC
Confidence 111111 0111122336777777732 122 36788889999999999987443 48
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 416 DFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 416 g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
|.+.|.|.+.++|..||+.|+|+.|.|+.
T Consensus 315 GvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 315 GVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred ceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 89999999999999999999999999844
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.4e-13 Score=129.10 Aligned_cols=82 Identities=32% Similarity=0.499 Sum_probs=77.2
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..++|-|.||+.++++.+|+++|.+||.|..|.|.+++.||.++|||||.|.+.++|++||..|||.-++. +.+++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEEEE
Confidence 44789999999999999999999999999999999999999999999999999999999999999998864 88888
Q ss_pred eccCCC
Q 004069 452 RLSRPL 457 (775)
Q Consensus 452 ~~~~~~ 457 (775)
.|++|.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999874
No 63
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.39 E-value=2.6e-11 Score=124.01 Aligned_cols=239 Identities=15% Similarity=0.187 Sum_probs=176.1
Q ss_pred EEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC--ccccccCCCC-
Q 004069 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING--KQCGVTPSQD- 275 (775)
Q Consensus 199 l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g--r~i~V~~a~~- 275 (775)
+-|-|--+.+|-+-|..++...|+|..|.|++. +--.|.|+|.+.+.|++|..+||+..|-- -.|+|..+++
T Consensus 125 ~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 125 FTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred EEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 345565678999999999999999999999863 23469999999999999999999876632 2334433300
Q ss_pred --------------------------------------------------------------------------------
Q 004069 276 -------------------------------------------------------------------------------- 275 (775)
Q Consensus 276 -------------------------------------------------------------------------------- 275 (775)
T Consensus 200 rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a 279 (494)
T KOG1456|consen 200 RLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYA 279 (494)
T ss_pred eeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCC
Confidence
Q ss_pred -------CCcccccCcc-ccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCcee
Q 004069 276 -------SDTLFLGNIC-KTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVL 347 (775)
Q Consensus 276 -------~~~l~V~nLp-~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~ 347 (775)
...+.|-+|. .+++-+.|..+|..|| +|..|++|+.. .+.|.|++.+..+.+.|+..||+..++
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk------~gtamVemgd~~aver~v~hLnn~~lf 351 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTK------PGTAMVEMGDAYAVERAVTHLNNIPLF 351 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecc------cceeEEEcCcHHHHHHHHHHhccCccc
Confidence 0223344443 3456778999999999 99999999875 788999999999999999999988773
Q ss_pred ccCCCCceecccCCCC--------------------------------CCCccccccccceecCCCCCCCCHHHHHHHHh
Q 004069 348 FGVDRPAKVSFADSFI--------------------------------DPGDEIMAQVKTVFVDGLPASWDEDRVRELLK 395 (775)
Q Consensus 348 ~~~~~~l~v~~a~~~~--------------------------------~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~ 395 (775)
+.+|.|.++.... .....+..++++|+..|.|..+|++.|..+|.
T Consensus 352 ---G~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n 428 (494)
T KOG1456|consen 352 ---GGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN 428 (494)
T ss_pred ---cceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhh
Confidence 6666665543211 00123445678999999999999999999998
Q ss_pred ccCC-EEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce--EEEEeeccC
Q 004069 396 NYGE-ITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK--AKVRARLSR 455 (775)
Q Consensus 396 ~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~--~~v~~~~~~ 455 (775)
..+. -..|+|..-+ ....--++++|++..+|..||..||...|.+-.-. .++++.++.
T Consensus 429 ek~v~~~svkvFp~k--serSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfst 489 (494)
T KOG1456|consen 429 EKDVPPTSVKVFPLK--SERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFST 489 (494)
T ss_pred hcCCCcceEEeeccc--ccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecc
Confidence 7664 3456665443 22244689999999999999999999999874333 344444443
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.38 E-value=4e-12 Score=121.49 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=114.6
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeec-CCCCCCcceEEEEEccHHHHHHHHHhhcCCccc---Ccccccc
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN-PQTKKNKGFAFLRFATVEQARQAVTELKNPVIN---GKQCGVT 271 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d-~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~---gr~i~V~ 271 (775)
-+||||.+||.++..-+|..+|..|--.+.+.|... +.....+.+|||.|.+...|..|+..||+..|+ +..|.+.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 568999999999999999999999876666665443 333446689999999999999999999998774 4555554
Q ss_pred CCC-----------------------------------------------------------------------------
Q 004069 272 PSQ----------------------------------------------------------------------------- 274 (775)
Q Consensus 272 ~a~----------------------------------------------------------------------------- 274 (775)
.++
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 330
Q ss_pred ---------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHH
Q 004069 275 ---------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFK 339 (775)
Q Consensus 275 ---------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~ 339 (775)
...+|||.||..+||+++|+.+|..|-...|..|+. ..| ...||++|...+.|..|+.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-----~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-----RGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-----CCC--cceEeecHHHHHHHHHHHH
Confidence 015899999999999999999999998444444432 222 5679999999999999999
Q ss_pred HHcCCcee
Q 004069 340 RLQKRDVL 347 (775)
Q Consensus 340 ~l~~~~i~ 347 (775)
.|++..+.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 99988764
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=1.2e-12 Score=107.70 Aligned_cols=66 Identities=27% Similarity=0.626 Sum_probs=63.5
Q ss_pred eecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 376 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
|||+|||..+|+++|+++|.+||.|..+.|..+ .++..+++|||+|.+.++|++|+..|||..|.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999987 678999999999999999999999999999987
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1e-12 Score=114.84 Aligned_cols=71 Identities=24% Similarity=0.364 Sum_probs=68.3
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.+++|||+||++.+++++|.++|+++|.|..|.+-.++.+..+.|||||+|.+.++|..|++-+||+.+..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999986
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.31 E-value=4.4e-12 Score=104.27 Aligned_cols=70 Identities=39% Similarity=0.727 Sum_probs=66.7
Q ss_pred EEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 199 l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
|||+|||..+|+++|+++|.+||.|..+.++.+ .++..+++|||+|.+.++|++|+..|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788999999999999999999999999999998874
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.6e-12 Score=123.65 Aligned_cols=77 Identities=31% Similarity=0.626 Sum_probs=71.8
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
-++|||++|+|.++.+.|+++|++||.|+++.|+.|+.+++++||+||+|.+.++|.+|++. -+.+|+||+..++.+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 35699999999999999999999999999999999999999999999999999999999995 567899999888766
No 69
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.6e-12 Score=123.67 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=68.6
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.-++|||+||+|.++.+.|+++|++||+|+.+.|+.|+.+|++|||+||+|.+.++|.+|++.. +-.|+|+...|.+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 3489999999999999999999999999999999999999999999999999999999998744 44677755555553
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=5.8e-11 Score=123.65 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=129.3
Q ss_pred CCCCcccccCccccccHHHHHHHHhhc-CCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHY-GVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDR 352 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~ 352 (775)
...+.+||.|||+++.|++|+++|... | .|+.|.|+.+ ..+++++||.|+|++.+.+++|++.||+..+ .++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvG--ev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~---~GR 114 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVG--EVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKYEV---NGR 114 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcC--ceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhccc---cCc
Confidence 344569999999999999999999754 5 8888988887 5799999999999999999999999998777 366
Q ss_pred CceecccCCCC---------------------------------------------CC----------------------
Q 004069 353 PAKVSFADSFI---------------------------------------------DP---------------------- 365 (775)
Q Consensus 353 ~l~v~~a~~~~---------------------------------------------~~---------------------- 365 (775)
+|.|.-..... ..
T Consensus 115 ~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~ 194 (608)
T KOG4212|consen 115 ELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNY 194 (608)
T ss_pred eEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhh
Confidence 66655321100 00
Q ss_pred -------------CccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 366 -------------GDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 366 -------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
.-...+...++||.||...+....|++.|.-.|+|+.|.+-.++. |.++|||.|+|..+-.|..||
T Consensus 195 ~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 195 NLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHH
Confidence 000111235799999999999999999999999999999988865 589999999999999999999
Q ss_pred HHhCCCccC
Q 004069 433 KSINNAELG 441 (775)
Q Consensus 433 ~~l~g~~~~ 441 (775)
..|++.-+.
T Consensus 274 sml~~~g~~ 282 (608)
T KOG4212|consen 274 SMLDRQGLF 282 (608)
T ss_pred HhhccCCCc
Confidence 999985543
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=7.4e-12 Score=121.76 Aligned_cols=82 Identities=32% Similarity=0.423 Sum_probs=78.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
+..+|.|.||+.++++.+|.+||..||.|..|.|.+++.||.++|||||.|.+.++|.+||..||+.-++...|.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC
Q 004069 275 DS 276 (775)
Q Consensus 275 ~~ 276 (775)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=1.1e-11 Score=102.02 Aligned_cols=66 Identities=26% Similarity=0.580 Sum_probs=61.5
Q ss_pred eecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 376 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
|||+|||+++++++|+++|..||.|..|.+..+.. +..+++|||+|.+.++|.+|+..+++..|.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999977 8999999999999999999999999999987
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=8.6e-12 Score=109.18 Aligned_cols=85 Identities=19% Similarity=0.367 Sum_probs=79.4
Q ss_pred HHHhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 189 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
+....+.++||||+||++.+++++|.++|+.+|.|..|.+=.|+.+....|||||+|.+.++|..||+.++++.++.+.|
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 004069 269 GVTPS 273 (775)
Q Consensus 269 ~V~~a 273 (775)
.|.+.
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 98875
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=9.8e-13 Score=121.96 Aligned_cols=112 Identities=21% Similarity=0.474 Sum_probs=87.0
Q ss_pred HHHHHHHcCCceeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCc
Q 004069 335 MDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKR 414 (775)
Q Consensus 335 ~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~ 414 (775)
.+.++.||...+.++ ..-.++|-..+... .-|||+|||+.+|+.||..+|++||.|++|.|++|..||++
T Consensus 7 vk~i~~lne~Elq~g--~~~~~SWH~~Ykds--------A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS 76 (219)
T KOG0126|consen 7 VKNIQKLNERELQLG--IADKKSWHQEYKDS--------AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS 76 (219)
T ss_pred HHHHHHhhHHhhccc--cccccchhhhcccc--------eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc
Confidence 444556666555432 22244554433332 67999999999999999999999999999999999999999
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeeccCC
Q 004069 415 KDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 415 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
+||||+.|++..+..-|+..|||..|.|+.+++.-...+..|
T Consensus 77 KGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 77 KGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred cceEEEEecCccceEEEEeccCCceecceeEEeeecccccCC
Confidence 999999999999999999999999999855444444444444
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=4.1e-12 Score=124.67 Aligned_cols=137 Identities=26% Similarity=0.455 Sum_probs=116.4
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC---
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ--- 274 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~--- 274 (775)
.|||++||+.+.+.+|..||..||.|..|.+. .+|+||.|.+..+|..|+..||+.+|.+..+.|.++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 59999999999999999999999999998875 5789999999999999999999999999887776653
Q ss_pred -----------------------CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCH
Q 004069 275 -----------------------DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331 (775)
Q Consensus 275 -----------------------~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~ 331 (775)
..+.|+|.||...+.+++|.++|..+| .+....+ ..+++||+|.+.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g--~~~~~~~---------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG--EVTYVDA---------RRNFAFVEFSEQ 143 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC--CCchhhh---------hccccceeehhh
Confidence 124688899999999999999999999 3322222 278899999999
Q ss_pred HHHHHHHHHHcCCceeccCCCCcee
Q 004069 332 SDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 332 e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
++|..|+..|++..+. ++.|.+
T Consensus 144 ~da~ra~~~l~~~~~~---~~~l~~ 165 (216)
T KOG0106|consen 144 EDAKRALEKLDGKKLN---GRRISV 165 (216)
T ss_pred hhhhhcchhccchhhc---Cceeee
Confidence 9999999999988774 454444
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.8e-11 Score=123.57 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=71.7
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
...++|+|.|||+...+-||+.+|.+||+|.+|.|+.+. .-+|||+||+|++.+||.+|-..|||..|.| ++|+|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG--RkIEVn 169 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG--RKIEVN 169 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec--eEEEEe
Confidence 345899999999999999999999999999999999883 5589999999999999999999999999997 556666
Q ss_pred eeccC
Q 004069 451 ARLSR 455 (775)
Q Consensus 451 ~~~~~ 455 (775)
.+..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 55544
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.23 E-value=2.8e-11 Score=99.65 Aligned_cols=70 Identities=34% Similarity=0.653 Sum_probs=64.6
Q ss_pred EEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 199 l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
|+|+|||+.+++++|.++|..||.|..+.+..+++ +..+++|||+|.+.++|.+|+..+++..|.|++|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999998999998873
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=9.1e-11 Score=123.54 Aligned_cols=173 Identities=28% Similarity=0.425 Sum_probs=126.9
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
.++|||+|||+.+|+++|.++|.+||.|..|.|..+..++.++|||||.|.+.+.|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999987643
Q ss_pred --CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 276 --SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 276 --~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
.......++ . ...+....
T Consensus 195 ~~~~~~~~~~~-------------------------~---------------------------~~~~~~~~-------- 214 (306)
T COG0724 195 ASQPRSELSNN-------------------------L---------------------------DASFAKKL-------- 214 (306)
T ss_pred ccccccccccc-------------------------c---------------------------chhhhccc--------
Confidence 000000000 0 00000000
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
.............+++.+++..++...+..+|..+|.|..+.+...........+.++.+.....+..++.
T Consensus 215 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 ---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00001111234789999999999999999999999999888877665544455555656666555555554
Q ss_pred HhCC
Q 004069 434 SINN 437 (775)
Q Consensus 434 ~l~g 437 (775)
.+..
T Consensus 286 ~~~~ 289 (306)
T COG0724 286 RGNK 289 (306)
T ss_pred cccc
Confidence 4333
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.22 E-value=3.5e-11 Score=121.25 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=64.5
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
.++|||+||++.+|+++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.+.+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEe
Confidence 47999999999999999999999999999999998853 47899999999999999995 999999875443333
No 80
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=3e-11 Score=106.59 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=76.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.....|||.++...+|+++|.+.|..||.|++|.|-.++.||-.+|||+|+|++...|++||..|||..|.+.. +.|.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~--v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN--VSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc--eeEE
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999754 5555
Q ss_pred eeccCCC
Q 004069 451 ARLSRPL 457 (775)
Q Consensus 451 ~~~~~~~ 457 (775)
..|.+++
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 5665543
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=3.6e-12 Score=118.26 Aligned_cols=80 Identities=31% Similarity=0.515 Sum_probs=76.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
.+..-|||+|||+++|+.+|.-+|++||.|+.|.+++|+.||+++||||+.|.+..+...|+..||+..|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999753
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.15 E-value=3.1e-11 Score=114.30 Aligned_cols=78 Identities=29% Similarity=0.503 Sum_probs=74.6
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
-++|.|-||.+-++.++|..+|++||.|.+|.|..+..|+.++|||||.|....+|+.||.+|++.+|+|+.|.|+.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999988754
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=5.5e-11 Score=118.83 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=73.7
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
=+||||.-|+.++++..|+..|..||+|..|.|+.++.||+++|||||+|.+..+...|.+..++..|+|+.|.|..
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999987754
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.14 E-value=8.5e-11 Score=123.98 Aligned_cols=70 Identities=17% Similarity=0.333 Sum_probs=63.9
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCccCCCcc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTH--DAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~--~~A~~A~~~l~g~~~~g~~~ 445 (775)
...+|||+||++.+|+++|..+|..||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..+.|+.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 447899999999999999999999999999999994 467 99999999987 78999999999999998553
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.3e-11 Score=114.86 Aligned_cols=85 Identities=27% Similarity=0.515 Sum_probs=78.7
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVR 450 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~ 450 (775)
.+.++|||++|...+|+.-|...|-+||.|+.|.|+.+..+++.+|||||+|.-.++|.+||..||+.+|.| .+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtir 83 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIR 83 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEE
Confidence 455899999999999999999999999999999999999999999999999999999999999999999987 6777
Q ss_pred eeccCCCCC
Q 004069 451 ARLSRPLQR 459 (775)
Q Consensus 451 ~~~~~~~~~ 459 (775)
+.+++|.+-
T Consensus 84 VN~AkP~ki 92 (298)
T KOG0111|consen 84 VNLAKPEKI 92 (298)
T ss_pred EeecCCccc
Confidence 788887543
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.14 E-value=9.9e-11 Score=118.02 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=70.1
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
.++|||+||++.+|+++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |++..|.|+.|.|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999998753 57899999999999999996 999999999999998753
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=7.5e-11 Score=109.26 Aligned_cols=74 Identities=31% Similarity=0.462 Sum_probs=68.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
-.++|||+||+..+++.+|..+|..||+|..|.|..+ ..|||||+|.++.+|..|+..|++..|+|..|.|.++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3677999999999999999999999999999999864 5899999999999999999999999999999988764
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.11 E-value=2.1e-10 Score=113.76 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=62.6
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
...+|||+||++.+|+++|++||+.||.|..|.|+++. ..++||||+|.+.++|..|+ .|||..|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 34799999999999999999999999999999999884 44689999999999999998 59999998754
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=7e-11 Score=104.33 Aligned_cols=80 Identities=23% Similarity=0.492 Sum_probs=77.0
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
.+...|||.++...+|+++|.+.|..||+|..|++-.+..||-.+|||+|+|.+.+.|++|+..||+..|.|+.|.|.||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999986
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.6e-10 Score=96.21 Aligned_cols=67 Identities=15% Similarity=0.383 Sum_probs=62.5
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
++.|||.|||+.+|.+++.++|.+||.|.+|+|-....| +|.|||.|++..+|++|+.+|+|..+.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCC
Confidence 478999999999999999999999999999999876544 8999999999999999999999999986
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.10 E-value=3.4e-10 Score=92.62 Aligned_cols=66 Identities=30% Similarity=0.670 Sum_probs=62.0
Q ss_pred ceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+|+|.|||..+++++|+++|.+||.|..+.+..+. +.++++|||+|.+.++|++|+..|++..|.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 58999999999999999999999999999999876 6788999999999999999999999999975
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.09 E-value=4.7e-10 Score=91.44 Aligned_cols=65 Identities=32% Similarity=0.629 Sum_probs=61.8
Q ss_pred cCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 378 VDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 378 V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
|+|||..+++++|+++|.+||.|..|.|..+..++.++++|||+|.+.++|..|+..|++..|.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 68999999999999999999999999999988888999999999999999999999999999976
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.07 E-value=2.1e-10 Score=121.08 Aligned_cols=77 Identities=25% Similarity=0.458 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccH--HHHHHHHHhhcCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATV--EQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~--e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..+|||+||++.+|+++|..+|..||.|..|.|++ .+| +|||||+|.+. .++.+||..||+..|.|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 46799999999999999999999999999999993 456 99999999987 7899999999999999999999988
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 543
No 94
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.1e-11 Score=134.98 Aligned_cols=218 Identities=18% Similarity=0.169 Sum_probs=174.3
Q ss_pred CccEEEEcCCCCCCcHH-HHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGD-DLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~-~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....+.+.|+-+..... .++..|..++.|..|++......-....++++.+.....++.|+. ..+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 44557788887777666 567889999999999997632222333388999999999998887 4666677777777665
Q ss_pred CC----------------CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHH
Q 004069 274 QD----------------SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDA 337 (775)
Q Consensus 274 ~~----------------~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~A 337 (775)
.. ..++||.||+..+.+.+|...|..++.+.++.+.+ ..+.++.+|.||+.|.....+.+|
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~---h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVI---HKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHH---HhhccccccceeeEeecCCchhhh
Confidence 22 14689999999999999999999999544444442 246788899999999999999999
Q ss_pred HHHHcCCceeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccE
Q 004069 338 FKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDF 417 (775)
Q Consensus 338 l~~l~~~~i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~ 417 (775)
+.......+ + ...|||.|+|+..|.+.|+.+|.++|.++.+.++..+ .|+++|.
T Consensus 726 V~f~d~~~~----g---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~ 779 (881)
T KOG0128|consen 726 VAFRDSCFF----G---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGK 779 (881)
T ss_pred hhhhhhhhh----h---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccc
Confidence 985544332 1 2689999999999999999999999999999987764 6899999
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 418 GFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 418 afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
|||.|.+..+|.+++..++...+..
T Consensus 780 a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 780 ARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred eeccCCCcchhhhhcccchhhhhhh
Confidence 9999999999999999888887764
No 95
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=2.7e-10 Score=115.32 Aligned_cols=76 Identities=26% Similarity=0.491 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...|+|.|||+..-+.||+.+|.+||+|.+|.||.+. ..+|||+||+|.+.++|.+|-.+||+++|.||+|.|..+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 3459999999999999999999999999999999864 568999999999999999999999999999999999877
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.04 E-value=6.6e-10 Score=90.92 Aligned_cols=71 Identities=35% Similarity=0.670 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
+|+|.|||..++.++|+++|.+||.|..+.++.+. +.++++|||+|.+.+.|..|+..|++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999998765 678899999999999999999999999999988876
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.04 E-value=4.6e-10 Score=111.33 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...+|||+||++.+|+++|++||+.||.|..|.|+.+. ...+||||+|.+.++|..||. |++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45789999999999999999999999999999999873 456899999999999999996 99999999999998764
Q ss_pred C
Q 004069 275 D 275 (775)
Q Consensus 275 ~ 275 (775)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 98
>smart00360 RRM RNA recognition motif.
Probab=99.00 E-value=9.9e-10 Score=89.48 Aligned_cols=70 Identities=39% Similarity=0.690 Sum_probs=65.9
Q ss_pred EcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 201 VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 201 V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
|+|||..+++++|+++|.+||.|..+.+..+..++.++++|||+|.+.+.|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6799999999999999999999999999988778899999999999999999999999999999988876
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.6e-09 Score=91.62 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=68.2
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...|||.|||+.+|.+++-++|.+||+|.+|+|=. +...+|.|||.|.+..+|++|+..|++..+.++.+.|..-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 45699999999999999999999999999999964 4567999999999999999999999999999999887654
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.9e-10 Score=106.99 Aligned_cols=83 Identities=22% Similarity=0.523 Sum_probs=79.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
...++|||++|..++|+.-|...|..||.|+.|.|..|..+++.+||+||+|...++|..||..||...|.|+.|+|+.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004069 274 QDS 276 (775)
Q Consensus 274 ~~~ 276 (775)
.+.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 665
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=4.4e-09 Score=86.49 Aligned_cols=67 Identities=33% Similarity=0.674 Sum_probs=62.3
Q ss_pred ceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+|+|.|||..+++++|+++|..||.|..+.+..+..+ .++++|||+|.+.++|..|+..+++..|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 5899999999999999999999999999999987654 678999999999999999999999998876
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=98.93 E-value=2.7e-09 Score=87.82 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=51.1
Q ss_pred HHHHHHHHh----ccCCEEEEE-EecCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 387 EDRVRELLK----NYGEITKIE-LARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 387 ~~~L~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
+++|+++|. +||.|..|. |+.+..+ +.++|||||+|.+.++|.+|+..|||+.|.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 578889998 999999995 7776666 89999999999999999999999999999873
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=3.4e-09 Score=111.54 Aligned_cols=72 Identities=31% Similarity=0.603 Sum_probs=69.0
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..+|||+|||..+|+++|.++|.+||.|..|.|..+..+++++|||||+|.+.++|..|+..|++..|.|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999998733
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.90 E-value=5.2e-09 Score=86.01 Aligned_cols=73 Identities=40% Similarity=0.696 Sum_probs=67.3
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
+|+|.|||..+++++|.++|..+|.|..+.+..+..+ ...++|||+|.+.+.|..|+..+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987654 678999999999999999999999999999988775
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.90 E-value=3.5e-09 Score=108.98 Aligned_cols=145 Identities=23% Similarity=0.331 Sum_probs=109.9
Q ss_pred ccEEEEcCCCCCCcHHHHHhhcccc----CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc-
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQV----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV- 270 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~----G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V- 270 (775)
...|.+++||+++|+.++..||..- |.++.|.+++.+ .|+..|-|||.|...+.|..||.+ |...|..+.|.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4568899999999999999999742 234556666543 488899999999999999999985 333333332222
Q ss_pred ------------------------------------cCCCCCCcccccCccccccHHHHHHHHhhcCCC-ceeeeEEeec
Q 004069 271 ------------------------------------TPSQDSDTLFLGNICKTWTKEALKEKLKHYGVD-NVEDLTLVED 313 (775)
Q Consensus 271 ------------------------------------~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~-~i~~i~l~~d 313 (775)
..+....+|.+.+||+..+.++|.++|..|-.. ....+.++.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~- 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL- 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE-
Confidence 222446789999999999999999999988631 222344443
Q ss_pred CCCCCCccceEEeecCCHHHHHHHHHHHcCC
Q 004069 314 SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (775)
Q Consensus 314 ~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~ 344 (775)
+..|++.|-|||+|.+.+.|..|.+..+++
T Consensus 318 -N~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 318 -NGQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -cCCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 578999999999999999999999877654
No 106
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.88 E-value=6.7e-09 Score=112.88 Aligned_cols=75 Identities=27% Similarity=0.466 Sum_probs=59.5
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
..|||.|||.+++...|+++|.+||.|+...|......++...||||+|.+.++++.||.+- -..|+ .+++.|..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig--~~kl~Vee 363 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG--GRKLNVEE 363 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC--CeeEEEEe
Confidence 45999999999999999999999999999888765434555599999999999999998855 44444 34444433
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=3.4e-09 Score=115.94 Aligned_cols=69 Identities=25% Similarity=0.490 Sum_probs=68.1
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+.|||+|||+++++++|..+|+..|.|..++++.|+.||+++|||||+|.+.++|..|++.|||.+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g 87 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG 87 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999987
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.9e-08 Score=108.37 Aligned_cols=164 Identities=19% Similarity=0.356 Sum_probs=116.9
Q ss_pred CCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccc---eEEeecCCHHHHHHHHHHHcCC--ceec-c
Q 004069 276 SDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG---FAFLEFSSRSDAMDAFKRLQKR--DVLF-G 349 (775)
Q Consensus 276 ~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg---~afVeF~s~e~A~~Al~~l~~~--~i~~-~ 349 (775)
+++|||++||+.++++.|...|..||...|.--. .........++| |+|+.|+++.....-+.+.... ...+ .
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~-k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPG-KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCC-CccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 4789999999999999999999999943222221 111122234566 9999999999888777654321 1111 0
Q ss_pred CCCCce---ec---c--cC-CCCCCCccccccccceecCCCCCCCCHHHHHHHHh-ccCCEEEEEEecCCCCCCcccEEE
Q 004069 350 VDRPAK---VS---F--AD-SFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLK-NYGEITKIELARNMPSAKRKDFGF 419 (775)
Q Consensus 350 ~~~~l~---v~---~--a~-~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~v~~v~i~~~~~~g~~~g~af 419 (775)
...+++ |+ | ++ .+.........+.+||||++||.-++.++|..+|. -||.|..|-|-.|++-+.++|-|=
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 011110 11 1 11 11122344556779999999999999999999999 799999999999988899999999
Q ss_pred EEeCCHHHHHHHHH----HhCCCcc
Q 004069 420 VTFDTHDAAVTCAK----SINNAEL 440 (775)
Q Consensus 420 V~F~~~~~A~~A~~----~l~g~~~ 440 (775)
|+|.+..+-.+||. .|+...|
T Consensus 418 VtFsnqqsYi~AIsarFvql~h~d~ 442 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISARFVQLDHTDI 442 (520)
T ss_pred eeecccHHHHHHHhhheEEEecccc
Confidence 99999999999987 4555555
No 109
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=4.1e-09 Score=100.77 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=70.4
Q ss_pred cceecCCCCCCCCHHHHHHHHhcc-CCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNY-GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
..++|..||..+.+..|..+|.+| |.|..+++.++..||+++|||||+|++.+.|.-|.+.||+..|.++.+.|+|
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 678999999999999999999999 7888888889999999999999999999999999999999999987666665
No 110
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.86 E-value=1e-08 Score=110.11 Aligned_cols=83 Identities=19% Similarity=0.438 Sum_probs=77.7
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
....++|||.+|...+...+|++||++||+|+-++|+++..+...++|+||++.+.++|.+||..||.+.|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44567899999999999999999999999999999999998888999999999999999999999999999999999987
Q ss_pred CCC
Q 004069 273 SQD 275 (775)
Q Consensus 273 a~~ 275 (775)
+++
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 743
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.83 E-value=4.5e-09 Score=114.97 Aligned_cols=79 Identities=33% Similarity=0.529 Sum_probs=76.6
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
++|||+|||+++++++|..+|...|.|..++++.|+.+|+++||||++|.+.+.|..|++.||+..+.|+.|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998743
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=7.6e-09 Score=113.64 Aligned_cols=158 Identities=23% Similarity=0.406 Sum_probs=121.8
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
...+||++||...++.++++++..||.+....++.+..++.++||||.+|.+......|+..||+..+.+++|.|..+-.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999888876511
Q ss_pred C------------------------------CcccccCcc--ccc-c-------HHHHHHHHhhcCCCceeeeEEeecC-
Q 004069 276 S------------------------------DTLFLGNIC--KTW-T-------KEALKEKLKHYGVDNVEDLTLVEDS- 314 (775)
Q Consensus 276 ~------------------------------~~l~V~nLp--~~~-t-------e~~L~~~F~~~G~~~i~~i~l~~d~- 314 (775)
. ..|++.|+- ... . .++++.-+.+|| .|..|.+.++.
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYP 446 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCC
Confidence 1 112222221 000 1 133455667788 67777776551
Q ss_pred -CCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecc
Q 004069 315 -NNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSF 358 (775)
Q Consensus 315 -~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~ 358 (775)
....-..|.-||+|.+.++|.+|++.|+|..+. ++.+...+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~---nRtVvtsY 488 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA---NRTVVASY 488 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeC---CcEEEEEe
Confidence 123445788899999999999999999999883 55554443
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-09 Score=111.58 Aligned_cols=81 Identities=26% Similarity=0.413 Sum_probs=77.1
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
.....|||..|.+-+|.++|.-+|+.||+|..|.|+++..||.+..||||+|.+.+++++|.-+|++..|..+.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 004069 274 Q 274 (775)
Q Consensus 274 ~ 274 (775)
+
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 4
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.3e-09 Score=108.07 Aligned_cols=81 Identities=14% Similarity=0.309 Sum_probs=73.3
Q ss_pred cccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
.++-+.|||..|.+-+|.++|.-+|+.||+|..|.|+++..||.+-.||||+|++.+++++|.-+|++..|.... +.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR--IHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR--IHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce--EEe
Confidence 345589999999999999999999999999999999999999999999999999999999999999999999643 444
Q ss_pred Eee
Q 004069 450 RAR 452 (775)
Q Consensus 450 ~~~ 452 (775)
.+.
T Consensus 314 DFS 316 (479)
T KOG0415|consen 314 DFS 316 (479)
T ss_pred ehh
Confidence 433
No 115
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.82 E-value=6.1e-09 Score=109.01 Aligned_cols=177 Identities=20% Similarity=0.274 Sum_probs=128.7
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
....++|++++.+.+.+.++..++...|.+..+.+.....+..++++++|.|...+.+..||.......+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35667999999999999999999999999888888887788899999999999999999999853322222222111100
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
..+..+. .+..
T Consensus 166 ---------------------------------~~~~~~~-----------------------------~n~~------- 176 (285)
T KOG4210|consen 166 ---------------------------------TRRGLRP-----------------------------KNKL------- 176 (285)
T ss_pred ---------------------------------ccccccc-----------------------------cchh-------
Confidence 0000000 0000
Q ss_pred ceecccCCCCCCCccccccc-cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQV-KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~-~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
... ..... +.++|++|++.++.++|+.+|..+|.|..+++...+.++..+|||||+|.....+..|+
T Consensus 177 ~~~------------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 177 SRL------------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccc------------ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 000 00111 34459999999999999999999999999999999999999999999999999999998
Q ss_pred HHhCCCccCCCcceEEEEeeccCC
Q 004069 433 KSINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 433 ~~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
.. +...+.+ +.+.+....+
T Consensus 245 ~~-~~~~~~~----~~~~~~~~~~ 263 (285)
T KOG4210|consen 245 ND-QTRSIGG----RPLRLEEDEP 263 (285)
T ss_pred hc-ccCcccC----cccccccCCC
Confidence 76 6766654 4444444443
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.79 E-value=2.5e-08 Score=78.07 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=43.7
Q ss_pred HHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 390 VRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 390 L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
|.++|++||.|..|.+..+. +++|||+|.+.++|..|+..|||..|.|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g 48 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNG 48 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 78999999999999998763 5899999999999999999999999987
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=1.7e-08 Score=83.02 Aligned_cols=61 Identities=21% Similarity=0.503 Sum_probs=54.8
Q ss_pred HHHHHhhcc----ccCceEEEE-EeecCCC--CCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 210 GDDLRKVFS----QVGEVTEVR-LMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 210 e~~L~~~f~----~~G~v~~v~-i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
+++|+++|. +||.|..|. |+.+..+ +.++|||||+|.+.++|.+|+..||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999996 7777666 889999999999999999999999999999999875
No 118
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.1e-07 Score=103.48 Aligned_cols=72 Identities=28% Similarity=0.448 Sum_probs=64.9
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
....+|+|-|||..+++++|..+|..||.|..|+.. -...+.+||+|-+..+|+.||+.|+...|.|+.|+.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 456789999999999999999999999999997654 345889999999999999999999999999998883
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.69 E-value=2.5e-08 Score=78.15 Aligned_cols=56 Identities=38% Similarity=0.703 Sum_probs=49.9
Q ss_pred HHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 213 LRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 213 L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
|.++|++||.|..+.+..+. .++|||+|.+.++|..|+..||+..|.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997542 689999999999999999999999999999998753
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.67 E-value=7.4e-08 Score=106.13 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=97.1
Q ss_pred ccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceeccc-
Q 004069 281 LGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFA- 359 (775)
Q Consensus 281 V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a- 359 (775)
+++.+++....+++++|... .+..+.|..+. ......|.++|.|.....+.+|++.-.--.+ .+.+.+.-+
T Consensus 316 ~~gm~fn~~~nd~rkfF~g~---~~~~~~l~~~~-v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~----~R~~q~~P~g 387 (944)
T KOG4307|consen 316 YKGMEFNNDFNDGRKFFPGR---NAQSTDLSENR-VAPPQTGRKTVMFTPQAPFQNAFTRNPSDDV----NRPFQTGPPG 387 (944)
T ss_pred ecccccccccchhhhhcCcc---cccccchhhhh-cCCCcCCceEEEecCcchHHHHHhcCchhhh----hcceeecCCC
Confidence 45566677778888887654 24444443331 1223378899999999999999874221111 222222211
Q ss_pred -------CCCCC--------C---------------C---ccccccccceecCCCCCCCCHHHHHHHHhccCCEEE-EEE
Q 004069 360 -------DSFID--------P---------------G---DEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITK-IEL 405 (775)
Q Consensus 360 -------~~~~~--------~---------------~---~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i 405 (775)
...+. . . ......+.+|||..||..++..++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 00000 0 0 011123479999999999999999999999888887 555
Q ss_pred ecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 004069 406 ARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAEL 440 (775)
Q Consensus 406 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~ 440 (775)
.+. .+++-++.|||.|...+++..|+..-+...+
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~ 501 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYP 501 (944)
T ss_pred ccC-Ccccccchhhheeccccccchhhhccccccc
Confidence 544 5788899999999999888888654444333
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.64 E-value=6e-09 Score=107.70 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=125.8
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCC---CCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT---KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~---g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
.|.|.||.+.+|.+++..||...|+|.++.|+.+... ......|||.|.+...+..|.. |.+++|-++.|.|.+..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 6999999999999999999999999999999864332 3456689999999998887766 88888888877765542
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCC-ceeccCCCC
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR-DVLFGVDRP 353 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~-~i~~~~~~~ 353 (775)
+. +. ... .+|..++..+++.-.|..+ | |.|.+... ...+.. ..++. .-.
T Consensus 88 ~~--------~~---p~r--~af~~l~~~navprll~pd----g-------~Lp~~~~l-----t~~nh~p~ailk-tP~ 137 (479)
T KOG4676|consen 88 DE--------VI---PDR--FAFVELADQNAVPRLLPPD----G-------VLPGDRPL-----TKINHSPNAILK-TPE 137 (479)
T ss_pred CC--------CC---ccH--HHHHhcCcccccccccCCC----C-------ccCCCCcc-----ccccCCccceec-CCC
Confidence 21 11 111 1444433212222222111 0 11111000 000000 00000 000
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
|...++. ..+..-..+|+|.+|+..|...+|.++|..+|.|....+.- +-..-+|.|+|........|+.
T Consensus 138 Lp~~~~A------~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 138 LPPQAAA------KKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred CChHhhh------hhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH
Confidence 1000000 01111227899999999999999999999999998777653 3346688899999999999966
Q ss_pred HhCCCccC
Q 004069 434 SINNAELG 441 (775)
Q Consensus 434 ~l~g~~~~ 441 (775)
++|..|.
T Consensus 208 -~~gre~k 214 (479)
T KOG4676|consen 208 -SHGRERK 214 (479)
T ss_pred -hcchhhh
Confidence 7888875
No 122
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=1.5e-08 Score=97.29 Aligned_cols=135 Identities=24% Similarity=0.316 Sum_probs=110.9
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..+||||.||-..++++-|.++|.+.|+|.+|.|..++. ++.+ ||||.|.+......|+..+|+..+.++.|.|.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~--- 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT--- 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc---
Confidence 456799999999999999999999999999999988755 3444 99999999999999999999999999999875
Q ss_pred CCCcccccC----ccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHc
Q 004069 275 DSDTLFLGN----ICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQ 342 (775)
Q Consensus 275 ~~~~l~V~n----Lp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~ 342 (775)
++.++ |...++.+.+...|...+ .+..+++..+ ..++++.++|+.+....+.-.++....
T Consensus 83 ----~r~G~shapld~r~~~ei~~~v~s~a~--p~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 83 ----LRCGNSHAPLDERVTEEILYEVFSQAG--PIEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ----cccCCCcchhhhhcchhhheeeecccC--CCCCcccccc--ccCCccCccchhhhhhhcCcHHhhhhc
Confidence 44555 667778888888999888 6777776555 447888999988876666666665444
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=6.3e-08 Score=110.14 Aligned_cols=161 Identities=17% Similarity=0.320 Sum_probs=127.4
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
..+.+||++||..++++.+|+..|..+| .+..|.|... ..++...|+||.|.+..++-.|...+.+..|..+ .
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~g--kve~VDiKtP--~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g---~ 442 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESG--KVEEVDIKTP--HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG---T 442 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhc--cccccccccC--CCCcccchhhhhhhccccCcccchhhcCCccccC---c
Confidence 3457999999999999999999999999 6666666544 2455578999999999999999888877666433 1
Q ss_pred ceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAK 433 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 433 (775)
+++.+... ....++.|+|++|..++....|...|..||.|..|.+-.. .-||+|.|++...|+.|+.
T Consensus 443 ~r~glG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 443 HRIGLGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccccccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHH
Confidence 22211111 2234589999999999999999999999999999988654 6799999999999999999
Q ss_pred HhCCCccCCCcceEEEEeeccCC
Q 004069 434 SINNAELGEGDNKAKVRARLSRP 456 (775)
Q Consensus 434 ~l~g~~~~g~~~~~~v~~~~~~~ 456 (775)
.|-|..|++.... +.+.++.+
T Consensus 510 ~~rgap~G~P~~r--~rvdla~~ 530 (975)
T KOG0112|consen 510 DMRGAPLGGPPRR--LRVDLASP 530 (975)
T ss_pred HHhcCcCCCCCcc--cccccccC
Confidence 9999999986655 44455443
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.56 E-value=7.6e-08 Score=107.68 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=82.9
Q ss_pred HHhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 190 ERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 190 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
.....-.+||||++|+..+++.+|..+|+.||.|..|.++. ++++|||++....+|.+||.+|++..+.++.|+
T Consensus 415 d~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik 488 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIK 488 (894)
T ss_pred cceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeE
Confidence 33445688999999999999999999999999999999974 488999999999999999999999999999999
Q ss_pred ccCCCCC-----------CcccccCccccccHHHHHHHHh
Q 004069 270 VTPSQDS-----------DTLFLGNICKTWTKEALKEKLK 298 (775)
Q Consensus 270 V~~a~~~-----------~~l~V~nLp~~~te~~L~~~F~ 298 (775)
|.|+... ..|=|.-||+..-..+|..++.
T Consensus 489 i~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 489 IAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred EeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 9998332 1233455566554444444443
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.54 E-value=1.2e-07 Score=90.81 Aligned_cols=77 Identities=27% Similarity=0.388 Sum_probs=70.8
Q ss_pred ccEEEEcCCCCCCcHHHHHhhcccc-CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQV-GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~-G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
...++|..||..+.+..|..+|.+| |.|+.+++-+++.||+++|||||+|.+.+.|+-|...||+..|.++.|.|..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 4458999999999999999999998 7888888889999999999999999999999999999999999998887654
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.50 E-value=6.9e-07 Score=98.69 Aligned_cols=69 Identities=10% Similarity=0.207 Sum_probs=60.5
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+.|-+.|+|+.++-+||.+||..|-.+-.-.+++-.+.|+..|-|.|-|++.++|.+|...|+++.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccc
Confidence 368899999999999999999999776554444544679999999999999999999999999999975
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=1.2e-08 Score=115.48 Aligned_cols=134 Identities=25% Similarity=0.360 Sum_probs=114.1
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
...++||.||+..+.+.+|...|..+|.|..+.|....+.++.+|+||+.|...++|.+||.....+.+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h---------
Confidence 345699999999999999999999999988888876677899999999999999999999996555443 3
Q ss_pred CCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcC
Q 004069 275 DSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (775)
Q Consensus 275 ~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~ 343 (775)
+..|||.|+|+..|++.|+.+|.++| ++..+.++. ...|+++|.|||.|.+..++.+++.....
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~g--n~~~~~~vt--~r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTG--NVTSLRLVT--VRAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccC--Cccccchhh--hhccccccceeccCCCcchhhhhcccchh
Confidence 34789999999999999999999999 666666543 46789999999999999999999865443
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.6e-07 Score=95.83 Aligned_cols=144 Identities=23% Similarity=0.361 Sum_probs=105.4
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCC---CCCCcc---eEEEEEccHHHHHHHHHhhcC----C-
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ---TKKNKG---FAFLRFATVEQARQAVTELKN----P- 261 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~---~g~~~g---~afV~F~s~e~A~~Al~~l~~----~- 261 (775)
..-.++|||++||++++++.|...|..||.+.. ....... --..+| |+|+.|.+...++..|.+... .
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 344667999999999999999999999998652 2221111 112455 999999999988887776532 1
Q ss_pred ------cccCcccccc---------------CCCCCCcccccCccccccHHHHHHHHh-hcCCCceeeeEEeecCCCCCC
Q 004069 262 ------VINGKQCGVT---------------PSQDSDTLFLGNICKTWTKEALKEKLK-HYGVDNVEDLTLVEDSNNEGM 319 (775)
Q Consensus 262 ------~~~gr~i~V~---------------~a~~~~~l~V~nLp~~~te~~L~~~F~-~~G~~~i~~i~l~~d~~~~g~ 319 (775)
.+..+.+.|. +....+||||++||.-++.++|..+|. -|| .|.-+.|-.| ..-+-
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG--gV~yaGIDtD-~k~KY 411 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG--GVLYVGIDTD-PKLKY 411 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcC--ceEEEEeccC-cccCC
Confidence 1122223331 115568999999999999999999998 788 5666666544 24566
Q ss_pred ccceEEeecCCHHHHHHHHHH
Q 004069 320 NRGFAFLEFSSRSDAMDAFKR 340 (775)
Q Consensus 320 ~kg~afVeF~s~e~A~~Al~~ 340 (775)
++|-|=|.|.+.++-.+|+.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 799999999999999999863
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.47 E-value=1.9e-07 Score=91.87 Aligned_cols=142 Identities=21% Similarity=0.333 Sum_probs=101.4
Q ss_pred HHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCCC-cccccc
Q 004069 294 KEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPG-DEIMAQ 372 (775)
Q Consensus 294 ~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~-~~~~~~ 372 (775)
...|..+- .+....++++ ..+...+++|+.|....+-.++...-+++.+- ..+++..-.....+.. .+....
T Consensus 117 ~~~f~~~p--~L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~---~~~VR~a~gtswedPsl~ew~~~ 189 (290)
T KOG0226|consen 117 PVVFSEYP--SLVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKKKIG---KPPVRLAAGTSWEDPSLAEWDED 189 (290)
T ss_pred hhhhccch--hhhhhhhhhc--CCCccCcccccCcchhhhhhhhcccccccccc---CcceeeccccccCCcccccCccc
Confidence 34444433 3334444443 35667899999998777766665544444331 1223332222222221 122233
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
-.+||.+.|...++.+.|-..|.+|-.....+++++.-||+++||+||-|.+.+++..|+..|||+.++.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999974
No 130
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.44 E-value=3.3e-07 Score=102.74 Aligned_cols=67 Identities=21% Similarity=0.441 Sum_probs=62.4
Q ss_pred cccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
...++||||++|+..+++.+|..+|+.||.|..|.++.+ ++||||++....+|.+|+.+|++..|..
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccc
Confidence 345689999999999999999999999999999999876 8999999999999999999999998876
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=1.4e-07 Score=107.30 Aligned_cols=166 Identities=18% Similarity=0.285 Sum_probs=133.7
Q ss_pred HHHhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 189 QERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 189 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
.........|||++||...+++.+|+..|..+|.|..|.|-+. ..+.-..|+||.|.+...+-.|+..+.+..|..-.+
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 3445556788999999999999999999999999999998664 235667799999999999999999888877754444
Q ss_pred ccc----CCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCC
Q 004069 269 GVT----PSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKR 344 (775)
Q Consensus 269 ~V~----~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~ 344 (775)
.+. .+...+.+++++|...+....|...|..|| .|..|.+-.. ..|++|++.+...+..|+..+.+.
T Consensus 444 r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fG--pir~Idy~hg-------q~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 444 RIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFG--PIRIIDYRHG-------QPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred cccccccccccceeeccCCCCCCChHHHHHHHhhccC--cceeeecccC-------CcceeeecccCccchhhHHHHhcC
Confidence 443 345667899999999999999999999999 5555655433 789999999999999999998887
Q ss_pred ceeccCCCCceecccCCCCCC
Q 004069 345 DVLFGVDRPAKVSFADSFIDP 365 (775)
Q Consensus 345 ~i~~~~~~~l~v~~a~~~~~~ 365 (775)
.+--. .+.+.|.|+......
T Consensus 515 p~G~P-~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 515 PLGGP-PRRLRVDLASPPGAT 534 (975)
T ss_pred cCCCC-CcccccccccCCCCC
Confidence 76433 566888888765433
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.42 E-value=4.8e-07 Score=97.53 Aligned_cols=72 Identities=24% Similarity=0.481 Sum_probs=67.0
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
..++|||.+|...+...+|+.||++||+|+-.+|+.+..+--.+.|+||++.+.++|.+||..||-++|.|.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 457899999999999999999999999999999999877777789999999999999999999999999873
No 133
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.38 E-value=8e-07 Score=86.82 Aligned_cols=77 Identities=18% Similarity=0.391 Sum_probs=66.1
Q ss_pred cccceecCCCCCCCCHHHHHH----HHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceE
Q 004069 372 QVKTVFVDGLPASWDEDRVRE----LLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKA 447 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~ 447 (775)
+..+|||.||+..+..++|+. +|++||.|..|...+ +.+.+|-|||.|.+.+.|-.|+..|+|..|.|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK---- 80 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGK---- 80 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCc----
Confidence 335999999999999999988 999999999988874 467899999999999999999999999999884
Q ss_pred EEEeeccC
Q 004069 448 KVRARLSR 455 (775)
Q Consensus 448 ~v~~~~~~ 455 (775)
.+++++++
T Consensus 81 ~mriqyA~ 88 (221)
T KOG4206|consen 81 PMRIQYAK 88 (221)
T ss_pred hhheeccc
Confidence 34444444
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=8e-07 Score=91.34 Aligned_cols=75 Identities=31% Similarity=0.515 Sum_probs=62.4
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccCCCcceEEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN-AELGEGDNKAKVR 450 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~~~~~v~ 450 (775)
.-++|||++|...+++.+|+++|-+||.|..|.++.. +++|||+|.+..+|+.|...+-+ ..|.| ..+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~ 296 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING----FRLK 296 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc----eEEE
Confidence 3479999999999999999999999999999999876 67999999999999999886554 44554 3444
Q ss_pred eeccCC
Q 004069 451 ARLSRP 456 (775)
Q Consensus 451 ~~~~~~ 456 (775)
+.|.++
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 557776
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=6.7e-07 Score=91.87 Aligned_cols=77 Identities=31% Similarity=0.536 Sum_probs=68.0
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhh-cCCcccCcccccc
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL-KNPVINGKQCGVT 271 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l-~~~~~~gr~i~V~ 271 (775)
+..-.+|||++|-..+++.+|+++|-+||.|..|.++.. +++|||+|.+.++|+.|..++ +..+|+|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 344668999999999999999999999999999999864 569999999999999998875 6678899999999
Q ss_pred CCCC
Q 004069 272 PSQD 275 (775)
Q Consensus 272 ~a~~ 275 (775)
|...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 8765
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=2.4e-07 Score=89.02 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=113.7
Q ss_pred CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCC
Q 004069 274 QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRP 353 (775)
Q Consensus 274 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~ 353 (775)
...++|||.|+...++++-|.++|-+.| .|..+.|... ..+..+ ||||.|.++....-|++.+++..+. +..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaG--PV~kv~ip~~--~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~---~~e 78 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAG--PVYKVGIPSG--QDQEQK-FAYVFFPNENSVQLAGQLENGDDLE---EDE 78 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccC--ceEEEeCCCC--ccCCCc-eeeeecccccchhhhhhhcccchhc---cch
Confidence 3456999999999999999999999999 6777777654 344445 9999999999999999999987764 555
Q ss_pred ceecccCCCCCCCccccccccceecCC----CCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHH
Q 004069 354 AKVSFADSFIDPGDEIMAQVKTVFVDG----LPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429 (775)
Q Consensus 354 l~v~~a~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 429 (775)
+++ +++-++ |...++.+.+...|+.-|.|..+++..+.. |+++.++||++-...+.-
T Consensus 79 ~q~------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 79 EQR------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred hhc------------------ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCc
Confidence 553 455555 667789999999999999999999998865 888999999988777777
Q ss_pred HHHHHhCCCcc
Q 004069 430 TCAKSINNAEL 440 (775)
Q Consensus 430 ~A~~~l~g~~~ 440 (775)
.|+....+..+
T Consensus 140 ~~~~~y~~l~~ 150 (267)
T KOG4454|consen 140 FALDLYQGLEL 150 (267)
T ss_pred HHhhhhcccCc
Confidence 77776666554
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.30 E-value=5.3e-06 Score=83.88 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=67.9
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
..+|.|.||+..|+..||+++|..||.+..+.|..++ +|.+.|.|-|.|...++|.+||+.+||..++|...++.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3789999999999999999999999988888887774 789999999999999999999999999989886644444
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.27 E-value=4e-06 Score=72.54 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=71.1
Q ss_pred cceecCCCCCCCCHHHHHHHHhcc--CCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNY--GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
++|.|.|||...|.++|.+++..+ |....+.|+.|..++.+.|||||-|.+++.|.+-...++|..+........+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988654 778889999999999999999999999999999999999999976544555555
Q ss_pred eccC
Q 004069 452 RLSR 455 (775)
Q Consensus 452 ~~~~ 455 (775)
.+++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=3.8e-06 Score=85.19 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=69.8
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAK 448 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~ 448 (775)
.....+||+|+.+.+|.++|..+|+.||.|..|.|+.+..++.++||+||+|.+...++.|+. ||+..|.+..+.++
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345899999999999999999999999999999999999999999999999999999999999 99999987544333
No 140
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.26 E-value=1e-05 Score=82.84 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=65.9
Q ss_pred cceecCCCCCCCCHHHHHHHHhccC--CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
-|+||+||-|.+|++||.+.+...| .|..++++.++.+|++||||+|...+.++.++.++.|-.++|.|..-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 6899999999999999999988777 57788999999999999999999999999999999999999988643
No 141
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.18 E-value=3.5e-06 Score=87.62 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=72.7
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEE--------EEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEIT--------KIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
....+|||.+||..++.++|.++|.++|.|. .|+|-++++|+++|+-|.|.|++...|++||..++++.|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3457999999999999999999999999886 47788899999999999999999999999999999999997
Q ss_pred CcceEEEEeeccCC
Q 004069 443 GDNKAKVRARLSRP 456 (775)
Q Consensus 443 ~~~~~~v~~~~~~~ 456 (775)
..++|.++..++
T Consensus 144 --n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 --NTIKVSLAERRT 155 (351)
T ss_pred --CCchhhhhhhcc
Confidence 445555544444
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.12 E-value=8.9e-06 Score=70.42 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCcHHHHHhhccc--cCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCccc
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQ--VGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~--~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (775)
+||+|+|||...|.++|.+++.. .|...-+-+..|..++.+.|||||.|.+++.|....+.+++..|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999988865 367778888899999999999999999999999999999988774
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.05 E-value=5.9e-06 Score=83.80 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=75.9
Q ss_pred HhccCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 191 RRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
+.......|||+|+.+.+|.++|..+|+.||.|..+.|..+..++..++||||+|.+.+.++.+|. |++..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445567789999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred cCC
Q 004069 271 TPS 273 (775)
Q Consensus 271 ~~a 273 (775)
.+.
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 754
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.02 E-value=9e-06 Score=82.20 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++|.|.||+..+++++|+++|.+||.+..+.|-.+ .+|.+.|.|-|.|...++|..|++.+++..++|+.+.+...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3467999999999999999999999998888887776 45899999999999999999999999999999999887654
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=3.9e-06 Score=91.63 Aligned_cols=71 Identities=28% Similarity=0.375 Sum_probs=62.9
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (775)
..+.+|+|.|||..|+.++|..+|+.||+|..|..-.. ..+.+||+|.+..+|++|++.||+.+|.+..++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34589999999999999999999999999999766444 489999999999999999999999999875544
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.86 E-value=1.5e-05 Score=87.09 Aligned_cols=75 Identities=25% Similarity=0.442 Sum_probs=61.1
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
..+|||.|||.+++..+|+++|.+||.|+...|....-.++..+||||+|.+..+++.||.+ +...|.+++|.|.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 34599999999999999999999999999988876432344449999999999999999996 4556666666554
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.85 E-value=1.6e-05 Score=78.58 Aligned_cols=78 Identities=21% Similarity=0.465 Sum_probs=72.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
..+.||.+.|..+++.+.|...|.+|-.....++++++.|++++||+||.|.+..++..|+..+++..++.+.|.+..
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 456799999999999999999999999999999999999999999999999999999999999999988888887654
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.81 E-value=2.8e-05 Score=86.68 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=71.3
Q ss_pred cccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 004069 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM---PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (775)
...+++|||+||++.++++.|...|..||.|..|+|+-.+ ...+.+.|+||-|-+..+|++|++.|+|..+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~---- 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME---- 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee----
Confidence 4567899999999999999999999999999999998654 235667899999999999999999999999965
Q ss_pred EEEEeeccCC
Q 004069 447 AKVRARLSRP 456 (775)
Q Consensus 447 ~~v~~~~~~~ 456 (775)
..+++.|.++
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 5666666654
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.74 E-value=7.2e-05 Score=77.19 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=66.2
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEE--------EEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITK--------IELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
+.|||.|||.++|.+++.++|++||.|.. |+|.++. .|+.+|=|+|.|--.+++.-|+..|++..|.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg--- 210 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG--- 210 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC---
Confidence 56999999999999999999999998863 6777775 49999999999999999999999999999986
Q ss_pred eEEEEeeccC
Q 004069 446 KAKVRARLSR 455 (775)
Q Consensus 446 ~~~v~~~~~~ 455 (775)
+.+++..++
T Consensus 211 -~~~rVerAk 219 (382)
T KOG1548|consen 211 -KKLRVERAK 219 (382)
T ss_pred -cEEEEehhh
Confidence 444444433
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.73 E-value=2.9e-05 Score=80.85 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=74.5
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceE--------EEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVT--------EVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~--------~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
....+|||.+||..+++++|.++|.+|+.|. .|.|.+++.|+..++-|.|.|.+...|+.||..+++..|++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456799999999999999999999999874 47788899999999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004069 266 KQCGVTPSQDS 276 (775)
Q Consensus 266 r~i~V~~a~~~ 276 (775)
..|+|.++...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 88888776444
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.72 E-value=6.1e-05 Score=66.86 Aligned_cols=59 Identities=22% Similarity=0.458 Sum_probs=40.4
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 438 (775)
+.|+|.++...++.++|+++|.+||.|..|.+.+. ...|||.|.+.++|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 56889999999999999999999999999999865 458999999999999999976655
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.66 E-value=3.2e-05 Score=76.63 Aligned_cols=74 Identities=26% Similarity=0.293 Sum_probs=62.6
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCC--------CCCcc----eEEEEEccHHHHHHHHHhhcCCc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT--------KKNKG----FAFLRFATVEQARQAVTELKNPV 262 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~--------g~~~g----~afV~F~s~e~A~~Al~~l~~~~ 262 (775)
..-.|||++||+.+.-.-|+++|.+||.|-.|.+.....+ +.+.. -++|+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5667999999999999999999999999999988765444 22222 37899999999999999999999
Q ss_pred ccCccc
Q 004069 263 INGKQC 268 (775)
Q Consensus 263 ~~gr~i 268 (775)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988763
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.64 E-value=2.2e-05 Score=82.45 Aligned_cols=146 Identities=17% Similarity=0.282 Sum_probs=112.0
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCcee
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
+.||++||...++..+|..+|..... ....-+++ . .+|+||...+..-|.+|++.|++..-+ .|+.+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~-k-------~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLV-K-------SGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceee-e-------cceeeccCCchhhhhhhHHhhchhhhh--cCceeec
Confidence 47899999999999999999987642 12222222 2 789999999999999999998886544 3566665
Q ss_pred cccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 004069 357 SFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (775)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (775)
...-+.. ...+++-|.|+|....|+.|..++.+||.|..|..+.- ..-....-|+|.+.+.++.||.+||
T Consensus 71 ~~sv~kk-------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 71 EHSVPKK-------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred cchhhHH-------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5443321 23367999999999999999999999999999987532 1113344578899999999999999
Q ss_pred CCccCCC
Q 004069 437 NAELGEG 443 (775)
Q Consensus 437 g~~~~g~ 443 (775)
|..|...
T Consensus 141 g~Q~en~ 147 (584)
T KOG2193|consen 141 GPQLENQ 147 (584)
T ss_pred chHhhhh
Confidence 9999753
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.55 E-value=0.00012 Score=81.81 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCC---CCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ---TKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~---~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
..++|+|+||+..++++.|...|..||+|..|+|+--.. ......++||.|-+..+|++|++.|++..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 345699999999999999999999999999999986432 24566789999999999999999999999988888887
Q ss_pred CC
Q 004069 272 PS 273 (775)
Q Consensus 272 ~a 273 (775)
|.
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 76
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.48 E-value=0.00029 Score=58.13 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCcHHH----HHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 197 FEVFVGGLDKDVVGDD----LRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~----L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
..|+|.|||...+... |++++..|| +|..|. .+.|+|.|.+.+.|.+|++.|++..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4599999999888765 556677786 566542 4679999999999999999999999999999998
Q ss_pred CCCCC
Q 004069 272 PSQDS 276 (775)
Q Consensus 272 ~a~~~ 276 (775)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 76443
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.42 E-value=0.00049 Score=56.82 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=43.1
Q ss_pred cceecCCCCCCCCHH----HHHHHHhccC-CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 374 KTVFVDGLPASWDED----RVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~----~L~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
..|+|.|||.+.+.. -|++++..|| +|..|. .+.|+|.|.+++.|.+|++.|+|..+.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccce
Confidence 568999999988764 5667777886 675552 579999999999999999999999998743
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.34 E-value=0.00016 Score=74.38 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=70.9
Q ss_pred hccCccEEEEcCCCCCCcHHHHHhhccccC--ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 192 RKRKEFEVFVGGLDKDVVGDDLRKVFSQVG--EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 192 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G--~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
......++||+||-|.+|+++|.+.+...| .|.+++++.+..+|+++|||+|...+..+.++.+..|-...|+|+.-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 344567899999999999999999998877 578889999999999999999999999999999999998889888765
Q ss_pred ccC
Q 004069 270 VTP 272 (775)
Q Consensus 270 V~~ 272 (775)
|..
T Consensus 156 V~~ 158 (498)
T KOG4849|consen 156 VLS 158 (498)
T ss_pred eec
Confidence 543
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.33 E-value=6.2e-05 Score=79.17 Aligned_cols=145 Identities=24% Similarity=0.375 Sum_probs=109.9
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCc-eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCC-cccCccccccCC--
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP-VINGKQCGVTPS-- 273 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~-~~~gr~i~V~~a-- 273 (775)
.++|+||...++..+|..+|...-. ...-.++ ..||+||.+.+...|.+|++.|++. .+.|+.+.|...
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4899999999999999999976421 1111111 2589999999999999999999876 578999988766
Q ss_pred --CCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCC
Q 004069 274 --QDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351 (775)
Q Consensus 274 --~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~ 351 (775)
..++.+.|.|+|....|+-|..++..+| .+..|..+... .-.-..-|++.+.+.+..|+..|++..+. .
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt~----~etavvnvty~~~~~~~~ai~kl~g~Q~e---n 146 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNTD----SETAVVNVTYSAQQQHRQAIHKLNGPQLE---N 146 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhccc----hHHHHHHHHHHHHHHHHHHHHhhcchHhh---h
Confidence 4457899999999999999999999999 66666654221 11222346788999999999999887763 3
Q ss_pred CCceecc
Q 004069 352 RPAKVSF 358 (775)
Q Consensus 352 ~~l~v~~ 358 (775)
..+++.+
T Consensus 147 ~~~k~~Y 153 (584)
T KOG2193|consen 147 QHLKVGY 153 (584)
T ss_pred hhhhccc
Confidence 4444444
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00055 Score=74.90 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=59.3
Q ss_pred cceecCCCCCCCC------HHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 374 KTVFVDGLPASWD------EDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 374 ~~l~V~nLp~~~t------~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
++|+|.|+|.--. ..-|..+|+++|+|+.+.++.+..+| .+||.|++|.+..+|+.|++.|||+.|+-
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 7899999985422 24677899999999999999887766 89999999999999999999999999964
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.10 E-value=0.00062 Score=69.81 Aligned_cols=102 Identities=19% Similarity=0.387 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCcHHH----H--HhhccccCceEEEEEeecCCCC-CCcce--EEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 198 EVFVGGLDKDVVGDD----L--RKVFSQVGEVTEVRLMMNPQTK-KNKGF--AFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 198 ~l~V~nLp~~~te~~----L--~~~f~~~G~v~~v~i~~d~~~g-~~~g~--afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
-|||-+|++.+..++ | .++|.+||+|..|.|-+...+. ...+. .||+|.+.++|..||...++..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 389999998877665 2 3799999999988876543111 12222 3999999999999999999999999999
Q ss_pred cccCC--------------CCCCcccccCc---cccccHHHHHHHHhh
Q 004069 269 GVTPS--------------QDSDTLFLGNI---CKTWTKEALKEKLKH 299 (775)
Q Consensus 269 ~V~~a--------------~~~~~l~V~nL---p~~~te~~L~~~F~~ 299 (775)
+...- ....+.|+..- ....|+++|...-.+
T Consensus 196 katYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh~ 243 (480)
T COG5175 196 KATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQHK 243 (480)
T ss_pred eeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhhhh
Confidence 88654 33344444332 233577777665443
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.08 E-value=0.0026 Score=67.73 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=58.5
Q ss_pred ccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecC---CCCCC----------cccEEEEEeCCHHHHHHHHHHhCC
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARN---MPSAK----------RKDFGFVTFDTHDAAVTCAKSINN 437 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~---~~~g~----------~~g~afV~F~~~~~A~~A~~~l~g 437 (775)
.+.++|.+-|||.+-.-+.|.+||..||.|..|+|... +.+.+ .+-+|||+|+....|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35689999999999888999999999999999999876 33321 256799999999999999998865
Q ss_pred Ccc
Q 004069 438 AEL 440 (775)
Q Consensus 438 ~~~ 440 (775)
...
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 443
No 162
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.06 E-value=0.00089 Score=59.47 Aligned_cols=59 Identities=31% Similarity=0.465 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCC
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNP 261 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~ 261 (775)
+.|+|.++...++-++|+++|.+||.|..|.+... ...|||.|.+.+.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 56899999999999999999999999999988653 346999999999999999987544
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.90 E-value=0.0016 Score=50.02 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=42.0
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
+.|-|.+.+.... +.|..+|..||.|+.+.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4577888886655 455668889999999998733 569999999999999985
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.88 E-value=0.0006 Score=67.87 Aligned_cols=71 Identities=28% Similarity=0.467 Sum_probs=61.3
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCC--------CCccc----EEEEEeCCHHHHHHHHHHhCCCccC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS--------AKRKD----FGFVTFDTHDAAVTCAKSINNAELG 441 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~--------g~~~g----~afV~F~~~~~A~~A~~~l~g~~~~ 441 (775)
-.|||++||+......|+++|..||.|-.|.|.....+ |.+.. -|+|+|.+-..|..+...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 67999999999999999999999999999999876554 22222 3789999999999999999999998
Q ss_pred CCc
Q 004069 442 EGD 444 (775)
Q Consensus 442 g~~ 444 (775)
|..
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 853
No 165
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.80 E-value=0.0036 Score=69.16 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=59.1
Q ss_pred ccCccEEEEcCCCCCCcHHHHHhhcc-ccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcc---cCccc
Q 004069 193 KRKEFEVFVGGLDKDVVGDDLRKVFS-QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVI---NGKQC 268 (775)
Q Consensus 193 ~~~~~~l~V~nLp~~~te~~L~~~f~-~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~---~gr~i 268 (775)
......|+|.||--.+|.-+|+.++. .+|.|+.. ++|+ -+..|||.|.+.+.|...+.+|||..| +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34567899999999999999999998 56666666 3343 366799999999999999999999876 45555
Q ss_pred cccCC
Q 004069 269 GVTPS 273 (775)
Q Consensus 269 ~V~~a 273 (775)
.|.+.
T Consensus 515 ~adf~ 519 (718)
T KOG2416|consen 515 IADFV 519 (718)
T ss_pred Eeeec
Confidence 55443
No 166
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.56 E-value=0.0016 Score=68.52 Aligned_cols=78 Identities=29% Similarity=0.545 Sum_probs=70.7
Q ss_pred ccEEE-EcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCC
Q 004069 196 EFEVF-VGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQ 274 (775)
Q Consensus 196 ~~~l~-V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~ 274 (775)
..+++ |.+|++.++.++|+.+|..+|.|+.+++..+..++..++||||.|.+...+..++.. +...+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44455 999999999999999999999999999999999999999999999999999999997 7888888888887653
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.43 E-value=0.0042 Score=62.08 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCceeccCCCCceecccCCCCCCCccccccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCC
Q 004069 332 SDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS 411 (775)
Q Consensus 332 e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~ 411 (775)
.-|..|...|.+... .++.+.|.|+.. ..|+|.||...++.+.|...|+.||.|....++.| ..
T Consensus 5 t~ae~ak~eLd~~~~---~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP---KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DR 68 (275)
T ss_pred cHHHHHHHhcCCCCC---CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cc
Confidence 345666666766544 588999999865 78999999999999999999999999987666655 35
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 412 AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 412 g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
++..+-++|+|...-.|.+|+..++-.-|.+
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 7889999999999999999999886555554
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.40 E-value=0.0073 Score=46.37 Aligned_cols=52 Identities=19% Similarity=0.450 Sum_probs=42.3
Q ss_pred cEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHH
Q 004069 197 FEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAV 255 (775)
Q Consensus 197 ~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al 255 (775)
+.|-|.+.+....+.-|. +|.+||.|+.+.+. ....+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 468899999777765554 88899999998885 23558999999999999986
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.36 E-value=0.0062 Score=62.68 Aligned_cols=77 Identities=25% Similarity=0.457 Sum_probs=57.5
Q ss_pred cccceecCCCCCCCCHHH----H--HHHHhccCCEEEEEEecCCCCCCc-ccE--EEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDR----V--RELLKNYGEITKIELARNMPSAKR-KDF--GFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~----L--~~~f~~~G~v~~v~i~~~~~~g~~-~g~--afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
+.+-|||-+|+..+-.++ | .++|.+||+|..|.|-+......+ .+. .||+|.+.++|.+||..++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 337799999998876655 3 369999999998887654322111 122 3999999999999999999999998
Q ss_pred CcceEE
Q 004069 443 GDNKAK 448 (775)
Q Consensus 443 ~~~~~~ 448 (775)
+.+++.
T Consensus 193 r~lkat 198 (480)
T COG5175 193 RVLKAT 198 (480)
T ss_pred ceEeee
Confidence 554433
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.31 E-value=0.011 Score=51.78 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=47.2
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEE-EecCC------CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIE-LARNM------PSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~-i~~~~------~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
+-|.|-+.|.. ....|.++|++||.|+... +.++. .......+..|+|.+..+|++||. .||..|.|.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 56888899987 5677889999999998775 11100 001236799999999999999976 899999864
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.0055 Score=67.35 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=58.5
Q ss_pred cCccEEEEcCCCCCCc------HHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 194 RKEFEVFVGGLDKDVV------GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~t------e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
.....|+|.|+|.--. ..-|.++|+++|+|+.+.+..+..+| ++||.|++|.+..+|+.|++.|||..|+-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3445699999996422 34467899999999999998886655 99999999999999999999999987753
No 172
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=96.13 E-value=0.012 Score=69.08 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=24.6
Q ss_pred CCcceEEEEEccHHHHHHHHHhhcCCccc
Q 004069 236 KNKGFAFLRFATVEQARQAVTELKNPVIN 264 (775)
Q Consensus 236 ~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (775)
..+||.||+-.....++.||+-+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 46899999999999999999988765554
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.09 E-value=0.012 Score=59.55 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=47.6
Q ss_pred HHHHHHHHhccCCEEEEEEecCCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 387 EDRVRELLKNYGEITKIELARNMPSAKR-KDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 387 ~~~L~~~f~~~G~v~~v~i~~~~~~g~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+++++..+.+||.|..|.|...+..-.. .--.||+|...++|.+|+-.|||+.|+|+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 3578899999999999999877533222 235799999999999999999999998844
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.06 E-value=0.0053 Score=64.56 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=56.5
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPS---AKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..|.|.||.+++|.++|..||...|+|..+.|+-+... ....-.|||.|.+...+..|+. |.++.|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence 47899999999999999999999999999998764322 3445689999999999999955 66666655
No 175
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.79 E-value=0.048 Score=63.67 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=12.8
Q ss_pred CCcceEEEEEccHHHHHHHHH
Q 004069 236 KNKGFAFLRFATVEQARQAVT 256 (775)
Q Consensus 236 ~~~g~afV~F~s~e~A~~Al~ 256 (775)
.++.|+-|-|.+..--..++.
T Consensus 468 ~prpyg~i~fctvgvllr~~e 488 (1282)
T KOG0921|consen 468 TPRPYGSIMFCTVGVLLRMME 488 (1282)
T ss_pred ccccccceeeeccchhhhhhh
Confidence 345566666777666665554
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.73 E-value=0.014 Score=58.40 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=77.4
Q ss_pred HHHHHHHHhhcCCcccCccccccCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeec
Q 004069 249 EQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEF 328 (775)
Q Consensus 249 e~A~~Al~~l~~~~~~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF 328 (775)
.-|..|-..|++....++.+.|.++.. ..|+|.||..-+..+.|.+.|..|| .|....++.+ ..++..+-++|.|
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg--~~e~av~~vD--~r~k~t~eg~v~~ 79 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFG--PIERAVAKVD--DRGKPTREGIVEF 79 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcC--ccchheeeec--ccccccccchhhh
Confidence 346677777999999999999999988 8999999999999999999999999 5655555544 4678889999999
Q ss_pred CCHHHHHHHHHHHcCC
Q 004069 329 SSRSDAMDAFKRLQKR 344 (775)
Q Consensus 329 ~s~e~A~~Al~~l~~~ 344 (775)
...-.|.+|+..+...
T Consensus 80 ~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 80 AKKPNARKAARRCREG 95 (275)
T ss_pred hcchhHHHHHHHhccC
Confidence 9999999999877543
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.53 E-value=0.0087 Score=66.24 Aligned_cols=73 Identities=15% Similarity=0.329 Sum_probs=60.1
Q ss_pred ccccceecCCCCCCCCHHHHHHHHh-ccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 371 AQVKTVFVDGLPASWDEDRVRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 371 ~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
..++.|+|.||-.-+|.-+|+.++. ..|.|+.++|-+- +-.|||.|.+.++|...+.+|||..+..++-++.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3458999999999999999999998 5677777654333 77999999999999999999999988766554443
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.14 E-value=0.024 Score=60.66 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=55.8
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeec---CCC--CC--------CcceEEEEEccHHHHHHHHHhhcC
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMN---PQT--KK--------NKGFAFLRFATVEQARQAVTELKN 260 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d---~~~--g~--------~~g~afV~F~s~e~A~~Al~~l~~ 260 (775)
..++|.+.|||.+-..+.|.++|..||.|..|+|+.- +.. +. .+-+|||+|.+.+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5678999999999999999999999999999999876 222 11 245799999999999999997754
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.13 E-value=0.056 Score=47.32 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=48.3
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecC-------CCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNP-------QTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~-------~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
...|.|=+.|.. ....|.++|++||.|++..-+... ..........|+|.++.+|.+||. .|+.+|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 455888899988 556788899999999887511000 001235689999999999999999 58888887544
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.70 E-value=0.056 Score=55.02 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=51.9
Q ss_pred HHHHHhhccccCceEEEEEeecCCCCCC-cceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 210 GDDLRKVFSQVGEVTEVRLMMNPQTKKN-KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 210 e~~L~~~f~~~G~v~~v~i~~d~~~g~~-~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
+.++++.+.+||+|..|.|+..+..... .--.||+|...++|.+|+-.||+..|.|+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4567889999999999999877543222 23479999999999999999999999999987654
No 181
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=94.65 E-value=0.016 Score=62.62 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=3.0
Q ss_pred EEEcCC
Q 004069 199 VFVGGL 204 (775)
Q Consensus 199 l~V~nL 204 (775)
+|.-..
T Consensus 124 ~WtP~~ 129 (458)
T PF10446_consen 124 FWTPGA 129 (458)
T ss_pred eecccc
Confidence 555444
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.60 E-value=0.076 Score=49.39 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 388 DRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 388 ~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
.+|.+.|..||.|.-|+++. +.-+|+|.+-..|.+|+. |+|.+|.|..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 47888899999999888874 488999999999999976 9999998733
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.49 E-value=0.021 Score=57.35 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=47.8
Q ss_pred HHHHHHHh-ccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 388 DRVRELLK-NYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 388 ~~L~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
++|...|. +||.|+.+.|..+.. -.-.|-++|.|...++|++|+..|||..|.|..+.+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 56666666 999999997765532 23478899999999999999999999999985544443
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.90 E-value=0.02 Score=57.53 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=50.2
Q ss_pred HHHHhhcc-ccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 211 DDLRKVFS-QVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 211 ~~L~~~f~-~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
++|...|. +||.|..++|..+.. -...|.+||.|...++|++|+..||+.-|.|++|....+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444454 899999998876643 456788999999999999999999999999999876543
No 185
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.77 E-value=0.12 Score=57.05 Aligned_cols=88 Identities=23% Similarity=0.271 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCcccCccccccCCCCCCcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEee
Q 004069 248 VEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLE 327 (775)
Q Consensus 248 ~e~A~~Al~~l~~~~~~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVe 327 (775)
.+-...+|..+-+..++.+-.+|.+....+.|+|..||.+.-.++|+.||....--.+.+|.+..+ .-+||+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyIT 218 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYIT 218 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEE
Confidence 444566777777888899999999999999999999999999999999998754446777777644 348999
Q ss_pred cCCHHHHHHHHHHHcC
Q 004069 328 FSSRSDAMDAFKRLQK 343 (775)
Q Consensus 328 F~s~e~A~~Al~~l~~ 343 (775)
|.+..+|..|++.|..
T Consensus 219 fesd~DAQqAykylre 234 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLRE 234 (684)
T ss_pred eecchhHHHHHHHHHH
Confidence 9999999999886643
No 186
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.66 Score=51.92 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=69.9
Q ss_pred cCccEEEEcCCCCC-CcHHHHHhhcccc----CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccc
Q 004069 194 RKEFEVFVGGLDKD-VVGDDLRKVFSQV----GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQC 268 (775)
Q Consensus 194 ~~~~~l~V~nLp~~-~te~~L~~~f~~~----G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i 268 (775)
.....|-|.||-|+ +...+|.-+|+.| |.|..|.|+...- | ...|....++|-.+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-G-------------------keRM~eEeV~GP~~ 231 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-G-------------------KERMKEEEVHGPPK 231 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-h-------------------HHHhhhhcccCChh
Confidence 44566999999997 5678899888876 5899999875311 1 11233333444333
Q ss_pred cccCCCCCCcccccCcccc---ccH--HHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcC
Q 004069 269 GVTPSQDSDTLFLGNICKT---WTK--EALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQK 343 (775)
Q Consensus 269 ~V~~a~~~~~l~V~nLp~~---~te--~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~ 343 (775)
.+... +.+-+.. ++. .-....+.+|+ +..++ --||.|+|.+...|......+.|
T Consensus 232 el~~~-------~e~~~~s~sD~ee~~~~~~~kLR~Yq---~~rLk-----------YYyAVvecDsi~tA~~vYe~CDG 290 (650)
T KOG2318|consen 232 ELFKP-------VEEYKESESDDEEEEDVDREKLRQYQ---LNRLK-----------YYYAVVECDSIETAKAVYEECDG 290 (650)
T ss_pred hhccc-------cccCcccccchhhhhhHHHHHHHHHH---hhhhe-----------eEEEEEEecCchHHHHHHHhcCc
Confidence 22110 0011111 111 11244444553 22222 34789999999999999998888
Q ss_pred CceeccCCCCceeccc
Q 004069 344 RDVLFGVDRPAKVSFA 359 (775)
Q Consensus 344 ~~i~~~~~~~l~v~~a 359 (775)
..+... +..+-+.|.
T Consensus 291 ~EfEsS-~~~~DLRFI 305 (650)
T KOG2318|consen 291 IEFESS-ANKLDLRFI 305 (650)
T ss_pred ceeccc-cceeeeeec
Confidence 776422 334444443
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.56 E-value=0.22 Score=41.46 Aligned_cols=55 Identities=20% Similarity=0.477 Sum_probs=40.8
Q ss_pred ceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 004069 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINN 437 (775)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 437 (775)
-||--.+|..+...||.++|+.||.|. |..+.+ .-|||.....+.|..|+..++-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 344444999999999999999999985 444433 4899999999999999988864
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.47 E-value=0.26 Score=38.89 Aligned_cols=53 Identities=19% Similarity=0.376 Sum_probs=43.7
Q ss_pred cceecCCCCCCCCHHHHHHHHhcc----CCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNY----GEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSI 435 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 435 (775)
..|+|.+|. +++.++|+.+|..| + ...|..+.| --|=|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 679999985 58889999999999 4 446766665 37899999999999999765
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.33 E-value=0.18 Score=49.40 Aligned_cols=74 Identities=9% Similarity=0.141 Sum_probs=47.3
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccc-cCce---EEEEEeecCCC--CCCcceEEEEEccHHHHHHHHHhhcCCcccCcc
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQ-VGEV---TEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVINGKQ 267 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~-~G~v---~~v~i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~ 267 (775)
...++|.|++||+.+|++++.+.+.. ++.. ..+.-...... .....-|||.|.+.+++...+..+++..|.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34557999999999999999998877 6554 23331122111 223456999999999999999999998775544
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.28 E-value=0.19 Score=46.74 Aligned_cols=69 Identities=25% Similarity=0.326 Sum_probs=50.6
Q ss_pred CccEEEEcCCCCC-----CcH----HHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 195 KEFEVFVGGLDKD-----VVG----DDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 195 ~~~~l~V~nLp~~-----~te----~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
...||.|.=+... .-. .+|.+.|.+||.|+=|+++.+ .-+|+|.+-+.|.+|+. +++..++|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 4456666655511 122 367788999999888887743 48999999999999999 89999999
Q ss_pred ccccccC
Q 004069 266 KQCGVTP 272 (775)
Q Consensus 266 r~i~V~~ 272 (775)
+.|.|..
T Consensus 97 ~~l~i~L 103 (146)
T PF08952_consen 97 RTLKIRL 103 (146)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9998764
No 191
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=92.28 E-value=0.79 Score=54.08 Aligned_cols=27 Identities=37% Similarity=0.781 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCC
Q 004069 712 SRQGMGYGGSYSGGDVGGMYSSSYGSDY 739 (775)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (775)
...|+|+||+|+|-..|| |=-+-|++|
T Consensus 1217 ~~~Gagvg~GyrGvsrgG-frnnggGdy 1243 (1282)
T KOG0921|consen 1217 ANYGAGVGNGYRGVSRGG-FRNNGGGDY 1243 (1282)
T ss_pred CCccccccCCCccccCCc-cccCCCCCC
Confidence 344555666665555333 333556666
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.72 E-value=1.1 Score=40.11 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=50.9
Q ss_pred cceecCCCCCCCCHHHHHHHHhccC-CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..+.+...|..++-++|..+...+- .|..++|+++. ..++--++|+|.+..+|..-....||+.|..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555566677777877766664 57788888873 2356678999999999999999999999875
No 193
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.65 E-value=0.19 Score=61.36 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=10.1
Q ss_pred CcHHHHHhhccccC
Q 004069 208 VVGDDLRKVFSQVG 221 (775)
Q Consensus 208 ~te~~L~~~f~~~G 221 (775)
.+.++|.+++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 46678888887664
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.26 E-value=0.35 Score=52.79 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=51.4
Q ss_pred cccceecCCCCCC-CCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 372 QVKTVFVDGLPAS-WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 372 ~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+.+.|-+.-.|.. -|-.+|..+|.+||.|..|.|-.. .-.|.|+|.+..+|-.|. ..++..|+++-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~ 437 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRF 437 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCce
Confidence 3355666666766 456899999999999999998655 458999999999998884 47788887633
No 195
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.18 E-value=1.8 Score=51.24 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHhccC-----CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcc
Q 004069 384 SWDEDRVRELLKNYG-----EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDN 445 (775)
Q Consensus 384 ~~t~~~L~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~ 445 (775)
.++..+|..++..-+ .|-.|.|..+ |.||+-... .|...+..|++..+.|..+
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~ 555 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPM 555 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCce
Confidence 477777777776554 3456777644 999998654 4777888899999987543
No 196
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.00 E-value=0.18 Score=61.43 Aligned_cols=8 Identities=25% Similarity=0.659 Sum_probs=3.7
Q ss_pred HHHhhccc
Q 004069 212 DLRKVFSQ 219 (775)
Q Consensus 212 ~L~~~f~~ 219 (775)
.|.++|..
T Consensus 740 ~La~~Fk~ 747 (784)
T PF04931_consen 740 QLAAIFKE 747 (784)
T ss_pred HHHHHHHH
Confidence 44445543
No 197
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.96 E-value=0.8 Score=36.23 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCcHHHHHhhcccc---CceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhh
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQV---GEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~---G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l 258 (775)
.|+|.+|. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 49999985 57788999999988 134566666553 3889999999999999864
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.84 E-value=1.2 Score=37.32 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=39.2
Q ss_pred EEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc
Q 004069 199 VFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK 259 (775)
Q Consensus 199 l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~ 259 (775)
||--.+|..+...+|.++|+.||.|.- ..+- -..|||.+...+.|..++..+.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~V-sWi~-------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYV-SWIN-------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEE-EEEC-------TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEE-EEEc-------CCcEEEEeecHHHHHHHHHHhc
Confidence 444449999999999999999998874 4433 2369999999999999998765
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.40 E-value=0.28 Score=51.53 Aligned_cols=76 Identities=17% Similarity=0.346 Sum_probs=58.9
Q ss_pred EEEEcCCCCCCcHHHHH---hhccccCceEEEEEeecCC--C-CCCcceEEEEEccHHHHHHHHHhhcCCcccCcccccc
Q 004069 198 EVFVGGLDKDVVGDDLR---KVFSQVGEVTEVRLMMNPQ--T-KKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVT 271 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~---~~f~~~G~v~~v~i~~d~~--~-g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~ 271 (775)
-+||-+|+.....+.+. +.|.+||.|..|.+..+.. . -..-.-++|+|...++|..||...++.+++|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 37888888776655543 5799999999999887652 1 1122238999999999999999999999999987765
Q ss_pred CC
Q 004069 272 PS 273 (775)
Q Consensus 272 ~a 273 (775)
..
T Consensus 159 ~g 160 (327)
T KOG2068|consen 159 LG 160 (327)
T ss_pred hC
Confidence 44
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.24 E-value=0.48 Score=46.37 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=47.0
Q ss_pred ccceecCCCCCCCCHHHHHHHHhc-cCCE---EEEEEecCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKN-YGEI---TKIELARNMPS--AKRKDFGFVTFDTHDAAVTCAKSINNAELGEG 443 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~-~G~v---~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 443 (775)
..+|.|.+||+++|++++.+.+.. ++.. ..+.-...... .....-|+|.|.+.+++..-+..++|..|...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 368999999999999999997776 5655 23331122111 11234699999999999999999999887664
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.14 E-value=1.1 Score=49.84 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=47.7
Q ss_pred ccceecCCCCCCCCHHHHHHHHhc--cCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKN--YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 436 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 436 (775)
.+.|.|.-||..+..++|+.||+. |-++..|.+..+. -=||+|++..||+.|.+.|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 366778999999999999999975 6688899887652 35999999999999988554
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.01 E-value=1.1 Score=46.25 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=48.2
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.-|.|.++|.. .-..|..+|.+||.|++..... .-.|-+|.|.+.-+|++||. .||+.|.+
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeecc
Confidence 34666677765 3457889999999997766553 25699999999999999987 78988876
No 203
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=88.85 E-value=3.5 Score=49.31 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=10.5
Q ss_pred CCCCCCHHHHHHHHh
Q 004069 381 LPASWDEDRVRELLK 395 (775)
Q Consensus 381 Lp~~~t~~~L~~~f~ 395 (775)
.|..+....|+.+|+
T Consensus 447 ~pl~~~~~eLrKyF~ 461 (1024)
T KOG1999|consen 447 GPLEVPASELRKYFE 461 (1024)
T ss_pred CccccchHhhhhhcc
Confidence 455666777888886
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.80 E-value=0.33 Score=55.16 Aligned_cols=71 Identities=17% Similarity=0.308 Sum_probs=61.0
Q ss_pred cccccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEE
Q 004069 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKV 449 (775)
Q Consensus 370 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v 449 (775)
..+..+|||+||...+..+-++.++..||.|..+..+. |+|++|..+..+..|+..|+-..+++......+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34558999999999999999999999999998777652 999999999999999999999998876554444
No 205
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=88.25 E-value=0.45 Score=54.92 Aligned_cols=16 Identities=0% Similarity=0.005 Sum_probs=6.6
Q ss_pred EcCCCCCCcHHHHHhh
Q 004069 201 VGGLDKDVVGDDLRKV 216 (775)
Q Consensus 201 V~nLp~~~te~~L~~~ 216 (775)
+..+|--+..++...+
T Consensus 960 ~~d~pvFAsaeey~hl 975 (988)
T KOG2038|consen 960 LNDSPVFASAEEYAHL 975 (988)
T ss_pred cccchhhhhHHHHHHH
Confidence 4444533344443333
No 206
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.22 E-value=12 Score=38.92 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=47.4
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCC-------CCCCcceEEEEEccHHHHHHHHH
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQ-------TKKNKGFAFLRFATVEQARQAVT 256 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~-------~g~~~g~afV~F~s~e~A~~Al~ 256 (775)
.+.|.+.||..+++-..+...|.+||+|+.|.++.+.. .-+......+-|-+.+.|.....
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 34588999999999999999999999999999997651 12334567888888876655443
No 207
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.21 E-value=1.2 Score=40.93 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=44.7
Q ss_pred cceecCCCCCCC----CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 004069 374 KTVFVDGLPASW----DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAE 439 (775)
Q Consensus 374 ~~l~V~nLp~~~----t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 439 (775)
.+|.|.=|..++ +-..|...++.||.|..|.+. .+..|.|.|.+..+|-.|+.+++...
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCC
Confidence 566666555553 234455677889999999875 25689999999999999999888743
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.16 E-value=0.27 Score=55.86 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=62.2
Q ss_pred cCccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccC
Q 004069 194 RKEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTP 272 (775)
Q Consensus 194 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~ 272 (775)
....+|||+||...+..+-++.++..||.|..++.+. |+|..|.....+..|+..|+...++|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3466899999999999999999999999998877653 899999999999999999999999888887765
No 209
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=87.68 E-value=0.72 Score=57.93 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=11.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhC
Q 004069 416 DFGFVTFDTHDAAVTCAKSIN 436 (775)
Q Consensus 416 g~afV~F~~~~~A~~A~~~l~ 436 (775)
|+..+-|++..=+.+|+..|.
T Consensus 4409 ~~~~la~etl~lvtkals~le 4429 (4600)
T COG5271 4409 GSTVLALETLALVTKALSLLE 4429 (4600)
T ss_pred CceeeehHHHHHHHHHHHHHh
Confidence 445555666666666655443
No 210
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.53 E-value=2.8 Score=48.76 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=8.0
Q ss_pred ccHHHHHHHHHhhcC
Q 004069 246 ATVEQARQAVTELKN 260 (775)
Q Consensus 246 ~s~e~A~~Al~~l~~ 260 (775)
.+...+..||+++-+
T Consensus 207 k~~~eiIrClka~mN 221 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMN 221 (1102)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344556666665533
No 211
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.26 E-value=0.27 Score=53.53 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=63.3
Q ss_pred CccEEEEcCCCCCC-cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 195 KEFEVFVGGLDKDV-VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 195 ~~~~l~V~nLp~~~-te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..+.|.|.-+|+.+ |-.+|..+|.+||.|..|.|-.. .-.|.|+|.+...|-.|.. .++..|+++.|+|-|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34456666677665 45789999999999999988543 3459999999999977766 6889999999999887
Q ss_pred CCCCcccccCccc
Q 004069 274 QDSDTLFLGNICK 286 (775)
Q Consensus 274 ~~~~~l~V~nLp~ 286 (775)
.++. +.|+|.
T Consensus 444 nps~---~tn~pa 453 (526)
T KOG2135|consen 444 NPSP---VTNIPA 453 (526)
T ss_pred cCCc---ccCccc
Confidence 6655 555543
No 212
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.95 E-value=0.66 Score=49.43 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=46.5
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCc-eEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHh
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~ 257 (775)
-.+.|-|-++|.....++|..+|..|+. -..|+++-+ ..||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 4567999999999999999999999974 455666544 3599999999999999984
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.76 E-value=1.2 Score=48.58 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=58.7
Q ss_pred ccceecCCCCCCCCHHHHHHHHhccC-CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 373 VKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 373 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
.+.|+|-.+|..+|-.||..|+..|- .|..|+|+++.. -++-.++|.|.+.++|......+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 48899999999999999999998875 588999999632 234558999999999999999999999875
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=85.95 E-value=0.48 Score=55.20 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=60.8
Q ss_pred ceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEeecc
Q 004069 375 TVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLS 454 (775)
Q Consensus 375 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~~~~ 454 (775)
+..+.|++-..+-.-|..+|.+||.|..++.+++ -..|.|+|.+.+.|..|+.+|+|+++.- ....+++.++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~--~g~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSV--TGAPSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccc--cCCceeEEec
Confidence 4456666777888899999999999999999887 5689999999999999999999998763 3344566666
Q ss_pred CCC
Q 004069 455 RPL 457 (775)
Q Consensus 455 ~~~ 457 (775)
++.
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 643
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.46 E-value=1.7 Score=42.64 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=42.5
Q ss_pred CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCCc
Q 004069 386 DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN--NAELGEGD 444 (775)
Q Consensus 386 t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~ 444 (775)
....|+++|..|+.+..+.+++. -+-..|.|.+.++|.+|...|+ +..|.|..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~ 62 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKR 62 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCc
Confidence 45789999999999888888765 5679999999999999999999 89998733
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.38 E-value=4.9 Score=45.33 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=63.2
Q ss_pred ccccceecCCCCCC-CCHHHHHHHHhcc----CCEEEEEEecCC----------CCCC----------------------
Q 004069 371 AQVKTVFVDGLPAS-WDEDRVRELLKNY----GEITKIELARNM----------PSAK---------------------- 413 (775)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~----G~v~~v~i~~~~----------~~g~---------------------- 413 (775)
..+++|-|.||.|. +...+|.-+|..| |.|..|.|.... .+|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45689999999998 8889999999877 689999875321 1111
Q ss_pred ---------------cccEEEEEeCCHHHHHHHHHHhCCCccCCCcceEEEEe
Q 004069 414 ---------------RKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRA 451 (775)
Q Consensus 414 ---------------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~~~v~~ 451 (775)
.--||.|+|.+++.|.......+|.+|......+.+++
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12579999999999999999999999987665555544
No 217
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.28 E-value=4.8 Score=36.00 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=46.7
Q ss_pred EEEcCCCCCCcHHHHHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 199 VFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 199 l~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
+.+...|..++.+.|..+...+- .|..++|+++.. .++-.+.|.|.+.+.|......+||..|+.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444555555566665555553 577888887643 366678999999999999999999877653
No 218
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=81.83 E-value=1.1 Score=48.48 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.9
Q ss_pred CcHHHHHh
Q 004069 208 VVGDDLRK 215 (775)
Q Consensus 208 ~te~~L~~ 215 (775)
+|.++|..
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 35555443
No 219
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=80.96 E-value=1.1 Score=47.26 Aligned_cols=71 Identities=21% Similarity=0.392 Sum_probs=53.7
Q ss_pred cceecCCCCCCCCHHH-HH--HHHhccCCEEEEEEecCCC--CC-CcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 374 KTVFVDGLPASWDEDR-VR--ELLKNYGEITKIELARNMP--SA-KRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~-L~--~~f~~~G~v~~v~i~~~~~--~g-~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+-+||-+|+..+-.+. |+ ..|.+||.|..|.+..+.. .+ ...--++|+|...++|..||...+|..+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 6688889988855444 43 4889999999999887652 11 11223899999999999999999998887744
No 220
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=80.65 E-value=1.5 Score=55.43 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=9.8
Q ss_pred ceEEeecCCHHHHHHHHHHH
Q 004069 322 GFAFLEFSSRSDAMDAFKRL 341 (775)
Q Consensus 322 g~afVeF~s~e~A~~Al~~l 341 (775)
++..+.|.+..-..+|+..|
T Consensus 4409 ~~~~la~etl~lvtkals~l 4428 (4600)
T COG5271 4409 GSTVLALETLALVTKALSLL 4428 (4600)
T ss_pred CceeeehHHHHHHHHHHHHH
Confidence 34444455555555555444
No 221
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=80.10 E-value=3.8 Score=44.24 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=11.0
Q ss_pred HHHHHHHhccCCEEEEEE
Q 004069 388 DRVRELLKNYGEITKIEL 405 (775)
Q Consensus 388 ~~L~~~f~~~G~v~~v~i 405 (775)
.+|..++..|-.+....|
T Consensus 202 ~EL~~F~D~Yd~~mYp~l 219 (420)
T PTZ00473 202 NELNNFFDKYKEHLYPPL 219 (420)
T ss_pred HHHHHHHHHHHhhcCccc
Confidence 566667766665555444
No 222
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.30 E-value=4.2 Score=42.18 Aligned_cols=70 Identities=26% Similarity=0.400 Sum_probs=51.7
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcc-ccccCC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQ-CGVTPS 273 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~-i~V~~a 273 (775)
..-|-|-++|...+ .-|..+|.+||.|+++... .+-.+-+|.|.+..+|.+||. .++.+|+|.. |-|.+|
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 34577778887655 4677899999999877553 345589999999999999999 4888777643 334443
No 223
>PHA03169 hypothetical protein; Provisional
Probab=78.35 E-value=11 Score=40.26 Aligned_cols=8 Identities=0% Similarity=0.102 Sum_probs=4.3
Q ss_pred HHHHHhhc
Q 004069 293 LKEKLKHY 300 (775)
Q Consensus 293 L~~~F~~~ 300 (775)
+..||.++
T Consensus 303 r~~Ffr~~ 310 (413)
T PHA03169 303 RRRFFRQV 310 (413)
T ss_pred HHHHHHHh
Confidence 34566554
No 224
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.51 E-value=2.9 Score=41.14 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=45.0
Q ss_pred cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhc--CCcccCccccccCC
Q 004069 209 VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELK--NPVINGKQCGVTPS 273 (775)
Q Consensus 209 te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~--~~~~~gr~i~V~~a 273 (775)
....|+++|..++.+..+.+++. -+-..|.|.+.+.|..|...|+ +..+.|..|+|..+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 45789999999999888887743 4458999999999999999999 88999999887665
No 225
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=77.13 E-value=4.3 Score=37.51 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=48.0
Q ss_pred CccEEEEcCCCCCC----cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccc
Q 004069 195 KEFEVFVGGLDKDV----VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGV 270 (775)
Q Consensus 195 ~~~~l~V~nLp~~~----te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V 270 (775)
.-.||.|+=|..++ +...|...++.||+|..|.++- +..|.|.|.+..+|-+|+.+++. ...|..+..
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 34567776555444 3345666778899999998863 44699999999999999998765 333444333
No 226
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=74.91 E-value=1.3 Score=37.71 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=41.3
Q ss_pred EEEEEccHHHHHHHHHhhcCC-cccCccccc---------------cCCCCCCcccccCccccccHHHHHHHH
Q 004069 241 AFLRFATVEQARQAVTELKNP-VINGKQCGV---------------TPSQDSDTLFLGNICKTWTKEALKEKL 297 (775)
Q Consensus 241 afV~F~s~e~A~~Al~~l~~~-~~~gr~i~V---------------~~a~~~~~l~V~nLp~~~te~~L~~~F 297 (775)
|+|+|....-|...++.-... .+++..+.| ......++|.|.|||....++.|.+.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999854322 334444433 233566899999999998998887654
No 227
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.86 E-value=11 Score=30.24 Aligned_cols=49 Identities=12% Similarity=0.291 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 004069 384 SWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELG 441 (775)
Q Consensus 384 ~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 441 (775)
.++-++|+..+.+|+ ..+|..+. .|| ||.|.+..+|++|....||+.+.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 378899999999998 45555552 333 89999999999999999999885
No 228
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.80 E-value=8.1 Score=42.39 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=57.1
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccC
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVING 265 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~g 265 (775)
...|+|-.+|..+|-.||..|+..|- .|..++|+++.. -++=.++|.|.+.++|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67799999999999999999998754 689999998532 234458999999999999999999987754
No 229
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=68.05 E-value=5.3 Score=46.35 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=13.4
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccC
Q 004069 417 FGFVTFDTHDAAVTCAKSINNAELG 441 (775)
Q Consensus 417 ~afV~F~~~~~A~~A~~~l~g~~~~ 441 (775)
-.||.--+.+|-..|++.|-...+.
T Consensus 623 ~IFcsImsaeDyiDAFEklLkL~LK 647 (822)
T KOG2141|consen 623 AIFCSIMSAEDYIDAFEKLLKLSLK 647 (822)
T ss_pred hheeeeecchHHHHHHHHHHhccCC
Confidence 3455555666666666554444443
No 230
>PF06403 Lamprin: Lamprin; InterPro: IPR009437 This family consists of several lamprin proteins from the Sea lamprey Petromyzon marinus. Lamprin, an insoluble non-collagen, non-elastin protein, is the major connective tissue component of the fibrillar extracellular matrix of lamprey annular cartilage. Although not generally homologous to any other protein, soluble lamprins contain a tandemly repeated peptide sequence (GGLGY), which is present in both silkmoth chorion proteins and spider dragline silk. Strong homologies to this repeat sequence are also present in several mammalian and avian elastins. It is thought that these proteins share a structural motif which promotes self-aggregation and fibril formation in proteins through interdigitation of hydrophobic side chains in beta-sheet/beta-turn structures, a motif that has been preserved in recognisable form over several hundred million years of evolution [].; GO: 0005198 structural molecule activity, 0005578 proteinaceous extracellular matrix
Probab=67.87 E-value=4.7 Score=34.44 Aligned_cols=22 Identities=45% Similarity=1.155 Sum_probs=17.4
Q ss_pred CCCCCCCCC-CCCCCCCCCcccc
Q 004069 712 SRQGMGYGG-SYSGGDVGGMYSS 733 (775)
Q Consensus 712 ~~~~~~~~~-~~~~~~~~~~~~~ 733 (775)
+-++++||| +|++.-.||.|.-
T Consensus 59 g~aglgy~glgy~g~algg~yth 81 (138)
T PF06403_consen 59 GVAGLGYGGLGYPGAALGGVYTH 81 (138)
T ss_pred cccccccCccCCCcccccceeee
Confidence 456788888 8888888888864
No 231
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=67.24 E-value=23 Score=29.05 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHhccC-----CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCcce
Q 004069 384 SWDEDRVRELLKNYG-----EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNK 446 (775)
Q Consensus 384 ~~t~~~L~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~~~ 446 (775)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEE
Confidence 477888888887663 5778888755 999998665 78888899999999875433
No 232
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=66.88 E-value=13 Score=40.36 Aligned_cols=18 Identities=44% Similarity=0.525 Sum_probs=9.4
Q ss_pred CCCCccccCCCCCCCCCCcCCC
Q 004069 746 VGGSSYSSMYPGRGVGGSSYMG 767 (775)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~ 767 (775)
.||+||.++ -++|.+|++
T Consensus 394 f~~ss~~s~----~~~~~~~~~ 411 (420)
T PTZ00473 394 FDGSSRGSS----DSFGVSYFG 411 (420)
T ss_pred cCCcccCcc----cccCccccC
Confidence 566666664 234444444
No 233
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=66.75 E-value=4.8 Score=47.37 Aligned_cols=77 Identities=29% Similarity=0.358 Sum_probs=62.2
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCCCCcee
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKV 356 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v 356 (775)
.+..+.|.+...+-.-|..+|.+|| .+..+..+++ -.+|.|.|.+.+.|..|+.+|++..+... +.+.+|
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V 368 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYG--SVASAWTLRD-------LNMALVSFSSVESAILALDALQGKEVSVT-GAPSRV 368 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhc--chhhheeccc-------ccchhhhhHHHHHHHHhhhhhcCCccccc-CCceeE
Confidence 3455666777788889999999999 6777766666 56799999999999999999999988654 777888
Q ss_pred cccCCCC
Q 004069 357 SFADSFI 363 (775)
Q Consensus 357 ~~a~~~~ 363 (775)
.|+....
T Consensus 369 ~~ak~~~ 375 (1007)
T KOG4574|consen 369 SFAKTLP 375 (1007)
T ss_pred Eeccccc
Confidence 8886543
No 234
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.64 E-value=15 Score=30.22 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=34.1
Q ss_pred CCCcHHHHHhhccccC-----ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 206 KDVVGDDLRKVFSQVG-----EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 206 ~~~te~~L~~~f~~~G-----~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..++..+|..++...+ .|-.|.|.. .|+||+-... .|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3566777777776653 456777753 3788887764 788899999999999999988653
No 235
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=64.71 E-value=5.8 Score=33.84 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=41.8
Q ss_pred EEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCCC----CccccccccceecCCCCCCCCHHHHHHHHh
Q 004069 324 AFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDP----GDEIMAQVKTVFVDGLPASWDEDRVRELLK 395 (775)
Q Consensus 324 afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~~----~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~ 395 (775)
|+|+|....-|...++.- ...+.+. ...+.|....-.... .-......++|.|.|||....++.|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~-~~~v~l~-~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKK-KHPVPLE-DCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCC-EEEEEEC-CEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 678999998888887632 2223222 233333322111111 112223458899999999999999998664
No 236
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=63.03 E-value=12 Score=45.99 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=8.7
Q ss_pred EcCCCCCCcHHHHHhhc
Q 004069 201 VGGLDKDVVGDDLRKVF 217 (775)
Q Consensus 201 V~nLp~~~te~~L~~~f 217 (775)
.-.||.....-+|..+.
T Consensus 1446 ~~~lp~~~~k~~mssiV 1462 (1640)
T KOG0262|consen 1446 ELKLPLDKEKLDMSSIV 1462 (1640)
T ss_pred EEEecCCCcchHHHHHH
Confidence 33566665555544443
No 237
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=60.67 E-value=6 Score=45.93 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=9.0
Q ss_pred CCCCCCCCHHHHHHH
Q 004069 379 DGLPASWDEDRVREL 393 (775)
Q Consensus 379 ~nLp~~~t~~~L~~~ 393 (775)
.-||-.+|+++|..+
T Consensus 550 ~~~~l~vTledll~a 564 (822)
T KOG2141|consen 550 VSLPLSVTLEDLLHA 564 (822)
T ss_pred hhccccccHHHhhCh
Confidence 334555777777654
No 238
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=59.22 E-value=4.4 Score=49.57 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=4.9
Q ss_pred HHHHHHhccCC
Q 004069 389 RVRELLKNYGE 399 (775)
Q Consensus 389 ~L~~~f~~~G~ 399 (775)
+|..+|..||.
T Consensus 1541 Ev~~VF~vYGI 1551 (1640)
T KOG0262|consen 1541 EVNNVFKVYGI 1551 (1640)
T ss_pred HHHHhhhheee
Confidence 34444444443
No 239
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=59.11 E-value=11 Score=35.47 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=53.1
Q ss_pred cceEEeecCCHHHHHHHHHHHcCCceeccCCCCceecccCCCCC-CCccccccccceecCCCCCC-CCHHHHHHHHhccC
Q 004069 321 RGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFID-PGDEIMAQVKTVFVDGLPAS-WDEDRVRELLKNYG 398 (775)
Q Consensus 321 kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~~~l~v~~a~~~~~-~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G 398 (775)
.++..++|.+.+++.+++. .....+. +..+.+..-.+... ..........=|.|.|||.. .+++-|+.+.+.+|
T Consensus 55 ~~~fl~~F~~~~d~~~vl~---~~p~~~~-~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK---GGPWNFN-GHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCeEEEEEEeccceeEEEe---ccccccc-ccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 6788999999999988876 2222222 23333332222111 11111112234778999988 88899999999999
Q ss_pred CEEEEEEecC
Q 004069 399 EITKIELARN 408 (775)
Q Consensus 399 ~v~~v~i~~~ 408 (775)
.+..++....
T Consensus 131 ~~i~vD~~t~ 140 (153)
T PF14111_consen 131 EPIEVDENTL 140 (153)
T ss_pred CeEEEEcCCC
Confidence 9988887543
No 240
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=58.98 E-value=16 Score=37.52 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=40.4
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCEE-EEEEecCCCCCCcccEEEEEeCCH-------HHHHHHHHHhC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEIT-KIELARNMPSAKRKDFGFVTFDTH-------DAAVTCAKSIN 436 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~-------~~A~~A~~~l~ 436 (775)
.-|+|+||+.++.-.||+..+.+.+-+- .+... -..|-||+.|.+. .++.+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 5699999999999999999999887542 23221 1377899999654 34555554443
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.87 E-value=22 Score=36.28 Aligned_cols=36 Identities=28% Similarity=0.640 Sum_probs=28.6
Q ss_pred cccceecCCCCCC------------CCHHHHHHHHhccCCEEEEEEec
Q 004069 372 QVKTVFVDGLPAS------------WDEDRVRELLKNYGEITKIELAR 407 (775)
Q Consensus 372 ~~~~l~V~nLp~~------------~t~~~L~~~f~~~G~v~~v~i~~ 407 (775)
...+|++.+||.. .+++-|+..|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3468888888854 34678999999999999998863
No 242
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=56.62 E-value=3.7 Score=45.97 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=57.2
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGE 442 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 442 (775)
..+.|||.|++++++-.+|..+|+.+-.+..+.+-......+...+++|+|.---....|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45789999999999999999999998777676665544444556789999998888888888888877754
No 243
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.07 E-value=8.3 Score=42.38 Aligned_cols=7 Identities=29% Similarity=0.824 Sum_probs=3.0
Q ss_pred CCCCCHH
Q 004069 382 PASWDED 388 (775)
Q Consensus 382 p~~~t~~ 388 (775)
|..+...
T Consensus 390 peifDD~ 396 (483)
T KOG2773|consen 390 PEIFDDS 396 (483)
T ss_pred ccccCcH
Confidence 4334444
No 244
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=54.92 E-value=28 Score=28.02 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=40.3
Q ss_pred CCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCcccc
Q 004069 207 DVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCG 269 (775)
Q Consensus 207 ~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~ 269 (775)
.++-++|+..+..|+-. .|+.+ . .| -||.|.+..+|++|+...+++.+.+-.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d-~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD-R----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec-C----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 46778999999998742 23333 2 23 49999999999999999998877665543
No 245
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=54.46 E-value=12 Score=42.02 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=5.8
Q ss_pred cccccHHHHHHHHh
Q 004069 285 CKTWTKEALKEKLK 298 (775)
Q Consensus 285 p~~~te~~L~~~F~ 298 (775)
+..+++..|+..+.
T Consensus 482 ~~~v~e~~vR~~l~ 495 (555)
T KOG2393|consen 482 DIKVNEEAVRRYLE 495 (555)
T ss_pred ccchhHHHHHHHHh
Confidence 33344444444443
No 246
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=54.28 E-value=19 Score=39.68 Aligned_cols=10 Identities=20% Similarity=0.425 Sum_probs=4.9
Q ss_pred cccCcccccc
Q 004069 262 VINGKQCGVT 271 (775)
Q Consensus 262 ~~~gr~i~V~ 271 (775)
.+.|+.|.|.
T Consensus 425 SMrGRpItvA 434 (620)
T COG4547 425 SMRGRPITVA 434 (620)
T ss_pred CcCCcceehh
Confidence 3455555543
No 247
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=51.56 E-value=17 Score=38.09 Aligned_cols=14 Identities=57% Similarity=0.942 Sum_probs=9.6
Q ss_pred CCCcCCCCCCCCCC
Q 004069 761 GGSSYMGSGGSGSY 774 (775)
Q Consensus 761 ~~~~~~~~~~~~~~ 774 (775)
||.||.||++|++|
T Consensus 258 GGgS~GGGGasg~W 271 (271)
T COG1512 258 GGGSSGGGGASGSW 271 (271)
T ss_pred CCCCCCCCCCCCCC
Confidence 55667777777775
No 248
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=49.99 E-value=25 Score=34.94 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.1
Q ss_pred CcccccCCCCC
Q 004069 3 PRTVKRGAAGP 13 (775)
Q Consensus 3 ~~~~k~~~~a~ 13 (775)
|+..++.+...
T Consensus 49 ~k~~~~~~~t~ 59 (200)
T PF03286_consen 49 PKQPKKKRPTA 59 (200)
T ss_pred CCCCCCCCCCC
Confidence 55544444333
No 249
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=49.33 E-value=12 Score=44.46 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCHHHHHHHHHHH
Q 004069 293 LKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRL 341 (775)
Q Consensus 293 L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~e~A~~Al~~l 341 (775)
|.+.+..||...+.-..++ +.|+|-.=-+..++..|+.+|
T Consensus 372 l~~~a~~ygL~dl~~~sF~---------r~~Gy~~~lSA~D~v~al~AL 411 (622)
T PF02724_consen 372 LEKYAPKYGLDDLVFPSFV---------RTYGYRGKLSASDVVYALTAL 411 (622)
T ss_pred HHHHHHhcCCCCceeeeEE---------EEecCCCceeHHHHHHHHHHH
Confidence 3444556664444444333 334443333444555555444
No 250
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=47.76 E-value=4.7e+02 Score=29.69 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=8.5
Q ss_pred EEEEEccHHHHHHHHHh
Q 004069 241 AFLRFATVEQARQAVTE 257 (775)
Q Consensus 241 afV~F~s~e~A~~Al~~ 257 (775)
-++.|.+......+|..
T Consensus 222 ~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 222 QHVHFVDKKRKRELLSQ 238 (456)
T ss_pred EEEEEcCHHHHHHHHHH
Confidence 34555555544444443
No 251
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=46.79 E-value=11 Score=44.69 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=4.8
Q ss_pred HHHHHHhhcC
Q 004069 292 ALKEKLKHYG 301 (775)
Q Consensus 292 ~L~~~F~~~G 301 (775)
.|..+|.+.|
T Consensus 338 rL~~lLAkMG 347 (622)
T PF02724_consen 338 RLHKLLAKMG 347 (622)
T ss_pred HHHHHHHHhC
Confidence 3444555544
No 252
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=27 Score=37.76 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCC-CcHHHHHhhcccc----CceEEEEEee
Q 004069 196 EFEVFVGGLDKD-VVGDDLRKVFSQV----GEVTEVRLMM 230 (775)
Q Consensus 196 ~~~l~V~nLp~~-~te~~L~~~f~~~----G~v~~v~i~~ 230 (775)
...|-|-||.|+ +...+|..+|+.| |+|..|.|..
T Consensus 146 tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 146 TKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred ccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 345899999986 5667888888876 6788888864
No 253
>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]
Probab=44.03 E-value=13 Score=40.96 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=7.6
Q ss_pred CCCCCcceEEEE
Q 004069 233 QTKKNKGFAFLR 244 (775)
Q Consensus 233 ~~g~~~g~afV~ 244 (775)
+-+++.||.|-.
T Consensus 241 Ni~~FSGF~w~~ 252 (594)
T KOG2266|consen 241 NIGQFSGFVWSK 252 (594)
T ss_pred hhhcccCccccc
Confidence 346677777665
No 254
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=43.10 E-value=23 Score=39.78 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=14.2
Q ss_pred EEEcCCCCCCcHHHHHhhcc
Q 004069 199 VFVGGLDKDVVGDDLRKVFS 218 (775)
Q Consensus 199 l~V~nLp~~~te~~L~~~f~ 218 (775)
-+|..||--+..++..+++.
T Consensus 801 ~~lk~lpvfa~ad~ya~~ld 820 (821)
T COG5593 801 NMLKSLPVFASADDYAQYLD 820 (821)
T ss_pred HHHhcCCcccchHHHHHHhc
Confidence 56778888777777666553
No 255
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.14 E-value=35 Score=36.82 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=44.4
Q ss_pred EEEEEccHHHHHHHHHhhcCCcccCccccccCCCCCCcccccCccccccHHHHHHHHh
Q 004069 241 AFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLK 298 (775)
Q Consensus 241 afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~~~F~ 298 (775)
|||+|.+..+|..|++.+.... ...+.|..|.+.+.|+=.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999999655433 4667889999999999999977776666665444
No 256
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=40.95 E-value=19 Score=34.80 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=47.9
Q ss_pred cceecCCCCCCC-----CHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 374 KTVFVDGLPASW-----DEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 374 ~~l~V~nLp~~~-----t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
+.+++.+|+..+ .......+|.+|.+.....+++. .++.-|-|.+...|..|...++...|.++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 345555555442 22456678888887777777754 567778899999999999999999999864
No 257
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.81 E-value=32 Score=27.86 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=43.6
Q ss_pred HHHHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCCC
Q 004069 211 DDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDS 276 (775)
Q Consensus 211 ~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~ 276 (775)
++|.+.|...| +|..|.-+....++.....-||++....+... .++-..++++.|.|.+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 45677777777 67777777776667777788888887655333 34556678888888766443
No 258
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=39.47 E-value=33 Score=38.71 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=5.7
Q ss_pred HHHHHHHHHhCCCcc
Q 004069 426 DAAVTCAKSINNAEL 440 (775)
Q Consensus 426 ~~A~~A~~~l~g~~~ 440 (775)
+++++|.+.+....|
T Consensus 410 eAkkk~Ke~~~~a~F 424 (432)
T PF09073_consen 410 EAKKKAKEKQKIAKF 424 (432)
T ss_pred HHHHHHHHHhccCCC
Confidence 333444333333333
No 259
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.14 E-value=12 Score=41.97 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=55.7
Q ss_pred CccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCccc
Q 004069 195 KEFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVIN 264 (775)
Q Consensus 195 ~~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~ 264 (775)
..++|||.|+++.++-.+|..++..+--+..+.+.......+...+.+|.|.--.....|+.+||+.-+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4567999999999999999999999877777766554444567778999999887778888878775543
No 260
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=39.12 E-value=71 Score=34.69 Aligned_cols=74 Identities=11% Similarity=0.199 Sum_probs=55.6
Q ss_pred ccccceecCCCCCC-CCHHHHHHHHhcc----CCEEEEEEecCCC-----------------------------------
Q 004069 371 AQVKTVFVDGLPAS-WDEDRVRELLKNY----GEITKIELARNMP----------------------------------- 410 (775)
Q Consensus 371 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~----G~v~~v~i~~~~~----------------------------------- 410 (775)
..+++|-|-||.|. +...+|..+|+.| |.|..|.|.....
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 45689999999998 8889999999876 6788777642110
Q ss_pred -----CC-------------------------CcccEEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 004069 411 -----SA-------------------------KRKDFGFVTFDTHDAAVTCAKSINNAELGEGD 444 (775)
Q Consensus 411 -----~g-------------------------~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 444 (775)
-| ..--||.|+|.+...+.......+|.++....
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~sa 287 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSA 287 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccccc
Confidence 00 00237899999999999999999999887544
No 261
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.29 E-value=32 Score=27.85 Aligned_cols=62 Identities=15% Similarity=0.302 Sum_probs=43.9
Q ss_pred HHHHhhccccC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC
Q 004069 211 DDLRKVFSQVG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD 275 (775)
Q Consensus 211 ~~L~~~f~~~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~ 275 (775)
++|.+.|...| .+..|.-+....++.....-||+......-.. .|+-..|+++.+.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46778888888 67888888877777777788888776543333 3455667888888876543
No 262
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.22 E-value=93 Score=32.62 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=49.8
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEEecCC-------CCCCcccEEEEEeCCHHHHHHHH
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNM-------PSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-------~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
.++.|.+.||...++--.+...|.+||.|+.|.++.+. ...+......+-|-+.+.|..-.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 45789999999999999999999999999999999775 11233467899999998877654
No 263
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=34.60 E-value=1e+02 Score=35.08 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=3.9
Q ss_pred HHHHhCCCcc
Q 004069 431 CAKSINNAEL 440 (775)
Q Consensus 431 A~~~l~g~~~ 440 (775)
.++.+-+..|
T Consensus 359 ~ie~~l~~~~ 368 (456)
T PRK10590 359 DIEKLLKKEI 368 (456)
T ss_pred HHHHHhcCCC
Confidence 3344433333
No 264
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=34.46 E-value=38 Score=37.51 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=4.5
Q ss_pred cEEEEcCCCCC
Q 004069 197 FEVFVGGLDKD 207 (775)
Q Consensus 197 ~~l~V~nLp~~ 207 (775)
.+||-.-+.+.
T Consensus 317 Ykvftr~fDe~ 327 (620)
T COG4547 317 YKVFTREFDEI 327 (620)
T ss_pred ccccchhhhhh
Confidence 34444444333
No 265
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=34.35 E-value=8.8e+02 Score=29.01 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=10.2
Q ss_pred CCCCCCHHHHHHHHhcc
Q 004069 381 LPASWDEDRVRELLKNY 397 (775)
Q Consensus 381 Lp~~~t~~~L~~~f~~~ 397 (775)
.-|+|.++|.+-+....
T Consensus 7 ~rWDW~~ED~K~VvqRV 23 (828)
T PF04094_consen 7 ERWDWGPEDFKMVVQRV 23 (828)
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 34566667776665543
No 266
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=34.31 E-value=38 Score=38.89 Aligned_cols=12 Identities=17% Similarity=0.706 Sum_probs=8.4
Q ss_pred ccceEEeecCCH
Q 004069 320 NRGFAFLEFSSR 331 (775)
Q Consensus 320 ~kg~afVeF~s~ 331 (775)
.+||-|.+|...
T Consensus 319 ~rG~rFSTYA~w 330 (509)
T PRK05901 319 TKGYKFSTYATW 330 (509)
T ss_pred ccCCCchhhhHH
Confidence 377888877654
No 267
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=71 Score=34.70 Aligned_cols=54 Identities=9% Similarity=0.244 Sum_probs=42.9
Q ss_pred cceecCCCCCCCCHHHHHHHHhccCCE-EEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYGEI-TKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 434 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 434 (775)
..|-|-++|.....+||...|+.|+.- ..|..+.+ -.||-.|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 678899999999999999999999642 23333333 4899999999999999763
No 268
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.22 E-value=1.6e+02 Score=23.94 Aligned_cols=61 Identities=21% Similarity=0.131 Sum_probs=38.4
Q ss_pred ceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC-CCcccccCccccccHHHHHHHHhhcC
Q 004069 239 GFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD-SDTLFLGNICKTWTKEALKEKLKHYG 301 (775)
Q Consensus 239 g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~-~~~l~V~nLp~~~te~~L~~~F~~~G 301 (775)
.+.+|.|.+...|.+|-+.|+...+..+.+.+-..-. .+.+.+.--+ ...+.+.++++..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~--~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEP--EDLEKIKEILEENG 63 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEECh--hhHHHHHHHHHHCC
Confidence 3689999999999999999887766666665543321 2222221111 34556677777765
No 269
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.80 E-value=44 Score=36.27 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=47.8
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCc-eEEEEEeecCCC--CCCcceEEEEEccHHHHHHHHHhhcCCcc
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQT--KKNKGFAFLRFATVEQARQAVTELKNPVI 263 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~-v~~v~i~~d~~~--g~~~g~afV~F~s~e~A~~Al~~l~~~~~ 263 (775)
.+.|.|.+||...++.+|.+....|-. |....+...... ....+.|||.|...++.......+++++|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346999999999999999888777643 222333221111 12356799999999998888888887655
No 270
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=31.34 E-value=1.1e+02 Score=36.53 Aligned_cols=11 Identities=9% Similarity=0.154 Sum_probs=6.1
Q ss_pred cccceecCCCC
Q 004069 372 QVKTVFVDGLP 382 (775)
Q Consensus 372 ~~~~l~V~nLp 382 (775)
...++|++++.
T Consensus 144 ~~qR~f~gvvt 154 (1194)
T KOG4246|consen 144 EPQRRFAGVVT 154 (1194)
T ss_pred Ccceeeehhhh
Confidence 34566666554
No 271
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=42 Score=38.73 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=7.5
Q ss_pred cccccCccccc
Q 004069 278 TLFLGNICKTW 288 (775)
Q Consensus 278 ~l~V~nLp~~~ 288 (775)
+|||.|+|..+
T Consensus 528 ~v~l~nvP~~i 538 (754)
T KOG1980|consen 528 RVFLRNVPVSI 538 (754)
T ss_pred EEEeecCcHHH
Confidence 67777777653
No 272
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=31.08 E-value=33 Score=41.74 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.7
Q ss_pred EEEcCCC
Q 004069 199 VFVGGLD 205 (775)
Q Consensus 199 l~V~nLp 205 (775)
+||-.+|
T Consensus 907 ~wvl~~P 913 (1096)
T TIGR00927 907 IYLFLLP 913 (1096)
T ss_pred EeEEecc
Confidence 5554455
No 273
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=15 Score=40.17 Aligned_cols=75 Identities=7% Similarity=-0.147 Sum_probs=60.1
Q ss_pred EEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCccccccCC
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPS 273 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a 273 (775)
..|+..||..+++.+|.-+|..||.|..+.+....+.+...-.+||...+ ..|..||..+.-..+++.+++|..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 36788899999999999999999999888776655556667778877654 5677888888888888888888766
No 274
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.26 E-value=28 Score=35.05 Aligned_cols=34 Identities=12% Similarity=0.380 Sum_probs=29.1
Q ss_pred cccceecCCCCCCCCHHHHHHHHhccCCEEEEEE
Q 004069 372 QVKTVFVDGLPASWDEDRVRELLKNYGEITKIEL 405 (775)
Q Consensus 372 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i 405 (775)
...+||+-|||..+|++.|..+..++|.+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 3489999999999999999999999997655543
No 275
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.25 E-value=43 Score=30.26 Aligned_cols=58 Identities=9% Similarity=0.215 Sum_probs=31.0
Q ss_pred cceecCCCCCC---------CCHHHHHHHHhccCCEEEEEEecCCCCCCcccEEEEEeC-CHHHHHHHHHH
Q 004069 374 KTVFVDGLPAS---------WDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFD-THDAAVTCAKS 434 (775)
Q Consensus 374 ~~l~V~nLp~~---------~t~~~L~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~-~~~~A~~A~~~ 434 (775)
-++.|-|++.. .+-+.|++.|..|..+. |..+.+.. -..|+++|+|. +-.--..|+..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 45556666543 34578999999998874 55555532 45899999996 45556666553
No 276
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.51 E-value=1.2e+02 Score=24.16 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=15.6
Q ss_pred HHHHHHHhccCCEEEEEEe
Q 004069 388 DRVRELLKNYGEITKIELA 406 (775)
Q Consensus 388 ~~L~~~f~~~G~v~~v~i~ 406 (775)
.+|+++|+..|.|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999766553
No 277
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.44 E-value=47 Score=36.07 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeec-CCCCCCccceEEeecCCHHHHHHHHHHHcCCceeccCC
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVED-SNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD 351 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d-~~~~g~~kg~afVeF~s~e~A~~Al~~l~~~~i~~~~~ 351 (775)
..|.|.+||...++.+|.+.+..+-. .+....+... ......-.+.+||.|....+...-...+++..++...+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~-~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPE-HVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCcc-ccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 36788999999999999888877542 2222222211 11112236789999999999888888888877764434
No 278
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=27.10 E-value=53 Score=29.71 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=27.1
Q ss_pred EEEEcCCCCCC---------cHHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHH
Q 004069 198 EVFVGGLDKDV---------VGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVE 249 (775)
Q Consensus 198 ~l~V~nLp~~~---------te~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e 249 (775)
++.|.|++... ..+.|.+.|..|..+. ++.+.+. ....|++.|.|..--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 46777876543 4578999999998875 4444443 256899999999753
No 279
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=26.95 E-value=1.1e+02 Score=31.75 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=34.1
Q ss_pred CcccccCccccccHHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecCCH
Q 004069 277 DTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSR 331 (775)
Q Consensus 277 ~~l~V~nLp~~~te~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~s~ 331 (775)
..|+|+||+.++.-.+|+..+.+.+. .-..|.+ .-+.+-||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~isw-------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKREC-TPMSISW-------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCC-CceeEee-------ecCCcceeEecCCc
Confidence 56999999999999999999988762 1122222 12367799999764
No 280
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.44 E-value=39 Score=36.76 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=47.6
Q ss_pred cceecCCCCCCCC--------HHHHHHHHhc--cCCEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHH
Q 004069 374 KTVFVDGLPASWD--------EDRVRELLKN--YGEITKIELARNMPSAKRKDFGFVTFDTHDAAVTCA 432 (775)
Q Consensus 374 ~~l~V~nLp~~~t--------~~~L~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 432 (775)
+.+|+.++....+ .++|...|.. ++.+..|...++..+..++|-.|++|.....|++++
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 5566666655533 3599999999 678888888888877888999999999999999885
No 281
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=4.3e+02 Score=31.10 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=62.8
Q ss_pred HHHHHHHHhhcCCCceeeeEEeecCCCCCCccceEEeecC--CHHHHHHHHHHHcC--C---ceeccCCCCceecccCCC
Q 004069 290 KEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFS--SRSDAMDAFKRLQK--R---DVLFGVDRPAKVSFADSF 362 (775)
Q Consensus 290 e~~L~~~F~~~G~~~i~~i~l~~d~~~~g~~kg~afVeF~--s~e~A~~Al~~l~~--~---~i~~~~~~~l~v~~a~~~ 362 (775)
-++|.+.|.... .+..+.+. |-+||.|. ...-+...+..+.. . ....+.++++.|.|..+
T Consensus 60 A~~i~~~l~~~~--~~~~veia----------GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa- 126 (577)
T COG0018 60 AEEIAEKLDTDE--IIEKVEIA----------GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA- 126 (577)
T ss_pred HHHHHHhccccC--cEeEEEEc----------CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC-
Confidence 345555555544 45666663 22455544 33333333344432 1 12333467788888765
Q ss_pred CCCCccccccccceecCCCCCCCCHHHHHHHHhccC-CEEEEEEecCC
Q 004069 363 IDPGDEIMAQVKTVFVDGLPASWDEDRVRELLKNYG-EITKIELARNM 409 (775)
Q Consensus 363 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~ 409 (775)
+++.-|+||+|-..+--+-|..+|...| .|+....+.|.
T Consensus 127 --------NptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 127 --------NPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred --------CCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 4557899999999999999999999999 57777777663
No 282
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.58 E-value=89 Score=30.27 Aligned_cols=58 Identities=28% Similarity=0.195 Sum_probs=39.3
Q ss_pred ccEEEEcCCCCCCcHHHHHhhccccCceEEEEEeecCCC-CCCcceEEEEEccHHHHHHHHHh
Q 004069 196 EFEVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQT-KKNKGFAFLRFATVEQARQAVTE 257 (775)
Q Consensus 196 ~~~l~V~nLp~~~te~~L~~~f~~~G~v~~v~i~~d~~~-g~~~g~afV~F~s~e~A~~Al~~ 257 (775)
.++++.. +.+...++|.++.. |.+..|.+...... ...+|-.||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3445555 44444555555555 77877777653221 25789999999999999998875
No 283
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=23.05 E-value=89 Score=38.35 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=2.9
Q ss_pred eEEEEEc
Q 004069 240 FAFLRFA 246 (775)
Q Consensus 240 ~afV~F~ 246 (775)
+-.|.|-
T Consensus 933 ~y~ltFi 939 (1096)
T TIGR00927 933 FFVITFL 939 (1096)
T ss_pred eeeehHH
Confidence 3334443
No 284
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=22.18 E-value=6.9e+02 Score=23.78 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=42.6
Q ss_pred cceecCCCCCCCCHHHHHHHHhccC--CEEEEEEecCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 004069 374 KTVFVDGLPASWDEDRVRELLKNYG--EITKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNA 438 (775)
Q Consensus 374 ~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 438 (775)
..|.|+.+-..--.+.|-.+ ...| .|+.+.+.+....+.+..---+.....+..++|+..++-.
T Consensus 89 ~vvLIGhiv~tdiqDTId~I-n~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev 154 (170)
T COG2061 89 DVVLIGHIVHTDIQDTIDRI-NSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEV 154 (170)
T ss_pred eEEEEEeeecCcHHHHHHHh-hccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHH
Confidence 77888888755434444443 3344 7888888877666666555555556788899998877653
No 285
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.80 E-value=1.3e+02 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.524 Sum_probs=25.4
Q ss_pred CCcccccCccccc------------cHHHHHHHHhhcCCCceeeeEE
Q 004069 276 SDTLFLGNICKTW------------TKEALKEKLKHYGVDNVEDLTL 310 (775)
Q Consensus 276 ~~~l~V~nLp~~~------------te~~L~~~F~~~G~~~i~~i~l 310 (775)
..+|++.+||..| .+.-|...|..||.+.++.|-+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3689999998765 3677899999999544444443
No 286
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=21.71 E-value=1.5e+02 Score=27.58 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=49.7
Q ss_pred cceEEEEEccHHHHHHHHHhhcCCcccCccccccCCCC------------CCcccccCcccc-ccHHHHHHHHhhcCCCc
Q 004069 238 KGFAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQD------------SDTLFLGNICKT-WTKEALKEKLKHYGVDN 304 (775)
Q Consensus 238 ~g~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~------------~~~l~V~nLp~~-~te~~L~~~F~~~G~~~ 304 (775)
.++..+.|.+.+++..++. .....+.+..+.+..-.+ ..-|.|.|||.. ++++-++.+....| .
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG--~ 131 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG--E 131 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC--C
Confidence 5689999999999999988 355566776666643321 123677899976 67778888999999 4
Q ss_pred eeeeEE
Q 004069 305 VEDLTL 310 (775)
Q Consensus 305 i~~i~l 310 (775)
+..+..
T Consensus 132 ~i~vD~ 137 (153)
T PF14111_consen 132 PIEVDE 137 (153)
T ss_pred eEEEEc
Confidence 555443
No 287
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=47 Score=35.60 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=5.5
Q ss_pred CCccceEEeecC
Q 004069 318 GMNRGFAFLEFS 329 (775)
Q Consensus 318 g~~kg~afVeF~ 329 (775)
+++..|.|..|-
T Consensus 450 ~~pG~Ytytv~l 461 (520)
T KOG4434|consen 450 GKPGNYTYTVFL 461 (520)
T ss_pred CCCCceEEEEEE
Confidence 344445554443
No 288
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=21.26 E-value=76 Score=36.54 Aligned_cols=7 Identities=43% Similarity=0.923 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004069 387 EDRVREL 393 (775)
Q Consensus 387 ~~~L~~~ 393 (775)
.+.|..+
T Consensus 388 ~e~V~~~ 394 (509)
T PRK05901 388 PEKVREI 394 (509)
T ss_pred HHHHHHH
Confidence 3333333
No 289
>PTZ00110 helicase; Provisional
Probab=21.02 E-value=1.4e+02 Score=34.79 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=5.1
Q ss_pred CCCccccCCC
Q 004069 747 GGSSYSSMYP 756 (775)
Q Consensus 747 ~~~~~~~~~~ 756 (775)
|++.|++.|-
T Consensus 51 ~~~~~~~~~~ 60 (545)
T PTZ00110 51 GYGNYSGGYG 60 (545)
T ss_pred CCCCCCCcCC
Confidence 4445555553
No 290
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=21.00 E-value=40 Score=32.65 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=49.8
Q ss_pred EEEEcCCCCCCc-----HHHHHhhccccCceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhhcCCcccCc-ccccc
Q 004069 198 EVFVGGLDKDVV-----GDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTELKNPVINGK-QCGVT 271 (775)
Q Consensus 198 ~l~V~nLp~~~t-----e~~L~~~f~~~G~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l~~~~~~gr-~i~V~ 271 (775)
++++.+|+..+- ......+|.+|.+.....+++ +.++.-|.|.+++.|..|..+++...|.|+ .|..-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 356666664432 234556777776665555543 355678899999999999999999999988 66655
Q ss_pred CCCCC
Q 004069 272 PSQDS 276 (775)
Q Consensus 272 ~a~~~ 276 (775)
.++..
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 55433
No 291
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.87 E-value=71 Score=37.05 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=4.2
Q ss_pred cEEEEcCCCC
Q 004069 197 FEVFVGGLDK 206 (775)
Q Consensus 197 ~~l~V~nLp~ 206 (775)
.+||-.-...
T Consensus 296 Y~vfTt~fDe 305 (600)
T TIGR01651 296 YKVFTTAFDE 305 (600)
T ss_pred ceecchhhhh
Confidence 3444444333
No 292
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=20.59 E-value=92 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=8.5
Q ss_pred eEEEEEccHHHHHHHHH
Q 004069 240 FAFLRFATVEQARQAVT 256 (775)
Q Consensus 240 ~afV~F~s~e~A~~Al~ 256 (775)
+-.-.|...+.|-+.-+
T Consensus 211 W~HDrF~e~eQaPKSr~ 227 (694)
T KOG4264|consen 211 WKHDRFDEKEQAPKSRK 227 (694)
T ss_pred cccccchhhhcCchHHH
Confidence 34445666555544433
No 293
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.48 E-value=2.4e+02 Score=23.98 Aligned_cols=58 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCcHHHHHhhccc-cC-ceEEEEEeecCCCCCCcceEEEEEccHHHHHHHHHhh
Q 004069 198 EVFVGGLDKDVVGDDLRKVFSQ-VG-EVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTEL 258 (775)
Q Consensus 198 ~l~V~nLp~~~te~~L~~~f~~-~G-~v~~v~i~~d~~~g~~~g~afV~F~s~e~A~~Al~~l 258 (775)
+.++--+...++..+|++.++. |+ .|..|..+..+ ....-|||.|..-..|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
No 294
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=20.40 E-value=92 Score=35.26 Aligned_cols=71 Identities=20% Similarity=0.388 Sum_probs=0.0
Q ss_pred hccCCCCCCCCCCcccCCCCCCCCcchhhhhccccCCCCccccccccCccchhhhcccCCCCCccccCCCh
Q 004069 91 ERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAEGEMEDVPEEHGQGE 161 (775)
Q Consensus 91 ee~e~ed~e~e~e~ee~~~~d~~e~e~e~ee~ee~~eeeee~~eed~eeee~~d~~eee~e~~~~e~~~~e 161 (775)
+.......+++++++++..+...+.+.+.++..+...++++..++..+..+++.+++........+.+..+
T Consensus 366 dp~~~~~~ee~eeeee~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~s~~~~~ 436 (436)
T PF03985_consen 366 DPIEYEEEEEEEEEEEEEEEEEEEEEEEDDEEEEESDSDEEESEEESESDEEDSDEESPSKEESASDSESD 436 (436)
T ss_pred cCCCccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
No 295
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.04 E-value=80 Score=35.81 Aligned_cols=47 Identities=17% Similarity=0.052 Sum_probs=22.2
Q ss_pred eEEEEEccHHHHHHHHHhhcCCcccCccccccCCCCCCcccccCccccccHHHHH
Q 004069 240 FAFLRFATVEQARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALK 294 (775)
Q Consensus 240 ~afV~F~s~e~A~~Al~~l~~~~~~gr~i~V~~a~~~~~l~V~nLp~~~te~~L~ 294 (775)
-.+|...+.+-|..+....... ..+..-..+|.|++|.....+..|+
T Consensus 254 RVLVL~PTRELaiQv~sV~~ql--------aqFt~I~~~L~vGGL~lk~QE~~LR 300 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQL--------AQFTDITVGLAVGGLDLKAQEAVLR 300 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHH--------HhhccceeeeeecCccHHHHHHHHh
Confidence 3556666766666555432211 0011112356666666555444443
Done!